Psyllid ID: psy8160
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 324 | 2.2.26 [Sep-21-2011] | |||||||
| O70546 | 1401 | Lysine-specific demethyla | yes | N/A | 0.546 | 0.126 | 0.519 | 8e-62 | |
| O15550 | 1401 | Lysine-specific demethyla | yes | N/A | 0.546 | 0.126 | 0.514 | 1e-61 | |
| O14607 | 1347 | Histone demethylase UTY O | no | N/A | 0.546 | 0.131 | 0.519 | 3e-61 | |
| Q6B4Z3 | 1079 | Histone demethylase UTY O | no | N/A | 0.546 | 0.164 | 0.514 | 8e-61 | |
| P79457 | 1212 | Histone demethylase UTY O | no | N/A | 0.546 | 0.146 | 0.485 | 1e-56 | |
| O60184 | 1102 | General transcriptional c | yes | N/A | 0.570 | 0.167 | 0.308 | 2e-23 | |
| O77033 | 1390 | General transcriptional c | yes | N/A | 0.617 | 0.143 | 0.319 | 1e-22 | |
| P14922 | 966 | General transcriptional c | yes | N/A | 0.521 | 0.174 | 0.238 | 8e-11 | |
| O34452 | 206 | TPR repeat-containing pro | yes | N/A | 0.441 | 0.694 | 0.234 | 8e-05 |
| >sp|O70546|KDM6A_MOUSE Lysine-specific demethylase 6A OS=Mus musculus GN=Kdm6a PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 237 bits (605), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 109/210 (51%), Positives = 146/210 (69%), Gaps = 33/210 (15%)
Query: 33 AIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGL 92
AIK FQ++LYVDPS+ RA E+HLRLGLM
Sbjct: 151 AIKAFQEVLYVDPSFCRAKEIHLRLGLM-------------------------------- 178
Query: 93 MFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKED 152
FKVN +Y+S+LKH L L+D +PCT + E++FHIAHL+E QRKY +AK++YEQLL+ +
Sbjct: 179 -FKVNTDYESSLKHFQLALVDCNPCTLSNAEIQFHIAHLYETQRKYHSAKEAYEQLLQTE 237
Query: 153 DLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFA 212
+L +KA I +QLGWM+H +D LG+K+ +E+ AI LQKS+EADP SGQS Y LGRC++
Sbjct: 238 NLSAQVKATILQQLGWMHHTVDLLGDKATKESYAIQYLQKSLEADPNSGQSWYFLGRCYS 297
Query: 213 AVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242
++GKV DAF++YR S++KSE +ADTWCSIG
Sbjct: 298 SIGKVQDAFISYRQSIDKSEASADTWCSIG 327
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Histone demethylase that specifically demethylates 'Lys-27' of histone H3, thereby playing a central role in histone code. Demethylates trimethylated and dimethylated but not monomethylated H3 'Lys-27'. Plays a central role in regulation of posterior development, by regulating HOX gene expression. Demethylation of 'Lys-27' of histone H3 is concomitant with methylation of 'Lys-4' of histone H3, and regulates the recruitment of the PRC1 complex and monoubiquitination of histone H2A. Mus musculus (taxid: 10090) EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: - |
| >sp|O15550|KDM6A_HUMAN Lysine-specific demethylase 6A OS=Homo sapiens GN=KDM6A PE=1 SV=2 | Back alignment and function description |
|---|
Score = 236 bits (603), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 108/210 (51%), Positives = 146/210 (69%), Gaps = 33/210 (15%)
Query: 33 AIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGL 92
AIK FQ++LYVDPS+ RA E+HLRLGLM
Sbjct: 149 AIKAFQEVLYVDPSFCRAKEIHLRLGLM-------------------------------- 176
Query: 93 MFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKED 152
FKVN +Y+S+LKH L L+D +PCT + E++FHIAHL+E QRKY +AK++YEQLL+ +
Sbjct: 177 -FKVNTDYESSLKHFQLALVDCNPCTLSNAEIQFHIAHLYETQRKYHSAKEAYEQLLQTE 235
Query: 153 DLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFA 212
+L +KA + +QLGWM+H +D LG+K+ +E+ AI LQKS+EADP SGQS Y LGRC++
Sbjct: 236 NLSAQVKATVLQQLGWMHHTVDLLGDKATKESYAIQYLQKSLEADPNSGQSWYFLGRCYS 295
Query: 213 AVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242
++GKV DAF++YR S++KSE +ADTWCSIG
Sbjct: 296 SIGKVQDAFISYRQSIDKSEASADTWCSIG 325
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Histone demethylase that specifically demethylates 'Lys-27' of histone H3, thereby playing a central role in histone code. Demethylates trimethylated and dimethylated but not monomethylated H3 'Lys-27'. Plays a central role in regulation of posterior development, by regulating HOX gene expression. Demethylation of 'Lys-27' of histone H3 is concomitant with methylation of 'Lys-4' of histone H3, and regulates the recruitment of the PRC1 complex and monoubiquitination of histone H2A. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: 4 EC: . EC: 1 EC: 1 EC: . EC: - |
| >sp|O14607|UTY_HUMAN Histone demethylase UTY OS=Homo sapiens GN=UTY PE=1 SV=2 | Back alignment and function description |
|---|
Score = 235 bits (600), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 109/210 (51%), Positives = 145/210 (69%), Gaps = 33/210 (15%)
Query: 33 AIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGL 92
AIK FQ +LYVDPS+ RA E+HLRLGLM
Sbjct: 146 AIKAFQDVLYVDPSFCRAKEIHLRLGLM-------------------------------- 173
Query: 93 MFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKED 152
FKVN +Y S+LKH L LID +PCT + E++FHIAHL+E QRKY +AK++YEQLL+ +
Sbjct: 174 -FKVNTDYKSSLKHFQLALIDCNPCTLSNAEIQFHIAHLYETQRKYHSAKEAYEQLLQTE 232
Query: 153 DLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFA 212
+LP +KA + +QLGWM+H +D +G+K+ +E+ AI LQKS+EADP SGQS Y LGRC++
Sbjct: 233 NLPAQVKATVLQQLGWMHHNMDLVGDKATKESYAIQYLQKSLEADPNSGQSWYFLGRCYS 292
Query: 213 AVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242
++GKV DAF++YR S++KSE +ADTWCSIG
Sbjct: 293 SIGKVQDAFISYRQSIDKSEASADTWCSIG 322
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Histone demethylase. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: 4 EC: . EC: 1 EC: 1 EC: . EC: - |
| >sp|Q6B4Z3|UTY_PANTR Histone demethylase UTY OS=Pan troglodytes GN=UTY PE=2 SV=1 | Back alignment and function description |
|---|
Score = 234 bits (596), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 108/210 (51%), Positives = 145/210 (69%), Gaps = 33/210 (15%)
Query: 33 AIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGL 92
AIK FQ +LYVDPS+ RA E+HLRLGLM
Sbjct: 146 AIKAFQDVLYVDPSFCRAKEIHLRLGLM-------------------------------- 173
Query: 93 MFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKED 152
FKVN +Y S+LKH L LID +PCT + E++FHIAHL+E QRKY +AK++YEQLL+ +
Sbjct: 174 -FKVNTDYKSSLKHFQLALIDCNPCTLSSAEIQFHIAHLYETQRKYHSAKEAYEQLLQTE 232
Query: 153 DLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFA 212
+LP +KA + +QLGWM+H +D +G+K+ +E+ AI LQKS+EADP SGQS Y LGRC++
Sbjct: 233 NLPAQVKATVLQQLGWMHHNMDLVGDKATKESYAIPYLQKSLEADPNSGQSWYFLGRCYS 292
Query: 213 AVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242
++GKV DAF++YR S+++SE +ADTWCSIG
Sbjct: 293 SIGKVQDAFVSYRQSIDRSEASADTWCSIG 322
|
Histone demethylase. Pan troglodytes (taxid: 9598) EC: 1 EC: . EC: 1 EC: 4 EC: . EC: 1 EC: 1 EC: . EC: - |
| >sp|P79457|UTY_MOUSE Histone demethylase UTY OS=Mus musculus GN=Uty PE=1 SV=2 | Back alignment and function description |
|---|
Score = 220 bits (560), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 102/210 (48%), Positives = 140/210 (66%), Gaps = 33/210 (15%)
Query: 33 AIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGL 92
AI+ FQ++LYVDP++ RA E+HLRLG MF
Sbjct: 144 AIRAFQEVLYVDPNFCRAKEIHLRLGFMF------------------------------- 172
Query: 93 MFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKED 152
K+N +Y+S+LKH L LID + CT + +E++FHIAHL+E QRKY +AK +YEQLL+ +
Sbjct: 173 --KMNTDYESSLKHFQLALIDCNVCTLSSVEIQFHIAHLYETQRKYHSAKAAYEQLLQIE 230
Query: 153 DLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFA 212
LP +KA + +QLGWM+H +D +G+ + +E AI LQKS+E DP SGQS Y LGRC++
Sbjct: 231 SLPSQVKATVLQQLGWMHHNMDLIGDNTTKERYAIQYLQKSLEEDPNSGQSWYFLGRCYS 290
Query: 213 AVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242
+GKV DAF++YR S++KSE +ADTWCSIG
Sbjct: 291 CIGKVQDAFVSYRQSIDKSEASADTWCSIG 320
|
Histone demethylase. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: 4 EC: . EC: 1 EC: 1 EC: . EC: - |
| >sp|O60184|CYC8_SCHPO General transcriptional corepressor ssn6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ssn6 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 110 bits (274), Expect = 2e-23, Method: Composition-based stats.
Identities = 71/230 (30%), Positives = 114/230 (49%), Gaps = 45/230 (19%)
Query: 33 AIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGL 92
A + F Q L +DP++ + NE++ RLG+++K +++ +L+
Sbjct: 457 AEEAFMQCLRMDPNFEKVNEIYFRLGIIYKQQHKFAQSLE-------------------- 496
Query: 93 MFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKED 152
+H+ +D P T L++ F I H++E +++YK AK++YE++L E
Sbjct: 497 ----------LFRHI----LDNPPKPLTVLDIYFQIGHVYEQRKEYKLAKEAYERVLAET 542
Query: 153 DLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFA 212
P H A + +QLGW+ H + LAI L KS+EAD QS YL+GRC+
Sbjct: 543 --PNH--AKVLQQLGWLCH---QQSSSFTNQDLAIQYLTKSLEADDTDAQSWYLIGRCYV 595
Query: 213 AVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKY 262
A K + A+ AY+ +V + N WCSIG + N Y AL+ Y
Sbjct: 596 AQQKYNKAYEAYQQAVYRDGRNPTFWCSIGVLYYQINQ----YQDALDAY 641
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Acts as component of the ssn6-tup corepressor complexes, which are involved in the repression of many genes in a wide variety of physiological processes. May also be involved in the derepression of at least some target genes. The complex is recruited to target genes by interaction with DNA-bound transcriptional repressors. The complex recruits histone deacetylases to produce a repressive chromatin structure, interacts with hypoacetylated N-terminal tails of histones H3 and H4 that have been programmed for repression by the action of histone deacetylases and interferes directly with the transcriptional machinery by associating with the RNA polymerase II mediator complex. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|O77033|CYC8_DICDI General transcriptional corepressor trfA OS=Dictyostelium discoideum GN=trfA PE=2 SV=1 | Back alignment and function description |
|---|
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 114/216 (52%), Gaps = 16/216 (7%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-----IDASPCTF 86
KA +QQ LY P+ N + +G+++ YD A + T L + S +
Sbjct: 257 KAYTAYQQALYHLPNPKDPN-LWYGIGILYDRYGSYDHAEEAFTAVLKMDNKFEKSTEIY 315
Query: 87 TKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYE 146
+L G+++K +YD +L++ L+ P T ++ F I H++E+Q++Y +KD+YE
Sbjct: 316 FRL-GVLYKHQGKYDQSLEYFQ-HLVKNPPLPLTTSDIWFQIGHVYELQKEYHKSKDAYE 373
Query: 147 QLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYL 206
++LK D H K + +QLGW+YH + + AI+ L +SI++D Q+ YL
Sbjct: 374 KVLK--DNATHSK--VLQQLGWLYHHNPLFTNQEY----AINYLMRSIDSDSSDAQTWYL 425
Query: 207 LGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242
LGRC+ K A+ AY+ +V + N WCSIG
Sbjct: 426 LGRCYMTQQKYKKAYDAYQQAVYRDGRNPTFWCSIG 461
|
Acts as component of the trfA-tupA corepressor complex which is involved in the repression of many genes in a wide variety of physiological processes. May also be involved in the derepression of at least some target genes. The complex is recruited to target genes by interaction with DNA-bound transcriptional repressors. The complex recruits histone deacetylases to produce a repressive chromatin structure, interacts with hypoacetylated N-terminal tails of histones H3 and H4 that have been programmed for repression by the action of histone deacetylases and interferes directly with the transcriptional machinery by associating with the RNA polymerase II mediator complex (By similarity). Required for normal growth and for aggregation in early development. Required for a proper chemotactic response to cAMP. Dictyostelium discoideum (taxid: 44689) |
| >sp|P14922|CYC8_YEAST General transcriptional corepressor CYC8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CYC8 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 68.2 bits (165), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 94/210 (44%), Gaps = 41/210 (19%)
Query: 33 AIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGL 92
A + F ++L +DP + +ANE++ RLG+++K ++ AL+ C
Sbjct: 169 AEEAFAKVLELDPHFEKANEIYFRLGIIYKHQGKWSQALE-----------C-------- 209
Query: 93 MFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKED 152
F+ ++ P + ++ F + + E +++ AK++YE +L ++
Sbjct: 210 -FRY--------------ILPQPPAPLQEWDIWFQLGSVLESMGEWQGAKEAYEHVLAQN 254
Query: 153 DLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFA 212
A + +QLG +Y + + + A+ L KS+EADP + Y LGR
Sbjct: 255 ----QHHAKVLQQLGCLYGMSNV---QFYDPQKALDYLLKSLEADPSDATTWYHLGRVHM 307
Query: 213 AVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242
A+ A++ +V + N WCSIG
Sbjct: 308 IRTDYTAAYDAFQQAVNRDSRNPIFWCSIG 337
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Acts as component of the CYC8-TUP1 corepressor complex which is involved in the repression of many genes in a wide variety of physiological processes including heme-regulated and catabolite repressed genes. May also be involved in the derepression of at least some target genes. The complex is recruited to target genes by interaction with DNA-bound transcriptional repressors, like MATALPHA2, MIG1, RFX1 and SKO1. The complex recruits histone deacetylases to produce a repressive chromatin structure, interacts with hypoacetylated N-terminal tails of histones H3 and H4 that have been programmed for repression by the action of histone deacetylases and interferes directly with the transcriptional machinery by associating with the RNA polymerase II mediator complex. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|O34452|YRRB_BACSU TPR repeat-containing protein YrrB OS=Bacillus subtilis (strain 168) GN=yrrB PE=1 SV=1 | Back alignment and function description |
|---|
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 77/166 (46%), Gaps = 23/166 (13%)
Query: 100 YDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK 159
YD AL+ +D+S T + +++ V+ YK AKD +E+ L+
Sbjct: 47 YDKALE------LDSSAAT-----AYYGAGNVYVVKEMYKEAKDMFEKALR--------- 86
Query: 160 ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHD 219
+ G +++ + T+ K + LA+ LQ+++E + ++ + G C A G + +
Sbjct: 87 --AGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 144
Query: 220 AFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDL 265
A + E+ G+AD + + G ++ NRE + L+K D+
Sbjct: 145 ALSQFAAVTEQDPGHADAFYNAGVT-YAYKENREKALEMLDKAIDI 189
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Could be an interacting mediator in the complex formation among RNA sulfuration components, RNA processing components, and aminoacyl-tRNA synthetases. Bacillus subtilis (strain 168) (taxid: 224308) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 324 | ||||||
| 242025652 | 1230 | ubiquitously transcribed X chromosome te | 0.558 | 0.147 | 0.626 | 1e-73 | |
| 157136739 | 1080 | ubiquitously transcribed sex (x/y) chrom | 0.546 | 0.163 | 0.628 | 8e-71 | |
| 157135609 | 1119 | ubiquitously transcribed sex (x/y) chrom | 0.561 | 0.162 | 0.613 | 8e-70 | |
| 312381611 | 1384 | hypothetical protein AND_06052 [Anophele | 0.586 | 0.137 | 0.575 | 3e-68 | |
| 158296543 | 1029 | AGAP008509-PA [Anopheles gambiae str. PE | 0.546 | 0.172 | 0.604 | 1e-67 | |
| 350408486 | 1349 | PREDICTED: lysine-specific demethylase 6 | 0.546 | 0.131 | 0.607 | 4e-67 | |
| 383863015 | 1359 | PREDICTED: LOW QUALITY PROTEIN: lysine-s | 0.546 | 0.130 | 0.607 | 5e-67 | |
| 328720812 | 1224 | PREDICTED: lysine-specific demethylase 6 | 0.546 | 0.144 | 0.619 | 7e-67 | |
| 189233581 | 1276 | PREDICTED: similar to uty-prov protein [ | 0.546 | 0.138 | 0.585 | 4e-63 | |
| 358343297 | 1303 | Lysine-specific demethylase 6A [Medicago | 0.549 | 0.136 | 0.578 | 5e-63 |
| >gi|242025652|ref|XP_002433238.1| ubiquitously transcribed X chromosome tetratricopeptide repeat protein, putative [Pediculus humanus corporis] gi|212518779|gb|EEB20500.1| ubiquitously transcribed X chromosome tetratricopeptide repeat protein, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 134/214 (62%), Positives = 162/214 (75%), Gaps = 33/214 (15%)
Query: 29 LNIKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTK 88
+ + AIK+FQQ+LYV+P + R+NEVHLRLGLM
Sbjct: 1 MALMAIKSFQQVLYVEPGFSRSNEVHLRLGLM---------------------------- 32
Query: 89 LEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQL 148
FKV N+++S+LKHL L LID+SP +F+K+E++FHIAHL EVQ KYKTAKDSYE L
Sbjct: 33 -----FKVQNDWESSLKHLQLSLIDSSPSSFSKVEIKFHIAHLFEVQGKYKTAKDSYENL 87
Query: 149 LKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLG 208
LKE +LP HLKADICRQLGWM+HC+++LGEK +RE AI L+KSIEAD KSGQSLYLLG
Sbjct: 88 LKEKELPNHLKADICRQLGWMFHCVESLGEKVYRENQAIESLKKSIEADSKSGQSLYLLG 147
Query: 209 RCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242
RC+A++GKVHDAF+AYRNSVEKSEGNADTWCSIG
Sbjct: 148 RCYASIGKVHDAFIAYRNSVEKSEGNADTWCSIG 181
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157136739|ref|XP_001663821.1| ubiquitously transcribed sex (x/y) chromosome tetratricopeptide repeat protein [Aedes aegypti] gi|108869856|gb|EAT34081.1| AAEL013644-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 273 bits (698), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 132/210 (62%), Positives = 151/210 (71%), Gaps = 33/210 (15%)
Query: 33 AIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGL 92
+IK+FQQLLYV P + RANEVHLRLGLM
Sbjct: 9 SIKSFQQLLYVCPDFTRANEVHLRLGLML------------------------------- 37
Query: 93 MFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKED 152
KVN +Y+ +LKHL L D+SPCTF KLE+RFHIAHL+EVQ K+K A+++YEQLL +
Sbjct: 38 --KVNGDYEQSLKHLQLAYSDSSPCTFGKLEIRFHIAHLYEVQNKFKAAREAYEQLLGDK 95
Query: 153 DLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFA 212
L LKADICRQLGWMYH I+ LGEK+ RE AIHCLQKSIEADPKSGQ+LYLLGRCFA
Sbjct: 96 QLTPALKADICRQLGWMYHSIEPLGEKAQRERSAIHCLQKSIEADPKSGQTLYLLGRCFA 155
Query: 213 AVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242
+ KVHDAF+AYRNSVEKSEGNADTWCSIG
Sbjct: 156 GINKVHDAFIAYRNSVEKSEGNADTWCSIG 185
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157135609|ref|XP_001663509.1| ubiquitously transcribed sex (x/y) chromosome tetratricopeptide repeat protein [Aedes aegypti] gi|108870165|gb|EAT34390.1| AAEL013363-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 270 bits (689), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 132/215 (61%), Positives = 152/215 (70%), Gaps = 33/215 (15%)
Query: 28 TLNIKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFT 87
L+ +IK+FQQLLYV P + RANEVHLRLGLM
Sbjct: 27 ALSAWSIKSFQQLLYVCPDFTRANEVHLRLGLML-------------------------- 60
Query: 88 KLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQ 147
KVN +Y+ +LKHL L D+SPCTF KLE+RFHIAHL+EVQ K+K A+++YEQ
Sbjct: 61 -------KVNGDYEQSLKHLQLAYSDSSPCTFGKLEIRFHIAHLYEVQNKFKAAREAYEQ 113
Query: 148 LLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLL 207
LL + L LKADICRQLGWMYH I+ LGEK+ RE AIHCLQKSIEAD KSGQ+LYLL
Sbjct: 114 LLGDKQLTPALKADICRQLGWMYHSIEPLGEKAQRERSAIHCLQKSIEADSKSGQTLYLL 173
Query: 208 GRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242
GRCFA + KVHDAF+AYRNSVEKSEGNADTWCSIG
Sbjct: 174 GRCFAGINKVHDAFIAYRNSVEKSEGNADTWCSIG 208
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|312381611|gb|EFR27321.1| hypothetical protein AND_06052 [Anopheles darlingi] | Back alignment and taxonomy information |
|---|
Score = 265 bits (676), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 129/224 (57%), Positives = 155/224 (69%), Gaps = 34/224 (15%)
Query: 19 VPKLQQFGKTLNIKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL 78
+P+ Q + +AIK+FQ+LLYV P + RANEVHLR+GLM
Sbjct: 52 LPQPPQLTRGF-AEAIKSFQKLLYVCPDFTRANEVHLRIGLML----------------- 93
Query: 79 IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKY 138
KVN +YD +LKHL L L D+SPCT TK ++RFH+AHL+EVQ KY
Sbjct: 94 ----------------KVNADYDQSLKHLQLALNDSSPCTLTKSDIRFHVAHLYEVQNKY 137
Query: 139 KTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADP 198
+ AK++YE+LL L LKADI RQLGWMYH +D LG+K RE LAIHCLQKSIEA+P
Sbjct: 138 RPAKEAYERLLASKQLTASLKADIYRQLGWMYHTVDILGDKVQRERLAIHCLQKSIEAEP 197
Query: 199 KSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242
+SGQ+LYLLGRCFA + KVHDAF+AYRNSVEKSEGNADTWCSIG
Sbjct: 198 RSGQTLYLLGRCFAGINKVHDAFIAYRNSVEKSEGNADTWCSIG 241
|
Source: Anopheles darlingi Species: Anopheles darlingi Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|158296543|ref|XP_316935.4| AGAP008509-PA [Anopheles gambiae str. PEST] gi|157014760|gb|EAA12210.5| AGAP008509-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 262 bits (670), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 127/210 (60%), Positives = 151/210 (71%), Gaps = 33/210 (15%)
Query: 33 AIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGL 92
AIK+FQ+LLYV P ++RANEVHLRLGLM
Sbjct: 1 AIKSFQKLLYVCPDFVRANEVHLRLGLML------------------------------- 29
Query: 93 MFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKED 152
KVN +Y+ +LKHL L L D+SPCT +LE+RFH+AHL+EVQ KY+TAK++YE+LL
Sbjct: 30 --KVNGDYEQSLKHLQLALNDSSPCTLAQLEIRFHVAHLYEVQNKYRTAKEAYERLLASK 87
Query: 153 DLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFA 212
L LKADI RQLGWMYH ++ LG+K RE LAIHCLQKSIEA+P+SGQ+LYLLGRCFA
Sbjct: 88 QLTSSLKADIYRQLGWMYHTVELLGDKVQRERLAIHCLQKSIEAEPRSGQTLYLLGRCFA 147
Query: 213 AVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242
+ KVHDAF+AYRNSVEKSEGNADTWCSIG
Sbjct: 148 GINKVHDAFIAYRNSVEKSEGNADTWCSIG 177
|
Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350408486|ref|XP_003488419.1| PREDICTED: lysine-specific demethylase 6A-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 261 bits (666), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 130/214 (60%), Positives = 154/214 (71%), Gaps = 37/214 (17%)
Query: 33 AIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGL 92
A+K FQQ+L+V+P + RA EVHLRLGLM
Sbjct: 145 AVKAFQQVLWVEPGFPRACEVHLRLGLML------------------------------- 173
Query: 93 MFKVNNEYDSALKHLTLCLIDAS-PCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKE 151
KV+ ++D+ALKHLTL LIDA+ P +F+KLE++FHIAHL+EVQ KY+ AK+ YE LLKE
Sbjct: 174 --KVHADFDAALKHLTLALIDATTPASFSKLEIKFHIAHLYEVQGKYRLAKEHYEALLKE 231
Query: 152 DDLPVHLKADICRQLGWMYHCID--TLG-EKSHRETLAIHCLQKSIEADPKSGQSLYLLG 208
LP HLKADICRQLGWMYH +D LG + ++ +AIHCLQKSIEA+PKSGQSLYLLG
Sbjct: 232 KTLPSHLKADICRQLGWMYHVVDCTVLGITRQQKQAIAIHCLQKSIEAEPKSGQSLYLLG 291
Query: 209 RCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242
RC AA GKVHDAF+AYRNSVEKSEGNADTWCSIG
Sbjct: 292 RCLAASGKVHDAFIAYRNSVEKSEGNADTWCSIG 325
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383863015|ref|XP_003706978.1| PREDICTED: LOW QUALITY PROTEIN: lysine-specific demethylase 6A-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 260 bits (665), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 130/214 (60%), Positives = 154/214 (71%), Gaps = 37/214 (17%)
Query: 33 AIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGL 92
A+K FQQ+L+V+P + RA EVHLRLGLM
Sbjct: 145 AVKAFQQVLWVEPGFPRACEVHLRLGLML------------------------------- 173
Query: 93 MFKVNNEYDSALKHLTLCLIDAS-PCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKE 151
KV+ ++D+ALKHLTL LIDA+ P +F+KLE++FHIAHL+EVQ KY+ AK+ YE LLKE
Sbjct: 174 --KVHADFDAALKHLTLALIDATTPASFSKLEIKFHIAHLYEVQGKYRLAKEHYEALLKE 231
Query: 152 DDLPVHLKADICRQLGWMYHCID--TLG-EKSHRETLAIHCLQKSIEADPKSGQSLYLLG 208
LP HLKADICRQLGWMYH +D LG + ++ +AIHCLQKSIEA+PKSGQSLYLLG
Sbjct: 232 KTLPSHLKADICRQLGWMYHVVDCTVLGITRQQKQAIAIHCLQKSIEAEPKSGQSLYLLG 291
Query: 209 RCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242
RC AA GKVHDAF+AYRNSVEKSEGNADTWCSIG
Sbjct: 292 RCLAASGKVHDAFIAYRNSVEKSEGNADTWCSIG 325
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328720812|ref|XP_001944528.2| PREDICTED: lysine-specific demethylase 6A-like isoform 1 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 260 bits (664), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 130/210 (61%), Positives = 152/210 (72%), Gaps = 33/210 (15%)
Query: 33 AIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGL 92
+I+ FQ+LLY+DP+Y RANEVHLRLGLM+
Sbjct: 130 SIQFFQKLLYIDPNYQRANEVHLRLGLMY------------------------------- 158
Query: 93 MFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKED 152
KV NE+++ALKHL D S TF+KLE+ FHIAHL+EVQ KYK AKD YEQLL +
Sbjct: 159 --KVFNEWETALKHLKHAYSDVSLSTFSKLEISFHIAHLYEVQGKYKLAKDHYEQLLNDS 216
Query: 153 DLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFA 212
+ VHL+ADICRQLGWMYH + LG+K+HRET+AI LQKSIEAD KSGQSLYLLGRC+A
Sbjct: 217 KITVHLRADICRQLGWMYHSCECLGDKNHRETVAIQYLQKSIEADNKSGQSLYLLGRCYA 276
Query: 213 AVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242
+VGKVHDAF+AYRNSVEKSEGNADTWCSIG
Sbjct: 277 SVGKVHDAFIAYRNSVEKSEGNADTWCSIG 306
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|189233581|ref|XP_968647.2| PREDICTED: similar to uty-prov protein [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 247 bits (631), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 123/210 (58%), Positives = 147/210 (70%), Gaps = 33/210 (15%)
Query: 33 AIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGL 92
A+K FQQLLYV PS+ RANEVHLRLGLMFK EY+SALKHL L L+D SPC+
Sbjct: 146 AVKAFQQLLYVSPSFQRANEVHLRLGLMFKATQEYESALKHLQLALVDNSPCS------- 198
Query: 93 MFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKED 152
+P + ++FHIAHL EVQ K K AKD YE LL++
Sbjct: 199 ----------------------TPKSI----IKFHIAHLFEVQGKVKGAKDRYELLLRDK 232
Query: 153 DLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFA 212
+ L+ADI RQLGW+YHC D+LG+K+ R LAIHCLQ++ EAD SGQ+LYLLGRC+A
Sbjct: 233 TITQTLRADIFRQLGWLYHCHDSLGDKNQRIPLAIHCLQRAHEADQFSGQTLYLLGRCYA 292
Query: 213 AVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242
++GKVHDAF+AYRNSVEKSEGNADTWCSIG
Sbjct: 293 SIGKVHDAFIAYRNSVEKSEGNADTWCSIG 322
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|358343297|ref|XP_003635741.1| Lysine-specific demethylase 6A [Medicago truncatula] gi|355501676|gb|AES82879.1| Lysine-specific demethylase 6A [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 247 bits (631), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 122/211 (57%), Positives = 147/211 (69%), Gaps = 33/211 (15%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEG 91
+A++ FQQ+LYVDP + RANEVHLRLGLM
Sbjct: 21 RAVRAFQQVLYVDPVFQRANEVHLRLGLM------------------------------- 49
Query: 92 LMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKE 151
FKVNN+ +SALKHL L +DASP TF KLE++FHIAHL+EVQ+K+K AK+ YEQLLKE
Sbjct: 50 --FKVNNDPESALKHLKLSYVDASPSTFCKLEIQFHIAHLYEVQKKHKLAKELYEQLLKE 107
Query: 152 DDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCF 211
DLP+HLKADI RQLGWMYH ++ G K+ R TLAI CL+KS+EAD SGQ+LYLLGRC+
Sbjct: 108 KDLPLHLKADIYRQLGWMYHNVEAFGSKTERMTLAIRCLEKSLEADRNSGQTLYLLGRCY 167
Query: 212 AAVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242
A++GK AF AYRN VEK+ AD WCSIG
Sbjct: 168 ASIGKADHAFDAYRNVVEKTTPTADVWCSIG 198
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 324 | ||||||
| MGI|MGI:1095419 | 1401 | Kdm6a "lysine (K)-specific dem | 0.716 | 0.165 | 0.470 | 1.1e-52 | |
| UNIPROTKB|O14607 | 1347 | UTY "Histone demethylase UTY" | 0.716 | 0.172 | 0.470 | 1.2e-52 | |
| UNIPROTKB|O15550 | 1401 | KDM6A "Lysine-specific demethy | 0.716 | 0.165 | 0.466 | 1.4e-52 | |
| RGD|1565481 | 1395 | Kdm6a "lysine (K)-specific dem | 0.716 | 0.166 | 0.466 | 2.2e-52 | |
| UNIPROTKB|G3N2E9 | 1422 | UTY "Uncharacterized protein" | 0.716 | 0.163 | 0.462 | 2.3e-52 | |
| FB|FBgn0260749 | 1136 | Utx [Drosophila melanogaster ( | 0.469 | 0.133 | 0.684 | 2.7e-52 | |
| ZFIN|ZDB-GENE-070112-2002 | 1311 | kdm6al "lysine (K)-specific de | 0.651 | 0.160 | 0.460 | 4.3e-50 | |
| MGI|MGI:894810 | 1212 | Uty "ubiquitously transcribed | 0.716 | 0.191 | 0.441 | 6.9e-49 | |
| UNIPROTKB|F1MV76 | 1343 | F1MV76 "Uncharacterized protei | 0.716 | 0.172 | 0.424 | 2.1e-47 | |
| DICTYBASE|DDB_G0269194 | 1390 | trfA "homologous to yeast Ssn6 | 0.666 | 0.155 | 0.309 | 1.9e-24 |
| MGI|MGI:1095419 Kdm6a "lysine (K)-specific demethylase 6A" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 558 (201.5 bits), Expect = 1.1e-52, P = 1.1e-52
Identities = 112/238 (47%), Positives = 158/238 (66%)
Query: 11 EGIVTSVRVPKLQQFGKTLNI--KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYD 68
EG V S +L F L KA+ +Q+ + Y + LGL++ N +
Sbjct: 90 EGKVESDFFCQLGHFNLLLEDYPKALSAYQRYYSLQSDYWKNAAFLYGLGLVYFHYNAFQ 149
Query: 69 SALKHLTLCL-IDASPCTFTKLE---GLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEV 124
A+K L +D S C ++ GLMFKVN +Y+S+LKH L L+D +PCT + E+
Sbjct: 150 WAIKAFQEVLYVDPSFCRAKEIHLRLGLMFKVNTDYESSLKHFQLALVDCNPCTLSNAEI 209
Query: 125 RFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRET 184
+FHIAHL+E QRKY +AK++YEQLL+ ++L +KA I +QLGWM+H +D LG+K+ +E+
Sbjct: 210 QFHIAHLYETQRKYHSAKEAYEQLLQTENLSAQVKATILQQLGWMHHTVDLLGDKATKES 269
Query: 185 LAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242
AI LQKS+EADP SGQS Y LGRC++++GKV DAF++YR S++KSE +ADTWCSIG
Sbjct: 270 YAIQYLQKSLEADPNSGQSWYFLGRCYSSIGKVQDAFISYRQSIDKSEASADTWCSIG 327
|
|
| UNIPROTKB|O14607 UTY "Histone demethylase UTY" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 557 (201.1 bits), Expect = 1.2e-52, P = 1.2e-52
Identities = 112/238 (47%), Positives = 158/238 (66%)
Query: 11 EGIVTSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYD 68
EG V S +L F L KA+ +Q+ + Y + LGL++ N +
Sbjct: 85 EGKVESDFFCQLGHFNLLLEDYSKALSAYQRYYSLQADYWKNAAFLYGLGLVYFYYNAFH 144
Query: 69 SALKHLTLCL-IDASPCTFTKLE---GLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEV 124
A+K L +D S C ++ GLMFKVN +Y S+LKH L LID +PCT + E+
Sbjct: 145 WAIKAFQDVLYVDPSFCRAKEIHLRLGLMFKVNTDYKSSLKHFQLALIDCNPCTLSNAEI 204
Query: 125 RFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRET 184
+FHIAHL+E QRKY +AK++YEQLL+ ++LP +KA + +QLGWM+H +D +G+K+ +E+
Sbjct: 205 QFHIAHLYETQRKYHSAKEAYEQLLQTENLPAQVKATVLQQLGWMHHNMDLVGDKATKES 264
Query: 185 LAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242
AI LQKS+EADP SGQS Y LGRC++++GKV DAF++YR S++KSE +ADTWCSIG
Sbjct: 265 YAIQYLQKSLEADPNSGQSWYFLGRCYSSIGKVQDAFISYRQSIDKSEASADTWCSIG 322
|
|
| UNIPROTKB|O15550 KDM6A "Lysine-specific demethylase 6A" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 557 (201.1 bits), Expect = 1.4e-52, P = 1.4e-52
Identities = 111/238 (46%), Positives = 158/238 (66%)
Query: 11 EGIVTSVRVPKLQQFGKTLNI--KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYD 68
EG V S +L F L KA+ +Q+ + Y + LGL++ N +
Sbjct: 88 EGKVESDFFCQLGHFNLLLEDYPKALSAYQRYYSLQSDYWKNAAFLYGLGLVYFHYNAFQ 147
Query: 69 SALKHLTLCL-IDASPCTFTKLE---GLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEV 124
A+K L +D S C ++ GLMFKVN +Y+S+LKH L L+D +PCT + E+
Sbjct: 148 WAIKAFQEVLYVDPSFCRAKEIHLRLGLMFKVNTDYESSLKHFQLALVDCNPCTLSNAEI 207
Query: 125 RFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRET 184
+FHIAHL+E QRKY +AK++YEQLL+ ++L +KA + +QLGWM+H +D LG+K+ +E+
Sbjct: 208 QFHIAHLYETQRKYHSAKEAYEQLLQTENLSAQVKATVLQQLGWMHHTVDLLGDKATKES 267
Query: 185 LAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242
AI LQKS+EADP SGQS Y LGRC++++GKV DAF++YR S++KSE +ADTWCSIG
Sbjct: 268 YAIQYLQKSLEADPNSGQSWYFLGRCYSSIGKVQDAFISYRQSIDKSEASADTWCSIG 325
|
|
| RGD|1565481 Kdm6a "lysine (K)-specific demethylase 6A" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 555 (200.4 bits), Expect = 2.2e-52, P = 2.2e-52
Identities = 111/238 (46%), Positives = 158/238 (66%)
Query: 11 EGIVTSVRVPKLQQFGKTLNI--KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYD 68
EG V S +L F L KA+ +Q+ + Y + LGL++ N +
Sbjct: 87 EGKVESDFFCQLGHFNLLLEEYPKALSAYQRYYSLQSDYWKNAAFLYGLGLVYFHYNAFQ 146
Query: 69 SALKHLTLCL-IDASPCTFTKLE---GLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEV 124
A+K L +D S C ++ GLMFKVN +Y+S+LKH L L+D +PCT + E+
Sbjct: 147 WAIKAFQEVLYVDPSFCRAKEIHLRLGLMFKVNTDYESSLKHFQLALVDCNPCTLSNAEI 206
Query: 125 RFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRET 184
+FHIAHL+E QRKY +AK++YEQLL+ ++L +KA + +QLGWM+H +D LG+K+ +E+
Sbjct: 207 QFHIAHLYETQRKYHSAKEAYEQLLQLENLSAQVKATVLQQLGWMHHTVDLLGDKATKES 266
Query: 185 LAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242
AI LQKS+EADP SGQS Y LGRC++++GKV DAF++YR S++KSE +ADTWCSIG
Sbjct: 267 YAIQYLQKSLEADPNSGQSWYFLGRCYSSIGKVQDAFISYRQSIDKSEASADTWCSIG 324
|
|
| UNIPROTKB|G3N2E9 UTY "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 555 (200.4 bits), Expect = 2.3e-52, P = 2.3e-52
Identities = 110/238 (46%), Positives = 160/238 (67%)
Query: 11 EGIVTSVRVPKLQQFGKTLNI--KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYD 68
EG V S +L F L KA+ +Q+ + Y + LGL++ N +
Sbjct: 64 EGKVESEFFCQLGHFNLLLEDYPKALSAYQRYYSLQSDYWKNAAFLYGLGLVYFYYNAFH 123
Query: 69 SALKHLTLCL-IDASPCTFTKLE---GLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEV 124
A+K L ++ S C ++ GLMFKVN +Y+S+LKH L LID++PCT + +E+
Sbjct: 124 WAIKAFQEVLYVEPSFCRAKEIHLRLGLMFKVNTDYESSLKHFQLALIDSNPCTLSSVEI 183
Query: 125 RFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRET 184
+FHIAHL+E QR Y +AK++YEQLL+ ++LP +KA + +QLGWM+H +D LG+++ +E+
Sbjct: 184 QFHIAHLYETQRMYHSAKEAYEQLLQTENLPAQVKATVLQQLGWMHHNVDLLGDQATKES 243
Query: 185 LAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242
AI LQKS+EADP SGQS Y LGRC++++GKV DAF++YR S++KSE +ADTWCSIG
Sbjct: 244 CAIQYLQKSLEADPNSGQSWYFLGRCYSSIGKVQDAFISYRQSIDKSEASADTWCSIG 301
|
|
| FB|FBgn0260749 Utx [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 552 (199.4 bits), Expect = 2.7e-52, P = 2.7e-52
Identities = 104/152 (68%), Positives = 122/152 (80%)
Query: 91 GLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLK 150
GLM K E+ ALKHL L L+ P TF++L+V+F IAHL+EVQ K+K AKD YE LL
Sbjct: 196 GLMLKHCGEFHIALKHLQLALLYTYPSTFSELQVKFQIAHLYEVQNKHKAAKDGYEFLLN 255
Query: 151 EDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRC 210
E ++ + LKAD+ RQLGWMYHC++ LGEK RE A++ LQKSIEADPKSGQSLYLLGRC
Sbjct: 256 EKNISLELKADVYRQLGWMYHCVECLGEKKEREANALNFLQKSIEADPKSGQSLYLLGRC 315
Query: 211 FAAVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242
+A + KVHDAFLAYRNSVEKSEGNADTWCSIG
Sbjct: 316 YAGINKVHDAFLAYRNSVEKSEGNADTWCSIG 347
|
|
| ZFIN|ZDB-GENE-070112-2002 kdm6al "lysine (K)-specific demethylase 6A, like" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 533 (192.7 bits), Expect = 4.3e-50, P = 4.3e-50
Identities = 99/215 (46%), Positives = 150/215 (69%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLE 90
KA+ +Q+ + Y + LG+++ N + A+K L ID ++
Sbjct: 111 KALSAYQRYYSLQSDYWKNAAFLYGLGMVYFHYNAFQWAIKAFQEVLYIDPGFSRAKEIH 170
Query: 91 ---GLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQ 147
GLMFKVN +Y+S+LKH L LID+S CT +K E++FHIAHL+E+Q++++ AK++YE
Sbjct: 171 LRLGLMFKVNTDYESSLKHFQLALIDSSRCTLSKAEIQFHIAHLYEIQKRHRAAKEAYES 230
Query: 148 LLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLL 207
LL+ +DL ++A +QLGWM+H ++ LG+K+++++ AI CLQKS+EADP SGQS Y L
Sbjct: 231 LLQTEDLQTPVRAAALQQLGWMHHTVEQLGDKANKDSYAIQCLQKSLEADPNSGQSWYFL 290
Query: 208 GRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242
GRC++++GKV DAF++YR S++KSE +ADTWCSIG
Sbjct: 291 GRCYSSIGKVQDAFISYRQSIDKSEASADTWCSIG 325
|
|
| MGI|MGI:894810 Uty "ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 521 (188.5 bits), Expect = 6.9e-49, P = 6.9e-49
Identities = 105/238 (44%), Positives = 153/238 (64%)
Query: 11 EGIVTSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYD 68
EG V S +L F L KA+ ++Q+ + Y + LGL++ N +
Sbjct: 83 EGKVESDFFCQLGHFNLLLEDYSKALSSYQRYYSLQTDYWKNAAFLYGLGLVYFYYNAFQ 142
Query: 69 SALKHLTLCL-IDASPCTFTKLE---GLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEV 124
A++ L +D + C ++ G MFK+N +Y+S+LKH L LID + CT + +E+
Sbjct: 143 WAIRAFQEVLYVDPNFCRAKEIHLRLGFMFKMNTDYESSLKHFQLALIDCNVCTLSSVEI 202
Query: 125 RFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRET 184
+FHIAHL+E QRKY +AK +YEQLL+ + LP +KA + +QLGWM+H +D +G+ + +E
Sbjct: 203 QFHIAHLYETQRKYHSAKAAYEQLLQIESLPSQVKATVLQQLGWMHHNMDLIGDNTTKER 262
Query: 185 LAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242
AI LQKS+E DP SGQS Y LGRC++ +GKV DAF++YR S++KSE +ADTWCSIG
Sbjct: 263 YAIQYLQKSLEEDPNSGQSWYFLGRCYSCIGKVQDAFVSYRQSIDKSEASADTWCSIG 320
|
|
| UNIPROTKB|F1MV76 F1MV76 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 508 (183.9 bits), Expect = 2.1e-47, P = 2.1e-47
Identities = 101/238 (42%), Positives = 152/238 (63%)
Query: 11 EGIVTSVRVPKLQQFGKTLNI--KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYD 68
EG V S +L F L KA+ +Q+ + Y + ++ L ++++ Y
Sbjct: 13 EGKVESDFFCQLGHFNLLLEDYPKALSAYQRYYSLQSDYWKNLKIMQLLSVIYREFTSYH 72
Query: 69 SALKHL-TLCLIDASPCTFTKLE---GLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEV 124
S + L T+ C +L+ + KV+ + +S KH L L+D +PCT + E+
Sbjct: 73 SFISSLQTVGFFSPLHCETKELDFPLQIEMKVDKQNESVSKHFQLALVDCNPCTLSNAEI 132
Query: 125 RFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRET 184
+FHIAHL+E QRKY +AK++YEQLL+ ++L +KA + +QLGWM+H +D LG+K+ +E+
Sbjct: 133 QFHIAHLYETQRKYHSAKEAYEQLLQTENLSAQVKATVLQQLGWMHHTVDLLGDKATKES 192
Query: 185 LAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242
AI LQKS+EADP SGQS Y LGRC++++GKV DAF++YR S++KSE +ADTWCSIG
Sbjct: 193 YAIQYLQKSLEADPNSGQSWYFLGRCYSSIGKVQDAFISYRQSIDKSEASADTWCSIG 250
|
|
| DICTYBASE|DDB_G0269194 trfA "homologous to yeast Ssn6" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 275 (101.9 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
Identities = 73/236 (30%), Positives = 122/236 (51%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-----IDASPCTF 86
KA +QQ LY P+ N + +G+++ YD A + T L + S +
Sbjct: 257 KAYTAYQQALYHLPNPKDPN-LWYGIGILYDRYGSYDHAEEAFTAVLKMDNKFEKSTEIY 315
Query: 87 TKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYE 146
+L G+++K +YD +L++ L+ P T ++ F I H++E+Q++Y +KD+YE
Sbjct: 316 FRL-GVLYKHQGKYDQSLEYFQH-LVKNPPLPLTTSDIWFQIGHVYELQKEYHKSKDAYE 373
Query: 147 QLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYL 206
++LK++ H K + +QLGW+YH + + AI+ L +SI++D Q+ YL
Sbjct: 374 KVLKDN--ATHSK--VLQQLGWLYHHNPLFTNQEY----AINYLMRSIDSDSSDAQTWYL 425
Query: 207 LGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKY 262
LGRC+ K A+ AY+ +V + N WCSIG + N Y AL+ Y
Sbjct: 426 LGRCYMTQQKYKKAYDAYQQAVYRDGRNPTFWCSIGVLYYQINQ----YRDALDAY 477
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O15550 | KDM6A_HUMAN | 1, ., 1, 4, ., 1, 1, ., - | 0.5142 | 0.5462 | 0.1263 | yes | N/A |
| O70546 | KDM6A_MOUSE | 1, ., 1, 4, ., 1, 1, ., - | 0.5190 | 0.5462 | 0.1263 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 324 | |||
| COG2956 | 389 | COG2956, COG2956, Predicted N-acetylglucosaminyl t | 8e-05 | |
| COG4235 | 287 | COG4235, COG4235, Cytochrome c biogenesis factor [ | 6e-04 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 0.002 |
| >gnl|CDD|225504 COG2956, COG2956, Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 8e-05
Identities = 49/208 (23%), Positives = 89/208 (42%), Gaps = 28/208 (13%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALK-HLTLCLIDASPCTFTKLE 90
KA+ F ++L DP E HL LG +F+ E D A++ H TL +++ TF +
Sbjct: 53 KAVDLFLEMLQEDPETF---EAHLTLGNLFRSRGEVDRAIRIHQTL--LESPDLTFEQRL 107
Query: 91 GLMFKVNNEYDSALKHLTLCLIDASPCTFTKL--------EVRFHIAHLHEVQRKYKTAK 142
+ ++ +Y +A L+D + F +L + ++++ R+++ A
Sbjct: 108 LALQQLGRDYMAA------GLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAI 161
Query: 143 DSYEQLLKEDDLPVHLK-ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG 201
D E+L+K ++ A +L L A L+K+++AD K
Sbjct: 162 DVAERLVKLGGQTYRVEIAQFYCELAQQA-----LASSDVDR--ARELLKKALQADKKCV 214
Query: 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVE 229
++ +LGR A G A A +E
Sbjct: 215 RASIILGRVELAKGDYQKAVEALERVLE 242
|
Length = 389 |
| >gnl|CDD|226687 COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 6e-04
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 190 LQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242
L+ ++ +P + LLGR + A+G+ DA LAYRN++ + N + +
Sbjct: 145 LETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLA 197
|
Length = 287 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 37.0 bits (86), Expect = 0.002
Identities = 15/58 (25%), Positives = 29/58 (50%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243
A+ +K++E DP + + Y L + +GK +A Y ++E NA + ++G
Sbjct: 19 ALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGL 76
|
Length = 100 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 324 | |||
| KOG4626|consensus | 966 | 100.0 | ||
| KOG4626|consensus | 966 | 100.0 | ||
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.97 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.97 | |
| KOG1126|consensus | 638 | 99.96 | ||
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.96 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.96 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.96 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.95 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.95 | |
| KOG1155|consensus | 559 | 99.94 | ||
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.93 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.93 | |
| KOG1126|consensus | 638 | 99.93 | ||
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.92 | |
| KOG1155|consensus | 559 | 99.91 | ||
| KOG0547|consensus | 606 | 99.91 | ||
| KOG2002|consensus | 1018 | 99.9 | ||
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.9 | |
| KOG0547|consensus | 606 | 99.9 | ||
| KOG1129|consensus | 478 | 99.9 | ||
| KOG2076|consensus | 895 | 99.9 | ||
| KOG2002|consensus | 1018 | 99.89 | ||
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.89 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.89 | |
| KOG1173|consensus | 611 | 99.89 | ||
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.88 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.88 | |
| KOG0624|consensus | 504 | 99.88 | ||
| KOG1173|consensus | 611 | 99.87 | ||
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.87 | |
| KOG1125|consensus | 579 | 99.87 | ||
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.86 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.86 | |
| KOG0624|consensus | 504 | 99.86 | ||
| KOG1129|consensus | 478 | 99.86 | ||
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.86 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.85 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.84 | |
| KOG1174|consensus | 564 | 99.84 | ||
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.83 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.82 | |
| KOG1125|consensus | 579 | 99.82 | ||
| KOG4162|consensus | 799 | 99.82 | ||
| KOG2003|consensus | 840 | 99.82 | ||
| KOG2003|consensus | 840 | 99.81 | ||
| KOG1840|consensus | 508 | 99.81 | ||
| PLN02789 | 320 | farnesyltranstransferase | 99.8 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.8 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.79 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.79 | |
| KOG2076|consensus | 895 | 99.77 | ||
| KOG0550|consensus | 486 | 99.77 | ||
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.76 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.76 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.74 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.74 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.73 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.73 | |
| KOG0548|consensus | 539 | 99.71 | ||
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.7 | |
| KOG0495|consensus | 913 | 99.7 | ||
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.7 | |
| KOG1840|consensus | 508 | 99.69 | ||
| KOG4162|consensus | 799 | 99.67 | ||
| KOG0550|consensus | 486 | 99.67 | ||
| KOG1130|consensus | 639 | 99.67 | ||
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.67 | |
| KOG1127|consensus | 1238 | 99.66 | ||
| KOG0495|consensus | 913 | 99.66 | ||
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.65 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.64 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.62 | |
| KOG1174|consensus | 564 | 99.62 | ||
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.61 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.6 | |
| KOG0548|consensus | 539 | 99.6 | ||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.59 | |
| KOG1156|consensus | 700 | 99.59 | ||
| KOG1127|consensus | 1238 | 99.59 | ||
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.58 | |
| KOG3060|consensus | 289 | 99.56 | ||
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.55 | |
| KOG0553|consensus | 304 | 99.54 | ||
| KOG3060|consensus | 289 | 99.54 | ||
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.53 | |
| KOG1156|consensus | 700 | 99.52 | ||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.52 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.52 | |
| KOG0553|consensus | 304 | 99.52 | ||
| KOG1128|consensus | 777 | 99.52 | ||
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.51 | |
| KOG1128|consensus | 777 | 99.51 | ||
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.5 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.49 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.48 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.46 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.46 | |
| KOG1130|consensus | 639 | 99.44 | ||
| PLN03077 | 857 | Protein ECB2; Provisional | 99.43 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.43 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.4 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.37 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.36 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.36 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 99.35 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.35 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.32 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.32 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.31 | |
| KOG3785|consensus | 557 | 99.31 | ||
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.3 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.28 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 99.27 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.24 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.24 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 99.24 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.22 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.22 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.22 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.22 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 99.22 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.21 | |
| KOG2376|consensus | 652 | 99.21 | ||
| KOG4340|consensus | 459 | 99.2 | ||
| KOG1915|consensus | 677 | 99.19 | ||
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.18 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.18 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 99.17 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 99.17 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.16 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.16 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 99.16 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 99.16 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.15 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 99.15 | |
| KOG2376|consensus | 652 | 99.15 | ||
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 99.15 | |
| KOG3785|consensus | 557 | 99.13 | ||
| KOG1915|consensus | 677 | 99.13 | ||
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.13 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 99.13 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 99.12 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 99.1 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 99.09 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 99.07 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 99.06 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 99.05 | |
| KOG4340|consensus | 459 | 99.05 | ||
| KOG1941|consensus | 518 | 99.02 | ||
| KOG0543|consensus | 397 | 99.02 | ||
| KOG2047|consensus | 835 | 99.02 | ||
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 99.02 | |
| KOG2047|consensus | 835 | 99.01 | ||
| PRK15331 | 165 | chaperone protein SicA; Provisional | 99.01 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 99.01 | |
| KOG0543|consensus | 397 | 99.0 | ||
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.99 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.99 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.99 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.97 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.96 | |
| KOG3081|consensus | 299 | 98.94 | ||
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.94 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.93 | |
| KOG1941|consensus | 518 | 98.9 | ||
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.89 | |
| KOG4234|consensus | 271 | 98.89 | ||
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.88 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.88 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.87 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.86 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.85 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.81 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.77 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 98.75 | |
| KOG4234|consensus | 271 | 98.73 | ||
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.72 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.71 | |
| KOG4648|consensus | 536 | 98.69 | ||
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 98.68 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.63 | |
| KOG1070|consensus | 1710 | 98.63 | ||
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.62 | |
| KOG1070|consensus | 1710 | 98.62 | ||
| KOG4555|consensus | 175 | 98.61 | ||
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 98.61 | |
| KOG3617|consensus | 1416 | 98.58 | ||
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.56 | |
| KOG1586|consensus | 288 | 98.56 | ||
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.56 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.56 | |
| KOG4648|consensus | 536 | 98.55 | ||
| KOG3617|consensus | 1416 | 98.55 | ||
| KOG2471|consensus | 696 | 98.53 | ||
| KOG1586|consensus | 288 | 98.49 | ||
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.46 | |
| KOG3081|consensus | 299 | 98.44 | ||
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.43 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.41 | |
| KOG2053|consensus | 932 | 98.39 | ||
| KOG2796|consensus | 366 | 98.38 | ||
| KOG2796|consensus | 366 | 98.38 | ||
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 98.34 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.34 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 98.33 | |
| KOG1585|consensus | 308 | 98.28 | ||
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 98.25 | |
| KOG1585|consensus | 308 | 98.23 | ||
| KOG1550|consensus | 552 | 98.23 | ||
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 98.21 | |
| KOG4555|consensus | 175 | 98.17 | ||
| KOG2471|consensus | 696 | 98.16 | ||
| KOG4642|consensus | 284 | 98.16 | ||
| KOG4642|consensus | 284 | 98.14 | ||
| KOG2300|consensus | 629 | 98.13 | ||
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 98.12 | |
| KOG2053|consensus | 932 | 98.11 | ||
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 98.11 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 98.09 | |
| KOG2610|consensus | 491 | 98.09 | ||
| KOG0551|consensus | 390 | 98.06 | ||
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.03 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 98.0 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 98.0 | |
| KOG2610|consensus | 491 | 97.96 | ||
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.9 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 97.88 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.87 | |
| KOG0376|consensus | 476 | 97.86 | ||
| KOG0376|consensus | 476 | 97.84 | ||
| KOG0545|consensus | 329 | 97.83 | ||
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.82 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.81 | |
| KOG4507|consensus | 886 | 97.81 | ||
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 97.81 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.77 | |
| KOG0551|consensus | 390 | 97.7 | ||
| KOG3616|consensus | 1636 | 97.68 | ||
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 97.67 | |
| KOG0545|consensus | 329 | 97.67 | ||
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.67 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.61 | |
| KOG0985|consensus | 1666 | 97.6 | ||
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.59 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 97.57 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.56 | |
| KOG1550|consensus | 552 | 97.55 | ||
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 97.51 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 97.44 | |
| KOG0530|consensus | 318 | 97.44 | ||
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.41 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.39 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.39 | |
| KOG3616|consensus | 1636 | 97.36 | ||
| KOG0530|consensus | 318 | 97.36 | ||
| KOG2300|consensus | 629 | 97.34 | ||
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 97.32 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.31 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 97.26 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 97.25 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 97.21 | |
| KOG2041|consensus | 1189 | 97.16 | ||
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 97.16 | |
| KOG1914|consensus | 656 | 97.1 | ||
| KOG1308|consensus | 377 | 97.08 | ||
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 97.03 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 96.99 | |
| KOG0985|consensus | 1666 | 96.97 | ||
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.97 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.96 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 96.89 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 96.89 | |
| KOG1308|consensus | 377 | 96.89 | ||
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.86 | |
| KOG4507|consensus | 886 | 96.86 | ||
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 96.83 | |
| KOG3824|consensus | 472 | 96.81 | ||
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 96.78 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 96.71 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 96.69 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.64 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 96.64 | |
| KOG3364|consensus | 149 | 96.59 | ||
| KOG2396|consensus | 568 | 96.55 | ||
| PRK10941 | 269 | hypothetical protein; Provisional | 96.46 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 96.45 | |
| KOG1464|consensus | 440 | 96.38 | ||
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 96.38 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 96.35 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 96.34 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 96.26 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 96.18 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 96.12 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 96.11 | |
| KOG2396|consensus | 568 | 96.1 | ||
| KOG1464|consensus | 440 | 96.04 | ||
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 96.03 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 96.02 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 95.95 | |
| KOG3364|consensus | 149 | 95.91 | ||
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 95.66 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 95.65 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 95.63 | |
| KOG4014|consensus | 248 | 95.58 | ||
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 95.52 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 95.41 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 95.39 | |
| KOG1538|consensus | 1081 | 95.14 | ||
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 95.11 | |
| KOG1914|consensus | 656 | 95.11 | ||
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 95.05 | |
| KOG4014|consensus | 248 | 94.97 | ||
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 94.93 | |
| KOG3824|consensus | 472 | 94.86 | ||
| KOG2041|consensus | 1189 | 94.76 | ||
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 94.74 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.71 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 94.7 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 94.67 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 94.59 | |
| KOG4814|consensus | 872 | 94.56 | ||
| KOG1839|consensus | 1236 | 94.55 | ||
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.51 | |
| KOG3807|consensus | 556 | 94.48 | ||
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 94.44 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 94.41 | |
| KOG1258|consensus | 577 | 94.3 | ||
| KOG1258|consensus | 577 | 94.24 | ||
| KOG1310|consensus | 758 | 94.18 | ||
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 93.99 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.83 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 93.81 | |
| KOG4814|consensus | 872 | 93.8 | ||
| PF12739 | 414 | TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex | 93.79 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.77 | |
| KOG0529|consensus | 421 | 93.72 | ||
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 93.69 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 93.63 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 93.58 | |
| KOG3783|consensus | 546 | 93.54 | ||
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 93.48 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 93.45 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 93.38 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 93.23 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 93.2 | |
| KOG2422|consensus | 665 | 93.03 | ||
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 93.0 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 92.99 | |
| KOG3807|consensus | 556 | 92.93 | ||
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 92.93 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 92.84 | |
| KOG1310|consensus | 758 | 92.67 | ||
| KOG0890|consensus | 2382 | 92.48 | ||
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.46 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 92.14 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 92.08 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 91.99 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 91.92 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 91.8 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.62 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 91.18 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 91.06 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 90.84 | |
| KOG2581|consensus | 493 | 90.65 | ||
| KOG4279|consensus | 1226 | 90.24 | ||
| KOG1839|consensus | 1236 | 89.82 | ||
| KOG2581|consensus | 493 | 89.33 | ||
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 89.32 | |
| KOG0687|consensus | 393 | 89.1 | ||
| KOG1463|consensus | 411 | 88.64 | ||
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 88.43 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 88.22 | |
| PF10255 | 404 | Paf67: RNA polymerase I-associated factor PAF67; I | 88.01 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 87.94 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 87.8 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 87.65 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 87.62 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 87.39 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 86.52 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 85.98 | |
| PF00244 | 236 | 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 | 85.86 | |
| PF10255 | 404 | Paf67: RNA polymerase I-associated factor PAF67; I | 85.71 | |
| KOG1463|consensus | 411 | 85.63 | ||
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 85.37 | |
| PHA02537 | 230 | M terminase endonuclease subunit; Provisional | 84.93 | |
| KOG2114|consensus | 933 | 84.87 | ||
| KOG0529|consensus | 421 | 84.83 | ||
| KOG3783|consensus | 546 | 84.06 | ||
| KOG2114|consensus | 933 | 83.52 | ||
| KOG2422|consensus | 665 | 81.66 | ||
| PF12739 | 414 | TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex | 81.01 |
| >KOG4626|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=259.39 Aligned_cols=287 Identities=16% Similarity=0.182 Sum_probs=199.4
Q ss_pred ccccccchhhhHhHHHHH-----HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchh
Q psy8160 13 IVTSVRVPKLQQFGKTLN-----IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTF 86 (324)
Q Consensus 13 ~~~~~~~~~l~~~~~~~~-----~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~ 86 (324)
..+|+.++...+++.++. .+|...|.++++.+|.+.. +|..||.++..+|+.-.|+.+|++++ +||....+
T Consensus 178 qlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAi---awsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dA 254 (966)
T KOG4626|consen 178 QLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAI---AWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDA 254 (966)
T ss_pred hcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceee---eehhcchHHhhcchHHHHHHHHHHhhcCCCcchHH
Confidence 455666666555555555 6777777777777776533 56777777777777777777777777 77777777
Q ss_pred hHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHH
Q psy8160 87 TKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQL 166 (324)
Q Consensus 87 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l 166 (324)
+..||.+|...+.|+.|+.+|.+++...|... .++-++|-+|..+|..+-|+.+|+++++.. |+. .+++.++
T Consensus 255 YiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A----~a~gNla~iYyeqG~ldlAI~~Ykral~~~--P~F--~~Ay~Nl 326 (966)
T KOG4626|consen 255 YINLGNVYKEARIFDRAVSCYLRALNLRPNHA----VAHGNLACIYYEQGLLDLAIDTYKRALELQ--PNF--PDAYNNL 326 (966)
T ss_pred HhhHHHHHHHHhcchHHHHHHHHHHhcCCcch----hhccceEEEEeccccHHHHHHHHHHHHhcC--CCc--hHHHhHH
Confidence 77777777777777777777777776666654 666677777777777777777777777776 665 3377777
Q ss_pred HHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHh
Q psy8160 167 GWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDF 246 (324)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 246 (324)
|..... .|+..+|..+|.+++.+.|..+++.++||.++.++|++++|...|.++++..|..+.+..+||.+|.
T Consensus 327 anALkd-------~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~k 399 (966)
T KOG4626|consen 327 ANALKD-------KGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYK 399 (966)
T ss_pred HHHHHh-------ccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHH
Confidence 766643 3467777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hcCCCHHHHHHHH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHH
Q psy8160 247 SNNSNREDYHQAL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQA 315 (324)
Q Consensus 247 ~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a 315 (324)
++|+ +++|+.+| +++.++|.+|..+|+.+. |+.+|.+|+..+|....+.+||+.+. ...|+..+|
T Consensus 400 qqgn-l~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~--A~q~y~rAI~~nPt~AeAhsNLasi~-kDsGni~~A 475 (966)
T KOG4626|consen 400 QQGN-LDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSA--AIQCYTRAIQINPTFAEAHSNLASIY-KDSGNIPEA 475 (966)
T ss_pred hccc-HHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHH--HHHHHHHHHhcCcHHHHHHhhHHHHh-hccCCcHHH
Confidence 7777 77777777 666777777777777777 77777777777777777777766543 345666666
Q ss_pred HHHHhh
Q psy8160 316 LNKYRD 321 (324)
Q Consensus 316 ~~~~~~ 321 (324)
+..|+.
T Consensus 476 I~sY~~ 481 (966)
T KOG4626|consen 476 IQSYRT 481 (966)
T ss_pred HHHHHH
Confidence 666654
|
|
| >KOG4626|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=254.66 Aligned_cols=268 Identities=18% Similarity=0.212 Sum_probs=250.0
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTL 109 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 109 (324)
..|+..|+++++++|+|+ ++|++||.+|...+.|+.|+.+|.+++ ..|.+..++..+|-+|..+|..+-|+.+|++
T Consensus 235 ~~aiq~y~eAvkldP~f~---dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykr 311 (966)
T KOG4626|consen 235 WLAIQHYEEAVKLDPNFL---DAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKR 311 (966)
T ss_pred HHHHHHHHHhhcCCCcch---HHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHH
Confidence 889999999999999875 479999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHH
Q psy8160 110 CLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHC 189 (324)
Q Consensus 110 ~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~ 189 (324)
++...|... +++.++|..+...|+..+|+.+|.+++... |.+ +++..++|.++.. .+..++|..+
T Consensus 312 al~~~P~F~----~Ay~NlanALkd~G~V~ea~~cYnkaL~l~--p~h--adam~NLgni~~E-------~~~~e~A~~l 376 (966)
T KOG4626|consen 312 ALELQPNFP----DAYNNLANALKDKGSVTEAVDCYNKALRLC--PNH--ADAMNNLGNIYRE-------QGKIEEATRL 376 (966)
T ss_pred HHhcCCCch----HHHhHHHHHHHhccchHHHHHHHHHHHHhC--Ccc--HHHHHHHHHHHHH-------hccchHHHHH
Confidence 999999887 899999999999999999999999999999 988 7799999999987 4489999999
Q ss_pred HHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH----------
Q psy8160 190 LQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL---------- 259 (324)
Q Consensus 190 ~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~---------- 259 (324)
|.++++..|..+.+..+||.+|.++|++++|+.+|+.++.+.|..++++.++|..|..+|+ ...|+++|
T Consensus 377 y~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~-v~~A~q~y~rAI~~nPt~ 455 (966)
T KOG4626|consen 377 YLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGD-VSAAIQCYTRAIQINPTF 455 (966)
T ss_pred HHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhh-HHHHHHHHHHHHhcCcHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred -HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhcc--CChhhHHHHHHHH
Q psy8160 260 -NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNN--SNREDYHQALNKY 319 (324)
Q Consensus 260 -~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~--~~~~~~~~a~~~~ 319 (324)
+++.+||.+|...|+..+ ||..|+.++++.|+.|.+--|+..-.. ....||++-+.+.
T Consensus 456 AeAhsNLasi~kDsGni~~--AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl 516 (966)
T KOG4626|consen 456 AEAHSNLASIYKDSGNIPE--AIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKL 516 (966)
T ss_pred HHHHhhHHHHhhccCCcHH--HHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHHH
Confidence 899999999999999999 999999999999999998877754322 4556666555443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-29 Score=229.73 Aligned_cols=273 Identities=14% Similarity=0.084 Sum_probs=207.3
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTL 109 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 109 (324)
++|+..|++++++.|+ +..+..+|.||..+|++++|+..+.+++ .+|++..++..+|.++...|++++|+..|..
T Consensus 144 ~~Ai~~y~~al~~~p~----~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~ 219 (615)
T TIGR00990 144 NKAIKLYSKAIECKPD----PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTA 219 (615)
T ss_pred HHHHHHHHHHHhcCCc----hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999985 3478999999999999999999999999 9999999999999999999999999876654
Q ss_pred HHHhcC------------------------------CC------------------------------------------
Q psy8160 110 CLIDAS------------------------------PC------------------------------------------ 117 (324)
Q Consensus 110 ~l~~~~------------------------------~~------------------------------------------ 117 (324)
++...+ ..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 299 (615)
T TIGR00990 220 SCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGL 299 (615)
T ss_pred HHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHH
Confidence 321110 00
Q ss_pred ---------------------------cccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHH
Q psy8160 118 ---------------------------TFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMY 170 (324)
Q Consensus 118 ---------------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~ 170 (324)
......++..+|.++...|++++|+..|++++..+ |.. ..++..+|.++
T Consensus 300 ~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~--P~~--~~~~~~la~~~ 375 (615)
T TIGR00990 300 KSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD--PRV--TQSYIKRASMN 375 (615)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCc--HHHHHHHHHHH
Confidence 00112346667777777888888888888888877 766 34777788777
Q ss_pred HhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCC
Q psy8160 171 HCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNS 250 (324)
Q Consensus 171 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 250 (324)
.. .+++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|++++.++|++...|..+|.++...|+
T Consensus 376 ~~-------~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~ 448 (615)
T TIGR00990 376 LE-------LGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGS 448 (615)
T ss_pred HH-------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCC
Confidence 65 44788888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhh------hccCChhhHH
Q psy8160 251 NREDYHQAL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDF------SNNSNREDYH 313 (324)
Q Consensus 251 ~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~------~~~~~~~~~~ 313 (324)
+++|+..| .++..+|.++...|++++ |+..|+++++++|++..+..+... ......+++.
T Consensus 449 -~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~--A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~ 525 (615)
T TIGR00990 449 -IASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDE--AIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFI 525 (615)
T ss_pred -HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHH--HHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHH
Confidence 88888877 677788888888888888 888888888888765443322211 1112246677
Q ss_pred HHHHHHhh
Q psy8160 314 QALNKYRD 321 (324)
Q Consensus 314 ~a~~~~~~ 321 (324)
+|+..+++
T Consensus 526 eA~~~~~k 533 (615)
T TIGR00990 526 EAENLCEK 533 (615)
T ss_pred HHHHHHHH
Confidence 77766654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=227.94 Aligned_cols=285 Identities=16% Similarity=0.117 Sum_probs=241.1
Q ss_pred ccccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-c------------
Q psy8160 15 TSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-I------------ 79 (324)
Q Consensus 15 ~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~------------ 79 (324)
++..+.+++...+.++ ++|++.+.++++++|++ ..+++.+|.+|..+|++++|+..|..++ .
T Consensus 159 ~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~---~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~ 235 (615)
T TIGR00990 159 DPVYYSNRAACHNALGDWEKVVEDTTAALELDPDY---SKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAV 235 (615)
T ss_pred chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence 5667777777666666 99999999999999874 4578889999888888888876554332 1
Q ss_pred --------------------------------------------------------------------------------
Q psy8160 80 -------------------------------------------------------------------------------- 79 (324)
Q Consensus 80 -------------------------------------------------------------------------------- 79 (324)
T Consensus 236 ~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~ 315 (615)
T TIGR00990 236 ERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAAR 315 (615)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHH
Confidence
Q ss_pred -----------CCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q psy8160 80 -----------DASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQL 148 (324)
Q Consensus 80 -----------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 148 (324)
+|....++..+|.++...|++++|+..|++++...|... ..+..+|.++...|++++|+..|+++
T Consensus 316 ~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~----~~~~~la~~~~~~g~~~eA~~~~~~a 391 (615)
T TIGR00990 316 AFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT----QSYIKRASMNLELGDPDKAEEDFDKA 391 (615)
T ss_pred HHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 123333455578888889999999999999999888765 78999999999999999999999999
Q ss_pred HhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy8160 149 LKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSV 228 (324)
Q Consensus 149 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 228 (324)
+..+ |++ +.+++.+|.+++. .|++++|+.+|+++++++|++...++.+|.++..+|++++|+..|++++
T Consensus 392 l~~~--p~~--~~~~~~lg~~~~~-------~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al 460 (615)
T TIGR00990 392 LKLN--SED--PDIYYHRAQLHFI-------KGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCK 460 (615)
T ss_pred HHhC--CCC--HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9998 887 5599999999977 5599999999999999999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH-----------H------HHHhh-HHHHHHcCCCCcchHHHHHHHhhhc
Q psy8160 229 EKSEGNADTWCSIGNKDFSNNSNREDYHQAL-----------N------KYRDL-GDFLVINNIPTSNNNRQCYNSYSTS 290 (324)
Q Consensus 229 ~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-----------~------~~~~l-g~~~~~~~~~~~~~A~~~~~~al~~ 290 (324)
...|+++.++..+|.++...|+ +++|+..| . .+... +.++...|++++ |+..|++++++
T Consensus 461 ~~~P~~~~~~~~lg~~~~~~g~-~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~e--A~~~~~kAl~l 537 (615)
T TIGR00990 461 KNFPEAPDVYNYYGELLLDQNK-FDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIE--AENLCEKALII 537 (615)
T ss_pred HhCCCChHHHHHHHHHHHHccC-HHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHH--HHHHHHHHHhc
Confidence 9999999999999999999999 99999998 1 11222 334455799999 99999999999
Q ss_pred CCChhhhhhchhhhccCChhhHHHHHHHHhh
Q psy8160 291 IASCKHINNNKDFSNNSNREDYHQALNKYRD 321 (324)
Q Consensus 291 ~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 321 (324)
+|++..+...++.+. ...|++++|+..|..
T Consensus 538 ~p~~~~a~~~la~~~-~~~g~~~eAi~~~e~ 567 (615)
T TIGR00990 538 DPECDIAVATMAQLL-LQQGDVDEALKLFER 567 (615)
T ss_pred CCCcHHHHHHHHHHH-HHccCHHHHHHHHHH
Confidence 999988888887664 457889999888865
|
|
| >KOG1126|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-28 Score=211.15 Aligned_cols=246 Identities=19% Similarity=0.166 Sum_probs=226.6
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-c------------------------------
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-I------------------------------ 79 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~------------------------------ 79 (324)
++|+..|.+.-+..++ ...+...+|..|+.+++|++|.++|+.+- .
T Consensus 336 ~~A~~~~~klp~h~~n---t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 336 REALNLFEKLPSHHYN---TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHhhHHhcCC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 8999999995555544 34688999999999999999999999886 4
Q ss_pred ----CCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCC
Q psy8160 80 ----DASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLP 155 (324)
Q Consensus 80 ----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 155 (324)
+|..+..|-.+|++|..+++++.|+++|++++..+|... -++..+|+-+....++++|..+|+.++..+ |
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~fa----YayTLlGhE~~~~ee~d~a~~~fr~Al~~~--~ 486 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFA----YAYTLLGHESIATEEFDKAMKSFRKALGVD--P 486 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccc----hhhhhcCChhhhhHHHHhHHHHHHhhhcCC--c
Confidence 677777788899999999999999999999999999776 678899999999999999999999999999 9
Q ss_pred CchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q psy8160 156 VHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNA 235 (324)
Q Consensus 156 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 235 (324)
.++. +|+++|.+|.+ +++++.|+.+|++|++++|.+....+.+|.++...|+.++|+..|++|+.++|.++
T Consensus 487 rhYn--AwYGlG~vy~K-------qek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~ 557 (638)
T KOG1126|consen 487 RHYN--AWYGLGTVYLK-------QEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP 557 (638)
T ss_pred hhhH--HHHhhhhheec-------cchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc
Confidence 9866 99999999987 55999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHhhcCCCHHHHHHHH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhh
Q psy8160 236 DTWCSIGNKDFSNNSNREDYHQAL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHI 297 (324)
Q Consensus 236 ~~~~~lg~~~~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 297 (324)
-..+..|.+++..++ +++|+..+ .+++.+|.+|.+.|+.+. |+..|.-|++++|.-.++
T Consensus 558 l~~~~~~~il~~~~~-~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~--Al~~f~~A~~ldpkg~~i 627 (638)
T KOG1126|consen 558 LCKYHRASILFSLGR-YVEALQELEELKELVPQESSVFALLGKIYKRLGNTDL--ALLHFSWALDLDPKGAQI 627 (638)
T ss_pred hhHHHHHHHHHhhcc-hHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchH--HHHhhHHHhcCCCccchh
Confidence 999999999999999 99999888 789999999999999999 999999999999975543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5e-27 Score=217.32 Aligned_cols=295 Identities=9% Similarity=-0.014 Sum_probs=233.3
Q ss_pred HHHHhhhhccccccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCC
Q psy8160 5 IQKNLVEGIVTSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDA 81 (324)
Q Consensus 5 ~~~~~~~~~~~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~ 81 (324)
++..+...+.+++....++-..+..+ ++|++.|++++.++|+. .+++..+|.++...|++++|+..|++++ .+|
T Consensus 65 ~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~---~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P 141 (656)
T PRK15174 65 LSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQ---PEDVLLVASVLLKSKQYATVADLAEQAWLAFS 141 (656)
T ss_pred hHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 45556666777777777776555444 99999999999999874 4578999999999999999999999999 999
Q ss_pred CCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhH
Q psy8160 82 SPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKAD 161 (324)
Q Consensus 82 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 161 (324)
++..++..++.++...|++++|+..+++++...|... .++..++ .+...|++++|+..+++++..+ |... ..
T Consensus 142 ~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~----~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~--~~~~-~~ 213 (656)
T PRK15174 142 GNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRG----DMIATCL-SFLNKSRLPEDHDLARALLPFF--ALER-QE 213 (656)
T ss_pred CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCH----HHHHHHH-HHHHcCCHHHHHHHHHHHHhcC--CCcc-hh
Confidence 9999999999999999999999999998888777664 4454443 3677888888888888887776 3221 11
Q ss_pred HHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHH----HHHHHHHHHccCCCCHHH
Q psy8160 162 ICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHD----AFLAYRNSVEKSEGNADT 237 (324)
Q Consensus 162 ~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~----A~~~~~~al~~~p~~~~~ 237 (324)
....++.++.. .+++++|+..++++++.+|+++.+++.+|.++...|++++ |+..|++++..+|+++.+
T Consensus 214 ~~~~l~~~l~~-------~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a 286 (656)
T PRK15174 214 SAGLAVDTLCA-------VGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRI 286 (656)
T ss_pred HHHHHHHHHHH-------CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHH
Confidence 33344555544 4488888888888888888888888888888888888875 788888888888888888
Q ss_pred HHHhHHHHhhcCCCHHHHHHHH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhcc
Q psy8160 238 WCSIGNKDFSNNSNREDYHQAL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNN 306 (324)
Q Consensus 238 ~~~lg~~~~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 306 (324)
+..+|.++...|+ +++|+..+ .++..+|.++...|++++ |+..|+++++.+|+++.....++.. .
T Consensus 287 ~~~lg~~l~~~g~-~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~e--A~~~l~~al~~~P~~~~~~~~~a~a-l 362 (656)
T PRK15174 287 VTLYADALIRTGQ-NEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTA--ASDEFVQLAREKGVTSKWNRYAAAA-L 362 (656)
T ss_pred HHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHhCccchHHHHHHHHH-H
Confidence 8888888888888 88888888 677888888888888888 8888888888888876655444332 2
Q ss_pred CChhhHHHHHHHHhh
Q psy8160 307 SNREDYHQALNKYRD 321 (324)
Q Consensus 307 ~~~~~~~~a~~~~~~ 321 (324)
...|++++|+..|+.
T Consensus 363 ~~~G~~deA~~~l~~ 377 (656)
T PRK15174 363 LQAGKTSEAESVFEH 377 (656)
T ss_pred HHCCCHHHHHHHHHH
Confidence 456778888877765
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.3e-26 Score=209.24 Aligned_cols=271 Identities=11% Similarity=-0.012 Sum_probs=236.7
Q ss_pred HHHHHhhhhccccccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cC
Q psy8160 4 VIQKNLVEGIVTSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-ID 80 (324)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~ 80 (324)
.+++.+...+.++..+..++.+....+ ++|+..|.+++.++|+ ...++..+|.++...|++++|+..+++++ .+
T Consensus 98 ~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~---~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 98 VVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSG---NSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 345666677778888878887666656 9999999999999987 45689999999999999999999999998 89
Q ss_pred CCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhh
Q psy8160 81 ASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKA 160 (324)
Q Consensus 81 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 160 (324)
|.+..++..++ .+...|++++|+..+++++...|... ......++.++...|++++|+..|++++..+ |++ +
T Consensus 175 P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~---~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~--p~~--~ 246 (656)
T PRK15174 175 PPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALER---QESAGLAVDTLCAVGKYQEAIQTGESALARG--LDG--A 246 (656)
T ss_pred CCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcc---hhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCC--H
Confidence 99888776654 47888999999999999988765432 1344566888999999999999999999998 887 5
Q ss_pred HHHHHHHHHHHhhhhhcccchhHHH----HHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH
Q psy8160 161 DICRQLGWMYHCIDTLGEKSHRETL----AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNAD 236 (324)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~~~~~~~~----A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 236 (324)
.++..+|.++.. .|++++ |+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|+++.
T Consensus 247 ~~~~~Lg~~l~~-------~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~ 319 (656)
T PRK15174 247 ALRRSLGLAYYQ-------SGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPY 319 (656)
T ss_pred HHHHHHHHHHHH-------cCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 599999999977 336664 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHhhcCCCHHHHHHHH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChh
Q psy8160 237 TWCSIGNKDFSNNSNREDYHQAL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCK 295 (324)
Q Consensus 237 ~~~~lg~~~~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (324)
++..+|.++...|+ +++|+..| ..+..+|.++...|++++ |+..|+++++.+|++.
T Consensus 320 a~~~La~~l~~~G~-~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~de--A~~~l~~al~~~P~~~ 386 (656)
T PRK15174 320 VRAMYARALRQVGQ-YTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSE--AESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHHHCCC-HHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHH--HHHHHHHHHHhChhhc
Confidence 99999999999999 99999999 345567999999999999 9999999999999975
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.7e-26 Score=222.77 Aligned_cols=276 Identities=16% Similarity=0.131 Sum_probs=231.1
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchh--------------hHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTF--------------TKLEGLMFK 95 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~--------------~~~la~~~~ 95 (324)
++|+..|+++++.+|+ +.++++.+|.++..+|++++|+.+|++++ .+|++... ...+|.++.
T Consensus 286 ~~A~~~l~~aL~~~P~---~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~ 362 (1157)
T PRK11447 286 GKAIPELQQAVRANPK---DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAAL 362 (1157)
T ss_pred HHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHH
Confidence 9999999999999986 45689999999999999999999999999 88877532 123578888
Q ss_pred hcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhh-
Q psy8160 96 VNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCID- 174 (324)
Q Consensus 96 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~- 174 (324)
..|++++|+..|++++...|... .++..+|.++...|++++|+..|++++..+ |++. .++..++.++....
T Consensus 363 ~~g~~~eA~~~~~~Al~~~P~~~----~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~--~a~~~L~~l~~~~~~ 434 (1157)
T PRK11447 363 KANNLAQAERLYQQARQVDNTDS----YAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNT--NAVRGLANLYRQQSP 434 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCH--HHHHHHHHHHHhcCH
Confidence 99999999999999999988765 789999999999999999999999999998 8773 36666666653100
Q ss_pred -------------------------------hhc---ccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHH
Q psy8160 175 -------------------------------TLG---EKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDA 220 (324)
Q Consensus 175 -------------------------------~~~---~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A 220 (324)
..+ ...+++++|+..|+++++.+|+++.+++.+|.++...|++++|
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 000 0246899999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH-----------------------------------------
Q psy8160 221 FLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL----------------------------------------- 259 (324)
Q Consensus 221 ~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~----------------------------------------- 259 (324)
+..+++++..+|+++..++.+|..+...++ +++|+..+
T Consensus 515 ~~~l~~al~~~P~~~~~~~a~al~l~~~~~-~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~ 593 (1157)
T PRK11447 515 DALMRRLAQQKPNDPEQVYAYGLYLSGSDR-DRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE 593 (1157)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999888777766665555 55554443
Q ss_pred ----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHhh
Q psy8160 260 ----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYRD 321 (324)
Q Consensus 260 ----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 321 (324)
.++..+|.++...|++++ |+..|+++++.+|+++.++.++..+. ...+++++|+..++.
T Consensus 594 ~~l~~~p~~~~~~~~La~~~~~~g~~~~--A~~~y~~al~~~P~~~~a~~~la~~~-~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 594 ALLRQQPPSTRIDLTLADWAQQRGDYAA--ARAAYQRVLTREPGNADARLGLIEVD-IAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHHhCCCCchHHHHHHHHHHHcCCHHH--HHHHHHHHHHhCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHH
Confidence 356788999999999999 99999999999999998888887654 345888888887764
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.96 E-value=6e-26 Score=219.72 Aligned_cols=286 Identities=16% Similarity=0.096 Sum_probs=204.7
Q ss_pred ccccccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHH
Q psy8160 13 IVTSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKL 89 (324)
Q Consensus 13 ~~~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~ 89 (324)
+.++..+..++.+....+ ++|++.|+++++..|+. ..++..+|.++...|++++|+..|++++ .+|++...+..
T Consensus 598 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 674 (899)
T TIGR02917 598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDS---ALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIG 674 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 333444444444333333 55555555555555442 2345555555555666666666666655 55555555555
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHH
Q psy8160 90 EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWM 169 (324)
Q Consensus 90 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~ 169 (324)
++.++...|++++|+..++.+....|... .++..+|.++...|++++|+..|++++... |+. .++..++.+
T Consensus 675 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~---~~~~~l~~~ 745 (899)
T TIGR02917 675 LAQLLLAAKRTESAKKIAKSLQKQHPKAA----LGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSS---QNAIKLHRA 745 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcCCh----HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCc---hHHHHHHHH
Confidence 56666666666666665555555544443 566777888888888888888888888777 554 366677777
Q ss_pred HHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcC
Q psy8160 170 YHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNN 249 (324)
Q Consensus 170 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 249 (324)
+.. .|++++|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|
T Consensus 746 ~~~-------~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 818 (899)
T TIGR02917 746 LLA-------SGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELK 818 (899)
T ss_pred HHH-------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 755 4488888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHH
Q psy8160 250 SNREDYHQAL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNK 318 (324)
Q Consensus 250 ~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~ 318 (324)
+ .+ |+..+ ..+..+|.++...|++++ |+..|+++++.+|+++.+..++..+. ...|++++|+..
T Consensus 819 ~-~~-A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--A~~~~~~a~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~ 893 (899)
T TIGR02917 819 D-PR-ALEYAEKALKLAPNIPAILDTLGWLLVEKGEADR--ALPLLRKAVNIAPEAAAIRYHLALAL-LATGRKAEARKE 893 (899)
T ss_pred c-HH-HHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHH--HHHHHHHHHhhCCCChHHHHHHHHHH-HHcCCHHHHHHH
Confidence 7 44 87777 567788999999999999 99999999999999888888887653 456888998888
Q ss_pred Hhhc
Q psy8160 319 YRDL 322 (324)
Q Consensus 319 ~~~~ 322 (324)
++++
T Consensus 894 ~~~~ 897 (899)
T TIGR02917 894 LDKL 897 (899)
T ss_pred HHHH
Confidence 8765
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.2e-26 Score=221.81 Aligned_cols=303 Identities=17% Similarity=0.122 Sum_probs=217.5
Q ss_pred HHHHhhhhccccccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccch-----------HHHHHHHHHHHHhccHHHHH
Q psy8160 5 IQKNLVEGIVTSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRAN-----------EVHLRLGLMFKVNNEYDSAL 71 (324)
Q Consensus 5 ~~~~~~~~~~~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~-----------~~~~~lg~~~~~~~~~~~A~ 71 (324)
+++.+...+.+++....||.+.+..+ ++|+..|+++++++|+.+... .....+|.++...|++++|+
T Consensus 292 l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~ 371 (1157)
T PRK11447 292 LQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAE 371 (1157)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHH
Confidence 45556666677777777777666655 999999999999999754311 12345688889999999999
Q ss_pred HHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccH-----------------------------
Q psy8160 72 KHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTK----------------------------- 121 (324)
Q Consensus 72 ~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~----------------------------- 121 (324)
..|++++ .+|.+..++..+|.++...|++++|++.|++++...|.+....
T Consensus 372 ~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~ 451 (1157)
T PRK11447 372 RLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRS 451 (1157)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHH
Confidence 9999999 9999999999999999999999999999999998877754210
Q ss_pred ---------HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHH
Q psy8160 122 ---------LEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQK 192 (324)
Q Consensus 122 ---------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~ 192 (324)
...+..+|.++...|++++|+..|++++..+ |++ ..+++.+|.++.. .|++++|+..+++
T Consensus 452 ~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~--~~~~~~LA~~~~~-------~G~~~~A~~~l~~ 520 (1157)
T PRK11447 452 IDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGS--VWLTYRLAQDLRQ-------AGQRSQADALMRR 520 (1157)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCC--HHHHHHHHHHHHH-------cCCHHHHHHHHHH
Confidence 0112234566667899999999999999999 887 4488899998866 4588888888888
Q ss_pred HhhhCCccHHHHH-------------------------------------------------------------------
Q psy8160 193 SIEADPKSGQSLY------------------------------------------------------------------- 205 (324)
Q Consensus 193 al~~~~~~~~~~~------------------------------------------------------------------- 205 (324)
+++.+|.++..++
T Consensus 521 al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p 600 (1157)
T PRK11447 521 LAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQP 600 (1157)
T ss_pred HHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 8887777665443
Q ss_pred -------HHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH-----------HHHHhhHH
Q psy8160 206 -------LLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL-----------NKYRDLGD 267 (324)
Q Consensus 206 -------~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-----------~~~~~lg~ 267 (324)
.+|.++...|++++|+..|++++..+|++++++..+|.++...|+ +++|++.| .++..+|.
T Consensus 601 ~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~-~~eA~~~l~~ll~~~p~~~~~~~~la~ 679 (1157)
T PRK11447 601 PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGD-LAAARAQLAKLPATANDSLNTQRRVAL 679 (1157)
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 455555666666667777777777777777777777777777777 77776666 45556666
Q ss_pred HHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchh-----hhccCChhhHHHHHHHHhh
Q psy8160 268 FLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKD-----FSNNSNREDYHQALNKYRD 321 (324)
Q Consensus 268 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~-----~~~~~~~~~~~~a~~~~~~ 321 (324)
++...|++++ |++.|++++...|+++....... .......|++.+|+..|++
T Consensus 680 ~~~~~g~~~e--A~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~ 736 (1157)
T PRK11447 680 AWAALGDTAA--AQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKD 736 (1157)
T ss_pred HHHhCCCHHH--HHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6766777777 77777777666655443211110 1112555677777766664
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-25 Score=216.62 Aligned_cols=290 Identities=14% Similarity=0.129 Sum_probs=196.7
Q ss_pred hhhccccccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchh
Q psy8160 10 VEGIVTSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTF 86 (324)
Q Consensus 10 ~~~~~~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~ 86 (324)
...+.++..+..++.+....+ ++|++.|.++++.+|+. ..+++.+|.++...|++++|++.|++++ .+|.+...
T Consensus 459 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 535 (899)
T TIGR02917 459 KKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDF---FPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRA 535 (899)
T ss_pred HhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHH
Confidence 334455666666666555445 88999999999888763 4477888888888888888888888888 88888888
Q ss_pred hHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHH
Q psy8160 87 TKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQL 166 (324)
Q Consensus 87 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l 166 (324)
+..++.++...|++++|+..+++++...|... ..+..++.++...|++++|+..+++++... |.+ ..++..+
T Consensus 536 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~--~~~~~~l 607 (899)
T TIGR02917 536 ILALAGLYLRTGNEEEAVAWLEKAAELNPQEI----EPALALAQYYLGKGQLKKALAILNEAADAA--PDS--PEAWLML 607 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCccch----hHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCC--HHHHHHH
Confidence 88888888888888888888888877766554 566677777777777777777777777666 655 3377777
Q ss_pred HHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHh
Q psy8160 167 GWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDF 246 (324)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 246 (324)
|.++.. .+++++|+..|+++++..|.++.++..+|.++...|++++|+..|++++..+|+++.+|..++.++.
T Consensus 608 ~~~~~~-------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 680 (899)
T TIGR02917 608 GRAQLA-------AGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLL 680 (899)
T ss_pred HHHHHH-------cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 777755 3477777777777777777777777777777777777777777777777777776555555555555
Q ss_pred hcCCCHHHHHHHH--------------------------------------------HHHHhhHHHHHHcCCCCcchHHH
Q psy8160 247 SNNSNREDYHQAL--------------------------------------------NKYRDLGDFLVINNIPTSNNNRQ 282 (324)
Q Consensus 247 ~~~~~~~~A~~~~--------------------------------------------~~~~~lg~~~~~~~~~~~~~A~~ 282 (324)
..|+ +++|+..+ .++..++.++...|++++ |+.
T Consensus 681 ~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--A~~ 757 (899)
T TIGR02917 681 AAKR-TESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAE--AVK 757 (899)
T ss_pred HcCC-HHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHH--HHH
Confidence 5555 55554444 233444555555555555 555
Q ss_pred HHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHhh
Q psy8160 283 CYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYRD 321 (324)
Q Consensus 283 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 321 (324)
.++++++.+|+++.+...++.+. ...|++.+|+..|+.
T Consensus 758 ~~~~~l~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~ 795 (899)
T TIGR02917 758 TLEAWLKTHPNDAVLRTALAELY-LAQKDYDKAIKHYRT 795 (899)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHH-HHCcCHHHHHHHHHH
Confidence 55555555555555554444332 234555666555543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7e-25 Score=193.13 Aligned_cols=272 Identities=19% Similarity=0.158 Sum_probs=228.4
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCC-----chhhHHHHHHHHhcccHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASP-----CTFTKLEGLMFKVNNEYDSALK 105 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~la~~~~~~~~~~~A~~ 105 (324)
++|+..|.++++.+|+ +.++++.+|.++...|++++|+..+++++..|.. ...+..+|.++...|++++|+.
T Consensus 52 ~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~ 128 (389)
T PRK11788 52 DKAIDLFIEMLKVDPE---TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEE 128 (389)
T ss_pred HHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 8999999999999986 4568999999999999999999999998843332 2456678999999999999999
Q ss_pred HHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchh---hHHHHHHHHHHHhhhhhcccchh
Q psy8160 106 HLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK---ADICRQLGWMYHCIDTLGEKSHR 182 (324)
Q Consensus 106 ~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~ 182 (324)
.|++++...|... .++..++.++...|++++|++.+++++... |.... ...+..+|.++.. .++
T Consensus 129 ~~~~~l~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~-------~~~ 195 (389)
T PRK11788 129 LFLQLVDEGDFAE----GALQQLLEIYQQEKDWQKAIDVAERLEKLG--GDSLRVEIAHFYCELAQQALA-------RGD 195 (389)
T ss_pred HHHHHHcCCcchH----HHHHHHHHHHHHhchHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHh-------CCC
Confidence 9999997755543 788999999999999999999999999877 43321 3345667777755 459
Q ss_pred HHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-HHHHHHhHHHHhhcCCCHHHHHHHH--
Q psy8160 183 ETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN-ADTWCSIGNKDFSNNSNREDYHQAL-- 259 (324)
Q Consensus 183 ~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~~~~~~~A~~~~-- 259 (324)
+++|+..++++++.+|.+..+++.+|.++...|++++|+..+++++..+|.+ +.++..++.+|...|+ +++|+..+
T Consensus 196 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~-~~~A~~~l~~ 274 (389)
T PRK11788 196 LDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD-EAEGLEFLRR 274 (389)
T ss_pred HHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC-HHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999876 4678899999999999 99999988
Q ss_pred --------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhccC-ChhhHHHHHHHHhh
Q psy8160 260 --------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNS-NREDYHQALNKYRD 321 (324)
Q Consensus 260 --------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~~a~~~~~~ 321 (324)
..+..+|.++...|++++ |+..++++++..|+++.+...+...... ..|+..+++..+++
T Consensus 275 ~~~~~p~~~~~~~la~~~~~~g~~~~--A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~ 343 (389)
T PRK11788 275 ALEEYPGADLLLALAQLLEEQEGPEA--AQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRD 343 (389)
T ss_pred HHHhCCCchHHHHHHHHHHHhCCHHH--HHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHH
Confidence 456889999999999999 9999999999999998776555443211 13455566655543
|
|
| >KOG1155|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-24 Score=179.87 Aligned_cols=239 Identities=15% Similarity=0.148 Sum_probs=204.7
Q ss_pred HHHHHHHHHHhcc-CCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYV-DPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLT 108 (324)
Q Consensus 31 ~~A~~~~~~~l~~-~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 108 (324)
++++.-+...... .|. ..-+-...|.+.+.+.|+++|+..|+.++ .||-...-.....+++...++-.+---.-+
T Consensus 244 ~e~~~k~e~l~~~gf~~---~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~ 320 (559)
T KOG1155|consen 244 EEALQKKERLSSVGFPN---SMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQ 320 (559)
T ss_pred HHHHHHHHHHHhccCCc---cHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHH
Confidence 7777777777665 443 44466788899999999999999999999 999888888878887777665433333333
Q ss_pred HHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHH
Q psy8160 109 LCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIH 188 (324)
Q Consensus 109 ~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~ 188 (324)
.+...+.-.+ +...-+|..|...++.++|+.+|+++++++ |+... +|..+|.=|.. +.+...|+.
T Consensus 321 ~v~~idKyR~----ETCCiIaNYYSlr~eHEKAv~YFkRALkLN--p~~~~--aWTLmGHEyvE-------mKNt~AAi~ 385 (559)
T KOG1155|consen 321 NVSNIDKYRP----ETCCIIANYYSLRSEHEKAVMYFKRALKLN--PKYLS--AWTLMGHEYVE-------MKNTHAAIE 385 (559)
T ss_pred HHHHhccCCc----cceeeehhHHHHHHhHHHHHHHHHHHHhcC--cchhH--HHHHhhHHHHH-------hcccHHHHH
Confidence 3444433333 667888999999999999999999999999 88844 99999999977 348889999
Q ss_pred HHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH---------
Q psy8160 189 CLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL--------- 259 (324)
Q Consensus 189 ~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~--------- 259 (324)
.|++|++++|.+..+|+.||++|.-++.+.=|+-+|++|..+.|.++..|..||.||.+.++ .++|+++|
T Consensus 386 sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~-~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 386 SYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNR-LEEAIKCYKRAILLGDT 464 (559)
T ss_pred HHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhcc-HHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred --HHHHhhHHHHHHcCCCCcchHHHHHHHhhhc
Q psy8160 260 --NKYRDLGDFLVINNIPTSNNNRQCYNSYSTS 290 (324)
Q Consensus 260 --~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~ 290 (324)
.++..||.+|.+.++.++ |..+|++.++.
T Consensus 465 e~~~l~~LakLye~l~d~~e--Aa~~yek~v~~ 495 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNE--AAQYYEKYVEV 495 (559)
T ss_pred chHHHHHHHHHHHHHHhHHH--HHHHHHHHHHH
Confidence 789999999999999999 99999999984
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=185.52 Aligned_cols=253 Identities=14% Similarity=0.072 Sum_probs=219.0
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Q psy8160 53 VHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHL 131 (324)
Q Consensus 53 ~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~ 131 (324)
..+.+|..+...|++++|+..|++++ .+|++..++..+|.++...|++++|+..+++++...+........++..+|.+
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~ 116 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQD 116 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 56778999999999999999999999 99999999999999999999999999999999875332222334678899999
Q ss_pred HHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH-----HHHHH
Q psy8160 132 HEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG-----QSLYL 206 (324)
Q Consensus 132 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~~ 206 (324)
+...|++++|+..|++++... |.. ..++..++.++.. .+++++|+..++++++..|.+. ..+..
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~~--~~~--~~~~~~la~~~~~-------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (389)
T PRK11788 117 YLKAGLLDRAEELFLQLVDEG--DFA--EGALQQLLEIYQQ-------EKDWQKAIDVAERLEKLGGDSLRVEIAHFYCE 185 (389)
T ss_pred HHHCCCHHHHHHHHHHHHcCC--cch--HHHHHHHHHHHHH-------hchHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 999999999999999999877 665 4488889988866 4599999999999999887653 35678
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH------------HHHHhhHHHHHHcCC
Q psy8160 207 LGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL------------NKYRDLGDFLVINNI 274 (324)
Q Consensus 207 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~------------~~~~~lg~~~~~~~~ 274 (324)
+|.++...|++++|+..|+++++.+|++..++..+|.++...|+ +++|++.| .++..++.+|...|+
T Consensus 186 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 264 (389)
T PRK11788 186 LAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGD-YAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD 264 (389)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999 99999998 346788999999999
Q ss_pred CCcchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHhh
Q psy8160 275 PTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYRD 321 (324)
Q Consensus 275 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 321 (324)
+++ |+..++++++..|+.+.. ..+..+ ....+++++|+..+++
T Consensus 265 ~~~--A~~~l~~~~~~~p~~~~~-~~la~~-~~~~g~~~~A~~~l~~ 307 (389)
T PRK11788 265 EAE--GLEFLRRALEEYPGADLL-LALAQL-LEEQEGPEAAQALLRE 307 (389)
T ss_pred HHH--HHHHHHHHHHhCCCchHH-HHHHHH-HHHhCCHHHHHHHHHH
Confidence 999 999999999999987654 444433 3456888899888765
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-23 Score=198.61 Aligned_cols=267 Identities=12% Similarity=0.025 Sum_probs=223.0
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTL 109 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 109 (324)
..+...+.+++...|.. ....+++.+|.|+.. +++++|+..+.+++ ..|++. ....+|.++...|++++|+..|++
T Consensus 458 ~~~~~~~~~al~~~p~~-~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rk 534 (987)
T PRK09782 458 ADNCPAIVRLLGDMSPS-YDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQK 534 (987)
T ss_pred hhhHHHHHHhcccCCCC-CCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44556666666655531 156789999999987 89999999999999 888753 455678888899999999999999
Q ss_pred HHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHH
Q psy8160 110 CLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHC 189 (324)
Q Consensus 110 ~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~ 189 (324)
++...|.. ..++.+|.++...|++++|+.+|++++..+ |.... ....++..... .|++++|+..
T Consensus 535 a~~~~p~~-----~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~--l~~~La~~l~~-------~Gr~~eAl~~ 598 (987)
T PRK09782 535 ISLHDMSN-----EDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNA--LYWWLHAQRYI-------PGQPELALND 598 (987)
T ss_pred HhccCCCc-----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHH--HHHHHHHHHHh-------CCCHHHHHHH
Confidence 87654432 457888999999999999999999999988 76632 44444333322 3599999999
Q ss_pred HHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH----------
Q psy8160 190 LQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL---------- 259 (324)
Q Consensus 190 ~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~---------- 259 (324)
++++++.+|+ +.++..+|.++...|++++|+..|++++.++|+++.++.++|.++...|+ +++|+..|
T Consensus 599 ~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~-~eeAi~~l~~AL~l~P~~ 676 (987)
T PRK09782 599 LTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGD-IAQSREMLERAHKGLPDD 676 (987)
T ss_pred HHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCC
Confidence 9999999996 99999999999999999999999999999999999999999999999999 99999999
Q ss_pred -HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHhh
Q psy8160 260 -NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYRD 321 (324)
Q Consensus 260 -~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 321 (324)
.++.++|.++...|++++ |+.+|+++++++|++..+....+.+. ..+.+|..+.+.+..
T Consensus 677 ~~a~~nLA~al~~lGd~~e--A~~~l~~Al~l~P~~a~i~~~~g~~~-~~~~~~~~a~~~~~r 736 (987)
T PRK09782 677 PALIRQLAYVNQRLDDMAA--TQHYARLVIDDIDNQALITPLTPEQN-QQRFNFRRLHEEVGR 736 (987)
T ss_pred HHHHHHHHHHHHHCCCHHH--HHHHHHHHHhcCCCCchhhhhhhHHH-HHHHHHHHHHHHHHH
Confidence 889999999999999999 99999999999999998888776654 345668888877653
|
|
| >KOG1126|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-24 Score=187.23 Aligned_cols=226 Identities=17% Similarity=0.200 Sum_probs=206.6
Q ss_pred cchhhhHhHHHHH--HHHHHHHHHHhccCCCccc-------------------------------chHHHHHHHHHHHHh
Q psy8160 18 RVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLR-------------------------------ANEVHLRLGLMFKVN 64 (324)
Q Consensus 18 ~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~-------------------------------~~~~~~~lg~~~~~~ 64 (324)
+...+|..++.+. ++|..+|+.+-++.|-.-+ .++.|..+|.||..+
T Consensus 355 vl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQ 434 (638)
T KOG1126|consen 355 VLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQ 434 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhh
Confidence 4455777666666 8999999998888774322 345688899999999
Q ss_pred ccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHH
Q psy8160 65 NEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKD 143 (324)
Q Consensus 65 ~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 143 (324)
++.+.|+++|++|+ +||.+..++.++|+=+..+.+++.|..+|++++..+|..- .+|+.+|.+|..+++++.|.-
T Consensus 435 kdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY----nAwYGlG~vy~Kqek~e~Ae~ 510 (638)
T KOG1126|consen 435 KDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHY----NAWYGLGTVYLKQEKLEFAEF 510 (638)
T ss_pred hHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhh----HHHHhhhhheeccchhhHHHH
Confidence 99999999999999 9999999999999999999999999999999999888876 899999999999999999999
Q ss_pred HHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHH
Q psy8160 144 SYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLA 223 (324)
Q Consensus 144 ~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~ 223 (324)
.|++|+.++ |.+.. +...+|.++.+ .++.++|+.++++|+.++|.++-..+..|.+++..+++++|+..
T Consensus 511 ~fqkA~~IN--P~nsv--i~~~~g~~~~~-------~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~ 579 (638)
T KOG1126|consen 511 HFQKAVEIN--PSNSV--ILCHIGRIQHQ-------LKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQE 579 (638)
T ss_pred HHHhhhcCC--ccchh--HHhhhhHHHHH-------hhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHH
Confidence 999999999 88844 88899999977 55999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 224 YRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 224 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
+++..++-|++..+++.+|.+|.+.|+ .+.|+..|
T Consensus 580 LEeLk~~vP~es~v~~llgki~k~~~~-~~~Al~~f 614 (638)
T KOG1126|consen 580 LEELKELVPQESSVFALLGKIYKRLGN-TDLALLHF 614 (638)
T ss_pred HHHHHHhCcchHHHHHHHHHHHHHHcc-chHHHHhh
Confidence 999999999999999999999999999 99998887
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.4e-23 Score=193.55 Aligned_cols=262 Identities=10% Similarity=-0.030 Sum_probs=226.7
Q ss_pred ccccchhhhHhHHHHH-HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHH
Q psy8160 15 TSVRVPKLQQFGKTLN-IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGL 92 (324)
Q Consensus 15 ~~~~~~~l~~~~~~~~-~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~ 92 (324)
++..+..+|.+..... .+|+..|.+++...|+. ..+..+|..+...|++++|+.+|++++ ..|. ...+..+|.
T Consensus 476 ~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~Pd~----~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRDTLPGVALYAWLQAEQRQPDA----WQHRAVAYQAYQVEDYATALAAWQKISLHDMS-NEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHhCCcHHHHHHHHHHHHhCCch----HHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHH
Confidence 4555566666544422 78999999999999863 246777888889999999999999988 5444 455678899
Q ss_pred HHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHh
Q psy8160 93 MFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHC 172 (324)
Q Consensus 93 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~ 172 (324)
++...|++++|+.++++++...|... .....++......|++++|+..|++++..+ |+ +.++..+|.++..
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~P~~~----~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~---~~a~~~LA~~l~~ 621 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRGLGDN----ALYWWLHAQRYIPGQPELALNDLTRSLNIA--PS---ANAYVARATIYRQ 621 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCccH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CC---HHHHHHHHHHHHH
Confidence 99999999999999999998876654 555566666667799999999999999999 85 4589999999977
Q ss_pred hhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCH
Q psy8160 173 IDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNR 252 (324)
Q Consensus 173 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~ 252 (324)
.|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|+++.++.++|.++...|+ +
T Consensus 622 -------lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd-~ 693 (987)
T PRK09782 622 -------RHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDD-M 693 (987)
T ss_pred -------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-H
Confidence 55999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhch
Q psy8160 253 EDYHQAL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNK 301 (324)
Q Consensus 253 ~~A~~~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 301 (324)
++|+.+| .+....|.+.....++.. |.+.|.++...+|... +....
T Consensus 694 ~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~--a~~~~~r~~~~~~~~~-a~~~~ 750 (987)
T PRK09782 694 AATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRR--LHEEVGRRWTFSFDSS-IGLRS 750 (987)
T ss_pred HHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHH--HHHHHHHHhhcCccch-hcccc
Confidence 9999999 778889999999999999 9999999999999876 44333
|
|
| >KOG1155|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.1e-22 Score=165.33 Aligned_cols=248 Identities=14% Similarity=0.170 Sum_probs=208.3
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHH-Hh-cCCCCchhhHHHHHHHHhcccHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTL-CL-IDASPCTFTKLEGLMFKVNNEYDSALKHLT 108 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~-al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 108 (324)
++|++.|+.+.+.+|-.-.+-+.+.+ ..|. .++ ...+.++-. +. +|.-.+...-..|+.|...++.+.|+.+|+
T Consensus 279 D~a~s~Feei~knDPYRl~dmdlySN--~LYv-~~~-~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFk 354 (559)
T KOG1155|consen 279 DQAESVFEEIRKNDPYRLDDMDLYSN--VLYV-KND-KSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFK 354 (559)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHhH--HHHH-Hhh-hHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHH
Confidence 99999999999999854333333333 2333 332 223333333 33 676666666778999999999999999999
Q ss_pred HHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHH
Q psy8160 109 LCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIH 188 (324)
Q Consensus 109 ~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~ 188 (324)
++++.+|... .+|..+|+-|..+++...|++.|++|++++ |.+.. +|+++|..|-- ++.+.=|+-
T Consensus 355 RALkLNp~~~----~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~--p~DyR--AWYGLGQaYei-------m~Mh~YaLy 419 (559)
T KOG1155|consen 355 RALKLNPKYL----SAWTLMGHEYVEMKNTHAAIESYRRAVDIN--PRDYR--AWYGLGQAYEI-------MKMHFYALY 419 (559)
T ss_pred HHHhcCcchh----HHHHHhhHHHHHhcccHHHHHHHHHHHhcC--chhHH--HHhhhhHHHHH-------hcchHHHHH
Confidence 9999999887 899999999999999999999999999999 98866 99999999955 337778999
Q ss_pred HHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH---------
Q psy8160 189 CLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL--------- 259 (324)
Q Consensus 189 ~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~--------- 259 (324)
+|++|+...|+++..|..||.||...++.++|+++|.+|+.....+..++..||.+|.+.++ .++|..+|
T Consensus 420 YfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d-~~eAa~~yek~v~~~~~ 498 (559)
T KOG1155|consen 420 YFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKD-LNEAAQYYEKYVEVSEL 498 (559)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999 99999998
Q ss_pred ---------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhc
Q psy8160 260 ---------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNN 300 (324)
Q Consensus 260 ---------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 300 (324)
.+-.-|+.-+.+.+++++ |-.+...++..+|.....+.-
T Consensus 499 eg~~~~~t~ka~~fLA~~f~k~~~~~~--As~Ya~~~~~~~~e~eeak~L 546 (559)
T KOG1155|consen 499 EGEIDDETIKARLFLAEYFKKMKDFDE--ASYYATLVLKGETECEEAKAL 546 (559)
T ss_pred hcccchHHHHHHHHHHHHHHhhcchHH--HHHHHHHHhcCCchHHHHHHH
Confidence 233448888889999999 999999999887765555443
|
|
| >KOG0547|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.3e-22 Score=167.25 Aligned_cols=274 Identities=14% Similarity=0.147 Sum_probs=221.3
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTL 109 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 109 (324)
++|+.+|.+++++.|+- +-.|.+++-||...|+|++-++...+++ ++|+...+....+..+...|++++|+....-
T Consensus 132 ~eAIkyY~~AI~l~p~e---piFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv 208 (606)
T KOG0547|consen 132 DEAIKYYTQAIELCPDE---PIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTV 208 (606)
T ss_pred HHHHHHHHHHHhcCCCC---chhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhH
Confidence 99999999999999973 3367889999999999999999999999 9999999999988888888888888654332
Q ss_pred H------------------HH-------------hcCCCcc---------------------------------------
Q psy8160 110 C------------------LI-------------DASPCTF--------------------------------------- 119 (324)
Q Consensus 110 ~------------------l~-------------~~~~~~~--------------------------------------- 119 (324)
. |. ..++..+
T Consensus 209 ~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~ 288 (606)
T KOG0547|consen 209 LCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALE 288 (606)
T ss_pred HHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHH
Confidence 1 10 0000000
Q ss_pred --------------------------cH---------HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHH
Q psy8160 120 --------------------------TK---------LEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICR 164 (324)
Q Consensus 120 --------------------------~~---------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 164 (324)
.+ +.++...|..++..|++..|...|+.+|.++ |.... .+.
T Consensus 289 ~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~--~~~~~--lyI 364 (606)
T KOG0547|consen 289 KGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD--PAFNS--LYI 364 (606)
T ss_pred hhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC--cccch--HHH
Confidence 00 1145555777778889999999999999998 55433 688
Q ss_pred HHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHH
Q psy8160 165 QLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNK 244 (324)
Q Consensus 165 ~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 244 (324)
.++.+|.. ..+.++....|.++..++|.++++|+..|++++-.+++++|+.-|++++.++|++.-++..++.+
T Consensus 365 ~~a~~y~d-------~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a 437 (606)
T KOG0547|consen 365 KRAAAYAD-------ENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCA 437 (606)
T ss_pred HHHHHHhh-------hhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHH
Confidence 88888866 34788899999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCHHHHHHHH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCC------hhhhhhchhhhccC
Q psy8160 245 DFSNNSNREDYHQAL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIAS------CKHINNNKDFSNNS 307 (324)
Q Consensus 245 ~~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~ 307 (324)
.+++++ ++++...| +++...|.++..++++++ |++.|.+|+++.|. ++.-.-+.+.+-..
T Consensus 438 ~Yr~~k-~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~--A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q 514 (606)
T KOG0547|consen 438 LYRQHK-IAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDK--AVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ 514 (606)
T ss_pred HHHHHH-HHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHH--HHHHHHHHHhhccccccccccchhhhhhhHhhhc
Confidence 999999 99988888 899999999999999999 99999999999998 33222222222234
Q ss_pred ChhhHHHHHHHHhh
Q psy8160 308 NREDYHQALNKYRD 321 (324)
Q Consensus 308 ~~~~~~~a~~~~~~ 321 (324)
.++++.+|++-.++
T Consensus 515 wk~d~~~a~~Ll~K 528 (606)
T KOG0547|consen 515 WKEDINQAENLLRK 528 (606)
T ss_pred hhhhHHHHHHHHHH
Confidence 66777777765543
|
|
| >KOG2002|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-21 Score=174.13 Aligned_cols=286 Identities=15% Similarity=0.160 Sum_probs=194.6
Q ss_pred ccchhhhHhHHHHH----HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHH--
Q psy8160 17 VRVPKLQQFGKTLN----IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKL-- 89 (324)
Q Consensus 17 ~~~~~l~~~~~~~~----~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~-- 89 (324)
.+...+|+..+.++ ..|+.+|.+++.++|..+ ++....+|.|+..+++.+.|+..|.+++ +||.++.+...
T Consensus 163 Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~--aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~ 240 (1018)
T KOG2002|consen 163 NILALLGKARIAYNKKDYRGALKYYKKALRINPACK--ADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALG 240 (1018)
T ss_pred chHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccC--CCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHH
Confidence 34556778777777 888888888888888754 3467888888888888888888888888 87776665554
Q ss_pred -----------------------------------HHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Q psy8160 90 -----------------------------------EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEV 134 (324)
Q Consensus 90 -----------------------------------la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~ 134 (324)
++..|...|+|..+......++... .+....++.+|++|.+|..
T Consensus 241 ~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t-~~~~~~aes~Y~~gRs~Ha 319 (1018)
T KOG2002|consen 241 EVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNT-ENKSIKAESFYQLGRSYHA 319 (1018)
T ss_pred HHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHh
Confidence 4555555566666666666655433 2233445667777777777
Q ss_pred hhcHHHHHHHHHHHHhcCCCCCc-hhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHH
Q psy8160 135 QRKYKTAKDSYEQLLKEDDLPVH-LKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAA 213 (324)
Q Consensus 135 ~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 213 (324)
+|+|++|..+|.+++..+ |++ +. .++++|.++.. .++++.|+.+|++.+...|++.++...||.+|..
T Consensus 320 ~Gd~ekA~~yY~~s~k~~--~d~~~l--~~~GlgQm~i~-------~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~ 388 (1018)
T KOG2002|consen 320 QGDFEKAFKYYMESLKAD--NDNFVL--PLVGLGQMYIK-------RGDLEESKFCFEKVLKQLPNNYETMKILGCLYAH 388 (1018)
T ss_pred hccHHHHHHHHHHHHccC--CCCccc--cccchhHHHHH-------hchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHh
Confidence 777777777777777776 554 33 66777777755 4477777777777777777777777777777776
Q ss_pred cC----CHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH----------------HHHHhhHHHHHHcC
Q psy8160 214 VG----KVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL----------------NKYRDLGDFLVINN 273 (324)
Q Consensus 214 ~~----~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~----------------~~~~~lg~~~~~~~ 273 (324)
.+ .-+.|.....+++...|.+.++|..++.++..... +.. +..| +++.++|..+...|
T Consensus 389 ~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~-~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g 466 (1018)
T KOG2002|consen 389 SAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDP-WAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLG 466 (1018)
T ss_pred hhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcCh-HHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhc
Confidence 64 45667777777777777777777777777766655 443 4444 67778888888888
Q ss_pred CCCcchHHHHHHHhhhc-----CCCh---h--hhhhchhhhccCChhhHHHHHHHHhh
Q psy8160 274 IPTSNNNRQCYNSYSTS-----IASC---K--HINNNKDFSNNSNREDYHQALNKYRD 321 (324)
Q Consensus 274 ~~~~~~A~~~~~~al~~-----~p~~---~--~~~~~l~~~~~~~~~~~~~a~~~~~~ 321 (324)
++.. |...|..|+.. +++. + ....|++.+ .....++..|-+.|++
T Consensus 467 ~~~~--A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl-~E~l~~~~~A~e~Yk~ 521 (1018)
T KOG2002|consen 467 NIEK--ALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL-LEELHDTEVAEEMYKS 521 (1018)
T ss_pred ChHH--HHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH-HHhhhhhhHHHHHHHH
Confidence 8888 88888887765 1211 1 124444433 2334556666565554
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.2e-21 Score=179.90 Aligned_cols=175 Identities=12% Similarity=0.072 Sum_probs=133.8
Q ss_pred HHhhcHHHHHHHHHHHHhcCC-CCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc----HHHHHHH
Q psy8160 133 EVQRKYKTAKDSYEQLLKEDD-LPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS----GQSLYLL 207 (324)
Q Consensus 133 ~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~l 207 (324)
...|++++|+..|++++...+ .|.. +...+|.++.. .+++++|+..|++++..+|.+ ......+
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~----a~~~la~~yl~-------~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L 316 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPW----AQRWVASAYLK-------LHQPEKAQSILTELFYHPETIADLSDEELADL 316 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHH----HHHHHHHHHHh-------cCCcHHHHHHHHHHhhcCCCCCCCChHHHHHH
Confidence 455777788888887776641 1222 33334666655 458888999999988877765 3556777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCC---------------HHHHHHhHHHHhhcCCCHHHHHHHH-----------HH
Q psy8160 208 GRCFAAVGKVHDAFLAYRNSVEKSEGN---------------ADTWCSIGNKDFSNNSNREDYHQAL-----------NK 261 (324)
Q Consensus 208 g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~~~~~~~A~~~~-----------~~ 261 (324)
+.++...|++++|+..++++....|.. ..++..+|.++...|+ +++|+..+ .+
T Consensus 317 ~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~-~~eA~~~l~~al~~~P~n~~l 395 (765)
T PRK10049 317 FYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSND-LPQAEMRARELAYNAPGNQGL 395 (765)
T ss_pred HHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHH
Confidence 778888899999999999888877631 3466788889999999 99999888 78
Q ss_pred HHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHhhc
Q psy8160 262 YRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYRDL 322 (324)
Q Consensus 262 ~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 322 (324)
+..+|.++...|++++ |++.++++++++|+++.+...++.. ....+++.+|...++++
T Consensus 396 ~~~lA~l~~~~g~~~~--A~~~l~~al~l~Pd~~~l~~~~a~~-al~~~~~~~A~~~~~~l 453 (765)
T PRK10049 396 RIDYASVLQARGWPRA--AENELKKAEVLEPRNINLEVEQAWT-ALDLQEWRQMDVLTDDV 453 (765)
T ss_pred HHHHHHHHHhcCCHHH--HHHHHHHHHhhCCCChHHHHHHHHH-HHHhCCHHHHHHHHHHH
Confidence 8899999999999999 9999999999999998877777654 35667888888887764
|
|
| >KOG0547|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.6e-21 Score=161.11 Aligned_cols=292 Identities=12% Similarity=0.108 Sum_probs=239.6
Q ss_pred HhhhhccccccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHhc------
Q psy8160 8 NLVEGIVTSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLI------ 79 (324)
Q Consensus 8 ~~~~~~~~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~------ 79 (324)
.|...+..|..+.+..-.+..++ ++.++...++|+++|++. .++++.+..+-.+|++.+|+....-..+
T Consensus 141 AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~---KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n 217 (606)
T KOG0547|consen 141 AIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYV---KALLRRASAHEQLGKFDEALFDVTVLCILEGFQN 217 (606)
T ss_pred HHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHH---HHHHHHHHHHHhhccHHHHHHhhhHHHHhhhccc
Confidence 45555556777777777666666 999999999999999864 4789999999999999988875443221
Q ss_pred -----------------------------------------------------CCCC-----------------------
Q psy8160 80 -----------------------------------------------------DASP----------------------- 83 (324)
Q Consensus 80 -----------------------------------------------------~~~~----------------------- 83 (324)
++.+
T Consensus 218 ~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~ 297 (606)
T KOG0547|consen 218 ASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLK 297 (606)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHH
Confidence 0000
Q ss_pred ----------------------------chhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHh
Q psy8160 84 ----------------------------CTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQ 135 (324)
Q Consensus 84 ----------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~ 135 (324)
..+....|..+...|++..|.+.++.++...|... ..+..+|.+|...
T Consensus 298 a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~----~lyI~~a~~y~d~ 373 (606)
T KOG0547|consen 298 AYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN----SLYIKRAAAYADE 373 (606)
T ss_pred HHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc----hHHHHHHHHHhhh
Confidence 01111135555566899999999999998888776 5688999999999
Q ss_pred hcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcC
Q psy8160 136 RKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVG 215 (324)
Q Consensus 136 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 215 (324)
.+.++....|.++..++ |.+ ++++++.|.+++- .+++++|+..|+++++++|.+.-++.+++....+++
T Consensus 374 ~~~~~~~~~F~~A~~ld--p~n--~dvYyHRgQm~fl-------L~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~ 442 (606)
T KOG0547|consen 374 NQSEKMWKDFNKAEDLD--PEN--PDVYYHRGQMRFL-------LQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQH 442 (606)
T ss_pred hccHHHHHHHHHHHhcC--CCC--CchhHhHHHHHHH-------HHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHH
Confidence 99999999999999999 887 5599999999977 559999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH-----------------HHHHhhHHHH-HHcCCCCc
Q psy8160 216 KVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL-----------------NKYRDLGDFL-VINNIPTS 277 (324)
Q Consensus 216 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-----------------~~~~~lg~~~-~~~~~~~~ 277 (324)
+++++...|+.+....|+.++.+...|.++..+++ +++|++.| ..+..-|.+. .=.+++..
T Consensus 443 k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqq-Fd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~ 521 (606)
T KOG0547|consen 443 KIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQ-FDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQ 521 (606)
T ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHh-HHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHH
Confidence 99999999999999999999999999999999999 99999999 1122222221 12268889
Q ss_pred chHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHhh
Q psy8160 278 NNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYRD 321 (324)
Q Consensus 278 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 321 (324)
|+..+++|+++||.+..+...++... .++++.++|++-|.+
T Consensus 522 --a~~Ll~KA~e~Dpkce~A~~tlaq~~-lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 522 --AENLLRKAIELDPKCEQAYETLAQFE-LQRGKIDEAIELFEK 562 (606)
T ss_pred --HHHHHHHHHccCchHHHHHHHHHHHH-HHHhhHHHHHHHHHH
Confidence 99999999999999999999998876 478999999998865
|
|
| >KOG1129|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.1e-22 Score=158.05 Aligned_cols=234 Identities=15% Similarity=0.208 Sum_probs=207.4
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Q psy8160 54 HLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHE 133 (324)
Q Consensus 54 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~ 133 (324)
-..+|.||...|-+.+|.+.|+.++...........++.+|....+...|+..+...++..|.+. ..+..++.++.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~V----T~l~g~ARi~e 301 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDV----TYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchh----hhhhhhHHHHH
Confidence 35799999999999999999999995445566777899999999999999999999998888775 67888899999
Q ss_pred HhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHH
Q psy8160 134 VQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAA 213 (324)
Q Consensus 134 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 213 (324)
.++++++|+++|+.+++.. |.++++-+....+..| -++.+-|+.+|++.+++.-.+++.++++|.|++.
T Consensus 302 am~~~~~a~~lYk~vlk~~--~~nvEaiAcia~~yfY---------~~~PE~AlryYRRiLqmG~~speLf~NigLCC~y 370 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLH--PINVEAIACIAVGYFY---------DNNPEMALRYYRRILQMGAQSPELFCNIGLCCLY 370 (478)
T ss_pred HHHhHHHHHHHHHHHHhcC--Cccceeeeeeeecccc---------CCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHh
Confidence 9999999999999999999 8887765666666666 3389999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHccCCC---CHHHHHHhHHHHhhcCCCHHHHHHHH-----------HHHHhhHHHHHHcCCCCcch
Q psy8160 214 VGKVHDAFLAYRNSVEKSEG---NADTWCSIGNKDFSNNSNREDYHQAL-----------NKYRDLGDFLVINNIPTSNN 279 (324)
Q Consensus 214 ~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~~~ 279 (324)
.++++-++..|++|+....+ -++.|+++|.+....|+ +.-|..+| +++.+||.+-.+.|+.++
T Consensus 371 aqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD-~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~-- 447 (478)
T KOG1129|consen 371 AQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGD-FNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILG-- 447 (478)
T ss_pred hcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccc-hHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHH--
Confidence 99999999999999986543 37899999999999999 99999999 899999999999999999
Q ss_pred HHHHHHHhhhcCCChhhhhhchhhhc
Q psy8160 280 NRQCYNSYSTSIASCKHINNNKDFSN 305 (324)
Q Consensus 280 A~~~~~~al~~~p~~~~~~~~l~~~~ 305 (324)
|...+..|-...|.......|+.++.
T Consensus 448 Arsll~~A~s~~P~m~E~~~Nl~~~s 473 (478)
T KOG1129|consen 448 ARSLLNAAKSVMPDMAEVTTNLQFMS 473 (478)
T ss_pred HHHHHHHhhhhCccccccccceeEEe
Confidence 99999999999999888888887754
|
|
| >KOG2076|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-20 Score=168.40 Aligned_cols=291 Identities=12% Similarity=0.122 Sum_probs=231.7
Q ss_pred hhccccccchhhhHhHHHHH----HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCch
Q psy8160 11 EGIVTSVRVPKLQQFGKTLN----IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCT 85 (324)
Q Consensus 11 ~~~~~~~~~~~l~~~~~~~~----~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~ 85 (324)
.++++|++...||.++.++- ++|.+.+..+++.+|. +..+|+.||.+|..+|+.++|+..+-.|- ++|++..
T Consensus 132 ~~~l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~---~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e 208 (895)
T KOG2076|consen 132 KSKLAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPR---NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYE 208 (895)
T ss_pred ccccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc---chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChH
Confidence 34667777777888776666 9999999999999986 55689999999999999999999999999 9999999
Q ss_pred hhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCC-chh--hHH
Q psy8160 86 FTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPV-HLK--ADI 162 (324)
Q Consensus 86 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~--~~~ 162 (324)
.|..++.....+|.+++|.-+|.+++..+|+.. ...+..+.++..+|+...|.+.|.+++... |+ +.+ -..
T Consensus 209 ~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~----~~~~ers~L~~~~G~~~~Am~~f~~l~~~~--p~~d~er~~d~ 282 (895)
T KOG2076|consen 209 LWKRLADLSEQLGNINQARYCYSRAIQANPSNW----ELIYERSSLYQKTGDLKRAMETFLQLLQLD--PPVDIERIEDL 282 (895)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCCcch----HHHHHHHHHHHHhChHHHHHHHHHHHHhhC--CchhHHHHHHH
Confidence 999999999999999999999999999999987 788889999999999999999999999998 52 211 122
Q ss_pred HHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-----------
Q psy8160 163 CRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEA--DPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVE----------- 229 (324)
Q Consensus 163 ~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~----------- 229 (324)
....+..+.. .++.+.|++.++.++.. +....+.+..++.++.....++.|......-..
T Consensus 283 i~~~~~~~~~-------~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~ 355 (895)
T KOG2076|consen 283 IRRVAHYFIT-------HNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWD 355 (895)
T ss_pred HHHHHHHHHH-------hhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhh
Confidence 2333444433 22447778888777762 222224444555566666555555554433322
Q ss_pred ----------------------------------------------------cCC-CCHHHHHHhHHHHhhcCCCHHHHH
Q psy8160 230 ----------------------------------------------------KSE-GNADTWCSIGNKDFSNNSNREDYH 256 (324)
Q Consensus 230 ----------------------------------------------------~~p-~~~~~~~~lg~~~~~~~~~~~~A~ 256 (324)
..| ++++.++.++.++...|+ +.+|+
T Consensus 356 ~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~-~~~Al 434 (895)
T KOG2076|consen 356 TDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGK-YKEAL 434 (895)
T ss_pred hhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhccc-HHHHH
Confidence 011 236778899999999999 99999
Q ss_pred HHH------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHhh
Q psy8160 257 QAL------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYRD 321 (324)
Q Consensus 257 ~~~------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 321 (324)
..| .+|+.+|.||...|.+++ |+.+|++++.+.|++..++-.|..+. ...|+.++|++....
T Consensus 435 ~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~--A~e~y~kvl~~~p~~~D~Ri~Lasl~-~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 435 RLLSPITNREGYQNAFVWYKLARCYMELGEYEE--AIEFYEKVLILAPDNLDARITLASLY-QQLGNHEKALETLEQ 508 (895)
T ss_pred HHHHHHhcCccccchhhhHHHHHHHHHHhhHHH--HHHHHHHHHhcCCCchhhhhhHHHHH-HhcCCHHHHHHHHhc
Confidence 999 699999999999999999 99999999999999999999988764 456888899887654
|
|
| >KOG2002|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.4e-22 Score=177.82 Aligned_cols=283 Identities=16% Similarity=0.100 Sum_probs=225.7
Q ss_pred cccccchhhhHhHHHHH--HHHHHHHHHHhcc-----CCCcc--cchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCC
Q psy8160 14 VTSVRVPKLQQFGKTLN--IKAIKTFQQLLYV-----DPSYL--RANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASP 83 (324)
Q Consensus 14 ~~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~-----~p~~~--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~ 83 (324)
+-|++..++|-+++.++ ++|...|.+++.. +++-. .+....|++|.+.-..++++.|.+.|..++ ..|+.
T Consensus 450 ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~Y 529 (1018)
T KOG2002|consen 450 IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGY 529 (1018)
T ss_pred CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchh
Confidence 55666666776666666 7777777777766 12211 112246777888888888888888888877 77888
Q ss_pred chhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHH
Q psy8160 84 CTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADIC 163 (324)
Q Consensus 84 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 163 (324)
...+..+|-+....+...+|...+..++..+..++ +++..+|.+|....++..|..-|+.+++..... ..+.+.
T Consensus 530 Id~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np----~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~--~D~Ysl 603 (1018)
T KOG2002|consen 530 IDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNP----NARSLLGNLHLKKSEWKPAKKKFETILKKTSTK--TDAYSL 603 (1018)
T ss_pred HHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCc----HHHHHHHHHHHhhhhhcccccHHHHHHhhhccC--CchhHH
Confidence 88877777666677777888888887777666665 778888888888888888888777777654222 225577
Q ss_pred HHHHHHHHhhhhhc-----ccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q psy8160 164 RQLGWMYHCIDTLG-----EKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTW 238 (324)
Q Consensus 164 ~~l~~~~~~~~~~~-----~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 238 (324)
..||.++++.-... ...+.+++|+..|.+++..+|.|..+-..+|.|+...|++.+|+..|.++.+.-.+++++|
T Consensus 604 iaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~ 683 (1018)
T KOG2002|consen 604 IALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVW 683 (1018)
T ss_pred HHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCcee
Confidence 78888775422111 1345789999999999999999999999999999999999999999999999888899999
Q ss_pred HHhHHHHhhcCCCHHHHHHHH-------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhc
Q psy8160 239 CSIGNKDFSNNSNREDYHQAL-------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSN 305 (324)
Q Consensus 239 ~~lg~~~~~~~~~~~~A~~~~-------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 305 (324)
.++|.||..+|+ |..|++.| ++...||.++...|.+.+ |.+...+|+...|.++.+..|++++.
T Consensus 684 lNlah~~~e~~q-y~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~e--ak~~ll~a~~~~p~~~~v~FN~a~v~ 760 (1018)
T KOG2002|consen 684 LNLAHCYVEQGQ-YRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQE--AKEALLKARHLAPSNTSVKFNLALVL 760 (1018)
T ss_pred eeHHHHHHHHHH-HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHH--HHHHHHHHHHhCCccchHHhHHHHHH
Confidence 999999999999 99999999 888999999999999999 99999999999999999999988653
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-20 Score=176.36 Aligned_cols=272 Identities=11% Similarity=0.011 Sum_probs=195.4
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTL 109 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 109 (324)
++|++.|+++++++|+. ..++..+|.++...|++++|+..+++++ .+|.+.. +..+|.++...|++++|+..+++
T Consensus 66 ~~A~~~~~~al~~~P~~---~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~ 141 (765)
T PRK10049 66 QNSLTLWQKALSLEPQN---DDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQ 141 (765)
T ss_pred HHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777777777777653 4456777777777777777777777777 7777777 77777777777777777777777
Q ss_pred HHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHh---------------------------------------
Q psy8160 110 CLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLK--------------------------------------- 150 (324)
Q Consensus 110 ~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--------------------------------------- 150 (324)
++...|... +++..+|.++...+..++|+..++++..
T Consensus 142 al~~~P~~~----~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~ 217 (765)
T PRK10049 142 ALPRAPQTQ----QYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALA 217 (765)
T ss_pred HHHhCCCCH----HHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHH
Confidence 777777665 6666777777777776666655553222
Q ss_pred -------cC-CCCCchh--hHHHH-HHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH-HHHHHHHHHHHHcCCHH
Q psy8160 151 -------ED-DLPVHLK--ADICR-QLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG-QSLYLLGRCFAAVGKVH 218 (324)
Q Consensus 151 -------~~-~~~~~~~--~~~~~-~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~lg~~~~~~~~~~ 218 (324)
.. ..|.... ..+.. .++.++ . .+++++|+..|+++++..|..| .+...+|.++...|+++
T Consensus 218 ~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll-~-------~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e 289 (765)
T PRK10049 218 QYDALEALWHDNPDATADYQRARIDRLGALL-A-------RDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPE 289 (765)
T ss_pred HHHHHHhhcccCCccchHHHHHHHHHHHHHH-H-------hhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcH
Confidence 00 0010000 00000 011111 1 3478899999999888764333 23344688999999999
Q ss_pred HHHHHHHHHHccCCCC----HHHHHHhHHHHhhcCCCHHHHHHHH--------------------------HHHHhhHHH
Q psy8160 219 DAFLAYRNSVEKSEGN----ADTWCSIGNKDFSNNSNREDYHQAL--------------------------NKYRDLGDF 268 (324)
Q Consensus 219 ~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~~~~~~A~~~~--------------------------~~~~~lg~~ 268 (324)
+|+..|++++..+|.+ ......++.++...|+ +++|+..+ .++..+|.+
T Consensus 290 ~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~-~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~ 368 (765)
T PRK10049 290 KAQSILTELFYHPETIADLSDEELADLFYSLLESEN-YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQV 368 (765)
T ss_pred HHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc-HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHH
Confidence 9999999999888876 3567778888899999 99999887 134678889
Q ss_pred HHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHhhc
Q psy8160 269 LVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYRDL 322 (324)
Q Consensus 269 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 322 (324)
+...|++++ |++.+++++...|+++.++..++.+. ..++++.+|+..++..
T Consensus 369 l~~~g~~~e--A~~~l~~al~~~P~n~~l~~~lA~l~-~~~g~~~~A~~~l~~a 419 (765)
T PRK10049 369 AKYSNDLPQ--AEMRARELAYNAPGNQGLRIDYASVL-QARGWPRAAENELKKA 419 (765)
T ss_pred HHHcCCHHH--HHHHHHHHHHhCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHH
Confidence 999999999 99999999999999999998888764 4678899999888753
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.8e-23 Score=173.57 Aligned_cols=247 Identities=15% Similarity=0.084 Sum_probs=106.8
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHh--c-CCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Q psy8160 54 HLRLGLMFKVNNEYDSALKHLTLCL--I-DASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAH 130 (324)
Q Consensus 54 ~~~lg~~~~~~~~~~~A~~~~~~al--~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~ 130 (324)
.+.+|.+++..|++++|++.+++.+ . +|++..++..+|.+....++++.|+..|++++...+... ..+..++.
T Consensus 11 ~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~----~~~~~l~~ 86 (280)
T PF13429_consen 11 ALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANP----QDYERLIQ 86 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----cccccccc
Confidence 4578999999999999999997665 4 589999999999999999999999999999998766644 55666777
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhC--CccHHHHHHHH
Q psy8160 131 LHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEAD--PKSGQSLYLLG 208 (324)
Q Consensus 131 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~lg 208 (324)
+ ...+++++|+..++++.+.. ++ ...+.....++.. .++++++...+.++.... |.++..|..+|
T Consensus 87 l-~~~~~~~~A~~~~~~~~~~~--~~---~~~l~~~l~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a 153 (280)
T PF13429_consen 87 L-LQDGDPEEALKLAEKAYERD--GD---PRYLLSALQLYYR-------LGDYDEAEELLEKLEELPAAPDSARFWLALA 153 (280)
T ss_dssp -------------------------------------H-HHH-------TT-HHHHHHHHHHHHH-T---T-HHHHHHHH
T ss_pred c-cccccccccccccccccccc--cc---cchhhHHHHHHHH-------HhHHHHHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 6 68899999999999888766 32 2244455555544 348889999999977554 67889999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH-----------HHHHhhHHHHHHcCCCCc
Q psy8160 209 RCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL-----------NKYRDLGDFLVINNIPTS 277 (324)
Q Consensus 209 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~ 277 (324)
.++...|++++|+..|+++++.+|+++.++..++.++...|+ ++++...+ ..|..+|.+|...|++++
T Consensus 154 ~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~-~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~ 232 (280)
T PF13429_consen 154 EIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGD-YDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEE 232 (280)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCH-HHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC-hHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccc
Confidence 999999999999999999999999999999999999999999 99866666 567889999999999999
Q ss_pred chHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHhh
Q psy8160 278 NNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYRD 321 (324)
Q Consensus 278 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 321 (324)
|+..|+++++.+|+||.+...++.+. ...|.+++|+.-++.
T Consensus 233 --Al~~~~~~~~~~p~d~~~~~~~a~~l-~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 233 --ALEYLEKALKLNPDDPLWLLAYADAL-EQAGRKDEALRLRRQ 273 (280)
T ss_dssp --HHHHHHHHHHHSTT-HHHHHHHHHHH-T--------------
T ss_pred --cccccccccccccccccccccccccc-ccccccccccccccc
Confidence 99999999999999999999888764 467888888877654
|
|
| >KOG1173|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-20 Score=161.07 Aligned_cols=251 Identities=13% Similarity=0.071 Sum_probs=161.2
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTL 109 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 109 (324)
++-.+.++.+++.+|=++.. .-+.+| |+...|+..+=...-.+.+ ..|+.+..|...|-.|...|++.+|.++|.+
T Consensus 261 ~~c~kit~~lle~dpfh~~~--~~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SK 337 (611)
T KOG1173|consen 261 KECLKITEELLEKDPFHLPC--LPLHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSK 337 (611)
T ss_pred HHHHHHhHHHHhhCCCCcch--HHHHHH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHH
Confidence 66666667777777643222 334445 5566666555555555555 6677666666667666666777777777776
Q ss_pred HHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHH
Q psy8160 110 CLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHC 189 (324)
Q Consensus 110 ~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~ 189 (324)
+...+|... .+|...|+.+...|+.++|+.+|..|-+.. |+... ....+|.-|.. +++++.|.++
T Consensus 338 at~lD~~fg----paWl~fghsfa~e~EhdQAmaaY~tAarl~--~G~hl--P~LYlgmey~~-------t~n~kLAe~F 402 (611)
T KOG1173|consen 338 ATTLDPTFG----PAWLAFGHSFAGEGEHDQAMAAYFTAARLM--PGCHL--PSLYLGMEYMR-------TNNLKLAEKF 402 (611)
T ss_pred HhhcCcccc----HHHHHHhHHhhhcchHHHHHHHHHHHHHhc--cCCcc--hHHHHHHHHHH-------hccHHHHHHH
Confidence 666655554 566666777766677777777776666666 55433 33334444433 3366667777
Q ss_pred HHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc----CCCC---HHHHHHhHHHHhhcCCCHHHHHHHH---
Q psy8160 190 LQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEK----SEGN---ADTWCSIGNKDFSNNSNREDYHQAL--- 259 (324)
Q Consensus 190 ~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----~p~~---~~~~~~lg~~~~~~~~~~~~A~~~~--- 259 (324)
|.+|+.+.|.+|-.+..+|.+.+..+.|.+|..+|+.++.. .+.. ...+.+||.++.+++. +++|+.+|
T Consensus 403 f~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~-~~eAI~~~q~a 481 (611)
T KOG1173|consen 403 FKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK-YEEAIDYYQKA 481 (611)
T ss_pred HHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh-HHHHHHHHHHH
Confidence 77777777777766667777766666777777777666621 1111 2345666777777777 77776666
Q ss_pred --------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchh
Q psy8160 260 --------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKD 302 (324)
Q Consensus 260 --------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 302 (324)
.++..+|.+|..+|+++. |+++|.+|+.+.|+|..+..-|+
T Consensus 482 L~l~~k~~~~~asig~iy~llgnld~--Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 482 LLLSPKDASTHASIGYIYHLLGNLDK--AIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred HHcCCCchhHHHHHHHHHHHhcChHH--HHHHHHHHHhcCCccHHHHHHHH
Confidence 566677777777777888 99999999999999876655554
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.7e-20 Score=169.94 Aligned_cols=237 Identities=14% Similarity=0.049 Sum_probs=193.9
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHh---------ccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVN---------NEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEY 100 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~---------~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~ 100 (324)
++|+..|+++++++|++ ..++..+|.++... +++++|+..+++++ .+|++..++..+|.++...|++
T Consensus 278 ~~A~~~~~~Al~ldP~~---a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 278 QQALKLLTQCVNMSPNS---IAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHhcCCcc---HHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 79999999999999975 45788889887644 34899999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccc
Q psy8160 101 DSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKS 180 (324)
Q Consensus 101 ~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 180 (324)
++|+..|++++..+|.+. .+++.+|.++...|++++|+..+++++..+ |.+.. ....++.+++. .
T Consensus 355 ~~A~~~~~~Al~l~P~~~----~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~--~~~~~~~~~~~-------~ 419 (553)
T PRK12370 355 IVGSLLFKQANLLSPISA----DIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAA--AGITKLWITYY-------H 419 (553)
T ss_pred HHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChh--hHHHHHHHHHh-------c
Confidence 999999999999998886 789999999999999999999999999999 87633 44555555544 3
Q ss_pred hhHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHH-HHH
Q psy8160 181 HRETLAIHCLQKSIEAD-PKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDY-HQA 258 (324)
Q Consensus 181 ~~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A-~~~ 258 (324)
+++++|+..+++++... |+++..+..+|.++...|++++|...+.++....|.+..++..++.+|...|+ -..+ ++.
T Consensus 420 g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~a~~~l~~ 498 (553)
T PRK12370 420 TGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE-RALPTIRE 498 (553)
T ss_pred cCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH-HHHHHHHH
Confidence 48999999999999875 78899999999999999999999999999999999989999999998888776 3222 222
Q ss_pred H--------HHHHhhHHHHHHcCCCCcchHHHHHHHhhh
Q psy8160 259 L--------NKYRDLGDFLVINNIPTSNNNRQCYNSYST 289 (324)
Q Consensus 259 ~--------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~ 289 (324)
+ .-...+..+|.-.|+.+. +... +++.+
T Consensus 499 ll~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~-~~~~~ 534 (553)
T PRK12370 499 FLESEQRIDNNPGLLPLVLVAHGEAIA--EKMW-NKFKN 534 (553)
T ss_pred HHHHhhHhhcCchHHHHHHHHHhhhHH--HHHH-HHhhc
Confidence 2 111225555655665555 5444 55544
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.4e-20 Score=151.14 Aligned_cols=196 Identities=16% Similarity=0.116 Sum_probs=177.6
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHI 128 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~l 128 (324)
...+++.+|.++...|++++|+..+++++ .+|.+...+..+|.++...|++++|++.+++++...|... .++..+
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~~ 105 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG----DVLNNY 105 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----HHHHHH
Confidence 46789999999999999999999999999 9999999999999999999999999999999998877765 788999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHH
Q psy8160 129 AHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLG 208 (324)
Q Consensus 129 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg 208 (324)
|.++...|++++|+..|++++.....+.. ...+..+|.++.. .+++++|+..+.+++..+|.++..+..+|
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~-------~g~~~~A~~~~~~~~~~~~~~~~~~~~la 176 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQP--ARSLENAGLCALK-------AGDFDKAEKYLTRALQIDPQRPESLLELA 176 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhccccccc--hHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCcCChHHHHHHH
Confidence 99999999999999999999986522333 4588889999876 55999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 209 RCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 209 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
.++...|++++|+..+++++...|.++..+..++.++...|+ .++|....
T Consensus 177 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~ 226 (234)
T TIGR02521 177 ELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGD-VAAAQRYG 226 (234)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh-HHHHHHHH
Confidence 999999999999999999999999999999999999999999 88886653
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG0624|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-20 Score=150.74 Aligned_cols=268 Identities=13% Similarity=0.146 Sum_probs=205.4
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTL 109 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 109 (324)
..|+..|..+++.+|+ +..++|+.|.+|..+|.-.-|+..+.+++ +.|+...+....|.++..+|.+++|+..|.+
T Consensus 55 sDALt~yHaAve~dp~---~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~ 131 (504)
T KOG0624|consen 55 SDALTHYHAAVEGDPN---NYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQ 131 (504)
T ss_pred HHHHHHHHHHHcCCch---hHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHH
Confidence 8899999999999986 56688999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHhcCCCcccHHHHH------------HHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhc
Q psy8160 110 CLIDASPCTFTKLEVR------------FHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLG 177 (324)
Q Consensus 110 ~l~~~~~~~~~~~~~~------------~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 177 (324)
+|..+|...... ++. ......+...|+...|++....++++. |=+ +..+...+.||..
T Consensus 132 vl~~~~s~~~~~-eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~--~Wd--a~l~~~Rakc~i~----- 201 (504)
T KOG0624|consen 132 VLQHEPSNGLVL-EAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ--PWD--ASLRQARAKCYIA----- 201 (504)
T ss_pred HHhcCCCcchhH-HHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC--cch--hHHHHHHHHHHHh-----
Confidence 998888654321 222 122333445578888888888888877 544 4466777777755
Q ss_pred ccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH-------------------
Q psy8160 178 EKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTW------------------- 238 (324)
Q Consensus 178 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~------------------- 238 (324)
.++...||..++.+-++..++.+.++.++.+++..|+.+.++...+.+++++|++-..+
T Consensus 202 --~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ 279 (504)
T KOG0624|consen 202 --EGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQA 279 (504)
T ss_pred --cCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44777888888888888888888888888888888888888888888888888772211
Q ss_pred -------------------------------HHhHHHHhhcCCCHHHHHHHH-----------HHHHhhHHHHHHcCCCC
Q psy8160 239 -------------------------------CSIGNKDFSNNSNREDYHQAL-----------NKYRDLGDFLVINNIPT 276 (324)
Q Consensus 239 -------------------------------~~lg~~~~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~ 276 (324)
..+..|+..-++ +.+|++.+ +++...+..|.-...|+
T Consensus 280 ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~-~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD 358 (504)
T KOG0624|consen 280 IEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQ-FGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYD 358 (504)
T ss_pred HhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCC-HHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHH
Confidence 123455666666 77776666 67788888888888899
Q ss_pred cchHHHHHHHhhhcCCChhhhhhchhhhcc----CChhhHHHHH
Q psy8160 277 SNNNRQCYNSYSTSIASCKHINNNKDFSNN----SNREDYHQAL 316 (324)
Q Consensus 277 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~----~~~~~~~~a~ 316 (324)
. ||..|++|.+.+|+|..++..+..... ..+++|.+.+
T Consensus 359 ~--AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~kRDYYKIL 400 (504)
T KOG0624|consen 359 D--AIHDYEKALELNESNTRAREGLERAKRLKKQSGKRDYYKIL 400 (504)
T ss_pred H--HHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhccchHHHHh
Confidence 9 999999999999998888877664322 4555555543
|
|
| >KOG1173|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.9e-20 Score=158.14 Aligned_cols=253 Identities=9% Similarity=0.037 Sum_probs=226.3
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHI 128 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~l 128 (324)
+.++....+..++...+|.+..+.+...+ .||-+.......-.++...|+..+-...=-+.++..|... -.|+.+
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a----~sW~aV 318 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKA----LSWFAV 318 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCC----cchhhH
Confidence 34567778888999999999999999999 9998888776644477778877776666667788888776 679999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHH
Q psy8160 129 AHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLG 208 (324)
Q Consensus 129 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg 208 (324)
|..|...|++.+|..+|.++..++ |.. +.+|...|..+.. .++.++|+.+|..|-++.|......+.+|
T Consensus 319 g~YYl~i~k~seARry~SKat~lD--~~f--gpaWl~fghsfa~-------e~EhdQAmaaY~tAarl~~G~hlP~LYlg 387 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLD--PTF--GPAWLAFGHSFAG-------EGEHDQAMAAYFTAARLMPGCHLPSLYLG 387 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcC--ccc--cHHHHHHhHHhhh-------cchHHHHHHHHHHHHHhccCCcchHHHHH
Confidence 999999999999999999999999 776 5599999998855 45899999999999999999998889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH------------------HHHHhhHHHHH
Q psy8160 209 RCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL------------------NKYRDLGDFLV 270 (324)
Q Consensus 209 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~------------------~~~~~lg~~~~ 270 (324)
.-|..++++.-|..+|.+|+.+.|.+|-....+|.+.+..+. |.+|+.+| ..+.+||.+|+
T Consensus 388 mey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~-y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R 466 (611)
T KOG1173|consen 388 MEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEE-YPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR 466 (611)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhh-hHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH
Confidence 999999999999999999999999999999999999999999 99999999 34899999999
Q ss_pred HcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHhh
Q psy8160 271 INNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYRD 321 (324)
Q Consensus 271 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 321 (324)
+++.+++ |+.+|++++.+.|.++.+...++++.. -.|++++|++.|++
T Consensus 467 kl~~~~e--AI~~~q~aL~l~~k~~~~~asig~iy~-llgnld~Aid~fhK 514 (611)
T KOG1173|consen 467 KLNKYEE--AIDYYQKALLLSPKDASTHASIGYIYH-LLGNLDKAIDHFHK 514 (611)
T ss_pred HHhhHHH--HHHHHHHHHHcCCCchhHHHHHHHHHH-HhcChHHHHHHHHH
Confidence 9999999 999999999999999999999998765 46899999999875
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.9e-20 Score=167.74 Aligned_cols=244 Identities=12% Similarity=-0.007 Sum_probs=197.2
Q ss_pred HHHHHHHHHH---hccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhc---------ccHHHHHHHHHHHHHhcCCCccc
Q psy8160 54 HLRLGLMFKV---NNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVN---------NEYDSALKHLTLCLIDASPCTFT 120 (324)
Q Consensus 54 ~~~lg~~~~~---~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~~l~~~~~~~~~ 120 (324)
++..|..+.. .+++++|+.+|++++ .+|++..++..+|.++... +++++|+..+++++..+|.+.
T Consensus 261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~-- 338 (553)
T PRK12370 261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNP-- 338 (553)
T ss_pred HHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCH--
Confidence 4445654443 356789999999999 9999999999998876633 458999999999999998886
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc
Q psy8160 121 KLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS 200 (324)
Q Consensus 121 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 200 (324)
.++..+|.++...|++++|+..|+++++.+ |++ +.+++.+|.++.. .|++++|+..++++++++|.+
T Consensus 339 --~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~--~~a~~~lg~~l~~-------~G~~~eAi~~~~~Al~l~P~~ 405 (553)
T PRK12370 339 --QALGLLGLINTIHSEYIVGSLLFKQANLLS--PIS--ADIKYYYGWNLFM-------AGQLEEALQTINECLKLDPTR 405 (553)
T ss_pred --HHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCC--HHHHHHHHHHHHH-------CCCHHHHHHHHHHHHhcCCCC
Confidence 889999999999999999999999999999 988 5599999999976 559999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccC-CCCHHHHHHhHHHHhhcCCCHHHHHHHH-----------HHHHhhHHH
Q psy8160 201 GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKS-EGNADTWCSIGNKDFSNNSNREDYHQAL-----------NKYRDLGDF 268 (324)
Q Consensus 201 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~A~~~~-----------~~~~~lg~~ 268 (324)
+..++.++.++...|++++|+..+++++... |+++..+..+|.++...|+ +++|+..+ ..+..++.+
T Consensus 406 ~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~-~~eA~~~~~~~~~~~~~~~~~~~~l~~~ 484 (553)
T PRK12370 406 AAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGK-HELARKLTKEISTQEITGLIAVNLLYAE 484 (553)
T ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCC-HHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 8887777878888999999999999999875 8899999999999999999 99999998 456677888
Q ss_pred HHHcCCCCcchHHHHHHHhhh---cCCChhhhhhchhhhccCChhhHHHHHHHH
Q psy8160 269 LVINNIPTSNNNRQCYNSYST---SIASCKHINNNKDFSNNSNREDYHQALNKY 319 (324)
Q Consensus 269 ~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~ 319 (324)
|...|+ . |...+++.++ ..|.++.....+.. ....+++...+...
T Consensus 485 ~~~~g~--~--a~~~l~~ll~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~ 532 (553)
T PRK12370 485 YCQNSE--R--ALPTIREFLESEQRIDNNPGLLPLVLV--AHGEAIAEKMWNKF 532 (553)
T ss_pred HhccHH--H--HHHHHHHHHHHhhHhhcCchHHHHHHH--HHhhhHHHHHHHHh
Confidence 877774 6 6666666554 45555544332222 13334555555443
|
|
| >KOG1125|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.2e-21 Score=163.57 Aligned_cols=216 Identities=17% Similarity=0.240 Sum_probs=176.5
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTL 109 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 109 (324)
.+|.-+|+.+++.+|+ ..++|..||.+....++-..|+..+++++ +||++..+...||..|..+|.-.+|++++.+
T Consensus 302 ~~A~LafEAAVkqdP~---haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~ 378 (579)
T KOG1125|consen 302 SEAALAFEAAVKQDPQ---HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDK 378 (579)
T ss_pred hHHHHHHHHHHhhChH---HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 8899999999999976 56789999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHhcCCCcccHH---HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHH
Q psy8160 110 CLIDASPCTFTKL---EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLA 186 (324)
Q Consensus 110 ~l~~~~~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A 186 (324)
-+...|+...... .-.+....-......+..-.+.|-.+.... |....+++...||.+|+. .+++++|
T Consensus 379 Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~--~~~~DpdvQ~~LGVLy~l-------s~efdra 449 (579)
T KOG1125|consen 379 WIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQL--PTKIDPDVQSGLGVLYNL-------SGEFDRA 449 (579)
T ss_pred HHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhC--CCCCChhHHhhhHHHHhc-------chHHHHH
Confidence 9877765432100 000000000111112333345666666666 533347799999999976 5599999
Q ss_pred HHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 187 IHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 187 ~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
+.+|+.||..+|++...|..||-++....+..+|+..|++|+++.|....++++||++++.+|. |++|+++|
T Consensus 450 iDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~-ykEA~~hl 521 (579)
T KOG1125|consen 450 VDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGA-YKEAVKHL 521 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhh-HHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 99999988
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-21 Score=163.99 Aligned_cols=250 Identities=15% Similarity=0.083 Sum_probs=104.3
Q ss_pred hhhHhHHHHH--HHHHHHHHHHhccC-CCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHh
Q psy8160 21 KLQQFGKTLN--IKAIKTFQQLLYVD-PSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKV 96 (324)
Q Consensus 21 ~l~~~~~~~~--~~A~~~~~~~l~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~ 96 (324)
.++.+....+ ++|++.+.+.+... | +.+.+.+..+|.+....++++.|+..|++++ .++.+......++.+ ..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~--~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAP--PDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccc-cc
Confidence 4555444444 88999886655443 2 2345678888989999999999999999999 888877777777777 68
Q ss_pred cccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhh
Q psy8160 97 NNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTL 176 (324)
Q Consensus 97 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~ 176 (324)
.+++++|+..+++++...+.. ..+.....++...++++++...++++......+.+ +..+..+|.++..
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~-----~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~a~~~~~---- 158 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERDGDP-----RYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDS--ARFWLALAEIYEQ---- 158 (280)
T ss_dssp ---------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T---HHHHHHHHHHHHH----
T ss_pred ccccccccccccccccccccc-----chhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCC--HHHHHHHHHHHHH----
Confidence 899999999888887654322 44556677788889999999999887765533444 5588888888866
Q ss_pred cccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHH
Q psy8160 177 GEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYH 256 (324)
Q Consensus 177 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~ 256 (324)
.|+.++|+.+++++++.+|+++.++..++.++...|+++++...+.......|+++..|..+|.++...|+ +++|+
T Consensus 159 ---~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~-~~~Al 234 (280)
T PF13429_consen 159 ---LGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGR-YEEAL 234 (280)
T ss_dssp ---CCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT--HHHHH
T ss_pred ---cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccc-ccccc
Confidence 55899999999999999999999999999999999999998888888887778888899999999999999 99999
Q ss_pred HHH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhc
Q psy8160 257 QAL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTS 290 (324)
Q Consensus 257 ~~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~ 290 (324)
.+| .++..+|.++...|+.++ |...++++++.
T Consensus 235 ~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~--A~~~~~~~~~~ 277 (280)
T PF13429_consen 235 EYLEKALKLNPDDPLWLLAYADALEQAGRKDE--ALRLRRQALRL 277 (280)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHT--------------------
T ss_pred cccccccccccccccccccccccccccccccc--ccccccccccc
Confidence 998 677889999999999999 99999888753
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-19 Score=152.48 Aligned_cols=232 Identities=12% Similarity=0.108 Sum_probs=167.1
Q ss_pred HHHHHHHHHHhccCCCc-ccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSY-LRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLT 108 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 108 (324)
+.++..+.+++...|-. +..+..|+.+|.++...|++++|+..|++++ .+|++..++..+|.++...|++++|+..|+
T Consensus 43 e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 122 (296)
T PRK11189 43 EVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFD 122 (296)
T ss_pred HHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 78999999999754422 2346789999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHH
Q psy8160 109 LCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIH 188 (324)
Q Consensus 109 ~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~ 188 (324)
+++...|... .++.++|.++...|++++|++.|++++..+ |++.. .. .+.+.. .. .+++++|+.
T Consensus 123 ~Al~l~P~~~----~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~----~~-~~~~l~-~~----~~~~~~A~~ 186 (296)
T PRK11189 123 SVLELDPTYN----YAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPY----RA-LWLYLA-ES----KLDPKQAKE 186 (296)
T ss_pred HHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHH----HH-HHHHHH-Hc----cCCHHHHHH
Confidence 9999888876 789999999999999999999999999998 87631 11 112211 11 337899999
Q ss_pred HHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHH
Q psy8160 189 CLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDF 268 (324)
Q Consensus 189 ~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~ 268 (324)
.+.+++...+. ..|. .+.+....|+...+ ..+..+.+..+..+..- ....++|+++|.+
T Consensus 187 ~l~~~~~~~~~--~~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~-----------------~~~~ea~~~Lg~~ 245 (296)
T PRK11189 187 NLKQRYEKLDK--EQWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELA-----------------ERLCETYFYLAKY 245 (296)
T ss_pred HHHHHHhhCCc--cccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHH-----------------HHHHHHHHHHHHH
Confidence 99877654332 2332 45666667776443 23333332222222110 0001346666666
Q ss_pred HHHcCCCCcchHHHHHHHhhhcCC-Chhhhhhch
Q psy8160 269 LVINNIPTSNNNRQCYNSYSTSIA-SCKHINNNK 301 (324)
Q Consensus 269 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l 301 (324)
+...|++++ |+.+|++|++.+| +.+..+..+
T Consensus 246 ~~~~g~~~~--A~~~~~~Al~~~~~~~~e~~~~~ 277 (296)
T PRK11189 246 YLSLGDLDE--AAALFKLALANNVYNFVEHRYAL 277 (296)
T ss_pred HHHCCCHHH--HHHHHHHHHHhCCchHHHHHHHH
Confidence 666677888 9999999999997 555554443
|
|
| >KOG0624|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-19 Score=146.45 Aligned_cols=261 Identities=16% Similarity=0.169 Sum_probs=222.3
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHI 128 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~l 128 (324)
..+-++.+|.-++..|++..|+.+|..++ .||++..+.+..|.+|...|+...|+..+.++|...|+.. -+..+.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~----~ARiQR 112 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFM----AARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHH----HHHHHh
Confidence 45568999999999999999999999999 9999999999999999999999999999999999998876 678899
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCCCch-hhHHHHHHHHHH-----Hhh--hhhcccchhHHHHHHHHHHHhhhCCcc
Q psy8160 129 AHLHEVQRKYKTAKDSYEQLLKEDDLPVHL-KADICRQLGWMY-----HCI--DTLGEKSHRETLAIHCLQKSIEADPKS 200 (324)
Q Consensus 129 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~l~~~~-----~~~--~~~~~~~~~~~~A~~~~~~al~~~~~~ 200 (324)
|.++..+|++++|...|+.++..+ |++- ..++...++.+- ..+ +..| .|++..|+.+..+.+++.|-+
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~--~GD~~~ai~~i~~llEi~~Wd 188 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASG--SGDCQNAIEMITHLLEIQPWD 188 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhc--CCchhhHHHHHHHHHhcCcch
Confidence 999999999999999999999988 5331 133444444332 111 1122 568999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH---------------------
Q psy8160 201 GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL--------------------- 259 (324)
Q Consensus 201 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~--------------------- 259 (324)
...+...+.||...|+...||.-++.+-++..++.+.++.++.+++..|+ .+.++...
T Consensus 189 a~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd-~~~sL~~iRECLKldpdHK~Cf~~YKklk 267 (504)
T KOG0624|consen 189 ASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGD-AENSLKEIRECLKLDPDHKLCFPFYKKLK 267 (504)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhh-HHHHHHHHHHHHccCcchhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 88886443
Q ss_pred ----------------------------------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhh
Q psy8160 260 ----------------------------------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINN 299 (324)
Q Consensus 260 ----------------------------------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 299 (324)
.++..+..|+...+++.+ ||..+..+++.+|+|..+.-
T Consensus 268 Kv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~e--AiqqC~evL~~d~~dv~~l~ 345 (504)
T KOG0624|consen 268 KVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGE--AIQQCKEVLDIDPDDVQVLC 345 (504)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHH--HHHHHHHHHhcCchHHHHHH
Confidence 344557788888899999 99999999999999988766
Q ss_pred chhhhccCChhhHHHHHHHHhhc
Q psy8160 300 NKDFSNNSNREDYHQALNKYRDL 322 (324)
Q Consensus 300 ~l~~~~~~~~~~~~~a~~~~~~~ 322 (324)
..+... +..+.|+.|+..|...
T Consensus 346 dRAeA~-l~dE~YD~AI~dye~A 367 (504)
T KOG0624|consen 346 DRAEAY-LGDEMYDDAIHDYEKA 367 (504)
T ss_pred HHHHHH-hhhHHHHHHHHHHHHH
Confidence 555443 4568899999888753
|
|
| >KOG1129|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.3e-20 Score=148.91 Aligned_cols=243 Identities=13% Similarity=0.084 Sum_probs=212.3
Q ss_pred HHHHhccHHHHHHHHHHHh-cC---CCC-------chhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q psy8160 60 MFKVNNEYDSALKHLTLCL-ID---ASP-------CTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHI 128 (324)
Q Consensus 60 ~~~~~~~~~~A~~~~~~al-~~---~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~l 128 (324)
+|+..+|...|-......+ .+ |+. ..+...+|.+|...|-+.+|.+.++..+...|.. +.+..+
T Consensus 188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~-----dTfllL 262 (478)
T KOG1129|consen 188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHP-----DTFLLL 262 (478)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCch-----hHHHHH
Confidence 6777888888776555544 32 222 1223348999999999999999999999776543 688899
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHH
Q psy8160 129 AHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLG 208 (324)
Q Consensus 129 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg 208 (324)
+.+|....+++.|+..|.+.++.. |.++- .+..+++++.. ++++++|.++|+.+++.+|.+.++.-.+|
T Consensus 263 skvY~ridQP~~AL~~~~~gld~f--P~~VT--~l~g~ARi~ea-------m~~~~~a~~lYk~vlk~~~~nvEaiAcia 331 (478)
T KOG1129|consen 263 SKVYQRIDQPERALLVIGEGLDSF--PFDVT--YLLGQARIHEA-------MEQQEDALQLYKLVLKLHPINVEAIACIA 331 (478)
T ss_pred HHHHHHhccHHHHHHHHhhhhhcC--Cchhh--hhhhhHHHHHH-------HHhHHHHHHHHHHHHhcCCccceeeeeee
Confidence 999999999999999999999988 88744 78888888865 44899999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH--------------HHHHhhHHHHHHcCC
Q psy8160 209 RCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL--------------NKYRDLGDFLVINNI 274 (324)
Q Consensus 209 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~--------------~~~~~lg~~~~~~~~ 274 (324)
..|+-.++++-|+.+|++.+++.-.+|+.+.++|.|++..++ ++-++.+| ++|++||.+....|+
T Consensus 332 ~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ-~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD 410 (478)
T KOG1129|consen 332 VGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQ-IDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGD 410 (478)
T ss_pred eccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcc-hhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccc
Confidence 999999999999999999999999999999999999999999 99999988 899999999999999
Q ss_pred CCcchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHhhc
Q psy8160 275 PTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYRDL 322 (324)
Q Consensus 275 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 322 (324)
+.. |..+|+-++..||++....+||+.+.. ..|+..+|..-+...
T Consensus 411 ~nl--A~rcfrlaL~~d~~h~ealnNLavL~~-r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 411 FNL--AKRCFRLALTSDAQHGEALNNLAVLAA-RSGDILGARSLLNAA 455 (478)
T ss_pred hHH--HHHHHHHHhccCcchHHHHHhHHHHHh-hcCchHHHHHHHHHh
Confidence 999 999999999999999999999998865 568888888776543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-18 Score=137.40 Aligned_cols=261 Identities=18% Similarity=0.161 Sum_probs=210.6
Q ss_pred hHHHHH---HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhh-----HHHHHHHHh
Q psy8160 25 FGKTLN---IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFT-----KLEGLMFKV 96 (324)
Q Consensus 25 ~~~~~~---~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~-----~~la~~~~~ 96 (324)
++++++ ++|+..|..+++.+|+ ..++++.||..|...|..+.|+..-+..+..|+..... ..||.-|..
T Consensus 43 lNfLLs~Q~dKAvdlF~e~l~~d~~---t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~ 119 (389)
T COG2956 43 LNFLLSNQPDKAVDLFLEMLQEDPE---TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMA 119 (389)
T ss_pred HHHHhhcCcchHHHHHHHHHhcCch---hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Confidence 345555 9999999999999975 56789999999999999999999998777666665443 337889999
Q ss_pred cccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchh-hHHHHHHHHHHHhhhh
Q psy8160 97 NNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK-ADICRQLGWMYHCIDT 175 (324)
Q Consensus 97 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~l~~~~~~~~~ 175 (324)
.|-++.|+..|....+...... .+...+-.+|....++++|++.-++.....+.+...+ +..++.++..+..
T Consensus 120 aGl~DRAE~~f~~L~de~efa~----~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~--- 192 (389)
T COG2956 120 AGLLDRAEDIFNQLVDEGEFAE----GALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA--- 192 (389)
T ss_pred hhhhhHHHHHHHHHhcchhhhH----HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh---
Confidence 9999999999998876443333 6888999999999999999999999998885444433 5566666666544
Q ss_pred hcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-HHHHHHhHHHHhhcCCCHHH
Q psy8160 176 LGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN-ADTWCSIGNKDFSNNSNRED 254 (324)
Q Consensus 176 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~~~~~~~ 254 (324)
..+.+.|...+.++++.+|++..+-..+|.+....|+|+.|++.++.+++.+|+. +++.-.|-.||.+.|+ .++
T Consensus 193 ----~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~-~~~ 267 (389)
T COG2956 193 ----SSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGK-PAE 267 (389)
T ss_pred ----hhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCC-HHH
Confidence 4488899999999999999999999999999999999999999999999999987 6778889999999999 998
Q ss_pred HHHHH----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchh
Q psy8160 255 YHQAL----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKD 302 (324)
Q Consensus 255 A~~~~----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 302 (324)
.+..+ ++-.-+..+-....-.+. |.....+-+...|+-.....-++
T Consensus 268 ~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~--Aq~~l~~Ql~r~Pt~~gf~rl~~ 323 (389)
T COG2956 268 GLNFLRRAMETNTGADAELMLADLIELQEGIDA--AQAYLTRQLRRKPTMRGFHRLMD 323 (389)
T ss_pred HHHHHHHHHHccCCccHHHHHHHHHHHhhChHH--HHHHHHHHHhhCCcHHHHHHHHH
Confidence 88777 444455555555555677 88888888888898665544443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.3e-19 Score=135.64 Aligned_cols=188 Identities=19% Similarity=0.136 Sum_probs=166.4
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHI 128 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~l 128 (324)
...+...||.-|...|++..|.+-+++++ .||++..++..+|.+|...|+.+.|.+.|++++...|.+. +++.+.
T Consensus 34 aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G----dVLNNY 109 (250)
T COG3063 34 AAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNG----DVLNNY 109 (250)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc----chhhhh
Confidence 45689999999999999999999999999 9999999999999999999999999999999999999887 999999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHH
Q psy8160 129 AHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLG 208 (324)
Q Consensus 129 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg 208 (324)
|..+..+|++++|...|++++.....+.. +.++-++|+|..+ .|+.+.|..+|+++++.+|+.+.....++
T Consensus 110 G~FLC~qg~~~eA~q~F~~Al~~P~Y~~~--s~t~eN~G~Cal~-------~gq~~~A~~~l~raL~~dp~~~~~~l~~a 180 (250)
T COG3063 110 GAFLCAQGRPEEAMQQFERALADPAYGEP--SDTLENLGLCALK-------AGQFDQAEEYLKRALELDPQFPPALLELA 180 (250)
T ss_pred hHHHHhCCChHHHHHHHHHHHhCCCCCCc--chhhhhhHHHHhh-------cCCchhHHHHHHHHHHhCcCCChHHHHHH
Confidence 99999999999999999999987544443 5699999999977 45899999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCC
Q psy8160 209 RCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNS 250 (324)
Q Consensus 209 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 250 (324)
..++..|++-.|..++++....-+-..+.+.....+-...|+
T Consensus 181 ~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd 222 (250)
T COG3063 181 RLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGD 222 (250)
T ss_pred HHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhcc
Confidence 999999999999999999887777666655544455555565
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.2e-18 Score=137.32 Aligned_cols=228 Identities=15% Similarity=0.116 Sum_probs=202.5
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Q psy8160 55 LRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHE 133 (324)
Q Consensus 55 ~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~ 133 (324)
|--|.-+.-.++.++|+..|..++ .||...++...||++|...|..+.|+...+..+.....+...+..+.+.+|.-|.
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym 118 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYM 118 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Confidence 455777788899999999999999 9999999999999999999999999999997776544444466778999999999
Q ss_pred HhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH-----HHHHHHH
Q psy8160 134 VQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG-----QSLYLLG 208 (324)
Q Consensus 134 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~~lg 208 (324)
..|-++.|...|....+.. ... ..++..+..+|.. ..+|++|++.-++...+.+... ..++.++
T Consensus 119 ~aGl~DRAE~~f~~L~de~--efa--~~AlqqLl~IYQ~-------treW~KAId~A~~L~k~~~q~~~~eIAqfyCELA 187 (389)
T COG2956 119 AAGLLDRAEDIFNQLVDEG--EFA--EGALQQLLNIYQA-------TREWEKAIDVAERLVKLGGQTYRVEIAQFYCELA 187 (389)
T ss_pred HhhhhhHHHHHHHHHhcch--hhh--HHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHH
Confidence 9999999999999988765 222 3488899999966 5599999999999998887654 6789999
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH------------HHHHhhHHHHHHcCCCC
Q psy8160 209 RCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL------------NKYRDLGDFLVINNIPT 276 (324)
Q Consensus 209 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~------------~~~~~lg~~~~~~~~~~ 276 (324)
..+....+.+.|...+.+|++.+|++..+-..+|.++...|+ |+.|++.+ ++.-.|-.+|.+.|+..
T Consensus 188 q~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~-y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~ 266 (389)
T COG2956 188 QQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGD-YQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPA 266 (389)
T ss_pred HHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccc-hHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHH
Confidence 999999999999999999999999999999999999999999 99999999 77888999999999999
Q ss_pred cchHHHHHHHhhhcCCChhh
Q psy8160 277 SNNNRQCYNSYSTSIASCKH 296 (324)
Q Consensus 277 ~~~A~~~~~~al~~~p~~~~ 296 (324)
+ .+..+..+.+..|+..-
T Consensus 267 ~--~~~fL~~~~~~~~g~~~ 284 (389)
T COG2956 267 E--GLNFLRRAMETNTGADA 284 (389)
T ss_pred H--HHHHHHHHHHccCCccH
Confidence 9 99999999998887543
|
|
| >KOG1174|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.7e-18 Score=140.50 Aligned_cols=252 Identities=16% Similarity=0.090 Sum_probs=187.6
Q ss_pred HHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHH-----------------
Q psy8160 33 AIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMF----------------- 94 (324)
Q Consensus 33 A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~----------------- 94 (324)
+...+......- +.+......+|.+++..|++++|+..|+++. +||........-|.++
T Consensus 217 ~t~l~le~~~~l---r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf 293 (564)
T KOG1174|consen 217 QTFLMLHDNTTL---RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLF 293 (564)
T ss_pred hHHHHHHhhccC---CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHH
Confidence 334444444444 4467788999999999999999999999999 9998877655533333
Q ss_pred -----------------HhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCc
Q psy8160 95 -----------------KVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVH 157 (324)
Q Consensus 95 -----------------~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 157 (324)
....+++.|+.+-+++++.++.+. +++...|..+...++.++|+-.|+.+..+. |..
T Consensus 294 ~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~----~alilKG~lL~~~~R~~~A~IaFR~Aq~La--p~r 367 (564)
T KOG1174|consen 294 AKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNH----EALILKGRLLIALERHTQAVIAFRTAQMLA--PYR 367 (564)
T ss_pred hhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccc----hHHHhccHHHHhccchHHHHHHHHHHHhcc--hhh
Confidence 444566666666666666665554 556666666677777777777777776666 655
Q ss_pred hhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHH-HHHHHc-CCHHHHHHHHHHHHccCCCCH
Q psy8160 158 LKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLG-RCFAAV-GKVHDAFLAYRNSVEKSEGNA 235 (324)
Q Consensus 158 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg-~~~~~~-~~~~~A~~~~~~al~~~p~~~ 235 (324)
.+ ++.++-.+|.. .+++.+|.-.-..++...|.++.++..+| .+++.. .--++|.+++++++.+.|...
T Consensus 368 L~--~Y~GL~hsYLA-------~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~ 438 (564)
T KOG1174|consen 368 LE--IYRGLFHSYLA-------QKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYT 438 (564)
T ss_pred HH--HHHHHHHHHHh-------hchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccH
Confidence 33 66666666655 33666677777777777777777666665 333322 234569999999999999999
Q ss_pred HHHHHhHHHHhhcCCCHHHHHHHH----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhc
Q psy8160 236 DTWCSIGNKDFSNNSNREDYHQAL----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSN 305 (324)
Q Consensus 236 ~~~~~lg~~~~~~~~~~~~A~~~~----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 305 (324)
.+-..++.++...|. +++++..+ ..+..||.++...+.+++ |+++|..|+.+||++......+..+.
T Consensus 439 ~AV~~~AEL~~~Eg~-~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~--am~~y~~ALr~dP~~~~sl~Gl~~lE 515 (564)
T KOG1174|consen 439 PAVNLIAELCQVEGP-TKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQK--AMEYYYKALRQDPKSKRTLRGLRLLE 515 (564)
T ss_pred HHHHHHHHHHHhhCc-cchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHH--HHHHHHHHHhcCccchHHHHHHHHHH
Confidence 999999999999999 99999888 677889999999999999 99999999999999998887776543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-18 Score=145.79 Aligned_cols=215 Identities=13% Similarity=0.137 Sum_probs=157.8
Q ss_pred chhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHH
Q psy8160 19 VPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFK 95 (324)
Q Consensus 19 ~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~ 95 (324)
+..+|.+....+ ++|+..|.++++++|+. ..+++.+|.++...|++++|+..|++++ ++|++..++..+|.++.
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPDM---ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 445555444334 89999999999999874 5689999999999999999999999999 99999999999999999
Q ss_pred hcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhh
Q psy8160 96 VNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDT 175 (324)
Q Consensus 96 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~ 175 (324)
..|++++|++.+++++...|.+.. ..++ ..+....+++++|+..|.+++... +.... .+ .+..++.. .
T Consensus 144 ~~g~~~eA~~~~~~al~~~P~~~~--~~~~---~~l~~~~~~~~~A~~~l~~~~~~~--~~~~~--~~-~~~~~~lg--~ 211 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQDDPNDPY--RALW---LYLAESKLDPKQAKENLKQRYEKL--DKEQW--GW-NIVEFYLG--K 211 (296)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHH--HHHH---HHHHHccCCHHHHHHHHHHHHhhC--Ccccc--HH-HHHHHHcc--C
Confidence 999999999999999999887651 0111 123445678999999998877554 22211 11 22222211 0
Q ss_pred hcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CCHHHHHHhHHHHhhcC
Q psy8160 176 LGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSE-GNADTWCSIGNKDFSNN 249 (324)
Q Consensus 176 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~ 249 (324)
... ...++.+...++...++.|..+++|+.+|.++...|++++|+.+|++++..+| ++.+..+.+..+....+
T Consensus 212 ~~~-~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~ 285 (296)
T PRK11189 212 ISE-ETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLGQ 285 (296)
T ss_pred CCH-HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHh
Confidence 100 00122233333444566777889999999999999999999999999999997 66777666655544433
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.9e-18 Score=137.48 Aligned_cols=190 Identities=13% Similarity=0.110 Sum_probs=150.2
Q ss_pred chhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHH
Q psy8160 84 CTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADIC 163 (324)
Q Consensus 84 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 163 (324)
...+..+|.++...|++++|+..+++++...|... .++..+|.++...|++++|+..+++++... |.+ ..++
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~--~~~~ 102 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDY----LAYLALALYYQQLGELEKAEDSFRRALTLN--PNN--GDVL 102 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCC--HHHH
Confidence 44566678888889999999999999988776654 778888999999999999999999998887 766 3488
Q ss_pred HHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHh
Q psy8160 164 RQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEAD--PKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSI 241 (324)
Q Consensus 164 ~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 241 (324)
..+|.++.. .+++++|+..+++++... |.....+..+|.++...|++++|...+.+++..+|+++..+..+
T Consensus 103 ~~~~~~~~~-------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 175 (234)
T TIGR02521 103 NNYGTFLCQ-------QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLEL 175 (234)
T ss_pred HHHHHHHHH-------cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHH
Confidence 888888866 458899999999988753 45567888889999999999999999999999999888888888
Q ss_pred HHHHhhcCCCHHHHHHHH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcC
Q psy8160 242 GNKDFSNNSNREDYHQAL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSI 291 (324)
Q Consensus 242 g~~~~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~ 291 (324)
|.++...|+ +++|+..+ ..+..++.++...|+.++ |..+.+.+....
T Consensus 176 a~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--a~~~~~~~~~~~ 233 (234)
T TIGR02521 176 AELYYLRGQ-YKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAA--AQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHH--HHHHHHHHHhhC
Confidence 888888888 77777666 344456666666666666 666666555443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1125|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.1e-19 Score=151.45 Aligned_cols=224 Identities=13% Similarity=0.063 Sum_probs=194.2
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Q psy8160 55 LRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHE 133 (324)
Q Consensus 55 ~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~ 133 (324)
|..|..+++.|+..+|.-.|+.++ .||.+..+|..||.+....++-..|+..++++++..|.+. +++..||-.|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nl----eaLmaLAVSyt 364 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNL----EALMALAVSYT 364 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccH----HHHHHHHHHHh
Confidence 788999999999999999999999 9999999999999999999999999999999999999987 99999999999
Q ss_pred HhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhh----hhhcccchhHHHHHHHHHHHhhhCC--ccHHHHHHH
Q psy8160 134 VQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCI----DTLGEKSHRETLAIHCLQKSIEADP--KSGQSLYLL 207 (324)
Q Consensus 134 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~l 207 (324)
..|.-.+|+.++.+-+... |.... ...+..-... +..+ ......-.+.|..+....| .++++...|
T Consensus 365 Neg~q~~Al~~L~~Wi~~~--p~y~~----l~~a~~~~~~~~~~s~~~--~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~L 436 (579)
T KOG1125|consen 365 NEGLQNQALKMLDKWIRNK--PKYVH----LVSAGENEDFENTKSFLD--SSHLAHIQELFLEAARQLPTKIDPDVQSGL 436 (579)
T ss_pred hhhhHHHHHHHHHHHHHhC--ccchh----ccccCccccccCCcCCCC--HHHHHHHHHHHHHHHHhCCCCCChhHHhhh
Confidence 9999999999999998876 54311 1111000000 0000 1234555667777777778 789999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH-----------HHHHhhHHHHHHcCCCC
Q psy8160 208 GRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL-----------NKYRDLGDFLVINNIPT 276 (324)
Q Consensus 208 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~ 276 (324)
|.+|...|+|++|+.+|+.||..+|++...|..||..+....+ ..+||..| .++++||..+...|-|+
T Consensus 437 GVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~-s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~yk 515 (579)
T KOG1125|consen 437 GVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNR-SEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYK 515 (579)
T ss_pred HHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcc-cHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHH
Confidence 9999999999999999999999999999999999999999999 99999999 88999999999999999
Q ss_pred cchHHHHHHHhhhcCCC
Q psy8160 277 SNNNRQCYNSYSTSIAS 293 (324)
Q Consensus 277 ~~~A~~~~~~al~~~p~ 293 (324)
+ |+++|-.||.+.+.
T Consensus 516 E--A~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 516 E--AVKHLLEALSMQRK 530 (579)
T ss_pred H--HHHHHHHHHHhhhc
Confidence 9 99999999998776
|
|
| >KOG4162|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.2e-18 Score=148.80 Aligned_cols=254 Identities=17% Similarity=0.175 Sum_probs=199.4
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-c-CCCCchhhHHHHHHHHhcccHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-I-DASPCTFTKLEGLMFKVNNEYDSALKHLT 108 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 108 (324)
.++++.++++++.+|++| .+.|.++.-|..+++.+.|+.+.++++ . ..+....+.+++.++..++++.+|+...+
T Consensus 461 ~kslqale~av~~d~~dp---~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd 537 (799)
T KOG4162|consen 461 KKSLQALEEAVQFDPTDP---LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVD 537 (799)
T ss_pred HHHHHHHHHHHhcCCCCc---hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 889999999999998754 588999999999999999999999999 7 56778889999999999999999999999
Q ss_pred HHHHhcCCCcc---cHHH--------------------HHH----------------HHHHHHHHhhcHHHHHHHHHHHH
Q psy8160 109 LCLIDASPCTF---TKLE--------------------VRF----------------HIAHLHEVQRKYKTAKDSYEQLL 149 (324)
Q Consensus 109 ~~l~~~~~~~~---~~~~--------------------~~~----------------~la~~~~~~~~~~~A~~~~~~al 149 (324)
.++...+.+.. .+.+ .|- .-+..+...++...|++.++++.
T Consensus 538 ~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls 617 (799)
T KOG4162|consen 538 AALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS 617 (799)
T ss_pred HHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHH
Confidence 99988776321 0000 000 00111111223333444333332
Q ss_pred hcC-----------CC--------CCch---hhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHH
Q psy8160 150 KED-----------DL--------PVHL---KADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLL 207 (324)
Q Consensus 150 ~~~-----------~~--------~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 207 (324)
..- .. |++. .-..|...+..+.. .+..++|..++.++-.++|..+..|+..
T Consensus 618 ~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~-------~~~~~~a~~CL~Ea~~~~~l~~~~~~~~ 690 (799)
T KOG4162|consen 618 SLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLL-------SGNDDEARSCLLEASKIDPLSASVYYLR 690 (799)
T ss_pred HHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHh-------cCCchHHHHHHHHHHhcchhhHHHHHHh
Confidence 210 00 1110 01244455555544 4478889999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHH--HH-----------HHHHhhHHHHHHcCC
Q psy8160 208 GRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQ--AL-----------NKYRDLGDFLVINNI 274 (324)
Q Consensus 208 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~--~~-----------~~~~~lg~~~~~~~~ 274 (324)
|.++...|++.+|.+.|..|+.++|+++.....+|.++.+.|+ ..-|.+ .+ ++|+.+|.++.+.|+
T Consensus 691 G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~-~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd 769 (799)
T KOG4162|consen 691 GLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGS-PRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGD 769 (799)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-cchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc
Confidence 9999999999999999999999999999999999999999999 888777 44 999999999999999
Q ss_pred CCcchHHHHHHHhhhcCCChhhh
Q psy8160 275 PTSNNNRQCYNSYSTSIASCKHI 297 (324)
Q Consensus 275 ~~~~~A~~~~~~al~~~p~~~~~ 297 (324)
.++ |.++|+.|+++++++|.-
T Consensus 770 ~~~--Aaecf~aa~qLe~S~PV~ 790 (799)
T KOG4162|consen 770 SKQ--AAECFQAALQLEESNPVL 790 (799)
T ss_pred hHH--HHHHHHHHHhhccCCCcc
Confidence 999 999999999999999864
|
|
| >KOG2003|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.4e-18 Score=144.02 Aligned_cols=218 Identities=17% Similarity=0.128 Sum_probs=145.6
Q ss_pred cHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHH
Q psy8160 66 EYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDS 144 (324)
Q Consensus 66 ~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 144 (324)
++-.|-.+-..++ +|.-+..+....|.+-...|+++.|.++|+.++.....+. ++++++|..+..+|+.++|+++
T Consensus 471 ~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~----ealfniglt~e~~~~ldeald~ 546 (840)
T KOG2003|consen 471 DFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCT----EALFNIGLTAEALGNLDEALDC 546 (840)
T ss_pred chhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHH----HHHHHhcccHHHhcCHHHHHHH
Confidence 4555555555555 5555555555566666667777777777777776555544 6677777777777777777777
Q ss_pred HHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHH
Q psy8160 145 YEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAY 224 (324)
Q Consensus 145 ~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~ 224 (324)
|-++-.+- -++ ++++.+++.+|.. +.+..+|++++-++..+-|++|.++..||.+|-+.|+-.+|.+++
T Consensus 547 f~klh~il--~nn--~evl~qianiye~-------led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ 615 (840)
T KOG2003|consen 547 FLKLHAIL--LNN--AEVLVQIANIYEL-------LEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCH 615 (840)
T ss_pred HHHHHHHH--Hhh--HHHHHHHHHHHHH-------hhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhh
Confidence 76655443 333 4477777777744 226667777777777777777777777777777777777777777
Q ss_pred HHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH----------HHH-HhhHHHHHHcCCCCcchHHHHHHHhhhcCCC
Q psy8160 225 RNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL----------NKY-RDLGDFLVINNIPTSNNNRQCYNSYSTSIAS 293 (324)
Q Consensus 225 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~----------~~~-~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~ 293 (324)
-......|.+.++.-.||..|....- +++|+.+| ..| ..++.|+.+.|+|+. |.+.|+......|.
T Consensus 616 ydsyryfp~nie~iewl~ayyidtqf-~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqk--a~d~yk~~hrkfpe 692 (840)
T KOG2003|consen 616 YDSYRYFPCNIETIEWLAAYYIDTQF-SEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQK--AFDLYKDIHRKFPE 692 (840)
T ss_pred hhcccccCcchHHHHHHHHHHHhhHH-HHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHH--HHHHHHHHHHhCcc
Confidence 77777777777777777777777777 77777776 333 345667777777777 77777777777777
Q ss_pred hhhhhhch
Q psy8160 294 CKHINNNK 301 (324)
Q Consensus 294 ~~~~~~~l 301 (324)
+......|
T Consensus 693 dldclkfl 700 (840)
T KOG2003|consen 693 DLDCLKFL 700 (840)
T ss_pred chHHHHHH
Confidence 66654443
|
|
| >KOG2003|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-17 Score=139.46 Aligned_cols=253 Identities=9% Similarity=0.079 Sum_probs=210.1
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCc-hhhHHHHHHHHhc--ccHHHHHHHHHHHHHhcCCCcccHHHHHH
Q psy8160 51 NEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPC-TFTKLEGLMFKVN--NEYDSALKHLTLCLIDASPCTFTKLEVRF 126 (324)
Q Consensus 51 ~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~-~~~~~la~~~~~~--~~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 126 (324)
.+.-...+--+.+.|+++.|++.++-.- .|.... .+...+..++..+ .++..|..+-..++....-+. .++.
T Consensus 419 ~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~----~a~~ 494 (840)
T KOG2003|consen 419 IDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNA----AALT 494 (840)
T ss_pred hhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCH----HHhh
Confidence 3445666778899999999999997554 443322 2334466666665 368999998888887655554 6788
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHH
Q psy8160 127 HIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYL 206 (324)
Q Consensus 127 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 206 (324)
+.|.+-+..|++++|.+.|++++..+ ... .++++++|..+.. .++.++|+.+|-+.-.+--++.+++++
T Consensus 495 nkgn~~f~ngd~dka~~~ykeal~nd--asc--~ealfniglt~e~-------~~~ldeald~f~klh~il~nn~evl~q 563 (840)
T KOG2003|consen 495 NKGNIAFANGDLDKAAEFYKEALNND--ASC--TEALFNIGLTAEA-------LGNLDEALDCFLKLHAILLNNAEVLVQ 563 (840)
T ss_pred cCCceeeecCcHHHHHHHHHHHHcCc--hHH--HHHHHHhcccHHH-------hcCHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 88999999999999999999999887 555 4499999999855 459999999999998888889999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH-----------HHHHhhHHHHHHcCCC
Q psy8160 207 LGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL-----------NKYRDLGDFLVINNIP 275 (324)
Q Consensus 207 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~ 275 (324)
++.+|..+.+..+|++++.++..+-|++|..+..||.+|-+.|+ -.+|.+++ ++---||..|....-.
T Consensus 564 ianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegd-ksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ 642 (840)
T KOG2003|consen 564 IANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGD-KSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFS 642 (840)
T ss_pred HHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccc-hhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHH
Confidence 99999999999999999999999999999999999999999999 99999987 5566688888888888
Q ss_pred CcchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHhhc
Q psy8160 276 TSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYRDL 322 (324)
Q Consensus 276 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 322 (324)
++ |+.+|++|.-+.|+-..++ .+-.++....|+|.+|++.|+|.
T Consensus 643 ek--ai~y~ekaaliqp~~~kwq-lmiasc~rrsgnyqka~d~yk~~ 686 (840)
T KOG2003|consen 643 EK--AINYFEKAALIQPNQSKWQ-LMIASCFRRSGNYQKAFDLYKDI 686 (840)
T ss_pred HH--HHHHHHHHHhcCccHHHHH-HHHHHHHHhcccHHHHHHHHHHH
Confidence 89 9999999999999855433 34457788889999999999974
|
|
| >KOG1840|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.9e-18 Score=148.13 Aligned_cols=232 Identities=15% Similarity=0.114 Sum_probs=188.5
Q ss_pred ccchHHHHHHHHHHHHhccHHHHHHHHHHHh-c--------CCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcC---
Q psy8160 48 LRANEVHLRLGLMFKVNNEYDSALKHLTLCL-I--------DASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDAS--- 115 (324)
Q Consensus 48 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~--- 115 (324)
|....+...+|..|..+|+|++|+..++.++ + .|.-......+|.+|..++++++|+..|++++....
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 4455677789999999999999999999999 6 344444445589999999999999999999987643
Q ss_pred -CCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC---CCchh-hHHHHHHHHHHHhhhhhcccchhHHHHHHHH
Q psy8160 116 -PCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDL---PVHLK-ADICRQLGWMYHCIDTLGEKSHRETLAIHCL 190 (324)
Q Consensus 116 -~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~ 190 (324)
......+.++.+||..|...|++++|..++++++.+... ..+.+ +..+..++.++.. .+++++|+.++
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~-------~~~~Eea~~l~ 348 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQS-------MNEYEEAKKLL 348 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHH-------hcchhHHHHHH
Confidence 344456778999999999999999999999999877421 11211 4456666666644 34899999999
Q ss_pred HHHhhhC--------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC--------CCCHHHHHHhHHHHhhcCCCHHH
Q psy8160 191 QKSIEAD--------PKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKS--------EGNADTWCSIGNKDFSNNSNRED 254 (324)
Q Consensus 191 ~~al~~~--------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~~~~~~~ 254 (324)
++++++- |.-+..+.+||.+|..+|++++|...|++|+.+. +........+|..|.+.+. +.+
T Consensus 349 q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~-~~~ 427 (508)
T KOG1840|consen 349 QKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKK-YEE 427 (508)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcc-cch
Confidence 9987652 2335788999999999999999999999999864 2335577889999999999 999
Q ss_pred HHHHH------------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhh
Q psy8160 255 YHQAL------------------NKYRDLGDFLVINNIPTSNNNRQCYNSYST 289 (324)
Q Consensus 255 A~~~~------------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~ 289 (324)
|.+.| ..+.+||.+|..+|++++ |+++-.+++.
T Consensus 428 a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~--a~~~~~~~~~ 478 (508)
T KOG1840|consen 428 AEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEA--AEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHH--HHHHHHHHHH
Confidence 98888 788999999999999999 9999999884
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.7e-17 Score=138.44 Aligned_cols=206 Identities=11% Similarity=0.046 Sum_probs=113.9
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhc-cHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccH--HHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNN-EYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEY--DSALKH 106 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~--~~A~~~ 106 (324)
++|+..+.++++++|+ ...++...|.++...| ++++++..+.+++ .+|.+..++...+.++...|+. ++++.+
T Consensus 54 erAL~lt~~aI~lnP~---~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 54 PRALDLTADVIRLNPG---NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred HHHHHHHHHHHHHCch---hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 5566666666666654 2345555666665555 4566666666666 6666666666555555555542 455556
Q ss_pred HHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHH
Q psy8160 107 LTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLA 186 (324)
Q Consensus 107 ~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A 186 (324)
+++++..+|.+. .+|...+.++...|++++|++.+.++++.+ |.+ ..+|..++.+.......|......+++
T Consensus 131 ~~kal~~dpkNy----~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d--~~N--~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 131 TRKILSLDAKNY----HAWSHRQWVLRTLGGWEDELEYCHQLLEED--VRN--NSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHhCcccH----HHHHHHHHHHHHhhhHHHHHHHHHHHHHHC--CCc--hhHHHHHHHHHHhccccccccccHHHH
Confidence 666665555554 556666666666666666666666666665 544 235666555553321111101112345
Q ss_pred HHHHHHHhhhCCccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhh
Q psy8160 187 IHCLQKSIEADPKSGQSLYLLGRCFAA----VGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFS 247 (324)
Q Consensus 187 ~~~~~~al~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 247 (324)
+.+..+++..+|++..+|..++.++.. .++..+|+..+.+++..+|.++.+..-|+++|..
T Consensus 203 l~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 203 LKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 555556666666666666666655555 2334456666666666566666655556655554
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.4e-17 Score=126.63 Aligned_cols=196 Identities=13% Similarity=0.100 Sum_probs=170.5
Q ss_pred hhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHH
Q psy8160 86 FTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQ 165 (324)
Q Consensus 86 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 165 (324)
+...||.-|..+|++..|.+.++++|..+|... .+|..+|.+|...|+.+.|.+.|++++.++ |++ .+++.+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~----~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--p~~--GdVLNN 108 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYY----LAHLVRAHYYQKLGENDLADESYRKALSLA--PNN--GDVLNN 108 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH----HHHHHHHHHHHHcCChhhHHHHHHHHHhcC--CCc--cchhhh
Confidence 344578899999999999999999999999886 889999999999999999999999999999 888 669999
Q ss_pred HHHHHHhhhhhcccchhHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHH
Q psy8160 166 LGWMYHCIDTLGEKSHRETLAIHCLQKSIEA--DPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243 (324)
Q Consensus 166 l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 243 (324)
.|+.... .|++++|...|++++.. .+..+.+|-++|.|..+.|+++.|.+.|+++++.+|+++.....++.
T Consensus 109 YG~FLC~-------qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~ 181 (250)
T COG3063 109 YGAFLCA-------QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELAR 181 (250)
T ss_pred hhHHHHh-------CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHH
Confidence 9999977 55999999999999864 35566899999999999999999999999999999999999999999
Q ss_pred HHhhcCCCHHHHHHHH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhh
Q psy8160 244 KDFSNNSNREDYHQAL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINN 299 (324)
Q Consensus 244 ~~~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 299 (324)
.++..|+ +..|...+ +.+.....+-...|+-.. |-.+=.+.-...|..+....
T Consensus 182 ~~~~~~~-y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~--a~~Y~~qL~r~fP~s~e~q~ 245 (250)
T COG3063 182 LHYKAGD-YAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAA--AQRYQAQLQRLFPYSEEYQT 245 (250)
T ss_pred HHHhccc-chHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHH--HHHHHHHHHHhCCCcHHHHh
Confidence 9999999 99998888 344444455666777777 66666667788898876544
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-16 Score=134.93 Aligned_cols=217 Identities=10% Similarity=0.044 Sum_probs=160.0
Q ss_pred HHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcc-cHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhc
Q psy8160 60 MFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNN-EYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRK 137 (324)
Q Consensus 60 ~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~ 137 (324)
++...+.+++|+..+.++| .+|.+..++...+.++...| ++++++..+++++..+|.+. .+|...+.+....|+
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkny----qaW~~R~~~l~~l~~ 121 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNY----QIWHHRRWLAEKLGP 121 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcch----HHhHHHHHHHHHcCc
Confidence 3444578889999999999 99999999999999999998 68999999999999999887 889999999988887
Q ss_pred H--HHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH-----HHHHHHHHH
Q psy8160 138 Y--KTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG-----QSLYLLGRC 210 (324)
Q Consensus 138 ~--~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~~lg~~ 210 (324)
. +++++.+.+++..+ |.+.+ +|...+++........+....++++++. .....++ .+...++..
T Consensus 122 ~~~~~el~~~~kal~~d--pkNy~--AW~~R~w~l~~l~~~~eeL~~~~~~I~~-----d~~N~sAW~~R~~vl~~~~~l 192 (320)
T PLN02789 122 DAANKELEFTRKILSLD--AKNYH--AWSHRQWVLRTLGGWEDELEYCHQLLEE-----DVRNNSAWNQRYFVITRSPLL 192 (320)
T ss_pred hhhHHHHHHHHHHHHhC--cccHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHH-----CCCchhHHHHHHHHHHhcccc
Confidence 4 77899999999999 98866 9999999996644333233344444432 1121222 111122110
Q ss_pred HHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhh----cCCCHHHHHHHH-----------HHHHhhHHHHHHcCC-
Q psy8160 211 FAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFS----NNSNREDYHQAL-----------NKYRDLGDFLVINNI- 274 (324)
Q Consensus 211 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~- 274 (324)
-......++++.+..+++.++|++..+|..++.++.. .+. ..+|+..+ .++--|+.+|....+
T Consensus 193 ~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~-~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~ 271 (320)
T PLN02789 193 GGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVS-DPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQP 271 (320)
T ss_pred ccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCccccc-chhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhcc
Confidence 0011124578888999999999999999999999988 455 56677776 455667888876432
Q ss_pred -----------------CCcchHHHHHHHhhhcCC
Q psy8160 275 -----------------PTSNNNRQCYNSYSTSIA 292 (324)
Q Consensus 275 -----------------~~~~~A~~~~~~al~~~p 292 (324)
..+ |...|+..-+.||
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~--a~~~~~~l~~~d~ 304 (320)
T PLN02789 272 TAEFRDTVDTLAEELSDSTL--AQAVCSELEVADP 304 (320)
T ss_pred chhhhhhhhccccccccHHH--HHHHHHHHHhhCc
Confidence 245 8888887766666
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-16 Score=139.99 Aligned_cols=270 Identities=11% Similarity=0.031 Sum_probs=143.1
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCc-hhhHHHHHHHHhcccHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPC-TFTKLEGLMFKVNNEYDSALKHLT 108 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~ 108 (324)
+.|.+...++.+..|+. .-.+.-.|.++..+|+++.|..++.++. ..|++. .+....+.++...|+++.|+..++
T Consensus 101 ~~A~~~l~~~~~~~~~~---~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~ 177 (409)
T TIGR00540 101 AKAEKLIAKNADHAAEP---VLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVD 177 (409)
T ss_pred HHHHHHHHHHhhcCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 66666666666666542 2234555666667777777777777766 556654 344445667777777777777777
Q ss_pred HHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCC-Cch-hhHHHHHHHHHHHhhhhhcccchhHHHH
Q psy8160 109 LCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLP-VHL-KADICRQLGWMYHCIDTLGEKSHRETLA 186 (324)
Q Consensus 109 ~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~A 186 (324)
+.+...|.+. .++..++.++...|++++|++.+.+..+....+ ... ........+.+- .+..+++
T Consensus 178 ~l~~~~P~~~----~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~---------~~~~~~~ 244 (409)
T TIGR00540 178 KLLEMAPRHK----EVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLD---------EAMADEG 244 (409)
T ss_pred HHHHhCCCCH----HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH---------HHHHhcC
Confidence 7776666655 566667777777777777777776666543111 111 011111111111 1123334
Q ss_pred HHHHHHHhhhCC----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH--HHhHHHHhhcCCCHHHHHHHH-
Q psy8160 187 IHCLQKSIEADP----KSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTW--CSIGNKDFSNNSNREDYHQAL- 259 (324)
Q Consensus 187 ~~~~~~al~~~~----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--~~lg~~~~~~~~~~~~A~~~~- 259 (324)
...+.++.+..| +++..+..+|..+...|++++|+..++++++..|++.... ..........++ ...+++.+
T Consensus 245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~-~~~~~~~~e 323 (409)
T TIGR00540 245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPED-NEKLEKLIE 323 (409)
T ss_pred HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCC-hHHHHHHHH
Confidence 444444444444 3556666666666666666666666666666666555321 112222222344 44444444
Q ss_pred ------------HHHHhhHHHHHHcCCCCcchHHHHHH--HhhhcCCChhhhhhchhhhccCChhhHHHHHHHHhh
Q psy8160 260 ------------NKYRDLGDFLVINNIPTSNNNRQCYN--SYSTSIASCKHINNNKDFSNNSNREDYHQALNKYRD 321 (324)
Q Consensus 260 ------------~~~~~lg~~~~~~~~~~~~~A~~~~~--~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 321 (324)
.....+|.++.+.|++++ |.++|+ ++++..|++.... .++.+. ...|+.++|.+.|++
T Consensus 324 ~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~--A~~~le~a~a~~~~p~~~~~~-~La~ll-~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 324 KQAKNVDDKPKCCINRALGQLLMKHGEFIE--AADAFKNVAACKEQLDANDLA-MAADAF-DQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHhCCCChhHHHHHHHHHHHHHcccHHH--HHHHHHHhHHhhcCCCHHHHH-HHHHHH-HHcCCHHHHHHHHHH
Confidence 122355666666666666 666666 4555556554433 343332 233445555554443
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2076|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.8e-16 Score=137.94 Aligned_cols=263 Identities=13% Similarity=0.162 Sum_probs=196.2
Q ss_pred HHHHHhhhhccccccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cC
Q psy8160 4 VIQKNLVEGIVTSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-ID 80 (324)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~ 80 (324)
++++.|...+..+..|..||.++-..+ ++++..+-.+--++|+ +.+.|..++....++|++++|.-||.+|| .+
T Consensus 161 i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~---d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~ 237 (895)
T KOG2076|consen 161 ILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK---DYELWKRLADLSEQLGNINQARYCYSRAIQAN 237 (895)
T ss_pred HHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC---ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 456777788889999999999877776 9999999999999986 44789999999999999999999999999 99
Q ss_pred CCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHH-HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCC------
Q psy8160 81 ASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKL-EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDD------ 153 (324)
Q Consensus 81 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~~------ 153 (324)
|.+.......+.+|..+|+...|...|.+++...|+...... +..+..++.+...++-+.|++.++.++....
T Consensus 238 p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~e 317 (895)
T KOG2076|consen 238 PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLE 317 (895)
T ss_pred CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccccccc
Confidence 999999999999999999999999999999999885544222 2344446666666666777777777765300
Q ss_pred ----------------------------------------------------CCC----chh------------------
Q psy8160 154 ----------------------------------------------------LPV----HLK------------------ 159 (324)
Q Consensus 154 ----------------------------------------------------~~~----~~~------------------ 159 (324)
.|+ ++.
T Consensus 318 d~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e 397 (895)
T KOG2076|consen 318 DLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLE 397 (895)
T ss_pred HHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHH
Confidence 000 000
Q ss_pred ----------------hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCc-cHHHHHHHHHHHHHcCCHHHHHH
Q psy8160 160 ----------------ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPK-SGQSLYLLGRCFAAVGKVHDAFL 222 (324)
Q Consensus 160 ----------------~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~ 222 (324)
.+.+..++.++. ..+++.+|+.++..++...+. +...|+.+|.||..+|.++.|++
T Consensus 398 ~ll~~l~~~n~~~~d~~dL~~d~a~al~-------~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e 470 (895)
T KOG2076|consen 398 ALLHFLVEDNVWVSDDVDLYLDLADALT-------NIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIE 470 (895)
T ss_pred HHHHHHHHhcCChhhhHHHHHHHHHHHH-------hcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHH
Confidence 112222222222 245778888888887766553 34678888888888888888888
Q ss_pred HHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH--------------------HHHHhhHHHHHHcCCCCc
Q psy8160 223 AYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL--------------------NKYRDLGDFLVINNIPTS 277 (324)
Q Consensus 223 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~--------------------~~~~~lg~~~~~~~~~~~ 277 (324)
+|++++...|++.++...|+.++.++|+ +++|++.+ ........++.+.|..++
T Consensus 471 ~y~kvl~~~p~~~D~Ri~Lasl~~~~g~-~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 471 FYEKVLILAPDNLDARITLASLYQQLGN-HEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHHHhcCCCchhhhhhHHHHHHhcCC-HHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 8888888888888888888888888888 88887777 344556666666665555
|
|
| >KOG0550|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.2e-17 Score=135.63 Aligned_cols=269 Identities=13% Similarity=0.073 Sum_probs=215.5
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTL 109 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 109 (324)
..|+..|..+++..|+. +..|...+.++...++|+.|....++.+ ++|.........+.++...++..+|.+.++.
T Consensus 66 ~nal~~yt~Ai~~~pd~---a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~ 142 (486)
T KOG0550|consen 66 GNALKNYTFAIDMCPDN---ASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKS 142 (486)
T ss_pred HHHHHHHHHHHHhCccc---hhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhhh
Confidence 88999999999999873 5678899999999999999999999999 9999999888888888888877777755542
Q ss_pred HH--------H----hcCCCc--ccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhh
Q psy8160 110 CL--------I----DASPCT--FTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDT 175 (324)
Q Consensus 110 ~l--------~----~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~ 175 (324)
.- . ..|... +.-......-+.|+...|++++|.+.--.++.++ +.+ +++++..|.+++.
T Consensus 143 ~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld--~~n--~~al~vrg~~~yy--- 215 (486)
T KOG0550|consen 143 KQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD--ATN--AEALYVRGLCLYY--- 215 (486)
T ss_pred hhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc--cch--hHHHHhccccccc---
Confidence 11 0 001111 0001233445889999999999999999999998 776 4588888888866
Q ss_pred hcccchhHHHHHHHHHHHhhhCCccH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC----HHHHH
Q psy8160 176 LGEKSHRETLAIHCLQKSIEADPKSG------------QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN----ADTWC 239 (324)
Q Consensus 176 ~~~~~~~~~~A~~~~~~al~~~~~~~------------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~ 239 (324)
..+.+.|+..|++++.++|+.. ..|-.-|.-.+..|++.+|.+.|..+|.++|++ +..+.
T Consensus 216 ----~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~ 291 (486)
T KOG0550|consen 216 ----NDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYG 291 (486)
T ss_pred ----ccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHH
Confidence 4489999999999999999875 457778999999999999999999999999987 45688
Q ss_pred HhHHHHhhcCCCHHHHHHHH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhh----h
Q psy8160 240 SIGNKDFSNNSNREDYHQAL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDF----S 304 (324)
Q Consensus 240 ~lg~~~~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~----~ 304 (324)
+++.+...+|+ ..+|+... .++...|.++...+++++ |++.|++|++...+ +.++..+.. +
T Consensus 292 nra~v~~rLgr-l~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~--AV~d~~~a~q~~~s-~e~r~~l~~A~~aL 367 (486)
T KOG0550|consen 292 NRALVNIRLGR-LREAISDCNEALKIDSSYIKALLRRANCHLALEKWEE--AVEDYEKAMQLEKD-CEIRRTLREAQLAL 367 (486)
T ss_pred HhHhhhcccCC-chhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhccc-cchHHHHHHHHHHH
Confidence 89999999999 99999887 788899999999999999 99999999998876 444444432 2
Q ss_pred ccCChhhHHHHHH
Q psy8160 305 NNSNREDYHQALN 317 (324)
Q Consensus 305 ~~~~~~~~~~a~~ 317 (324)
...+|+++.+-+.
T Consensus 368 kkSkRkd~ykilG 380 (486)
T KOG0550|consen 368 KKSKRKDWYKILG 380 (486)
T ss_pred HHhhhhhHHHHhh
Confidence 2255666655443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.1e-16 Score=134.77 Aligned_cols=105 Identities=11% Similarity=0.119 Sum_probs=65.9
Q ss_pred chhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 180 SHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
.|+.++|...++++++. |.++......+.+ ..++.+++++..++.++.+|+++..+..+|.++...++ |++|.++|
T Consensus 276 ~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~-~~~A~~~l 351 (398)
T PRK10747 276 CDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGE-WQEASLAF 351 (398)
T ss_pred CCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC-HHHHHHHH
Confidence 33666666666666663 3344443333333 33666666666666666677777666667777777776 77766666
Q ss_pred ----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhc
Q psy8160 260 ----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTS 290 (324)
Q Consensus 260 ----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~ 290 (324)
..+..++.++.+.|+.++ |.++|++++.+
T Consensus 352 e~al~~~P~~~~~~~La~~~~~~g~~~~--A~~~~~~~l~~ 390 (398)
T PRK10747 352 RAALKQRPDAYDYAWLADALDRLHKPEE--AAAMRRDGLML 390 (398)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCHHH--HHHHHHHHHhh
Confidence 445666666666666666 77777666654
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.4e-15 Score=132.73 Aligned_cols=254 Identities=7% Similarity=-0.078 Sum_probs=202.9
Q ss_pred hHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhccc
Q psy8160 23 QQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNE 99 (324)
Q Consensus 23 ~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~ 99 (324)
+.+....+ +.|.+++.++.+..|+.. ..+....+.++...|+++.|...+++.+ ..|++..+...++.++...|+
T Consensus 125 A~aa~~~g~~~~A~~~l~~a~~~~p~~~--l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d 202 (409)
T TIGR00540 125 AEAAQQRGDEARANQHLEEAAELAGNDN--ILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGA 202 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCcCc--hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Confidence 44444434 999999999999888632 2345666999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCch--hhHHHHHHHHHHHhhhhhc
Q psy8160 100 YDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHL--KADICRQLGWMYHCIDTLG 177 (324)
Q Consensus 100 ~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~l~~~~~~~~~~~ 177 (324)
+++|++.+.+..+....+......+......-....+..+++.+.+..+.... |... ....+..++..+..
T Consensus 203 ~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~--p~~~~~~~~l~~~~a~~l~~----- 275 (409)
T TIGR00540 203 WQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQ--PRHRRHNIALKIALAEHLID----- 275 (409)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHC--CHHHhCCHHHHHHHHHHHHH-----
Confidence 99999999999877544432111222233333345556667777898888877 6421 25588888888866
Q ss_pred ccchhHHHHHHHHHHHhhhCCccHHHH--HHHHHHHHHcCCHHHHHHHHHHHHccCCCCH--HHHHHhHHHHhhcCCCHH
Q psy8160 178 EKSHRETLAIHCLQKSIEADPKSGQSL--YLLGRCFAAVGKVHDAFLAYRNSVEKSEGNA--DTWCSIGNKDFSNNSNRE 253 (324)
Q Consensus 178 ~~~~~~~~A~~~~~~al~~~~~~~~~~--~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~~~~~~ 253 (324)
.|++++|+..++++++..|++.... ..........++.+.+++.++++++.+|+++ .....+|.++.+.|+ |+
T Consensus 276 --~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~-~~ 352 (409)
T TIGR00540 276 --CDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGE-FI 352 (409)
T ss_pred --CCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHccc-HH
Confidence 5599999999999999999988532 3334444556889999999999999999999 888999999999999 99
Q ss_pred HHHHHH------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhc
Q psy8160 254 DYHQAL------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTS 290 (324)
Q Consensus 254 ~A~~~~------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~ 290 (324)
+|.++| ..+..+|.++.+.|+.++ |.++|++++..
T Consensus 353 ~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~--A~~~~~~~l~~ 399 (409)
T TIGR00540 353 EAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAE--AAAMRQDSLGL 399 (409)
T ss_pred HHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHH
Confidence 999988 457799999999999999 99999998754
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.8e-15 Score=136.78 Aligned_cols=114 Identities=9% Similarity=0.021 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHH--HHHHHhcccHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLE--GLMFKVNNEYDSALKHLT 108 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~l--a~~~~~~~~~~~A~~~~~ 108 (324)
++|++.|+++++.+|+.+. .++ .+..++...|++++|+.++++++ +|.+......+ |.++...|++++|++.|+
T Consensus 51 ~~Al~~L~qaL~~~P~~~~--av~-dll~l~~~~G~~~~A~~~~eka~-~p~n~~~~~llalA~ly~~~gdyd~Aiely~ 126 (822)
T PRK14574 51 APVLDYLQEESKAGPLQSG--QVD-DWLQIAGWAGRDQEVIDVYERYQ-SSMNISSRGLASAARAYRNEKRWDQALALWQ 126 (822)
T ss_pred HHHHHHHHHHHhhCccchh--hHH-HHHHHHHHcCCcHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6666666666666665321 122 55555555566666666666666 33333333333 556666666666666666
Q ss_pred HHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC
Q psy8160 109 LCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKED 152 (324)
Q Consensus 109 ~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 152 (324)
+++...|.+. +++..++..+...++.++|++.++++...+
T Consensus 127 kaL~~dP~n~----~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d 166 (822)
T PRK14574 127 SSLKKDPTNP----DLISGMIMTQADAGRGGVVLKQATELAERD 166 (822)
T ss_pred HHHhhCCCCH----HHHHHHHHHHhhcCCHHHHHHHHHHhcccC
Confidence 6666655554 455555555556666666666666655555
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.5e-15 Score=138.45 Aligned_cols=255 Identities=11% Similarity=0.007 Sum_probs=196.3
Q ss_pred ccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHH
Q psy8160 48 LRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRF 126 (324)
Q Consensus 48 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 126 (324)
|..+...+..+.+.++.|+++.|+..|++++ .+|.+......+..++...|+.++|+.++++++...+... ....
T Consensus 31 p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~----~~ll 106 (822)
T PRK14574 31 PAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISS----RGLA 106 (822)
T ss_pred ccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCH----HHHH
Confidence 3355678999999999999999999999999 9999965444778888888999999999999993222222 4455
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHH
Q psy8160 127 HIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYL 206 (324)
Q Consensus 127 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 206 (324)
.+|.++...|++++|++.|+++++.+ |++ +.++..++.++.. .++.++|+..++++...+|.+... ..
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~d--P~n--~~~l~gLa~~y~~-------~~q~~eAl~~l~~l~~~dp~~~~~-l~ 174 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKD--PTN--PDLISGMIMTQAD-------AGRGGVVLKQATELAERDPTVQNY-MT 174 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC--CCC--HHHHHHHHHHHhh-------cCCHHHHHHHHHHhcccCcchHHH-HH
Confidence 56889999999999999999999999 988 4588888777755 448999999999999999985554 55
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH---------------------------
Q psy8160 207 LGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL--------------------------- 259 (324)
Q Consensus 207 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~--------------------------- 259 (324)
++.++...++..+|+..++++++.+|++.+++..+..+....|- ...|.+..
T Consensus 175 layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~-~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a 253 (822)
T PRK14574 175 LSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRI-VEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMA 253 (822)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-cHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhc
Confidence 66666667888779999999999999998777766666555555 44444333
Q ss_pred --------------------------------------------------------------------------HHHHhh
Q psy8160 260 --------------------------------------------------------------------------NKYRDL 265 (324)
Q Consensus 260 --------------------------------------------------------------------------~~~~~l 265 (324)
-+-.-.
T Consensus 254 ~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ 333 (822)
T PRK14574 254 VLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWA 333 (822)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHH
Confidence 234557
Q ss_pred HHHHHHcCCCCcchHHHHHHHhhhcCCC----hhhh--hhchhhhccCChhhHHHHHHHHhhc
Q psy8160 266 GDFLVINNIPTSNNNRQCYNSYSTSIAS----CKHI--NNNKDFSNNSNREDYHQALNKYRDL 322 (324)
Q Consensus 266 g~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~--~~~l~~~~~~~~~~~~~a~~~~~~~ 322 (324)
|..|...+++++ |+..|+.++.-.|. .+.. ...| +-..++.+.|++|..-..++
T Consensus 334 adayl~~~~P~k--A~~l~~~~~~~~~~~~~~~~~~~~~~~L-~yA~ld~e~~~~A~~~l~~~ 393 (822)
T PRK14574 334 ASAYIDRRLPEK--AAPILSSLYYSDGKTFRNSDDLLDADDL-YYSLNESEQLDKAYQFAVNY 393 (822)
T ss_pred HHHHHhcCCcHH--HHHHHHHHhhccccccCCCcchHHHHHH-HHHHHhcccHHHHHHHHHHH
Confidence 888999999999 99999999876642 1112 1222 22346788898888766543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.2e-15 Score=130.00 Aligned_cols=273 Identities=10% Similarity=-0.001 Sum_probs=199.6
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHH-HHHHHHhccHHHHHHHHHHHh-cCCCCchhhH-HHHHHHHhcccHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRL-GLMFKVNNEYDSALKHLTLCL-IDASPCTFTK-LEGLMFKVNNEYDSALKHL 107 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~l-g~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~-~la~~~~~~~~~~~A~~~~ 107 (324)
++|.+...+ .|+....+.+++-+ +......|+++.|..++.++. .+|++..... ..+.++...|++++|+..+
T Consensus 101 ~~A~k~l~~----~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 101 QQVEKLMTR----NADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred HHHHHHHHH----HHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 555544443 34322233455555 555599999999999999999 8888865543 4589999999999999999
Q ss_pred HHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHH
Q psy8160 108 TLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAI 187 (324)
Q Consensus 108 ~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~ 187 (324)
+++....|.+. .++..++.+|...|++++|++.+.++.+....++. ...-+...+++.......+ ..+.+...
T Consensus 177 ~~~~~~~P~~~----~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~~~a~~~l~~~~~~--~~~~~~l~ 249 (398)
T PRK10747 177 DKLLEVAPRHP----EVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLEQQAWIGLMDQAMA--DQGSEGLK 249 (398)
T ss_pred HHHHhcCCCCH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHHHHHHHHH--hcCHHHHH
Confidence 99999998887 88999999999999999999999998877632211 1111111121111000000 11334445
Q ss_pred HHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH--------
Q psy8160 188 HCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL-------- 259 (324)
Q Consensus 188 ~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-------- 259 (324)
..++..-...|+++.+...++..+...|+.++|...++++++. |.++......+.+ ..++ ++++++..
T Consensus 250 ~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~-~~~al~~~e~~lk~~P 325 (398)
T PRK10747 250 RWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNN-PEQLEKVLRQQIKQHG 325 (398)
T ss_pred HHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCC-hHHHHHHHHHHHhhCC
Confidence 5555555566789999999999999999999999999999994 5567665555554 3488 88888887
Q ss_pred ---HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHhhc
Q psy8160 260 ---NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYRDL 322 (324)
Q Consensus 260 ---~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 322 (324)
..+..+|.++...+++.+ |.++|+++++..|+++... .+..+ ....|+.++|...|++.
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~--A~~~le~al~~~P~~~~~~-~La~~-~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQE--ASLAFRAALKQRPDAYDYA-WLADA-LDRLHKPEEAAAMRRDG 387 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHH--HHHHHHHHHhcCCCHHHHH-HHHHH-HHHcCCHHHHHHHHHHH
Confidence 678899999999999999 9999999999999987633 23333 24568888888888753
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-15 Score=124.60 Aligned_cols=184 Identities=10% Similarity=0.039 Sum_probs=145.8
Q ss_pred CCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCc---hhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCccc
Q psy8160 45 PSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPC---TFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFT 120 (324)
Q Consensus 45 p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 120 (324)
|..+...+.++.+|..+...|++++|+..|++++ .+|.+. .++..+|.++...|++++|+..|++++...|.+...
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 4445567899999999999999999999999999 888775 466889999999999999999999999998876532
Q ss_pred HHHHHHHHHHHHHHh--------hcHHHHHHHHHHHHhcCCCCCchhh-HHHHHHHHHHHhhhhhcccchhHHHHHHHHH
Q psy8160 121 KLEVRFHIAHLHEVQ--------RKYKTAKDSYEQLLKEDDLPVHLKA-DICRQLGWMYHCIDTLGEKSHRETLAIHCLQ 191 (324)
Q Consensus 121 ~~~~~~~la~~~~~~--------~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~ 191 (324)
..+++.+|.++... |++++|++.|++++..+ |++..+ .++..+++... .
T Consensus 107 -~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~~~~--------------~----- 164 (235)
T TIGR03302 107 -DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDYLRN--------------R----- 164 (235)
T ss_pred -HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHHHH--------------H-----
Confidence 34788999999876 89999999999999998 876431 12222222110 0
Q ss_pred HHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 192 KSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN---ADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 192 ~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
.......+|.+++..|++.+|+..|++++...|++ +.+|+.+|.++...|+ +++|+.++
T Consensus 165 --------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~-~~~A~~~~ 226 (235)
T TIGR03302 165 --------LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGL-KDLAQDAA 226 (235)
T ss_pred --------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence 11223578888889999999999999998887654 5788899999999999 99888876
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0548|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-15 Score=130.37 Aligned_cols=225 Identities=11% Similarity=0.109 Sum_probs=161.2
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcc---cHHHHHHHH
Q psy8160 53 VHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTF---TKLEVRFHI 128 (324)
Q Consensus 53 ~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~---~~~~~~~~l 128 (324)
-.-.+|...+...+++.|++++..++ ++ .+.......+.++...|.+.+.+.....++........ ....+...+
T Consensus 226 ~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 226 KEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 35678999999999999999999999 88 88888888999999999999999988888765433221 112234446
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHH
Q psy8160 129 AHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLG 208 (324)
Q Consensus 129 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg 208 (324)
|..+...++++.|+.+|.+++.....|+. ... ....++++.......-.+|.-..--..-|
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~-----ls~--------------lk~~Ek~~k~~e~~a~~~pe~A~e~r~kG 365 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDL-----LSK--------------LKEAEKALKEAERKAYINPEKAEEEREKG 365 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHH-----HHH--------------HHHHHHHHHHHHHHHhhChhHHHHHHHHH
Confidence 77888899999999999999876643322 111 12455555555555556665555555557
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH-----------HHHHhhHHHHHHcCCCCc
Q psy8160 209 RCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL-----------NKYRDLGDFLVINNIPTS 277 (324)
Q Consensus 209 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~ 277 (324)
..++..|+|..|+..|.+++..+|+++.++.++|.||..++. +..|+... .+|+.-|.++..+.+|++
T Consensus 366 ne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~-~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydk 444 (539)
T KOG0548|consen 366 NEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGE-YPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDK 444 (539)
T ss_pred HHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhh-HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777 77776654 666666777777777777
Q ss_pred chHHHHHHHhhhcCCChhhhhhc
Q psy8160 278 NNNRQCYNSYSTSIASCKHINNN 300 (324)
Q Consensus 278 ~~A~~~~~~al~~~p~~~~~~~~ 300 (324)
|++.|+++++++|++..+...
T Consensus 445 --Aleay~eale~dp~~~e~~~~ 465 (539)
T KOG0548|consen 445 --ALEAYQEALELDPSNAEAIDG 465 (539)
T ss_pred --HHHHHHHHHhcCchhHHHHHH
Confidence 777777777777776655443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-15 Score=114.39 Aligned_cols=127 Identities=16% Similarity=0.099 Sum_probs=113.9
Q ss_pred HHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhH
Q psy8160 104 LKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRE 183 (324)
Q Consensus 104 ~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 183 (324)
...+++++..+|. .++.+|..+...|++++|+..|++++..+ |.+ ..++..+|.++.. .|++
T Consensus 13 ~~~~~~al~~~p~-------~~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~--~~a~~~lg~~~~~-------~g~~ 74 (144)
T PRK15359 13 EDILKQLLSVDPE-------TVYASGYASWQEGDYSRAVIDFSWLVMAQ--PWS--WRAHIALAGTWMM-------LKEY 74 (144)
T ss_pred HHHHHHHHHcCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCc--HHHHHHHHHHHHH-------HhhH
Confidence 4566777777654 35678999999999999999999999999 888 5599999999977 5599
Q ss_pred HHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhc
Q psy8160 184 TLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSN 248 (324)
Q Consensus 184 ~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 248 (324)
++|+..|++++.++|.++.+++.+|.++...|++++|+..|++++...|+++..|.++|.+....
T Consensus 75 ~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 75 TTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999886643
|
|
| >KOG0495|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.7e-14 Score=123.91 Aligned_cols=249 Identities=14% Similarity=0.024 Sum_probs=166.8
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTL 109 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 109 (324)
+.-...+++++...|. +...+.-.+..+...||...|...+..++ -+|++...+...-.+.....+++.|...+.+
T Consensus 567 Esl~Allqkav~~~pk---ae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llak 643 (913)
T KOG0495|consen 567 ESLEALLQKAVEQCPK---AEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAK 643 (913)
T ss_pred HHHHHHHHHHHHhCCc---chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 4444455666666553 33345555566666666666776666666 6666666666655666666666666666666
Q ss_pred HHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHH
Q psy8160 110 CLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHC 189 (324)
Q Consensus 110 ~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~ 189 (324)
+....+.. .+|+.-+.+...+++.++|+..++++++.. |.... .|..+|.++.+ .++.+.|...
T Consensus 644 ar~~sgTe-----Rv~mKs~~~er~ld~~eeA~rllEe~lk~f--p~f~K--l~lmlGQi~e~-------~~~ie~aR~a 707 (913)
T KOG0495|consen 644 ARSISGTE-----RVWMKSANLERYLDNVEEALRLLEEALKSF--PDFHK--LWLMLGQIEEQ-------MENIEMAREA 707 (913)
T ss_pred HhccCCcc-----hhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--CchHH--HHHHHhHHHHH-------HHHHHHHHHH
Confidence 65433332 456666666666677777777777777766 66533 66777777655 2366667777
Q ss_pred HHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH----------
Q psy8160 190 LQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL---------- 259 (324)
Q Consensus 190 ~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~---------- 259 (324)
|...+...|.++..|..|+.+-...|+.-.|...+.++.-.+|+++..|...-..-.+.|. .++|....
T Consensus 708 Y~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn-~~~a~~lmakALQecp~s 786 (913)
T KOG0495|consen 708 YLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGN-KEQAELLMAKALQECPSS 786 (913)
T ss_pred HHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCcc
Confidence 7777777777777777777766666667777777777777777777766666666666666 55554333
Q ss_pred -------------------------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhch
Q psy8160 260 -------------------------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNK 301 (324)
Q Consensus 260 -------------------------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 301 (324)
.++..+|.++....+++. |.+.|.++++.+|++-.++..+
T Consensus 787 g~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~k--ar~Wf~Ravk~d~d~GD~wa~f 857 (913)
T KOG0495|consen 787 GLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEK--AREWFERAVKKDPDNGDAWAWF 857 (913)
T ss_pred chhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHH--HHHHHHHHHccCCccchHHHHH
Confidence 778889999999999999 9999999999999987665543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.70 E-value=5e-15 Score=121.22 Aligned_cols=189 Identities=10% Similarity=-0.007 Sum_probs=146.9
Q ss_pred CCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchh-
Q psy8160 81 ASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK- 159 (324)
Q Consensus 81 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~- 159 (324)
+.....+..+|..+...|++++|+..+++++...|.+.. ...+++.+|.++...|++++|+..|++++... |++..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~ 106 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPY-AEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDA 106 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchh-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCch
Confidence 344556677899999999999999999999998887642 23678999999999999999999999999998 76543
Q ss_pred hHHHHHHHHHHHhhh-hhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q psy8160 160 ADICRQLGWMYHCID-TLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTW 238 (324)
Q Consensus 160 ~~~~~~l~~~~~~~~-~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 238 (324)
..+++.+|.++.... ......+++++|+..+++++..+|.+...+..+..+.... .. .....
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~----~~-------------~~~~~ 169 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLR----NR-------------LAGKE 169 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH----HH-------------HHHHH
Confidence 347889999986520 0001135899999999999999999876654333221111 11 11234
Q ss_pred HHhHHHHhhcCCCHHHHHHHH--------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCC
Q psy8160 239 CSIGNKDFSNNSNREDYHQAL--------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIA 292 (324)
Q Consensus 239 ~~lg~~~~~~~~~~~~A~~~~--------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p 292 (324)
..+|.++...|+ +.+|+..| ++++.+|.++...|++++ |+.+++......|
T Consensus 170 ~~~a~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~--A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGA-YVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDL--AQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCC-hHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHH--HHHHHHHHHhhCC
Confidence 588999999999 99999988 688999999999999999 9999888776655
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1840|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-14 Score=127.57 Aligned_cols=221 Identities=15% Similarity=0.086 Sum_probs=175.3
Q ss_pred HHHHHHHHHHhccC--C---CcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-c--------CCCCchhhHHHHHHHHh
Q psy8160 31 IKAIKTFQQLLYVD--P---SYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-I--------DASPCTFTKLEGLMFKV 96 (324)
Q Consensus 31 ~~A~~~~~~~l~~~--p---~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~--------~~~~~~~~~~la~~~~~ 96 (324)
++|+..|.++++.- . +.+.-......+|.+|..++++.+|+..|++++ + +|.-+.+...||.+|..
T Consensus 216 e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~ 295 (508)
T KOG1840|consen 216 EKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYK 295 (508)
T ss_pred HHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Confidence 99999999999981 0 112223344569999999999999999999998 4 34555666779999999
Q ss_pred cccHHHHHHHHHHHHHhcCC----CcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCC---CCCc-hhhHHHHHHHH
Q psy8160 97 NNEYDSALKHLTLCLIDASP----CTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDD---LPVH-LKADICRQLGW 168 (324)
Q Consensus 97 ~~~~~~A~~~~~~~l~~~~~----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~---~~~~-~~~~~~~~l~~ 168 (324)
+|++++|..++++++..... +.......+..++.++...+++++|+.++++++++.. .+.+ ..+.+..++|+
T Consensus 296 ~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~ 375 (508)
T KOG1840|consen 296 QGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAE 375 (508)
T ss_pred cCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Confidence 99999999999999765332 2223445678889999999999999999999987631 1333 23779999999
Q ss_pred HHHhhhhhcccchhHHHHHHHHHHHhhhC--------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-------CCC
Q psy8160 169 MYHCIDTLGEKSHRETLAIHCLQKSIEAD--------PKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEK-------SEG 233 (324)
Q Consensus 169 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-------~p~ 233 (324)
+|+. +|++++|.+.++++++.. +.....+..+|..|.+.+++.+|...|.++..+ .|+
T Consensus 376 l~~~-------~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~ 448 (508)
T KOG1840|consen 376 LYLK-------MGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPD 448 (508)
T ss_pred HHHH-------hcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCc
Confidence 9988 559999999999998764 223467788999999999999999999888764 344
Q ss_pred CHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 234 NADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 234 ~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
....+.+||.+|..+|+ +++|++..
T Consensus 449 ~~~~~~nL~~~Y~~~g~-~e~a~~~~ 473 (508)
T KOG1840|consen 449 VTYTYLNLAALYRAQGN-YEAAEELE 473 (508)
T ss_pred hHHHHHHHHHHHHHccc-HHHHHHHH
Confidence 45678899999999999 99998875
|
|
| >KOG4162|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-13 Score=122.05 Aligned_cols=282 Identities=15% Similarity=0.042 Sum_probs=217.4
Q ss_pred HHHHHHHHHHhccCC--CcccchHHHHHHHHHHHHh-----------ccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHh
Q psy8160 31 IKAIKTFQQLLYVDP--SYLRANEVHLRLGLMFKVN-----------NEYDSALKHLTLCL-IDASPCTFTKLEGLMFKV 96 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p--~~~~~~~~~~~lg~~~~~~-----------~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~ 96 (324)
++++.+-.++++.-. .....+.++.-+|.+|-.+ ..-.+++..+++++ .+|+|..+.+.++.-|..
T Consensus 411 eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~ 490 (799)
T KOG4162|consen 411 EEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAE 490 (799)
T ss_pred hhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 888888888887331 1122355788888888532 22457999999999 999999999999999999
Q ss_pred cccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchh-----------------
Q psy8160 97 NNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK----------------- 159 (324)
Q Consensus 97 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~----------------- 159 (324)
+++.+.|....++++..++... ..+|..++.++...+++..|+.....++... |.+..
T Consensus 491 ~R~l~sAl~~~~eaL~l~~~~~---~~~whLLALvlSa~kr~~~Al~vvd~al~E~--~~N~~l~~~~~~i~~~~~~~e~ 565 (799)
T KOG4162|consen 491 QRQLTSALDYAREALALNRGDS---AKAWHLLALVLSAQKRLKEALDVVDAALEEF--GDNHVLMDGKIHIELTFNDREE 565 (799)
T ss_pred HHhHHHHHHHHHHHHHhcCCcc---HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh--hhhhhhchhhhhhhhhcccHHH
Confidence 9999999999999999866554 4789999999999999999999999998876 44211
Q ss_pred -hHHHHHHHHHHH----------h------hhhhcccchhHHHHHHHHHHHhhh--------C-----C--------cc-
Q psy8160 160 -ADICRQLGWMYH----------C------IDTLGEKSHRETLAIHCLQKSIEA--------D-----P--------KS- 200 (324)
Q Consensus 160 -~~~~~~l~~~~~----------~------~~~~~~~~~~~~~A~~~~~~al~~--------~-----~--------~~- 200 (324)
-+++..+-.++. + ....+....+..+|+...+++... . | ..
T Consensus 566 ~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~ 645 (799)
T KOG4162|consen 566 ALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSL 645 (799)
T ss_pred HHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCch
Confidence 011111111111 0 000111122333444444444321 0 1 11
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH-----------HHHHhh
Q psy8160 201 ----GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL-----------NKYRDL 265 (324)
Q Consensus 201 ----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-----------~~~~~l 265 (324)
...|...|..+...++.++|..++.++-.++|..+..|+..|.++...|+ +.+|..+| .+...+
T Consensus 646 ~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~-~~EA~~af~~Al~ldP~hv~s~~Al 724 (799)
T KOG4162|consen 646 WYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQ-LEEAKEAFLVALALDPDHVPSMTAL 724 (799)
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHh-hHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 15678889999999999999999999999999999999999999999999 99999999 778899
Q ss_pred HHHHHHcCCCCcchHHH--HHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHhh
Q psy8160 266 GDFLVINNIPTSNNNRQ--CYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYRD 321 (324)
Q Consensus 266 g~~~~~~~~~~~~~A~~--~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 321 (324)
|.++.+.|+..- |.+ ....++++||.|+.+|..++.+. ..+|+.++|.++|.-
T Consensus 725 a~~lle~G~~~l--a~~~~~L~dalr~dp~n~eaW~~LG~v~-k~~Gd~~~Aaecf~a 779 (799)
T KOG4162|consen 725 AELLLELGSPRL--AEKRSLLSDALRLDPLNHEAWYYLGEVF-KKLGDSKQAAECFQA 779 (799)
T ss_pred HHHHHHhCCcch--HHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHccchHHHHHHHHH
Confidence 999999999888 777 99999999999999999999874 578999999999863
|
|
| >KOG0550|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.5e-15 Score=124.53 Aligned_cols=255 Identities=12% Similarity=0.093 Sum_probs=205.6
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Q psy8160 53 VHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHL 131 (324)
Q Consensus 53 ~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~ 131 (324)
-....|..++...+|..|++.+..|| ..|++...+...+.+++..|+|++|+-..++.+...+... ..+...+.|
T Consensus 51 ~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~----k~~~r~~~c 126 (486)
T KOG0550|consen 51 EAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFS----KGQLREGQC 126 (486)
T ss_pred HHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCcc----ccccchhhh
Confidence 45678888999999999999999999 9999999999999999999999999999999988877766 456677888
Q ss_pred HHHhhcHHHHHHHHHHHH---hcCC-------CCCchh----hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhC
Q psy8160 132 HEVQRKYKTAKDSYEQLL---KEDD-------LPVHLK----ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEAD 197 (324)
Q Consensus 132 ~~~~~~~~~A~~~~~~al---~~~~-------~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 197 (324)
+...++..+|.+.++..- ..+. .|.+.+ ..+-..-+.|+.. .+++++|+..--..++++
T Consensus 127 ~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~-------~~~~~~a~~ea~~ilkld 199 (486)
T KOG0550|consen 127 HLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAF-------LGDYDEAQSEAIDILKLD 199 (486)
T ss_pred hhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhh-------cccchhHHHHHHHHHhcc
Confidence 888888888776655221 0000 011111 0122222333322 448999999999999999
Q ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH------------HHHHHhHHHHhhcCCCHHHHHHHH------
Q psy8160 198 PKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNA------------DTWCSIGNKDFSNNSNREDYHQAL------ 259 (324)
Q Consensus 198 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~------------~~~~~lg~~~~~~~~~~~~A~~~~------ 259 (324)
+.+.++++..|.++...++.+.|+..|++++.++|++. ..|..-|.-.++.|. +..|-++|
T Consensus 200 ~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~-y~~A~E~Yteal~i 278 (486)
T KOG0550|consen 200 ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGN-YRKAYECYTEALNI 278 (486)
T ss_pred cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccc-hhHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999984 457778999999999 99999999
Q ss_pred ---------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHhhc
Q psy8160 260 ---------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYRDL 322 (324)
Q Consensus 260 ---------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 322 (324)
..|.+.+.+....|+..+ |+.....|+++||+........+. +....+++.+|.+.|++.
T Consensus 279 dP~n~~~naklY~nra~v~~rLgrl~e--aisdc~~Al~iD~syikall~ra~-c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 279 DPSNKKTNAKLYGNRALVNIRLGRLRE--AISDCNEALKIDSSYIKALLRRAN-CHLALEKWEEAVEDYEKA 347 (486)
T ss_pred CccccchhHHHHHHhHhhhcccCCchh--hhhhhhhhhhcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 678999999999999999 999999999999987665544432 345678888888887653
|
|
| >KOG1130|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.4e-16 Score=129.73 Aligned_cols=250 Identities=18% Similarity=0.129 Sum_probs=187.8
Q ss_pred HHHHHHHHHHhccCCCc-ccchHHHHHHHHHHHHhccHHHHHHHHHHHh-c------CCCCchhhHHHHHHHHhcccHHH
Q psy8160 31 IKAIKTFQQLLYVDPSY-LRANEVHLRLGLMFKVNNEYDSALKHLTLCL-I------DASPCTFTKLEGLMFKVNNEYDS 102 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~------~~~~~~~~~~la~~~~~~~~~~~ 102 (324)
...+..|+.+++.-.+. .--+.+|..||..|+..+||++|+++-..-+ + .-.-....-.+|+++...|.|++
T Consensus 34 raGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fde 113 (639)
T KOG1130|consen 34 RAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDE 113 (639)
T ss_pred hhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccch
Confidence 67888999999887642 2235589999999999999999999865433 2 22334445568999999999999
Q ss_pred HHHHHHHHHHhc--CCCcccHHHHHHHHHHHHHHhhc--------------------HHHHHHHHHHHHhcCCCCCc--h
Q psy8160 103 ALKHLTLCLIDA--SPCTFTKLEVRFHIAHLHEVQRK--------------------YKTAKDSYEQLLKEDDLPVH--L 158 (324)
Q Consensus 103 A~~~~~~~l~~~--~~~~~~~~~~~~~la~~~~~~~~--------------------~~~A~~~~~~al~~~~~~~~--~ 158 (324)
|+.++.+-+... ..+......+++++|.+|...|+ ++.|++.|..-++......+ .
T Consensus 114 A~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~a 193 (639)
T KOG1130|consen 114 ALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLA 193 (639)
T ss_pred HHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHh
Confidence 999998876542 22333456789999999987764 33445555544443210111 0
Q ss_pred hhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH------HHHHHHHHHHHHcCCHHHHHHHHHHHHcc--
Q psy8160 159 KADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG------QSLYLLGRCFAAVGKVHDAFLAYRNSVEK-- 230 (324)
Q Consensus 159 ~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~~~lg~~~~~~~~~~~A~~~~~~al~~-- 230 (324)
...++-++|..|+. .|++++|+.+-+.-+.+..... .++.++|.++...|+++.|+++|.+.+.+
T Consensus 194 qGRa~GnLGNTyYl-------LGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAi 266 (639)
T KOG1130|consen 194 QGRAYGNLGNTYYL-------LGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAI 266 (639)
T ss_pred hcchhcccCceeee-------eccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHH
Confidence 13366667777766 5699999999888777654332 68899999999999999999999987654
Q ss_pred --CCC--CHHHHHHhHHHHhhcCCCHHHHHHHH-----------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhh
Q psy8160 231 --SEG--NADTWCSIGNKDFSNNSNREDYHQAL-----------------NKYRDLGDFLVINNIPTSNNNRQCYNSYST 289 (324)
Q Consensus 231 --~p~--~~~~~~~lg~~~~~~~~~~~~A~~~~-----------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~ 289 (324)
... .+...+.||..|.-..+ +++||.++ .+++.||..|...|..++ |+.+.+++++
T Consensus 267 elg~r~vEAQscYSLgNtytll~e-~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~k--Al~fae~hl~ 343 (639)
T KOG1130|consen 267 ELGNRTVEAQSCYSLGNTYTLLKE-VQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRK--ALYFAELHLR 343 (639)
T ss_pred HhcchhHHHHHHHHhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHH--HHHHHHHHHH
Confidence 222 35567899999999999 99999998 788999999999999999 9999888876
Q ss_pred c
Q psy8160 290 S 290 (324)
Q Consensus 290 ~ 290 (324)
.
T Consensus 344 ~ 344 (639)
T KOG1130|consen 344 S 344 (639)
T ss_pred H
Confidence 4
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.4e-14 Score=121.20 Aligned_cols=245 Identities=13% Similarity=-0.023 Sum_probs=175.0
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTL 109 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 109 (324)
+.+...+.++....|......+..+-.|.++...|++++|...+++++ .+|++...... +..+...|++..+.....+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~ 101 (355)
T cd05804 23 PAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVAR 101 (355)
T ss_pred chHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHH
Confidence 777889999998888655556677888999999999999999999999 99999876664 5455555544444444444
Q ss_pred HHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHH
Q psy8160 110 CLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHC 189 (324)
Q Consensus 110 ~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~ 189 (324)
++....+...........+|.++...|++++|+..+++++..+ |++ ..++..+|.+++. .|++++|+.+
T Consensus 102 ~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p~~--~~~~~~la~i~~~-------~g~~~eA~~~ 170 (355)
T cd05804 102 VLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--PDD--AWAVHAVAHVLEM-------QGRFKEGIAF 170 (355)
T ss_pred HHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCC--cHHHHHHHHHHHH-------cCCHHHHHHH
Confidence 4433222223334667788999999999999999999999999 887 4488899999977 5599999999
Q ss_pred HHHHhhhCCccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH-HHHH----HhHHHHhhcCC-----CHHHH
Q psy8160 190 LQKSIEADPKSG----QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNA-DTWC----SIGNKDFSNNS-----NREDY 255 (324)
Q Consensus 190 ~~~al~~~~~~~----~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~----~lg~~~~~~~~-----~~~~A 255 (324)
+++++...|.++ ..|..+|.++...|++++|+..|++++...|... .... .+...+...|. .++..
T Consensus 171 l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~ 250 (355)
T cd05804 171 MESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDL 250 (355)
T ss_pred HHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHH
Confidence 999999887543 3566899999999999999999999987766221 1111 11122222331 02222
Q ss_pred HHHH----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhh
Q psy8160 256 HQAL----------NKYRDLGDFLVINNIPTSNNNRQCYNSYST 289 (324)
Q Consensus 256 ~~~~----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~ 289 (324)
.... ......+.++...|+..+ |....+....
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--a~~~L~~l~~ 292 (355)
T cd05804 251 ADYAAWHFPDHGLAFNDLHAALALAGAGDKDA--LDKLLAALKG 292 (355)
T ss_pred HHHHHhhcCcccchHHHHHHHHHHhcCCCHHH--HHHHHHHHHH
Confidence 2211 111246666777888888 8888876654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1127|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.9e-15 Score=132.89 Aligned_cols=186 Identities=16% Similarity=0.136 Sum_probs=158.5
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTL 109 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 109 (324)
..|+..|-++++++|++. .++..||.+|...-|...|.++|++|. +||++..+....+.+|....+.+.|......
T Consensus 475 ~~al~ali~alrld~~~a---paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 475 ALALHALIRALRLDVSLA---PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHhcccchh---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 789999999999998753 378999999999999999999999999 9999999999999999999999999997544
Q ss_pred HHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHH
Q psy8160 110 CLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHC 189 (324)
Q Consensus 110 ~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~ 189 (324)
+-+..|.. .....|.++|-.|...+++..|+..|+.++..+ |.+.. .|..+|.+|.. .|++..|++.
T Consensus 552 ~~qka~a~--~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d--PkD~n--~W~gLGeAY~~-------sGry~~AlKv 618 (1238)
T KOG1127|consen 552 AAQKAPAF--ACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD--PKDYN--LWLGLGEAYPE-------SGRYSHALKV 618 (1238)
T ss_pred HhhhchHH--HHHhhhhhccccccCccchhhHHHHHHHHhcCC--chhHH--HHHHHHHHHHh-------cCceehHHHh
Confidence 43333322 233567778999999999999999999999999 98855 99999999966 4589999999
Q ss_pred HHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q psy8160 190 LQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSE 232 (324)
Q Consensus 190 ~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 232 (324)
|.++..++|.+....+-.+.+...+|+|.+|+..+...+....
T Consensus 619 F~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s 661 (1238)
T KOG1127|consen 619 FTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFS 661 (1238)
T ss_pred hhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 9999999999998888899999999999998888877775443
|
|
| >KOG0495|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.4e-13 Score=117.98 Aligned_cols=247 Identities=11% Similarity=0.033 Sum_probs=215.8
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTL 109 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 109 (324)
+=|...|..+|+..|. ...+|...+..-...|..++-...|++++ .-|.....+...+..+...|+...|...+.+
T Consensus 533 ~carAVya~alqvfp~---k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~ 609 (913)
T KOG0495|consen 533 ECARAVYAHALQVFPC---KKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQ 609 (913)
T ss_pred HHHHHHHHHHHhhccc---hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 5578889999999875 33478888888788899999999999999 8899888898889999999999999999999
Q ss_pred HHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHH
Q psy8160 110 CLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHC 189 (324)
Q Consensus 110 ~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~ 189 (324)
++..+|.+. ++|+.--.+.....+++.|...|.++-... |. ..+|+.-+.+... .++.++|+.+
T Consensus 610 af~~~pnse----eiwlaavKle~en~e~eraR~llakar~~s--gT---eRv~mKs~~~er~-------ld~~eeA~rl 673 (913)
T KOG0495|consen 610 AFEANPNSE----EIWLAAVKLEFENDELERARDLLAKARSIS--GT---ERVWMKSANLERY-------LDNVEEALRL 673 (913)
T ss_pred HHHhCCCcH----HHHHHHHHHhhccccHHHHHHHHHHHhccC--Cc---chhhHHHhHHHHH-------hhhHHHHHHH
Confidence 999988876 888888888889999999999999998776 44 3377777766665 4589999999
Q ss_pred HHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH----------
Q psy8160 190 LQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL---------- 259 (324)
Q Consensus 190 ~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~---------- 259 (324)
++++++..|.....|..+|+++..+++.+.|...|...++..|..+..|..++.+-...|+ ...|...+
T Consensus 674 lEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~-~~rAR~ildrarlkNPk~ 752 (913)
T KOG0495|consen 674 LEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQ-LVRARSILDRARLKNPKN 752 (913)
T ss_pred HHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcc-hhhHHHHHHHHHhcCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999988
Q ss_pred -HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhh
Q psy8160 260 -NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINN 299 (324)
Q Consensus 260 -~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 299 (324)
..|...-.+-.+.|+.+. |.....+|++--|++...+.
T Consensus 753 ~~lwle~Ir~ElR~gn~~~--a~~lmakALQecp~sg~LWa 791 (913)
T KOG0495|consen 753 ALLWLESIRMELRAGNKEQ--AELLMAKALQECPSSGLLWA 791 (913)
T ss_pred chhHHHHHHHHHHcCCHHH--HHHHHHHHHHhCCccchhHH
Confidence 667777777788899999 99999999999888765443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.6e-14 Score=123.50 Aligned_cols=198 Identities=12% Similarity=0.076 Sum_probs=148.8
Q ss_pred CCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCc---hhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcc
Q psy8160 44 DPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPC---TFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTF 119 (324)
Q Consensus 44 ~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~ 119 (324)
+|++ ..+|..+|.++...++.+.+.+.+.++. ..|.+. ......+.++...|++++|...+++++...|.+.
T Consensus 2 dp~~---~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~- 77 (355)
T cd05804 2 DPDF---ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL- 77 (355)
T ss_pred CCcc---HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH-
Confidence 5654 5578999999999999999888888887 665443 3455568888899999999999999998887765
Q ss_pred cHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC--CCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhC
Q psy8160 120 TKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKED--DLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEAD 197 (324)
Q Consensus 120 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 197 (324)
.++.. +..+...|++..+.....+++... ..|.. ......+|.++.. .|++++|+..++++++..
T Consensus 78 ---~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~a~~~~~-------~G~~~~A~~~~~~al~~~ 144 (355)
T cd05804 78 ---LALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDY--WYLLGMLAFGLEE-------AGQYDRAEEAARRALELN 144 (355)
T ss_pred ---HHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCc--HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHhhC
Confidence 34443 545555554444444444444321 11433 3366677777765 458999999999999999
Q ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH----HHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 198 PKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNA----DTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 198 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
|+++.++..+|.++...|++++|+.++++++...|.++ ..|..+|.++...|+ +++|+..|
T Consensus 145 p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~-~~~A~~~~ 209 (355)
T cd05804 145 PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGD-YEAALAIY 209 (355)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCC-HHHHHHHH
Confidence 99999999999999999999999999999998877543 346678999999999 99998888
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-14 Score=108.82 Aligned_cols=123 Identities=13% Similarity=0.105 Sum_probs=112.5
Q ss_pred HHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHH
Q psy8160 34 IKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLI 112 (324)
Q Consensus 34 ~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~ 112 (324)
...|+++++++|+. ++.+|.++...|++++|+.+|++++ .+|.+..++..+|.++...|++++|+..|++++.
T Consensus 13 ~~~~~~al~~~p~~------~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLSVDPET------VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHcCHHH------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 46889999999862 5678999999999999999999999 9999999999999999999999999999999999
Q ss_pred hcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHH
Q psy8160 113 DASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMY 170 (324)
Q Consensus 113 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~ 170 (324)
..|... .+++++|.++...|++++|+..|++++... |++.. .+..+|.+.
T Consensus 87 l~p~~~----~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~--p~~~~--~~~~~~~~~ 136 (144)
T PRK15359 87 LDASHP----EPVYQTGVCLKMMGEPGLAREAFQTAIKMS--YADAS--WSEIRQNAQ 136 (144)
T ss_pred cCCCCc----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChH--HHHHHHHHH
Confidence 999887 899999999999999999999999999999 88844 666666655
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.6e-12 Score=125.35 Aligned_cols=238 Identities=9% Similarity=-0.060 Sum_probs=115.9
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCC-CCchhhHHHHHHHHhcccHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDA-SPCTFTKLEGLMFKVNNEYDSALKHLT 108 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~ 108 (324)
+.|.+.|.++.+.... .+...+..+-..|.+.|+++.|.+.|++.. ... .+...+..+...|...|++++|++.|+
T Consensus 454 e~A~~lf~~M~~~Gl~--pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~ 531 (1060)
T PLN03218 454 DGALRVLRLVQEAGLK--ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYG 531 (1060)
T ss_pred HHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 5566666655554322 123345555555666666666666666555 321 234444455555566666666666665
Q ss_pred HHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc-CC-CCCchhhHHHHHHHHHHHhhhhhcccchhHHHH
Q psy8160 109 LCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKE-DD-LPVHLKADICRQLGWMYHCIDTLGEKSHRETLA 186 (324)
Q Consensus 109 ~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A 186 (324)
.......... ...+..+...+...|++++|.+.|.+.... .+ .|+ ..++..+...|.. .|++++|
T Consensus 532 ~M~~~Gv~PD---~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD---~vTynaLI~ay~k-------~G~ldeA 598 (1060)
T PLN03218 532 IMRSKNVKPD---RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD---HITVGALMKACAN-------AGQVDRA 598 (1060)
T ss_pred HHHHcCCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc---HHHHHHHHHHHHH-------CCCHHHH
Confidence 5543321111 234555555555555566666555555432 11 122 2244444444433 2255555
Q ss_pred HHHHHHHhhhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc--CCCCHHHHHHhHHHHhhcCCCHHHHHHHH----
Q psy8160 187 IHCLQKSIEAD-PKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEK--SEGNADTWCSIGNKDFSNNSNREDYHQAL---- 259 (324)
Q Consensus 187 ~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~A~~~~---- 259 (324)
...|++..+.. +.+...|..+...|...|++++|+..|.+.... .| +..+|..+...|.+.|+ +++|.+.+
T Consensus 599 ~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~-~eeA~~l~~eM~ 676 (1060)
T PLN03218 599 KEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGD-LDKAFEILQDAR 676 (1060)
T ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCC-HHHHHHHHHHHH
Confidence 55555554443 233444555555555555555555555554433 22 23344444555555555 55555444
Q ss_pred --------HHHHhhHHHHHHcCCCCcchHHHHHHHh
Q psy8160 260 --------NKYRDLGDFLVINNIPTSNNNRQCYNSY 287 (324)
Q Consensus 260 --------~~~~~lg~~~~~~~~~~~~~A~~~~~~a 287 (324)
.+|..+...|.+.|++++ |.+.|++.
T Consensus 677 k~G~~pd~~tynsLI~ay~k~G~~ee--A~~lf~eM 710 (1060)
T PLN03218 677 KQGIKLGTVSYSSLMGACSNAKNWKK--ALELYEDI 710 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHhCCCHHH--HHHHHHHH
Confidence 344445555555555555 55555544
|
|
| >KOG1174|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.8e-13 Score=111.81 Aligned_cols=246 Identities=12% Similarity=0.073 Sum_probs=153.0
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Q psy8160 55 LRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHE 133 (324)
Q Consensus 55 ~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~ 133 (324)
...+.|+-...-+..+..++-.-. .-|+|......+|.++...|++++|+-.|+++...+|... ...-..|.++.
T Consensus 202 ka~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i----~~MD~Ya~LL~ 277 (564)
T KOG1174|consen 202 KALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNV----EAMDLYAVLLG 277 (564)
T ss_pred HHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhh----hhHHHHHHHHH
Confidence 445666665666666677776666 7789999999999999999999999999999987777654 33333444455
Q ss_pred HhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHH
Q psy8160 134 VQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAA 213 (324)
Q Consensus 134 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 213 (324)
..|+++.--......+... ... +.-|+--+.+.+. .+++..|+.+-+++++.+|.+..++...|..+..
T Consensus 278 ~eg~~e~~~~L~~~Lf~~~--~~t--a~~wfV~~~~l~~-------~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 278 QEGGCEQDSALMDYLFAKV--KYT--ASHWFVHAQLLYD-------EKKFERALNFVEKCIDSEPRNHEALILKGRLLIA 346 (564)
T ss_pred hccCHhhHHHHHHHHHhhh--hcc--hhhhhhhhhhhhh-------hhhHHHHHHHHHHHhccCcccchHHHhccHHHHh
Confidence 5555554444444443333 111 2233333333322 2256666666666666666666666666666666
Q ss_pred cCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHH------------------------------------
Q psy8160 214 VGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQ------------------------------------ 257 (324)
Q Consensus 214 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~------------------------------------ 257 (324)
+|+.++|+..|+.|..+.|..-+.|-.|-.+|...|. +.+|.-
T Consensus 347 ~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~-~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKk 425 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKR-FKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKK 425 (564)
T ss_pred ccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhch-HHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHH
Confidence 6666666666666666666666666666666666666 655543
Q ss_pred HH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHh
Q psy8160 258 AL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYR 320 (324)
Q Consensus 258 ~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~ 320 (324)
.+ .+-..++.+....|.+.+ ++..+++++...|++. .+..|+... ...+.+.+|++.|.
T Consensus 426 f~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D--~i~LLe~~L~~~~D~~-LH~~Lgd~~-~A~Ne~Q~am~~y~ 495 (564)
T KOG1174|consen 426 FAEKSLKINPIYTPAVNLIAELCQVEGPTKD--IIKLLEKHLIIFPDVN-LHNHLGDIM-RAQNEPQKAMEYYY 495 (564)
T ss_pred HHHhhhccCCccHHHHHHHHHHHHhhCccch--HHHHHHHHHhhccccH-HHHHHHHHH-HHhhhHHHHHHHHH
Confidence 22 444567777777888888 8888888888777643 444455432 34566777776664
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-13 Score=108.30 Aligned_cols=156 Identities=12% Similarity=0.087 Sum_probs=128.0
Q ss_pred HHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhc
Q psy8160 58 GLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRK 137 (324)
Q Consensus 58 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~ 137 (324)
+..|+..|+++......++.. +|.. -+...++.++++..+++++..+|.+. +.|..+|.++...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~-~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~----~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLA-DPLH---------QFASQQTPEAQLQALQDKIRANPQNS----EQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHh-Cccc---------cccCchhHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHCCC
Confidence 346778888887655554322 2221 11125678899999999999999887 899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHH-Hhhhhhcccchh--HHHHHHHHHHHhhhCCccHHHHHHHHHHHHHc
Q psy8160 138 YKTAKDSYEQLLKEDDLPVHLKADICRQLGWMY-HCIDTLGEKSHR--ETLAIHCLQKSIEADPKSGQSLYLLGRCFAAV 214 (324)
Q Consensus 138 ~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~--~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 214 (324)
+++|+.+|++++..+ |++ +.++..+|.++ .. .|+ +++|...++++++.+|+++.+++.+|.+++..
T Consensus 89 ~~~A~~a~~~Al~l~--P~~--~~~~~~lA~aL~~~-------~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~ 157 (198)
T PRK10370 89 YDNALLAYRQALQLR--GEN--AELYAALATVLYYQ-------AGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQ 157 (198)
T ss_pred HHHHHHHHHHHHHhC--CCC--HHHHHHHHHHHHHh-------cCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHc
Confidence 999999999999999 888 55999999875 33 224 68999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHccCCCCHHHH
Q psy8160 215 GKVHDAFLAYRNSVEKSEGNADTW 238 (324)
Q Consensus 215 ~~~~~A~~~~~~al~~~p~~~~~~ 238 (324)
|++++|+..|+++++..|.+.+-.
T Consensus 158 g~~~~Ai~~~~~aL~l~~~~~~r~ 181 (198)
T PRK10370 158 ADYAQAIELWQKVLDLNSPRVNRT 181 (198)
T ss_pred CCHHHHHHHHHHHHhhCCCCccHH
Confidence 999999999999999998765443
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.6e-12 Score=121.14 Aligned_cols=267 Identities=13% Similarity=0.054 Sum_probs=208.1
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cC-CCCchhhHHHHHHHHhcccHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-ID-ASPCTFTKLEGLMFKVNNEYDSALKHLT 108 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 108 (324)
++|...|..... |+ ...+..+-..+...|+++.|...|..+. .. +.+...+..+-..|...|+.++|.+.|+
T Consensus 423 ~eAl~lf~~M~~--pd----~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~ 496 (1060)
T PLN03218 423 KEAFRFAKLIRN--PT----LSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFH 496 (1060)
T ss_pred HHHHHHHHHcCC--CC----HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 667776665543 32 3456677778889999999999999988 44 3345667778889999999999999999
Q ss_pred HHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHH
Q psy8160 109 LCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIH 188 (324)
Q Consensus 109 ~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~ 188 (324)
+......... ...|..+...|...|++++|+..|+......-.|+ ..++..+...+.+ .++.++|..
T Consensus 497 eM~~~Gv~Pd---vvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD---~vTYnsLI~a~~k-------~G~~deA~~ 563 (1060)
T PLN03218 497 EMVNAGVEAN---VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD---RVVFNALISACGQ-------SGAVDRAFD 563 (1060)
T ss_pred HHHHcCCCCC---HHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHH-------CCCHHHHHH
Confidence 9876543221 36788888999999999999999999877654455 3478888777765 458999999
Q ss_pred HHHHHhhh----CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC-CCCHHHHHHhHHHHhhcCCCHHHHHHHH----
Q psy8160 189 CLQKSIEA----DPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKS-EGNADTWCSIGNKDFSNNSNREDYHQAL---- 259 (324)
Q Consensus 189 ~~~~al~~----~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~A~~~~---- 259 (324)
.+.+.... .| +...|..+-..|...|++++|++.|+...+.+ +.++..|..+...|.+.|+ +++|+..|
T Consensus 564 lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~-~deAl~lf~eM~ 641 (1060)
T PLN03218 564 VLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGD-WDFALSIYDDMK 641 (1060)
T ss_pred HHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC-HHHHHHHHHHHH
Confidence 99998753 44 45678888889999999999999999998876 4578899999999999999 99999999
Q ss_pred --------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcC--CChhhhhhchhhhccCChhhHHHHHHHHhhc
Q psy8160 260 --------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSI--ASCKHINNNKDFSNNSNREDYHQALNKYRDL 322 (324)
Q Consensus 260 --------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 322 (324)
.+|..+...|.+.|++++ |.+.+....+.. |+ ....+.+-.. ....+++++|+.-|+++
T Consensus 642 ~~Gv~PD~~TynsLI~a~~k~G~~ee--A~~l~~eM~k~G~~pd-~~tynsLI~a-y~k~G~~eeA~~lf~eM 710 (1060)
T PLN03218 642 KKGVKPDEVFFSALVDVAGHAGDLDK--AFEILQDARKQGIKLG-TVSYSSLMGA-CSNAKNWKKALELYEDI 710 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHhCCCHHH--HHHHHHHHHHcCCCCC-HHHHHHHHHH-HHhCCCHHHHHHHHHHH
Confidence 578889999999999999 999999998753 43 3333333222 24567777777777654
|
|
| >KOG0548|consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.1e-13 Score=114.54 Aligned_cols=201 Identities=13% Similarity=0.153 Sum_probs=116.7
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCch-------hhHHHHHHHHhcccHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCT-------FTKLEGLMFKVNNEYDS 102 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~-------~~~~la~~~~~~~~~~~ 102 (324)
..|++.|.+++.++ . +...+...+-+|+..|.+...+.....++ ....... ....+|..+...++++.
T Consensus 241 ~~a~q~y~~a~el~-~---~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ 316 (539)
T KOG0548|consen 241 ETAIQHYAKALELA-T---DITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEG 316 (539)
T ss_pred HHHHHHHHHHHhHh-h---hhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHH
Confidence 88999999999999 3 34457778888888888888887777766 3211111 11125668888899999
Q ss_pred HHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchh
Q psy8160 103 ALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHR 182 (324)
Q Consensus 103 A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 182 (324)
++..|++++..... ..+.......++++.......-.+ |.- +.-....|..++. .++
T Consensus 317 ai~~~~kaLte~Rt------------~~~ls~lk~~Ek~~k~~e~~a~~~--pe~--A~e~r~kGne~Fk-------~gd 373 (539)
T KOG0548|consen 317 AIKYYQKALTEHRT------------PDLLSKLKEAEKALKEAERKAYIN--PEK--AEEEREKGNEAFK-------KGD 373 (539)
T ss_pred HHHHHHHHhhhhcC------------HHHHHHHHHHHHHHHHHHHHHhhC--hhH--HHHHHHHHHHHHh-------ccC
Confidence 99999998754222 233333444444444444333333 322 2233333444433 335
Q ss_pred HHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 183 ETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 183 ~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
|..|+..|.+++..+|+++..|.+.|.||...|.+..|+...+++++++|+....|.+-|.++..+.+ |++|+++|
T Consensus 374 y~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~-ydkAleay 449 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKE-YDKALEAY 449 (539)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555 55555555
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-12 Score=122.55 Aligned_cols=265 Identities=9% Similarity=-0.038 Sum_probs=203.1
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cC-CCCchhhHHHHHHHHhcccHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-ID-ASPCTFTKLEGLMFKVNNEYDSALKHLT 108 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 108 (324)
++|.+.|+..... +...|..+...|...|++++|++.|++.. .. .-+...+..+...+...|++++|.+.+.
T Consensus 276 ~~A~~vf~~m~~~------~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~ 349 (697)
T PLN03081 276 EDARCVFDGMPEK------TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHA 349 (697)
T ss_pred HHHHHHHHhCCCC------ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHH
Confidence 8888888776322 34478888889999999999999998887 32 2234456667778888899999999998
Q ss_pred HHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHH
Q psy8160 109 LCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIH 188 (324)
Q Consensus 109 ~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~ 188 (324)
.++....... ..++..+...|...|+.++|...|++....+ ..+|..+...|.. .|+.++|+.
T Consensus 350 ~m~~~g~~~d---~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d-------~~t~n~lI~~y~~-------~G~~~~A~~ 412 (697)
T PLN03081 350 GLIRTGFPLD---IVANTALVDLYSKWGRMEDARNVFDRMPRKN-------LISWNALIAGYGN-------HGRGTKAVE 412 (697)
T ss_pred HHHHhCCCCC---eeehHHHHHHHHHCCCHHHHHHHHHhCCCCC-------eeeHHHHHHHHHH-------cCCHHHHHH
Confidence 8887643222 2467778888999999999999998865322 3378888877765 458999999
Q ss_pred HHHHHhhhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC--CHHHHHHhHHHHhhcCCCHHHHHHHH------
Q psy8160 189 CLQKSIEAD-PKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEG--NADTWCSIGNKDFSNNSNREDYHQAL------ 259 (324)
Q Consensus 189 ~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~~~A~~~~------ 259 (324)
.|++..+.. ..+..++..+-..+...|..++|...|+...+..+- +...|..+..++.+.|+ +++|.+.+
T Consensus 413 lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~-~~eA~~~~~~~~~~ 491 (697)
T PLN03081 413 MFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGL-LDEAYAMIRRAPFK 491 (697)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCC-HHHHHHHHHHCCCC
Confidence 999987643 224566777778889999999999999998754322 34578889999999999 99999998
Q ss_pred ---HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHhhc
Q psy8160 260 ---NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYRDL 322 (324)
Q Consensus 260 ---~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 322 (324)
.+|..|...+...|+.+. |...+++.+++.|++......+... ....|++++|.+-++.|
T Consensus 492 p~~~~~~~Ll~a~~~~g~~~~--a~~~~~~l~~~~p~~~~~y~~L~~~-y~~~G~~~~A~~v~~~m 554 (697)
T PLN03081 492 PTVNMWAALLTACRIHKNLEL--GRLAAEKLYGMGPEKLNNYVVLLNL-YNSSGRQAEAAKVVETL 554 (697)
T ss_pred CCHHHHHHHHHHHHHcCCcHH--HHHHHHHHhCCCCCCCcchHHHHHH-HHhCCCHHHHHHHHHHH
Confidence 779999999999999999 9999999999999877655544432 24557788777766654
|
|
| >KOG1156|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.5e-13 Score=115.76 Aligned_cols=232 Identities=13% Similarity=0.092 Sum_probs=199.7
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Q psy8160 53 VHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHL 131 (324)
Q Consensus 53 ~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~ 131 (324)
.+|.-+.-.+..++|.+.++..+.++ ..|..+...-..|..+...|+-++|......++..++.+. ..|..+|.+
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~----vCwHv~gl~ 84 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSH----VCWHVLGLL 84 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccc----hhHHHHHHH
Confidence 56777777788999999999999999 9999999999999999999999999999999998777766 678899999
Q ss_pred HHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHH
Q psy8160 132 HEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCF 211 (324)
Q Consensus 132 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~ 211 (324)
+...++|++|+.+|+.|+.+. |++.. +++-++.+..+ +++++-....-.+.+++.|.....|...+..+
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~~--~dN~q--ilrDlslLQ~Q-------mRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~ 153 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKIE--KDNLQ--ILRDLSLLQIQ-------MRDYEGYLETRNQLLQLRPSQRASWIGFAVAQ 153 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhcC--CCcHH--HHHHHHHHHHH-------HHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 999999999999999999999 98855 99999988866 44888899999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHccC---CCC-----HHHHHHhHHHHhhcCCCHHHHHHHH-----------HHHHhhHHHHHHc
Q psy8160 212 AAVGKVHDAFLAYRNSVEKS---EGN-----ADTWCSIGNKDFSNNSNREDYHQAL-----------NKYRDLGDFLVIN 272 (324)
Q Consensus 212 ~~~~~~~~A~~~~~~al~~~---p~~-----~~~~~~lg~~~~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~ 272 (324)
...|++..|....+...+.. |.. .+.......+....|. +++|++.+ ..-..-|.++.+.
T Consensus 154 ~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~-~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl 232 (700)
T KOG1156|consen 154 HLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGS-LQKALEHLLDNEKQIVDKLAFEETKADLLMKL 232 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHccc-HHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHH
Confidence 99999999998887776654 322 3445556677788899 99999988 3345678899999
Q ss_pred CCCCcchHHHHHHHhhhcCCChhhhhhchh
Q psy8160 273 NIPTSNNNRQCYNSYSTSIASCKHINNNKD 302 (324)
Q Consensus 273 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 302 (324)
+++++ |+..|...+..+|++......+.
T Consensus 233 ~~lEe--A~~~y~~Ll~rnPdn~~Yy~~l~ 260 (700)
T KOG1156|consen 233 GQLEE--AVKVYRRLLERNPDNLDYYEGLE 260 (700)
T ss_pred hhHHh--HHHHHHHHHhhCchhHHHHHHHH
Confidence 99999 99999999999999876555443
|
|
| >KOG1127|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-13 Score=125.03 Aligned_cols=212 Identities=15% Similarity=0.110 Sum_probs=182.4
Q ss_pred HhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHH
Q psy8160 63 VNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTA 141 (324)
Q Consensus 63 ~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 141 (324)
.+.+...|+..|-+++ +||+...++-.+|.+|+..-+...|.++|++++..++... ++.-.++..|....+++.|
T Consensus 470 ~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatda----eaaaa~adtyae~~~we~a 545 (1238)
T KOG1127|consen 470 MRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDA----EAAAASADTYAEESTWEEA 545 (1238)
T ss_pred hhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhh----hhHHHHHHHhhccccHHHH
Confidence 3456889999999999 9999999999999999999999999999999998887765 7788899999999999999
Q ss_pred HHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHH
Q psy8160 142 KDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAF 221 (324)
Q Consensus 142 ~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~ 221 (324)
..+...+-+.. |-......|.++|-.|.. .++..+|+..|+.+++.+|.+.+.|..+|.+|...|++..|+
T Consensus 546 ~~I~l~~~qka--~a~~~k~nW~~rG~yyLe-------a~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~Al 616 (1238)
T KOG1127|consen 546 FEICLRAAQKA--PAFACKENWVQRGPYYLE-------AHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHAL 616 (1238)
T ss_pred HHHHHHHhhhc--hHHHHHhhhhhccccccC-------ccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHH
Confidence 99866666666 544334577778877765 458889999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH------------------HHHHhhHHHHHHcCCCCcchHHHH
Q psy8160 222 LAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL------------------NKYRDLGDFLVINNIPTSNNNRQC 283 (324)
Q Consensus 222 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~------------------~~~~~lg~~~~~~~~~~~~~A~~~ 283 (324)
+.|.+|..++|.+.-..+-.+......|. |.+|+..+ +++...+..+...|-... |.++
T Consensus 617 KvF~kAs~LrP~s~y~~fk~A~~ecd~Gk-Ykeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~k--avd~ 693 (1238)
T KOG1127|consen 617 KVFTKASLLRPLSKYGRFKEAVMECDNGK-YKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKK--AVDF 693 (1238)
T ss_pred HhhhhhHhcCcHhHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhh--hhHH
Confidence 99999999999999999999999999999 99999988 455555555666666677 7777
Q ss_pred HHHhhhc
Q psy8160 284 YNSYSTS 290 (324)
Q Consensus 284 ~~~al~~ 290 (324)
++++++.
T Consensus 694 ~eksie~ 700 (1238)
T KOG1127|consen 694 FEKSIES 700 (1238)
T ss_pred HHHHHHH
Confidence 7776654
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.7e-12 Score=114.38 Aligned_cols=249 Identities=9% Similarity=-0.013 Sum_probs=185.1
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcc-----cHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNN-----EYDSAL 104 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~-----~~~~A~ 104 (324)
++|++.+...-..-++ ...+.-..|.++..+|++++|...|+..| .+|++...+..+..+..... +.+.-.
T Consensus 21 ~~AL~~L~~~~~~I~D---k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~ 97 (517)
T PF12569_consen 21 EEALEHLEKNEKQILD---KLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLL 97 (517)
T ss_pred HHHHHHHHhhhhhCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHH
Confidence 8899998887766655 34577889999999999999999999999 99999999998887774332 567778
Q ss_pred HHHHHHHHhcCCCcccH--------HH--------------------HHHHHHHHHHHhhcHHHHHHHHHHHHh---cCC
Q psy8160 105 KHLTLCLIDASPCTFTK--------LE--------------------VRFHIAHLHEVQRKYKTAKDSYEQLLK---EDD 153 (324)
Q Consensus 105 ~~~~~~l~~~~~~~~~~--------~~--------------------~~~~la~~~~~~~~~~~A~~~~~~al~---~~~ 153 (324)
..|++.....|.+...+ .+ ++..+-.+|.......-..+.+..... ..+
T Consensus 98 ~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~ 177 (517)
T PF12569_consen 98 ELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNG 177 (517)
T ss_pred HHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccC
Confidence 88888777666543211 11 122222222211111111112222111 110
Q ss_pred ----------CCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHH
Q psy8160 154 ----------LPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLA 223 (324)
Q Consensus 154 ----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~ 223 (324)
.|+.....+++.++..|.. .|++++|+.+.+++|+..|..++.++..|.++-..|++.+|..+
T Consensus 178 ~~~~~~~~~~~~p~~~lw~~~~lAqhyd~-------~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~ 250 (517)
T PF12569_consen 178 SFSNGDDEEKEPPSTLLWTLYFLAQHYDY-------LGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEA 250 (517)
T ss_pred CCCCccccccCCchHHHHHHHHHHHHHHH-------hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 0111112355777777744 45999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH------------------HHHH--hhHHHHHHcCCCCcchHHHH
Q psy8160 224 YRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL------------------NKYR--DLGDFLVINNIPTSNNNRQC 283 (324)
Q Consensus 224 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~------------------~~~~--~lg~~~~~~~~~~~~~A~~~ 283 (324)
++.|..+|+.+--.....+..+.+.|+ .++|.+.+ -+|+ ..|.+|.+.|++.. |++.
T Consensus 251 ~~~Ar~LD~~DRyiNsK~aKy~LRa~~-~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~--ALk~ 327 (517)
T PF12569_consen 251 MDEARELDLADRYINSKCAKYLLRAGR-IEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL--ALKR 327 (517)
T ss_pred HHHHHhCChhhHHHHHHHHHHHHHCCC-HHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH--HHHH
Confidence 999999999998888899999999999 99999887 4665 45889999999999 9999
Q ss_pred HHHhhhcCC
Q psy8160 284 YNSYSTSIA 292 (324)
Q Consensus 284 ~~~al~~~p 292 (324)
|..+.+..-
T Consensus 328 ~~~v~k~f~ 336 (517)
T PF12569_consen 328 FHAVLKHFD 336 (517)
T ss_pred HHHHHHHHH
Confidence 998887643
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG3060|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.2e-12 Score=99.24 Aligned_cols=204 Identities=14% Similarity=0.064 Sum_probs=164.5
Q ss_pred HHHHHHHHHHhccCCCcccc---hHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRA---NEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKH 106 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~ 106 (324)
++-++.+..++.-.+...-. ..++-.+.......|+.+-|..|+++.. .-|...+...+.|..+...|.+++|++.
T Consensus 29 eevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~ 108 (289)
T KOG3060|consen 29 EEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEY 108 (289)
T ss_pred HHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHH
Confidence 66666666666554432111 2244455666678899999999999988 7799999999999999999999999999
Q ss_pred HHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHH
Q psy8160 107 LTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLA 186 (324)
Q Consensus 107 ~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A 186 (324)
|+..+..+|.+. .++-.---+...+|+..+|++.+...++.. +.+ .++|..++.+|.. .+++++|
T Consensus 109 y~~lL~ddpt~~----v~~KRKlAilka~GK~l~aIk~ln~YL~~F--~~D--~EAW~eLaeiY~~-------~~~f~kA 173 (289)
T KOG3060|consen 109 YESLLEDDPTDT----VIRKRKLAILKAQGKNLEAIKELNEYLDKF--MND--QEAWHELAEIYLS-------EGDFEKA 173 (289)
T ss_pred HHHHhccCcchh----HHHHHHHHHHHHcCCcHHHHHHHHHHHHHh--cCc--HHHHHHHHHHHHh-------HhHHHHH
Confidence 999999887776 344444455677888889999999999999 888 5599999999977 5599999
Q ss_pred HHHHHHHhhhCCccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcC
Q psy8160 187 IHCLQKSIEADPKSGQSLYLLGRCFAAVG---KVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNN 249 (324)
Q Consensus 187 ~~~~~~al~~~~~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 249 (324)
..|+++.+=..|.++.....+|.+++-+| +...|.++|.++++++|.+..+|+.+-.|....-
T Consensus 174 ~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la 239 (289)
T KOG3060|consen 174 AFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALA 239 (289)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHH
Confidence 99999999999999998888998888776 5667999999999999999888888766654433
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.8e-14 Score=109.47 Aligned_cols=111 Identities=14% Similarity=0.215 Sum_probs=104.4
Q ss_pred hHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHH-hhcCCCH--HHHHHH
Q psy8160 182 RETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKD-FSNNSNR--EDYHQA 258 (324)
Q Consensus 182 ~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~~~~~--~~A~~~ 258 (324)
+.++++..++++++.+|++++.|..+|.++...|++++|+..|++++.++|++++++..+|.++ ...|+ + ++|+..
T Consensus 54 ~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~-~~~~~A~~~ 132 (198)
T PRK10370 54 TPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQ-HMTPQTREM 132 (198)
T ss_pred hHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC-CCcHHHHHH
Confidence 7788999999999999999999999999999999999999999999999999999999999975 67676 5 899988
Q ss_pred H-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChh
Q psy8160 259 L-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCK 295 (324)
Q Consensus 259 ~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (324)
+ .+++.+|..+...|++++ |+.+|+++++++|.+.
T Consensus 133 l~~al~~dP~~~~al~~LA~~~~~~g~~~~--Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 133 IDKALALDANEVTALMLLASDAFMQADYAQ--AIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHcCCHHH--HHHHHHHHHhhCCCCc
Confidence 8 899999999999999999 9999999999998754
|
|
| >KOG0553|consensus | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.9e-14 Score=112.86 Aligned_cols=113 Identities=12% Similarity=0.120 Sum_probs=97.7
Q ss_pred hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHH
Q psy8160 160 ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWC 239 (324)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 239 (324)
++.+..-|.-... .++|.+|+..|.+||+++|.++-.|++.+.+|..+|.++.|++.++.++.+||.+..+|.
T Consensus 81 AE~LK~eGN~~m~-------~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~ 153 (304)
T KOG0553|consen 81 AESLKNEGNKLMK-------NKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYG 153 (304)
T ss_pred HHHHHHHHHHHHH-------hhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHH
Confidence 4445555555544 559999999999999999999999999999999999999999999999999999998888
Q ss_pred HhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhc
Q psy8160 240 SIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSN 305 (324)
Q Consensus 240 ~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 305 (324)
.||.+|..+|+ +++ |++.|++||+++|+|+..+.+|....
T Consensus 154 RLG~A~~~~gk------------------------~~~--A~~aykKaLeldP~Ne~~K~nL~~Ae 193 (304)
T KOG0553|consen 154 RLGLAYLALGK------------------------YEE--AIEAYKKALELDPDNESYKSNLKIAE 193 (304)
T ss_pred HHHHHHHccCc------------------------HHH--HHHHHHhhhccCCCcHHHHHHHHHHH
Confidence 88888888777 666 88889999999999999998887653
|
|
| >KOG3060|consensus | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.2e-12 Score=100.79 Aligned_cols=174 Identities=15% Similarity=0.062 Sum_probs=141.1
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHH
Q psy8160 90 EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWM 169 (324)
Q Consensus 90 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~ 169 (324)
........|+.+-|..++++.-+..|.+. .+-..-|..+...|++++|+++|+..++.+ |.+.- ++.+.--+
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~----RV~~lkam~lEa~~~~~~A~e~y~~lL~dd--pt~~v--~~KRKlAi 129 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRFPGSK----RVGKLKAMLLEATGNYKEAIEYYESLLEDD--PTDTV--IRKRKLAI 129 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCCh----hHHHHHHHHHHHhhchhhHHHHHHHHhccC--cchhH--HHHHHHHH
Confidence 44455567899999999999888887776 566677899999999999999999999999 87632 44333223
Q ss_pred HHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcC
Q psy8160 170 YHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNN 249 (324)
Q Consensus 170 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 249 (324)
... +|+.-+||+.+..-++..+.++++|..++.+|+..|+|++|.-++++++-+.|.++..+-.+|.+++-.|
T Consensus 130 lka-------~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~g 202 (289)
T KOG3060|consen 130 LKA-------QGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQG 202 (289)
T ss_pred HHH-------cCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh
Confidence 322 3467789999999999999999999999999999999999999999999999999999999999988887
Q ss_pred CCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhch
Q psy8160 250 SNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNK 301 (324)
Q Consensus 250 ~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 301 (324)
. - .+..- |.++|.++++++|.+-.....+
T Consensus 203 g-~--------------------eN~~~--arkyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 203 G-A--------------------ENLEL--ARKYYERALKLNPKNLRALFGI 231 (289)
T ss_pred h-H--------------------HHHHH--HHHHHHHHHHhChHhHHHHHHH
Confidence 7 2 23556 8888888888888655544443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-12 Score=119.72 Aligned_cols=125 Identities=6% Similarity=0.021 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHH
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQ 202 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 202 (324)
++++.||.+....|.+++|...++.+++.. |++.. +...++.+..+ .+++++|+..+++++..+|+++.
T Consensus 87 ~~~~~La~i~~~~g~~~ea~~~l~~~~~~~--Pd~~~--a~~~~a~~L~~-------~~~~eeA~~~~~~~l~~~p~~~~ 155 (694)
T PRK15179 87 LFQVLVARALEAAHRSDEGLAVWRGIHQRF--PDSSE--AFILMLRGVKR-------QQGIEAGRAEIELYFSGGSSSAR 155 (694)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--CCcHH--HHHHHHHHHHH-------hccHHHHHHHHHHHhhcCCCCHH
Confidence 566666666666666666666666666666 66533 55555555544 33666666666666666666666
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 203 SLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 203 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
+++.+|.++...|++++|+..|++++..+|+++.+|.++|.++...|+ .++|...|
T Consensus 156 ~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~-~~~A~~~~ 211 (694)
T PRK15179 156 EILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGA-LWRARDVL 211 (694)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence 666666666666666666666666666666666666666666666666 55544444
|
|
| >KOG1156|consensus | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.8e-11 Score=106.08 Aligned_cols=130 Identities=21% Similarity=0.184 Sum_probs=109.2
Q ss_pred cccchhhhHhHHHHH-----HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHH
Q psy8160 16 SVRVPKLQQFGKTLN-----IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKL 89 (324)
Q Consensus 16 ~~~~~~l~~~~~~~~-----~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~ 89 (324)
|+....|+.-++.++ ++|.+.....++.++. ..-.|.-+|.++....+|++|+++|+.|+ ++|+|...+.-
T Consensus 38 ~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~---S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrD 114 (700)
T KOG1156|consen 38 PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK---SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRD 114 (700)
T ss_pred CccchhHHhccchhhcccchHHHHHHHHHHhccCcc---cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 334444455444444 9999999999998865 34478999999999999999999999999 99999999999
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC
Q psy8160 90 EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKED 152 (324)
Q Consensus 90 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 152 (324)
++.+-.+.++++.....-.+.+...|... ..|...+..+...|++..|....+......
T Consensus 115 lslLQ~QmRd~~~~~~tr~~LLql~~~~r----a~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 115 LSLLQIQMRDYEGYLETRNQLLQLRPSQR----ASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999888998887765 678999999999999999998877766544
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-11 Score=117.06 Aligned_cols=230 Identities=9% Similarity=-0.054 Sum_probs=144.5
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cC--CC-------------------------
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-ID--AS------------------------- 82 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~--~~------------------------- 82 (324)
++|.+.|++..+ | +...|..+...|.+.|++++|++.|++.. .. |+
T Consensus 175 ~~A~~lf~~m~~--~----~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~ 248 (697)
T PLN03081 175 IDARRLFDEMPE--R----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHC 248 (697)
T ss_pred HHHHHHHhcCCC--C----CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHH
Confidence 778887777643 2 22356777777788888888888888776 32 22
Q ss_pred ---------CchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCC
Q psy8160 83 ---------PCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDD 153 (324)
Q Consensus 83 ---------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 153 (324)
+...+..+...|...|+.++|.+.|++... .+ ..+|..+...|...|++++|++.|++.....-
T Consensus 249 ~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~~----~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~ 321 (697)
T PLN03081 249 CVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE---KT----TVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321 (697)
T ss_pred HHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC---CC----hhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 122233456677777888888887765531 12 25677777888888888888888887765543
Q ss_pred CCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q psy8160 154 LPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEAD-PKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSE 232 (324)
Q Consensus 154 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 232 (324)
.|+ ..++..+...+.. .+++++|...+..+++.. +.+..++..+...|.+.|++++|...|++..+
T Consensus 322 ~pd---~~t~~~ll~a~~~-------~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--- 388 (697)
T PLN03081 322 SID---QFTFSIMIRIFSR-------LALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--- 388 (697)
T ss_pred CCC---HHHHHHHHHHHHh-------ccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---
Confidence 343 2255555555543 336666776666666554 34455566666666677777777777666532
Q ss_pred CCHHHHHHhHHHHhhcCCCHHHHHHHH------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhh
Q psy8160 233 GNADTWCSIGNKDFSNNSNREDYHQAL------------NKYRDLGDFLVINNIPTSNNNRQCYNSYST 289 (324)
Q Consensus 233 ~~~~~~~~lg~~~~~~~~~~~~A~~~~------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~ 289 (324)
.+..+|..+...|.+.|+ .++|++.| .+|..+-..+.+.|..++ |.+.|+...+
T Consensus 389 ~d~~t~n~lI~~y~~~G~-~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~--a~~~f~~m~~ 454 (697)
T PLN03081 389 KNLISWNALIAGYGNHGR-GTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQ--GWEIFQSMSE 454 (697)
T ss_pred CCeeeHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHH--HHHHHHHHHH
Confidence 245566666666777777 77776666 344555555666666666 6666665543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.1e-13 Score=98.66 Aligned_cols=118 Identities=19% Similarity=0.166 Sum_probs=102.5
Q ss_pred HHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHH
Q psy8160 106 HLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETL 185 (324)
Q Consensus 106 ~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 185 (324)
.+++++...|.+. .+.+.+|.++...|++++|+..+++++..+ |.+ ..++..+|.++.. .+++++
T Consensus 5 ~~~~~l~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~--~~~~~~la~~~~~-------~~~~~~ 69 (135)
T TIGR02552 5 TLKDLLGLDSEQL----EQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYN--SRYWLGLAACCQM-------LKEYEE 69 (135)
T ss_pred hHHHHHcCChhhH----HHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCc--HHHHHHHHHHHHH-------HHHHHH
Confidence 4556776666654 678889999999999999999999999988 877 4599999999977 458999
Q ss_pred HHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q psy8160 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTW 238 (324)
Q Consensus 186 A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 238 (324)
|+..+++++..+|.++..++.+|.++...|++++|+..|+++++.+|++...+
T Consensus 70 A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 70 AIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 99999999999999999999999999999999999999999999999887754
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG0553|consensus | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.7e-13 Score=107.32 Aligned_cols=120 Identities=19% Similarity=0.217 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH
Q psy8160 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG 201 (324)
Q Consensus 122 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 201 (324)
++-+-.-|.-+...++|.+|+..|.+||.++ |.+ +..+.+.+-+|.+ +|.++.|++.++.++.++|...
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~--P~n--AVyycNRAAAy~~-------Lg~~~~AVkDce~Al~iDp~ys 149 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELD--PTN--AVYYCNRAAAYSK-------LGEYEDAVKDCESALSIDPHYS 149 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCc--chHHHHHHHHHHH-------hcchHHHHHHHHHHHhcChHHH
Confidence 3445556888889999999999999999999 988 6699999999977 5599999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHH
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNRE 253 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~ 253 (324)
.+|..||.+|..+|++.+|+..|+++++++|++...+.+|..+-.+.++ ..
T Consensus 150 kay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e-~~ 200 (304)
T KOG0553|consen 150 KAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE-PK 200 (304)
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC-CC
Confidence 9999999999999999999999999999999999999999999888887 55
|
|
| >KOG1128|consensus | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-12 Score=116.13 Aligned_cols=211 Identities=14% Similarity=0.072 Sum_probs=163.6
Q ss_pred ccchHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHH
Q psy8160 48 LRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFH 127 (324)
Q Consensus 48 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 127 (324)
|.-......+|..+...|-...|+..|++.- .+.....+|...|+..+|.....+-+. .++++ ..|..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle-------mw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~----~lyc~ 462 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE-------MWDPVILCYLLLGQHGKAEEINRQELE-KDPDP----RLYCL 462 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH-------HHHHHHHHHHHhcccchHHHHHHHHhc-CCCcc----hhHHH
Confidence 3344566788889999999999999998643 344457788888999999988888887 34443 56667
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHH
Q psy8160 128 IAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLL 207 (324)
Q Consensus 128 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 207 (324)
+|.+.....-|++|.+.++..- +.+.+.+|..... .++++++.++++..++++|-....|+.+
T Consensus 463 LGDv~~d~s~yEkawElsn~~s----------arA~r~~~~~~~~-------~~~fs~~~~hle~sl~~nplq~~~wf~~ 525 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYIS----------ARAQRSLALLILS-------NKDFSEADKHLERSLEINPLQLGTWFGL 525 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhh----------HHHHHhhcccccc-------chhHHHHHHHHHHHhhcCccchhHHHhc
Confidence 7777766666666666554432 3355555555544 3489999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH-----------HHHHhhHHHHHHcCCCC
Q psy8160 208 GRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL-----------NKYRDLGDFLVINNIPT 276 (324)
Q Consensus 208 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~ 276 (324)
|.+..+.++++.|.+.|..++.++|++.++|.+++..|...++ -.+|-..+ .+|-|.-.+-.+.|.++
T Consensus 526 G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~-k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~e 604 (777)
T KOG1128|consen 526 GCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKK-KKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFE 604 (777)
T ss_pred cHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhh-hHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHH
Confidence 9999999999999999999999999999999999999999998 77776666 67777777777888888
Q ss_pred cchHHHHHHHhhhc
Q psy8160 277 SNNNRQCYNSYSTS 290 (324)
Q Consensus 277 ~~~A~~~~~~al~~ 290 (324)
+ |++.|.+.+.+
T Consensus 605 d--a~~A~~rll~~ 616 (777)
T KOG1128|consen 605 D--AIKAYHRLLDL 616 (777)
T ss_pred H--HHHHHHHHHHh
Confidence 8 88888777654
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.9e-13 Score=101.81 Aligned_cols=109 Identities=13% Similarity=0.129 Sum_probs=102.7
Q ss_pred HHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH--------
Q psy8160 188 HCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL-------- 259 (324)
Q Consensus 188 ~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-------- 259 (324)
..+++++..+|.+....+.+|.++...|++++|+..+++++..+|.++.+|..+|.++...|+ +++|+..+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKE-YEEAIDAYALAAALDP 82 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCC
Confidence 368899999999999999999999999999999999999999999999999999999999999 99999988
Q ss_pred ---HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhh
Q psy8160 260 ---NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINN 299 (324)
Q Consensus 260 ---~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 299 (324)
..++.+|.+|...|++++ |+..|+++++++|+++....
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~--A~~~~~~al~~~p~~~~~~~ 123 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPES--ALKALDLAIEICGENPEYSE 123 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHH--HHHHHHHHHHhccccchHHH
Confidence 889999999999999999 99999999999999877543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1128|consensus | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.3e-12 Score=115.71 Aligned_cols=196 Identities=15% Similarity=0.150 Sum_probs=167.6
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLC 110 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 110 (324)
..|+..|++.- .+-....||...|+-.+|.....+-+..|.+..++-.+|++....--|+.|.+..+..
T Consensus 415 ksAl~I~Erle-----------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~~ 483 (777)
T KOG1128|consen 415 KSALVIFERLE-----------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNYI 483 (777)
T ss_pred HHHHHHHHhHH-----------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhhh
Confidence 88888888753 4556677999999999999998888865666677777777766666666666644433
Q ss_pred HHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHH
Q psy8160 111 LIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCL 190 (324)
Q Consensus 111 l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~ 190 (324)
- +.+.+.+|......++|.++..+++..++++ |-... +|+++|.+..+ .++++.|..+|
T Consensus 484 s----------arA~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~--~wf~~G~~ALq-------lek~q~av~aF 542 (777)
T KOG1128|consen 484 S----------ARAQRSLALLILSNKDFSEADKHLERSLEIN--PLQLG--TWFGLGCAALQ-------LEKEQAAVKAF 542 (777)
T ss_pred h----------HHHHHhhccccccchhHHHHHHHHHHHhhcC--ccchh--HHHhccHHHHH-------HhhhHHHHHHH
Confidence 2 2456777777788899999999999999999 87744 99999999988 44999999999
Q ss_pred HHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 191 QKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 191 ~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
..++.++|++..+|.+++..|...++-.+|...+.+|++.+-+++..|.+.-.+....|. +++|++.|
T Consensus 543 ~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge-~eda~~A~ 610 (777)
T KOG1128|consen 543 HRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGE-FEDAIKAY 610 (777)
T ss_pred HHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhccc-HHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999 99999999
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.1e-12 Score=98.44 Aligned_cols=174 Identities=12% Similarity=0.025 Sum_probs=131.0
Q ss_pred HHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q psy8160 69 SALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQL 148 (324)
Q Consensus 69 ~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 148 (324)
.+..+....+.+|.+..+ ..++..+...|+-+.+.....++....+.+. .+...+|......|++..|+..++++
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~----~ll~~~gk~~~~~g~~~~A~~~~rkA 126 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDR----ELLAAQGKNQIRNGNFGEAVSVLRKA 126 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccH----HHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 344444444477777777 6777777777877777777777665555544 45555788888888888888888888
Q ss_pred HhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy8160 149 LKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSV 228 (324)
Q Consensus 149 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 228 (324)
.... |++ .++|..+|-+|.+ .|+.++|..-|.+++++.|.++.+..++|..+.-.|+++.|...+..+.
T Consensus 127 ~~l~--p~d--~~~~~~lgaaldq-------~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~ 195 (257)
T COG5010 127 ARLA--PTD--WEAWNLLGAALDQ-------LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAY 195 (257)
T ss_pred hccC--CCC--hhhhhHHHHHHHH-------ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 8877 777 4488888888855 4488888888888888888888888888888888888888888888887
Q ss_pred ccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 229 EKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 229 ~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
...+.+..+.-+++.+.-..|+ +..|.+.-
T Consensus 196 l~~~ad~~v~~NLAl~~~~~g~-~~~A~~i~ 225 (257)
T COG5010 196 LSPAADSRVRQNLALVVGLQGD-FREAEDIA 225 (257)
T ss_pred hCCCCchHHHHHHHHHHhhcCC-hHHHHhhc
Confidence 7777788888888888888888 77776543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-11 Score=115.64 Aligned_cols=221 Identities=14% Similarity=0.007 Sum_probs=162.0
Q ss_pred ccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCc--------
Q psy8160 48 LRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCT-------- 118 (324)
Q Consensus 48 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~-------- 118 (324)
|.+.+++..|...+...+++++|+...+.++ ..|+...+++.+|.++...+++..+.-. .++...+...
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~ 105 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHI 105 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHH
Confidence 3456788889999988999999999999888 8899999999999888888877776665 4444433332
Q ss_pred -------ccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHH
Q psy8160 119 -------FTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQ 191 (324)
Q Consensus 119 -------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~ 191 (324)
.....+++.+|.||..+|+.++|...|++++..+ |.+ +.++.++|..+.. . +.++|+.++.
T Consensus 106 ~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--~~n--~~aLNn~AY~~ae-------~-dL~KA~~m~~ 173 (906)
T PRK14720 106 CDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--RDN--PEIVKKLATSYEE-------E-DKEKAITYLK 173 (906)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--ccc--HHHHHHHHHHHHH-------h-hHHHHHHHHH
Confidence 0111477778888888888888888888888888 777 4488888877755 3 6777888888
Q ss_pred HHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHH
Q psy8160 192 KSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVI 271 (324)
Q Consensus 192 ~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~ 271 (324)
+|+.. +...+++.++.+.+.+.+..+|++.+....+=......-. +..++ ..+.-+=..|..
T Consensus 174 KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~-~~~~~---~~~~~l~~~y~~ 235 (906)
T PRK14720 174 KAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHRE-FTRLV---GLLEDLYEPYKA 235 (906)
T ss_pred HHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhc-cchhH---HHHHHHHHHHhh
Confidence 87766 5666778888888888888888887765554333222211 23333 234445567888
Q ss_pred cCCCCcchHHHHHHHhhhcCCChhhhhhchh
Q psy8160 272 NNIPTSNNNRQCYNSYSTSIASCKHINNNKD 302 (324)
Q Consensus 272 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 302 (324)
.+++++ ++..++.+++++|+|..++..+.
T Consensus 236 ~~~~~~--~i~iLK~iL~~~~~n~~a~~~l~ 264 (906)
T PRK14720 236 LEDWDE--VIYILKKILEHDNKNNKAREELI 264 (906)
T ss_pred hhhhhH--HHHHHHHHHhcCCcchhhHHHHH
Confidence 899999 99999999999999887766654
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.9e-12 Score=117.85 Aligned_cols=254 Identities=8% Similarity=-0.056 Sum_probs=189.6
Q ss_pred hhccccccchhhhHhHHHH-H----HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCc
Q psy8160 11 EGIVTSVRVPKLQQFGKTL-N----IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPC 84 (324)
Q Consensus 11 ~~~~~~~~~~~l~~~~~~~-~----~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~ 84 (324)
.+-.+|..+..+.++.... . ++|+......++..|+. ...++.+|.++.+.+++.++... .++ .-+.+.
T Consensus 23 ~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~---i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~ 97 (906)
T PRK14720 23 ANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKS---ISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL 97 (906)
T ss_pred cccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcc---eehHHHHHHHHHhhcchhhhhhh--hhhhhccccc
Confidence 3445555655555543333 2 99999999999999874 45799999999998888776665 444 444443
Q ss_pred -------------------hhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHH
Q psy8160 85 -------------------TFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSY 145 (324)
Q Consensus 85 -------------------~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 145 (324)
.+...+|.+|...|+.++|...|++++..+|.+. .+..++|..+... ++++|++++
T Consensus 98 ~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~----~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 98 KWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNP----EIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred chhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccH----HHHHHHHHHHHHh-hHHHHHHHH
Confidence 7888899999999999999999999999998876 8999999999999 999999999
Q ss_pred HHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH--------------------HHHH
Q psy8160 146 EQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG--------------------QSLY 205 (324)
Q Consensus 146 ~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--------------------~~~~ 205 (324)
.+++... -+ .+++.++..++.+.+..+|.+. ..+.
T Consensus 173 ~KAV~~~--i~-----------------------~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~ 227 (906)
T PRK14720 173 KKAIYRF--IK-----------------------KKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLE 227 (906)
T ss_pred HHHHHHH--Hh-----------------------hhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHH
Confidence 9998764 11 1144555555556555555544 3344
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHH
Q psy8160 206 LLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYN 285 (324)
Q Consensus 206 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~ 285 (324)
-+=.+|...++|++++..++.+++.+|++..+...++.||... |.. ...++-+..+..+-..-..+.. |+..|+
T Consensus 228 ~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~k---Y~~-~~~~ee~l~~s~l~~~~~~~~~--~i~~fe 301 (906)
T PRK14720 228 DLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEK---YKD-HSLLEDYLKMSDIGNNRKPVKD--CIADFE 301 (906)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHH---ccC-cchHHHHHHHhccccCCccHHH--HHHHHH
Confidence 4458899999999999999999999999999999999999833 322 2222222333332222235678 999999
Q ss_pred HhhhcCCChhhhhhchhhhc
Q psy8160 286 SYSTSIASCKHINNNKDFSN 305 (324)
Q Consensus 286 ~al~~~p~~~~~~~~l~~~~ 305 (324)
+.+..+|++--++...++..
T Consensus 302 k~i~f~~G~yv~H~~WGvG~ 321 (906)
T PRK14720 302 KNIVFDTGNFVYHRTWGVGK 321 (906)
T ss_pred HHeeecCCCEEEEcCCCCce
Confidence 99999999988887776543
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=6e-11 Score=114.82 Aligned_cols=227 Identities=12% Similarity=0.077 Sum_probs=120.7
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh---cCCCCchhhHHHHHHHHhcccHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL---IDASPCTFTKLEGLMFKVNNEYDSALKHL 107 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al---~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 107 (324)
++|.+.|++... |+ ...|..+...|.+.|++++|++.|++.. ..|+.......+. .+...|+.+.|.+.+
T Consensus 340 ~~A~~vf~~m~~--~d----~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~-a~~~~g~~~~a~~l~ 412 (857)
T PLN03077 340 GEAEKVFSRMET--KD----AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLS-ACACLGDLDVGVKLH 412 (857)
T ss_pred HHHHHHHhhCCC--CC----eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHH-HHhccchHHHHHHHH
Confidence 666666665432 21 2245666666666666666666666554 2344443333332 444555555555555
Q ss_pred HHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHH
Q psy8160 108 TLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAI 187 (324)
Q Consensus 108 ~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~ 187 (324)
+.+........ ..++..+...|...|++++|.+.|++....+ ..+|..+...|.. .++.++|+
T Consensus 413 ~~~~~~g~~~~---~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d-------~vs~~~mi~~~~~-------~g~~~eA~ 475 (857)
T PLN03077 413 ELAERKGLISY---VVVANALIEMYSKCKCIDKALEVFHNIPEKD-------VISWTSIIAGLRL-------NNRCFEAL 475 (857)
T ss_pred HHHHHhCCCcc---hHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC-------eeeHHHHHHHHHH-------CCCHHHHH
Confidence 55554432221 2345556666777777777777776643222 1245555444433 33666666
Q ss_pred HHHHHHhhh-CCccHHHH----------------------------------HHHHHHHHHcCCHHHHHHHHHHHHccCC
Q psy8160 188 HCLQKSIEA-DPKSGQSL----------------------------------YLLGRCFAAVGKVHDAFLAYRNSVEKSE 232 (324)
Q Consensus 188 ~~~~~al~~-~~~~~~~~----------------------------------~~lg~~~~~~~~~~~A~~~~~~al~~~p 232 (324)
..|++.+.. .|+..... ..+-..|.+.|+.++|...|+.. +
T Consensus 476 ~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~ 551 (857)
T PLN03077 476 IFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----E 551 (857)
T ss_pred HHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----C
Confidence 666666532 22221111 11224455556666666666553 3
Q ss_pred CCHHHHHHhHHHHhhcCCCHHHHHHHH------------HHHHhhHHHHHHcCCCCcchHHHHHHHhh
Q psy8160 233 GNADTWCSIGNKDFSNNSNREDYHQAL------------NKYRDLGDFLVINNIPTSNNNRQCYNSYS 288 (324)
Q Consensus 233 ~~~~~~~~lg~~~~~~~~~~~~A~~~~------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al 288 (324)
.+..+|..+...|...|+ .++|++.| .++..+-..+.+.|..++ |.++|+...
T Consensus 552 ~d~~s~n~lI~~~~~~G~-~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~e--a~~~f~~M~ 616 (857)
T PLN03077 552 KDVVSWNILLTGYVAHGK-GSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQ--GLEYFHSME 616 (857)
T ss_pred CChhhHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHH--HHHHHHHHH
Confidence 455666666666666666 66666666 334444445555666666 666666555
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.2e-12 Score=115.02 Aligned_cols=145 Identities=10% Similarity=0.014 Sum_probs=121.7
Q ss_pred cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCch
Q psy8160 79 IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHL 158 (324)
Q Consensus 79 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 158 (324)
.-|....++.+||.+....|.+++|+..++.++...|.+. .++..++.++...+++++|+..+++++..+ |++
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~----~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~- 153 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSS----EAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSS- 153 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcH----HHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCC-
Confidence 3577788888888888888888888888888888888876 788888888888899999999999988888 887
Q ss_pred hhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q psy8160 159 KADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTW 238 (324)
Q Consensus 159 ~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 238 (324)
+..++.+|.++.. .|++++|+..|++++..+|+++.+|..+|.++...|+.++|...|+++++...+-...+
T Consensus 154 -~~~~~~~a~~l~~-------~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 154 -AREILLEAKSWDE-------IGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred -HHHHHHHHHHHHH-------hcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence 5588888888865 45888999999999888888888999999999999999999999999988776555443
|
|
| >KOG1130|consensus | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.7e-13 Score=113.88 Aligned_cols=231 Identities=14% Similarity=0.096 Sum_probs=175.0
Q ss_pred HHHHHHhccHHHHHHHHHHHh-cCCCCchh----hHHHHHHHHhcccHHHHHHHHHHHHHh--cCCCcccHHHHHHHHHH
Q psy8160 58 GLMFKVNNEYDSALKHLTLCL-IDASPCTF----TKLEGLMFKVNNEYDSALKHLTLCLID--ASPCTFTKLEVRFHIAH 130 (324)
Q Consensus 58 g~~~~~~~~~~~A~~~~~~al-~~~~~~~~----~~~la~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~~~~~la~ 130 (324)
|.-.+++|++...+..|+.++ ....+... +..+|+.|...++|++|+++...-+.. ...+....+.+.-++|.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 455678999999999999999 66655443 344799999999999999977654322 22222333356678999
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCC--CCchhhHHHHHHHHHHHhhh-hh--------c----ccchhHHHHHHHHHHHhh
Q psy8160 131 LHEVQRKYKTAKDSYEQLLKEDDL--PVHLKADICRQLGWMYHCID-TL--------G----EKSHRETLAIHCLQKSIE 195 (324)
Q Consensus 131 ~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~l~~~~~~~~-~~--------~----~~~~~~~~A~~~~~~al~ 195 (324)
++...|.|++|+.+..+-+..... ..-.++.+++++|.+|.... .. | +....++.|.++|..-++
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988877654311 11123679999999995421 01 1 124456778888888777
Q ss_pred hCCccH------HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC------HHHHHHhHHHHhhcCCCHHHHHHHH----
Q psy8160 196 ADPKSG------QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN------ADTWCSIGNKDFSNNSNREDYHQAL---- 259 (324)
Q Consensus 196 ~~~~~~------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~~A~~~~---- 259 (324)
+..... .++-+||..|+-.|+|+.|+..-+.=+.+.... -.++.++|.++.-.|+ ++.|+++|
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~-fe~A~ehYK~tl 262 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGN-FELAIEHYKLTL 262 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcc-cHhHHHHHHHHH
Confidence 654433 577889999999999999999888777766544 3478899999999999 99999999
Q ss_pred -------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcC
Q psy8160 260 -------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSI 291 (324)
Q Consensus 260 -------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~ 291 (324)
...+.||..|.-..++++ ||.++.+.+.+.
T Consensus 263 ~LAielg~r~vEAQscYSLgNtytll~e~~k--AI~Yh~rHLaIA 305 (639)
T KOG1130|consen 263 NLAIELGNRTVEAQSCYSLGNTYTLLKEVQK--AITYHQRHLAIA 305 (639)
T ss_pred HHHHHhcchhHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHH
Confidence 567899999999999999 999999988764
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.3e-10 Score=109.70 Aligned_cols=264 Identities=11% Similarity=-0.003 Sum_probs=175.4
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLC 110 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 110 (324)
++|.+.+..+.+.... .+..++..+...|.+.|++++|.+.|++.. + .+...+..+...|...|+.++|+..|++.
T Consensus 406 ~~a~~l~~~~~~~g~~--~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~-~d~vs~~~mi~~~~~~g~~~eA~~lf~~m 481 (857)
T PLN03077 406 DVGVKLHELAERKGLI--SYVVVANALIEMYSKCKCIDKALEVFHNIP-E-KDVISWTSIIAGLRLNNRCFEALIFFRQM 481 (857)
T ss_pred HHHHHHHHHHHHhCCC--cchHHHHHHHHHHHHcCCHHHHHHHHHhCC-C-CCeeeHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4455555554443321 123345566677777888888888887654 1 23445666667777788888888888877
Q ss_pred HHhcCCCcccHHH-------------------------------HHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchh
Q psy8160 111 LIDASPCTFTKLE-------------------------------VRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK 159 (324)
Q Consensus 111 l~~~~~~~~~~~~-------------------------------~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 159 (324)
+...+++..+-.. +...+-..|...|+.++|...|+.. . ++
T Consensus 482 ~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~--~d--- 553 (857)
T PLN03077 482 LLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---E--KD--- 553 (857)
T ss_pred HhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc---C--CC---
Confidence 6543333211100 1112235566667777777777664 1 22
Q ss_pred hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc---CCCC
Q psy8160 160 ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEA--DPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEK---SEGN 234 (324)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~ 234 (324)
..+|..+...|.. .|+.++|+..|++..+. .|+ ..++..+-..+...|++++|...|+...+. .| +
T Consensus 554 ~~s~n~lI~~~~~-------~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P-~ 624 (857)
T PLN03077 554 VVSWNILLTGYVA-------HGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP-N 624 (857)
T ss_pred hhhHHHHHHHHHH-------cCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC-c
Confidence 3367777766655 45889999999988763 454 344555556788899999999999988743 34 4
Q ss_pred HHHHHHhHHHHhhcCCCHHHHHHHH---------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhc
Q psy8160 235 ADTWCSIGNKDFSNNSNREDYHQAL---------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSN 305 (324)
Q Consensus 235 ~~~~~~lg~~~~~~~~~~~~A~~~~---------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 305 (324)
...+..+..++.+.|+ +++|.+.+ .+|..|-..+...++.+. +....+++++++|+++.....+..+.
T Consensus 625 ~~~y~~lv~~l~r~G~-~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~--~e~~a~~l~~l~p~~~~~y~ll~n~y 701 (857)
T PLN03077 625 LKHYACVVDLLGRAGK-LTEAYNFINKMPITPDPAVWGALLNACRIHRHVEL--GELAAQHIFELDPNSVGYYILLCNLY 701 (857)
T ss_pred hHHHHHHHHHHHhCCC-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH--HHHHHHHHHhhCCCCcchHHHHHHHH
Confidence 5688889999999999 99999988 678777778888888888 99999999999999887766554332
Q ss_pred cCChhhHHHHHHHH
Q psy8160 306 NSNREDYHQALNKY 319 (324)
Q Consensus 306 ~~~~~~~~~a~~~~ 319 (324)
...|++++|..-.
T Consensus 702 -a~~g~~~~a~~vr 714 (857)
T PLN03077 702 -ADAGKWDEVARVR 714 (857)
T ss_pred -HHCCChHHHHHHH
Confidence 2234455444433
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.7e-12 Score=94.61 Aligned_cols=92 Identities=14% Similarity=0.017 Sum_probs=84.3
Q ss_pred hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHH
Q psy8160 160 ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWC 239 (324)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 239 (324)
-+..+.+|..++. .|++++|+..|+-+...+|.+...|++||.|+..+|++++|+..|.+++.++|++|..++
T Consensus 35 l~~lY~~A~~ly~-------~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 35 LNTLYRYAMQLME-------VKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred HHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 3477888888877 559999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHhhcCCCHHHHHHHH
Q psy8160 240 SIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 240 ~lg~~~~~~~~~~~~A~~~~ 259 (324)
++|.|++..|+ .+.|.++|
T Consensus 108 ~ag~c~L~lG~-~~~A~~aF 126 (157)
T PRK15363 108 AAAECYLACDN-VCYAIKAL 126 (157)
T ss_pred HHHHHHHHcCC-HHHHHHHH
Confidence 99999999999 77776665
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-10 Score=91.84 Aligned_cols=179 Identities=15% Similarity=0.083 Sum_probs=160.0
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTL 109 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 109 (324)
..+...+-+....+|+ ..++ ..++..+...|+-+.+.....++. ..|++......+|......|+|.+|+..+.+
T Consensus 50 ~~a~~al~~~~~~~p~---d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rk 125 (257)
T COG5010 50 QGAAAALGAAVLRNPE---DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRK 125 (257)
T ss_pred hHHHHHHHHHHhcCcc---hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 6677777777788875 3456 889999999999999999999988 8899988888899999999999999999999
Q ss_pred HHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHH
Q psy8160 110 CLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHC 189 (324)
Q Consensus 110 ~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~ 189 (324)
+....|++. +++..+|-+|.+.|+++.|...|.++++.. |.. +.+..++|..+.- .|+++.|..+
T Consensus 126 A~~l~p~d~----~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~--~~~--p~~~nNlgms~~L-------~gd~~~A~~l 190 (257)
T COG5010 126 AARLAPTDW----EAWNLLGAALDQLGRFDEARRAYRQALELA--PNE--PSIANNLGMSLLL-------RGDLEDAETL 190 (257)
T ss_pred HhccCCCCh----hhhhHHHHHHHHccChhHHHHHHHHHHHhc--cCC--chhhhhHHHHHHH-------cCCHHHHHHH
Confidence 999999887 899999999999999999999999999999 877 4599999999976 5599999999
Q ss_pred HHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy8160 190 LQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSV 228 (324)
Q Consensus 190 ~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 228 (324)
+.++...-+.+..+..+++.+....|+++.|.....+-+
T Consensus 191 ll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 191 LLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 999998888899999999999999999999998765543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.5e-11 Score=88.78 Aligned_cols=99 Identities=10% Similarity=0.022 Sum_probs=94.2
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHI 128 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~l 128 (324)
.-+..+.+|..++..|++++|.+.|+-++ .||.+...+..||.++...|++.+|+..|.+++...|.++ ..++++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp----~~~~~a 109 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP----QAPWAA 109 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc----hHHHHH
Confidence 45678999999999999999999999999 9999999999999999999999999999999999998887 889999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcC
Q psy8160 129 AHLHEVQRKYKTAKDSYEQLLKED 152 (324)
Q Consensus 129 a~~~~~~~~~~~A~~~~~~al~~~ 152 (324)
|.|+...|+.+.|.+.|+.++...
T Consensus 110 g~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 110 AECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999876
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.4e-10 Score=90.93 Aligned_cols=168 Identities=16% Similarity=0.184 Sum_probs=118.4
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Q psy8160 51 NEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAH 130 (324)
Q Consensus 51 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~ 130 (324)
++.++..|..++..|+|++|++.|+ +++...|.+.. ..++.+.+|.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~---------------------------------~l~~~~P~s~~-a~~A~l~la~ 50 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFE---------------------------------KLIDRYPNSPY-APQAQLMLAY 50 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHH---------------------------------HHHHH-TTSTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHH---------------------------------HHHHHCCCChH-HHHHHHHHHH
Confidence 3455666666666666666666666 44444444432 2367888899
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCCCCchh-hHHHHHHHHHHHhhhhh----cccchhHHHHHHHHHHHhhhCCccHH---
Q psy8160 131 LHEVQRKYKTAKDSYEQLLKEDDLPVHLK-ADICRQLGWMYHCIDTL----GEKSHRETLAIHCLQKSIEADPKSGQ--- 202 (324)
Q Consensus 131 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~l~~~~~~~~~~----~~~~~~~~~A~~~~~~al~~~~~~~~--- 202 (324)
++...|+++.|+..+++.+... |.+.. ..+++.+|.+++..... ........+|+..|+..+...|+++.
T Consensus 51 a~y~~~~y~~A~~~~~~fi~~y--P~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~ 128 (203)
T PF13525_consen 51 AYYKQGDYEEAIAAYERFIKLY--PNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEE 128 (203)
T ss_dssp HHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC--CCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHH
Confidence 9999999999999999999888 76654 57888888887653211 11244678999999999999999861
Q ss_pred --------------HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH---HHHHHhHHHHhhcCCCHHHH
Q psy8160 203 --------------SLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNA---DTWCSIGNKDFSNNSNREDY 255 (324)
Q Consensus 203 --------------~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~~~~~~~A 255 (324)
--+.+|..|...|.+..|+..++.+++..|+.+ +++..++..|..+|. .+.|
T Consensus 129 A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~-~~~a 197 (203)
T PF13525_consen 129 AKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGL-KQAA 197 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT--HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCC-hHHH
Confidence 224578999999999999999999999999884 578889999999998 7754
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2e-11 Score=105.34 Aligned_cols=114 Identities=19% Similarity=0.105 Sum_probs=103.4
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHH
Q psy8160 125 RFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSL 204 (324)
Q Consensus 125 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 204 (324)
+...|...+..|++++|+..|++++..+ |.+ +.++..+|.++.. .+++++|+..+++++.++|.++.++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~--P~~--~~a~~~~a~~~~~-------~g~~~eAl~~~~~Al~l~P~~~~a~ 73 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLD--PNN--AELYADRAQANIK-------LGNFTEAVADANKAIELDPSLAKAY 73 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC--HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCcCCHHHH
Confidence 4456888889999999999999999999 887 4599999999977 5599999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcC
Q psy8160 205 YLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNN 249 (324)
Q Consensus 205 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 249 (324)
+.+|.++..+|++++|+..|++++.++|+++.+...++.|.....
T Consensus 74 ~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 74 LRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988866553
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.8e-11 Score=100.63 Aligned_cols=160 Identities=16% Similarity=0.125 Sum_probs=104.9
Q ss_pred HHHHHhcccHHHHHHHHHHHHHh--cCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCch--hhHHHHHH
Q psy8160 91 GLMFKVNNEYDSALKHLTLCLID--ASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHL--KADICRQL 166 (324)
Q Consensus 91 a~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~l 166 (324)
|..|...+++++|.++|.++... ...+.......+...+.++... ++++|+.+|++++......+.. -+.++..+
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~l 120 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKEL 120 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 45555555555555555555332 1222223345566677777666 9999999999998764222222 26788899
Q ss_pred HHHHHhhhhhcccc-hhHHHHHHHHHHHhhhCCcc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-----
Q psy8160 167 GWMYHCIDTLGEKS-HRETLAIHCLQKSIEADPKS------GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN----- 234 (324)
Q Consensus 167 ~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~~~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----- 234 (324)
|.+|.. . +++++|+.+|++|++..... ...+..+|.++...|+|++|+..|+++....-++
T Consensus 121 A~~ye~-------~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~ 193 (282)
T PF14938_consen 121 AEIYEE-------QLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY 193 (282)
T ss_dssp HHHHCC-------TT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred HHHHHH-------HcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence 998855 3 59999999999998764222 2667889999999999999999999998754322
Q ss_pred --HHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 235 --ADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 235 --~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
...++..+.|++..|+ +..|...+
T Consensus 194 ~~~~~~l~a~l~~L~~~D-~v~A~~~~ 219 (282)
T PF14938_consen 194 SAKEYFLKAILCHLAMGD-YVAARKAL 219 (282)
T ss_dssp HHHHHHHHHHHHHHHTT--HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence 2345566777777777 77666665
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.9e-11 Score=100.10 Aligned_cols=221 Identities=15% Similarity=0.162 Sum_probs=148.2
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHhcCC---CCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHH
Q psy8160 51 NEVHLRLGLMFKVNNEYDSALKHLTLCLIDA---SPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFH 127 (324)
Q Consensus 51 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 127 (324)
..+...++..+...++-+.++..++..+.++ .+.......|.++...|++++|++.+.+. . ..+....
T Consensus 66 l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~----~lE~~al 136 (290)
T PF04733_consen 66 LQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----G----SLELLAL 136 (290)
T ss_dssp CHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----T----CHHHHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----C----cccHHHH
Confidence 3344555555444445666666666655222 33444555678888889999888855432 1 1255666
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHH
Q psy8160 128 IAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLL 207 (324)
Q Consensus 128 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 207 (324)
.-.++...++++.|.+.++..-+.+ .+.+- +....+|+... .| .+.+.+|..+|++..+..+.++..+..+
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~~l--~qLa~awv~l~---~g--~e~~~~A~y~f~El~~~~~~t~~~lng~ 207 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQID--EDSIL--TQLAEAWVNLA---TG--GEKYQDAFYIFEELSDKFGSTPKLLNGL 207 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHCCS--CCHHH--HHHHHHHHHHH---HT--TTCCCHHHHHHHHHHCCS--SHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC--CcHHH--HHHHHHHHHHH---hC--chhHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 6778888999999999998887776 65522 33333444433 22 2367889999999888778888888899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHh
Q psy8160 208 GRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSY 287 (324)
Q Consensus 208 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~a 287 (324)
+.+++.+|+|++|...+.+++..+|++++++.+++.+....|+ .. +. +.++..+.
T Consensus 208 A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk-~~----------------------~~--~~~~l~qL 262 (290)
T PF04733_consen 208 AVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGK-PT----------------------EA--AERYLSQL 262 (290)
T ss_dssp HHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT--TC----------------------HH--HHHHHHHC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCC-Ch----------------------hH--HHHHHHHH
Confidence 9999999999999999999999999999988888888888777 21 23 55677777
Q ss_pred hhcCCChhhhhhchhhhccCChhhHHHHHHHH
Q psy8160 288 STSIASCKHINNNKDFSNNSNREDYHQALNKY 319 (324)
Q Consensus 288 l~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~ 319 (324)
...+|++|.+..... ....|+++..+|
T Consensus 263 ~~~~p~h~~~~~~~~-----~~~~FD~~~~ky 289 (290)
T PF04733_consen 263 KQSNPNHPLVKDLAE-----KEAEFDRAVAKY 289 (290)
T ss_dssp HHHTTTSHHHHHHHH-----HHHHHHHHHHCC
T ss_pred HHhCCCChHHHHHHH-----HHHHHHHHHHhc
Confidence 778898887655332 246677776665
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.4e-11 Score=93.90 Aligned_cols=141 Identities=10% Similarity=0.069 Sum_probs=107.4
Q ss_pred HhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc---HHHHHHHHHH
Q psy8160 134 VQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS---GQSLYLLGRC 210 (324)
Q Consensus 134 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~lg~~ 210 (324)
..+.+..+...+...+... +....+..++.+|.++.. .+++++|+..|++++.+.|+. +.+++++|.+
T Consensus 11 ~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~g~~~~~-------~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~ 81 (168)
T CHL00033 11 IDKTFTIVADILLRILPTT--SGEKEAFTYYRDGMSAQS-------EGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLI 81 (168)
T ss_pred cccccccchhhhhHhccCC--chhHHHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHhccccchhhHHHHHHHHHH
Confidence 3444666666666655555 444457788999999876 459999999999999887653 4589999999
Q ss_pred HHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhc
Q psy8160 211 FAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTS 290 (324)
Q Consensus 211 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~ 290 (324)
+...|++++|+..|++++.++|.++..+..+|.++...|. ....+|........+++ |+..|++++..
T Consensus 82 ~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~----------~~~~~g~~~~A~~~~~~--a~~~~~~a~~~ 149 (168)
T CHL00033 82 HTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGE----------QAIEQGDSEIAEAWFDQ--AAEYWKQAIAL 149 (168)
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhH----------HHHHcccHHHHHHHHHH--HHHHHHHHHHh
Confidence 9999999999999999999999999999999999985554 11122332223334667 99999999999
Q ss_pred CCChh
Q psy8160 291 IASCK 295 (324)
Q Consensus 291 ~p~~~ 295 (324)
+|.+.
T Consensus 150 ~p~~~ 154 (168)
T CHL00033 150 APGNY 154 (168)
T ss_pred CcccH
Confidence 98643
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.2e-10 Score=89.69 Aligned_cols=165 Identities=9% Similarity=0.051 Sum_probs=115.7
Q ss_pred HHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchh-hHHHHHHHHH
Q psy8160 91 GLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK-ADICRQLGWM 169 (324)
Q Consensus 91 a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~l~~~ 169 (324)
|..+...|++++|++.|++++...|.+. ....+.+.+|.++...+++++|+..|++.+... |++.. ..+++.+|.+
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~-~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~--P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGP-YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--cCCCchHHHHHHHHHh
Confidence 4444444555555555555555555443 222456778888888888888888888888887 66644 5677777776
Q ss_pred HHhhhh-----------hcccchhHHHHHHHHHHHhhhCCccHH-----------------HHHHHHHHHHHcCCHHHHH
Q psy8160 170 YHCIDT-----------LGEKSHRETLAIHCLQKSIEADPKSGQ-----------------SLYLLGRCFAAVGKVHDAF 221 (324)
Q Consensus 170 ~~~~~~-----------~~~~~~~~~~A~~~~~~al~~~~~~~~-----------------~~~~lg~~~~~~~~~~~A~ 221 (324)
+..... .........+|+..|++.++..|++.- --+.+|..|...|.|..|+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~ 195 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVV 195 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence 533210 000122356789999999999998861 1235788899999999999
Q ss_pred HHHHHHHccCCCC---HHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 222 LAYRNSVEKSEGN---ADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 222 ~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
.-++.+++.-|+. +++...++..|...|. .++|.+..
T Consensus 196 ~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~-~~~a~~~~ 235 (243)
T PRK10866 196 NRVEQMLRDYPDTQATRDALPLMENAYRQLQL-NAQADKVA 235 (243)
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHcCC-hHHHHHHH
Confidence 9999999988876 5788889999999999 88886643
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.5e-11 Score=91.81 Aligned_cols=129 Identities=10% Similarity=0.085 Sum_probs=104.4
Q ss_pred HHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc---HHHHHHHHHHHHHcCCHHHHHH
Q psy8160 146 EQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS---GQSLYLLGRCFAAVGKVHDAFL 222 (324)
Q Consensus 146 ~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~lg~~~~~~~~~~~A~~ 222 (324)
...+..+ +....+.+++.+|..+.. .+++++|+.+|+++++..|+. +.++..+|.++...|++++|+.
T Consensus 23 ~~~~~~~--~~~~~a~~~~~lg~~~~~-------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 93 (172)
T PRK02603 23 LKILPIN--KKAKEAFVYYRDGMSAQA-------DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALE 93 (172)
T ss_pred HHHcccc--cHhhhHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4444444 333346789999999976 559999999999999887653 4689999999999999999999
Q ss_pred HHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChh
Q psy8160 223 AYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCK 295 (324)
Q Consensus 223 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (324)
.+++++...|.++..+..+|.++...|+ ...+...+ -.....+.+ |++++++++..+|++.
T Consensus 94 ~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~a~~~~---------~~A~~~~~~--A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 94 YYHQALELNPKQPSALNNIAVIYHKRGE-KAEEAGDQ---------DEAEALFDK--AAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCC-hHhHhhCH---------HHHHHHHHH--HHHHHHHHHhhCchhH
Confidence 9999999999999999999999999998 76665433 112234678 9999999999999873
|
|
| >KOG3785|consensus | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.8e-09 Score=86.86 Aligned_cols=235 Identities=11% Similarity=0.055 Sum_probs=162.0
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTL 109 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 109 (324)
.-|+..++-.+..+.+ ........+|.|+++.|||++|+..|..+. .+..+...+..+|-++...|.|.+|...-.+
T Consensus 39 tGAislLefk~~~~~E--EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~k 116 (557)
T KOG3785|consen 39 TGAISLLEFKLNLDRE--EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEK 116 (557)
T ss_pred hhHHHHHHHhhccchh--hhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhh
Confidence 6788887777755543 234577889999999999999999999988 7888888999999999999999999985554
Q ss_pred HHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHH
Q psy8160 110 CLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHC 189 (324)
Q Consensus 110 ~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~ 189 (324)
+ |.++ ....+.+.++ ...++ ++-+..|.+.+... . +-...++.+++.. -.|++|++.
T Consensus 117 a----~k~p-L~~RLlfhla---hklnd-Ek~~~~fh~~LqD~--~-----EdqLSLAsvhYmR-------~HYQeAIdv 173 (557)
T KOG3785|consen 117 A----PKTP-LCIRLLFHLA---HKLND-EKRILTFHSSLQDT--L-----EDQLSLASVHYMR-------MHYQEAIDV 173 (557)
T ss_pred C----CCCh-HHHHHHHHHH---HHhCc-HHHHHHHHHHHhhh--H-----HHHHhHHHHHHHH-------HHHHHHHHH
Confidence 4 3333 1224444444 33443 33344555554433 1 1223344444331 158889999
Q ss_pred HHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhc--CCCHHHH-HHHH-------
Q psy8160 190 LQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSN--NSNREDY-HQAL------- 259 (324)
Q Consensus 190 ~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--~~~~~~A-~~~~------- 259 (324)
|.+.+..+|+..-.-..++.||.++.-++-+.+.+..-++..|+++-+....+-..++. |+ ..++ ++.+
T Consensus 174 YkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr-~ae~E~k~ladN~~~~ 252 (557)
T KOG3785|consen 174 YKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGR-TAEDEKKELADNIDQE 252 (557)
T ss_pred HHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccc-hhHHHHHHHHhccccc
Confidence 99999888888777788899999999999999998888999998887766555544433 22 2211 1111
Q ss_pred ---------------------------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhh
Q psy8160 260 ---------------------------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKH 296 (324)
Q Consensus 260 ---------------------------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 296 (324)
++-.+|...|..+++.++ |+...+ +++|..|.
T Consensus 253 ~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqe--A~~L~K---dl~PttP~ 317 (557)
T KOG3785|consen 253 YPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQE--AISLCK---DLDPTTPY 317 (557)
T ss_pred chhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHH--HHHHHh---hcCCCChH
Confidence 566777777777787777 777665 55677664
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.8e-10 Score=94.89 Aligned_cols=153 Identities=14% Similarity=0.109 Sum_probs=136.4
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHH
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQ 202 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 202 (324)
.+++..+..+...|++++|+..++.++... |++. ..+...+.++.. .++.++|++.+++++.++|..+-
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~--P~N~--~~~~~~~~i~~~-------~nk~~~A~e~~~kal~l~P~~~~ 375 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIAAQ--PDNP--YYLELAGDILLE-------ANKAKEAIERLKKALALDPNSPL 375 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHhC--CCCH--HHHHHHHHHHHH-------cCChHHHHHHHHHHHhcCCCccH
Confidence 688999999999999999999999999988 9884 377777888866 44899999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHH
Q psy8160 203 SLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQ 282 (324)
Q Consensus 203 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~ 282 (324)
.++++|.+++..|++.+|+..++..+..+|+++..|..|+..|..+|+ ..+|... .+..|.-.|.+++ |+.
T Consensus 376 l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~-~~~a~~A------~AE~~~~~G~~~~--A~~ 446 (484)
T COG4783 376 LQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGN-RAEALLA------RAEGYALAGRLEQ--AII 446 (484)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCc-hHHHHHH------HHHHHHhCCCHHH--HHH
Confidence 999999999999999999999999999999999999999999999999 8887554 5566667889999 999
Q ss_pred HHHHhhhcC-CChh
Q psy8160 283 CYNSYSTSI-ASCK 295 (324)
Q Consensus 283 ~~~~al~~~-p~~~ 295 (324)
.+..+.+.. ++.+
T Consensus 447 ~l~~A~~~~~~~~~ 460 (484)
T COG4783 447 FLMRASQQVKLGFP 460 (484)
T ss_pred HHHHHHHhccCCcH
Confidence 999998765 4444
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.1e-11 Score=103.49 Aligned_cols=97 Identities=10% Similarity=0.121 Sum_probs=83.1
Q ss_pred chhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 180 SHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
.+++++|+..|+++++.+|.++.+|+.+|.++...|++++|+..+++++.++|+++.+|+.+|.++...|+ +++
T Consensus 15 ~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~-~~e----- 88 (356)
T PLN03088 15 DDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE-YQT----- 88 (356)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC-HHH-----
Confidence 45999999999999999999999999999999999999999999999999999999999999999888888 544
Q ss_pred HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchh
Q psy8160 260 NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKD 302 (324)
Q Consensus 260 ~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 302 (324)
|+..|+++++++|+++.+...+.
T Consensus 89 --------------------A~~~~~~al~l~P~~~~~~~~l~ 111 (356)
T PLN03088 89 --------------------AKAALEKGASLAPGDSRFTKLIK 111 (356)
T ss_pred --------------------HHHHHHHHHHhCCCCHHHHHHHH
Confidence 66666666666666665555443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.5e-10 Score=94.84 Aligned_cols=182 Identities=14% Similarity=0.083 Sum_probs=129.0
Q ss_pred CCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cC--CCC----chhhHHHHHHHHhcccHHHHHHHHHHHHHhc--C
Q psy8160 45 PSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-ID--ASP----CTFTKLEGLMFKVNNEYDSALKHLTLCLIDA--S 115 (324)
Q Consensus 45 p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~--~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--~ 115 (324)
|++..+.+.+...|.+|...++|++|.++|.++. .. ..+ ...+...+.++... ++++|+.+|++++... .
T Consensus 29 ~~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~ 107 (282)
T PF14938_consen 29 PDYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREA 107 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhc
Confidence 3444556677788888888888888888888876 32 111 11222345565555 9999999999998753 2
Q ss_pred CCcccHHHHHHHHHHHHHHh-hcHHHHHHHHHHHHhcCCCCCc--hhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHH
Q psy8160 116 PCTFTKLEVRFHIAHLHEVQ-RKYKTAKDSYEQLLKEDDLPVH--LKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQK 192 (324)
Q Consensus 116 ~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~ 192 (324)
......+.++..+|.+|... |++++|+++|++++......+. ....++..+|.++.. .++|++|+..|++
T Consensus 108 G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~-------l~~y~~A~~~~e~ 180 (282)
T PF14938_consen 108 GRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR-------LGRYEEAIEIYEE 180 (282)
T ss_dssp T-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-------TT-HHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH-------hCCHHHHHHHHHH
Confidence 33334567899999999999 9999999999999976421222 225677888888866 5599999999999
Q ss_pred HhhhCCcc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q psy8160 193 SIEADPKS-------GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN 234 (324)
Q Consensus 193 al~~~~~~-------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 234 (324)
.....-.+ ...++..+.|++..|++..|...+++....+|..
T Consensus 181 ~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 181 VAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred HHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 97653222 1456778899999999999999999999999865
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.24 E-value=3e-10 Score=82.29 Aligned_cols=107 Identities=20% Similarity=0.250 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchh-hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc-
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK-ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS- 200 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~- 200 (324)
++++.+|..+...|++++|++.|.+++..+ |++.. ..+++.+|.++.. .+++++|+..+++++..+|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~-------~~~~~~A~~~~~~~~~~~p~~~ 73 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYA-------QGKYADAAKAFLAVVKKYPKSP 73 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHh-------hccHHHHHHHHHHHHHHCCCCC
Confidence 568889999999999999999999999887 65422 4588889999977 458999999999999988875
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q psy8160 201 --GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTW 238 (324)
Q Consensus 201 --~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 238 (324)
+.+++.+|.++...|++++|+..+++++...|+++.+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 74 KAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred cccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 57899999999999999999999999999999887654
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.2e-08 Score=89.77 Aligned_cols=223 Identities=9% Similarity=0.049 Sum_probs=157.6
Q ss_pred hhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHh-----ccHHHHHHHHHHHh-cCCCCchhhHH----
Q psy8160 22 LQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVN-----NEYDSALKHLTLCL-IDASPCTFTKL---- 89 (324)
Q Consensus 22 l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~-----~~~~~A~~~~~~al-~~~~~~~~~~~---- 89 (324)
.+.+.+.++ ++|...|..+++.+|+ +...+..+..+.... .+.+.-...|+... ..|.......+
T Consensus 44 rA~ll~kLg~~~eA~~~y~~Li~rNPd---n~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~ 120 (517)
T PF12569_consen 44 RAELLLKLGRKEEAEKIYRELIDRNPD---NYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDF 120 (517)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhccc
Confidence 444444444 9999999999999987 444566666666322 25667778888777 66776544333
Q ss_pred ----------------------------HHHHHHhcccHHHHHHHHHHHHHh---cCC----------CcccHHHHHHHH
Q psy8160 90 ----------------------------EGLMFKVNNEYDSALKHLTLCLID---ASP----------CTFTKLEVRFHI 128 (324)
Q Consensus 90 ----------------------------la~~~~~~~~~~~A~~~~~~~l~~---~~~----------~~~~~~~~~~~l 128 (324)
+-.+|....+..-....++..+.. ... .+....-+++.+
T Consensus 121 ~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~l 200 (517)
T PF12569_consen 121 LEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFL 200 (517)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHH
Confidence 122222222222222222222211 100 111122366888
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHH
Q psy8160 129 AHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLG 208 (324)
Q Consensus 129 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg 208 (324)
|..|...|++++|+++.+++|... |..+ +.+...|.++-. .|++.+|...++.+-.+|+.+-.+-...+
T Consensus 201 Aqhyd~~g~~~~Al~~Id~aI~ht--Pt~~--ely~~KarilKh-------~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~a 269 (517)
T PF12569_consen 201 AQHYDYLGDYEKALEYIDKAIEHT--PTLV--ELYMTKARILKH-------AGDLKEAAEAMDEARELDLADRYINSKCA 269 (517)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcC--CCcH--HHHHHHHHHHHH-------CCCHHHHHHHHHHHHhCChhhHHHHHHHH
Confidence 999999999999999999999999 8874 499999999955 45999999999999999999988888889
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCC--CC-----HHHHH--HhHHHHhhcCCCHHHHHHHH
Q psy8160 209 RCFAAVGKVHDAFLAYRNSVEKSE--GN-----ADTWC--SIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 209 ~~~~~~~~~~~A~~~~~~al~~~p--~~-----~~~~~--~lg~~~~~~~~~~~~A~~~~ 259 (324)
..+++.|+.++|...+..-...+. .. -..|+ ..|.+|.+.|+ +..|++.|
T Consensus 270 Ky~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~-~~~ALk~~ 328 (517)
T PF12569_consen 270 KYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD-YGLALKRF 328 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHH
Confidence 999999999999999987755442 11 12454 57999999999 99999888
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.9e-11 Score=77.07 Aligned_cols=66 Identities=24% Similarity=0.435 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHccCC
Q psy8160 160 ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVG-KVHDAFLAYRNSVEKSE 232 (324)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~p 232 (324)
+.+|..+|.+++. .+++++|+.+|+++++.+|+++.+|+.+|.++..+| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~-------~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQ-------QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHH-------TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 5689999999977 559999999999999999999999999999999999 79999999999999988
|
... |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.2e-09 Score=84.86 Aligned_cols=175 Identities=9% Similarity=-0.005 Sum_probs=135.1
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhh---HHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFT---KLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVR 125 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~---~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 125 (324)
..+..+..|.-+...|+|++|++.|++++ ..|....+. ..+|.++...+++++|+..+++.+...|.++. ...++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~-~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN-IDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc-hHHHH
Confidence 45578899999999999999999999999 899886665 66899999999999999999999999888764 35789
Q ss_pred HHHHHHHHHhh------------------cHHHHHHHHHHHHhcCCCCCchh-hHHHHHHHHHHHhhh----hhc---cc
Q psy8160 126 FHIAHLHEVQR------------------KYKTAKDSYEQLLKEDDLPVHLK-ADICRQLGWMYHCID----TLG---EK 179 (324)
Q Consensus 126 ~~la~~~~~~~------------------~~~~A~~~~~~al~~~~~~~~~~-~~~~~~l~~~~~~~~----~~~---~~ 179 (324)
+.+|.++...+ ...+|+..|++.+... |++.. .++...+..+..... .++ .+
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y--P~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~ 187 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY--PNSQYTTDATKRLVFLKDRLAKYELSVAEYYTK 187 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998864443 1356889999999999 77643 233333322221100 000 12
Q ss_pred chhHHHHHHHHHHHhhhCCccH---HHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy8160 180 SHRETLAIHCLQKSIEADPKSG---QSLYLLGRCFAAVGKVHDAFLAYRNS 227 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~~~---~~~~~lg~~~~~~~~~~~A~~~~~~a 227 (324)
.+.+..|+.-++.+++..|+.+ ++++.++..|...|..++|.......
T Consensus 188 ~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 188 RGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred cCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 5589999999999999888765 88999999999999999998876543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.8e-09 Score=82.98 Aligned_cols=147 Identities=19% Similarity=0.215 Sum_probs=106.6
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTL 109 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 109 (324)
.+|++.|++++...|..+...++.+.+|.+++..|+++.|+..|++.+ ..|++..+-
T Consensus 22 ~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~---------------------- 79 (203)
T PF13525_consen 22 EEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD---------------------- 79 (203)
T ss_dssp HHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH----------------------
T ss_pred HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh----------------------
Confidence 999999999999999988889999999999999999999999999888 777664432
Q ss_pred HHHhcCCCcccHHHHHHHHHHHHH-----------HhhcHHHHHHHHHHHHhcCCCCCchh-hHHHH-------------
Q psy8160 110 CLIDASPCTFTKLEVRFHIAHLHE-----------VQRKYKTAKDSYEQLLKEDDLPVHLK-ADICR------------- 164 (324)
Q Consensus 110 ~l~~~~~~~~~~~~~~~~la~~~~-----------~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~------------- 164 (324)
.+++.+|.++. ..+...+|+..|+..+... |++.. ..+-.
T Consensus 80 -------------~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y--P~S~y~~~A~~~l~~l~~~la~~e 144 (203)
T PF13525_consen 80 -------------YALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY--PNSEYAEEAKKRLAELRNRLAEHE 144 (203)
T ss_dssp -------------HHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHHHHHH
T ss_pred -------------hHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC--cCchHHHHHHHHHHHHHHHHHHHH
Confidence 33444444433 3344567888888888888 76543 12222
Q ss_pred -HHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH---HHHHHHHHHHHHcCCHHHHH
Q psy8160 165 -QLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG---QSLYLLGRCFAAVGKVHDAF 221 (324)
Q Consensus 165 -~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~lg~~~~~~~~~~~A~ 221 (324)
.+|..|+. .+.+..|+..++.+++..|+.+ +++..++.+|..+|..+.|.
T Consensus 145 ~~ia~~Y~~-------~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 145 LYIARFYYK-------RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHC-------TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHH-------cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 23344433 5689999999999999999886 78899999999999988543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.9e-08 Score=82.17 Aligned_cols=226 Identities=14% Similarity=0.060 Sum_probs=152.4
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHh-cCCCC-chhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Q psy8160 54 HLRLGLMFKVNNEYDSALKHLTLCL-IDASP-CTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHL 131 (324)
Q Consensus 54 ~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~ 131 (324)
+..-+...-.+||++.|=.++.++. ..+++ .......+.+...+|++..|.....+++...|..+ ++......+
T Consensus 121 ~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~----~vlrLa~r~ 196 (400)
T COG3071 121 YLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHP----EVLRLALRA 196 (400)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCCh----HHHHHHHHH
Confidence 4444556677888888888888888 43333 33344468888888888888888888888777776 777777788
Q ss_pred HHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHH---HHhhhhhc-----------------------------cc
Q psy8160 132 HEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWM---YHCIDTLG-----------------------------EK 179 (324)
Q Consensus 132 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~---~~~~~~~~-----------------------------~~ 179 (324)
|...|++.....+..+.-+..-..+ .+..-+-+.++. -..++..| ..
T Consensus 197 y~~~g~~~~ll~~l~~L~ka~~l~~-~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~ 275 (400)
T COG3071 197 YIRLGAWQALLAILPKLRKAGLLSD-EEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIR 275 (400)
T ss_pred HHHhccHHHHHHHHHHHHHccCCCh-HHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHH
Confidence 8888888877777666544321111 111111111111 00000000 01
Q ss_pred chhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 180 SHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
.+++++|.+..+++++..- ++.....++ ...-+++..=++..++.+...|++|..+..||.++++.+. |.+|..+|
T Consensus 276 l~~~~~A~~~i~~~Lk~~~-D~~L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~-w~kA~~~l 351 (400)
T COG3071 276 LGDHDEAQEIIEDALKRQW-DPRLCRLIP--RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKL-WGKASEAL 351 (400)
T ss_pred cCChHHHHHHHHHHHHhcc-ChhHHHHHh--hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhH-HHHHHHHH
Confidence 3467777777777776543 233222222 2355677777777888888889999999999999999999 99999998
Q ss_pred ----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhc
Q psy8160 260 ----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTS 290 (324)
Q Consensus 260 ----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~ 290 (324)
..|..+|.++.+.|+..+ |-++++.++.+
T Consensus 352 eaAl~~~~s~~~~~~la~~~~~~g~~~~--A~~~r~e~L~~ 390 (400)
T COG3071 352 EAALKLRPSASDYAELADALDQLGEPEE--AEQVRREALLL 390 (400)
T ss_pred HHHHhcCCChhhHHHHHHHHHHcCChHH--HHHHHHHHHHH
Confidence 778899999999999999 99999999843
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.3e-08 Score=99.57 Aligned_cols=255 Identities=9% Similarity=-0.070 Sum_probs=183.9
Q ss_pred HHHHHHHHHHhccCCCccc--chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCC------chhhHHHHHHHHhcccHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLR--ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASP------CTFTKLEGLMFKVNNEYD 101 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~------~~~~~~la~~~~~~~~~~ 101 (324)
++|...+.+++...|.... ...+...+|.++...|++++|...+.+++ ..... ......+|.++..+|+++
T Consensus 469 ~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~ 548 (903)
T PRK04841 469 EEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQ 548 (903)
T ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHH
Confidence 8999999999986554221 12356778999999999999999999998 42221 123345788999999999
Q ss_pred HHHHHHHHHHHhcCCCc----ccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC-CCchhhHHHHHHHHHHHhhhhh
Q psy8160 102 SALKHLTLCLIDASPCT----FTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDL-PVHLKADICRQLGWMYHCIDTL 176 (324)
Q Consensus 102 ~A~~~~~~~l~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~~~~ 176 (324)
+|...+++++....... .....++..+|.++...|++++|...+++++..... .......++..++.++..
T Consensus 549 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~---- 624 (903)
T PRK04841 549 AAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA---- 624 (903)
T ss_pred HHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH----
Confidence 99999999987533221 112234567789999999999999999999875421 111124455667777755
Q ss_pred cccchhHHHHHHHHHHHhhhCCccH---HHHH----HHHHHHHHcCCHHHHHHHHHHHHccCCCCHH----HHHHhHHHH
Q psy8160 177 GEKSHRETLAIHCLQKSIEADPKSG---QSLY----LLGRCFAAVGKVHDAFLAYRNSVEKSEGNAD----TWCSIGNKD 245 (324)
Q Consensus 177 ~~~~~~~~~A~~~~~~al~~~~~~~---~~~~----~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~lg~~~ 245 (324)
.|++++|...+.++....+... .... .....+...|+.+.|..++.......+.... .+..+|.++
T Consensus 625 ---~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 625 ---RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred ---cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 4589999999999976533221 1111 1224455689999999998887654333322 246789999
Q ss_pred hhcCCCHHHHHHHH-----------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChh
Q psy8160 246 FSNNSNREDYHQAL-----------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCK 295 (324)
Q Consensus 246 ~~~~~~~~~A~~~~-----------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (324)
...|+ +++|+..+ .++..+|.++...|+.++ |...+.+|+++.....
T Consensus 702 ~~~g~-~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~--A~~~L~~Al~la~~~g 765 (903)
T PRK04841 702 ILLGQ-FDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSE--AQRVLLEALKLANRTG 765 (903)
T ss_pred HHcCC-HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHHhCccc
Confidence 99999 99998888 467788999999999999 9999999999875543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.4e-11 Score=78.90 Aligned_cols=67 Identities=13% Similarity=0.232 Sum_probs=59.5
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcC-CCHHHHHHHHHHHHhhHHHHHHcCCCCcc
Q psy8160 200 SGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNN-SNREDYHQALNKYRDLGDFLVINNIPTSN 278 (324)
Q Consensus 200 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~-~~~~~A~~~~~~~~~lg~~~~~~~~~~~~ 278 (324)
++..|..+|.+++..|++++|+..|+++++.+|+++.+|+++|.++...| + +.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~------------------------~~~- 56 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKD------------------------YEE- 56 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTH------------------------HHH-
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCcc------------------------HHH-
Confidence 67899999999999999999999999999999999999999999999988 6 445
Q ss_pred hHHHHHHHhhhcCC
Q psy8160 279 NNRQCYNSYSTSIA 292 (324)
Q Consensus 279 ~A~~~~~~al~~~p 292 (324)
|+.+|+++++++|
T Consensus 57 -A~~~~~~al~l~P 69 (69)
T PF13414_consen 57 -AIEDFEKALKLDP 69 (69)
T ss_dssp -HHHHHHHHHHHST
T ss_pred -HHHHHHHHHHcCc
Confidence 7777777777776
|
... |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.1e-09 Score=84.80 Aligned_cols=106 Identities=17% Similarity=0.275 Sum_probs=81.4
Q ss_pred cHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCch-hhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCC
Q psy8160 120 TKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHL-KADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADP 198 (324)
Q Consensus 120 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 198 (324)
.....++.+|..+...|++++|+.+|++++... |+.. .+.++..+|.++.. .|++++|+.+++++++..|
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~la~~~~~-------~g~~~~A~~~~~~al~~~p 103 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLE--EDPNDRSYILYNMGIIYAS-------NGEHDKALEYYHQALELNP 103 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hccchHHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCc
Confidence 344567888888888888888888888888765 3321 14577888888866 4488888888888888888
Q ss_pred ccHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHccCCCC
Q psy8160 199 KSGQSLYLLGRCFAAVGK--------------VHDAFLAYRNSVEKSEGN 234 (324)
Q Consensus 199 ~~~~~~~~lg~~~~~~~~--------------~~~A~~~~~~al~~~p~~ 234 (324)
.++..+..+|.++...|+ +++|++.+++++..+|++
T Consensus 104 ~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 104 KQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred ccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 888888888888888776 577888888888888876
|
|
| >KOG2376|consensus | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.3e-07 Score=82.75 Aligned_cols=137 Identities=19% Similarity=0.171 Sum_probs=101.6
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhc--------------------
Q psy8160 55 LRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDA-------------------- 114 (324)
Q Consensus 55 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-------------------- 114 (324)
|.-+.|+++.+..++|+++++ ..++.+.....+.|.+++.+|+|++|+..|+..+...
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~--~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~ 160 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK--GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQ 160 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh--cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhh
Confidence 577888999999999999988 4566666788889999999999999999999985322
Q ss_pred -------CCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC-------CCC-Cchh---hHHHHHHHHHHHhhhhh
Q psy8160 115 -------SPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKED-------DLP-VHLK---ADICRQLGWMYHCIDTL 176 (324)
Q Consensus 115 -------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------~~~-~~~~---~~~~~~l~~~~~~~~~~ 176 (324)
|..+....+.+|+.|-++...|+|.+|++.+++++.+. +.. ...+ ..+..+++.++..
T Consensus 161 ~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~---- 236 (652)
T KOG2376|consen 161 VQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL---- 236 (652)
T ss_pred HHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH----
Confidence 22222345688999999999999999999999994431 101 1111 2345566666644
Q ss_pred cccchhHHHHHHHHHHHhhhCCcc
Q psy8160 177 GEKSHRETLAIHCLQKSIEADPKS 200 (324)
Q Consensus 177 ~~~~~~~~~A~~~~~~al~~~~~~ 200 (324)
.|+.++|...|...+..+|.+
T Consensus 237 ---~Gqt~ea~~iy~~~i~~~~~D 257 (652)
T KOG2376|consen 237 ---QGQTAEASSIYVDIIKRNPAD 257 (652)
T ss_pred ---hcchHHHHHHHHHHHHhcCCC
Confidence 448889999998888776654
|
|
| >KOG4340|consensus | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.3e-09 Score=84.66 Aligned_cols=250 Identities=14% Similarity=0.060 Sum_probs=184.0
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTL 109 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 109 (324)
..|++....-.+..|. +...+..||.||+...+|..|-.||++.- ..|........-+..+...+.+..|+.....
T Consensus 27 ~DaI~~l~s~~Er~p~---~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~ 103 (459)
T KOG4340|consen 27 ADAIQLLGSELERSPR---SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFL 103 (459)
T ss_pred HHHHHHHHHHHhcCcc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 7788888888888863 34468889999999999999999999998 8999888888889999999999999996665
Q ss_pred HHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHH
Q psy8160 110 CLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHC 189 (324)
Q Consensus 110 ~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~ 189 (324)
..+. .--..++...-+-+....+++..+....++. |..-.+....+.|.+.++ .|+++.|++-
T Consensus 104 ~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQl------p~en~Ad~~in~gCllyk-------egqyEaAvqk 166 (459)
T KOG4340|consen 104 LLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQL------PSENEADGQINLGCLLYK-------EGQYEAAVQK 166 (459)
T ss_pred hcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhc------cCCCccchhccchheeec-------cccHHHHHHH
Confidence 5432 1111133333355666777777776666554 432236788899988877 5599999999
Q ss_pred HHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc----CCCC-------------------------HHHHHH
Q psy8160 190 LQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEK----SEGN-------------------------ADTWCS 240 (324)
Q Consensus 190 ~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----~p~~-------------------------~~~~~~ 240 (324)
|+.+++..-.++-.-++++.+++..+++..|++.....++. .|.. .++...
T Consensus 167 FqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNL 246 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNL 246 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999988777653 3332 233444
Q ss_pred hHHHHhhcCCCHHHHHHHH-------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhh
Q psy8160 241 IGNKDFSNNSNREDYHQAL-------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFS 304 (324)
Q Consensus 241 lg~~~~~~~~~~~~A~~~~-------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 304 (324)
-+.++++.++ ++.|.+.+ .++.+++..- ..+++.+ ...-++-.+.++|=-+....|+.++
T Consensus 247 KaAIeyq~~n-~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~--g~~KLqFLL~~nPfP~ETFANlLll 319 (459)
T KOG4340|consen 247 KAAIEYQLRN-YEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTE--GFEKLQFLLQQNPFPPETFANLLLL 319 (459)
T ss_pred hhhhhhhccc-HHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccc--cHHHHHHHHhcCCCChHHHHHHHHH
Confidence 5677889999 99998888 4455554332 2345666 6666777777777444555555444
|
|
| >KOG1915|consensus | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.4e-07 Score=80.61 Aligned_cols=206 Identities=12% Similarity=0.002 Sum_probs=154.7
Q ss_pred cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccH-----HHHHHHHHHHH-HHhhcHHHHHHHHHHHHhcC
Q psy8160 79 IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTK-----LEVRFHIAHLH-EVQRKYKTAKDSYEQLLKED 152 (324)
Q Consensus 79 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~-----~~~~~~la~~~-~~~~~~~~A~~~~~~al~~~ 152 (324)
.+|.+...+...-.+-...|+.+.-.+.|++++...|+..... .-+|.+.+..- ....+.+.+.+.|+.++++-
T Consensus 317 ~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lI 396 (677)
T KOG1915|consen 317 KNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLI 396 (677)
T ss_pred hCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence 4777777777777777888999999999999998877743211 12333333211 24478899999999999987
Q ss_pred CCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q psy8160 153 DLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSE 232 (324)
Q Consensus 153 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 232 (324)
+......+.+|...+..... ..+...|...+-.|+...|.+.-. -..-.+-..+++++.....|++-++.+|
T Consensus 397 PHkkFtFaKiWlmyA~feIR-------q~~l~~ARkiLG~AIG~cPK~KlF-k~YIelElqL~efDRcRkLYEkfle~~P 468 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFEIR-------QLNLTGARKILGNAIGKCPKDKLF-KGYIELELQLREFDRCRKLYEKFLEFSP 468 (677)
T ss_pred CcccchHHHHHHHHHHHHHH-------HcccHHHHHHHHHHhccCCchhHH-HHHHHHHHHHhhHHHHHHHHHHHHhcCh
Confidence 22222234555555544433 347888999999999999976533 2223445677899999999999999999
Q ss_pred CCHHHHHHhHHHHhhcCCCHHHHHHHH-------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChh
Q psy8160 233 GNADTWCSIGNKDFSNNSNREDYHQAL-------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCK 295 (324)
Q Consensus 233 ~~~~~~~~lg~~~~~~~~~~~~A~~~~-------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (324)
.+..+|...|.+-..+|+ ++.|...| -.|...-..-...|.++. |...|++.|+..+..+
T Consensus 469 e~c~~W~kyaElE~~Lgd-tdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ek--aR~LYerlL~rt~h~k 541 (677)
T KOG1915|consen 469 ENCYAWSKYAELETSLGD-TDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEK--ARALYERLLDRTQHVK 541 (677)
T ss_pred HhhHHHHHHHHHHHHhhh-HHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHH--HHHHHHHHHHhcccch
Confidence 999999999999999999 99998888 455556666667889999 9999999999888765
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.4e-08 Score=80.93 Aligned_cols=211 Identities=14% Similarity=0.060 Sum_probs=166.1
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTL 109 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 109 (324)
+.|-.+..++-+..++. ...+....+.+....||++.|..-..+++ ..|.+.....+...+|...|++.+......+
T Consensus 135 ~~an~yL~eaae~~~~~--~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~ 212 (400)
T COG3071 135 DRANRYLAEAAELAGDD--TLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPK 212 (400)
T ss_pred HHHHHHHHHHhccCCCc--hHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 77888888888885542 23467888889999999999999999999 9999999999999999999999888877766
Q ss_pred HHHhcCCCcc--------------------------------------cHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc
Q psy8160 110 CLIDASPCTF--------------------------------------TKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKE 151 (324)
Q Consensus 110 ~l~~~~~~~~--------------------------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 151 (324)
.-+..--+.. ..+++...++.-+...|++++|.+..+++++.
T Consensus 213 L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~ 292 (400)
T COG3071 213 LRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR 292 (400)
T ss_pred HHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 5332111110 11234555566667788999999999998877
Q ss_pred CCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q psy8160 152 DDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKS 231 (324)
Q Consensus 152 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 231 (324)
. -+. ......+.+- .++...=++..++.+...|++|..+..||..++..+.|.+|..+|+.+++..
T Consensus 293 ~--~D~---~L~~~~~~l~---------~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~ 358 (400)
T COG3071 293 Q--WDP---RLCRLIPRLR---------PGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLR 358 (400)
T ss_pred c--cCh---hHHHHHhhcC---------CCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 6 332 2333333222 3377888888999999999999999999999999999999999999999998
Q ss_pred CCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 232 EGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 232 p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
| +...|..+|.++.+.|+ ...|.+++
T Consensus 359 ~-s~~~~~~la~~~~~~g~-~~~A~~~r 384 (400)
T COG3071 359 P-SASDYAELADALDQLGE-PEEAEQVR 384 (400)
T ss_pred C-ChhhHHHHHHHHHHcCC-hHHHHHHH
Confidence 8 46778999999999999 99998876
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.7e-09 Score=83.54 Aligned_cols=106 Identities=14% Similarity=0.178 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCch-hhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCc
Q psy8160 121 KLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHL-KADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPK 199 (324)
Q Consensus 121 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 199 (324)
....++.+|.++...|++++|+..|++++... |++. .+.++.++|.++.. .+++++|+.++++++.++|.
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~--~~~~~~~~~~~~lg~~~~~-------~g~~~eA~~~~~~Al~~~~~ 104 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE--IDPYDRSYILYNIGLIHTS-------NGEHTKALEYYFQALERNPF 104 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--ccchhhHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCcC
Confidence 34677888888888899999999999888776 4322 24578888888866 45888899999999888888
Q ss_pred cHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHccCCCCH
Q psy8160 200 SGQSLYLLGRCFA-------AVGKVH-------DAFLAYRNSVEKSEGNA 235 (324)
Q Consensus 200 ~~~~~~~lg~~~~-------~~~~~~-------~A~~~~~~al~~~p~~~ 235 (324)
....+..+|.++. ..|+++ +|+..|++++..+|.+.
T Consensus 105 ~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 105 LPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred cHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 8888888888887 667766 66666777778888653
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.2e-10 Score=76.07 Aligned_cols=99 Identities=25% Similarity=0.374 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHH
Q psy8160 124 VRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQS 203 (324)
Q Consensus 124 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 203 (324)
+++.+|.++...|++++|+..+++++... |.+. .++..+|.++.. .+++++|+.++++++...|.++.+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~--~~~~~~~~~~~~-------~~~~~~a~~~~~~~~~~~~~~~~~ 70 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD--PDNA--DAYYNLAAAYYK-------LGKYEEALEDYEKALELDPDNAKA 70 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC--CccH--HHHHHHHHHHHH-------HHHHHHHHHHHHHHHhCCCcchhH
Confidence 46778888888999999999999988887 6653 478888888866 448888999999999888888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q psy8160 204 LYLLGRCFAAVGKVHDAFLAYRNSVEKSEG 233 (324)
Q Consensus 204 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 233 (324)
+..+|.++...|++++|...+.+++..+|.
T Consensus 71 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 71 YYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 899999999999999999999998887763
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.9e-11 Score=79.93 Aligned_cols=78 Identities=23% Similarity=0.304 Sum_probs=69.8
Q ss_pred chhHHHHHHHHHHHhhhCCc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHH
Q psy8160 180 SHRETLAIHCLQKSIEADPK--SGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQ 257 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~ 257 (324)
.++++.|+.+++++++.+|. +...++.+|.|++..|++++|+..+++ ...+|.++..++.+|.|+..+|+ +++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~-y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGK-YEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT--HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCC-HHHHHH
Confidence 35899999999999999995 567788899999999999999999999 88999999999999999999999 999998
Q ss_pred HH
Q psy8160 258 AL 259 (324)
Q Consensus 258 ~~ 259 (324)
.|
T Consensus 80 ~l 81 (84)
T PF12895_consen 80 AL 81 (84)
T ss_dssp HH
T ss_pred HH
Confidence 76
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.16 E-value=5e-10 Score=81.13 Aligned_cols=95 Identities=13% Similarity=0.123 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHhHHHHhhcCCCHHHHHHHH--------------HHHHh
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN---ADTWCSIGNKDFSNNSNREDYHQAL--------------NKYRD 264 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~~A~~~~--------------~~~~~ 264 (324)
++++.+|..+...|++++|+..|.+++..+|++ +.+++.+|.++...|+ +++|+..| .++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGK-YADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 445556666666666666666666666555544 3455556666666666 66666555 34666
Q ss_pred hHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhh
Q psy8160 265 LGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINN 299 (324)
Q Consensus 265 lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 299 (324)
+|.++...+++++ |+..|+++++..|+++.+..
T Consensus 82 ~~~~~~~~~~~~~--A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 82 LGMSLQELGDKEK--AKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHHhCChHH--HHHHHHHHHHHCcCChhHHH
Confidence 6777777777888 99999999999999876543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.9e-08 Score=97.19 Aligned_cols=251 Identities=12% Similarity=-0.008 Sum_probs=180.4
Q ss_pred HHHHHHHHHHhccCCCc------ccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCch-----hhHHHHHHHHhcc
Q psy8160 31 IKAIKTFQQLLYVDPSY------LRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCT-----FTKLEGLMFKVNN 98 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~-----~~~~la~~~~~~~ 98 (324)
++|...+..+....+.. .....+...+|.++...|+++.|..++++++ ..+.... +...+|.++...|
T Consensus 426 ~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G 505 (903)
T PRK04841 426 SEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG 505 (903)
T ss_pred HHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC
Confidence 88888888876543221 1123455667889999999999999999998 5444332 3345788889999
Q ss_pred cHHHHHHHHHHHHHhcCCCc--ccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC---CC-chhhHHHHHHHHHHHh
Q psy8160 99 EYDSALKHLTLCLIDASPCT--FTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDL---PV-HLKADICRQLGWMYHC 172 (324)
Q Consensus 99 ~~~~A~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---~~-~~~~~~~~~l~~~~~~ 172 (324)
++++|...+++++....... .....+...+|.++...|+++.|...+++++..... +. .....++..+|.++..
T Consensus 506 ~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 585 (903)
T PRK04841 506 ELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWE 585 (903)
T ss_pred CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 99999999999986543322 123346678899999999999999999999875311 11 1112345566777755
Q ss_pred hhhhcccchhHHHHHHHHHHHhhhCCc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHH----
Q psy8160 173 IDTLGEKSHRETLAIHCLQKSIEADPK-----SGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN---ADTWCS---- 240 (324)
Q Consensus 173 ~~~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~---- 240 (324)
.|++++|...+.+++..... ....+..+|.++...|++++|...+.++..+.+.. ...+..
T Consensus 586 -------~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~ 658 (903)
T PRK04841 586 -------WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKV 658 (903)
T ss_pred -------hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHH
Confidence 45999999999999875321 24566778999999999999999999997653322 111111
Q ss_pred hHHHHhhcCCCHHHHHHHH---------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcC
Q psy8160 241 IGNKDFSNNSNREDYHQAL---------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSI 291 (324)
Q Consensus 241 lg~~~~~~~~~~~~A~~~~---------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~ 291 (324)
....+...|+ .+.|...+ ..+..+|.++...|++++ |...+++++...
T Consensus 659 ~~~~~~~~g~-~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~--A~~~l~~al~~~ 721 (903)
T PRK04841 659 RLIYWQMTGD-KEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDE--AEIILEELNENA 721 (903)
T ss_pred HHHHHHHCCC-HHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHHH
Confidence 2244455788 88888776 225688999999999999 999999998863
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.8e-09 Score=78.83 Aligned_cols=121 Identities=21% Similarity=0.201 Sum_probs=88.7
Q ss_pred cccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCc-hhhHHHHHHHHHHHhhhh
Q psy8160 97 NNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVH-LKADICRQLGWMYHCIDT 175 (324)
Q Consensus 97 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~l~~~~~~~~~ 175 (324)
.++...+...++..+...|.+.. ...+.+.+|.++...|++++|+..|+.++... |+. ....+..+++.++..
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~y-a~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~--~d~~l~~~a~l~LA~~~~~--- 97 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPY-AALAALQLAKAAYEQGDYDEAKAALEKALANA--PDPELKPLARLRLARILLQ--- 97 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHH---
Confidence 56666666667777766665532 23567778888888888888888888888766 332 335577777888766
Q ss_pred hcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy8160 176 LGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSV 228 (324)
Q Consensus 176 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 228 (324)
.+++++|+..++. +...+..+.++..+|.++...|++++|+..|++|+
T Consensus 98 ----~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 98 ----QGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred ----cCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 4588888888866 34445566778888888888888888888888874
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.4e-10 Score=73.14 Aligned_cols=64 Identities=23% Similarity=0.388 Sum_probs=56.9
Q ss_pred HHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q psy8160 165 QLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNA 235 (324)
Q Consensus 165 ~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 235 (324)
.+|..++. .|++++|+..|+++++.+|.++.+|+.+|.++..+|++++|+..|+++++.+|++|
T Consensus 2 ~~a~~~~~-------~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQ-------QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHH-------CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHH-------cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 45666666 56999999999999999999999999999999999999999999999999999875
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.8e-09 Score=88.53 Aligned_cols=150 Identities=18% Similarity=0.210 Sum_probs=94.0
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Q psy8160 51 NEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIA 129 (324)
Q Consensus 51 ~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la 129 (324)
..++|..+..++..|+++.|+..++..+ ..|+|..+....+.++...++..+|.+.+++++...|... -+..++|
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~----~l~~~~a 381 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSP----LLQLNLA 381 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc----HHHHHHH
Confidence 3456666777777777777777777666 6677766666666666666666666666666666666654 4566666
Q ss_pred HHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHH
Q psy8160 130 HLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGR 209 (324)
Q Consensus 130 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~ 209 (324)
..+...|++.+|+..++..+..+ |++ +..|..++..|-. .| +...+....+.
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~--p~d--p~~w~~LAqay~~---~g---------------------~~~~a~~A~AE 433 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFND--PED--PNGWDLLAQAYAE---LG---------------------NRAEALLARAE 433 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcC--CCC--chHHHHHHHHHHH---hC---------------------chHHHHHHHHH
Confidence 66666666666666666666666 655 3366666666632 12 22233344455
Q ss_pred HHHHcCCHHHHHHHHHHHHccCC
Q psy8160 210 CFAAVGKVHDAFLAYRNSVEKSE 232 (324)
Q Consensus 210 ~~~~~~~~~~A~~~~~~al~~~p 232 (324)
.++..|++++|+..+..+.+...
T Consensus 434 ~~~~~G~~~~A~~~l~~A~~~~~ 456 (484)
T COG4783 434 GYALAGRLEQAIIFLMRASQQVK 456 (484)
T ss_pred HHHhCCCHHHHHHHHHHHHHhcc
Confidence 66666666666666666665553
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.5e-09 Score=80.40 Aligned_cols=115 Identities=17% Similarity=0.116 Sum_probs=74.0
Q ss_pred HhhcHHHHHHHHHHHHhcCCCCCch-hhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc---HHHHHHHHH
Q psy8160 134 VQRKYKTAKDSYEQLLKEDDLPVHL-KADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS---GQSLYLLGR 209 (324)
Q Consensus 134 ~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~lg~ 209 (324)
..++...+...++..+... |+.. ...+...+|.+++. .|++++|+..|++++...|+. +.+.+.+|.
T Consensus 23 ~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~-------~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYE-------QGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 4667777777777777766 5542 23455566666655 447777777777777766443 246667777
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 210 CFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 210 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
++...|++++|+..++. +...+-.+.++..+|+++...|+ +++|+..|
T Consensus 94 ~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~-~~~A~~~y 141 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGD-YDEARAAY 141 (145)
T ss_pred HHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCC-HHHHHHHH
Confidence 77777777777777755 23334445566666777777777 66666554
|
|
| >KOG2376|consensus | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.2e-08 Score=87.54 Aligned_cols=227 Identities=17% Similarity=0.125 Sum_probs=152.5
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLC 110 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 110 (324)
++|++...+++...|+. ..+...--.+.++.+.|++|++..+.-..+.......+..+-+.+..+..++|++.++ .
T Consensus 29 e~a~k~~~Kil~~~pdd---~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~-~ 104 (652)
T KOG2376|consen 29 EEAVKTANKILSIVPDD---EDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK-G 104 (652)
T ss_pred HHHHHHHHHHHhcCCCc---HhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh-c
Confidence 99999999999999863 3355666678889999999996655433222222233567889999999999999887 2
Q ss_pred HHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHH
Q psy8160 111 LIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCL 190 (324)
Q Consensus 111 l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~ 190 (324)
++ +.+. -+....|.++..+++|++|++.|+.++..+ .++.+ .......+-.. ---.+ . .
T Consensus 105 ~~--~~~~----~ll~L~AQvlYrl~~ydealdiY~~L~kn~--~dd~d--~~~r~nl~a~~---------a~l~~-~-~ 163 (652)
T KOG2376|consen 105 LD--RLDD----KLLELRAQVLYRLERYDEALDIYQHLAKNN--SDDQD--EERRANLLAVA---------AALQV-Q-L 163 (652)
T ss_pred cc--ccch----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CchHH--HHHHHHHHHHH---------HhhhH-H-H
Confidence 22 2221 356667899999999999999999988776 55433 33333332211 11111 1 4
Q ss_pred HHHhhhCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCH-HHHHHHH-HHHHhhHH
Q psy8160 191 QKSIEADPK-SGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNR-EDYHQAL-NKYRDLGD 267 (324)
Q Consensus 191 ~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~-~~A~~~~-~~~~~lg~ 267 (324)
.+.....|. +.+.+|+.+.++...|+|.+|++.+++|+.+.... +..+++- ++-..-+ .+...|+.
T Consensus 164 ~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~-----------l~~~d~~eEeie~el~~IrvQlay 232 (652)
T KOG2376|consen 164 LQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREK-----------LEDEDTNEEEIEEELNPIRVQLAY 232 (652)
T ss_pred HHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHh-----------hcccccchhhHHHHHHHHHHHHHH
Confidence 444555554 56889999999999999999999999996543210 0111100 1111111 45566788
Q ss_pred HHHHcCCCCcchHHHHHHHhhhcCCChh
Q psy8160 268 FLVINNIPTSNNNRQCYNSYSTSIASCK 295 (324)
Q Consensus 268 ~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (324)
++..+|+..+ |...|...++.+|-|.
T Consensus 233 VlQ~~Gqt~e--a~~iy~~~i~~~~~D~ 258 (652)
T KOG2376|consen 233 VLQLQGQTAE--ASSIYVDIIKRNPADE 258 (652)
T ss_pred HHHHhcchHH--HHHHHHHHHHhcCCCc
Confidence 8888888888 9999999988887765
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.9e-10 Score=76.83 Aligned_cols=83 Identities=33% Similarity=0.488 Sum_probs=67.9
Q ss_pred hhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHc
Q psy8160 135 QRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAV 214 (324)
Q Consensus 135 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 214 (324)
+|+++.|+..|+++++.. |.+.....++.+|.+++. .+++++|+..+++ ...+|.++...+.+|.|+..+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~--~~~~~~~~~~~la~~~~~-------~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l 71 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELD--PTNPNSAYLYNLAQCYFQ-------QGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKL 71 (84)
T ss_dssp TT-HHHHHHHHHHHHHHH--CGTHHHHHHHHHHHHHHH-------TTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHHHH-------CCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHh
Confidence 578999999999999888 643245578888999988 5589999999999 778888888888889999999
Q ss_pred CCHHHHHHHHHHH
Q psy8160 215 GKVHDAFLAYRNS 227 (324)
Q Consensus 215 ~~~~~A~~~~~~a 227 (324)
|++++|+..++++
T Consensus 72 ~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 72 GKYEEAIKALEKA 84 (84)
T ss_dssp T-HHHHHHHHHHH
T ss_pred CCHHHHHHHHhcC
Confidence 9999999998875
|
|
| >KOG3785|consensus | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.4e-08 Score=81.43 Aligned_cols=237 Identities=11% Similarity=0.014 Sum_probs=147.5
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchh------------------------
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTF------------------------ 86 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~------------------------ 86 (324)
++|+..|.-+...+. .+.++...|+.|++..|.|.+|...-.++-..|-..+.
T Consensus 74 ~~Al~~Y~~~~~~~~---~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~ 150 (557)
T KOG3785|consen 74 EEALNVYTFLMNKDD---APAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT 150 (557)
T ss_pred HHHHHHHHHHhccCC---CCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh
Confidence 999999998887442 24678999999999999999998876655322211111
Q ss_pred ---hHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHH
Q psy8160 87 ---TKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADIC 163 (324)
Q Consensus 87 ---~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 163 (324)
...+|.+....-.|.+|+..|++++..+|.-. .+-..+|.||..+.-++.+.+.+.--+... |++.. +.
T Consensus 151 ~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~----alNVy~ALCyyKlDYydvsqevl~vYL~q~--pdSti--A~ 222 (557)
T KOG3785|consen 151 LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYI----ALNVYMALCYYKLDYYDVSQEVLKVYLRQF--PDSTI--AK 222 (557)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhh----hhHHHHHHHHHhcchhhhHHHHHHHHHHhC--CCcHH--HH
Confidence 11145555566667777777777776665543 445566777777777777777776666666 66533 44
Q ss_pred HHHHHHHHhhhhhcccchhHHHHHHHHHHHhhh-C---Cc----------------------------cHHHHHHHHHHH
Q psy8160 164 RQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEA-D---PK----------------------------SGQSLYLLGRCF 211 (324)
Q Consensus 164 ~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~---~~----------------------------~~~~~~~lg~~~ 211 (324)
...+...++.- .|+. |..-....... + |. -|++..+|...|
T Consensus 223 NLkacn~fRl~-----ngr~--ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYy 295 (557)
T KOG3785|consen 223 NLKACNLFRLI-----NGRT--AEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYY 295 (557)
T ss_pred HHHHHHHhhhh-----ccch--hHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeee
Confidence 44443333311 1122 22222222111 1 10 025666777778
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHH-------HHHH-------------------------
Q psy8160 212 AAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDY-------HQAL------------------------- 259 (324)
Q Consensus 212 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A-------~~~~------------------------- 259 (324)
..+++.++|+.... +++|..|.-+..-|.++...|+ -... .+.|
T Consensus 296 L~q~dVqeA~~L~K---dl~PttP~EyilKgvv~aalGQ-e~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL 371 (557)
T KOG3785|consen 296 LNQNDVQEAISLCK---DLDPTTPYEYILKGVVFAALGQ-ETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFL 371 (557)
T ss_pred cccccHHHHHHHHh---hcCCCChHHHHHHHHHHHHhhh-hcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHH
Confidence 88888888887663 5788888777777777777766 3322 2222
Q ss_pred ----------------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcC
Q psy8160 260 ----------------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSI 291 (324)
Q Consensus 260 ----------------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~ 291 (324)
...++++..+...|++.+ |.+.|-+....+
T Consensus 372 ~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~e--aEelf~~is~~~ 423 (557)
T KOG3785|consen 372 SFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVE--AEELFIRISGPE 423 (557)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHH--HHHHHhhhcChh
Confidence 444678888888888888 888877665433
|
|
| >KOG1915|consensus | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.9e-07 Score=78.01 Aligned_cols=144 Identities=14% Similarity=0.046 Sum_probs=98.9
Q ss_pred HHHhhhhccccccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCC
Q psy8160 6 QKNLVEGIVTSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDAS 82 (324)
Q Consensus 6 ~~~~~~~~~~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~ 82 (324)
+.+|-.+..+-..+...++...... ..|.+.|+++|..+- .+..++...+.+-.+......|...+.+|+ +-|.
T Consensus 63 Ed~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~---r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR 139 (677)
T KOG1915|consen 63 EDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDY---RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR 139 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc---ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch
Confidence 3444444555555555555544444 889999999998883 456688888888888889999999999999 8888
Q ss_pred CchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcc----------------------------cHHHHHHHHHHHHHH
Q psy8160 83 PCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTF----------------------------TKLEVRFHIAHLHEV 134 (324)
Q Consensus 83 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~----------------------------~~~~~~~~la~~~~~ 134 (324)
-..+++--..+-...|+...|...|++-+.-.|+..- .+...|...+..-..
T Consensus 140 VdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k 219 (677)
T KOG1915|consen 140 VDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEK 219 (677)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHh
Confidence 8877777666666778888888888777766555321 011244444555556
Q ss_pred hhcHHHHHHHHHHHHhcC
Q psy8160 135 QRKYKTAKDSYEQLLKED 152 (324)
Q Consensus 135 ~~~~~~A~~~~~~al~~~ 152 (324)
.|+...|...|.++++.-
T Consensus 220 ~g~~~~aR~VyerAie~~ 237 (677)
T KOG1915|consen 220 HGNVALARSVYERAIEFL 237 (677)
T ss_pred cCcHHHHHHHHHHHHHHh
Confidence 666667777777776554
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-09 Score=91.34 Aligned_cols=224 Identities=15% Similarity=0.059 Sum_probs=108.7
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Q psy8160 51 NEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAH 130 (324)
Q Consensus 51 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~ 130 (324)
.+..+.+.+++..+|+++..+..... ..+....+...++..+...++.+.++..++..+...... ....+....|.
T Consensus 35 ~e~~~~~~Rs~iAlg~~~~vl~ei~~--~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~--~~~~~~~~~A~ 110 (290)
T PF04733_consen 35 LERDFYQYRSYIALGQYDSVLSEIKK--SSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGE--SNEIVQLLAAT 110 (290)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHS-T--TSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS-----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhHHHHHhcc--CCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhcccc--ccHHHHHHHHH
Confidence 34455556666666665544433221 122223333444554444444445554444333221111 11122333355
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHH
Q psy8160 131 LHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRC 210 (324)
Q Consensus 131 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~ 210 (324)
++...|++++|+..+.+. .+.+ +....-.++.. +++++.|.+.++...+.++++.-+....+++
T Consensus 111 i~~~~~~~~~AL~~l~~~-------~~lE--~~al~Vqi~L~-------~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv 174 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG-------GSLE--LLALAVQILLK-------MNRPDLAEKELKNMQQIDEDSILTQLAEAWV 174 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT-------TCHH--HHHHHHHHHHH-------TT-HHHHHHHHHHHHCCSCCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcc-------Cccc--HHHHHHHHHHH-------cCCHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 555556666555554332 1112 33333334433 3366666666666655555444333333444
Q ss_pred HHHcC--CHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhh
Q psy8160 211 FAAVG--KVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYS 288 (324)
Q Consensus 211 ~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al 288 (324)
.+..| ++.+|.-.|+...+..+.++..+..++.++..+|+ +++ |.+.+++++
T Consensus 175 ~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~------------------------~~e--Ae~~L~~al 228 (290)
T PF04733_consen 175 NLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGH------------------------YEE--AEELLEEAL 228 (290)
T ss_dssp HHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-------------------------HHH--HHHHHHHHC
T ss_pred HHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC------------------------HHH--HHHHHHHHH
Confidence 44433 35666666666555555555555555555555555 666 778888899
Q ss_pred hcCCChhhhhhchhhhccCCh---hhHHHHHHHHh
Q psy8160 289 TSIASCKHINNNKDFSNNSNR---EDYHQALNKYR 320 (324)
Q Consensus 289 ~~~p~~~~~~~~l~~~~~~~~---~~~~~a~~~~~ 320 (324)
+.+|++|....|+........ ....+.++.++
T Consensus 229 ~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 229 EKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp CC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 999999998888766544222 22444554443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.5e-09 Score=74.71 Aligned_cols=96 Identities=21% Similarity=0.256 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Q psy8160 53 VHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHL 131 (324)
Q Consensus 53 ~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~ 131 (324)
+++.+|.++...|++++|+..+++++ ..|.+..++..+|.++...+++++|++.+++++...|... .++..+|.+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~~~ 77 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA----KAYYNLGLA 77 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch----hHHHHHHHH
Confidence 57889999999999999999999999 8888888888899999999999999999999998877765 788999999
Q ss_pred HHHhhcHHHHHHHHHHHHhcC
Q psy8160 132 HEVQRKYKTAKDSYEQLLKED 152 (324)
Q Consensus 132 ~~~~~~~~~A~~~~~~al~~~ 152 (324)
+...|++++|...+.+++...
T Consensus 78 ~~~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 78 YYKLGKYEEALEAYEKALELD 98 (100)
T ss_pred HHHHHhHHHHHHHHHHHHccC
Confidence 999999999999999998776
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.12 E-value=5e-09 Score=84.99 Aligned_cols=124 Identities=15% Similarity=0.074 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhccc
Q psy8160 100 YDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEK 179 (324)
Q Consensus 100 ~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 179 (324)
.+.-+.-.+.-+..+|.+. +-|..||.+|..+|++..|...|.+++.+. |++ ++.+..+|.+++....
T Consensus 138 ~~~l~a~Le~~L~~nP~d~----egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n--~~~~~g~aeaL~~~a~---- 205 (287)
T COG4235 138 MEALIARLETHLQQNPGDA----EGWDLLGRAYMALGRASDALLAYRNALRLA--GDN--PEILLGLAEALYYQAG---- 205 (287)
T ss_pred HHHHHHHHHHHHHhCCCCc----hhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCC--HHHHHHHHHHHHHhcC----
Confidence 4445555666777888876 889999999999999999999999999999 887 5588888888866432
Q ss_pred chhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q psy8160 180 SHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNA 235 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 235 (324)
.....++...+++++..+|.+..+.+.||..++..|+|.+|+..++..++..|.+.
T Consensus 206 ~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 206 QQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred CcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 33677899999999999999999999999999999999999999999999887653
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.4e-10 Score=73.20 Aligned_cols=65 Identities=15% Similarity=0.306 Sum_probs=57.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHH
Q psy8160 205 YLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCY 284 (324)
Q Consensus 205 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~ 284 (324)
+.+|..++..|++++|+..|++++..+|+++++|+.+|.++...|+ +++ |+..|
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~------------------------~~~--A~~~~ 54 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGR------------------------YDE--ALAYY 54 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-------------------------HHH--HHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC------------------------HHH--HHHHH
Confidence 4689999999999999999999999999999999999999998888 555 78888
Q ss_pred HHhhhcCCChh
Q psy8160 285 NSYSTSIASCK 295 (324)
Q Consensus 285 ~~al~~~p~~~ 295 (324)
+++++.+|++|
T Consensus 55 ~~a~~~~P~~p 65 (65)
T PF13432_consen 55 ERALELDPDNP 65 (65)
T ss_dssp HHHHHHSTT-H
T ss_pred HHHHHHCcCCC
Confidence 89999999876
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.7e-08 Score=86.96 Aligned_cols=160 Identities=13% Similarity=0.073 Sum_probs=127.3
Q ss_pred HHHHHHHHHhh---cHHHHHHHHHHHH---hcCCCCCchhhHHHHHHHHHHHhhhhhcc--cchhHHHHHHHHHHHhhhC
Q psy8160 126 FHIAHLHEVQR---KYKTAKDSYEQLL---KEDDLPVHLKADICRQLGWMYHCIDTLGE--KSHRETLAIHCLQKSIEAD 197 (324)
Q Consensus 126 ~~la~~~~~~~---~~~~A~~~~~~al---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~A~~~~~~al~~~ 197 (324)
+..|..+...+ ..+.|+.+|.+++ .++ |.. +.++..+++++......|. ......+|....+++++++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ld--p~~--a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld 334 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQ--TLK--TECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT 334 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCC--ccc--HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC
Confidence 55565554443 4678899999999 778 877 6699999999976543332 3457788999999999999
Q ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH------------HHHHhh
Q psy8160 198 PKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL------------NKYRDL 265 (324)
Q Consensus 198 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~------------~~~~~l 265 (324)
|.++.++..+|.+....++++.|+..|++|+.++|+.+.+|+..|.+..-.|+ .++|+... ..-..+
T Consensus 335 ~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~-~~~a~~~i~~alrLsP~~~~~~~~~~ 413 (458)
T PRK11906 335 TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEK-IEEARICIDKSLQLEPRRRKAVVIKE 413 (458)
T ss_pred CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC-HHHHHHHHHHHhccCchhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 99999888 112222
Q ss_pred HH-HHHHcCCCCcchHHHHHHHhhhcCCC
Q psy8160 266 GD-FLVINNIPTSNNNRQCYNSYSTSIAS 293 (324)
Q Consensus 266 g~-~~~~~~~~~~~~A~~~~~~al~~~p~ 293 (324)
-. .|... -.++ |+..|-+-.+....
T Consensus 414 ~~~~~~~~-~~~~--~~~~~~~~~~~~~~ 439 (458)
T PRK11906 414 CVDMYVPN-PLKN--NIKLYYKETESESH 439 (458)
T ss_pred HHHHHcCC-chhh--hHHHHhhccccccc
Confidence 22 44443 3677 89888876665443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.7e-09 Score=87.58 Aligned_cols=112 Identities=17% Similarity=0.243 Sum_probs=94.9
Q ss_pred hHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCC--HHHHHHHH
Q psy8160 182 RETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSN--REDYHQAL 259 (324)
Q Consensus 182 ~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~--~~~A~~~~ 259 (324)
..+.-+.-++..+..+|++.+.|..||.+|+.+|++..|...|++|+++.|++++.+..+|.+++..... ..++...+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 5777888899999999999999999999999999999999999999999999999999999887654331 34455555
Q ss_pred -----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChh
Q psy8160 260 -----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCK 295 (324)
Q Consensus 260 -----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (324)
.+.+.||..+...|++.+ |+..++..++..|.+.
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~--A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAE--AAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHH--HHHHHHHHHhcCCCCC
Confidence 777888888888888888 8888888888777654
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.2e-09 Score=92.61 Aligned_cols=135 Identities=10% Similarity=-0.004 Sum_probs=111.2
Q ss_pred CCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcC--------CHHHHHHHHHH
Q psy8160 155 PVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVG--------KVHDAFLAYRN 226 (324)
Q Consensus 155 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~--------~~~~A~~~~~~ 226 (324)
|.+..+..++..|+-+..... .+....|+.+|+++++++|+++.++-.++.++.... +...+....++
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~----~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGD----AKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 555556667777766644221 336889999999999999999999999888876542 24456666777
Q ss_pred HHcc--CCCCHHHHHHhHHHHhhcCCCHHHHHHHH----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCCh
Q psy8160 227 SVEK--SEGNADTWCSIGNKDFSNNSNREDYHQAL----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASC 294 (324)
Q Consensus 227 al~~--~p~~~~~~~~lg~~~~~~~~~~~~A~~~~----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (324)
++.+ +|.++.++..+|..+...|+ +++|...+ .+|..+|.++...|++++ |++.|++|+.++|.+
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~-~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~e--A~~~~~~A~~L~P~~ 486 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGK-TDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRL--AADAYSTAFNLRPGE 486 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHH--HHHHHHHHHhcCCCC
Confidence 6664 78888999999999999999 99999999 789999999999999999 999999999999998
Q ss_pred hh
Q psy8160 295 KH 296 (324)
Q Consensus 295 ~~ 296 (324)
|.
T Consensus 487 pt 488 (517)
T PRK10153 487 NT 488 (517)
T ss_pred ch
Confidence 85
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.3e-09 Score=80.85 Aligned_cols=77 Identities=10% Similarity=-0.070 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 182 RETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 182 ~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
++++|..+|+-....+|.+++.|..||.|+...++|++|+..|..+..+++++|...+..|.||..+|+ ...|+.+|
T Consensus 52 k~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~-~~~A~~~f 128 (165)
T PRK15331 52 RLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK-AAKARQCF 128 (165)
T ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC-HHHHHHHH
Confidence 555555555555555555555555555555555555555555555555555555555555555555555 44444443
|
|
| >KOG4340|consensus | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.3e-08 Score=81.92 Aligned_cols=202 Identities=11% Similarity=0.024 Sum_probs=154.5
Q ss_pred HHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHH
Q psy8160 62 KVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKT 140 (324)
Q Consensus 62 ~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 140 (324)
++..+|+.|++++..-. ..|.+......+|.+|....+|..|..+|++.-...|... .-.+..+..+.+.+.+..
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~----qYrlY~AQSLY~A~i~AD 96 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELE----QYRLYQAQSLYKACIYAD 96 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHH----HHHHHHHHHHHHhcccHH
Confidence 67789999999999888 8898989999999999999999999999999987766643 344455778888899999
Q ss_pred HHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCC--ccHHHHHHHHHHHHHcCCHH
Q psy8160 141 AKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADP--KSGQSLYLLGRCFAAVGKVH 218 (324)
Q Consensus 141 A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~lg~~~~~~~~~~ 218 (324)
|+.......+. |. ....+...-+-+.+. .+++..+....+ .-| ++++...+.|-+.++.|+++
T Consensus 97 ALrV~~~~~D~---~~-L~~~~lqLqaAIkYs-------e~Dl~g~rsLve----Qlp~en~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 97 ALRVAFLLLDN---PA-LHSRVLQLQAAIKYS-------EGDLPGSRSLVE----QLPSENEADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHHHHHHhcCC---HH-HHHHHHHHHHHHhcc-------cccCcchHHHHH----hccCCCccchhccchheeeccccHH
Confidence 88877665432 21 222222222222222 224444444443 334 56788899999999999999
Q ss_pred HHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH---------------------------------------
Q psy8160 219 DAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL--------------------------------------- 259 (324)
Q Consensus 219 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~--------------------------------------- 259 (324)
.|++-|+.|++..--+|-.-++++.++++.++ +..|++..
T Consensus 162 aAvqkFqaAlqvsGyqpllAYniALaHy~~~q-yasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal 240 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPLLAYNLALAHYSSRQ-YASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL 240 (459)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHHHHHhhhh-HHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHH
Confidence 99999999999999999999999999999999 99999887
Q ss_pred -HHHHhhHHHHHHcCCCCcchHHHHHH
Q psy8160 260 -NKYRDLGDFLVINNIPTSNNNRQCYN 285 (324)
Q Consensus 260 -~~~~~lg~~~~~~~~~~~~~A~~~~~ 285 (324)
+++...+.++.+.++++. |.+.+.
T Consensus 241 ~eAfNLKaAIeyq~~n~eA--A~eaLt 265 (459)
T KOG4340|consen 241 VEAFNLKAAIEYQLRNYEA--AQEALT 265 (459)
T ss_pred HHHhhhhhhhhhhcccHHH--HHHHhh
Confidence 455556677888888888 776654
|
|
| >KOG1941|consensus | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.7e-08 Score=81.40 Aligned_cols=227 Identities=14% Similarity=0.053 Sum_probs=111.5
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHh--cCCCCchh--hHHHHHHHHhcccHHHHHHHHHHHHHhcCC--CcccHHHHHHH
Q psy8160 54 HLRLGLMFKVNNEYDSALKHLTLCL--IDASPCTF--TKLEGLMFKVNNEYDSALKHLTLCLIDASP--CTFTKLEVRFH 127 (324)
Q Consensus 54 ~~~lg~~~~~~~~~~~A~~~~~~al--~~~~~~~~--~~~la~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~~~~~ 127 (324)
+..-|.-.+...++++|+..+.+.+ .+....++ +..+......+|.|++++.+--..+..... +.....+++.+
T Consensus 9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~ln 88 (518)
T KOG1941|consen 9 QIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLN 88 (518)
T ss_pred HHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555 22111111 111344555555555555543333222111 11122345556
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHhcCCCCC-chhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH-----
Q psy8160 128 IAHLHEVQRKYKTAKDSYEQLLKEDDLPV-HLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG----- 201 (324)
Q Consensus 128 la~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~----- 201 (324)
++..+...-++.+++.+-+-.+...+... .....+..-+|..+.. .+.++++++.|++++.....+.
T Consensus 89 lar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlg-------ls~fq~~Lesfe~A~~~A~~~~D~~LE 161 (518)
T KOG1941|consen 89 LARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLG-------LSVFQKALESFEKALRYAHNNDDAMLE 161 (518)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhh-------HHHHHHHHHHHHHHHHHhhccCCceee
Confidence 66666666666666655555444432111 1112233334444433 3356666666666655433222
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC----------HHHHHHhHHHHhhcCCCHHHHHHHH-----------
Q psy8160 202 -QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN----------ADTWCSIGNKDFSNNSNREDYHQAL----------- 259 (324)
Q Consensus 202 -~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----------~~~~~~lg~~~~~~~~~~~~A~~~~----------- 259 (324)
.++..||..+-...++++|+-+..+|.++-... ..+.+.++..+..+|. .-+|.++.
T Consensus 162 lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~-LgdA~e~C~Ea~klal~~G 240 (518)
T KOG1941|consen 162 LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGR-LGDAMECCEEAMKLALQHG 240 (518)
T ss_pred eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHHHhC
Confidence 445566666666666666666666665543221 2234555666666666 66665555
Q ss_pred ------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhc
Q psy8160 260 ------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTS 290 (324)
Q Consensus 260 ------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~ 290 (324)
.....+|++|...|+.+. |..-|+.|...
T Consensus 241 dra~~arc~~~~aDIyR~~gd~e~--af~rYe~Am~~ 275 (518)
T KOG1941|consen 241 DRALQARCLLCFADIYRSRGDLER--AFRRYEQAMGT 275 (518)
T ss_pred ChHHHHHHHHHHHHHHHhcccHhH--HHHHHHHHHHH
Confidence 334456666666666666 66666666543
|
|
| >KOG0543|consensus | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.7e-09 Score=89.59 Aligned_cols=112 Identities=11% Similarity=0.041 Sum_probs=90.5
Q ss_pred HHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc-------H--------HHHHHHHHHHHHcCCHHHHHHHHHH
Q psy8160 162 ICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS-------G--------QSLYLLGRCFAAVGKVHDAFLAYRN 226 (324)
Q Consensus 162 ~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-------~--------~~~~~lg~~~~~~~~~~~A~~~~~~ 226 (324)
.....|..+++ .+++..|..-|++++..-+.. . .++.+++.|+..+++|..|+.++.+
T Consensus 210 ~~ke~Gn~~fK-------~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~k 282 (397)
T KOG0543|consen 210 RKKERGNVLFK-------EGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNK 282 (397)
T ss_pred HHHHhhhHHHh-------hchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHH
Confidence 44455666666 447888888888876543211 1 4688999999999999999999999
Q ss_pred HHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhcc
Q psy8160 227 SVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNN 306 (324)
Q Consensus 227 al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 306 (324)
+|.++|+|..++++.|.++..+|+ ++. |+..|++|++++|+|..++..+..+..
T Consensus 283 vLe~~~~N~KALyRrG~A~l~~~e------------------------~~~--A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 283 VLELDPNNVKALYRRGQALLALGE------------------------YDL--ARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHhcCCCchhHHHHHHHHHHhhcc------------------------HHH--HHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 999999999999999999888888 666 888999999999999988888766544
|
|
| >KOG2047|consensus | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.1e-07 Score=79.50 Aligned_cols=137 Identities=12% Similarity=0.233 Sum_probs=102.8
Q ss_pred chhHHHHHHHHHHHhh-hCCccH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC----HHHHHHhHHHHhhcC
Q psy8160 180 SHRETLAIHCLQKSIE-ADPKSG-----QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN----ADTWCSIGNKDFSNN 249 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~-~~~~~~-----~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~ 249 (324)
.++..+-+..|.+|+. .+|..+ ..|..+|..|...|+.+.|...|++++...=.. ..+|..-|..-....
T Consensus 360 e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~ 439 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHE 439 (835)
T ss_pred cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhh
Confidence 3367777888888864 566543 789999999999999999999999998765322 567888888888888
Q ss_pred CCHHHHHHHH-----------------------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhc
Q psy8160 250 SNREDYHQAL-----------------------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNN 300 (324)
Q Consensus 250 ~~~~~A~~~~-----------------------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 300 (324)
+ ++.|.+.. .+|..++.+.+..|-++. -...|++.+++---.|++--|
T Consensus 440 ~-~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfes--tk~vYdriidLriaTPqii~N 516 (835)
T KOG2047|consen 440 N-FEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFES--TKAVYDRIIDLRIATPQIIIN 516 (835)
T ss_pred h-HHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHH--HHHHHHHHHHHhcCCHHHHHH
Confidence 8 88887766 678888888888888888 888888888888777877666
Q ss_pred hhhhccCChhhHHHHHHHHh
Q psy8160 301 KDFSNNSNREDYHQALNKYR 320 (324)
Q Consensus 301 l~~~~~~~~~~~~~a~~~~~ 320 (324)
.+... .+..-|..+...|.
T Consensus 517 yAmfL-Eeh~yfeesFk~YE 535 (835)
T KOG2047|consen 517 YAMFL-EEHKYFEESFKAYE 535 (835)
T ss_pred HHHHH-HhhHHHHHHHHHHH
Confidence 65432 23455555555554
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.7e-08 Score=87.14 Aligned_cols=120 Identities=21% Similarity=0.272 Sum_probs=105.8
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHH
Q psy8160 125 RFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSL 204 (324)
Q Consensus 125 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 204 (324)
.-.+-.+....++++.|++.+++..+.+ |. +...++.++.. .++..+|+..+.+++...|.+...+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe-----v~~~LA~v~l~-------~~~E~~AI~ll~~aL~~~p~d~~LL 237 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE-----VAVLLARVYLL-------MNEEVEAIRLLNEALKENPQDSELL 237 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc-----HHHHHHHHHHh-------cCcHHHHHHHHHHHHHhCCCCHHHH
Confidence 3344556667789999999999998887 54 55667888765 3367899999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 205 YLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 205 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
...+..+...++++.|+...++++.+.|++...|+.|+.+|...|+ ++.|+..+
T Consensus 238 ~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d-~e~ALlaL 291 (395)
T PF09295_consen 238 NLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGD-FENALLAL 291 (395)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCC-HHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 99999887
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG2047|consensus | Back alignment and domain information |
|---|
Probab=99.01 E-value=8.1e-07 Score=78.77 Aligned_cols=189 Identities=9% Similarity=0.032 Sum_probs=143.2
Q ss_pred HHHHhcccHHHHHHHHHHHHHh-cCCCcc-cHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchh--hHHHHHHH
Q psy8160 92 LMFKVNNEYDSALKHLTLCLID-ASPCTF-TKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK--ADICRQLG 167 (324)
Q Consensus 92 ~~~~~~~~~~~A~~~~~~~l~~-~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~~~~~~l~ 167 (324)
.+-...|+..+-+..|..++.. +|.... ....+|...|.+|...|+.+.|...|++++..+ -..+. +.+|..-|
T Consensus 355 RV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~--y~~v~dLa~vw~~wa 432 (835)
T KOG2047|consen 355 RVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP--YKTVEDLAEVWCAWA 432 (835)
T ss_pred hhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC--ccchHHHHHHHHHHH
Confidence 3444567888889999998776 333332 345789999999999999999999999998765 22221 55666655
Q ss_pred HHHHhhhhhcccchhHHHHHHHHHHHhhhCCc------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q psy8160 168 WMYHCIDTLGEKSHRETLAIHCLQKSIEADPK------------------SGQSLYLLGRCFAAVGKVHDAFLAYRNSVE 229 (324)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 229 (324)
..-.. ..+++.|+.+.++|...-.. +..+|...+..-...|-++.....|.+.++
T Consensus 433 emElr-------h~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriid 505 (835)
T KOG2047|consen 433 EMELR-------HENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIID 505 (835)
T ss_pred HHHHh-------hhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 44443 45899999999999754211 125677778888888999999999999999
Q ss_pred cCCCCHHHHHHhHHHHhhcCCCHHHHHHHH-------------HHHHhh-HHHHHHcC--CCCcchHHHHHHHhhhcCC
Q psy8160 230 KSEGNADTWCSIGNKDFSNNSNREDYHQAL-------------NKYRDL-GDFLVINN--IPTSNNNRQCYNSYSTSIA 292 (324)
Q Consensus 230 ~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-------------~~~~~l-g~~~~~~~--~~~~~~A~~~~~~al~~~p 292 (324)
+.--.|....+.|..+....- +++|-+.| ++|... -..-.+-| ..+. |.+.|++|++.-|
T Consensus 506 LriaTPqii~NyAmfLEeh~y-feesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEr--aRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 506 LRIATPQIIINYAMFLEEHKY-FEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLER--ARDLFEQALDGCP 581 (835)
T ss_pred HhcCCHHHHHHHHHHHHhhHH-HHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHH--HHHHHHHHHhcCC
Confidence 999999999999999999999 99999999 555432 22222333 5777 9999999999888
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.5e-09 Score=77.16 Aligned_cols=107 Identities=12% Similarity=0.057 Sum_probs=96.8
Q ss_pred HHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH----------
Q psy8160 190 LQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL---------- 259 (324)
Q Consensus 190 ~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~---------- 259 (324)
+..+..+.++..+..+..|.-++..|++++|...|+-....+|.+++.|..||.|+..+++ |++|+..|
T Consensus 26 lk~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~-y~~Ai~~Y~~A~~l~~~d 104 (165)
T PRK15331 26 LKDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQ-FQKACDLYAVAFTLLKND 104 (165)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcccCC
Confidence 4455567777788999999999999999999999999999999999999999999999999 99999999
Q ss_pred -HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhc
Q psy8160 260 -NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNN 300 (324)
Q Consensus 260 -~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 300 (324)
...+..|.||...|+... |..+|+.+++ .|.++.++.+
T Consensus 105 p~p~f~agqC~l~l~~~~~--A~~~f~~a~~-~~~~~~l~~~ 143 (165)
T PRK15331 105 YRPVFFTGQCQLLMRKAAK--ARQCFELVNE-RTEDESLRAK 143 (165)
T ss_pred CCccchHHHHHHHhCCHHH--HHHHHHHHHh-CcchHHHHHH
Confidence 677899999999999999 9999999998 6777766554
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=3e-08 Score=76.22 Aligned_cols=183 Identities=13% Similarity=0.078 Sum_probs=108.4
Q ss_pred hhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHH
Q psy8160 86 FTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQ 165 (324)
Q Consensus 86 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 165 (324)
.....|.+|-..|-..-|.-.|.+++...|..+ +++..+|..+...|+++.|.+.|...++++ |.... +..+
T Consensus 67 l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~----~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD--p~y~Y--a~lN 138 (297)
T COG4785 67 LLFERGVLYDSLGLRALARNDFSQALAIRPDMP----EVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNY--AHLN 138 (297)
T ss_pred HHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcH----HHHHHHHHHHHhcccchHHHHHhhhHhccC--CcchH--HHhc
Confidence 334456666666777777777777777766655 667777777777777777777777777777 65533 4455
Q ss_pred HHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHH--HHHHHHHHHHHcCCHHHHHHHH-HHHHccCCCCHHHHH---
Q psy8160 166 LGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQ--SLYLLGRCFAAVGKVHDAFLAY-RNSVEKSEGNADTWC--- 239 (324)
Q Consensus 166 l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~lg~~~~~~~~~~~A~~~~-~~al~~~p~~~~~~~--- 239 (324)
.|..++. -|+++-|.+.+.+--+.+|++|. .|..+- ...-++.+|...+ +++...+.+ -..|.
T Consensus 139 Rgi~~YY-------~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~d~e-~WG~~iV~ 207 (297)
T COG4785 139 RGIALYY-------GGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKSDKE-QWGWNIVE 207 (297)
T ss_pred cceeeee-------cCchHhhHHHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhccHh-hhhHHHHH
Confidence 5544433 33777777777777777777662 232221 1223445554433 334333322 22222
Q ss_pred -HhHHHHhhcCCCHHHHHHHH------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCC
Q psy8160 240 -SIGNKDFSNNSNREDYHQAL------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIA 292 (324)
Q Consensus 240 -~lg~~~~~~~~~~~~A~~~~------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p 292 (324)
.+|.+-.+. .-++++.+ ++++.||..|...|+.++ |...|+-|+..+-
T Consensus 208 ~yLgkiS~e~---l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~--A~~LfKLaiannV 268 (297)
T COG4785 208 FYLGKISEET---LMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDE--ATALFKLAVANNV 268 (297)
T ss_pred HHHhhccHHH---HHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHH--HHHHHHHHHHHhH
Confidence 222221100 00111111 899999999999999999 9999999987543
|
|
| >KOG0543|consensus | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.5e-08 Score=85.12 Aligned_cols=82 Identities=18% Similarity=0.179 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHh
Q psy8160 162 ICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSI 241 (324)
Q Consensus 162 ~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 241 (324)
++.+++.++.. ++++..|+....++|+.+|.|..++|..|.++..+|+++.|+..|+++++++|.|..+...|
T Consensus 259 ~~lNlA~c~lK-------l~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el 331 (397)
T KOG0543|consen 259 CHLNLAACYLK-------LKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAEL 331 (397)
T ss_pred HhhHHHHHHHh-------hhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 44445555544 22555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHhhcCC
Q psy8160 242 GNKDFSNNS 250 (324)
Q Consensus 242 g~~~~~~~~ 250 (324)
..|..+...
T Consensus 332 ~~l~~k~~~ 340 (397)
T KOG0543|consen 332 IKLKQKIRE 340 (397)
T ss_pred HHHHHHHHH
Confidence 555444444
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.9e-08 Score=82.65 Aligned_cols=107 Identities=15% Similarity=0.209 Sum_probs=91.8
Q ss_pred HHHHHHHHHH-HHhhcHHHHHHHHHHHHhcCCCCCchh-hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc
Q psy8160 123 EVRFHIAHLH-EVQRKYKTAKDSYEQLLKEDDLPVHLK-ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS 200 (324)
Q Consensus 123 ~~~~~la~~~-~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 200 (324)
...+..|..+ ...|++++|+..|+..+... |++.. +.+++.+|.+|+. .+++++|+..|+++++..|++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~-------~g~~~~A~~~f~~vv~~yP~s 213 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYN-------KGKKDDAAYYFASVVKNYPKS 213 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHHCCCC
Confidence 5567777665 55699999999999999999 77643 5699999999987 559999999999999888775
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q psy8160 201 ---GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTW 238 (324)
Q Consensus 201 ---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 238 (324)
+++++.+|.++...|++++|...|+++++..|++..+-
T Consensus 214 ~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 214 PKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred cchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 68999999999999999999999999999999887553
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=9.5e-08 Score=73.56 Aligned_cols=189 Identities=14% Similarity=0.172 Sum_probs=136.6
Q ss_pred cchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHH
Q psy8160 49 RANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFH 127 (324)
Q Consensus 49 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 127 (324)
..+..+|..|..|-..|-+.-|.-.|.+++ +.|+-+.+...+|..+...|+|+.|.+.|..++..+|... -++.+
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~----Ya~lN 138 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN----YAHLN 138 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch----HHHhc
Confidence 345689999999999999999999999999 9999999999999999999999999999999999988876 67778
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHH-HhhhCCccHHHHHH
Q psy8160 128 IAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQK-SIEADPKSGQSLYL 206 (324)
Q Consensus 128 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~-al~~~~~~~~~~~~ 206 (324)
.|..+.-.|++.-|.+.+.+-.+.+ |++.. +.-|+|.... .-++.+|..-+.+ +...+ +..-.|+.
T Consensus 139 Rgi~~YY~gR~~LAq~d~~~fYQ~D--~~DPf-----R~LWLYl~E~-----k~dP~~A~tnL~qR~~~~d-~e~WG~~i 205 (297)
T COG4785 139 RGIALYYGGRYKLAQDDLLAFYQDD--PNDPF-----RSLWLYLNEQ-----KLDPKQAKTNLKQRAEKSD-KEQWGWNI 205 (297)
T ss_pred cceeeeecCchHhhHHHHHHHHhcC--CCChH-----HHHHHHHHHh-----hCCHHHHHHHHHHHHHhcc-HhhhhHHH
Confidence 8888888999999999999998888 76632 2335554321 2256677655444 43333 22222322
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCC-------HHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 207 LGRCFAAVGKVHDAFLAYRNSVEKSEGN-------ADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 207 lg~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
.+ +..|+..+ ...++++.....++ .++++.+|..+...|+ .++|...|
T Consensus 206 V~---~yLgkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~-~~~A~~Lf 260 (297)
T COG4785 206 VE---FYLGKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGD-LDEATALF 260 (297)
T ss_pred HH---HHHhhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcccc-HHHHHHHH
Confidence 22 22222211 22333433333333 5788999999999999 99998777
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.3e-08 Score=88.34 Aligned_cols=89 Identities=18% Similarity=0.210 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCH
Q psy8160 138 YKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKV 217 (324)
Q Consensus 138 ~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~ 217 (324)
...+....++++.....|.. +.++..+|..... .+++++|...+++++.++| +..+|..+|.++...|++
T Consensus 400 l~~a~~~~~~a~al~~~~~~--~~~~~ala~~~~~-------~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~ 469 (517)
T PRK10153 400 LAALSTELDNIVALPELNVL--PRIYEILAVQALV-------KGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDN 469 (517)
T ss_pred HHHHHHHHHHhhhcccCcCC--hHHHHHHHHHHHh-------cCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCH
Confidence 44555666666665312444 4477777777654 4599999999999999999 588999999999999999
Q ss_pred HHHHHHHHHHHccCCCCHH
Q psy8160 218 HDAFLAYRNSVEKSEGNAD 236 (324)
Q Consensus 218 ~~A~~~~~~al~~~p~~~~ 236 (324)
++|+..|++|+.++|.++.
T Consensus 470 ~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 470 RLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHHHHhcCCCCch
Confidence 9999999999999999875
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.1e-08 Score=71.66 Aligned_cols=99 Identities=16% Similarity=0.161 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCc---
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPK--- 199 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--- 199 (324)
.++|++|.++...|+.++|+..|++++... .+......++..+|..+.. .|++++|+..+++++...|+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~g-L~~~~~~~a~i~lastlr~-------LG~~deA~~~L~~~~~~~p~~~~ 73 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAG-LSGADRRRALIQLASTLRN-------LGRYDEALALLEEALEEFPDDEL 73 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHHCCCccc
Confidence 356677777777777777777777777653 1222224566677777755 44777777777777776666
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q psy8160 200 SGQSLYLLGRCFAAVGKVHDAFLAYRNSVE 229 (324)
Q Consensus 200 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 229 (324)
+......++.++...|++++|+.++-.++.
T Consensus 74 ~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 74 NAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 556666667777777777777777766654
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.96 E-value=3e-09 Score=68.71 Aligned_cols=65 Identities=17% Similarity=0.275 Sum_probs=59.9
Q ss_pred chhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHH
Q psy8160 180 SHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNK 244 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 244 (324)
.|++++|+..|++++..+|+++.+++.+|.++...|++++|...+++++..+|+++..+..++.+
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 45999999999999999999999999999999999999999999999999999998888777653
|
... |
| >KOG3081|consensus | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.1e-07 Score=71.77 Aligned_cols=152 Identities=15% Similarity=0.156 Sum_probs=121.5
Q ss_pred hhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHH
Q psy8160 85 TFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICR 164 (324)
Q Consensus 85 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 164 (324)
.....-|.++...|++++|++....... .++.-.--.++.+..+.+-|....++..+++ .+. ++.
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~~~~---------lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id--ed~----tLt 173 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHLGEN---------LEAAALNVQILLKMHRFDLAEKELKKMQQID--EDA----TLT 173 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhccch---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--hHH----HHH
Confidence 3444457888888999999997665321 1334444567788889999999999998887 443 777
Q ss_pred HHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHH
Q psy8160 165 QLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNK 244 (324)
Q Consensus 165 ~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 244 (324)
+++..+.....- .+...+|.-+|++.-+..|..+......+.|++.+|+|++|...++.++..++++|++..++-.+
T Consensus 174 QLA~awv~la~g---gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~ 250 (299)
T KOG3081|consen 174 QLAQAWVKLATG---GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVL 250 (299)
T ss_pred HHHHHHHHHhcc---chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 777777553322 34689999999999988888999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCHHHH
Q psy8160 245 DFSNNSNREDY 255 (324)
Q Consensus 245 ~~~~~~~~~~A 255 (324)
-...|. ..++
T Consensus 251 a~~~Gk-d~~~ 260 (299)
T KOG3081|consen 251 ALHLGK-DAEV 260 (299)
T ss_pred HHHhCC-ChHH
Confidence 888888 4443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.2e-08 Score=83.69 Aligned_cols=95 Identities=12% Similarity=0.197 Sum_probs=67.2
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHccCCCC---HHHHHHhHHHHhhcCCCHHHHHHHH--------------HHHH
Q psy8160 202 QSLYLLGRCF-AAVGKVHDAFLAYRNSVEKSEGN---ADTWCSIGNKDFSNNSNREDYHQAL--------------NKYR 263 (324)
Q Consensus 202 ~~~~~lg~~~-~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~~A~~~~--------------~~~~ 263 (324)
..+|..|..+ +..|++++|+..|++.+...|++ +.+++.+|.+|+..|+ +++|+..| ++++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~-~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGK-KDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 4555555554 44566666666666666666665 4566666666666666 66666666 6677
Q ss_pred hhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhh
Q psy8160 264 DLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINN 299 (324)
Q Consensus 264 ~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 299 (324)
.+|.++...|++++ |+..|+++++..|++.....
T Consensus 222 klg~~~~~~g~~~~--A~~~~~~vi~~yP~s~~a~~ 255 (263)
T PRK10803 222 KVGVIMQDKGDTAK--AKAVYQQVIKKYPGTDGAKQ 255 (263)
T ss_pred HHHHHHHHcCCHHH--HHHHHHHHHHHCcCCHHHHH
Confidence 77778877888889 99999999999998876543
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.1e-07 Score=82.01 Aligned_cols=144 Identities=10% Similarity=-0.004 Sum_probs=109.8
Q ss_pred cHHHHHHHHHHHH---HhcCCCcccHHHHHHHHHHHHHHh---------hcHHHHHHHHHHHHhcCCCCCchhhHHHHHH
Q psy8160 99 EYDSALKHLTLCL---IDASPCTFTKLEVRFHIAHLHEVQ---------RKYKTAKDSYEQLLKEDDLPVHLKADICRQL 166 (324)
Q Consensus 99 ~~~~A~~~~~~~l---~~~~~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l 166 (324)
..+.|+..|.+++ ..+|... .++..++.|++.. .+-.+|...-+++++++ |.+ +.++..+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a----~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld--~~D--a~a~~~~ 344 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKT----ECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT--TVD--GKILAIM 344 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccH----HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC--CCC--HHHHHHH
Confidence 3456666666776 4444443 5666666666544 34567888999999999 888 5588999
Q ss_pred HHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHH-hHH-H
Q psy8160 167 GWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCS-IGN-K 244 (324)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-lg~-~ 244 (324)
|.+... .++++.|+..|++++.++|+.+.+|+..|.+....|+.++|+..++++++++|.-..+-.. +-. .
T Consensus 345 g~~~~~-------~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~ 417 (458)
T PRK11906 345 GLITGL-------SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDM 417 (458)
T ss_pred HHHHHh-------hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHH
Confidence 987755 3479999999999999999999999999999999999999999999999999976544322 222 3
Q ss_pred HhhcCCCHHHHHHHH
Q psy8160 245 DFSNNSNREDYHQAL 259 (324)
Q Consensus 245 ~~~~~~~~~~A~~~~ 259 (324)
|... . .++|++.|
T Consensus 418 ~~~~-~-~~~~~~~~ 430 (458)
T PRK11906 418 YVPN-P-LKNNIKLY 430 (458)
T ss_pred HcCC-c-hhhhHHHH
Confidence 4433 3 68888776
|
|
| >KOG1941|consensus | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.2e-07 Score=76.97 Aligned_cols=221 Identities=15% Similarity=0.100 Sum_probs=154.2
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-c-----C-CCCchhhHHHHHHHHhcccHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-I-----D-ASPCTFTKLEGLMFKVNNEYDSA 103 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~-----~-~~~~~~~~~la~~~~~~~~~~~A 103 (324)
++|+....+.|..-.+....-..+-.+..+...+|.|++++..--..+ . | .....++..++.-+....++.++
T Consensus 23 ~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt 102 (518)
T KOG1941|consen 23 EKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKT 102 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 777777777776543322122233345566777888887766544333 1 1 11234556678888888889999
Q ss_pred HHHHHHHHHhcCCCc-ccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCC--chhhHHHHHHHHHHHhhhhhcccc
Q psy8160 104 LKHLTLCLIDASPCT-FTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPV--HLKADICRQLGWMYHCIDTLGEKS 180 (324)
Q Consensus 104 ~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~ 180 (324)
+.+-+..+....... ..-......+|..+..++.++++++.|++++......+ ..+-.++..+|.+|-. .
T Consensus 103 ~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~-------l 175 (518)
T KOG1941|consen 103 ISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQ-------L 175 (518)
T ss_pred HHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHH-------H
Confidence 988887776544433 12235666789999999999999999999986531111 1234588899998866 4
Q ss_pred hhHHHHHHHHHHHhhhCCcc----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccC------CCCHHHHHHhHHH
Q psy8160 181 HRETLAIHCLQKSIEADPKS----------GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKS------EGNADTWCSIGNK 244 (324)
Q Consensus 181 ~~~~~A~~~~~~al~~~~~~----------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~lg~~ 244 (324)
.++++|+.+..++.++.... ..+++.++..+...|..-+|.++++++.++. +..+.....+|++
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 48999999999998764321 2567888999999999999999999987753 3335566788999
Q ss_pred HhhcCCCHHHHHHHH
Q psy8160 245 DFSNNSNREDYHQAL 259 (324)
Q Consensus 245 ~~~~~~~~~~A~~~~ 259 (324)
|...|+ .+.|..-|
T Consensus 256 yR~~gd-~e~af~rY 269 (518)
T KOG1941|consen 256 YRSRGD-LERAFRRY 269 (518)
T ss_pred HHhccc-HhHHHHHH
Confidence 999999 88887777
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1e-08 Score=88.04 Aligned_cols=64 Identities=19% Similarity=0.272 Sum_probs=56.9
Q ss_pred hhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHH---HHHhHHHHhhcCCCHHHHHHHH
Q psy8160 195 EADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADT---WCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 195 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
..+|+++.+|+++|.+++..|++++|+..|+++++++|+++++ |+++|.+|..+|+ +++|+.++
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr-~dEAla~L 135 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREE-GKKAADCL 135 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence 3678999999999999999999999999999999999999865 8999999888888 66666655
|
|
| >KOG4234|consensus | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.3e-08 Score=75.06 Aligned_cols=118 Identities=13% Similarity=0.041 Sum_probs=93.9
Q ss_pred chhHHHHHHHHHHHhhhCCccH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHH
Q psy8160 180 SHRETLAIHCLQKSIEADPKSG-----QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNRED 254 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~~~-----~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~ 254 (324)
.|+|++|...|..|+...|..+ -.|.+.|.+.+.++.++.|+..+.++++++|.+..+....+.+|.+...
T Consensus 108 ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek---- 183 (271)
T KOG4234|consen 108 NGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK---- 183 (271)
T ss_pred cccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh----
Confidence 5699999999999999998765 4567889999999999999999999999999987777777766666655
Q ss_pred HHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhcc--CCh--hhHHHHHHHHhhcC
Q psy8160 255 YHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNN--SNR--EDYHQALNKYRDLG 323 (324)
Q Consensus 255 A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~--~~~--~~~~~a~~~~~~~~ 323 (324)
+++ |+..|.+.++.+|+...++....-+.- ..| .--.+++.+++++|
T Consensus 184 --------------------~ee--aleDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKee~m~kLKdlG 234 (271)
T KOG4234|consen 184 --------------------YEE--ALEDYKKILESDPSRREAREAIARLPPKINERNEKMKEEMMEKLKDLG 234 (271)
T ss_pred --------------------HHH--HHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 777 999999999999998877665543321 122 23457888999887
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.8e-08 Score=69.44 Aligned_cols=91 Identities=16% Similarity=0.212 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC---C
Q psy8160 161 DICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS---GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEG---N 234 (324)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~ 234 (324)
.+++.+++++.. .|+.++|+.+|++++...... ..+++.+|.++...|++++|+..+++++...|+ +
T Consensus 2 ~~~~~~A~a~d~-------~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~ 74 (120)
T PF12688_consen 2 RALYELAWAHDS-------LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELN 74 (120)
T ss_pred chHHHHHHHHHh-------cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcccc
Confidence 378899999955 559999999999999875444 478999999999999999999999999999898 7
Q ss_pred HHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 235 ADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 235 ~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
..+...++.++...|+ +++|+..+
T Consensus 75 ~~l~~f~Al~L~~~gr-~~eAl~~~ 98 (120)
T PF12688_consen 75 AALRVFLALALYNLGR-PKEALEWL 98 (120)
T ss_pred HHHHHHHHHHHHHCCC-HHHHHHHH
Confidence 8888889999999999 99998876
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=3e-06 Score=68.36 Aligned_cols=109 Identities=15% Similarity=0.168 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHhhhCC---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC-CHHHHHHhHHHHhhcCCCHHHHHH
Q psy8160 182 RETLAIHCLQKSIEADP---KSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEG-NADTWCSIGNKDFSNNSNREDYHQ 257 (324)
Q Consensus 182 ~~~~A~~~~~~al~~~~---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~A~~ 257 (324)
+++.|+..+.+++...| .....+...+..+...++++.|+..+.+++...+. ....+..++.++...+. +..|+.
T Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~ 223 (291)
T COG0457 145 DYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK-YEEALE 223 (291)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc-HHHHHH
Confidence 44445555555444333 22333333444444444555555555555555444 34444455555555444 444444
Q ss_pred HH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCC
Q psy8160 258 AL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIAS 293 (324)
Q Consensus 258 ~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~ 293 (324)
.+ ..+..++..+...+.... +...+.+++...|.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 268 (291)
T COG0457 224 YYEKALELDPDNAEALYNLALLLLELGRYEE--ALEALEKALELDPD 268 (291)
T ss_pred HHHHHHhhCcccHHHHhhHHHHHHHcCCHHH--HHHHHHHHHHhCcc
Confidence 44 234444444444445666 77777777777775
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.6e-06 Score=66.76 Aligned_cols=214 Identities=21% Similarity=0.241 Sum_probs=170.0
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh---cCCCCchhhHHHHHHHHhcccHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL---IDASPCTFTKLEGLMFKVNNEYDSALKHL 107 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al---~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 107 (324)
..+...+...+...+.. .........+..+...+++..+...+...+ ..+.........+..+...+++..+++.+
T Consensus 40 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
T COG0457 40 AEALELLEEALELLPNS-DLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELL 118 (291)
T ss_pred HHHHHHHHHHHhcCccc-cchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 66777777777777542 123467888899999999999999999888 36777777788899999999999999999
Q ss_pred HHHHHhcCCCcccHHHHHHHHHH-HHHHhhcHHHHHHHHHHHHhcCCCCC-chhhHHHHHHHHHHHhhhhhcccchhHHH
Q psy8160 108 TLCLIDASPCTFTKLEVRFHIAH-LHEVQRKYKTAKDSYEQLLKEDDLPV-HLKADICRQLGWMYHCIDTLGEKSHRETL 185 (324)
Q Consensus 108 ~~~l~~~~~~~~~~~~~~~~la~-~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 185 (324)
..++...+... ......+. ++...|+++.|...|.+++... |. ..........+..+.. .++++.
T Consensus 119 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-------~~~~~~ 185 (291)
T COG0457 119 EKALALDPDPD----LAEALLALGALYELGDYEEALELYEKALELD--PELNELAEALLALGALLEA-------LGRYEE 185 (291)
T ss_pred HHHHcCCCCcc----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCccchHHHHHHhhhHHHH-------hcCHHH
Confidence 99987665553 33444444 8899999999999999997755 42 1223344444444322 348999
Q ss_pred HHHHHHHHhhhCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 186 AIHCLQKSIEADPK-SGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 186 A~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
|+..+.+++...+. ....+..++.++...++++.|+..+..++...|.....+..++..+...+. ++.+...+
T Consensus 186 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 259 (291)
T COG0457 186 ALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGR-YEEALEAL 259 (291)
T ss_pred HHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCC-HHHHHHHH
Confidence 99999999999998 689999999999999999999999999999999988888888888887787 88888776
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.5e-07 Score=81.38 Aligned_cols=120 Identities=20% Similarity=0.295 Sum_probs=105.2
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHH
Q psy8160 90 EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWM 169 (324)
Q Consensus 90 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~ 169 (324)
+-.++...++++.|+..+++.....| ++...++.++...++..+|+..+.+++... |.+ +..+...+..
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~p-------ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~--p~d--~~LL~~Qa~f 243 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDP-------EVAVLLARVYLLMNEEVEAIRLLNEALKEN--PQD--SELLNLQAEF 243 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCC-------cHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCC--HHHHHHHHHH
Confidence 56677778999999999999887764 356678999999999999999999999888 877 5588888888
Q ss_pred HHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy8160 170 YHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNS 227 (324)
Q Consensus 170 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 227 (324)
+.. .++++.|+...+++++..|.+...|+.|+.+|...|+++.|+..++.+
T Consensus 244 Ll~-------k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 244 LLS-------KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHh-------cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 866 558999999999999999999999999999999999999999888754
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.9e-06 Score=68.74 Aligned_cols=163 Identities=12% Similarity=0.155 Sum_probs=112.4
Q ss_pred HHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchh-hHHHHHHHHH
Q psy8160 91 GLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK-ADICRQLGWM 169 (324)
Q Consensus 91 a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~l~~~ 169 (324)
|......|++++|.+.|+.+....|.++.. ..+...++..+...++++.|+...++-+... |.+.. ..+++..|.+
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~-~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly--P~~~n~dY~~YlkgLs 117 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYS-EQAQLDLAYAYYKNGEYDLALAYIDRFIRLY--PTHPNADYAYYLKGLS 117 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHHhcccHHHHHHHHHHHHHhC--CCCCChhHHHHHHHHH
Confidence 334444455555555555555555555544 4678888999999999999999999999998 66654 5577777777
Q ss_pred HHhhhh-hcccchhHHHHHHHHHHHhhhCCccHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q psy8160 170 YHCIDT-LGEKSHRETLAIHCLQKSIEADPKSGQ-----------------SLYLLGRCFAAVGKVHDAFLAYRNSVEKS 231 (324)
Q Consensus 170 ~~~~~~-~~~~~~~~~~A~~~~~~al~~~~~~~~-----------------~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 231 (324)
++..-. ......-..+|+..++..+...|++.- -=..+|..|.+.|.+..|+.-++.+++.-
T Consensus 118 ~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y 197 (254)
T COG4105 118 YFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENY 197 (254)
T ss_pred HhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcc
Confidence 643211 111133566889999999999998861 11356888999999999999999999887
Q ss_pred CCC---HHHHHHhHHHHhhcCCCHHHHHH
Q psy8160 232 EGN---ADTWCSIGNKDFSNNSNREDYHQ 257 (324)
Q Consensus 232 p~~---~~~~~~lg~~~~~~~~~~~~A~~ 257 (324)
|+. .+++..+..+|..+|- .++|.+
T Consensus 198 ~~t~~~~eaL~~l~eaY~~lgl-~~~a~~ 225 (254)
T COG4105 198 PDTSAVREALARLEEAYYALGL-TDEAKK 225 (254)
T ss_pred ccccchHHHHHHHHHHHHHhCC-hHHHHH
Confidence 665 3455666666666666 555533
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.7e-08 Score=65.18 Aligned_cols=63 Identities=19% Similarity=0.330 Sum_probs=58.6
Q ss_pred chhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhH
Q psy8160 180 SHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 242 (324)
.+++++|+.++++++..+|.++..|..+|.++...|++.+|+..++++++.+|+++.+....+
T Consensus 8 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 8 QEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred CCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 459999999999999999999999999999999999999999999999999999988765554
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.3e-06 Score=68.25 Aligned_cols=161 Identities=13% Similarity=0.153 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchh-hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc
Q psy8160 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK-ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS 200 (324)
Q Consensus 122 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 200 (324)
+..++.-|....+.|++++|++.|+.+.... |.... ..+...++..++. .+++++|+...++-+.+.|.+
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~--p~s~~~~qa~l~l~yA~Yk-------~~~y~~A~~~~drFi~lyP~~ 104 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRH--PFSPYSEQAQLDLAYAYYK-------NGEYDLALAYIDRFIRLYPTH 104 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCcccHHHHHHHHHHHHh-------cccHHHHHHHHHHHHHhCCCC
Confidence 4678888999999999999999999999887 65433 5688888888877 559999999999999999988
Q ss_pred H---HHHHHHHHHHHHc--------CCHHHHHHHHHHHHccCCCCH---HH--------------HHHhHHHHhhcCCCH
Q psy8160 201 G---QSLYLLGRCFAAV--------GKVHDAFLAYRNSVEKSEGNA---DT--------------WCSIGNKDFSNNSNR 252 (324)
Q Consensus 201 ~---~~~~~lg~~~~~~--------~~~~~A~~~~~~al~~~p~~~---~~--------------~~~lg~~~~~~~~~~ 252 (324)
+ -+++..|.+++.. .-...|+..|+..+...|++. ++ =..+|..|.+.|. |
T Consensus 105 ~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~-~ 183 (254)
T COG4105 105 PNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGA-Y 183 (254)
T ss_pred CChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-h
Confidence 7 4678888887754 224568999999999999872 21 2356788888888 8
Q ss_pred HHHHHHH--------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhc-CCChh
Q psy8160 253 EDYHQAL--------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTS-IASCK 295 (324)
Q Consensus 253 ~~A~~~~--------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~-~p~~~ 295 (324)
..|+..+ +++..+..+|.+.|-.++ |-+.=. .+.. .|+++
T Consensus 184 ~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~--a~~~~~-vl~~N~p~s~ 238 (254)
T COG4105 184 VAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDE--AKKTAK-VLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHH--HHHHHH-HHHhcCCCCc
Confidence 8887766 778888888888887777 665544 4444 45554
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.7e-08 Score=74.55 Aligned_cols=108 Identities=9% Similarity=0.073 Sum_probs=80.9
Q ss_pred hHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCC
Q psy8160 182 RETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGK----------VHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSN 251 (324)
Q Consensus 182 ~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 251 (324)
-++.|.+.++.....+|.+++.+++.|.++..+.+ +++|+.-|++|+.++|+..++++++|.+|...+.
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~- 84 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF- 84 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh-
Confidence 57889999999999999999999999988877633 4668888999999999999999999999987664
Q ss_pred HHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhh
Q psy8160 252 REDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFS 304 (324)
Q Consensus 252 ~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 304 (324)
...- .-.....+++ |.++|++|...+|+|...+..|...
T Consensus 85 l~~d------------~~~A~~~F~k--A~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 85 LTPD------------TAEAEEYFEK--ATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp H---------------HHHHHHHHHH--HHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred hcCC------------hHHHHHHHHH--HHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 2211 1111223678 9999999999999999888887754
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG4234|consensus | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.3e-07 Score=69.70 Aligned_cols=119 Identities=15% Similarity=0.139 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCch---hhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCc
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHL---KADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPK 199 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 199 (324)
+.+-.-|.-++..|+|++|...|..++... |... +...+.+.|-+... ++.++.|+..+.++++++|.
T Consensus 96 d~lK~EGN~~F~ngdyeeA~skY~~Ale~c--p~~~~e~rsIly~Nraaa~iK-------l~k~e~aI~dcsKaiel~pt 166 (271)
T KOG4234|consen 96 DSLKKEGNELFKNGDYEEANSKYQEALESC--PSTSTEERSILYSNRAAALIK-------LRKWESAIEDCSKAIELNPT 166 (271)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHhC--ccccHHHHHHHHhhhHHHHHH-------hhhHHHHHHHHHhhHhcCch
Confidence 344455888899999999999999999987 5432 24566666766655 55899999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCC
Q psy8160 200 SGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNS 250 (324)
Q Consensus 200 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 250 (324)
+..++...+.+|..+.++++|+.-|.+.++.+|....+...+..+--....
T Consensus 167 y~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~e 217 (271)
T KOG4234|consen 167 YEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINE 217 (271)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHH
Confidence 999999999999999999999999999999999988777666665444444
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.9e-07 Score=74.00 Aligned_cols=107 Identities=16% Similarity=0.200 Sum_probs=96.0
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchh-hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc---
Q psy8160 125 RFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK-ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS--- 200 (324)
Q Consensus 125 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--- 200 (324)
.|+.|.-+...|+|..|...|..-++.. |++.. +.+++.||.+++. .|+++.|...|..+.+..|++
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~-------qg~y~~Aa~~f~~~~k~~P~s~KA 214 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYA-------QGDYEDAAYIFARVVKDYPKSPKA 214 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHh-------cccchHHHHHHHHHHHhCCCCCCC
Confidence 7888999999999999999999999998 77655 7899999999988 569999999999999988766
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHH
Q psy8160 201 GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCS 240 (324)
Q Consensus 201 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 240 (324)
|++++.||.+...+|+.++|...|+++++..|+.+.+-..
T Consensus 215 pdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 215 PDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 4889999999999999999999999999999998766443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.71 E-value=7e-07 Score=65.00 Aligned_cols=106 Identities=16% Similarity=0.184 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchh-hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK-ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG 201 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 201 (324)
..++.-|......|+|++|++.|+.+.... |.... ..+...++.+|+. .+++++|+..+++-++++|.++
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry--P~g~ya~qAqL~l~yayy~-------~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRY--PFGEYAEQAQLDLAYAYYK-------QGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCCcccHHHHHHHHHHHHH-------ccCHHHHHHHHHHHHHhCCCCC
Confidence 345555555555566666666665555554 32211 3455555555554 3355566666666665555554
Q ss_pred ---HHHHHHHHHHHHcCC---------------HHHHHHHHHHHHccCCCCHHH
Q psy8160 202 ---QSLYLLGRCFAAVGK---------------VHDAFLAYRNSVEKSEGNADT 237 (324)
Q Consensus 202 ---~~~~~lg~~~~~~~~---------------~~~A~~~~~~al~~~p~~~~~ 237 (324)
-+++..|.+++.+.. ..+|...|++.+...|++.-+
T Consensus 82 ~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 82 NVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred CccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 345555555555544 668999999999999887543
|
|
| >KOG4648|consensus | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.9e-08 Score=81.47 Aligned_cols=98 Identities=11% Similarity=0.138 Sum_probs=73.1
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Q psy8160 55 LRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHE 133 (324)
Q Consensus 55 ~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~ 133 (324)
-..|.-|+.+|.|++|+.||.+++ .+|.+...+...|..|.....|..|+..++.++..+.... .++...|....
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~----KAYSRR~~AR~ 176 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYV----KAYSRRMQARE 176 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHH----HHHHHHHHHHH
Confidence 345777888888888888888888 8888877777788888888888888887777775543322 45666777777
Q ss_pred HhhcHHHHHHHHHHHHhcCCCCCch
Q psy8160 134 VQRKYKTAKDSYEQLLKEDDLPVHL 158 (324)
Q Consensus 134 ~~~~~~~A~~~~~~al~~~~~~~~~ 158 (324)
.+|..++|.+.++.++.+. |+..
T Consensus 177 ~Lg~~~EAKkD~E~vL~LE--P~~~ 199 (536)
T KOG4648|consen 177 SLGNNMEAKKDCETVLALE--PKNI 199 (536)
T ss_pred HHhhHHHHHHhHHHHHhhC--cccH
Confidence 7788888888888888877 6653
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.9e-07 Score=68.44 Aligned_cols=104 Identities=16% Similarity=0.243 Sum_probs=78.7
Q ss_pred cHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhc---ccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHH
Q psy8160 137 KYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLG---EKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAA 213 (324)
Q Consensus 137 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 213 (324)
-|+.|.+.++.....+ |.+ ++.+++=|.++....... +...-+++|+.-|++++.++|+..++++.+|.++..
T Consensus 6 ~FE~ark~aea~y~~n--P~D--adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKN--PLD--ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHHHHH---TT---HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC--cHh--HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 3678888999989999 887 557777777775543332 234578999999999999999999999999999987
Q ss_pred cCC-----------HHHHHHHHHHHHccCCCCHHHHHHhHHH
Q psy8160 214 VGK-----------VHDAFLAYRNSVEKSEGNADTWCSIGNK 244 (324)
Q Consensus 214 ~~~-----------~~~A~~~~~~al~~~p~~~~~~~~lg~~ 244 (324)
.+. |++|..+|++|+..+|++...+..|..+
T Consensus 82 ~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 82 LAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 743 7789999999999999998877776554
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.1e-07 Score=61.76 Aligned_cols=73 Identities=14% Similarity=0.069 Sum_probs=49.9
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIA 129 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la 129 (324)
...++..+|.+|..+|+|++|+++|++++ .. ....++.....+.++.++|
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al--------------------------~~----~~~~~~~~~~~a~~~~~lg 53 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKAL--------------------------DI----EEQLGDDHPDTANTLNNLG 53 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH--------------------------HH----HHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------------------------HH----HHHHCCCCHHHHHHHHHHH
Confidence 34567788888888888888888887655 11 1111222222356788899
Q ss_pred HHHHHhhcHHHHHHHHHHHHhcC
Q psy8160 130 HLHEVQRKYKTAKDSYEQLLKED 152 (324)
Q Consensus 130 ~~~~~~~~~~~A~~~~~~al~~~ 152 (324)
.++...|++++|++++++++++.
T Consensus 54 ~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 54 ECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhh
Confidence 99999999999999999988753
|
... |
| >KOG1070|consensus | Back alignment and domain information |
|---|
Probab=98.63 E-value=9.1e-06 Score=78.11 Aligned_cols=209 Identities=11% Similarity=0.073 Sum_probs=167.7
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh--cCCCCch----hhHHHHHHHHhcccHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL--IDASPCT----FTKLEGLMFKVNNEYDSAL 104 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al--~~~~~~~----~~~~la~~~~~~~~~~~A~ 104 (324)
.+..+-|++.+..+|+. +-.|.+.-..+...++.++|.+.+++|+ +++.-.. .|..+-++...-|.-+.-.
T Consensus 1441 pesaeDferlvrssPNS---Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~ 1517 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNS---SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLK 1517 (1710)
T ss_pred CcCHHHHHHHHhcCCCc---chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHH
Confidence 44667888889889873 4467777777888999999999999999 7655433 2333344444557778888
Q ss_pred HHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHH
Q psy8160 105 KHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRET 184 (324)
Q Consensus 105 ~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 184 (324)
+.|+++.+-..+- .++..|..+|.....+++|.++++..++..+ .. ..+|...+...+. ..+-+
T Consensus 1518 kVFeRAcqycd~~-----~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~--~~vW~~y~~fLl~-------~ne~~ 1581 (1710)
T KOG1070|consen 1518 KVFERACQYCDAY-----TVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QT--RKVWIMYADFLLR-------QNEAE 1581 (1710)
T ss_pred HHHHHHHHhcchH-----HHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--ch--hhHHHHHHHHHhc-------ccHHH
Confidence 8899888765443 5788899999999999999999999998884 33 3489998888876 33667
Q ss_pred HHHHHHHHHhhhCCc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 185 LAIHCLQKSIEADPK--SGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 185 ~A~~~~~~al~~~~~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
.|...+.+|+..-|. +.+..-.-+.+-+..|+.+.+...|+-.+...|.-.+.|..+.+.-.+.|. .+.+...|
T Consensus 1582 aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~-~~~vR~lf 1657 (1710)
T KOG1070|consen 1582 AARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGD-IKYVRDLF 1657 (1710)
T ss_pred HHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCC-HHHHHHHH
Confidence 888999999998888 557777888999999999999999999999999999999999999889898 88888888
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.62 E-value=4e-07 Score=73.19 Aligned_cols=94 Identities=13% Similarity=0.100 Sum_probs=84.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHhHHHHhhcCCCHHHHHHHH--------------HHHHhhH
Q psy8160 204 LYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN---ADTWCSIGNKDFSNNSNREDYHQAL--------------NKYRDLG 266 (324)
Q Consensus 204 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~~A~~~~--------------~~~~~lg 266 (324)
.|+.|.-++..|+|.+|...|..-++..|++ +++++.||.+++.+|+ +++|...| ++++.||
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~-y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGD-YEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhccc-chHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 7888999999999999999999999988876 7889999999999999 99998888 8999999
Q ss_pred HHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhc
Q psy8160 267 DFLVINNIPTSNNNRQCYNSYSTSIASCKHINNN 300 (324)
Q Consensus 267 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 300 (324)
.+....|+.++ |...|+++++..|+.+.+...
T Consensus 223 ~~~~~l~~~d~--A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 223 VSLGRLGNTDE--ACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHHhcCHHH--HHHHHHHHHHHCCCCHHHHHH
Confidence 99999999999 999999999999998766543
|
|
| >KOG1070|consensus | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.2e-05 Score=73.74 Aligned_cols=207 Identities=9% Similarity=0.009 Sum_probs=127.5
Q ss_pred HHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCC-cccHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q psy8160 70 ALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPC-TFTKLEVRFHIAHLHEVQRKYKTAKDSYEQ 147 (324)
Q Consensus 70 A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 147 (324)
..+.|.+.+ .+|+....|...-......++.+.|.+..+++|...... ...+..+|..+-.+-..-|.-+.-.+.|++
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 344555555 677776666665555566677777777777776553222 222333444443333333544555566666
Q ss_pred HHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy8160 148 LLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNS 227 (324)
Q Consensus 148 al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 227 (324)
|.+.. . . ..++..|..+|.. .+.+++|.++++..++...+....|..+|..++.+.+-+.|...+.+|
T Consensus 1523 Acqyc--d-~--~~V~~~L~~iy~k-------~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rA 1590 (1710)
T KOG1070|consen 1523 ACQYC--D-A--YTVHLKLLGIYEK-------SEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRA 1590 (1710)
T ss_pred HHHhc--c-h--HHHHHHHHHHHHH-------hhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 66554 1 1 2266666666644 236677777777777766666677777777777777777777777777
Q ss_pred HccCCC--CHHHHHHhHHHHhhcCCCHHHHHHHH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcC
Q psy8160 228 VEKSEG--NADTWCSIGNKDFSNNSNREDYHQAL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSI 291 (324)
Q Consensus 228 l~~~p~--~~~~~~~lg~~~~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~ 291 (324)
+..-|. +.+.....+.+-++.|+ .+.+...| +.|.-+...-.+.+..+. ....|++++.+.
T Consensus 1591 L~~lPk~eHv~~IskfAqLEFk~GD-aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~--vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1591 LKSLPKQEHVEFISKFAQLEFKYGD-AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKY--VRDLFERVIELK 1664 (1710)
T ss_pred HhhcchhhhHHHHHHHHHHHhhcCC-chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHH--HHHHHHHHHhcC
Confidence 777776 56666667777777777 77666666 566666665556666666 777777776553
|
|
| >KOG4555|consensus | Back alignment and domain information |
|---|
Probab=98.61 E-value=8.7e-07 Score=62.62 Aligned_cols=99 Identities=14% Similarity=0.108 Sum_probs=90.9
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Q psy8160 54 HLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLH 132 (324)
Q Consensus 54 ~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~ 132 (324)
+-.-|......|+.+.|++.|.+++ .-|.+..++...+..+..+|+.++|+..+++++....+...+.-.++.+.|.+|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 3445778888999999999999999 999999999999999999999999999999999987777767778999999999
Q ss_pred HHhhcHHHHHHHHHHHHhcC
Q psy8160 133 EVQRKYKTAKDSYEQLLKED 152 (324)
Q Consensus 133 ~~~~~~~~A~~~~~~al~~~ 152 (324)
...|+.+.|...|+.+-.+.
T Consensus 126 Rl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHhCchHHHHHhHHHHHHhC
Confidence 99999999999999998876
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.1e-07 Score=55.19 Aligned_cols=44 Identities=14% Similarity=0.335 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHH
Q psy8160 201 GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNK 244 (324)
Q Consensus 201 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 244 (324)
|.+|+.+|..|...|++++|+..|+++++.+|+++++|..+|.+
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 46789999999999999999999999999999999999999863
|
|
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=98.58 E-value=8.9e-06 Score=74.36 Aligned_cols=25 Identities=12% Similarity=-0.055 Sum_probs=20.9
Q ss_pred CHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 234 NADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 234 ~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
+|......++.+....+ |++|+..+
T Consensus 1079 Dp~ll~RcadFF~~~~q-yekAV~lL 1103 (1416)
T KOG3617|consen 1079 DPKLLRRCADFFENNQQ-YEKAVNLL 1103 (1416)
T ss_pred CHHHHHHHHHHHHhHHH-HHHHHHHH
Confidence 57777888888888888 99998877
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.5e-07 Score=59.29 Aligned_cols=60 Identities=18% Similarity=0.201 Sum_probs=39.8
Q ss_pred HHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCC
Q psy8160 58 GLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPC 117 (324)
Q Consensus 58 g~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~ 117 (324)
..+|...++|++|++++++++ .+|.+...+...|.++...|++.+|++.+++++...|..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 345666677777777777777 667666666666666666666666666666666665544
|
|
| >KOG1586|consensus | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.3e-05 Score=62.64 Aligned_cols=155 Identities=13% Similarity=0.055 Sum_probs=100.8
Q ss_pred hccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHh--cCCCcccHHHHHHHHHHHHHHhhcHHHH
Q psy8160 64 NNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLID--ASPCTFTKLEVRFHIAHLHEVQRKYKTA 141 (324)
Q Consensus 64 ~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A 141 (324)
.+.+++|.++|.++ |+.|....++..|=..|.++-+. ...+....+..+...+.||... ++.+|
T Consensus 27 ~~k~eeAadl~~~A-------------an~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~-~~~eA 92 (288)
T KOG1586|consen 27 SNKYEEAAELYERA-------------ANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV-DPEEA 92 (288)
T ss_pred CcchHHHHHHHHHH-------------HHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-ChHHH
Confidence 34666777766654 45666666666666666665322 2222223345566667777655 89999
Q ss_pred HHHHHHHHhcCCCCCchh--hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc------HHHHHHHHHHHHH
Q psy8160 142 KDSYEQLLKEDDLPVHLK--ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS------GQSLYLLGRCFAA 213 (324)
Q Consensus 142 ~~~~~~al~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~lg~~~~~ 213 (324)
+.++++++++.-...... +.-+..+|.+|-.. ..++++|+.+|+++-+-.... ...+...+..-..
T Consensus 93 v~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsd------l~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~ 166 (288)
T KOG1586|consen 93 VNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESD------LQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQ 166 (288)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhh------HHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHH
Confidence 999999998861111111 33455667777431 348999999999997644322 2556677777888
Q ss_pred cCCHHHHHHHHHHHHccCCCCHHHH
Q psy8160 214 VGKVHDAFLAYRNSVEKSEGNADTW 238 (324)
Q Consensus 214 ~~~~~~A~~~~~~al~~~p~~~~~~ 238 (324)
.++|.+|+..|+++....-+++-.-
T Consensus 167 leqY~~Ai~iyeqva~~s~~n~LLK 191 (288)
T KOG1586|consen 167 LEQYSKAIDIYEQVARSSLDNNLLK 191 (288)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHH
Confidence 8999999999999988776665443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.5e-06 Score=60.82 Aligned_cols=117 Identities=15% Similarity=0.152 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Q psy8160 51 NEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAH 130 (324)
Q Consensus 51 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~ 130 (324)
+..++.-|.-.+..|+|++|++.|+. +....|..... ..+...++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~---------------------------------L~~ryP~g~ya-~qAqL~l~y 55 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEA---------------------------------LDTRYPFGEYA-EQAQLDLAY 55 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHH---------------------------------HHhcCCCCccc-HHHHHHHHH
Confidence 34566666666666666666666664 33333433332 256777788
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCCCCchh-hHHHHHHHHHHHhhhh--------hcccchhHHHHHHHHHHHhhhCCccH
Q psy8160 131 LHEVQRKYKTAKDSYEQLLKEDDLPVHLK-ADICRQLGWMYHCIDT--------LGEKSHRETLAIHCLQKSIEADPKSG 201 (324)
Q Consensus 131 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~l~~~~~~~~~--------~~~~~~~~~~A~~~~~~al~~~~~~~ 201 (324)
+|+..+++++|+..+++.++++ |.+.. ..+++..|.+++.... .....+...+|...|++.++..|++.
T Consensus 56 ayy~~~~y~~A~a~~~rFirLh--P~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 56 AYYKQGDYEEAIAAYDRFIRLH--PTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHccCHHHHHHHHHHHHHhC--CCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 8888888888888888888887 66654 4577777777765321 11123357789999999999999886
Q ss_pred HH
Q psy8160 202 QS 203 (324)
Q Consensus 202 ~~ 203 (324)
.+
T Consensus 134 ya 135 (142)
T PF13512_consen 134 YA 135 (142)
T ss_pred hH
Confidence 43
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.4e-07 Score=58.41 Aligned_cols=66 Identities=21% Similarity=0.239 Sum_probs=47.9
Q ss_pred HHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHH
Q psy8160 133 EVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGR 209 (324)
Q Consensus 133 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~ 209 (324)
...|++++|+..|++++..+ |++ ..++..++.++.. .|++++|...+++++..+|+++..+..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~--p~~--~~~~~~la~~~~~-------~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN--PDN--PEARLLLAQCYLK-------QGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT--TTS--HHHHHHHHHHHHH-------TT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC--CCC--HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 45677888888888888777 776 4477777777766 447888888888888888877777666654
|
... |
| >KOG4648|consensus | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.5e-07 Score=74.14 Aligned_cols=105 Identities=14% Similarity=0.012 Sum_probs=85.1
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHH
Q psy8160 126 FHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLY 205 (324)
Q Consensus 126 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 205 (324)
-..|.-|+.+|.|++|++||.+++..+ |.+ +..+.+.+..|+. ...+..|...+..++.++.....+|.
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~--P~N--pV~~~NRA~AYlk-------~K~FA~AE~DC~~AiaLd~~Y~KAYS 169 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVY--PHN--PVYHINRALAYLK-------QKSFAQAEEDCEAAIALDKLYVKAYS 169 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccC--CCC--ccchhhHHHHHHH-------HHHHHHHHHhHHHHHHhhHHHHHHHH
Confidence 345788888899999999999988888 755 4477777778876 44788888888999888888888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHh
Q psy8160 206 LLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSI 241 (324)
Q Consensus 206 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 241 (324)
..|..-..+|+..+|.+.++.++.+.|++.+....+
T Consensus 170 RR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~ 205 (536)
T KOG4648|consen 170 RRMQARESLGNNMEAKKDCETVLALEPKNIELKKSL 205 (536)
T ss_pred HHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHH
Confidence 888888889999999999999999988876654443
|
|
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=98.55 E-value=2e-05 Score=72.15 Aligned_cols=200 Identities=12% Similarity=0.080 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHhccHHHHHHHH------------HHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcc
Q psy8160 52 EVHLRLGLMFKVNNEYDSALKHL------------TLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTF 119 (324)
Q Consensus 52 ~~~~~lg~~~~~~~~~~~A~~~~------------~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~ 119 (324)
.+|-+++.++.+.++.+-|.-++ +++..+|....+. .|.+-...|-.++|+..|.+.-+
T Consensus 758 ~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eak--vAvLAieLgMlEeA~~lYr~ckR------- 828 (1416)
T KOG3617|consen 758 SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAK--VAVLAIELGMLEEALILYRQCKR------- 828 (1416)
T ss_pred HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhH--HHHHHHHHhhHHHHHHHHHHHHH-------
Confidence 47888888888887777665543 3444344433332 34555566777777777776532
Q ss_pred cHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHH------
Q psy8160 120 TKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKS------ 193 (324)
Q Consensus 120 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a------ 193 (324)
+-.+-.+|...|.+.+|.+.-+.--.+. + ..++++.+.-... .++.+.|+++|+++
T Consensus 829 -----~DLlNKlyQs~g~w~eA~eiAE~~DRiH-----L-r~Tyy~yA~~Lea-------r~Di~~AleyyEK~~~hafe 890 (1416)
T KOG3617|consen 829 -----YDLLNKLYQSQGMWSEAFEIAETKDRIH-----L-RNTYYNYAKYLEA-------RRDIEAALEYYEKAGVHAFE 890 (1416)
T ss_pred -----HHHHHHHHHhcccHHHHHHHHhhcccee-----h-hhhHHHHHHHHHh-------hccHHHHHHHHHhcCChHHH
Confidence 2334556667777776665543211111 1 1244444443322 23566666666664
Q ss_pred ----hhhCC----------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 194 ----IEADP----------KSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 194 ----l~~~~----------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
+..+| .++..|...|......|+.+.|+.+|..|-. |+.+-.+..-+|+ .++|-..-
T Consensus 891 v~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------~fs~VrI~C~qGk-~~kAa~iA 961 (1416)
T KOG3617|consen 891 VFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--------YFSMVRIKCIQGK-TDKAARIA 961 (1416)
T ss_pred HHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--------hhhheeeEeeccC-chHHHHHH
Confidence 12222 2346677789888999999999999988743 6777777777888 88776666
Q ss_pred ------HHHHhhHHHHHHcCCCCcchHHHHHHHhhh
Q psy8160 260 ------NKYRDLGDFLVINNIPTSNNNRQCYNSYST 289 (324)
Q Consensus 260 ------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~ 289 (324)
.+-+.||..|+..|++.+ |+.+|.+|-.
T Consensus 962 ~esgd~AAcYhlaR~YEn~g~v~~--Av~FfTrAqa 995 (1416)
T KOG3617|consen 962 EESGDKAACYHLARMYENDGDVVK--AVKFFTRAQA 995 (1416)
T ss_pred HhcccHHHHHHHHHHhhhhHHHHH--HHHHHHHHHH
Confidence 677888999999999999 9988877654
|
|
| >KOG2471|consensus | Back alignment and domain information |
|---|
Probab=98.53 E-value=1e-05 Score=69.82 Aligned_cols=153 Identities=16% Similarity=0.180 Sum_probs=115.3
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHH-HHhcCCCccc----HHHHHHHH
Q psy8160 55 LRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLC-LIDASPCTFT----KLEVRFHI 128 (324)
Q Consensus 55 ~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~-l~~~~~~~~~----~~~~~~~l 128 (324)
..--..+..+.+...+..-.+.++ +..+......+.+..++..|++..|.+.+... +...+....+ ..-.+.++
T Consensus 210 ~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNl 289 (696)
T KOG2471|consen 210 LYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNL 289 (696)
T ss_pred HhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCc
Confidence 333445677788888888888888 66777778888899999999999999976654 2222221111 22346789
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhc---------CCCC-----CchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHh
Q psy8160 129 AHLHEVQRKYKTAKDSYEQLLKE---------DDLP-----VHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSI 194 (324)
Q Consensus 129 a~~~~~~~~~~~A~~~~~~al~~---------~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al 194 (324)
|-+++..|.|.-+..+|.+++.. .+.| .+...+++++.|..+.. .|++-.|.++|.++.
T Consensus 290 GcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh-------~grPl~AfqCf~~av 362 (696)
T KOG2471|consen 290 GCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLH-------SGRPLLAFQCFQKAV 362 (696)
T ss_pred ceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHh-------cCCcHHHHHHHHHHH
Confidence 99999999999999999999851 1001 11114588899988865 559999999999999
Q ss_pred hhCCccHHHHHHHHHHHHHc
Q psy8160 195 EADPKSGQSLYLLGRCFAAV 214 (324)
Q Consensus 195 ~~~~~~~~~~~~lg~~~~~~ 214 (324)
.....+|..|..++.|++..
T Consensus 363 ~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 363 HVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHHhcCcHHHHHHHHHHHHH
Confidence 99999999999999998764
|
|
| >KOG1586|consensus | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.4e-05 Score=60.44 Aligned_cols=137 Identities=12% Similarity=0.055 Sum_probs=94.1
Q ss_pred HhcccHHHHHHHHHHHHHhcCCCcc--cHHHHHHHHHHHHHHh-hcHHHHHHHHHHHHhcCCCCCch--hhHHHHHHHHH
Q psy8160 95 KVNNEYDSALKHLTLCLIDASPCTF--TKLEVRFHIAHLHEVQ-RKYKTAKDSYEQLLKEDDLPVHL--KADICRQLGWM 169 (324)
Q Consensus 95 ~~~~~~~~A~~~~~~~l~~~~~~~~--~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~l~~~ 169 (324)
...++..+|..++++++........ ..+.-+..+|.+|... .++++|+.+|+++-+-....... --..+...+..
T Consensus 84 ykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~y 163 (288)
T KOG1586|consen 84 YKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQY 163 (288)
T ss_pred hhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHH
Confidence 3445888999999988876444331 1123355678888876 89999999999997655211110 01233333333
Q ss_pred HHhhhhhcccchhHHHHHHHHHHHhhhCCccH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q psy8160 170 YHCIDTLGEKSHRETLAIHCLQKSIEADPKSG-------QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTW 238 (324)
Q Consensus 170 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 238 (324)
--. .++|.+|+..|++.....-+++ ..++.-|.|++...+.-.+...+++-.+++|...+..
T Consensus 164 aa~-------leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsR 232 (288)
T KOG1586|consen 164 AAQ-------LEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSR 232 (288)
T ss_pred HHH-------HHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccH
Confidence 322 4499999999999876655544 4556678999999999999999999999999876553
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.8e-05 Score=57.13 Aligned_cols=125 Identities=19% Similarity=0.177 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCc--c
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPK--S 200 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--~ 200 (324)
.-.+.+|......|++.+|...|++++.--- -.+ +..+..++...+. ++++..|...+++..+.+|. +
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qalsG~f-A~d--~a~lLglA~Aqfa-------~~~~A~a~~tLe~l~e~~pa~r~ 159 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALSGIF-AHD--AAMLLGLAQAQFA-------IQEFAAAQQTLEDLMEYNPAFRS 159 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhcccc-CCC--HHHHHHHHHHHHh-------hccHHHHHHHHHHHhhcCCccCC
Confidence 3456667777777777777777777664210 222 3355555555544 44677777777777666653 4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 201 GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 201 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
|+....+|+++...|++.+|...|+.++..-|+ +.+....+.-+.++|+ ..+|...+
T Consensus 160 pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr-~~ea~aq~ 216 (251)
T COG4700 160 PDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGR-LREANAQY 216 (251)
T ss_pred CCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcc-hhHHHHHH
Confidence 566666777777777777777777777776663 5555666666667776 66665555
|
|
| >KOG3081|consensus | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.4e-05 Score=61.01 Aligned_cols=164 Identities=16% Similarity=0.082 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Q psy8160 53 VHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLH 132 (324)
Q Consensus 53 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~ 132 (324)
.+..-|.+|.+.+++++|++.... ..+..+.-+--.++....+.+-|.+..++......+ .++.+||..+
T Consensus 110 ~~l~aa~i~~~~~~~deAl~~~~~----~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided------~tLtQLA~aw 179 (299)
T KOG3081|consen 110 DLLLAAIIYMHDGDFDEALKALHL----GENLEAAALNVQILLKMHRFDLAEKELKKMQQIDED------ATLTQLAQAW 179 (299)
T ss_pred HHHHhhHHhhcCCChHHHHHHHhc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH------HHHHHHHHHH
Confidence 455667889999999999999885 233344444566777888999999988888765544 3455666555
Q ss_pred HHh----hcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHH
Q psy8160 133 EVQ----RKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLG 208 (324)
Q Consensus 133 ~~~----~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg 208 (324)
... +....|.-+|+..-+.. |+. ..++.+.+.++.+ ++++++|...++.++..++++|+++.++-
T Consensus 180 v~la~ggek~qdAfyifeE~s~k~--~~T--~~llnG~Av~~l~-------~~~~eeAe~lL~eaL~kd~~dpetL~Nli 248 (299)
T KOG3081|consen 180 VKLATGGEKIQDAFYIFEELSEKT--PPT--PLLLNGQAVCHLQ-------LGRYEEAESLLEEALDKDAKDPETLANLI 248 (299)
T ss_pred HHHhccchhhhhHHHHHHHHhccc--CCC--hHHHccHHHHHHH-------hcCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 433 46788888999887766 554 3488888888877 55999999999999999999999999999
Q ss_pred HHHHHcCCHHHHH-HHHHHHHccCCCCHHH
Q psy8160 209 RCFAAVGKVHDAF-LAYRNSVEKSEGNADT 237 (324)
Q Consensus 209 ~~~~~~~~~~~A~-~~~~~al~~~p~~~~~ 237 (324)
.+-...|...++. ....+....+|+++-.
T Consensus 249 v~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 249 VLALHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred HHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 9988888876655 5566777778887643
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.43 E-value=7.4e-07 Score=59.13 Aligned_cols=65 Identities=20% Similarity=0.401 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhC----Cc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q psy8160 160 ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEAD----PK---SGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKS 231 (324)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----~~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 231 (324)
+.++..+|.+|.. .+++++|+.+|++++++. +. ...++.++|.++...|++++|+.++++++++.
T Consensus 5 a~~~~~la~~~~~-------~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 5 ANAYNNLARVYRE-------LGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHH-------TT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 5689999999977 559999999999998652 22 24678999999999999999999999998753
|
... |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.5e-06 Score=75.10 Aligned_cols=67 Identities=18% Similarity=0.217 Sum_probs=61.6
Q ss_pred CCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHH---HHHHHHHHHHcCCHHHHHHHHHHHHcc
Q psy8160 155 PVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQS---LYLLGRCFAAVGKVHDAFLAYRNSVEK 230 (324)
Q Consensus 155 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~lg~~~~~~~~~~~A~~~~~~al~~ 230 (324)
|++ +.+++++|..++. .+++++|+..|+++++++|++.++ |+++|.+|..+|++++|+.++++|+++
T Consensus 72 P~~--a~a~~NLG~AL~~-------lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKT--AEDAVNLGLSLFS-------KGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCC--HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 554 6699999999977 559999999999999999999865 999999999999999999999999997
|
|
| >KOG2053|consensus | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00023 Score=65.97 Aligned_cols=238 Identities=16% Similarity=0.085 Sum_probs=141.2
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTL 109 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 109 (324)
.+|+.-..++++..|+.+ -+...-|....++|..++|..+++..- ..+++......+-.+|...+++++|..+|++
T Consensus 26 kkal~~~~kllkk~Pn~~---~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~ 102 (932)
T KOG2053|consen 26 KKALAKLGKLLKKHPNAL---YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYER 102 (932)
T ss_pred HHHHHHHHHHHHHCCCcH---HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 788888888888887633 345566778888888888887776555 6666667777788888888888888888888
Q ss_pred HHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchh----HHH
Q psy8160 110 CLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHR----ETL 185 (324)
Q Consensus 110 ~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~ 185 (324)
++...|. . +....+=.+|.+.+.|.+-...--+..+.. |+.. ...|.-+..+.... .+..... ..-
T Consensus 103 ~~~~~P~-e----ell~~lFmayvR~~~yk~qQkaa~~LyK~~--pk~~-yyfWsV~Slilqs~--~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 103 ANQKYPS-E----ELLYHLFMAYVREKSYKKQQKAALQLYKNF--PKRA-YYFWSVISLILQSI--FSENELLDPILLAL 172 (932)
T ss_pred HHhhCCc-H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--Cccc-chHHHHHHHHHHhc--cCCcccccchhHHH
Confidence 8887776 3 566666666777777765544444444444 5441 22344444333221 1111111 123
Q ss_pred HHHHHHHHhhhC-CccH--HHHHHHHHHHHHcCCHHHHHHHHH-HHHccCC-CCHHHHHHhHHHHhhcCCCHHHHHHHHH
Q psy8160 186 AIHCLQKSIEAD-PKSG--QSLYLLGRCFAAVGKVHDAFLAYR-NSVEKSE-GNADTWCSIGNKDFSNNSNREDYHQALN 260 (324)
Q Consensus 186 A~~~~~~al~~~-~~~~--~~~~~lg~~~~~~~~~~~A~~~~~-~al~~~p-~~~~~~~~lg~~~~~~~~~~~~A~~~~~ 260 (324)
|....++.++.. +-.. +.. ..-.+....|++++|+..+. ...+..+ .+...-...+..+...++ |.+-
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~-Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~-w~~l----- 245 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEII-LYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNR-WQEL----- 245 (932)
T ss_pred HHHHHHHHhccCCccchHHHHH-HHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcC-hHHH-----
Confidence 445555555544 2221 222 22345667788888888873 3233333 333333344566666677 6553
Q ss_pred HHHhhHHHHHHcCC-CCcchHHHHHHHhhhcC
Q psy8160 261 KYRDLGDFLVINNI-PTSNNNRQCYNSYSTSI 291 (324)
Q Consensus 261 ~~~~lg~~~~~~~~-~~~~~A~~~~~~al~~~ 291 (324)
..-.+.+..+.++ |.. +.+.+.++++..
T Consensus 246 -~~l~~~Ll~k~~Ddy~~--~~~sv~klLe~~ 274 (932)
T KOG2053|consen 246 -FELSSRLLEKGNDDYKI--YTDSVFKLLELL 274 (932)
T ss_pred -HHHHHHHHHhCCcchHH--HHHHHHHHHHhc
Confidence 2223444445554 667 778777777765
|
|
| >KOG2796|consensus | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00014 Score=58.09 Aligned_cols=126 Identities=14% Similarity=0.061 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhh----C-
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEA----D- 197 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~- 197 (324)
.+.+.+..++...|+|.-+++.+.++++.+ |.. ++.....+|.+.++ .|+.+.|..++++.-+. +
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~--~e~-~p~L~s~Lgr~~MQ-------~GD~k~a~~yf~~vek~~~kL~~ 247 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYY--PEQ-EPQLLSGLGRISMQ-------IGDIKTAEKYFQDVEKVTQKLDG 247 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhC--Ccc-cHHHHHHHHHHHHh-------cccHHHHHHHHHHHHHHHhhhhc
Confidence 456666777777788888888888877765 332 25567777777766 44677777777744321 1
Q ss_pred -CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 198 -PKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 198 -~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
.....+..+.+.++...+++.+|...|.+++..||.++.+..+-+.|....|+ ..+|++..
T Consensus 248 ~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~-l~DAiK~~ 309 (366)
T KOG2796|consen 248 LQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGK-LKDALKQL 309 (366)
T ss_pred cchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHH-HHHHHHHH
Confidence 12234555667777777788888888888888888888777777777777777 66666655
|
|
| >KOG2796|consensus | Back alignment and domain information |
|---|
Probab=98.38 E-value=6.4e-05 Score=60.05 Aligned_cols=134 Identities=13% Similarity=0.102 Sum_probs=110.5
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc----CCCCCchhhHHHHH
Q psy8160 90 EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKE----DDLPVHLKADICRQ 165 (324)
Q Consensus 90 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~~~~~ 165 (324)
+..++.-.|+|.-+...+.+++..+|+.. +.....+|.+..+.||.+.|..+|+++-+. +..... ..+..+
T Consensus 183 ~~~~llG~kEy~iS~d~~~~vi~~~~e~~---p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~--~~V~~n 257 (366)
T KOG2796|consen 183 MANCLLGMKEYVLSVDAYHSVIKYYPEQE---PQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGK--IMVLMN 257 (366)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHhCCccc---HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchh--HHHHhh
Confidence 56777778999999999999998775554 367788999999999999999999965433 322222 336666
Q ss_pred HHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q psy8160 166 LGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNA 235 (324)
Q Consensus 166 l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 235 (324)
.+.+|.. .+++..|...+.+++..||.++.+-.+.+.|..-.|+..+|++..+.++...|...
T Consensus 258 ~a~i~lg-------~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 258 SAFLHLG-------QNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhhheec-------ccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 7777744 45899999999999999999999999999999999999999999999999999753
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.9e-07 Score=49.37 Aligned_cols=32 Identities=19% Similarity=0.390 Sum_probs=16.9
Q ss_pred HHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHH
Q psy8160 224 YRNSVEKSEGNADTWCSIGNKDFSNNSNREDYH 256 (324)
Q Consensus 224 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~ 256 (324)
|+++++++|+++.+|+++|.+|...|+ +++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~-~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGD-YEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcC-HHhhc
Confidence 445555555555555555555555555 55543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00024 Score=53.87 Aligned_cols=128 Identities=14% Similarity=0.140 Sum_probs=67.4
Q ss_pred hHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHH
Q psy8160 87 TKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQL 166 (324)
Q Consensus 87 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l 166 (324)
...+|......|++.+|..+|++++.-.-.. .+..+..++...+..+++..|...+++..+-+ |....++....+
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~---d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~~Ll~ 166 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSGIFAH---DAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDGHLLF 166 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhccccCC---CHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCchHHH
Confidence 3345555566666666666666665321111 12445555566666666666666666655554 333223444555
Q ss_pred HHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy8160 167 GWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNS 227 (324)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 227 (324)
|+.+.. .|++.+|...|+.++...| .+.+....+..+..+|+.++|...+...
T Consensus 167 aR~laa-------~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 167 ARTLAA-------QGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHh-------cCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 555533 2356666666666665554 3444555555556666555555544443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.33 E-value=5.6e-07 Score=48.74 Aligned_cols=34 Identities=24% Similarity=0.499 Sum_probs=31.7
Q ss_pred HHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHH
Q psy8160 189 CLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFL 222 (324)
Q Consensus 189 ~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~ 222 (324)
+|+++++++|+++.+|+++|.++...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4789999999999999999999999999999863
|
|
| >KOG1585|consensus | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00026 Score=56.04 Aligned_cols=27 Identities=19% Similarity=0.141 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHH
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLL 149 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al 149 (324)
..+..-+.+|...++|++|..++.++.
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 444444555555555555555555555
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.7e-06 Score=47.07 Aligned_cols=34 Identities=24% Similarity=0.494 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q psy8160 201 GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN 234 (324)
Q Consensus 201 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 234 (324)
+.+|+.+|.++..+|++++|+..|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999974
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG1585|consensus | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00078 Score=53.40 Aligned_cols=231 Identities=10% Similarity=-0.014 Sum_probs=146.7
Q ss_pred HHHHHHHHHhc-cCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCc------hhhHHHHHHHHhcccHHHH
Q psy8160 32 KAIKTFQQLLY-VDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPC------TFTKLEGLMFKVNNEYDSA 103 (324)
Q Consensus 32 ~A~~~~~~~l~-~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~------~~~~~la~~~~~~~~~~~A 103 (324)
++.+...+... -.|++......+..-+.+|...++|++|..++.+++ -...+. .++...+.+......+.++
T Consensus 11 ea~e~~a~t~~~wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEv 90 (308)
T KOG1585|consen 11 EADEMTALTLTRWKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEV 90 (308)
T ss_pred HHHHHHHHHhhccCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34444333333 457777778889999999999999999999999998 333322 2234457777788899999
Q ss_pred HHHHHHHHHhcCCCc--ccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchh--hHHHHHHHHHHHhhhhhccc
Q psy8160 104 LKHLTLCLIDASPCT--FTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK--ADICRQLGWMYHCIDTLGEK 179 (324)
Q Consensus 104 ~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~ 179 (324)
...|+++......+. .+.+.++-.-|.+. ...++++|+..|++++..-...+..+ .+.+...+.++..
T Consensus 91 vdl~eKAs~lY~E~GspdtAAmaleKAak~l-env~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr------- 162 (308)
T KOG1585|consen 91 VDLYEKASELYVECGSPDTAAMALEKAAKAL-ENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR------- 162 (308)
T ss_pred HHHHHHHHHHHHHhCCcchHHHHHHHHHHHh-hcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh-------
Confidence 999999966533222 23334444445544 44579999999999987642222222 3345555566644
Q ss_pred chhHHHHHHHHHHHhh----h--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC----CCCHHHHHHhHHHHhhcC
Q psy8160 180 SHRETLAIHCLQKSIE----A--DPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKS----EGNADTWCSIGNKDFSNN 249 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~----~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~~ 249 (324)
...+.+|-..+.+-.. . .+.....+...-.+|....+|..|..+|+..-++. |++..+.-+|-..| ..|
T Consensus 163 l~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~g 241 (308)
T KOG1585|consen 163 LEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEG 241 (308)
T ss_pred hHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccC
Confidence 3377777766666432 2 23333455555566777789999999999976643 44555666664444 456
Q ss_pred CCHHHHHHHH--HHHHhhHHHHHHc
Q psy8160 250 SNREDYHQAL--NKYRDLGDFLVIN 272 (324)
Q Consensus 250 ~~~~~A~~~~--~~~~~lg~~~~~~ 272 (324)
+ .++..+.+ .+..++-+-|.+.
T Consensus 242 D-~E~~~kvl~sp~~r~MDneya~l 265 (308)
T KOG1585|consen 242 D-IEEIKKVLSSPTVRNMDNEYAHL 265 (308)
T ss_pred C-HHHHHHHHcChHhhhhhHHHHHH
Confidence 6 77777776 4444444444433
|
|
| >KOG1550|consensus | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.0008 Score=62.01 Aligned_cols=175 Identities=22% Similarity=0.285 Sum_probs=123.5
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHh-----ccHHHHHHHHHHHhc------CCCCchhhHHHHHHHHhcc-
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVN-----NEYDSALKHLTLCLI------DASPCTFTKLEGLMFKVNN- 98 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~-----~~~~~A~~~~~~al~------~~~~~~~~~~la~~~~~~~- 98 (324)
..|..+|+.+-+.. ...+...+|.||..- .|.+.|+.+|+.+.. .-....+...+|.+|....
T Consensus 229 ~~a~~~~~~~a~~g-----~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 229 SEAFKYYREAAKLG-----HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hHHHHHHHHHHhhc-----chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCC
Confidence 46788888777665 455778889888753 689999999998852 1224446667888888753
Q ss_pred ----cHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhh---cHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHH
Q psy8160 99 ----EYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQR---KYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYH 171 (324)
Q Consensus 99 ----~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~ 171 (324)
++..|.+.|.++-....+ ++.+.+|.++.... +...|..+|..+.... + ..+.+.++.+|.
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~~------~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G----~--~~A~~~la~~y~ 371 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGNP------DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG----H--ILAIYRLALCYE 371 (552)
T ss_pred CccccHHHHHHHHHHHHhcCCc------hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC----C--hHHHHHHHHHHH
Confidence 788899999988765444 56889999988665 5789999999998765 2 338899999996
Q ss_pred hhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Q psy8160 172 CIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAV-GKVHDAFLAYRNS 227 (324)
Q Consensus 172 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~-~~~~~A~~~~~~a 227 (324)
.- .| ...+...|..++.++.+.. ++.+.+.++..+... +.++.+...+...
T Consensus 372 ~G--~g-v~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~ 423 (552)
T KOG1550|consen 372 LG--LG-VERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYL 423 (552)
T ss_pred hC--CC-cCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHH
Confidence 63 11 1337889999999998887 455555555444433 5555554444333
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.4e-06 Score=45.82 Aligned_cols=34 Identities=21% Similarity=0.493 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q psy8160 201 GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN 234 (324)
Q Consensus 201 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 234 (324)
+.+|+.+|.++...|++++|+.+|++++.++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999985
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG4555|consensus | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.2e-05 Score=54.87 Aligned_cols=89 Identities=9% Similarity=0.088 Sum_probs=68.5
Q ss_pred chhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH----HHHHHhHHHHhhcCCCHHHH
Q psy8160 180 SHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNA----DTWCSIGNKDFSNNSNREDY 255 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~~~~~~~A 255 (324)
-++.+.|++.|.+++.+.|..+.+|.+.+..+.-+|+.++|+.-+++++++..... .+++..|.+|...|+ -+.|
T Consensus 56 ~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~-dd~A 134 (175)
T KOG4555|consen 56 AGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN-DDAA 134 (175)
T ss_pred ccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc-hHHH
Confidence 44889999999999999999999999999999999999999999999998765443 345566777777777 6666
Q ss_pred HHHHHHHHhhHHHH
Q psy8160 256 HQALNKYRDLGDFL 269 (324)
Q Consensus 256 ~~~~~~~~~lg~~~ 269 (324)
...|+.-..||.-+
T Consensus 135 R~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 135 RADFEAAAQLGSKF 148 (175)
T ss_pred HHhHHHHHHhCCHH
Confidence 66665555555433
|
|
| >KOG2471|consensus | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.2e-05 Score=67.82 Aligned_cols=122 Identities=13% Similarity=0.064 Sum_probs=102.7
Q ss_pred hHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH-HccCCC--------CHHHHHHhHHHHhhcCCCH
Q psy8160 182 RETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNS-VEKSEG--------NADTWCSIGNKDFSNNSNR 252 (324)
Q Consensus 182 ~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a-l~~~p~--------~~~~~~~lg~~~~~~~~~~ 252 (324)
+...+..-.+.++....+++.+....++.++..|++.+|.+.+... +...|. ...+|.++|.++++.+. |
T Consensus 221 ~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~-y 299 (696)
T KOG2471|consen 221 NLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGC-Y 299 (696)
T ss_pred HHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhh-H
Confidence 5666777777777777888899999999999999999999987554 222333 23467899999999999 9
Q ss_pred HHHHHHH-----------------------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhh
Q psy8160 253 EDYHQAL-----------------------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDF 303 (324)
Q Consensus 253 ~~A~~~~-----------------------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 303 (324)
.-+...| ++.++.|..|...|++.. |.++|.++......+|.+|-+++.
T Consensus 300 ~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~--AfqCf~~av~vfh~nPrlWLRlAE 377 (696)
T KOG2471|consen 300 QASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLL--AFQCFQKAVHVFHRNPRLWLRLAE 377 (696)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHH--HHHHHHHHHHHHhcCcHHHHHHHH
Confidence 8877776 889999999999999999 999999999999999999999987
Q ss_pred hcc
Q psy8160 304 SNN 306 (324)
Q Consensus 304 ~~~ 306 (324)
-+.
T Consensus 378 cCi 380 (696)
T KOG2471|consen 378 CCI 380 (696)
T ss_pred HHH
Confidence 665
|
|
| >KOG4642|consensus | Back alignment and domain information |
|---|
Probab=98.16 E-value=9.9e-06 Score=63.53 Aligned_cols=79 Identities=13% Similarity=0.149 Sum_probs=75.9
Q ss_pred chhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 180 SHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
..++..|+.+|.+++.++|..+..|.+.+.|+++.++++.+....+++++++|+.....+.+|.+..+... +++||..+
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~-~~eaI~~L 101 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKG-YDEAIKVL 101 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcc-ccHHHHHH
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999 99999988
|
|
| >KOG4642|consensus | Back alignment and domain information |
|---|
Probab=98.14 E-value=7e-06 Score=64.38 Aligned_cols=91 Identities=13% Similarity=0.169 Sum_probs=80.4
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHH
Q psy8160 129 AHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLG 208 (324)
Q Consensus 129 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg 208 (324)
|..++...+|..|+++|.++|.++ |.. +..+.+.+.++++ ..+++.+....+++++++|+.....+.+|
T Consensus 17 gnk~f~~k~y~~ai~~y~raI~~n--P~~--~~Y~tnralchlk-------~~~~~~v~~dcrralql~~N~vk~h~flg 85 (284)
T KOG4642|consen 17 GNKCFIPKRYDDAIDCYSRAICIN--PTV--ASYYTNRALCHLK-------LKHWEPVEEDCRRALQLDPNLVKAHYFLG 85 (284)
T ss_pred cccccchhhhchHHHHHHHHHhcC--CCc--chhhhhHHHHHHH-------hhhhhhhhhhHHHHHhcChHHHHHHHHHH
Confidence 677778888999999999999999 765 4588888999987 44899999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHcc
Q psy8160 209 RCFAAVGKVHDAFLAYRNSVEK 230 (324)
Q Consensus 209 ~~~~~~~~~~~A~~~~~~al~~ 230 (324)
.+......+++|+..+.+|..+
T Consensus 86 ~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 86 QWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHHHhhccccHHHHHHHHHHHH
Confidence 9999999999999999999654
|
|
| >KOG2300|consensus | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0047 Score=53.89 Aligned_cols=116 Identities=20% Similarity=0.289 Sum_probs=95.0
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHH-HHHhccHHHHHHHHHHHh-cC---CCCc----hhhHHHHHHHHhcc-cH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLM-FKVNNEYDSALKHLTLCL-ID---ASPC----TFTKLEGLMFKVNN-EY 100 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~-~~~~~~~~~A~~~~~~al-~~---~~~~----~~~~~la~~~~~~~-~~ 100 (324)
.++++..+..+...|.+...+..+..+|.+ +....+++.|..+++++. +- |+.. .+..++++++.... .+
T Consensus 26 kk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~ 105 (629)
T KOG2300|consen 26 KKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSF 105 (629)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCC
Confidence 789999999999998776666778899876 457889999999999998 43 4442 23445888888877 78
Q ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHH
Q psy8160 101 DSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYE 146 (324)
Q Consensus 101 ~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 146 (324)
..+...+.+++......+.......++++.++...+++..|++.+.
T Consensus 106 ~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLa 151 (629)
T KOG2300|consen 106 PPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLA 151 (629)
T ss_pred chHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHh
Confidence 9999999999988777777777889999999999999999998843
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00031 Score=61.33 Aligned_cols=171 Identities=13% Similarity=0.031 Sum_probs=111.5
Q ss_pred HHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc-----------
Q psy8160 132 HEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS----------- 200 (324)
Q Consensus 132 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~----------- 200 (324)
.....+...-++.-++|++++ |+. ++++.-++.-... ...+|+.+++++++.....
T Consensus 178 AWRERnp~aRIkaA~eALei~--pdC--AdAYILLAEEeA~---------Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g 244 (539)
T PF04184_consen 178 AWRERNPQARIKAAKEALEIN--PDC--ADAYILLAEEEAS---------TIVEAEELLRQAVKAGEASLGKSQFLQHHG 244 (539)
T ss_pred HHhcCCHHHHHHHHHHHHHhh--hhh--hHHHhhccccccc---------CHHHHHHHHHHHHHHHHHhhchhhhhhccc
Confidence 456677888888889999998 776 4466665542211 3455666666655431110
Q ss_pred --------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC--CHHHHHHhHHHHhhcCCCHHHHHHHH-----
Q psy8160 201 --------------GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEG--NADTWCSIGNKDFSNNSNREDYHQAL----- 259 (324)
Q Consensus 201 --------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~~~A~~~~----- 259 (324)
..+...+|.|..+.|+.++|++.++..++..|. +..+..+|..++...+. |.++...+
T Consensus 245 ~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~-Yad~q~lL~kYdD 323 (539)
T PF04184_consen 245 HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQA-YADVQALLAKYDD 323 (539)
T ss_pred chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCC-HHHHHHHHHHhcc
Confidence 134567899999999999999999999988775 46688999999999999 99998777
Q ss_pred -------HHHHhhHHHH-HHcCCC-------------CcchHHHHHHHhhhcCCChhhhhhchhhhc-----cCChhhHH
Q psy8160 260 -------NKYRDLGDFL-VINNIP-------------TSNNNRQCYNSYSTSIASCKHINNNKDFSN-----NSNREDYH 313 (324)
Q Consensus 260 -------~~~~~lg~~~-~~~~~~-------------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-----~~~~~~~~ 313 (324)
...+.-+.+- +..++. .+..|++...+|++.+|.-|...-.+.-+- ...+|| .
T Consensus 324 i~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilPPehilkrGD-S 402 (539)
T PF04184_consen 324 ISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGD-S 402 (539)
T ss_pred ccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCChHHhcCCCc-H
Confidence 1112222221 111111 111377899999999998776544333221 155665 5
Q ss_pred HHHH
Q psy8160 314 QALN 317 (324)
Q Consensus 314 ~a~~ 317 (324)
+|+.
T Consensus 403 EAia 406 (539)
T PF04184_consen 403 EAIA 406 (539)
T ss_pred HHHH
Confidence 5543
|
The molecular function of this protein is uncertain. |
| >KOG2053|consensus | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0087 Score=56.02 Aligned_cols=214 Identities=13% Similarity=-0.059 Sum_probs=147.8
Q ss_pred HHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHH
Q psy8160 62 KVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKT 140 (324)
Q Consensus 62 ~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 140 (324)
...++|.+|+....+.+ ..|+...+..+.|.+....|+.++|..+++..-...+.+ ...+..+-.||..++++++
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D----~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTD----DLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCc----hHHHHHHHHHHHHHhhhhH
Confidence 45689999999999999 999999999999999999999999997776543333332 2567778899999999999
Q ss_pred HHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCH---
Q psy8160 141 AKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKV--- 217 (324)
Q Consensus 141 A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~--- 217 (324)
|..+|++++..+ |+ .+ ...++=.+|.+. ++-..+.+.|++.|+..=+.. . ..|.-+..+.......
T Consensus 96 ~~~~Ye~~~~~~--P~-ee--ll~~lFmayvR~---~~yk~qQkaa~~LyK~~pk~~-y--yfWsV~Slilqs~~~~~~~ 164 (932)
T KOG2053|consen 96 AVHLYERANQKY--PS-EE--LLYHLFMAYVRE---KSYKKQQKAALQLYKNFPKRA-Y--YFWSVISLILQSIFSENEL 164 (932)
T ss_pred HHHHHHHHHhhC--Cc-HH--HHHHHHHHHHHH---HHHHHHHHHHHHHHHhCCccc-c--hHHHHHHHHHHhccCCccc
Confidence 999999999999 87 44 444443344321 111335666777777664332 1 2333333333333222
Q ss_pred ------HHHHHHHHHHHccC-CCC--HHHHHHhHHHHhhcCCCHHHHHHHH-------------HHHHhhHHHHHHcCCC
Q psy8160 218 ------HDAFLAYRNSVEKS-EGN--ADTWCSIGNKDFSNNSNREDYHQAL-------------NKYRDLGDFLVINNIP 275 (324)
Q Consensus 218 ------~~A~~~~~~al~~~-p~~--~~~~~~lg~~~~~~~~~~~~A~~~~-------------~~~~~lg~~~~~~~~~ 275 (324)
.-|...+++.++.. +-. .+... .-.+....|. +++|...+ ..-...+..+...+++
T Consensus 165 ~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~L-yl~iL~~~~k-~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w 242 (932)
T KOG2053|consen 165 LDPILLALAEKMVQKLLEKKGKIESEAEIIL-YLLILELQGK-YQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRW 242 (932)
T ss_pred ccchhHHHHHHHHHHHhccCCccchHHHHHH-HHHHHHhccc-HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcCh
Confidence 23566777777666 322 22222 2345667888 99999888 1122456778888999
Q ss_pred CcchHHHHHHHhhhcCCCh
Q psy8160 276 TSNNNRQCYNSYSTSIASC 294 (324)
Q Consensus 276 ~~~~A~~~~~~al~~~p~~ 294 (324)
.+ -.+.-.+++..+|+|
T Consensus 243 ~~--l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 243 QE--LFELSSRLLEKGNDD 259 (932)
T ss_pred HH--HHHHHHHHHHhCCcc
Confidence 99 999999999999997
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.7e-06 Score=46.27 Aligned_cols=33 Identities=12% Similarity=0.040 Sum_probs=29.7
Q ss_pred HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCCh
Q psy8160 260 NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASC 294 (324)
Q Consensus 260 ~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (324)
.+|+++|.+|..+|++++ |+.+|++|++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~--A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEE--ALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHH--HHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchH--HHHHHHHHHHHCcCC
Confidence 478999999999999999 999999999999985
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.09 E-value=3.5e-06 Score=48.82 Aligned_cols=42 Identities=5% Similarity=-0.153 Sum_probs=38.1
Q ss_pred HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhh
Q psy8160 260 NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDF 303 (324)
Q Consensus 260 ~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 303 (324)
.+|..+|.+|...|++++ |++.|+++++.+|+|+.++..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~--A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDE--AERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHH--HHHHHHHHHHHCcCCHHHHHHhhh
Confidence 368899999999999999 999999999999999999887753
|
|
| >KOG2610|consensus | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0005 Score=57.02 Aligned_cols=146 Identities=12% Similarity=0.045 Sum_probs=102.9
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhh-CCccH---HHH
Q psy8160 129 AHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEA-DPKSG---QSL 204 (324)
Q Consensus 129 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~~~~~---~~~ 204 (324)
+-+.+..|++-+|-...+++++.. |.+..+.-...-+..| .|+...-...+++++.. +|+-| ...
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~--PtDlla~kfsh~a~fy---------~G~~~~~k~ai~kIip~wn~dlp~~sYv~ 178 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDY--PTDLLAVKFSHDAHFY---------NGNQIGKKNAIEKIIPKWNADLPCYSYVH 178 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhC--chhhhhhhhhhhHHHh---------ccchhhhhhHHHHhccccCCCCcHHHHHH
Confidence 344566778888888888888887 8775533333333333 33666677778887766 55544 222
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH---------------HHHHhhHHHH
Q psy8160 205 YLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL---------------NKYRDLGDFL 269 (324)
Q Consensus 205 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~---------------~~~~~lg~~~ 269 (324)
-.++.++.+.|-|++|.+..+++++++|.+..+.-..+.++...++ +.++.+.. .-|...+.++
T Consensus 179 GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r-~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~ 257 (491)
T KOG2610|consen 179 GMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGR-HKEGKEFMYKTEDDWRQSWMLASHNYWHTALFH 257 (491)
T ss_pred HHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcch-hhhHHHHHHhcccchhhhhHHHhhhhHHHHHhh
Confidence 2345667778888888888888888888888888888888888888 88888776 3445567777
Q ss_pred HHcCCCCcchHHHHHHHhh
Q psy8160 270 VINNIPTSNNNRQCYNSYS 288 (324)
Q Consensus 270 ~~~~~~~~~~A~~~~~~al 288 (324)
...+.++. |++.|.+-+
T Consensus 258 iE~aeye~--aleIyD~ei 274 (491)
T KOG2610|consen 258 IEGAEYEK--ALEIYDREI 274 (491)
T ss_pred hcccchhH--HHHHHHHHH
Confidence 77788888 888886654
|
|
| >KOG0551|consensus | Back alignment and domain information |
|---|
Probab=98.06 E-value=7.4e-05 Score=61.61 Aligned_cols=105 Identities=13% Similarity=0.098 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH
Q psy8160 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG 201 (324)
Q Consensus 122 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 201 (324)
+.-+-.-|.-|+..++|..|+.+|.+.|+......++.+..|.+.+-+.+. .++|..|+....+++..+|.+.
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~-------l~NyRs~l~Dcs~al~~~P~h~ 153 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLY-------LGNYRSALNDCSAALKLKPTHL 153 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHH-------HHHHHHHHHHHHHHHhcCcchh
Confidence 344555578888888888888888888876632334456677777766655 4488888888888888888888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEG 233 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 233 (324)
.+++.-+.|++.+.++.+|..+++..+.++.+
T Consensus 154 Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 154 KAYIRGAKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 88888888888888888888888877766543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00046 Score=57.82 Aligned_cols=137 Identities=11% Similarity=0.017 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHh-cccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Q psy8160 53 VHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKV-NNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAH 130 (324)
Q Consensus 53 ~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~ 130 (324)
+|..+.....+.+..+.|...|.+|. ..+.....+...|.+-.. .++.+.|.+.|+.+++..+.+. +.|.....
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~----~~~~~Y~~ 78 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDP----DFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-H----HHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHH
Confidence 46666677777777888888888888 555666777777777555 5666678888888888777665 77777778
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCCCCch-hhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHH
Q psy8160 131 LHEVQRKYKTAKDSYEQLLKEDDLPVHL-KADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQ 202 (324)
Q Consensus 131 ~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 202 (324)
.+...++.+.|...|++++..- +... ...+|......-.. .|+.+......+++.+..|.+..
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l--~~~~~~~~iw~~~i~fE~~-------~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSL--PKEKQSKKIWKKFIEFESK-------YGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTS--SCHHHCHHHHHHHHHHHHH-------HS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHHhCcHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHHhhhhhH
Confidence 8888888888999999888764 5443 12344443333322 34777788888888888777543
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.5e-05 Score=43.14 Aligned_cols=32 Identities=22% Similarity=0.378 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCC
Q psy8160 52 EVHLRLGLMFKVNNEYDSALKHLTLCL-IDASP 83 (324)
Q Consensus 52 ~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~ 83 (324)
++++.+|.++..+|++++|+++|++++ ++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 578999999999999999999999999 88874
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00063 Score=61.25 Aligned_cols=180 Identities=15% Similarity=0.145 Sum_probs=122.1
Q ss_pred HHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHhc-C-CCCchhhHHH-------HHHHH---hcccHH
Q psy8160 34 IKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLI-D-ASPCTFTKLE-------GLMFK---VNNEYD 101 (324)
Q Consensus 34 ~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-~-~~~~~~~~~l-------a~~~~---~~~~~~ 101 (324)
.-.|+-++++-|. . ...+-.+.--.||-+.+++.+.++.. . -..+.+...+ ...+. ...+.+
T Consensus 177 ~G~f~L~lSlLPp--~----~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~ 250 (468)
T PF10300_consen 177 FGLFNLVLSLLPP--K----VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLE 250 (468)
T ss_pred HHHHHHHHHhCCH--H----HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHH
Confidence 3456666666652 1 23333333346888999999988872 2 2222221111 11111 244677
Q ss_pred HHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccch
Q psy8160 102 SALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSH 181 (324)
Q Consensus 102 ~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 181 (324)
.|.+.++......|.+. -..+..|.++...|+.++|++.|++++.....-.....-.++.++|++.. ..
T Consensus 251 ~a~~lL~~~~~~yP~s~----lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~-------~~ 319 (468)
T PF10300_consen 251 EAEELLEEMLKRYPNSA----LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF-------QH 319 (468)
T ss_pred HHHHHHHHHHHhCCCcH----HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH-------Hc
Confidence 88888888888878765 44666799999999999999999988853322333445688889999866 44
Q ss_pred hHHHHHHHHHHHhhhCCccH-HHHHHHHHHHHHcCCH-------HHHHHHHHHHHcc
Q psy8160 182 RETLAIHCLQKSIEADPKSG-QSLYLLGRCFAAVGKV-------HDAFLAYRNSVEK 230 (324)
Q Consensus 182 ~~~~A~~~~~~al~~~~~~~-~~~~~lg~~~~~~~~~-------~~A~~~~~~al~~ 230 (324)
+|++|..++.+..+.+.-+. ...|..|.|+...++. ++|...+.++-..
T Consensus 320 ~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 320 DWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 99999999999988766544 4456678889999988 8888888887544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2610|consensus | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0011 Score=55.14 Aligned_cols=157 Identities=7% Similarity=-0.046 Sum_probs=114.3
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc-CCCCCchhhHHHHHHHH
Q psy8160 90 EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKE-DDLPVHLKADICRQLGW 168 (324)
Q Consensus 90 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~l~~ 168 (324)
-+.+....|++.+|-..+++.++..|.+. -++-.--..++..|+.+.....+++++.. + ++.+- .-+.-|.
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDl----la~kfsh~a~fy~G~~~~~k~ai~kIip~wn--~dlp~--~sYv~Gm 180 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDL----LAVKFSHDAHFYNGNQIGKKNAIEKIIPKWN--ADLPC--YSYVHGM 180 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhh----hhhhhhhhHHHhccchhhhhhHHHHhccccC--CCCcH--HHHHHHH
Confidence 35566778999999999999999888775 23333445677888888888999999866 4 33211 1122233
Q ss_pred HHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC----HHHHHHhHHH
Q psy8160 169 MYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN----ADTWCSIGNK 244 (324)
Q Consensus 169 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~ 244 (324)
..+.....| -+++|.+.-+++++++|.+.-+...++.++...+++.++.++..+.-..-... ...|..-+.+
T Consensus 181 yaFgL~E~g----~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~ 256 (491)
T KOG2610|consen 181 YAFGLEECG----IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALF 256 (491)
T ss_pred HHhhHHHhc----cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHh
Confidence 333323333 78999999999999999999888889999999999999999887764433322 2234556888
Q ss_pred HhhcCCCHHHHHHHH
Q psy8160 245 DFSNNSNREDYHQAL 259 (324)
Q Consensus 245 ~~~~~~~~~~A~~~~ 259 (324)
+...+. |+.|+..|
T Consensus 257 ~iE~ae-ye~aleIy 270 (491)
T KOG2610|consen 257 HIEGAE-YEKALEIY 270 (491)
T ss_pred hhcccc-hhHHHHHH
Confidence 888899 99999999
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00056 Score=52.36 Aligned_cols=107 Identities=15% Similarity=0.127 Sum_probs=82.5
Q ss_pred HHHHHHHHhhhCCccH---HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 186 AIHCLQKSIEADPKSG---QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN---ADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 186 A~~~~~~al~~~~~~~---~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
.+...++....+|.+. -+-..++..+...+++++|+..++.++....+. +-+-.+|+.+..+.|+ +++|+..+
T Consensus 71 ~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k-~D~AL~~L 149 (207)
T COG2976 71 SIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKK-ADAALKTL 149 (207)
T ss_pred hHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhh-HHHHHHHH
Confidence 3333444444444433 344567889999999999999999998654433 3456789999999999 99999999
Q ss_pred ----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChh
Q psy8160 260 ----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCK 295 (324)
Q Consensus 260 ----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (324)
...-..|.++...|+..+ |+..|+++++.+++.+
T Consensus 150 ~t~~~~~w~~~~~elrGDill~kg~k~~--Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 150 DTIKEESWAAIVAELRGDILLAKGDKQE--ARAAYEKALESDASPA 193 (207)
T ss_pred hccccccHHHHHHHHhhhHHHHcCchHH--HHHHHHHHHHccCChH
Confidence 334567999999999999 9999999999986544
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0062 Score=51.50 Aligned_cols=172 Identities=20% Similarity=0.233 Sum_probs=124.7
Q ss_pred HHHhccHHHHHHHHHHHh--cCCCCchhhHHHHHHHHhc----ccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Q psy8160 61 FKVNNEYDSALKHLTLCL--IDASPCTFTKLEGLMFKVN----NEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEV 134 (324)
Q Consensus 61 ~~~~~~~~~A~~~~~~al--~~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~ 134 (324)
....+++..|...+..+. .++ .....++.+|... .+..+|...|+.+..... ..+.+.+|.++..
T Consensus 51 ~~~~~~~~~a~~~~~~a~~~~~~---~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~------~~a~~~lg~~~~~ 121 (292)
T COG0790 51 SAYPPDYAKALKSYEKAAELGDA---AALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL------AEALFNLGLMYAN 121 (292)
T ss_pred ccccccHHHHHHHHHHhhhcCCh---HHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc------HHHHHhHHHHHhc
Confidence 345678888888888776 223 5566677777654 568889999986654322 2678889999987
Q ss_pred ----hhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhh-hhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHH
Q psy8160 135 ----QRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCID-TLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGR 209 (324)
Q Consensus 135 ----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~ 209 (324)
..+..+|...|+++......+. ..+...+|.+|..-. ..+ ...+...|+..|.++.... ++.+.+.+|.
T Consensus 122 G~gv~~d~~~A~~~~~~Aa~~g~~~a---~~~~~~l~~~~~~g~~~~~-~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~ 195 (292)
T COG0790 122 GRGVPLDLVKALKYYEKAAKLGNVEA---ALAMYRLGLAYLSGLQALA-VAYDDKKALYLYRKAAELG--NPDAQLLLGR 195 (292)
T ss_pred CCCcccCHHHHHHHHHHHHHcCChhH---HHHHHHHHHHHHcChhhhc-ccHHHHhHHHHHHHHHHhc--CHHHHHHHHH
Confidence 4589999999999998762111 224888888886521 011 1224458999999997776 7788899998
Q ss_pred HHHH----cCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCC
Q psy8160 210 CFAA----VGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNS 250 (324)
Q Consensus 210 ~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 250 (324)
+|.. ..++.+|+.+|.++-+... ...++.++ ++...|.
T Consensus 196 ~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~ 237 (292)
T COG0790 196 MYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGE 237 (292)
T ss_pred HHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCC
Confidence 8865 3588999999999988876 88899999 6666553
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00052 Score=57.55 Aligned_cols=128 Identities=8% Similarity=-0.017 Sum_probs=101.7
Q ss_pred HHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHccCCCCHHHHHH
Q psy8160 162 ICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAA-VGKVHDAFLAYRNSVEKSEGNADTWCS 240 (324)
Q Consensus 162 ~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~ 240 (324)
+|..+.....+ .+..+.|...|.+|....+-...+|...|.+-.. .++.+.|...|+.+++..|.+++.|..
T Consensus 3 v~i~~m~~~~r-------~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~ 75 (280)
T PF05843_consen 3 VWIQYMRFMRR-------TEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLE 75 (280)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHH-------hCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 45555555544 3468899999999997666778999999999666 566667999999999999999999999
Q ss_pred hHHHHhhcCCCHHHHHHHH--------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhh
Q psy8160 241 IGNKDFSNNSNREDYHQAL--------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINN 299 (324)
Q Consensus 241 lg~~~~~~~~~~~~A~~~~--------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 299 (324)
....+...++ .+.|...| .+|......-.+.|+.+. ..+.++++.+..|++..+..
T Consensus 76 Y~~~l~~~~d-~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~--v~~v~~R~~~~~~~~~~~~~ 145 (280)
T PF05843_consen 76 YLDFLIKLND-INNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLES--VRKVEKRAEELFPEDNSLEL 145 (280)
T ss_dssp HHHHHHHTT--HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHH--HHHHHHHHHHHTTTS-HHHH
T ss_pred HHHHHHHhCc-HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHHhhhhhHHHH
Confidence 9999999999 99999888 478888888888899999 99999999999988665433
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG0376|consensus | Back alignment and domain information |
|---|
Probab=97.86 E-value=3.3e-05 Score=66.80 Aligned_cols=108 Identities=19% Similarity=0.137 Sum_probs=91.0
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHH
Q psy8160 128 IAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLL 207 (324)
Q Consensus 128 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 207 (324)
-+...+..+.++.|+..|.++|+++ |+.. ..+...+..+.. .+++..|+..+.++++.+|....+|+..
T Consensus 10 ean~~l~~~~fd~avdlysKaI~ld--pnca--~~~anRa~a~lK-------~e~~~~Al~Da~kaie~dP~~~K~Y~rr 78 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIELD--PNCA--IYFANRALAHLK-------VESFGGALHDALKAIELDPTYIKAYVRR 78 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcC--Ccce--eeechhhhhhee-------echhhhHHHHHHhhhhcCchhhheeeec
Confidence 3556677789999999999999999 8773 366666666655 4488889999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHh
Q psy8160 208 GRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDF 246 (324)
Q Consensus 208 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 246 (324)
|......+.+.+|+..|++.....|+++.+...+..|-.
T Consensus 79 g~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 79 GTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred cHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 999999999999999999999999999988877766643
|
|
| >KOG0376|consensus | Back alignment and domain information |
|---|
Probab=97.84 E-value=7.3e-06 Score=70.72 Aligned_cols=78 Identities=14% Similarity=0.084 Sum_probs=69.2
Q ss_pred hhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 181 HRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 181 ~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
+.++.|+..|.++++++|+++..+-+.+..+...+++..|+.-+.+|++.+|....+++..|..++..+. +.+|...|
T Consensus 18 ~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~-~~~A~~~l 95 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE-FKKALLDL 95 (476)
T ss_pred chHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH-HHHHHHHH
Confidence 3799999999999999999999999999999999999999999999999999998888888888888887 55554444
|
|
| >KOG0545|consensus | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00056 Score=54.24 Aligned_cols=109 Identities=12% Similarity=0.071 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhc------CCCCCchh--------hHHHHHHHHHHHhhhhhcccchhHHHHH
Q psy8160 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKE------DDLPVHLK--------ADICRQLGWMYHCIDTLGEKSHRETLAI 187 (324)
Q Consensus 122 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~~~~~~~A~ 187 (324)
..++.+-|.-++..|+|.+|...|+.++.. ...|...+ ...+.+.+.|+.. .+++-+++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~-------~~e~yevl 250 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLK-------KEEYYEVL 250 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhh-------HHHHHHHH
Confidence 357778899999999999999999988743 22244322 1245555566654 45899999
Q ss_pred HHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHH
Q psy8160 188 HCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADT 237 (324)
Q Consensus 188 ~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 237 (324)
+.....+..+|.+..+++..|.++...-+..+|...|.++++++|.-..+
T Consensus 251 eh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 251 EHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 99999999999999999999999999999999999999999999975443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0022 Score=56.26 Aligned_cols=175 Identities=15% Similarity=0.002 Sum_probs=117.4
Q ss_pred HHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCC--------c--------
Q psy8160 56 RLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPC--------T-------- 118 (324)
Q Consensus 56 ~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~--------~-------- 118 (324)
.+-.-..+..+...-++.-++|+ ++|+.+.++.+||.-.. ....+|++.|+++++..... .
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA--~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~ 250 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEEA--STIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAW 250 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccc--cCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhh
Confidence 34445567788999999999999 99999999888764211 22345555555554321110 0
Q ss_pred -----ccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHH
Q psy8160 119 -----FTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKS 193 (324)
Q Consensus 119 -----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a 193 (324)
.....+...+|.|....|+.++|++.|+..++.. |......+..++..++.. .+.+.++...+.+-
T Consensus 251 ~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~--p~~~~l~IrenLie~LLe-------lq~Yad~q~lL~kY 321 (539)
T PF04184_consen 251 HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF--PNLDNLNIRENLIEALLE-------LQAYADVQALLAKY 321 (539)
T ss_pred hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC--CccchhhHHHHHHHHHHh-------cCCHHHHHHHHHHh
Confidence 0113467789999999999999999999999887 543224477777777766 44788888887775
Q ss_pred hhh-CCccHHHHHHHHHHHHHc-CC---------------HHHHHHHHHHHHccCCCCHHHHHHh
Q psy8160 194 IEA-DPKSGQSLYLLGRCFAAV-GK---------------VHDAFLAYRNSVEKSEGNADTWCSI 241 (324)
Q Consensus 194 l~~-~~~~~~~~~~lg~~~~~~-~~---------------~~~A~~~~~~al~~~p~~~~~~~~l 241 (324)
-+. -|+++...|.-+..-.+. ++ -..|.+.+++|++.+|..|.....+
T Consensus 322 dDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~ 386 (539)
T PF04184_consen 322 DDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEM 386 (539)
T ss_pred ccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhcc
Confidence 333 256666655555443221 11 2347889999999999988776543
|
The molecular function of this protein is uncertain. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0033 Score=54.05 Aligned_cols=164 Identities=15% Similarity=0.100 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC--CCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHH-HhhhCC
Q psy8160 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKED--DLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQK-SIEADP 198 (324)
Q Consensus 122 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~-al~~~~ 198 (324)
+++..++-..|....+|+.-+...+..-... +.+.. ..+.+..|.++.+.+..| +.++|+..+.. .....+
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~--~~i~~~yafALnRrn~~g----dre~Al~il~~~l~~~~~ 214 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQ--HNIKFQYAFALNRRNKPG----DREKALQILLPVLESDEN 214 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcc--hHHHHHHHHHHhhcccCC----CHHHHHHHHHHHHhccCC
Confidence 4667777778999999998888887765442 12333 336666776675544455 89999999999 456677
Q ss_pred ccHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHH---------HH-
Q psy8160 199 KSGQSLYLLGRCFAAV---------GKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQ---------AL- 259 (324)
Q Consensus 199 ~~~~~~~~lg~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~---------~~- 259 (324)
.+++.+..+|.+|-.. ...++|+.+|.++.+.+|+. -.-.+++.++...|..++...+ .+
T Consensus 215 ~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~ll 293 (374)
T PF13281_consen 215 PDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRKIGVKLSSLL 293 (374)
T ss_pred CChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHH
Confidence 8899999999998754 34778999999999999754 2234555555555541222111 11
Q ss_pred ---------HHH---HhhHHHHHHcCCCCcchHHHHHHHhhhcCCCh
Q psy8160 260 ---------NKY---RDLGDFLVINNIPTSNNNRQCYNSYSTSIASC 294 (324)
Q Consensus 260 ---------~~~---~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (324)
.-| -.+..+..-.|++++ |++.+++++++.|..
T Consensus 294 g~kg~~~~~~dYWd~ATl~Ea~vL~~d~~k--a~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 294 GRKGSLEKMQDYWDVATLLEASVLAGDYEK--AIQAAEKAFKLKPPA 338 (374)
T ss_pred HhhccccccccHHHHHHHHHHHHHcCCHHH--HHHHHHHHhhcCCcc
Confidence 111 234445555789999 999999999998753
|
|
| >KOG4507|consensus | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0011 Score=58.97 Aligned_cols=96 Identities=14% Similarity=0.144 Sum_probs=80.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCCHH-HHHHhHHHHhhcCCCHHHHHHHH-----------HHHHhhHHHHHHcC
Q psy8160 206 LLGRCFAAVGKVHDAFLAYRNSVEKSEGNAD-TWCSIGNKDFSNNSNREDYHQAL-----------NKYRDLGDFLVINN 273 (324)
Q Consensus 206 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~lg~~~~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~ 273 (324)
.-|..+...|+...|++++..|+...|.... ...+|+.+....+. ..+|-..+ -.++.+|..|....
T Consensus 612 ~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~-~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~ 690 (886)
T KOG4507|consen 612 EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGL-HLDATKLLLQALAINSSEPLTFLSLGNAYLALK 690 (886)
T ss_pred cccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhh-hccHHHHHHHHHhhcccCchHHHhcchhHHHHh
Confidence 3466667789999999999999998886544 46788888888887 77776666 56788999999999
Q ss_pred CCCcchHHHHHHHhhhcCCChhhhhhchhhh
Q psy8160 274 IPTSNNNRQCYNSYSTSIASCKHINNNKDFS 304 (324)
Q Consensus 274 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 304 (324)
+.+. |++.|+.|++++|+++.+.+.|..+
T Consensus 691 ~i~~--a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 691 NISG--ALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred hhHH--HHHHHHHHHhcCCCChhhHHHHHHH
Confidence 9999 9999999999999999999887654
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=97.81 E-value=3.5e-05 Score=41.74 Aligned_cols=33 Identities=21% Similarity=0.506 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN 234 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 234 (324)
.+|+.+|.++..+|++++|+..|+++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 578999999999999999999999999999853
|
... |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0024 Score=57.60 Aligned_cols=152 Identities=11% Similarity=0.057 Sum_probs=107.2
Q ss_pred HhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcc--cchhHHHHHHHHHHHhhhCCccHHHHHHHHHHH
Q psy8160 134 VQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGE--KSHRETLAIHCLQKSIEADPKSGQSLYLLGRCF 211 (324)
Q Consensus 134 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~ 211 (324)
-.||-+.++..+.++.+..+.... -+ .+.-+++...-..-.+. .....+.|...+....+..|+..-.++..|+++
T Consensus 200 F~gdR~~GL~~L~~~~~~~~i~~~-la-~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~ 277 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKSENIRSP-LA-ALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLE 277 (468)
T ss_pred cCCcHHHHHHHHHHHhccCCcchH-HH-HHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 447889999999988764321111 00 11111111100011111 244788999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHccCCCC----HHHHHHhHHHHhhcCCCHHHHHHHH------------HHHHhhHHHHHHcCCC
Q psy8160 212 AAVGKVHDAFLAYRNSVEKSEGN----ADTWCSIGNKDFSNNSNREDYHQAL------------NKYRDLGDFLVINNIP 275 (324)
Q Consensus 212 ~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~~~~~~A~~~~------------~~~~~lg~~~~~~~~~ 275 (324)
...|+.++|+..|++++...+.- .-.++.+|.++..+.+ |++|..++ --.+..|.++...++.
T Consensus 278 ~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~-w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 278 RLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHD-WEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred HHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHch-HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence 99999999999999998543322 3456789999999999 99999999 2235668888888888
Q ss_pred -------CcchHHHHHHHhhhc
Q psy8160 276 -------TSNNNRQCYNSYSTS 290 (324)
Q Consensus 276 -------~~~~A~~~~~~al~~ 290 (324)
++ |.+.|.++-.+
T Consensus 357 ~~~~~~~~~--a~~l~~~vp~l 376 (468)
T PF10300_consen 357 EEAKEHKKE--AEELFRKVPKL 376 (468)
T ss_pred hhhhhhHHH--HHHHHHHHHHH
Confidence 66 77777766544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG0551|consensus | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0005 Score=56.86 Aligned_cols=99 Identities=18% Similarity=0.136 Sum_probs=80.2
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHH
Q psy8160 90 EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWM 169 (324)
Q Consensus 90 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~ 169 (324)
-|+-|....+|..|+..|.+.|....++....+.++.+.|-+....|+|..|+....+++..+ |.+.. ++++-+.+
T Consensus 87 eGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~--P~h~K--a~~R~Akc 162 (390)
T KOG0551|consen 87 EGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK--PTHLK--AYIRGAKC 162 (390)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC--cchhh--hhhhhhHH
Confidence 477777778888888888888888777776667788899999999999999999999999999 88855 88888888
Q ss_pred HHhhhhhcccchhHHHHHHHHHHHhhhCCc
Q psy8160 170 YHCIDTLGEKSHRETLAIHCLQKSIEADPK 199 (324)
Q Consensus 170 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 199 (324)
++. ..++.+|...++..+.++..
T Consensus 163 ~~e-------Le~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 163 LLE-------LERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHH-------HHHHHHHHHHHhhhhhhhHH
Confidence 877 34777788877777666543
|
|
| >KOG3616|consensus | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0097 Score=54.74 Aligned_cols=33 Identities=12% Similarity=-0.083 Sum_probs=29.1
Q ss_pred HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCCh
Q psy8160 260 NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASC 294 (324)
Q Consensus 260 ~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (324)
+++..++..+...|.+++ |-+.|-.+++++.-|
T Consensus 996 ~vhlk~a~~ledegk~ed--askhyveaiklntyn 1028 (1636)
T KOG3616|consen 996 EVHLKLAMFLEDEGKFED--ASKHYVEAIKLNTYN 1028 (1636)
T ss_pred cchhHHhhhhhhccchhh--hhHhhHHHhhccccc
Confidence 778888999999999999 999999999987644
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=97.67 E-value=3.3e-05 Score=41.82 Aligned_cols=33 Identities=9% Similarity=0.024 Sum_probs=29.8
Q ss_pred HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCCh
Q psy8160 260 NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASC 294 (324)
Q Consensus 260 ~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (324)
++|+.+|.+|...|++++ |+.+|+++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~--A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEE--ALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHH--HHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHH--HHHHHHHHHhhCCCC
Confidence 478999999999999999 999999999999953
|
... |
| >KOG0545|consensus | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00051 Score=54.46 Aligned_cols=102 Identities=18% Similarity=0.127 Sum_probs=86.4
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-c--------CCCCchhhH----------HHHHHHHhcccHHHHHHHHHHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-I--------DASPCTFTK----------LEGLMFKVNNEYDSALKHLTLC 110 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~--------~~~~~~~~~----------~la~~~~~~~~~~~A~~~~~~~ 110 (324)
+..+...-|+-++..|+|++|...|+.|+ . .|....+.. ..+.++...|+|-+++++...+
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei 256 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI 256 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 34567788999999999999999999987 3 355554433 3578888889999999999999
Q ss_pred HHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCc
Q psy8160 111 LIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVH 157 (324)
Q Consensus 111 l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 157 (324)
|...|.+. .++|..|..+....+..+|...|.++++.+ |.-
T Consensus 257 L~~~~~nv----KA~frRakAhaa~Wn~~eA~~D~~~vL~ld--psl 297 (329)
T KOG0545|consen 257 LRHHPGNV----KAYFRRAKAHAAVWNEAEAKADLQKVLELD--PSL 297 (329)
T ss_pred HhcCCchH----HHHHHHHHHHHhhcCHHHHHHHHHHHHhcC--hhh
Confidence 99988876 899999999999999999999999999998 653
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0017 Score=49.78 Aligned_cols=95 Identities=19% Similarity=0.092 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhh----HHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q psy8160 53 VHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFT----KLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHI 128 (324)
Q Consensus 53 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~----~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~l 128 (324)
+-..++..+...|++++|+..++.++..|.+.... ..+|.+...+|.+++|+..+...-. .. ..+...-..
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~----~~-w~~~~~elr 165 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE----ES-WAAIVAELR 165 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc----cc-HHHHHHHHh
Confidence 34567888899999999999999999666665544 3379999999999999996654432 11 122334456
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcC
Q psy8160 129 AHLHEVQRKYKTAKDSYEQLLKED 152 (324)
Q Consensus 129 a~~~~~~~~~~~A~~~~~~al~~~ 152 (324)
|.++...|+-++|+..|++++...
T Consensus 166 GDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 166 GDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred hhHHHHcCchHHHHHHHHHHHHcc
Confidence 999999999999999999999987
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0069 Score=52.64 Aligned_cols=152 Identities=13% Similarity=0.003 Sum_probs=99.9
Q ss_pred CCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc-CCCC----
Q psy8160 81 ASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKE-DDLP---- 155 (324)
Q Consensus 81 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~---- 155 (324)
......+...+.+....|.++.|...+.++....+......+.+.+..+.+....|+..+|+..++..+.. ...+
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence 34445566678999999999999999988877654433323467778899999999999999988888772 1001
Q ss_pred -------------------------CchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHH
Q psy8160 156 -------------------------VHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRC 210 (324)
Q Consensus 156 -------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~ 210 (324)
....+.++..+|....... .....+..++++..|..+++.+|....+|+.+|..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELY-SKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhc-cccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 0011334444444332210 00013577888888888888888888888888877
Q ss_pred HHHcCCH-----------------HHHHHHHHHHHccCCC
Q psy8160 211 FAAVGKV-----------------HDAFLAYRNSVEKSEG 233 (324)
Q Consensus 211 ~~~~~~~-----------------~~A~~~~~~al~~~p~ 233 (324)
+...-+. ..|+..|-+++...+.
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 302 NDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 6654111 2377777777777766
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG0985|consensus | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.061 Score=51.51 Aligned_cols=74 Identities=8% Similarity=0.012 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH-------------------HHH
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL-------------------NKY 262 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-------------------~~~ 262 (324)
+-+-.+-..|...|-+++-+..++.++.+..-+...+..+|.+|.+-. +++-.+++ ..|
T Consensus 1280 deLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk--p~km~EHl~LFwsRvNipKviRA~eqahlW 1357 (1666)
T KOG0985|consen 1280 DELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK--PEKMMEHLKLFWSRVNIPKVIRAAEQAHLW 1357 (1666)
T ss_pred HhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 445567778888999999999999999999989999999999887654 45554444 678
Q ss_pred HhhHHHHHHcCCCCc
Q psy8160 263 RDLGDFLVINNIPTS 277 (324)
Q Consensus 263 ~~lg~~~~~~~~~~~ 277 (324)
..+-.+|.+-..|+.
T Consensus 1358 ~ElvfLY~~y~eyDN 1372 (1666)
T KOG0985|consen 1358 SELVFLYDKYEEYDN 1372 (1666)
T ss_pred HHHHHHHHhhhhhhH
Confidence 888888888777777
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.019 Score=48.18 Aligned_cols=133 Identities=14% Similarity=0.024 Sum_probs=87.5
Q ss_pred hcccHHHHHHHHHHHHHhc----CCCcccHHHHHHHHHHHHHHhh-cHHHHHHHHHHHHhcCCC--------CC--chhh
Q psy8160 96 VNNEYDSALKHLTLCLIDA----SPCTFTKLEVRFHIAHLHEVQR-KYKTAKDSYEQLLKEDDL--------PV--HLKA 160 (324)
Q Consensus 96 ~~~~~~~A~~~~~~~l~~~----~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~~~--------~~--~~~~ 160 (324)
.+|+++.|..++.++-... |.....-.+.+++.|......+ +++.|+..++++.+.-.. |+ ....
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 3455555555555553222 2222234568889999999999 999999999998876211 11 1225
Q ss_pred HHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q psy8160 161 DICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSE 232 (324)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 232 (324)
.++..++.++...+. ....++|...++.+-...|+.+..+...=.+....++.+.+.+.+.+.+..-+
T Consensus 85 ~iL~~La~~~l~~~~----~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 85 SILRLLANAYLEWDT----YESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHcCCC----hHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 677788888865332 23677788888888777888777664433444447888888888888887544
|
It is also involved in sporulation []. |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.035 Score=46.89 Aligned_cols=183 Identities=19% Similarity=0.129 Sum_probs=130.2
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHH----hccHHHHHHHHHHHhcCCCCchhhHHHHHHHHh----cccHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKV----NNEYDSALKHLTLCLIDASPCTFTKLEGLMFKV----NNEYDS 102 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~----~~~~~~ 102 (324)
..|...+..+-... .....+.+|.+|.. ..+..+|..+|+.+. +.....+...+|.++.. ..+..+
T Consensus 58 ~~a~~~~~~a~~~~-----~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a-~~g~~~a~~~lg~~~~~G~gv~~d~~~ 131 (292)
T COG0790 58 AKALKSYEKAAELG-----DAAALALLGQMYGAGKGVSRDKTKAADWYRCAA-ADGLAEALFNLGLMYANGRGVPLDLVK 131 (292)
T ss_pred HHHHHHHHHhhhcC-----ChHHHHHHHHHHHhccCccccHHHHHHHHHHHh-hcccHHHHHhHHHHHhcCCCcccCHHH
Confidence 66777777665522 22578888888874 346888999999444 55555667778888876 459999
Q ss_pred HHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhh-------cHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhh
Q psy8160 103 ALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQR-------KYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDT 175 (324)
Q Consensus 103 A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~-------~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~ 175 (324)
|..+|+++........ ..+.+.+|.+|..-. +...|...|.++-... . ..+...+|.+|..-
T Consensus 132 A~~~~~~Aa~~g~~~a---~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~----~~a~~~lg~~y~~G-- 200 (292)
T COG0790 132 ALKYYEKAAKLGNVEA---ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--N----PDAQLLLGRMYEKG-- 200 (292)
T ss_pred HHHHHHHHHHcCChhH---HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--C----HHHHHHHHHHHHcC--
Confidence 9999999987644321 234778888877642 3347888898887765 2 44889999888652
Q ss_pred hcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHccCCCC
Q psy8160 176 LGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVG---------------KVHDAFLAYRNSVEKSEGN 234 (324)
Q Consensus 176 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~---------------~~~~A~~~~~~al~~~p~~ 234 (324)
.| ...+.++|..+|.++.+... ....+.++ ++...| +...|..++..+....+..
T Consensus 201 ~G-v~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 201 LG-VPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred CC-CCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
Confidence 22 13489999999999998876 88888899 666665 6666777776666555443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.022 Score=46.85 Aligned_cols=145 Identities=14% Similarity=0.146 Sum_probs=103.4
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHH-H
Q psy8160 88 KLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQ-L 166 (324)
Q Consensus 88 ~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~-l 166 (324)
...+.-....|++.+|...+..++...|... ++...++.|+...|+.+.|...+... |.......+.. .
T Consensus 138 ~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~----~~~~~la~~~l~~g~~e~A~~iL~~l------P~~~~~~~~~~l~ 207 (304)
T COG3118 138 LAEAKELIEAEDFGEAAPLLKQALQAAPENS----EAKLLLAECLLAAGDVEAAQAILAAL------PLQAQDKAAHGLQ 207 (304)
T ss_pred HHHhhhhhhccchhhHHHHHHHHHHhCcccc----hHHHHHHHHHHHcCChHHHHHHHHhC------cccchhhHHHHHH
Confidence 3345566778999999999999999888876 88999999999999999988887654 33222222222 1
Q ss_pred HHH--HHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC--CHHHHHHhH
Q psy8160 167 GWM--YHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEG--NADTWCSIG 242 (324)
Q Consensus 167 ~~~--~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg 242 (324)
+++ +.+....+ -+.-+++.+..+|++.++-+.+|..+...|+.+.|++.+-..+..+.. +..+...+-
T Consensus 208 a~i~ll~qaa~~~--------~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~ll 279 (304)
T COG3118 208 AQIELLEQAAATP--------EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLL 279 (304)
T ss_pred HHHHHHHHHhcCC--------CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHH
Confidence 211 21111111 123466677889999999999999999999999999999888877653 455666666
Q ss_pred HHHhhcCC
Q psy8160 243 NKDFSNNS 250 (324)
Q Consensus 243 ~~~~~~~~ 250 (324)
.++...|.
T Consensus 280 e~f~~~g~ 287 (304)
T COG3118 280 ELFEAFGP 287 (304)
T ss_pred HHHHhcCC
Confidence 66666664
|
|
| >KOG1550|consensus | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0029 Score=58.33 Aligned_cols=142 Identities=18% Similarity=0.109 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhh-----CCccHHHHHHHHHHHH
Q psy8160 138 YKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEA-----DPKSGQSLYLLGRCFA 212 (324)
Q Consensus 138 ~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~lg~~~~ 212 (324)
...|...++.+.... + ..+...+|.++..- ..| ...+.+.|+.+|+.+... ....+.+.+.+|.+|.
T Consensus 228 ~~~a~~~~~~~a~~g----~--~~a~~~~g~~y~~G-~~g-~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~ 299 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG----H--SEAQYALGICYLAG-TYG-VTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYL 299 (552)
T ss_pred hhHHHHHHHHHHhhc----c--hHHHHHHHHHHhhc-ccc-ccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHh
Confidence 567888888887655 2 44888899998662 122 245899999999999771 1125567889999999
Q ss_pred HcC-----CHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcC--CCHHHHHHHH---------HHHHhhHHHHHHcC---
Q psy8160 213 AVG-----KVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNN--SNREDYHQAL---------NKYRDLGDFLVINN--- 273 (324)
Q Consensus 213 ~~~-----~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~--~~~~~A~~~~---------~~~~~lg~~~~~~~--- 273 (324)
... +...|+.+|.++-... ++++.+.+|.++.... +++..|.++| .+.+.++.+|....
T Consensus 300 ~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 300 QGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVE 377 (552)
T ss_pred cCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcC
Confidence 853 6788999999997655 6888899999998776 2278999999 88899999987663
Q ss_pred -CCCcchHHHHHHHhhhcC
Q psy8160 274 -IPTSNNNRQCYNSYSTSI 291 (324)
Q Consensus 274 -~~~~~~A~~~~~~al~~~ 291 (324)
+... |..+|.++.+..
T Consensus 378 r~~~~--A~~~~k~aA~~g 394 (552)
T KOG1550|consen 378 RNLEL--AFAYYKKAAEKG 394 (552)
T ss_pred CCHHH--HHHHHHHHHHcc
Confidence 5566 999999999887
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0023 Score=51.11 Aligned_cols=101 Identities=19% Similarity=0.299 Sum_probs=70.9
Q ss_pred HhhcHHHHHHHHHHHHhc---CCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCc------cHHHH
Q psy8160 134 VQRKYKTAKDSYEQLLKE---DDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPK------SGQSL 204 (324)
Q Consensus 134 ~~~~~~~A~~~~~~al~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~ 204 (324)
....+++|++.|.-|+-. ...+....+.++..+||+|...........-...|...|.++++.... .....
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 344677788777776632 111333458899999999976432221233467888888888865432 23678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q psy8160 205 YLLGRCFAAVGKVHDAFLAYRNSVEKSEGN 234 (324)
Q Consensus 205 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 234 (324)
+.+|.+....|++++|..+|.+++.....+
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 899999999999999999999999765443
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00023 Score=38.01 Aligned_cols=33 Identities=21% Similarity=0.551 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN 234 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 234 (324)
++++.+|.++...|++++|+..|++++...|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 478999999999999999999999999999974
|
|
| >KOG0530|consensus | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0071 Score=48.67 Aligned_cols=146 Identities=8% Similarity=0.103 Sum_probs=95.5
Q ss_pred hccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHh-hcHHHH
Q psy8160 64 NNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQ-RKYKTA 141 (324)
Q Consensus 64 ~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A 141 (324)
..+|.++..+|+.++ .+.. -..|+...+.++..+|.+- .+|...-.++..+ .+..+-
T Consensus 39 te~fr~~m~YfRAI~~~~E~-----------------S~RAl~LT~d~i~lNpAnY----TVW~yRr~iL~~l~~dL~~E 97 (318)
T KOG0530|consen 39 TEDFRDVMDYFRAIIAKNEK-----------------SPRALQLTEDAIRLNPANY----TVWQYRRVILRHLMSDLNKE 97 (318)
T ss_pred chhHHHHHHHHHHHHhcccc-----------------CHHHHHHHHHHHHhCcccc----hHHHHHHHHHHHhHHHHHHH
Confidence 356777777777555 3333 3345555556676777665 4444444444333 356666
Q ss_pred HHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHH-HHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHH
Q psy8160 142 KDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRET-LAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDA 220 (324)
Q Consensus 142 ~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A 220 (324)
++++..++..+ |.+.+ +|...-.+.-. .| ++. .-+++.+.++..+.++..+|...-.+...-+.++.=
T Consensus 98 l~~l~eI~e~n--pKNYQ--vWHHRr~ive~---l~----d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~E 166 (318)
T KOG0530|consen 98 LEYLDEIIEDN--PKNYQ--VWHHRRVIVEL---LG----DPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDE 166 (318)
T ss_pred HHHHHHHHHhC--ccchh--HHHHHHHHHHH---hc----CcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHH
Confidence 77777877777 77755 77666665533 22 444 567777888888888888888888887777778888
Q ss_pred HHHHHHHHccCCCCHHHHHHh
Q psy8160 221 FLAYRNSVEKSEGNADTWCSI 241 (324)
Q Consensus 221 ~~~~~~al~~~p~~~~~~~~l 241 (324)
+.+..+.++.+-.+-.+|...
T Consensus 167 L~y~~~Lle~Di~NNSAWN~R 187 (318)
T KOG0530|consen 167 LAYADELLEEDIRNNSAWNQR 187 (318)
T ss_pred HHHHHHHHHHhhhccchhhee
Confidence 888888887777666666543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0021 Score=48.20 Aligned_cols=57 Identities=9% Similarity=0.126 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
.+...++..+...|++++|+..+++++..+|.+..+|..+-.+|...|+ ...|+..|
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~-~~~A~~~Y 119 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGR-RAEALRVY 119 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT--HHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcC-HHHHHHHH
Confidence 4556678888999999999999999999999999999999999999999 99999887
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.01 Score=44.35 Aligned_cols=50 Identities=26% Similarity=0.352 Sum_probs=44.1
Q ss_pred chhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q psy8160 180 SHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVE 229 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 229 (324)
.+++++|+..+++++..+|.+..+|..+-.++...|+...|+..|++...
T Consensus 75 ~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 75 AGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp TT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 55999999999999999999999999999999999999999999988854
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.071 Score=45.65 Aligned_cols=249 Identities=9% Similarity=-0.016 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHH--HhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Q psy8160 53 VHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMF--KVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAH 130 (324)
Q Consensus 53 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~--~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~ 130 (324)
+|.--+..-...|+++.|.+-|+..+.||..-.. .+.|... ...|+.+.|..+-+++-...|.-. -+....-.
T Consensus 122 IhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRll-GLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~----WA~~AtLe 196 (531)
T COG3898 122 IHLLEAQAALLEGDYEDARKKFEAMLDDPETRLL-GLRGLYLEAQRLGAREAARHYAERAAEKAPQLP----WAARATLE 196 (531)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHH-hHHHHHHHHHhcccHHHHHHHHHHHHhhccCCc----hHHHHHHH
Confidence 5566667777889999999999977777754322 2233333 345899999999999987777655 23333334
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHH--hhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHH
Q psy8160 131 LHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYH--CIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLG 208 (324)
Q Consensus 131 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg 208 (324)
.....|+++.|+...+..........+ .+-...+-++. .++.. ..+...|...-.++.++.|+...+-.--+
T Consensus 197 ~r~~~gdWd~AlkLvd~~~~~~vie~~---~aeR~rAvLLtAkA~s~l---dadp~~Ar~~A~~a~KL~pdlvPaav~AA 270 (531)
T COG3898 197 ARCAAGDWDGALKLVDAQRAAKVIEKD---VAERSRAVLLTAKAMSLL---DADPASARDDALEANKLAPDLVPAAVVAA 270 (531)
T ss_pred HHHhcCChHHHHHHHHHHHHHHhhchh---hHHHHHHHHHHHHHHHHh---cCChHHHHHHHHHHhhcCCccchHHHHHH
Confidence 456789999999998776543311211 12222222221 11111 12678899999999999999988888889
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHH-------HHHH-----HHHHhhHHHHHHcCCCC
Q psy8160 209 RCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDY-------HQAL-----NKYRDLGDFLVINNIPT 276 (324)
Q Consensus 209 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A-------~~~~-----~~~~~lg~~~~~~~~~~ 276 (324)
..++..|+..++-..++.+.+.+| +|+.|... ++.+.|+ .... +..+ +..+..+..-...|++.
T Consensus 271 ralf~d~~~rKg~~ilE~aWK~eP-HP~ia~lY--~~ar~gd-ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~ 346 (531)
T COG3898 271 RALFRDGNLRKGSKILETAWKAEP-HPDIALLY--VRARSGD-TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFS 346 (531)
T ss_pred HHHHhccchhhhhhHHHHHHhcCC-ChHHHHHH--HHhcCCC-cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchH
Confidence 999999999999999999999988 56654332 2334444 2111 1111 55556666666677777
Q ss_pred cchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHH
Q psy8160 277 SNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKY 319 (324)
Q Consensus 277 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~ 319 (324)
. |..--+.+....|.... .--+..+..-+.||-.++..+.
T Consensus 347 ~--ARa~Aeaa~r~~pres~-~lLlAdIeeAetGDqg~vR~wl 386 (531)
T COG3898 347 A--ARAKAEAAAREAPRESA-YLLLADIEEAETGDQGKVRQWL 386 (531)
T ss_pred H--HHHHHHHHhhhCchhhH-HHHHHHHHhhccCchHHHHHHH
Confidence 7 77777777777775432 2223333334445555554443
|
|
| >KOG3616|consensus | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.057 Score=49.98 Aligned_cols=59 Identities=17% Similarity=0.261 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHH------h-c----CCCCc-hhhHHHHHHHHhcccHHHHHHHHHHH
Q psy8160 52 EVHLRLGLMFKVNNEYDSALKHLTLC------L-I----DASPC-TFTKLEGLMFKVNNEYDSALKHLTLC 110 (324)
Q Consensus 52 ~~~~~lg~~~~~~~~~~~A~~~~~~a------l-~----~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~~ 110 (324)
+.|-.-|.+|-+..++++|+++|++- + + -|... ..-...|.-+...|+++.|+.+|-.+
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea 732 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEA 732 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHh
Confidence 45666777888888888888888752 1 1 11111 11111366667777777777777654
|
|
| >KOG0530|consensus | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0074 Score=48.57 Aligned_cols=172 Identities=10% Similarity=0.114 Sum_probs=121.2
Q ss_pred HhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhc-ccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHH-
Q psy8160 63 VNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVN-NEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYK- 139 (324)
Q Consensus 63 ~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~- 139 (324)
....-..|+.....+| .+|.+...+...-.++... .+..+-++++..++..+|.+- .+|...-.+....|++.
T Consensus 55 ~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNY----QvWHHRr~ive~l~d~s~ 130 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNY----QVWHHRRVIVELLGDPSF 130 (318)
T ss_pred ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccch----hHHHHHHHHHHHhcCccc
Confidence 3344567888888888 8888888776665555544 457777888888888888776 67777777777778777
Q ss_pred HHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHc-C---
Q psy8160 140 TAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAV-G--- 215 (324)
Q Consensus 140 ~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~-~--- 215 (324)
.-++..+.++..+ ..+.+ +|...-|+... .+.++.-+.+..+.++.+-.+..+|...=.+.... |
T Consensus 131 rELef~~~~l~~D--aKNYH--aWshRqW~~r~-------F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~ 199 (318)
T KOG0530|consen 131 RELEFTKLMLDDD--AKNYH--AWSHRQWVLRF-------FKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVIS 199 (318)
T ss_pred chHHHHHHHHhcc--ccchh--hhHHHHHHHHH-------HhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCcc
Confidence 6677788888877 66666 88888888866 33788888888888888877777776532222111 1
Q ss_pred --CHHHHHHHHHHHHccCCCCHHHHHHhHHHHhh-cC
Q psy8160 216 --KVHDAFLAYRNSVEKSEGNADTWCSIGNKDFS-NN 249 (324)
Q Consensus 216 --~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~~ 249 (324)
..+.=+.+..+.+...|++..+|..|.-++.. .|
T Consensus 200 ~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~g 236 (318)
T KOG0530|consen 200 KAELERELNYTKDKILLVPNNESAWNYLKGLLELDSG 236 (318)
T ss_pred HHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccC
Confidence 12334566677788888888888888777765 44
|
|
| >KOG2300|consensus | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.04 Score=48.40 Aligned_cols=187 Identities=14% Similarity=0.113 Sum_probs=122.7
Q ss_pred HHHHHHHHhccHHHHHHHHHHHh-c---CCCC-------chhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHH
Q psy8160 56 RLGLMFKVNNEYDSALKHLTLCL-I---DASP-------CTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEV 124 (324)
Q Consensus 56 ~lg~~~~~~~~~~~A~~~~~~al-~---~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~ 124 (324)
.+..|-.-.|++.+|++-...+. . .|.. +....++|......+.++.|+.+|..+.+....... .+.+
T Consensus 328 ~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl-~a~~ 406 (629)
T KOG2300|consen 328 HIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDL-QAFC 406 (629)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHH-HHHH
Confidence 34566677899999999887766 2 3442 334556788888889999999999999876544332 3456
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCc---hhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc-
Q psy8160 125 RFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVH---LKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS- 200 (324)
Q Consensus 125 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~- 200 (324)
..++|..|...++-+.--+..+.+-..+..+-+ .++.+++..|...+. .+++.+|..++.+.++.....
T Consensus 407 nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~-------qn~lnEaK~~l~e~Lkmanaed 479 (629)
T KOG2300|consen 407 NLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFK-------QNDLNEAKRFLRETLKMANAED 479 (629)
T ss_pred HHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHH-------hccHHHHHHHHHHHHhhcchhh
Confidence 677899999988765443333332222211111 113344444544444 558999999999998765211
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC---CHH-HHH--HhHHHHhhcCC
Q psy8160 201 -----GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEG---NAD-TWC--SIGNKDFSNNS 250 (324)
Q Consensus 201 -----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~-~~~--~lg~~~~~~~~ 250 (324)
+-.+..||.+....|+..++....+-+++.... .+. .|. .+-.++...|.
T Consensus 480 ~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~ 540 (629)
T KOG2300|consen 480 LNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGE 540 (629)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCc
Confidence 235677899999999999999998888876544 332 232 34566777665
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0068 Score=48.40 Aligned_cols=99 Identities=14% Similarity=0.224 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhccC----CCcccchHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVD----PSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKH 106 (324)
Q Consensus 31 ~~A~~~~~~~l~~~----p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~ 106 (324)
++|++.|..++-.. +....-+.++..+|.+|...|+-+.....++ .|++.
T Consensus 94 ~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~--------------------------~Al~~ 147 (214)
T PF09986_consen 94 EEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLR--------------------------KALEF 147 (214)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHH--------------------------HHHHH
Confidence 67777777766432 1222345577888888888888666666666 56677
Q ss_pred HHHHHHhcCC--CcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCC
Q psy8160 107 LTLCLIDASP--CTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLP 155 (324)
Q Consensus 107 ~~~~l~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 155 (324)
|++++..... .......+.+.+|.++...|++++|+..|.+++.....+
T Consensus 148 y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 148 YEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 7777765333 344556788899999999999999999999999876333
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.15 Score=48.22 Aligned_cols=258 Identities=12% Similarity=0.017 Sum_probs=149.7
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhh-HHHHHHHHhcccHHHHHHHHHHHHHhcCCCcc-cHHHHHHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFT-KLEGLMFKVNNEYDSALKHLTLCLIDASPCTF-TKLEVRFH 127 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~-~~~~~~~~ 127 (324)
..+.|..-+..+...|...+|+++--.| .||...... ...+.-....++..- ....+..-|.... ..+.....
T Consensus 346 ~~~lH~~Aa~w~~~~g~~~eAI~hAlaA-~d~~~aa~lle~~~~~L~~~~~lsl----l~~~~~~lP~~~l~~~P~Lvll 420 (894)
T COG2909 346 LKELHRAAAEWFAEHGLPSEAIDHALAA-GDPEMAADLLEQLEWQLFNGSELSL----LLAWLKALPAELLASTPRLVLL 420 (894)
T ss_pred hhHHHHHHHHHHHhCCChHHHHHHHHhC-CCHHHHHHHHHhhhhhhhcccchHH----HHHHHHhCCHHHHhhCchHHHH
Confidence 4567888888888999999998876533 222211100 001111122222221 1222333333322 22345566
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHhcCCCCCchh-----hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH-
Q psy8160 128 IAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK-----ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG- 201 (324)
Q Consensus 128 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~- 201 (324)
.++......++.+|..+..++-..-+.|+... ++..--.|.+... .++.+.|++..+.++..-|.+.
T Consensus 421 ~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~-------~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 421 QAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALN-------RGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred HHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHh-------cCCHHHHHHHHHHHHHhcccccc
Confidence 68888889999999998888765443232211 2222222222222 4589999999999998877654
Q ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHccC----CCCHHHHH--HhHHHHhhcCCCHHHH--HHHH----------
Q psy8160 202 ----QSLYLLGRCFAAVGKVHDAFLAYRNSVEKS----EGNADTWC--SIGNKDFSNNSNREDY--HQAL---------- 259 (324)
Q Consensus 202 ----~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~--~lg~~~~~~~~~~~~A--~~~~---------- 259 (324)
.++..+|.+..-.|++++|..+...+.++. .-+-..|. ..+.++...|+ ...| ...|
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq-~~~a~~~~~~~~~~~q~l~q 572 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQ-VARAEQEKAFNLIREQHLEQ 572 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHhhh
Confidence 567788999999999999999999988773 33334443 34666777774 3333 3333
Q ss_pred ----------------------------------------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCC
Q psy8160 260 ----------------------------------------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIAS 293 (324)
Q Consensus 260 ----------------------------------------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~ 293 (324)
-+...|+.++...|++++ |.........+--+
T Consensus 573 ~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~--A~~~l~~~~~l~~~ 650 (894)
T COG2909 573 KPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDK--ALAQLDELERLLLN 650 (894)
T ss_pred cccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHH--HHHHHHHHHHHhcC
Confidence 223467778888888888 88777766554322
Q ss_pred h-hhh--hhchhhh---ccCChhhHHHHHHHHhhc
Q psy8160 294 C-KHI--NNNKDFS---NNSNREDYHQALNKYRDL 322 (324)
Q Consensus 294 ~-~~~--~~~l~~~---~~~~~~~~~~a~~~~~~~ 322 (324)
. +++ ..+...+ .-..+|+...+-.+..+.
T Consensus 651 ~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 651 GQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred CCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 2 222 1111111 115567777776665543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00046 Score=37.81 Aligned_cols=28 Identities=25% Similarity=0.391 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q psy8160 203 SLYLLGRCFAAVGKVHDAFLAYRNSVEK 230 (324)
Q Consensus 203 ~~~~lg~~~~~~~~~~~A~~~~~~al~~ 230 (324)
+|..||.+|...|++++|+.+|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4788999999999999999999996644
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.028 Score=48.19 Aligned_cols=142 Identities=13% Similarity=0.099 Sum_probs=101.4
Q ss_pred HHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhh-----cccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHH
Q psy8160 144 SYEQLLKEDDLPVHLKADICRQLGWMYHCIDTL-----GEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVH 218 (324)
Q Consensus 144 ~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~ 218 (324)
-|++.+..+ |.++. +|..+...--..... .....-.+.-+..|++|++.+|.+...+..+=.+.....+.+
T Consensus 7 el~~~v~~~--P~di~--~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~ 82 (321)
T PF08424_consen 7 ELNRRVREN--PHDIE--AWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSE 82 (321)
T ss_pred HHHHHHHhC--cccHH--HHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHH
Confidence 355666666 77644 666665444322111 111224567789999999999999998888878888888999
Q ss_pred HHHHHHHHHHccCCCCHHHHHHhHHHHhh---cCCCHHHHHHHH-----------------------------HHHHhhH
Q psy8160 219 DAFLAYRNSVEKSEGNADTWCSIGNKDFS---NNSNREDYHQAL-----------------------------NKYRDLG 266 (324)
Q Consensus 219 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~---~~~~~~~A~~~~-----------------------------~~~~~lg 266 (324)
+...-+++++..+|+++..|...-..... .-. +.+....| .++..+.
T Consensus 83 ~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~-v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~ 161 (321)
T PF08424_consen 83 KLAKKWEELLFKNPGSPELWREYLDFRQSNFASFT-VSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLC 161 (321)
T ss_pred HHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHH
Confidence 99999999999999999999765443332 112 33333333 5667788
Q ss_pred HHHHHcCCCCcchHHHHHHHhhhcCC
Q psy8160 267 DFLVINNIPTSNNNRQCYNSYSTSIA 292 (324)
Q Consensus 267 ~~~~~~~~~~~~~A~~~~~~al~~~p 292 (324)
....+.|..+. |+..++..++++=
T Consensus 162 ~fl~~aG~~E~--Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 162 RFLRQAGYTER--AVALWQALLEFNF 185 (321)
T ss_pred HHHHHCCchHH--HHHHHHHHHHHHc
Confidence 88899999999 9999999999753
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00091 Score=35.62 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCC
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPV 156 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 156 (324)
++++.+|.++...|++++|+..|++++... |+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~--P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRY--PD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHS--TT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHC--cC
Confidence 367888999999999999999999988887 65
|
|
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.19 Score=46.44 Aligned_cols=27 Identities=15% Similarity=0.101 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHH
Q psy8160 51 NEVHLRLGLMFKVNNEYDSALKHLTLC 77 (324)
Q Consensus 51 ~~~~~~lg~~~~~~~~~~~A~~~~~~a 77 (324)
++.|.-++......-+++.|...|-+.
T Consensus 692 prLWrllAe~Al~Kl~l~tAE~AFVrc 718 (1189)
T KOG2041|consen 692 PRLWRLLAEYALFKLALDTAEHAFVRC 718 (1189)
T ss_pred hHHHHHHHHHHHHHHhhhhHhhhhhhh
Confidence 446677777666666666666666543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00031 Score=38.49 Aligned_cols=29 Identities=10% Similarity=0.054 Sum_probs=23.9
Q ss_pred HHHhhHHHHHHcCCCCcchHHHHHHHhhhcC
Q psy8160 261 KYRDLGDFLVINNIPTSNNNRQCYNSYSTSI 291 (324)
Q Consensus 261 ~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~ 291 (324)
+|.+||.+|...|++++ |+++|++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~--Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEK--AIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHH--HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHH--HHHHHHHHHHhc
Confidence 47889999999999999 999999966443
|
|
| >KOG1914|consensus | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.19 Score=44.93 Aligned_cols=206 Identities=8% Similarity=0.012 Sum_probs=127.9
Q ss_pred HHHHHHHHhccCCCcccchHHHHHHHHHHHHhcc--------------HHHHHHHHHHHh--cCCCCchhhHHHHHHHHh
Q psy8160 33 AIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNE--------------YDSALKHLTLCL--IDASPCTFTKLEGLMFKV 96 (324)
Q Consensus 33 A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~--------------~~~A~~~~~~al--~~~~~~~~~~~la~~~~~ 96 (324)
-.-+|++++..-+- .+++|+.-+..+...++ -+++.+++++++ ....+...+..++..-..
T Consensus 264 v~yayeQ~ll~l~~---~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~ 340 (656)
T KOG1914|consen 264 VMYAYEQCLLYLGY---HPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEES 340 (656)
T ss_pred HHHHHHHHHHHHhc---CHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 34456666655543 34566665555555444 567888888887 444544445545444443
Q ss_pred ccc---HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhh
Q psy8160 97 NNE---YDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCI 173 (324)
Q Consensus 97 ~~~---~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~ 173 (324)
.-+ ++..-.++++++........ -++.++-..-.+..-.+.|...|.++-+....+.+ ++..-|.+-+.
T Consensus 341 ~~~~n~~~~~~~~~~~ll~~~~~~~t---Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hh----VfVa~A~mEy~- 412 (656)
T KOG1914|consen 341 RYDDNKEKKVHEIYNKLLKIEDIDLT---LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHH----VFVAAALMEYY- 412 (656)
T ss_pred hcccchhhhhHHHHHHHHhhhccCCc---eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcch----hhHHHHHHHHH-
Confidence 333 66677777777654332221 23444444445555577888888888766543422 33333333322
Q ss_pred hhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc--CCC-CHHHHHHhHHHHhhcCC
Q psy8160 174 DTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEK--SEG-NADTWCSIGNKDFSNNS 250 (324)
Q Consensus 174 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~-~~~~~~~lg~~~~~~~~ 250 (324)
. .++.+-|...|+-.+...++++..-.....-+...++-..|...|++++.. .|+ ..+.|-.+-..-...|+
T Consensus 413 -c----skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGd 487 (656)
T KOG1914|consen 413 -C----SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGD 487 (656)
T ss_pred -h----cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhccc
Confidence 1 348888999999999999999987777777788889989999999999886 333 24566665555555555
Q ss_pred CHHHH
Q psy8160 251 NREDY 255 (324)
Q Consensus 251 ~~~~A 255 (324)
...+
T Consensus 488 -L~si 491 (656)
T KOG1914|consen 488 -LNSI 491 (656)
T ss_pred -HHHH
Confidence 4443
|
|
| >KOG1308|consensus | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00024 Score=58.98 Aligned_cols=91 Identities=14% Similarity=0.125 Sum_probs=65.8
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHH
Q psy8160 131 LHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRC 210 (324)
Q Consensus 131 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~ 210 (324)
-....|.+++|++.|..++.++ |.. +..+-..+.++.. .+....|+..+..+++++|+....+-..|..
T Consensus 123 eAln~G~~~~ai~~~t~ai~ln--p~~--a~l~~kr~sv~lk-------l~kp~~airD~d~A~ein~Dsa~~ykfrg~A 191 (377)
T KOG1308|consen 123 EALNDGEFDTAIELFTSAIELN--PPL--AILYAKRASVFLK-------LKKPNAAIRDCDFAIEINPDSAKGYKFRGYA 191 (377)
T ss_pred HHhcCcchhhhhcccccccccC--Cch--hhhcccccceeee-------ccCCchhhhhhhhhhccCcccccccchhhHH
Confidence 3445677778888888887777 665 4466666666655 3367777778888888887777777777777
Q ss_pred HHHcCCHHHHHHHHHHHHccCC
Q psy8160 211 FAAVGKVHDAFLAYRNSVEKSE 232 (324)
Q Consensus 211 ~~~~~~~~~A~~~~~~al~~~p 232 (324)
...+|++.+|...++.+.+++-
T Consensus 192 ~rllg~~e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 192 ERLLGNWEEAAHDLALACKLDY 213 (377)
T ss_pred HHHhhchHHHHHHHHHHHhccc
Confidence 7777888888888877777654
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0013 Score=34.35 Aligned_cols=33 Identities=27% Similarity=0.550 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN 234 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 234 (324)
.+++.+|.++...+++++|+.+++++++.+|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 568899999999999999999999999998863
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.098 Score=39.63 Aligned_cols=143 Identities=10% Similarity=0.041 Sum_probs=97.7
Q ss_pred HHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhh
Q psy8160 94 FKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCI 173 (324)
Q Consensus 94 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~ 173 (324)
+...++.++|+..|..+-+..-.. ...-+.++.|.+....|+...|+..|..+-...+.|.-..-.+-..-++++.-
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~--YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD- 144 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGS--YPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVD- 144 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCc--chHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhc-
Confidence 344577888888887665443333 23456778899999999999999999998877755543322233333444422
Q ss_pred hhhcccchhHHHHHHHHHHHh-hhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHh
Q psy8160 174 DTLGEKSHRETLAIHCLQKSI-EADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDF 246 (324)
Q Consensus 174 ~~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 246 (324)
.+.|++-....+..- ..+|....+.-.||..-++.|++.+|.++|..... +...|....+.+.+.+
T Consensus 145 ------~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ml 211 (221)
T COG4649 145 ------NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIML 211 (221)
T ss_pred ------cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHH
Confidence 446666655555432 34455567788899999999999999999998866 6666766666665544
|
|
| >KOG0985|consensus | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.21 Score=48.10 Aligned_cols=141 Identities=13% Similarity=0.031 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHH
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQ 202 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 202 (324)
.+|.++|......|...+|++.|-++ .+ |. .+...-.+..+ .+.|++-+.++.-+-+.-. .+.
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika--dD--ps-----~y~eVi~~a~~-------~~~~edLv~yL~MaRkk~~-E~~ 1167 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA--DD--PS-----NYLEVIDVASR-------TGKYEDLVKYLLMARKKVR-EPY 1167 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc--CC--cH-----HHHHHHHHHHh-------cCcHHHHHHHHHHHHHhhc-Ccc
Confidence 57777777777777777777777554 12 32 23333333322 3467777777776654321 222
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH---HHHHhhHHHHHHcCCCCcch
Q psy8160 203 SLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL---NKYRDLGDFLVINNIPTSNN 279 (324)
Q Consensus 203 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~---~~~~~lg~~~~~~~~~~~~~ 279 (324)
+-..|-..|.+.++..+-.... ..|+++.. -..|+-++..+. |+.|.-.| .-|..|+..+...|+|+.
T Consensus 1168 id~eLi~AyAkt~rl~elE~fi-----~gpN~A~i-~~vGdrcf~~~~-y~aAkl~y~~vSN~a~La~TLV~LgeyQ~-- 1238 (1666)
T KOG0985|consen 1168 IDSELIFAYAKTNRLTELEEFI-----AGPNVANI-QQVGDRCFEEKM-YEAAKLLYSNVSNFAKLASTLVYLGEYQG-- 1238 (1666)
T ss_pred chHHHHHHHHHhchHHHHHHHh-----cCCCchhH-HHHhHHHhhhhh-hHHHHHHHHHhhhHHHHHHHHHHHHHHHH--
Confidence 2223334455555555433322 45655443 567888888899 99998888 678889999999999999
Q ss_pred HHHHHHHhhh
Q psy8160 280 NRQCYNSYST 289 (324)
Q Consensus 280 A~~~~~~al~ 289 (324)
|++.-++|-.
T Consensus 1239 AVD~aRKAns 1248 (1666)
T KOG0985|consen 1239 AVDAARKANS 1248 (1666)
T ss_pred HHHHhhhccc
Confidence 9999888753
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.2 Score=42.99 Aligned_cols=247 Identities=11% Similarity=-0.007 Sum_probs=161.8
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHh-cCCCC--chhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Q psy8160 55 LRLGLMFKVNNEYDSALKHLTLCL-IDASP--CTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHL 131 (324)
Q Consensus 55 ~~lg~~~~~~~~~~~A~~~~~~al-~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~ 131 (324)
..-|.+..--||-..|.+.-.++- +-.++ .-.+.+-++.-...|+++.|.+-|+-.+.. |.... --+..|-..
T Consensus 88 LStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRl---lGLRgLyle 163 (531)
T COG3898 88 LSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRL---LGLRGLYLE 163 (531)
T ss_pred HhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHH---HhHHHHHHH
Confidence 344667777788888888887765 32222 233444577888889999999999977743 33210 112222222
Q ss_pred HHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhC---CccH---HHHH
Q psy8160 132 HEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEAD---PKSG---QSLY 205 (324)
Q Consensus 132 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---~~~~---~~~~ 205 (324)
-...|+.+.|+.+-+.+.... |.- .|-..+.+-.. .. .|+++.|++..+...+.. ++.. .+-.
T Consensus 164 Aqr~GareaAr~yAe~Aa~~A--p~l----~WA~~AtLe~r-~~----~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvL 232 (531)
T COG3898 164 AQRLGAREAARHYAERAAEKA--PQL----PWAARATLEAR-CA----AGDWDGALKLVDAQRAAKVIEKDVAERSRAVL 232 (531)
T ss_pred HHhcccHHHHHHHHHHHHhhc--cCC----chHHHHHHHHH-Hh----cCChHHHHHHHHHHHHHHhhchhhHHHHHHHH
Confidence 346699999999999998887 654 22223322211 11 459999999998875432 2222 2222
Q ss_pred HHHHHH-HHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH-HHH-----HhhHHHHHHcCCCCcc
Q psy8160 206 LLGRCF-AAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL-NKY-----RDLGDFLVINNIPTSN 278 (324)
Q Consensus 206 ~lg~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-~~~-----~~lg~~~~~~~~~~~~ 278 (324)
.-+... .-.-+...|...-.+++++.|+....-..-+..++..|+ ..++-..+ .+| -.++.+|....--+.
T Consensus 233 LtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~-~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdt- 310 (531)
T COG3898 233 LTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGN-LRKGSKILETAWKAEPHPDIALLYVRARSGDT- 310 (531)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccc-hhhhhhHHHHHHhcCCChHHHHHHHHhcCCCc-
Confidence 222221 223468889999999999999999999999999999999 99998888 333 568888888877778
Q ss_pred hHHHHHHHhh---hcCCChhhhhhchhhhccCChhhHHHHHHHHh
Q psy8160 279 NNRQCYNSYS---TSIASCKHINNNKDFSNNSNREDYHQALNKYR 320 (324)
Q Consensus 279 ~A~~~~~~al---~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~ 320 (324)
+++-.+++- .+.|+|........... ...++|-.|..+..
T Consensus 311 -a~dRlkRa~~L~slk~nnaes~~~va~aA-lda~e~~~ARa~Ae 353 (531)
T COG3898 311 -ALDRLKRAKKLESLKPNNAESSLAVAEAA-LDAGEFSAARAKAE 353 (531)
T ss_pred -HHHHHHHHHHHHhcCccchHHHHHHHHHH-HhccchHHHHHHHH
Confidence 887777665 45677665444333332 34566766665543
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.14 Score=42.28 Aligned_cols=147 Identities=18% Similarity=0.112 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHH-
Q psy8160 52 EVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIA- 129 (324)
Q Consensus 52 ~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la- 129 (324)
+.-+.-+.-....|++..|...|..++ .+|.+..+...++.+|...|+.+.|...+.. .|.....+ ......+
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~----lP~~~~~~-~~~~l~a~ 209 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA----LPLQAQDK-AAHGLQAQ 209 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh----Ccccchhh-HHHHHHHH
Confidence 345666777888999999999999999 9999999999999999999999999885543 33332111 1111111
Q ss_pred -HHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCc--cHHHHHH
Q psy8160 130 -HLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPK--SGQSLYL 206 (324)
Q Consensus 130 -~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~ 206 (324)
..+.......+. ..+++.+..+ |++.. +-+.++..+.. .|+.+.|++.+-..+..+.. +..+.-.
T Consensus 210 i~ll~qaa~~~~~-~~l~~~~aad--Pdd~~--aa~~lA~~~~~-------~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~ 277 (304)
T COG3118 210 IELLEQAAATPEI-QDLQRRLAAD--PDDVE--AALALADQLHL-------VGRNEAALEHLLALLRRDRGFEDGEARKT 277 (304)
T ss_pred HHHHHHHhcCCCH-HHHHHHHHhC--CCCHH--HHHHHHHHHHH-------cCCHHHHHHHHHHHHHhcccccCcHHHHH
Confidence 222233322222 2345556667 88744 77888888865 44899999988888876543 3344444
Q ss_pred HHHHHHHcC
Q psy8160 207 LGRCFAAVG 215 (324)
Q Consensus 207 lg~~~~~~~ 215 (324)
+=.++...|
T Consensus 278 lle~f~~~g 286 (304)
T COG3118 278 LLELFEAFG 286 (304)
T ss_pred HHHHHHhcC
Confidence 444444444
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.016 Score=39.28 Aligned_cols=65 Identities=15% Similarity=0.151 Sum_probs=52.4
Q ss_pred HHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC--HHHHHHhHHHHhhcCC
Q psy8160 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN--ADTWCSIGNKDFSNNS 250 (324)
Q Consensus 186 A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~~~ 250 (324)
.+..+++.+..+|.+.++.+.+|..+...|++++|++.+-.++..+++. ..+...+-.++...|.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 4667888999999999999999999999999999999999999998876 5566666666666666
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0053 Score=36.72 Aligned_cols=42 Identities=17% Similarity=0.069 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHH
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 243 (324)
+.+|.+|..+..+|+|++|..+.+.+++++|++..+......
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 467889999999999999999999999999999887654433
|
|
| >KOG1308|consensus | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0005 Score=57.12 Aligned_cols=79 Identities=16% Similarity=0.104 Sum_probs=74.7
Q ss_pred chhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 180 SHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
.|.++.|++.+..+++++|.....+...+.++..++++..|+..|..++.++|+...-+...|.....+|+ |++|.+.+
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~-~e~aa~dl 205 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGN-WEEAAHDL 205 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhc-hHHHHHHH
Confidence 44899999999999999999999999999999999999999999999999999999999999999999999 99998876
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.26 Score=42.68 Aligned_cols=176 Identities=10% Similarity=0.019 Sum_probs=111.2
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-c----CCCCchhhHHHHHHHHh---cccHHHHHHHHHHHHHhcCCCcccH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-I----DASPCTFTKLEGLMFKV---NNEYDSALKHLTLCLIDASPCTFTK 121 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~----~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~~l~~~~~~~~~~ 121 (324)
.+++...+-.+|....+|+.-++..+..- . -+.........|..+.. .|+.++|+..+..++.......
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~--- 216 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPD--- 216 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCC---
Confidence 35577788889999999999888888665 3 23334445556777777 7999999999999665433322
Q ss_pred HHHHHHHHHHHHHh---------hcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHH--
Q psy8160 122 LEVRFHIAHLHEVQ---------RKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCL-- 190 (324)
Q Consensus 122 ~~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~-- 190 (324)
++++..+|.+|... ...++|+..|.++...+ |+.. .-.+++.+........ ..-.+..+.-
T Consensus 217 ~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y---~GIN~AtLL~~~g~~~---~~~~el~~i~~~ 288 (374)
T PF13281_consen 217 PDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYY---SGINAATLLMLAGHDF---ETSEELRKIGVK 288 (374)
T ss_pred hHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--cccc---chHHHHHHHHHcCCcc---cchHHHHHHHHH
Confidence 47888888888643 24789999999999988 6542 2233333332211110 0111111111
Q ss_pred -HHHh-hhC--CccHHH--HHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH
Q psy8160 191 -QKSI-EAD--PKSGQS--LYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNAD 236 (324)
Q Consensus 191 -~~al-~~~--~~~~~~--~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 236 (324)
...+ +.. ....+. +-.++.+..-.|++++|++++++++.+.|....
T Consensus 289 l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 289 LSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 1111 111 111233 335677788899999999999999998766543
|
|
| >KOG4507|consensus | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0041 Score=55.55 Aligned_cols=106 Identities=12% Similarity=0.090 Sum_probs=83.1
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHH
Q psy8160 129 AHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLG 208 (324)
Q Consensus 129 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg 208 (324)
|......|+...|+.++..++... |... ...+.+++.+... .+-.-+|-.++.+++.+....|-..+.+|
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~--p~~~-~v~~v~la~~~~~-------~~~~~da~~~l~q~l~~~~sepl~~~~~g 683 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLA--PLQQ-DVPLVNLANLLIH-------YGLHLDATKLLLQALAINSSEPLTFLSLG 683 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccC--hhhh-cccHHHHHHHHHH-------hhhhccHHHHHHHHHhhcccCchHHHhcc
Confidence 333445689999999999998877 5431 2356677777654 23566789999999999888888899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHH
Q psy8160 209 RCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNK 244 (324)
Q Consensus 209 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 244 (324)
+.+....+.+.|++.|+.|++.+|+++..-..|-.+
T Consensus 684 ~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 684 NAYLALKNISGALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred hhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 999999999999999999999999998876655433
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.031 Score=38.93 Aligned_cols=48 Identities=19% Similarity=0.360 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q psy8160 184 TLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKS 231 (324)
Q Consensus 184 ~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 231 (324)
-.+++++.++..+.|..+..++.+|.-+-...-|+++..-.++++.+.
T Consensus 61 l~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 61 LGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 348889999999999999999999987777777888888888887653
|
|
| >KOG3824|consensus | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0028 Score=52.11 Aligned_cols=64 Identities=16% Similarity=0.230 Sum_probs=59.1
Q ss_pred chhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHH
Q psy8160 180 SHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 243 (324)
.|+.++|...|+.++.++|.+++++..+|......++.-+|-.+|-+|+.++|.+.++..+.+.
T Consensus 129 ~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 129 DGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred ccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 4489999999999999999999999999999999999999999999999999999998876543
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.13 Score=38.58 Aligned_cols=100 Identities=13% Similarity=0.033 Sum_probs=82.0
Q ss_pred chhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 180 SHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
.++.+++...+.-.--+.|..+..-..-|++++..|++.+|+..++.+....|..+.+--.++.|+...++
T Consensus 23 ~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D--------- 93 (160)
T PF09613_consen 23 LGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD--------- 93 (160)
T ss_pred cCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC---------
Confidence 33788888888888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHcCCCCcchHHHHHHHhhhc
Q psy8160 260 NKYRDLGDFLVINNIPTSNNNRQCYNSYSTS 290 (324)
Q Consensus 260 ~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~ 290 (324)
..|...+.--...+--.. +...-+..+..
T Consensus 94 ~~Wr~~A~evle~~~d~~--a~~Lv~~Ll~~ 122 (160)
T PF09613_consen 94 PSWRRYADEVLESGADPD--ARALVRALLAR 122 (160)
T ss_pred hHHHHHHHHHHhcCCChH--HHHHHHHHHHh
Confidence 667776665444444444 56555555543
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0065 Score=36.35 Aligned_cols=40 Identities=18% Similarity=0.149 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHH
Q psy8160 52 EVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEG 91 (324)
Q Consensus 52 ~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la 91 (324)
+.++.+|..+++.|+|++|..+.+.++ .+|++..+..+..
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 467899999999999999999999999 9999977765543
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.03 Score=37.87 Aligned_cols=66 Identities=18% Similarity=0.171 Sum_probs=46.6
Q ss_pred HHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCC--chhhHHHHHHHHhcccHH
Q psy8160 33 AIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASP--CTFTKLEGLMFKVNNEYD 101 (324)
Q Consensus 33 A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~--~~~~~~la~~~~~~~~~~ 101 (324)
.+..+++.+..+|+ +.++.+.+|..+...|+++.|++.+-.++ .++++ ..+...+-.++...|.-+
T Consensus 7 ~~~al~~~~a~~P~---D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 7 DIAALEAALAANPD---DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHHSTT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred cHHHHHHHHHcCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 46677888888876 45689999999999999999999999999 77655 555555555555555433
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.42 Score=41.98 Aligned_cols=51 Identities=8% Similarity=-0.001 Sum_probs=42.3
Q ss_pred HHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHhhc
Q psy8160 268 FLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYRDL 322 (324)
Q Consensus 268 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 322 (324)
.+...|++.+ +.-+-.-..++.| +|.+..-++. +....++|.+|++.++++
T Consensus 471 yLysqgey~k--c~~ys~WL~~iaP-S~~~~RLlGl-~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 471 YLYSQGEYHK--CYLYSSWLTKIAP-SPQAYRLLGL-CLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHhcccHHH--HHHHHHHHHHhCC-cHHHHHHHHH-HHHHHhhHHHHHHHHHhC
Confidence 3567899999 9999899999999 6777776664 567889999999999886
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.005 Score=31.95 Aligned_cols=31 Identities=29% Similarity=0.426 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHh-cCCC
Q psy8160 52 EVHLRLGLMFKVNNEYDSALKHLTLCL-IDAS 82 (324)
Q Consensus 52 ~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~ 82 (324)
.+++.+|.++...++++.|..+|++++ .+|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 367888999999999999999999888 7664
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG3364|consensus | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.015 Score=41.82 Aligned_cols=78 Identities=14% Similarity=0.141 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhh-hCCcc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHH
Q psy8160 160 ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIE-ADPKS-GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADT 237 (324)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~~~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 237 (324)
.+..++++|+...-. ...+..+.+.+++..++ ..|.. -+..|.|+..+...++|+.|+.+.+..++..|++..+
T Consensus 32 ~~s~f~lAwaLV~S~----~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSR----DTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred HHHHHHHHHHHHccc----chHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 458889999885411 14478899999999996 44443 3788999999999999999999999999999999877
Q ss_pred HHHh
Q psy8160 238 WCSI 241 (324)
Q Consensus 238 ~~~l 241 (324)
...-
T Consensus 108 ~~Lk 111 (149)
T KOG3364|consen 108 LELK 111 (149)
T ss_pred HHHH
Confidence 5443
|
|
| >KOG2396|consensus | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.017 Score=50.73 Aligned_cols=91 Identities=9% Similarity=-0.005 Sum_probs=73.8
Q ss_pred HHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHh
Q psy8160 185 LAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRD 264 (324)
Q Consensus 185 ~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~ 264 (324)
.-...|+.++...+.+...|.....-..+.+.+.+--..|.+++..+|++++.|..-+.-.+..+.
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~-------------- 154 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINL-------------- 154 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhcc--------------
Confidence 345778888888888999998887777777778899999999999999999999988877666665
Q ss_pred hHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhc
Q psy8160 265 LGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNN 300 (324)
Q Consensus 265 lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 300 (324)
+.+. |...|.+++..+|++|.++..
T Consensus 155 ---------ni~s--aRalflrgLR~npdsp~Lw~e 179 (568)
T KOG2396|consen 155 ---------NIES--ARALFLRGLRFNPDSPKLWKE 179 (568)
T ss_pred ---------chHH--HHHHHHHHhhcCCCChHHHHH
Confidence 3566 888888888888888876554
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.025 Score=46.79 Aligned_cols=62 Identities=16% Similarity=0.121 Sum_probs=53.6
Q ss_pred chhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHh
Q psy8160 180 SHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSI 241 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 241 (324)
.++++.|+.+.+..+.+.|+++.-+...|.+|.+.|.+..|..-++..++..|+++.+-.-.
T Consensus 194 ~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik 255 (269)
T PRK10941 194 EKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIR 255 (269)
T ss_pred cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHH
Confidence 45899999999999999999998888899999999999999999999999999888775443
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.83 Score=43.07 Aligned_cols=278 Identities=17% Similarity=0.145 Sum_probs=161.7
Q ss_pred HHHHHHHHHHhc-cCCCcccchHHHHHHHHHHH-HhccHHHHHHHHHHHh-cC--CCCchh----hHHHHHHHHhcccHH
Q psy8160 31 IKAIKTFQQLLY-VDPSYLRANEVHLRLGLMFK-VNNEYDSALKHLTLCL-ID--ASPCTF----TKLEGLMFKVNNEYD 101 (324)
Q Consensus 31 ~~A~~~~~~~l~-~~p~~~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al-~~--~~~~~~----~~~la~~~~~~~~~~ 101 (324)
..|+..++-+++ ..+.......+++++|.+++ .+.+++.|..++.+++ +. ++..+. ..+++.++...+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 778888888884 33333345668999999988 7899999999999998 44 222222 234788888888777
Q ss_pred HHHHHHHHHHHhcCCCcccHHHHHHHH--HHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHH--HHHHHhhhhhc
Q psy8160 102 SALKHLTLCLIDASPCTFTKLEVRFHI--AHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQL--GWMYHCIDTLG 177 (324)
Q Consensus 102 ~A~~~~~~~l~~~~~~~~~~~~~~~~l--a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l--~~~~~~~~~~~ 177 (324)
|....++.+............-.+++ .......+++..|++.++........+.+....+...+ +.++..
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~----- 191 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLR----- 191 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc-----
Confidence 99999999877555332222222222 22232337999999999998876633344332233332 233322
Q ss_pred ccchhHHHHHHHHHHHhhh------CC----ccHHHHHHHHH--HHHHcCCHHHHHHHHH---HHHcc---CC---C---
Q psy8160 178 EKSHRETLAIHCLQKSIEA------DP----KSGQSLYLLGR--CFAAVGKVHDAFLAYR---NSVEK---SE---G--- 233 (324)
Q Consensus 178 ~~~~~~~~A~~~~~~al~~------~~----~~~~~~~~lg~--~~~~~~~~~~A~~~~~---~al~~---~p---~--- 233 (324)
.+..+++++.++++... +| ..-.+|..+-. ++...|+++.+....+ ..+.. .| .
T Consensus 192 --~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~ 269 (608)
T PF10345_consen 192 --RGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDE 269 (608)
T ss_pred --CCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCC
Confidence 22455566666655321 11 12244544433 4456676655544432 22221 11 0
Q ss_pred C------------------------------HHHHHHhHHHHhhcCCCHHHHHHHH------------------------
Q psy8160 234 N------------------------------ADTWCSIGNKDFSNNSNREDYHQAL------------------------ 259 (324)
Q Consensus 234 ~------------------------------~~~~~~lg~~~~~~~~~~~~A~~~~------------------------ 259 (324)
+ .-++..=|.+....+. .+.|.+++
T Consensus 270 d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~-~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~ 348 (608)
T PF10345_consen 270 DGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGS-MDKSEKFLEKALKQIEKLKIKSPSAPSESLSE 348 (608)
T ss_pred CeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccC-chHHHHHHHHHHHHHHHhhccCCCCCCcCHHH
Confidence 0 0112223555566666 65666555
Q ss_pred -------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcC---CC------hhhhhhchhhhccCChhhHHHHHH
Q psy8160 260 -------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSI---AS------CKHINNNKDFSNNSNREDYHQALN 317 (324)
Q Consensus 260 -------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~---p~------~~~~~~~l~~~~~~~~~~~~~a~~ 317 (324)
.+.+.++.+....+++.. |....+.+.+.. |. .|.+..-.+.. ....|+.+.|+.
T Consensus 349 ~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~--a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~-~q~~g~l~~A~~ 425 (608)
T PF10345_consen 349 ASERIQWLRYLQCYLLFYQIWCNFIRGDWSK--ATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLY-YQSTGDLEAALY 425 (608)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHCcCHHH--HHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHH-HHHcCCHHHHHH
Confidence 344556666777788888 888887666542 22 23333333332 245699999999
Q ss_pred HHh
Q psy8160 318 KYR 320 (324)
Q Consensus 318 ~~~ 320 (324)
.|+
T Consensus 426 ~y~ 428 (608)
T PF10345_consen 426 QYQ 428 (608)
T ss_pred HHh
Confidence 997
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG1464|consensus | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.43 Score=39.05 Aligned_cols=48 Identities=13% Similarity=0.095 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhccCCCcc-cchHHHHHHHHHHHHhccHHHHHHHHHHHh
Q psy8160 31 IKAIKTFQQLLYVDPSYL-RANEVHLRLGLMFKVNNEYDSALKHLTLCL 78 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 78 (324)
++|+..|++++++.|... ..-.++-.+-.+++.+++|++-++.|++.+
T Consensus 44 ~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 44 KEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred HHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 899999999999998532 122355566677888888887777776655
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.58 Score=40.57 Aligned_cols=134 Identities=11% Similarity=0.061 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCC----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC-C-
Q psy8160 161 DICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADP----KSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEG-N- 234 (324)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~- 234 (324)
..+..++.+.+. .|.++.|...+.++....+ ..+.+.+..+.+....|+..+|+..++..+..... .
T Consensus 147 ~~~l~~a~~aRk-------~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~ 219 (352)
T PF02259_consen 147 ETWLKFAKLARK-------AGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNI 219 (352)
T ss_pred HHHHHHHHHHHH-------CCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc
Confidence 345555555544 4578888888888776542 14566777788888888888888888777762211 1
Q ss_pred -HHHHHHhHHHH----hh---cC-CCHHHHHHHHHHHHhhHHHHHHc------CCCCcchHHHHHHHhhhcCCChhhhhh
Q psy8160 235 -ADTWCSIGNKD----FS---NN-SNREDYHQALNKYRDLGDFLVIN------NIPTSNNNRQCYNSYSTSIASCKHINN 299 (324)
Q Consensus 235 -~~~~~~lg~~~----~~---~~-~~~~~A~~~~~~~~~lg~~~~~~------~~~~~~~A~~~~~~al~~~p~~~~~~~ 299 (324)
+.....+.... .. .. . .......-.++..+|...... +..++ ++..|.++++.+|+....+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~--~~~~~~~a~~~~~~~~k~~~ 296 (352)
T PF02259_consen 220 DSISNAELKSGLLESLEVISSTNLD-KESKELKAKAFLLLAKWLDELYSKLSSESSDE--ILKYYKEATKLDPSWEKAWH 296 (352)
T ss_pred ccccHHHHhhccccccccccccchh-hhhHHHHHHHHHHHHHHHHhhccccccccHHH--HHHHHHHHHHhChhHHHHHH
Confidence 11101111000 00 00 1 111111116677777777777 67788 99999999999999887776
Q ss_pred chhhh
Q psy8160 300 NKDFS 304 (324)
Q Consensus 300 ~l~~~ 304 (324)
.++..
T Consensus 297 ~~a~~ 301 (352)
T PF02259_consen 297 SWALF 301 (352)
T ss_pred HHHHH
Confidence 66543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.023 Score=47.04 Aligned_cols=71 Identities=7% Similarity=-0.100 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHH
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNR 281 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~ 281 (324)
....++-.++...++++.|+.+.+..+.++|+++.-|...|.+|.+.|. +.. |.
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c------------------------~~~--A~ 235 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDC------------------------EHV--AL 235 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------------------cHH--HH
Confidence 4566788899999999999999999999999999999999999999888 455 77
Q ss_pred HHHHHhhhcCCChhhhh
Q psy8160 282 QCYNSYSTSIASCKHIN 298 (324)
Q Consensus 282 ~~~~~al~~~p~~~~~~ 298 (324)
..++..++..|++|.+.
T Consensus 236 ~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 236 SDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHhCCCchhHH
Confidence 77777777777777543
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=96.34 E-value=1 Score=42.97 Aligned_cols=100 Identities=9% Similarity=0.086 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHh--c-CCCCc-------hhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcc-cH
Q psy8160 53 VHLRLGLMFKVNNEYDSALKHLTLCL--I-DASPC-------TFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTF-TK 121 (324)
Q Consensus 53 ~~~~lg~~~~~~~~~~~A~~~~~~al--~-~~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~-~~ 121 (324)
.....+.......++.+|..+..++. . .|+.. .+.-+.|.+....|+++.|++..+.++..-|.... ..
T Consensus 417 Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r 496 (894)
T COG2909 417 LVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSR 496 (894)
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhh
Confidence 44455666677888888888887766 2 23222 22333578888899999999999999988777654 56
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC
Q psy8160 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKED 152 (324)
Q Consensus 122 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 152 (324)
..+...+|.+..-.|++++|..+.+++.+..
T Consensus 497 ~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a 527 (894)
T COG2909 497 IVALSVLGEAAHIRGELTQALALMQQAEQMA 527 (894)
T ss_pred hhhhhhhhHHHHHhchHHHHHHHHHHHHHHH
Confidence 6778889999999999999999999988764
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.58 Score=40.15 Aligned_cols=122 Identities=13% Similarity=0.109 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhc--
Q psy8160 100 YDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLG-- 177 (324)
Q Consensus 100 ~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~-- 177 (324)
.+.-+..+++||..+|.+. .++..+-.+.....+.++..+-+++++..+ |++.. .|...-... +...+
T Consensus 47 ~E~klsilerAL~~np~~~----~L~l~~l~~~~~~~~~~~l~~~we~~l~~~--~~~~~--LW~~yL~~~--q~~~~~f 116 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSE----RLLLGYLEEGEKVWDSEKLAKKWEELLFKN--PGSPE--LWREYLDFR--QSNFASF 116 (321)
T ss_pred HHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCChH--HHHHHHHHH--HHHhccC
Confidence 3455677888888877554 555555555556667777778888888887 76633 444332222 11111
Q ss_pred ---ccchhHHHHHHHHHHHhhhC----Ccc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q psy8160 178 ---EKSHRETLAIHCLQKSIEAD----PKS-------GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKS 231 (324)
Q Consensus 178 ---~~~~~~~~A~~~~~~al~~~----~~~-------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 231 (324)
+...-+.+++..+....... +.. ..+...+.......|..+.|+..++-.++++
T Consensus 117 ~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 117 TVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred cHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 11123334444433333221 000 1345566667778899999999998888865
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=96.18 E-value=1.2 Score=42.07 Aligned_cols=249 Identities=12% Similarity=0.036 Sum_probs=145.3
Q ss_pred HHHHHHHHHHhccCCC--ccc-chHHHHHHHHHHHHhccHHHHHHHHHHHh-c-CC--CCchhh--HHH-HHHHHhcccH
Q psy8160 31 IKAIKTFQQLLYVDPS--YLR-ANEVHLRLGLMFKVNNEYDSALKHLTLCL-I-DA--SPCTFT--KLE-GLMFKVNNEY 100 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~--~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~-~~--~~~~~~--~~l-a~~~~~~~~~ 100 (324)
+.|..+.++++.+... +.. .-.+.+-++.++.+.+... |+...++.+ . +. .....+ ..+ ..+....+++
T Consensus 77 ~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~ 155 (608)
T PF10345_consen 77 DLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDY 155 (608)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccH
Confidence 9999999999887743 211 1234556778888777766 999999988 2 22 111111 112 3333334899
Q ss_pred HHHHHHHHHHHHhcC--CCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCC------CCCchhhHHHHHHHHHHHh
Q psy8160 101 DSALKHLTLCLIDAS--PCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDD------LPVHLKADICRQLGWMYHC 172 (324)
Q Consensus 101 ~~A~~~~~~~l~~~~--~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~~~~~l~~~~~~ 172 (324)
..|++.++....... .+.....-+....+.++...+..+.+++..+++..... .+....-.++..+-.+...
T Consensus 156 ~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~ 235 (608)
T PF10345_consen 156 NAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCS 235 (608)
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHH
Confidence 999999999876643 22222222333346677777878888888887754321 1111112355555444432
Q ss_pred hhhhcccchhHHHHHHHHHHHhhh---CC---c---c-----------------H-------------HHHHHHHHHHHH
Q psy8160 173 IDTLGEKSHRETLAIHCLQKSIEA---DP---K---S-----------------G-------------QSLYLLGRCFAA 213 (324)
Q Consensus 173 ~~~~~~~~~~~~~A~~~~~~al~~---~~---~---~-----------------~-------------~~~~~lg~~~~~ 213 (324)
.. .|+ .....+.+.-++..++. .| . + + -++..-|.+...
T Consensus 236 l~-~~~-~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~ 313 (608)
T PF10345_consen 236 LQ-QGD-VKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLY 313 (608)
T ss_pred HH-cCC-HHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhh
Confidence 11 121 11122222223322221 11 0 0 1 123334666777
Q ss_pred cCCHHHHHHHHHHHHccC-------CCC-------------------HHHHHHhHHHHhhcCCCHHHHHHHH--------
Q psy8160 214 VGKVHDAFLAYRNSVEKS-------EGN-------------------ADTWCSIGNKDFSNNSNREDYHQAL-------- 259 (324)
Q Consensus 214 ~~~~~~A~~~~~~al~~~-------p~~-------------------~~~~~~lg~~~~~~~~~~~~A~~~~-------- 259 (324)
.+..++|.+++.++++.- |.. ....+.++.+..-.++ +..|....
T Consensus 314 ~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~-~~~a~~~l~~~~~~~~ 392 (608)
T PF10345_consen 314 KGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGD-WSKATQELEFMRQLCQ 392 (608)
T ss_pred ccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcC-HHHHHHHHHHHHHHHh
Confidence 777778888888887531 111 1123456777888899 98887666
Q ss_pred ------------HHHHhhHHHHHHcCCCCcchHHHHHH
Q psy8160 260 ------------NKYRDLGDFLVINNIPTSNNNRQCYN 285 (324)
Q Consensus 260 ------------~~~~~lg~~~~~~~~~~~~~A~~~~~ 285 (324)
.+++..|..+...|+.+. |...|.
T Consensus 393 ~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~--A~~~y~ 428 (608)
T PF10345_consen 393 RSPSKLYESLYPLLHYLLGLYYQSTGDLEA--ALYQYQ 428 (608)
T ss_pred cCccchhhhhhHHHHHHHHHHHHHcCCHHH--HHHHHh
Confidence 446788999999999999 999998
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.35 Score=42.14 Aligned_cols=102 Identities=12% Similarity=0.022 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCC-chhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCC----
Q psy8160 124 VRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPV-HLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADP---- 198 (324)
Q Consensus 124 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~---- 198 (324)
+.+.........|-+..|.+..+-++.++ |. +.. -+...+-....+ .++++=-+.+++.......
T Consensus 105 al~r~i~~L~~RG~~rTAlE~~KlLlsLd--p~~DP~-g~ll~ID~~ALr-------s~~y~~Li~~~~~~~~~~~~~~~ 174 (360)
T PF04910_consen 105 ALFRYIQSLGRRGCWRTALEWCKLLLSLD--PDEDPL-GVLLFIDYYALR-------SRQYQWLIDFSESPLAKCYRNWL 174 (360)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcC--CCCCcc-hhHHHHHHHHHh-------cCCHHHHHHHHHhHhhhhhhhhh
Confidence 45555677778899999999999999999 65 321 133333322222 2255555555555443211
Q ss_pred -ccHHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHccCCCCH
Q psy8160 199 -KSGQSLYLLGRCFAAVGKV---------------HDAFLAYRNSVEKSEGNA 235 (324)
Q Consensus 199 -~~~~~~~~lg~~~~~~~~~---------------~~A~~~~~~al~~~p~~~ 235 (324)
.-|..-+.++.+++..++. ++|-..+.+|+...|.-.
T Consensus 175 ~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl 227 (360)
T PF04910_consen 175 SLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVL 227 (360)
T ss_pred hhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHH
Confidence 1235667788888888888 899999999999887543
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.11 Score=40.31 Aligned_cols=102 Identities=12% Similarity=-0.029 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCc---hhhHHHHHHHHhcccHHHHHHHHHHHHHhcCC--CcccHHHH
Q psy8160 51 NEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPC---TFTKLEGLMFKVNNEYDSALKHLTLCLIDASP--CTFTKLEV 124 (324)
Q Consensus 51 ~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~~ 124 (324)
..++..+|..|...||++.|++.|.++. -..+.. .....+-.+....+++.....+..++-..... +...+..+
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 3578899999999999999999999977 322222 22334577777889999999999988544332 22222233
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHhcC
Q psy8160 125 RFHIAHLHEVQRKYKTAKDSYEQLLKED 152 (324)
Q Consensus 125 ~~~la~~~~~~~~~~~A~~~~~~al~~~ 152 (324)
...-|..+...++|.+|...|-.+....
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 4444777788899999999998776544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG2396|consensus | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.083 Score=46.66 Aligned_cols=89 Identities=6% Similarity=-0.005 Sum_probs=68.4
Q ss_pred HHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCC-HHH
Q psy8160 141 AKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGK-VHD 219 (324)
Q Consensus 141 A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~-~~~ 219 (324)
-...|+.++... +.++. .|..-.....+ .+.+.+--..|.+++..+|++++.|..-+.-.+..+. .+.
T Consensus 90 Iv~lyr~at~rf--~~D~~--lW~~yi~f~kk-------~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~s 158 (568)
T KOG2396|consen 90 IVFLYRRATNRF--NGDVK--LWLSYIAFCKK-------KKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIES 158 (568)
T ss_pred HHHHHHHHHHhc--CCCHH--HHHHHHHHHHH-------hcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHH
Confidence 345778888877 66533 55553333222 2247778889999999999999999998877666665 999
Q ss_pred HHHHHHHHHccCCCCHHHHHH
Q psy8160 220 AFLAYRNSVEKSEGNADTWCS 240 (324)
Q Consensus 220 A~~~~~~al~~~p~~~~~~~~ 240 (324)
|...|.++++.+|++|..|..
T Consensus 159 aRalflrgLR~npdsp~Lw~e 179 (568)
T KOG2396|consen 159 ARALFLRGLRFNPDSPKLWKE 179 (568)
T ss_pred HHHHHHHHhhcCCCChHHHHH
Confidence 999999999999999999864
|
|
| >KOG1464|consensus | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.67 Score=37.97 Aligned_cols=204 Identities=12% Similarity=0.088 Sum_probs=112.3
Q ss_pred hccHHHHHHHHHHHh-cCCCCchhhHH----HHHHHHhcccHHHHHHHHHHHHHhcCCCcc--cHHHHHHHHHHHHHHhh
Q psy8160 64 NNEYDSALKHLTLCL-IDASPCTFTKL----EGLMFKVNNEYDSALKHLTLCLIDASPCTF--TKLEVRFHIAHLHEVQR 136 (324)
Q Consensus 64 ~~~~~~A~~~~~~al-~~~~~~~~~~~----la~~~~~~~~~~~A~~~~~~~l~~~~~~~~--~~~~~~~~la~~~~~~~ 136 (324)
..+.++|+..|++++ ..+....+..- +-.+...+++|++-.+.|.+.+.-...... ........+-..-....
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 458999999999999 88777665433 577888999999999999999853211000 00011112211111122
Q ss_pred cHHHHHHHHHHHHh---cCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH---------HHH
Q psy8160 137 KYKTAKDSYEQLLK---EDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG---------QSL 204 (324)
Q Consensus 137 ~~~~A~~~~~~al~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~---------~~~ 204 (324)
+.+--.+.|+..++ ... ...+...+-..+|.+|+.....+ +.++-+.-+.+..+.+.... ++|
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAK-NeRLWFKTNtKLgkl~fd~~e~~----kl~KIlkqLh~SCq~edGedD~kKGtQLLEiY 194 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAK-NERLWFKTNTKLGKLYFDRGEYT----KLQKILKQLHQSCQTEDGEDDQKKGTQLLEIY 194 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhh-cceeeeeccchHhhhheeHHHHH----HHHHHHHHHHHHhccccCchhhhccchhhhhH
Confidence 22222233333322 110 11122335567788886633222 33344444444443322111 333
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCCCH--HHH----HHhHHHHhhcCCCHHHHHHHH------------------H
Q psy8160 205 YLLGRCFAAVGKVHDAFLAYRNSVEKSEGNA--DTW----CSIGNKDFSNNSNREDYHQAL------------------N 260 (324)
Q Consensus 205 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~----~~lg~~~~~~~~~~~~A~~~~------------------~ 260 (324)
-.--++|-.+++-.+-...|++++.+...-| ... -.=|..+.+.|+ |++|-..| -
T Consensus 195 AlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~-fe~AhTDFFEAFKNYDEsGspRRttCL 273 (440)
T KOG1464|consen 195 ALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGE-FEKAHTDFFEAFKNYDESGSPRRTTCL 273 (440)
T ss_pred hhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccch-HHHHHhHHHHHHhcccccCCcchhHHH
Confidence 3334667777777777788999987764432 222 223556788888 99887666 3
Q ss_pred HHHhhHHHHHHcC
Q psy8160 261 KYRDLGDFLVINN 273 (324)
Q Consensus 261 ~~~~lg~~~~~~~ 273 (324)
.|.-|+..+.+.|
T Consensus 274 KYLVLANMLmkS~ 286 (440)
T KOG1464|consen 274 KYLVLANMLMKSG 286 (440)
T ss_pred HHHHHHHHHHHcC
Confidence 4555666666655
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.79 Score=39.97 Aligned_cols=152 Identities=20% Similarity=0.105 Sum_probs=98.7
Q ss_pred hccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-c-C----CCC---------------------chhhHH---H
Q psy8160 41 LYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-I-D----ASP---------------------CTFTKL---E 90 (324)
Q Consensus 41 l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~-~----~~~---------------------~~~~~~---l 90 (324)
+...|- -.+.+..++.++..+|+.+.|.+..++|+ . + |.. ..++.. .
T Consensus 33 l~~~Py---HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~ 109 (360)
T PF04910_consen 33 LQKNPY---HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRY 109 (360)
T ss_pred HHHCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHH
Confidence 344543 45689999999999999999999999987 3 1 111 111111 3
Q ss_pred HHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC------CCCCchhhHHHH
Q psy8160 91 GLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKED------DLPVHLKADICR 164 (324)
Q Consensus 91 a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~~~~ 164 (324)
...+...|-+..|+++.+-.+..+|..... -+++.+=......++++--++.++...... ..|+ ..+
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~--g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn-----~a~ 182 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPL--GVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN-----FAF 182 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcc--hhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc-----HHH
Confidence 566678899999999999999998884321 345555555566677776677766654421 1132 455
Q ss_pred HHHHHHHhhhhh--------cccchhHHHHHHHHHHHhhhCCccHH
Q psy8160 165 QLGWMYHCIDTL--------GEKSHRETLAIHCLQKSIEADPKSGQ 202 (324)
Q Consensus 165 ~l~~~~~~~~~~--------~~~~~~~~~A~~~~~~al~~~~~~~~ 202 (324)
..+.+++..+.. .......+.|...+.+|+...|.-..
T Consensus 183 S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~ 228 (360)
T PF04910_consen 183 SIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLV 228 (360)
T ss_pred HHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHH
Confidence 556666553221 00122458899999999999885443
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.22 Score=36.80 Aligned_cols=97 Identities=9% Similarity=-0.034 Sum_probs=83.4
Q ss_pred hhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHHH
Q psy8160 181 HRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALN 260 (324)
Q Consensus 181 ~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~ 260 (324)
.+.+++...+.-.--+.|+.+..-..-|.++...|+|.+|+..++...+..+..+-.--.++.|+..+|+ .
T Consensus 24 ~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D---------p 94 (153)
T TIGR02561 24 ADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD---------A 94 (153)
T ss_pred CCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC---------h
Confidence 3778888888887789999999999999999999999999999999988888888888899999999999 7
Q ss_pred HHHhhHHHHHHcCCCCcchHHHHHHHhh
Q psy8160 261 KYRDLGDFLVINNIPTSNNNRQCYNSYS 288 (324)
Q Consensus 261 ~~~~lg~~~~~~~~~~~~~A~~~~~~al 288 (324)
.|...+.-....+...+ |+..-+...
T Consensus 95 ~Wr~~A~~~le~~~~~~--a~~Lv~al~ 120 (153)
T TIGR02561 95 EWHVHADEVLARDADAD--AVALVRALL 120 (153)
T ss_pred HHHHHHHHHHHhCCCHh--HHHHHHHHh
Confidence 78888877777777777 777666554
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.13 Score=35.88 Aligned_cols=91 Identities=12% Similarity=0.065 Sum_probs=60.4
Q ss_pred HHHHHHhccHHHHHHHHHHHh-cCCCCc---hhhHHHHHHHHhcc-----------cHHHHHHHHHHHHHhcCCCcccHH
Q psy8160 58 GLMFKVNNEYDSALKHLTLCL-IDASPC---TFTKLEGLMFKVNN-----------EYDSALKHLTLCLIDASPCTFTKL 122 (324)
Q Consensus 58 g~~~~~~~~~~~A~~~~~~al-~~~~~~---~~~~~la~~~~~~~-----------~~~~A~~~~~~~l~~~~~~~~~~~ 122 (324)
+.-++..|+.-+|++..+..+ ..+... ..+...|.++..+. -.-.++++|.++....|.+ +
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~----A 78 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDS----A 78 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhH----H
Confidence 456677888888888888888 555554 34444566665442 2245677777777666665 3
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcC
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKED 152 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 152 (324)
..++.+|.-+-....|++++.-.++++...
T Consensus 79 ~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 79 HSLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 667777776666667777777777776553
|
|
| >KOG3364|consensus | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.31 Score=35.29 Aligned_cols=79 Identities=16% Similarity=0.143 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHh---hcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCc
Q psy8160 123 EVRFHIAHLHEVQ---RKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPK 199 (324)
Q Consensus 123 ~~~~~la~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 199 (324)
+..+++++++... .+..+.+.+++.++... .|. ..-+..+.++.-+++ .++|+.++.+.+..++..|+
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~-~rRe~lyYLAvg~yR-------lkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPE-RRRECLYYLAVGHYR-------LKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-Ccc-cchhhhhhhHHHHHH-------HhhHHHHHHHHHHHHhhCCC
Confidence 6788888888765 45677889999998733 133 235577777777766 55999999999999999999
Q ss_pred cHHHHHHHHHH
Q psy8160 200 SGQSLYLLGRC 210 (324)
Q Consensus 200 ~~~~~~~lg~~ 210 (324)
+.++.-..-.+
T Consensus 104 n~Qa~~Lk~~i 114 (149)
T KOG3364|consen 104 NRQALELKETI 114 (149)
T ss_pred cHHHHHHHHHH
Confidence 99876554443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.23 Score=37.29 Aligned_cols=83 Identities=13% Similarity=0.002 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Q psy8160 53 VHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHL 131 (324)
Q Consensus 53 ~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~ 131 (324)
.++.+..+-...++.+++...+...- ..|.........|.++...|++.+|+..++.+....|..+ .+--.++.|
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p----~~kALlA~C 87 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFP----YAKALLALC 87 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCh----HHHHHHHHH
Confidence 45556666667777777777777666 7788888888888888888888888888777655554443 344456777
Q ss_pred HHHhhcHH
Q psy8160 132 HEVQRKYK 139 (324)
Q Consensus 132 ~~~~~~~~ 139 (324)
+...++.+
T Consensus 88 L~~~~D~~ 95 (160)
T PF09613_consen 88 LYALGDPS 95 (160)
T ss_pred HHHcCChH
Confidence 77776643
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.49 Score=33.46 Aligned_cols=50 Identities=12% Similarity=0.100 Sum_probs=35.8
Q ss_pred chhHHHHHHHHHHHhhhCCccH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q psy8160 180 SHRETLAIHCLQKSIEADPKSG------------QSLYLLGRCFAAVGKVHDAFLAYRNSVE 229 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~~~------------~~~~~lg~~~~~~~~~~~A~~~~~~al~ 229 (324)
-+-+++|...++++++....-| -.+-.|+..+..+|+|++++..-.+++.
T Consensus 22 ~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~ 83 (144)
T PF12968_consen 22 DGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALR 83 (144)
T ss_dssp HT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 3478899999999987543322 3455678889999999998888888774
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.27 Score=38.10 Aligned_cols=105 Identities=8% Similarity=-0.036 Sum_probs=72.5
Q ss_pred chhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchh--h-
Q psy8160 84 CTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK--A- 160 (324)
Q Consensus 84 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~- 160 (324)
..++..+|..|...|+.+.|++.|.++..... +.....++++.+-.+....+++.....+..++-..-..+.+.. .
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~-~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCT-SPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 34556689999999999999999999775432 3335567888888888899999999988888865542222211 1
Q ss_pred -HHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCC
Q psy8160 161 -DICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADP 198 (324)
Q Consensus 161 -~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 198 (324)
.++..+..+. .++|..|...|-.+.....
T Consensus 115 lk~~~gL~~l~---------~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 115 LKVYEGLANLA---------QRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHHHHHHH---------hchHHHHHHHHHccCcCCC
Confidence 1223333222 4489999988888865553
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG4014|consensus | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.77 Score=35.27 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=16.6
Q ss_pred chHHHHHHHHHHH-HhccHHHHHHHHHHHh
Q psy8160 50 ANEVHLRLGLMFK-VNNEYDSALKHLTLCL 78 (324)
Q Consensus 50 ~~~~~~~lg~~~~-~~~~~~~A~~~~~~al 78 (324)
.++....||...- .+.+|+.|.+.|+.-.
T Consensus 33 ~Pe~C~lLgdYlEgi~knF~~A~kv~K~nC 62 (248)
T KOG4014|consen 33 RPESCQLLGDYLEGIQKNFQAAVKVFKKNC 62 (248)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4556666665443 3456666666666433
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.032 Score=31.27 Aligned_cols=29 Identities=21% Similarity=0.335 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEK 230 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 230 (324)
.++.++|.+|...|++++|..++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 56789999999999999999999999875
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.034 Score=43.99 Aligned_cols=55 Identities=20% Similarity=0.283 Sum_probs=52.3
Q ss_pred chhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q psy8160 180 SHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN 234 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 234 (324)
.++.+.|.+.|.+++.+.|.....|+.+|......|+++.|...|++.++++|.+
T Consensus 8 ~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 8 SGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3488889999999999999999999999999999999999999999999999987
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.24 Score=48.27 Aligned_cols=107 Identities=9% Similarity=0.080 Sum_probs=84.7
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchh-hHHHHHHHHHHHhhhh-hcccchhHHHHHHHHHHHhhhCCccHHHH
Q psy8160 127 HIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK-ADICRQLGWMYHCIDT-LGEKSHRETLAIHCLQKSIEADPKSGQSL 204 (324)
Q Consensus 127 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~l~~~~~~~~~-~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 204 (324)
.....+...+.|+.|+..|+++-... |+..+ .++.++.|........ .|+ ...+++|+.-|++. .-.|.-|--|
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~ 555 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESF--PGRKEGYEAQFRLGITLLEKASEQGD-PRDFTQALSEFSYL-HGGVGAPLEY 555 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcC--CCcccchHHHHHhhHHHHHHHHhcCC-hHHHHHHHHHHHHh-cCCCCCchHH
Confidence 34567788899999999999998887 77644 5688999887765332 222 24688899888885 3446667778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHH
Q psy8160 205 YLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADT 237 (324)
Q Consensus 205 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 237 (324)
...|.+|..+|++++=+++|.-|++.-|.+|..
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 556 LGKALVYQRLGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred HhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence 889999999999999999999999999998764
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=95.14 E-value=1.1 Score=41.21 Aligned_cols=45 Identities=13% Similarity=0.112 Sum_probs=29.4
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCC-HHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 210 CFAAVGKVHDAFLAYRNSVEKSEGN-ADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 210 ~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
.+.+.++|++|....++ .|.. ++.++-.|.-+....+ +++|.+.|
T Consensus 782 lHve~~~W~eAFalAe~----hPe~~~dVy~pyaqwLAE~Dr-FeEAqkAf 827 (1081)
T KOG1538|consen 782 LHVETQRWDEAFALAEK----HPEFKDDVYMPYAQWLAENDR-FEEAQKAF 827 (1081)
T ss_pred heeecccchHhHhhhhh----CccccccccchHHHHhhhhhh-HHHHHHHH
Confidence 44455667766655433 2332 4566777888888888 88888876
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.17 Score=34.61 Aligned_cols=57 Identities=19% Similarity=0.219 Sum_probs=38.7
Q ss_pred cccHHHHHHHHHHHHHhcCCCcc-----cHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCC
Q psy8160 97 NNEYDSALKHLTLCLIDASPCTF-----TKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDD 153 (324)
Q Consensus 97 ~~~~~~A~~~~~~~l~~~~~~~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 153 (324)
.|+|.+|++.+.+.++....... ....+..++|.++...|++++|+..+++++.+..
T Consensus 11 ~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 11 SGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred cCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 45555555555555544322222 1235677889999999999999999999998763
|
|
| >KOG1914|consensus | Back alignment and domain information |
|---|
Probab=95.11 E-value=2.5 Score=38.26 Aligned_cols=146 Identities=13% Similarity=0.064 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhc---HHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhh
Q psy8160 100 YDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRK---YKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTL 176 (324)
Q Consensus 100 ~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~ 176 (324)
.+++.++|++++....... ..+++.++..-...-+ ++..-+.+.+++.+.+.... -++.+.-..-.+
T Consensus 309 t~e~~~~yEr~I~~l~~~~---~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t---Lv~~~~mn~irR---- 378 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKEN---KLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT---LVYCQYMNFIRR---- 378 (656)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc---eehhHHHHHHHH----
Confidence 5777888888775422221 2344444443333323 66667778888766522221 133333333322
Q ss_pred cccchhHHHHHHHHHHHhhhCCccHHHHHHHHHH-HHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHH
Q psy8160 177 GEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRC-FAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDY 255 (324)
Q Consensus 177 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A 255 (324)
..-.+.|...|.++-+......+++..-|.+ |...++..-|...|+-.+...++.|..-......+...++ -..|
T Consensus 379 ---~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNd-d~N~ 454 (656)
T KOG1914|consen 379 ---AEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLND-DNNA 454 (656)
T ss_pred ---hhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCc-chhH
Confidence 2246778888888865543333555555543 6778999999999999999999999988888888888888 7777
Q ss_pred HHHH
Q psy8160 256 HQAL 259 (324)
Q Consensus 256 ~~~~ 259 (324)
...|
T Consensus 455 R~LF 458 (656)
T KOG1914|consen 455 RALF 458 (656)
T ss_pred HHHH
Confidence 7666
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=95.05 E-value=1.3 Score=34.73 Aligned_cols=53 Identities=13% Similarity=0.098 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC----CHHHHHHhHHHHhhcCCCHHHH
Q psy8160 201 GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEG----NADTWCSIGNKDFSNNSNREDY 255 (324)
Q Consensus 201 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~~~~~~~A 255 (324)
++..+.||..|. ..+.++|+..+.+++++.+. +++....|+.++.+.|+ ++.|
T Consensus 141 ~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~-~e~A 197 (203)
T PF11207_consen 141 AELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN-YEQA 197 (203)
T ss_pred HHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc-hhhh
Confidence 444444443333 33344444444444443322 24444444444444444 4443
|
|
| >KOG4014|consensus | Back alignment and domain information |
|---|
Probab=94.97 E-value=1.2 Score=34.17 Aligned_cols=54 Identities=11% Similarity=0.113 Sum_probs=23.2
Q ss_pred cHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhh
Q psy8160 137 KYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEA 196 (324)
Q Consensus 137 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 196 (324)
++..|+..|..+...+ . ..+...+|.++..-+...+..-+.++|++++.++..+
T Consensus 88 ~l~~a~r~~~~aC~~n--~----~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl 141 (248)
T KOG4014|consen 88 SLSKAIRPMKIACDAN--I----PQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDL 141 (248)
T ss_pred CHHHHHHHHHHHhccC--C----HHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccC
Confidence 4555555555554433 1 2255555555533211111111244555555555444
|
|
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.093 Score=28.51 Aligned_cols=33 Identities=27% Similarity=0.238 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHccCCCC
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLA--YRNSVEKSEGN 234 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~--~~~al~~~p~~ 234 (324)
+.|+.+|..+..+|++++|+.. |+-+..++|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 5678888888999999999998 44776666643
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >KOG3824|consensus | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.1 Score=43.23 Aligned_cols=62 Identities=11% Similarity=0.038 Sum_probs=42.2
Q ss_pred HHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCc
Q psy8160 57 LGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCT 118 (324)
Q Consensus 57 lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~ 118 (324)
.+.-....|+.++|.+.|..++ .+|++..+....|.+....++.-+|-.+|-+++...|.+.
T Consensus 122 ~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ns 184 (472)
T KOG3824|consen 122 AAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNS 184 (472)
T ss_pred HHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCch
Confidence 3334455677777777777777 7777777777777777777777777777777776666554
|
|
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=94.76 E-value=2.5 Score=39.54 Aligned_cols=183 Identities=13% Similarity=0.003 Sum_probs=102.6
Q ss_pred HHhhhhccccccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHH----------HHHHHHHHhccHHHHHHHH
Q psy8160 7 KNLVEGIVTSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHL----------RLGLMFKVNNEYDSALKHL 74 (324)
Q Consensus 7 ~~~~~~~~~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~----------~lg~~~~~~~~~~~A~~~~ 74 (324)
++..+.-++|..|..|+...+.-- +.|..+|-++-. ++. ...-- ..+.+-..-|+|++|.+.|
T Consensus 683 ~qfiEdnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d----Y~G-ik~vkrl~~i~s~~~q~aei~~~~g~feeaek~y 757 (1189)
T KOG2041|consen 683 IQFIEDNPHPRLWRLLAEYALFKLALDTAEHAFVRCGD----YAG-IKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLY 757 (1189)
T ss_pred HHHHhcCCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc----ccc-hhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhh
Confidence 345567778888877777544322 666666655432 221 11122 2334444558899999888
Q ss_pred HHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC
Q psy8160 75 TLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDL 154 (324)
Q Consensus 75 ~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 154 (324)
-.+- . ..+--.++...|++-.....++..- ...+.....+++.++|..+.....+++|.++|.+.-...
T Consensus 758 ld~d----r---rDLAielr~klgDwfrV~qL~r~g~--~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e-- 826 (1189)
T KOG2041|consen 758 LDAD----R---RDLAIELRKKLGDWFRVYQLIRNGG--SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTE-- 826 (1189)
T ss_pred hccc----h---hhhhHHHHHhhhhHHHHHHHHHccC--CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH--
Confidence 6332 1 1111234445566655555333211 112222455789999999999999999999997743221
Q ss_pred CCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy8160 155 PVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRN 226 (324)
Q Consensus 155 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 226 (324)
+...+++..+ .+++ ++.....-|++...+-.+|..+...|.-++|.+.|-+
T Consensus 827 ----------~~~ecly~le-------~f~~----LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 827 ----------NQIECLYRLE-------LFGE----LEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred ----------hHHHHHHHHH-------hhhh----HHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 1122333222 2222 2333334466777777777777777777777776643
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.076 Score=29.63 Aligned_cols=30 Identities=20% Similarity=0.226 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcC
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKED 152 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 152 (324)
.++.++|.+|...|++++|+.++++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 567889999999999999999999988654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.71 E-value=2.3 Score=38.19 Aligned_cols=66 Identities=12% Similarity=0.190 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH---HHHHhhHHHHHHcCCC
Q psy8160 201 GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL---NKYRDLGDFLVINNIP 275 (324)
Q Consensus 201 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~---~~~~~lg~~~~~~~~~ 275 (324)
++..+.|+ .+.|+.+.|.+.. ...+++..|..||......|+ ++-|.++| .-+-.|..+|...|+.
T Consensus 321 ~~~rFeLA---l~lg~L~~A~~~a-----~~~~~~~~W~~Lg~~AL~~g~-~~lAe~c~~k~~d~~~L~lLy~~~g~~ 389 (443)
T PF04053_consen 321 PDHRFELA---LQLGNLDIALEIA-----KELDDPEKWKQLGDEALRQGN-IELAEECYQKAKDFSGLLLLYSSTGDR 389 (443)
T ss_dssp HHHHHHHH---HHCT-HHHHHHHC-----CCCSTHHHHHHHHHHHHHTTB-HHHHHHHHHHCT-HHHHHHHHHHCT-H
T ss_pred hHHHhHHH---HhcCCHHHHHHHH-----HhcCcHHHHHHHHHHHHHcCC-HHHHHHHHHhhcCccccHHHHHHhCCH
Confidence 34444443 3445555554422 222345555555555555555 55555555 3334444444444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.79 Score=44.92 Aligned_cols=89 Identities=18% Similarity=0.202 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHh----c---cHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVN----N---EYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSA 103 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~----~---~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A 103 (324)
++|+..|++.-...|.-....++.|++|.....+ | .+++|+..|++....|..+--+...|.+|...|+|++-
T Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (932)
T PRK13184 492 DQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGKALVYQRLGEYNEE 571 (932)
T ss_pred HHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhHHHHHHHhhhHHHH
Confidence 9999999999999998777788999999987643 2 58899999997777777777788899999999999999
Q ss_pred HHHHHHHHHhcCCCcc
Q psy8160 104 LKHLTLCLIDASPCTF 119 (324)
Q Consensus 104 ~~~~~~~l~~~~~~~~ 119 (324)
++++.-+++..|..+.
T Consensus 572 ~~~~~~~~~~~~~~~~ 587 (932)
T PRK13184 572 IKSLLLALKRYSQHPE 587 (932)
T ss_pred HHHHHHHHHhcCCCCc
Confidence 9999999998777653
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.034 Score=45.99 Aligned_cols=87 Identities=11% Similarity=-0.030 Sum_probs=54.3
Q ss_pred HHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHH-HHhhcCCCHHHHHHHHHHHHhhH
Q psy8160 188 HCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN-KDFSNNSNREDYHQALNKYRDLG 266 (324)
Q Consensus 188 ~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~-~~~~~~~~~~~A~~~~~~~~~lg 266 (324)
..|.++....|.++..|...+.--...|.+.+--..|.++++.+|.+.+.|...+. -+...
T Consensus 94 f~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~------------------ 155 (435)
T COG5191 94 FELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEI------------------ 155 (435)
T ss_pred EeeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhh------------------
Confidence 34555556667777777776666666667777777777777777777777765322 22222
Q ss_pred HHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhc
Q psy8160 267 DFLVINNIPTSNNNRQCYNSYSTSIASCKHINNN 300 (324)
Q Consensus 267 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 300 (324)
++++. +...|.+++..+|.+|.+|..
T Consensus 156 ------ani~s--~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 156 ------ANIES--SRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred ------ccHHH--HHHHHHhhhccCCCCchHHHH
Confidence 23555 666666677777666666543
|
|
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.18 Score=42.12 Aligned_cols=62 Identities=18% Similarity=0.066 Sum_probs=54.0
Q ss_pred HHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhh
Q psy8160 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFS 247 (324)
Q Consensus 186 A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 247 (324)
|+.+|.+|+.+.|.++..+.+||.++...|+.-.|+=+|-+++....-.+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999998776678899999888887
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >KOG4814|consensus | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.85 Score=41.88 Aligned_cols=98 Identities=21% Similarity=0.146 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCch----hhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCc
Q psy8160 124 VRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHL----KADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPK 199 (324)
Q Consensus 124 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 199 (324)
++.+-|.-++...+|..+++.|...+..- |.+. .+...+.+..||.. ..+.+.|.+++++|-+.+|.
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i--~~D~~~~~FaK~qR~l~~CYL~-------L~QLD~A~E~~~EAE~~d~~ 426 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDI--ISDNYSDRFAKIQRALQVCYLK-------LEQLDNAVEVYQEAEEVDRQ 426 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhc--cchhhhhHHHHHHHHHHHHHhh-------HHHHHHHHHHHHHHHhhccc
Confidence 34444667778889999999999888654 3322 26788888888866 44889999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q psy8160 200 SGQSLYLLGRCFAAVGKVHDAFLAYRNSVEK 230 (324)
Q Consensus 200 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 230 (324)
++-....+-.+....++-++|+.+..+....
T Consensus 427 ~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 427 SPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 9988888888888889999999888777654
|
|
| >KOG1839|consensus | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.74 Score=45.73 Aligned_cols=170 Identities=13% Similarity=0.059 Sum_probs=119.4
Q ss_pred HHHHHHHHHHhccHHHHHH------HHHHHh--cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcC----CCcccH
Q psy8160 54 HLRLGLMFKVNNEYDSALK------HLTLCL--IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDAS----PCTFTK 121 (324)
Q Consensus 54 ~~~lg~~~~~~~~~~~A~~------~~~~al--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~----~~~~~~ 121 (324)
....|......|.+.+|.+ .+.+.. ..|..+..+..++.++...|++++|+..-.++..... .+....
T Consensus 935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t 1014 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNT 1014 (1236)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHH
Confidence 4556666666777776666 776655 5788888999999999999999999998888753322 222234
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC---CCchh-hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhC
Q psy8160 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDL---PVHLK-ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEAD 197 (324)
Q Consensus 122 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 197 (324)
...+.+++...+..++...|...+.++...... |.+.. +.+..+++.++.. .++++.|+.+++.|+...
T Consensus 1015 ~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~-------v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1015 KLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLG-------VEEADTALRYLESALAKN 1087 (1236)
T ss_pred HHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhh-------HHHHHHHHHHHHHHHHHH
Confidence 456778888888888888999888888765311 22211 4466777877644 448999999999998753
Q ss_pred Cc--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q psy8160 198 PK--------SGQSLYLLGRCFAAVGKVHDAFLAYRNSVEK 230 (324)
Q Consensus 198 ~~--------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 230 (324)
.. ....+..+++.+..++++..|+...+....+
T Consensus 1088 ~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1088 KKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred hhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 21 2355667777777777777777776665543
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.51 E-value=2.5 Score=35.47 Aligned_cols=118 Identities=14% Similarity=0.096 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhccC----CCc-ccchHHHHHHHHHHHHhc-cHHHHHHHHHHHh-c----C---CCCch-------hhHH
Q psy8160 31 IKAIKTFQQLLYVD----PSY-LRANEVHLRLGLMFKVNN-EYDSALKHLTLCL-I----D---ASPCT-------FTKL 89 (324)
Q Consensus 31 ~~A~~~~~~~l~~~----p~~-~~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al-~----~---~~~~~-------~~~~ 89 (324)
+.|...|.++-... |+. ..-.++++..|......+ +++.|..+++++. . . ..... ....
T Consensus 10 ~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~ 89 (278)
T PF08631_consen 10 DLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRL 89 (278)
T ss_pred HHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHH
Confidence 55666776665544 321 112457889999999999 9999999999988 4 1 11111 1233
Q ss_pred HHHHHHhcccHHHHHHHHH---HHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC
Q psy8160 90 EGLMFKVNNEYDSALKHLT---LCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKED 152 (324)
Q Consensus 90 la~~~~~~~~~~~A~~~~~---~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 152 (324)
++..+...+.++...++.+ .+-...|.. +.++..-=.+....++.+.+.+.+.+++...
T Consensus 90 La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~----~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 90 LANAYLEWDTYESVEKALNALRLLESEYGNK----PEVFLLKLEILLKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHHHhCCCC----cHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence 6777777776655444322 222222222 2333222223333677888888888888765
|
It is also involved in sporulation []. |
| >KOG3807|consensus | Back alignment and domain information |
|---|
Probab=94.48 E-value=2.7 Score=35.66 Aligned_cols=180 Identities=14% Similarity=0.013 Sum_probs=94.0
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCC----------------
Q psy8160 55 LRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPC---------------- 117 (324)
Q Consensus 55 ~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~---------------- 117 (324)
+.+-....+..+..+-++.-..++ ++|....++.+++.--. .-..+|++.++++++.....
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da 265 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEEA--TTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEA 265 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhh
Confidence 344444556666777777777788 88888887777654221 12334444444444321110
Q ss_pred -----cccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcc---------cchhH
Q psy8160 118 -----TFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGE---------KSHRE 183 (324)
Q Consensus 118 -----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---------~~~~~ 183 (324)
.....-+...++.|...+|+..+|++.|+...+.. |-..-..+.-++-.....+....+ .....
T Consensus 266 ~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~--pl~t~lniheNLiEalLE~QAYADvqavLakYDdislP 343 (556)
T KOG3807|consen 266 QLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEF--PLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLP 343 (556)
T ss_pred hhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCc
Confidence 00112356788999999999999999999988776 422112233333322222110000 01112
Q ss_pred HHHHHHHHHHhhh-----CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhH
Q psy8160 184 TLAIHCLQKSIEA-----DPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242 (324)
Q Consensus 184 ~~A~~~~~~al~~-----~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 242 (324)
..|.-+|..++-. +.-.+++-...|..-. -..|++...+|++.+|..|.....+-
T Consensus 344 kSA~icYTaALLK~RAVa~kFspd~asrRGLS~A----E~~AvEAihRAvEFNPHVPkYLLE~k 403 (556)
T KOG3807|consen 344 KSAAICYTAALLKTRAVSEKFSPETASRRGLSTA----EINAVEAIHRAVEFNPHVPKYLLEMK 403 (556)
T ss_pred chHHHHHHHHHHHHHHHHhhcCchhhhhccccHH----HHHHHHHHHHHhhcCCCCcHHHHHHH
Confidence 2233333332210 0111222222222211 23589999999999999888766543
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.11 Score=43.14 Aligned_cols=62 Identities=3% Similarity=0.060 Sum_probs=54.6
Q ss_pred chhHHHHHHHHHHHhhhCCccHHHHHH-HHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHh
Q psy8160 180 SHRETLAIHCLQKSIEADPKSGQSLYL-LGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSI 241 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~~~~~~~~-lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 241 (324)
.+.+.+--..|.++++.+|.+.+.|.. -+.-+...++++.+...|.+++.++|++|..|...
T Consensus 120 ~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 120 KKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred HHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 346778888999999999999999976 55678889999999999999999999999999653
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=94.41 E-value=1.2 Score=31.54 Aligned_cols=101 Identities=12% Similarity=0.094 Sum_probs=58.3
Q ss_pred HHHHHHHH--HHHHhhcHHHHHHHHHHHHhcCCCCCchh--------hHHHHHHHHHHHhhhhhcccchhHHHHHHH---
Q psy8160 123 EVRFHIAH--LHEVQRKYKTAKDSYEQLLKEDDLPVHLK--------ADICRQLGWMYHCIDTLGEKSHRETLAIHC--- 189 (324)
Q Consensus 123 ~~~~~la~--~~~~~~~~~~A~~~~~~al~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~--- 189 (324)
.++..|+. -....|-|++|...++++++....-+..+ +-++-.++..+.. .++|++++..
T Consensus 8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~-------Lgry~e~L~sA~~ 80 (144)
T PF12968_consen 8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAG-------LGRYDECLQSADR 80 (144)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHH-------TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHh-------hccHHHHHHHHHH
Confidence 34444433 33455789999999999987653221111 2233333333322 3366655544
Q ss_pred ----HHHHhhhCCccHHHH----HHHHHHHHHcCCHHHHHHHHHHHHcc
Q psy8160 190 ----LQKSIEADPKSGQSL----YLLGRCFAAVGKVHDAFLAYRNSVEK 230 (324)
Q Consensus 190 ----~~~al~~~~~~~~~~----~~lg~~~~~~~~~~~A~~~~~~al~~ 230 (324)
|.+-=+++.+....| +..|..+...|+.++|+..|+.+.++
T Consensus 81 aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 81 ALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 444445666666555 56788889999999999999988653
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >KOG1258|consensus | Back alignment and domain information |
|---|
Probab=94.30 E-value=4.2 Score=37.23 Aligned_cols=183 Identities=11% Similarity=-0.004 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Q psy8160 53 VHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHL 131 (324)
Q Consensus 53 ~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~ 131 (324)
.|......-...|+++.....|++++ -......+|...+......|+.+-|...+..+.....+.. +.++..-+.+
T Consensus 299 nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~---~~i~L~~a~f 375 (577)
T KOG1258|consen 299 NWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKT---PIIHLLEARF 375 (577)
T ss_pred HHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCC---cHHHHHHHHH
Confidence 45555566678899999999999999 7788888888888888888999999887777765543333 2566666777
Q ss_pred HHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHH--HHHHHhhhCCcc----HHHHH
Q psy8160 132 HEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIH--CLQKSIEADPKS----GQSLY 205 (324)
Q Consensus 132 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~--~~~~al~~~~~~----~~~~~ 205 (324)
-...|++..|..+++++.... |+.+. ..+...++.++. ++.+.+.. .+...+.....+ +..+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~--pg~v~-~~l~~~~~e~r~--------~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~ 444 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY--PGLVE-VVLRKINWERRK--------GNLEDANYKNELYSSIYEGKENNGILEKLYV 444 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC--Cchhh-hHHHHHhHHHHh--------cchhhhhHHHHHHHHhcccccCcchhHHHHH
Confidence 888899999999999998877 77643 345555666644 13343431 112222111122 23344
Q ss_pred HHHHH-HHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcC
Q psy8160 206 LLGRC-FAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNN 249 (324)
Q Consensus 206 ~lg~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 249 (324)
..+.. +.-.++.+.|...+.++++..|.+...|..+-.......
T Consensus 445 ~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 445 KFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 44433 455688999999999999999999888887776665554
|
|
| >KOG1258|consensus | Back alignment and domain information |
|---|
Probab=94.24 E-value=4.3 Score=37.15 Aligned_cols=261 Identities=8% Similarity=-0.012 Sum_probs=148.7
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHH-HHHHHHhcccHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKL-EGLMFKVNNEYDSALKHLT 108 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~-la~~~~~~~~~~~A~~~~~ 108 (324)
+.+...|...|...|- ....|-.-|..-.+.|..+.+.+.|++++ --|.....|.. ++.+-...|+.+.-...|+
T Consensus 62 ~~~r~~y~~fL~kyPl---~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe 138 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPL---CYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFE 138 (577)
T ss_pred HHHHHHHHHHHhhCcc---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 5566666777766653 33456677777788888889999999888 66666555544 3444445577777777777
Q ss_pred HHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCC----------------CCCc---------------
Q psy8160 109 LCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDD----------------LPVH--------------- 157 (324)
Q Consensus 109 ~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~----------------~~~~--------------- 157 (324)
+|......+.... ..|-..-..-..++++..-...|++.++..- .+..
T Consensus 139 ~A~~~vG~dF~S~-~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~ 217 (577)
T KOG1258|consen 139 RAKSYVGLDFLSD-PLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDV 217 (577)
T ss_pred HHHHhcccchhcc-HHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhH
Confidence 7765544332211 1222221111222333333333333332200 0000
Q ss_pred ----------------------------hhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhh-----CCc---cH
Q psy8160 158 ----------------------------LKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEA-----DPK---SG 201 (324)
Q Consensus 158 ----------------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~~~---~~ 201 (324)
........+..........-+........+..++..+.. .|. +-
T Consensus 218 ~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql 297 (577)
T KOG1258|consen 218 AERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQL 297 (577)
T ss_pred HhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHH
Confidence 000000000000000000000011122223333333221 222 22
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH------------HHHHhhHHHH
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL------------NKYRDLGDFL 269 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~------------~~~~~lg~~~ 269 (324)
..|......-...|+++.....|++++--.....+.|...+.-....|. .+-|-..+ .+...-+.+-
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~-~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGD-VSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCc-hhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 5677777777888999999999999998888899999999998888888 87776555 4555556667
Q ss_pred HHcCCCCcchHHHHHHHhhhcCCChhhhh
Q psy8160 270 VINNIPTSNNNRQCYNSYSTSIASCKHIN 298 (324)
Q Consensus 270 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 298 (324)
...|++.. |...+++..+--|+...+-
T Consensus 377 e~~~n~~~--A~~~lq~i~~e~pg~v~~~ 403 (577)
T KOG1258|consen 377 ESNGNFDD--AKVILQRIESEYPGLVEVV 403 (577)
T ss_pred HhhccHHH--HHHHHHHHHhhCCchhhhH
Confidence 77889999 9999999987778866543
|
|
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.37 Score=43.12 Aligned_cols=93 Identities=11% Similarity=0.069 Sum_probs=74.1
Q ss_pred hhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHc
Q psy8160 135 QRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAV 214 (324)
Q Consensus 135 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 214 (324)
.+....|+..|.+++... |.. ...+.+.+.++......| +.-.|+.....+++++|....+|+.|+.++...
T Consensus 387 ~~~~~~~i~~~s~a~q~~--~~~--~~~l~nraa~lmkRkW~~----d~~~AlrDch~Alrln~s~~kah~~la~aL~el 458 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYV--PDA--IYLLENRAAALMKRKWRG----DSYLALRDCHVALRLNPSIQKAHFRLARALNEL 458 (758)
T ss_pred hHHHHHHHHHHHHHhhhc--cch--hHHHHhHHHHHHhhhccc----cHHHHHHhHHhhccCChHHHHHHHHHHHHHHHH
Confidence 345667888888888877 665 347777777776644444 667799999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHccCCCCH
Q psy8160 215 GKVHDAFLAYRNSVEKSEGNA 235 (324)
Q Consensus 215 ~~~~~A~~~~~~al~~~p~~~ 235 (324)
+++.+|+.+...+....|.+.
T Consensus 459 ~r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 459 TRYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred hhHHHhhhhHHHHhhcCchhh
Confidence 999999998888877788543
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.071 Score=42.25 Aligned_cols=62 Identities=15% Similarity=0.138 Sum_probs=47.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhh
Q psy8160 209 RCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYS 288 (324)
Q Consensus 209 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al 288 (324)
......++.+.|.+.|.+++.+-|+....|+.+|....+.|+ ++. |.+.|++.+
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~------------------------~da--Aa~a~~~~L 56 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGE------------------------FDA--AAAAYEEVL 56 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhccc------------------------HHH--HHHHHHHHH
Confidence 345567899999999999999999988888888887777777 445 666666666
Q ss_pred hcCCChhh
Q psy8160 289 TSIASCKH 296 (324)
Q Consensus 289 ~~~p~~~~ 296 (324)
+++|.+..
T Consensus 57 ~ldp~D~~ 64 (287)
T COG4976 57 ELDPEDHG 64 (287)
T ss_pred cCCccccc
Confidence 66666543
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.83 E-value=2.3 Score=32.52 Aligned_cols=95 Identities=11% Similarity=0.075 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchh----hHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHH
Q psy8160 53 VHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTF----TKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFH 127 (324)
Q Consensus 53 ~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~----~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 127 (324)
+.++.|.+....|+-..|+..|..+- ..|.+... ...-+.++...|.|+.-..-.+..- .+....+..+.-.
T Consensus 96 A~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa---~d~n~mR~sArEA 172 (221)
T COG4649 96 ARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLA---GDGNPMRHSAREA 172 (221)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhcc---CCCChhHHHHHHH
Confidence 34445555555555555555555444 22222111 1112334444455544444332221 1111112234444
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHh
Q psy8160 128 IAHLHEVQRKYKTAKDSYEQLLK 150 (324)
Q Consensus 128 la~~~~~~~~~~~A~~~~~~al~ 150 (324)
||..-++.|++.+|.+.|.++..
T Consensus 173 LglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 173 LGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HhHHHHhccchHHHHHHHHHHHc
Confidence 45555555555555555555444
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.11 Score=28.58 Aligned_cols=30 Identities=20% Similarity=0.225 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEKS 231 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 231 (324)
+++..||.+....++|++|+.-|++++.+.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 467889999999999999999999998764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >KOG4814|consensus | Back alignment and domain information |
|---|
Probab=93.80 E-value=1.2 Score=40.96 Aligned_cols=79 Identities=11% Similarity=0.138 Sum_probs=68.7
Q ss_pred chhHHHHHHHHHHHhhhCCccH------HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHH
Q psy8160 180 SHRETLAIHCLQKSIEADPKSG------QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNRE 253 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~~~------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~ 253 (324)
..+|..++++|...+..-|.+. .....+..||....+.+.|.+.++.|-+.+|.++-....+-......+. -+
T Consensus 367 ~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~-Se 445 (872)
T KOG4814|consen 367 MEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDK-SE 445 (872)
T ss_pred HHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcc-hH
Confidence 4489999999999998766654 4567889999999999999999999999999999888888888888888 88
Q ss_pred HHHHHH
Q psy8160 254 DYHQAL 259 (324)
Q Consensus 254 ~A~~~~ 259 (324)
+|+.+.
T Consensus 446 ~AL~~~ 451 (872)
T KOG4814|consen 446 EALTCL 451 (872)
T ss_pred HHHHHH
Confidence 888877
|
|
| >PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex [] | Back alignment and domain information |
|---|
Probab=93.79 E-value=3.2 Score=37.12 Aligned_cols=166 Identities=13% Similarity=-0.029 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCch----hhHHHHHHHHHHHhhhhh-c------ccchhHHHHHHHHH
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHL----KADICRQLGWMYHCIDTL-G------EKSHRETLAIHCLQ 191 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~----~~~~~~~l~~~~~~~~~~-~------~~~~~~~~A~~~~~ 191 (324)
.....+|++.+..++|+.|...|+.+.... ..+. .+.+.-..|.+....... . +...-.+.|...|.
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df--~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~ 286 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDF--KNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYL 286 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHH--hhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHH
Confidence 356678999999999999999998887654 2110 022222222222221111 0 11224566666666
Q ss_pred HH----hhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc--C--CC---CHHHHHHhHHHH--hhcCCCHHHH---
Q psy8160 192 KS----IEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEK--S--EG---NADTWCSIGNKD--FSNNSNREDY--- 255 (324)
Q Consensus 192 ~a----l~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~--p~---~~~~~~~lg~~~--~~~~~~~~~A--- 255 (324)
++ ......-..+....+.++...+.+.+|...+-+.... + -. .+-.+-.+|.|| ..... ...-
T Consensus 287 ~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~-~~~~~~r 365 (414)
T PF12739_consen 287 KSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNR-PSPGLTR 365 (414)
T ss_pred hhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCC-CCccchh
Confidence 63 2222233356677788888899988877766666554 2 23 345667788888 44422 1111
Q ss_pred HHHHHHHHh-hHHHHHHcCCCCcchHHHHHHHhhhcCCC
Q psy8160 256 HQALNKYRD-LGDFLVINNIPTSNNNRQCYNSYSTSIAS 293 (324)
Q Consensus 256 ~~~~~~~~~-lg~~~~~~~~~~~~~A~~~~~~al~~~p~ 293 (324)
.+-+..|.- -|.-|...|+... |+.+|.+|+....+
T Consensus 366 ~RK~af~~vLAg~~~~~~~~~~~--a~rcy~~a~~vY~~ 402 (414)
T PF12739_consen 366 FRKYAFHMVLAGHRYSKAGQKKH--ALRCYKQALQVYEG 402 (414)
T ss_pred hHHHHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHHhCC
Confidence 222233433 3677999999999 99999999987654
|
Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ]. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.71 Score=41.40 Aligned_cols=28 Identities=18% Similarity=0.148 Sum_probs=13.7
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy8160 200 SGQSLYLLGRCFAAVGKVHDAFLAYRNS 227 (324)
Q Consensus 200 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a 227 (324)
++..|..||......|+++-|..+|+++
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 3444555555555555555555554443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG0529|consensus | Back alignment and domain information |
|---|
Probab=93.72 E-value=3.5 Score=35.98 Aligned_cols=134 Identities=12% Similarity=0.104 Sum_probs=97.1
Q ss_pred cHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhh--cHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhh
Q psy8160 99 EYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQR--KYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTL 176 (324)
Q Consensus 99 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~ 176 (324)
-.++-+.....++..+|... .+|.....++...+ ++..-+...+++++.+ |.+.+ +|...-.+.......
T Consensus 90 ~ld~eL~~~~~~L~~npksY----~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D--~RNfh--~W~YRRfV~~~~~~~ 161 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSY----GAWHHRKWVLQKNPHSDWNTELQLCEKALKQD--PRNFH--AWHYRRFVVEQAERS 161 (421)
T ss_pred hhHHHHHHHHHHHHhCchhH----HHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC--ccccc--chHHHHHHHHHHhcc
Confidence 45666777788888888876 78889988888775 4677888999999999 87766 555555555433222
Q ss_pred cccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHH------cCC------HHHHHHHHHHHHccCCCCHHHHHHhHH
Q psy8160 177 GEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAA------VGK------VHDAFLAYRNSVEKSEGNADTWCSIGN 243 (324)
Q Consensus 177 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~------~~~------~~~A~~~~~~al~~~p~~~~~~~~lg~ 243 (324)
++ ...+=+.+..+++..++.|..+|.....+... .|+ ...=++.-..|+-.+|++..+|+..-.
T Consensus 162 ~~---~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rW 237 (421)
T KOG0529|consen 162 RN---LEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRW 237 (421)
T ss_pred cc---cchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHH
Confidence 21 35667889999999999999999988766652 231 234566677888899999988876433
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.16 Score=28.00 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHh
Q psy8160 52 EVHLRLGLMFKVNNEYDSALKHLTLCL 78 (324)
Q Consensus 52 ~~~~~lg~~~~~~~~~~~A~~~~~~al 78 (324)
++|..||.+....++|++|+..|++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL 28 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKAL 28 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 466777777777777777777777655
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=93.63 E-value=1.4 Score=32.72 Aligned_cols=78 Identities=13% Similarity=0.057 Sum_probs=49.5
Q ss_pred HHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHh
Q psy8160 57 LGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQ 135 (324)
Q Consensus 57 lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~ 135 (324)
+...-...++.+++...+...- .-|........-|.++...|++.+|+..++.+....+..+ -..-.++.|+...
T Consensus 16 ~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p----~~kAL~A~CL~al 91 (153)
T TIGR02561 16 VLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPP----YGKALLALCLNAK 91 (153)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCch----HHHHHHHHHHHhc
Confidence 3333444667777777776555 6777777777777777777777777777776665544333 2333456666666
Q ss_pred hcH
Q psy8160 136 RKY 138 (324)
Q Consensus 136 ~~~ 138 (324)
||.
T Consensus 92 ~Dp 94 (153)
T TIGR02561 92 GDA 94 (153)
T ss_pred CCh
Confidence 654
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=93.58 E-value=1.2 Score=39.54 Aligned_cols=128 Identities=9% Similarity=0.066 Sum_probs=83.9
Q ss_pred HHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHH
Q psy8160 62 KVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKT 140 (324)
Q Consensus 62 ~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 140 (324)
...||.-.|-.....++ ..|..+....+.+.++...|+|+.|.....-+=....... ....-+-...+.+|++++
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~----~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTD----STLRCRLRSLHGLARWRE 375 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCc----hHHHHHHHhhhchhhHHH
Confidence 35688888888888888 8888888888889999999999999886654422211111 223333445567889999
Q ss_pred HHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHH
Q psy8160 141 AKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSL 204 (324)
Q Consensus 141 A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 204 (324)
|...-.-.+... -.. .++..-.+-...+ .+-++++..++++.+.++|.....|
T Consensus 376 a~s~a~~~l~~e--ie~--~ei~~iaa~sa~~-------l~~~d~~~~~wk~~~~~~~~~~~g~ 428 (831)
T PRK15180 376 ALSTAEMMLSNE--IED--EEVLTVAAGSADA-------LQLFDKSYHYWKRVLLLNPETQSGW 428 (831)
T ss_pred HHHHHHHHhccc--cCC--hhheeeecccHHH-------HhHHHHHHHHHHHHhccCChhcccc
Confidence 988877766543 222 1122222222211 4478889999999998887655433
|
|
| >KOG3783|consensus | Back alignment and domain information |
|---|
Probab=93.54 E-value=5.6 Score=36.03 Aligned_cols=223 Identities=14% Similarity=0.052 Sum_probs=130.1
Q ss_pred HHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q psy8160 70 ALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQL 148 (324)
Q Consensus 70 A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 148 (324)
..+.+.... .-|.++.+....+.++...|+.+.|+..++..+. +.-.....-.++.+|.++..+.+|..|-..+...
T Consensus 252 ~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L 329 (546)
T KOG3783|consen 252 CEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLL 329 (546)
T ss_pred HHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 333444444 5788888888899999999998888888887775 1111122346778899999999999999999988
Q ss_pred HhcCCCCCchhhHHHHHHHHHHHhhhhhcc-cchhHHHHHHHHHHH---hhh----CCccH-------------------
Q psy8160 149 LKEDDLPVHLKADICRQLGWMYHCIDTLGE-KSHRETLAIHCLQKS---IEA----DPKSG------------------- 201 (324)
Q Consensus 149 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~A~~~~~~a---l~~----~~~~~------------------- 201 (324)
.+.++ ..++.--+..|.|+.+....-. ..++-+.|-.+++.. +.. .|-+.
T Consensus 330 ~desd---WS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~ 406 (546)
T KOG3783|consen 330 RDESD---WSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASI 406 (546)
T ss_pred Hhhhh---hhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccc
Confidence 77652 1123233334445533111000 011223232222222 111 11111
Q ss_pred -H--HHHHHHHHHHHc--CCHHHHHHHHHHHHc---c-CCCCHH-HHHHhHHHHhhcCCCHHHHHHHH------------
Q psy8160 202 -Q--SLYLLGRCFAAV--GKVHDAFLAYRNSVE---K-SEGNAD-TWCSIGNKDFSNNSNREDYHQAL------------ 259 (324)
Q Consensus 202 -~--~~~~lg~~~~~~--~~~~~A~~~~~~al~---~-~p~~~~-~~~~lg~~~~~~~~~~~~A~~~~------------ 259 (324)
. .++.+...+..- ...++.. -++..+. . ++++.. -+..+|.++..+|+ ...|..+|
T Consensus 407 ~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~-~~~a~~~f~i~~~~e~~~~~ 484 (546)
T KOG3783|consen 407 LLASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGD-SEVAPKCFKIQVEKESKRTE 484 (546)
T ss_pred cccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhhcc
Confidence 1 123333333221 1122222 1122221 1 232222 34567999999999 99999998
Q ss_pred ------HHHHhhHHHHHHcCC-CCcchHHHHHHHhhhcCCChhhhhhchh
Q psy8160 260 ------NKYRDLGDFLVINNI-PTSNNNRQCYNSYSTSIASCKHINNNKD 302 (324)
Q Consensus 260 ------~~~~~lg~~~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~l~ 302 (324)
-+++.+|.+|...+. ..+ +..++.+|-+...+ -...+++.
T Consensus 485 d~w~~PfA~YElA~l~~~~~g~~~e--~~~~L~kAr~~~~d-Y~lenRLh 531 (546)
T KOG3783|consen 485 DLWAVPFALYELALLYWDLGGGLKE--ARALLLKAREYASD-YELENRLH 531 (546)
T ss_pred ccccccHHHHHHHHHHHhcccChHH--HHHHHHHHHhhccc-cchhhHHH
Confidence 688999999999998 889 99999999876543 33444443
|
|
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.26 Score=26.74 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHH--HHh-cCCC
Q psy8160 52 EVHLRLGLMFKVNNEYDSALKHLT--LCL-IDAS 82 (324)
Q Consensus 52 ~~~~~lg~~~~~~~~~~~A~~~~~--~al-~~~~ 82 (324)
+.++.+|..+..+|++++|++.|+ -+. .+|.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 357888889999999999999944 544 5553
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=93.45 E-value=1.2 Score=34.99 Aligned_cols=75 Identities=12% Similarity=0.168 Sum_probs=48.8
Q ss_pred hcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhh
Q psy8160 96 VNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCID 174 (324)
Q Consensus 96 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~ 174 (324)
.+-.-++|...|-++ ........+++.+.+|..|. ..+.++++..+.++++.....+.+.++++..++.+++...
T Consensus 118 sr~~d~~A~~~fL~~---E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~ 192 (203)
T PF11207_consen 118 SRFGDQEALRRFLQL---EGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLK 192 (203)
T ss_pred hccCcHHHHHHHHHH---cCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 333345555544333 33333445688888887765 6678889999999888764332455778888888886644
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.38 E-value=5.4 Score=35.41 Aligned_cols=70 Identities=17% Similarity=0.179 Sum_probs=51.4
Q ss_pred HHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHH
Q psy8160 36 TFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCL 111 (324)
Q Consensus 36 ~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 111 (324)
.|++++.--| ..+++|+.....+...+|-+.|+...++.+ -.|+ ....++..+....+-++...+|+++.
T Consensus 290 ~~~q~~~y~~---~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~ 360 (660)
T COG5107 290 IHNQILDYFY---YAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCT 360 (660)
T ss_pred HHHHHHHHhh---hhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHH
Confidence 4556665543 466788888777888888888988888877 5555 55667888888888888777777775
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.23 E-value=4.3 Score=33.76 Aligned_cols=54 Identities=11% Similarity=-0.043 Sum_probs=30.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcc------CCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 205 YLLGRCFAAVGKVHDAFLAYRNSVEK------SEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 205 ~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
+.+...+...|+|.+|+....-.+.. .|.-.+.+..-..+|....+ ..++...+
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irn-v~KskaSL 188 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRN-VSKSKASL 188 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHh-hhhhhhHH
Confidence 34566777778888877776555431 23334455555556665555 55554444
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.15 Score=25.26 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYR 225 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~ 225 (324)
.+.+.+|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356677788888888888777664
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG2422|consensus | Back alignment and domain information |
|---|
Probab=93.03 E-value=2.6 Score=38.42 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q psy8160 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLL 149 (324)
Q Consensus 122 ~~~~~~la~~~~~~~~~~~A~~~~~~al 149 (324)
.+.+.+++.+...+|+.+.|.+..++++
T Consensus 284 vdsLLqva~~~r~qgD~e~aadLieR~L 311 (665)
T KOG2422|consen 284 VDSLLQVADIFRFQGDREMAADLIERGL 311 (665)
T ss_pred hhHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 4788899999999999988888777765
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.95 Score=41.13 Aligned_cols=114 Identities=14% Similarity=0.079 Sum_probs=80.7
Q ss_pred HHHHHHHHhhhCCccHHHHHH--HHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH----
Q psy8160 186 AIHCLQKSIEADPKSGQSLYL--LGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL---- 259 (324)
Q Consensus 186 A~~~~~~al~~~~~~~~~~~~--lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~---- 259 (324)
++..+...+..+|.++..+.. +...+...++...+......++..+|++..+..++|......|. ...++..+
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~-~~~~~~~~~~~a 128 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGL-QFLALADISEIA 128 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhh-HHHHHHHHHHHH
Confidence 555555556677777765332 46666667777778888888888888888888888887777776 55554443
Q ss_pred --------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchh
Q psy8160 260 --------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKD 302 (324)
Q Consensus 260 --------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 302 (324)
..++.+|......++..+ +....+++.+..|.++++...+.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~l~~~~d~~p~~~~~~~~~~ 183 (620)
T COG3914 129 EWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAE--AELALERAVDLLPKYPRVLGALM 183 (620)
T ss_pred HhcCcchHHHHhhHHHHHHHHHHHHHhccHHH--HHHHHHHHHHhhhhhhhhHhHHH
Confidence 222336777888888888 99999999999999877655543
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=92.99 E-value=6.8 Score=35.42 Aligned_cols=183 Identities=13% Similarity=0.039 Sum_probs=114.5
Q ss_pred HHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHh
Q psy8160 35 KTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLID 113 (324)
Q Consensus 35 ~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 113 (324)
....+++.... +..+++.++.||... ..++-...+++.+ .+-++......++..|.. ++-..+..+|.+++..
T Consensus 87 h~c~~~l~~~e----~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yr 160 (711)
T COG1747 87 HLCTRVLEYGE----SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYR 160 (711)
T ss_pred HHHHHHHHhcc----hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHH
Confidence 34455665553 345788999999887 6677778888888 888888888889988887 8899999999999866
Q ss_pred cCCCcc--cHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHH
Q psy8160 114 ASPCTF--TKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQ 191 (324)
Q Consensus 114 ~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~ 191 (324)
.-+... .--++|..+-. .--.+.+.-+....++-... .. ....+.+. .++-.++. ..++.+|++.+.
T Consensus 161 fI~~~q~~~i~evWeKL~~--~i~dD~D~fl~l~~kiqt~l--g~-~~~~Vl~q--dv~~~Ys~----~eN~~eai~Ilk 229 (711)
T COG1747 161 FIPRRQNAAIKEVWEKLPE--LIGDDKDFFLRLQKKIQTKL--GE-GRGSVLMQ--DVYKKYSE----NENWTEAIRILK 229 (711)
T ss_pred hcchhhhhhHHHHHHHHHH--hccccHHHHHHHHHHHHHhh--cc-chHHHHHH--HHHHHhcc----ccCHHHHHHHHH
Confidence 433221 11234444321 11233444444443333222 11 11223333 22222221 348999999999
Q ss_pred HHhhhCCccHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHccCCCC
Q psy8160 192 KSIEADPKSGQSLYLLGRCFAA--------------------VGKVHDAFLAYRNSVEKSEGN 234 (324)
Q Consensus 192 ~al~~~~~~~~~~~~lg~~~~~--------------------~~~~~~A~~~~~~al~~~p~~ 234 (324)
..++.+..+..+.-.+-.-+.. -.++..++.-|++.+..+..+
T Consensus 230 ~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn 292 (711)
T COG1747 230 HILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN 292 (711)
T ss_pred HHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
Confidence 9999988776554444333332 467888999999998888776
|
|
| >KOG3807|consensus | Back alignment and domain information |
|---|
Probab=92.93 E-value=5.2 Score=33.98 Aligned_cols=161 Identities=9% Similarity=-0.051 Sum_probs=88.2
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCc-------
Q psy8160 127 HIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPK------- 199 (324)
Q Consensus 127 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~------- 199 (324)
.+-....+..+..+-++.-..+++++ |.. +.++..++.--.. -..+|.+.++++++....
T Consensus 189 eIMQ~AWRERnp~~RI~~A~~ALeIN--~eC--A~AyvLLAEEEa~---------Ti~~AE~l~k~ALka~e~~yr~sqq 255 (556)
T KOG3807|consen 189 EIMQKAWRERNPPARIKAAYQALEIN--NEC--ATAYVLLAEEEAT---------TIVDAERLFKQALKAGETIYRQSQQ 255 (556)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHhcC--chh--hhHHHhhhhhhhh---------hHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 33444456667777777888888888 665 4455554432211 344555666655543111
Q ss_pred ----------------cH--HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH--HHHHHhHHHHhhcCCCHH------
Q psy8160 200 ----------------SG--QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNA--DTWCSIGNKDFSNNSNRE------ 253 (324)
Q Consensus 200 ----------------~~--~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~~~~~~------ 253 (324)
+. .+-..|+.|..++|+..+|++.++...+..|-.. ..+-++-..+....- |.
T Consensus 256 ~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QA-YADvqavL 334 (556)
T KOG3807|consen 256 CQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQA-YADVQAVL 334 (556)
T ss_pred HhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 11 1234689999999999999999999888777432 122333333333333 33
Q ss_pred ----------HHHHHH-HHHHhh--------HHHHHHcCC-CCcchHHHHHHHhhhcCCChhhhhhch
Q psy8160 254 ----------DYHQAL-NKYRDL--------GDFLVINNI-PTSNNNRQCYNSYSTSIASCKHINNNK 301 (324)
Q Consensus 254 ----------~A~~~~-~~~~~l--------g~~~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~l 301 (324)
.|--+| .++... ...-.+.|- -.+.+|++...+|++.+|.-|...-.+
T Consensus 335 akYDdislPkSA~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYLLE~ 402 (556)
T KOG3807|consen 335 AKYDDISLPKSAAICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLLEM 402 (556)
T ss_pred HhhccccCcchHHHHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHHHHH
Confidence 333333 111110 011111221 111248899999999999877654433
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.18 Score=25.01 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhccHHHHHHHHH
Q psy8160 53 VHLRLGLMFKVNNEYDSALKHLT 75 (324)
Q Consensus 53 ~~~~lg~~~~~~~~~~~A~~~~~ 75 (324)
+++.+|..+..+|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 56677777777777777777664
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=92.84 E-value=6.6 Score=34.90 Aligned_cols=46 Identities=17% Similarity=0.179 Sum_probs=30.7
Q ss_pred chhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy8160 180 SHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRN 226 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 226 (324)
.|++.++..+-.-..+.+| ++.++..+|.|.....+|++|+.++..
T Consensus 475 qgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 475 QGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred cccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 3466666666666666666 666677777777777777777766644
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.54 Score=42.14 Aligned_cols=77 Identities=9% Similarity=-0.071 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHc---CCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHH
Q psy8160 182 RETLAIHCLQKSIEADPKSGQSLYLLGRCFAAV---GKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQA 258 (324)
Q Consensus 182 ~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~ 258 (324)
....|+..|.+++...|.....+.+.+.+++.. |+--.|+.-+..|++++|....+|+.|+.++..++. +.+|+++
T Consensus 389 ~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r-~~eal~~ 467 (758)
T KOG1310|consen 389 IVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTR-YLEALSC 467 (758)
T ss_pred HHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhh-HHHhhhh
Confidence 566799999999999999999999998888876 455568888899999999999999999999999999 9999887
Q ss_pred H
Q psy8160 259 L 259 (324)
Q Consensus 259 ~ 259 (324)
.
T Consensus 468 ~ 468 (758)
T KOG1310|consen 468 H 468 (758)
T ss_pred H
Confidence 6
|
|
| >KOG0890|consensus | Back alignment and domain information |
|---|
Probab=92.48 E-value=9.4 Score=40.98 Aligned_cols=35 Identities=3% Similarity=-0.140 Sum_probs=25.6
Q ss_pred HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhh
Q psy8160 260 NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKH 296 (324)
Q Consensus 260 ~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 296 (324)
++|...+.+-+..|+++. |-.+.-+|.+..+....
T Consensus 1671 e~wLqsAriaR~aG~~q~--A~nall~A~e~r~~~i~ 1705 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQR--AQNALLNAKESRLPEIV 1705 (2382)
T ss_pred HHHHHHHHHHHhcccHHH--HHHHHHhhhhcccchHH
Confidence 677777777777888888 87777777776655443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.46 E-value=2.4 Score=35.33 Aligned_cols=93 Identities=11% Similarity=0.066 Sum_probs=71.1
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcch
Q psy8160 200 SGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNN 279 (324)
Q Consensus 200 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~ 279 (324)
...++..++..+...|+++.++..+++.+..+|.+-..|..+-..|...|. ...|+..|.-...+ .-...|---.++
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~-~~~ai~~y~~l~~~--~~edlgi~P~~~ 228 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGR-QSAAIRAYRQLKKT--LAEELGIDPAPE 228 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCC-chHHHHHHHHHHHH--hhhhcCCCccHH
Confidence 346778889999999999999999999999999999999999999999999 99999988222222 223334211223
Q ss_pred HHHHHHHhhhcCCChh
Q psy8160 280 NRQCYNSYSTSIASCK 295 (324)
Q Consensus 280 A~~~~~~al~~~p~~~ 295 (324)
+...|.+++...|.+.
T Consensus 229 ~~~~y~~~~~~~~~~~ 244 (280)
T COG3629 229 LRALYEEILRQDPLDN 244 (280)
T ss_pred HHHHHHHHhccccccc
Confidence 7778888877666543
|
|
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=92.14 E-value=0.67 Score=40.35 Aligned_cols=55 Identities=9% Similarity=-0.050 Sum_probs=51.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 204 LYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 204 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
--.|..||..+++.+-|+....+.+..+|.+...+...+.|+..+.+ |.+|-+.+
T Consensus 231 etklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeR-y~eAarSa 285 (569)
T PF15015_consen 231 ETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLER-YSEAARSA 285 (569)
T ss_pred HHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHH-HHHHHHHH
Confidence 34688999999999999999999999999999999999999999999 99998776
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=92.08 E-value=0.92 Score=29.49 Aligned_cols=50 Identities=14% Similarity=0.212 Sum_probs=27.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHH---HHhhcCCCHHHHHH
Q psy8160 207 LGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN---KDFSNNSNREDYHQ 257 (324)
Q Consensus 207 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~---~~~~~~~~~~~A~~ 257 (324)
-|.-++...+.++|+..++++++..++.++.|..+|- +|...|+ |.++++
T Consensus 12 ~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gk-yr~~L~ 64 (80)
T PF10579_consen 12 KGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGK-YREMLA 64 (80)
T ss_pred HHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 3444445566666666666666666666555544443 3445555 555544
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=91.99 E-value=0.51 Score=32.19 Aligned_cols=55 Identities=16% Similarity=0.210 Sum_probs=42.0
Q ss_pred chhHHHHHHHHHHHhhhCCc---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q psy8160 180 SHRETLAIHCLQKSIEADPK---------SGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN 234 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~---------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 234 (324)
.+++..|++.+.+....... ...++..+|.++...|++++|+..+++++.+....
T Consensus 11 ~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 11 SGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred cCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 44888887777777654221 13567889999999999999999999999876543
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=91.92 E-value=1.5 Score=39.04 Aligned_cols=128 Identities=10% Similarity=0.033 Sum_probs=87.0
Q ss_pred cccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhh
Q psy8160 97 NNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTL 176 (324)
Q Consensus 97 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~ 176 (324)
-|+...|-.-...++...|..+ ......+.+...+|+|+.|...+..+-..-...+. +...+-+.. .
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p----~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~----~~~~~~r~~-----~ 368 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDP----VLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDS----TLRCRLRSL-----H 368 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCc----hhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCch----HHHHHHHhh-----h
Confidence 3677777777777777766665 44555688899999999998877654333211111 222222222 2
Q ss_pred cccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHH
Q psy8160 177 GEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWC 239 (324)
Q Consensus 177 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 239 (324)
| .+++++|...-.-.+...-.++++..--+-.....|-+++|...+.+.+.++|.....|.
T Consensus 369 ~--l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v 429 (831)
T PRK15180 369 G--LARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWV 429 (831)
T ss_pred c--hhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccce
Confidence 2 559999999988888777777777665556666778899999999999999986644443
|
|
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.80 E-value=1.4 Score=36.33 Aligned_cols=61 Identities=16% Similarity=0.158 Sum_probs=52.6
Q ss_pred chhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHH
Q psy8160 180 SHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCS 240 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 240 (324)
.++++.|..+.++.+.++|.++.-+.-.|.+|.+.|.+.-|+..++..++..|+.+.+-.-
T Consensus 194 e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~i 254 (269)
T COG2912 194 ELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMI 254 (269)
T ss_pred hhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHH
Confidence 3378889999999999999999888889999999999999999999989999988776443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.62 E-value=0.96 Score=37.61 Aligned_cols=57 Identities=14% Similarity=0.089 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHH
Q psy8160 54 HLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLC 110 (324)
Q Consensus 54 ~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 110 (324)
+..++..+...++++.+++.+++.+ .+|.+...+..+-..|...|+...|+..|++.
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l 213 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQL 213 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 3444444555555555555555555 55555555555555555555555555544444
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=91.18 E-value=0.6 Score=24.04 Aligned_cols=27 Identities=19% Similarity=0.357 Sum_probs=15.0
Q ss_pred CHHHHHHHHHHHHccCCCCHHHHHHhH
Q psy8160 216 KVHDAFLAYRNSVEKSEGNADTWCSIG 242 (324)
Q Consensus 216 ~~~~A~~~~~~al~~~p~~~~~~~~lg 242 (324)
+.+.|...|++++...|.++..|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 445555555555555555555555544
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.06 E-value=6.7 Score=35.98 Aligned_cols=122 Identities=10% Similarity=0.031 Sum_probs=84.6
Q ss_pred HHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHH-H
Q psy8160 33 AIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTL-C 110 (324)
Q Consensus 33 A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~-~ 110 (324)
++..+...+.++|..+.-.-..+ +...+...++...+.-.+..++ .+|.++.....++......|....+...+.. +
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a 128 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAF-LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIA 128 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHH-HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 44555555555655332211222 5667778888888899999999 9999999999998888877776666665555 5
Q ss_pred HHhcCCCccc--HHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCc
Q psy8160 111 LIDASPCTFT--KLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVH 157 (324)
Q Consensus 111 l~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 157 (324)
....|.+... ....+++++.....+++..++.....++.... |..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~--p~~ 175 (620)
T COG3914 129 EWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLL--PKY 175 (620)
T ss_pred HhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--hhh
Confidence 5555555421 12234457888888899999988888888887 665
|
|
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=90.84 E-value=7.9 Score=34.08 Aligned_cols=53 Identities=15% Similarity=0.029 Sum_probs=26.1
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHH
Q psy8160 90 EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYE 146 (324)
Q Consensus 90 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 146 (324)
+..+|...++.+-|+.+--+.+..+|... .-+..-|-|+..+.+|.+|-..+.
T Consensus 234 lv~CYL~~rkpdlALnh~hrsI~lnP~~f----rnHLrqAavfR~LeRy~eAarSam 286 (569)
T PF15015_consen 234 LVTCYLRMRKPDLALNHSHRSINLNPSYF----RNHLRQAAVFRRLERYSEAARSAM 286 (569)
T ss_pred HHHhhhhcCCCchHHHHHhhhhhcCcchh----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555554443 233334455555555555544433
|
|
| >KOG2581|consensus | Back alignment and domain information |
|---|
Probab=90.65 E-value=11 Score=33.02 Aligned_cols=136 Identities=20% Similarity=0.141 Sum_probs=87.5
Q ss_pred HHHhcccHHHHHHHHHHHHHhcCCCc-----ccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCC--CchhhHHHHH
Q psy8160 93 MFKVNNEYDSALKHLTLCLIDASPCT-----FTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLP--VHLKADICRQ 165 (324)
Q Consensus 93 ~~~~~~~~~~A~~~~~~~l~~~~~~~-----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~ 165 (324)
.+..+.++++|.++-+..+....... ...+.+|+.+...|...|+...-...+...+...... ....+.....
T Consensus 135 fl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~ 214 (493)
T KOG2581|consen 135 FLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINL 214 (493)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHH
Confidence 33456788888887777654311111 1224567888888888888666555555544432212 1122445555
Q ss_pred HHHHHHhhhhhcccchhHHHHHHHHHHHhh--hCC--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q psy8160 166 LGWMYHCIDTLGEKSHRETLAIHCLQKSIE--ADP--KSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNA 235 (324)
Q Consensus 166 l~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 235 (324)
+-+.|.. .+.+++|.....++.- ... .-+..+|.+|.+..-+++|..|.+++..|+...|.+.
T Consensus 215 LLr~yL~-------n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 215 LLRNYLH-------NKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHhh-------hHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 5555533 4478888888777641 111 2236678899999999999999999999999999863
|
|
| >KOG4279|consensus | Back alignment and domain information |
|---|
Probab=90.24 E-value=1.5 Score=41.25 Aligned_cols=161 Identities=12% Similarity=0.087 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchh----hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhC
Q psy8160 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK----ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEAD 197 (324)
Q Consensus 122 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 197 (324)
+++..++-..|....+|+.-+...+.+-.+ |+... ..+.+..+.+..+.+. -|+-++|+...-.+++..
T Consensus 201 ~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr----~GDRakAL~~~l~lve~e 273 (1226)
T KOG4279|consen 201 PDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNR----PGDRAKALNTVLPLVEKE 273 (1226)
T ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCC----CccHHHHHHHHHHHHHhc
Confidence 466667777788888888777766554433 32211 1122233333333333 448888999988888765
Q ss_pred -CccHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCC----------------
Q psy8160 198 -PKSGQSLYLLGRCFAAV---------GKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSN---------------- 251 (324)
Q Consensus 198 -~~~~~~~~~lg~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~---------------- 251 (324)
|..++.++.-|++|-.+ +..+.|++||++|.+..|... .-.+++.++...|+.
T Consensus 274 g~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~-sGIN~atLL~aaG~~Fens~Elq~IgmkLn~ 352 (1226)
T KOG4279|consen 274 GPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEY-SGINLATLLRAAGEHFENSLELQQIGMKLNS 352 (1226)
T ss_pred CCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhh-ccccHHHHHHHhhhhccchHHHHHHHHHHHH
Confidence 56678888888888765 556789999999999998642 112333333333331
Q ss_pred -------HHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCC
Q psy8160 252 -------REDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIAS 293 (324)
Q Consensus 252 -------~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~ 293 (324)
.++-..++++-+.+|.. .-.+++.+ |+..-++..++.|-
T Consensus 353 LlgrKG~leklq~YWdV~~y~~as-VLAnd~~k--aiqAae~mfKLk~P 398 (1226)
T KOG4279|consen 353 LLGRKGALEKLQEYWDVATYFEAS-VLANDYQK--AIQAAEMMFKLKPP 398 (1226)
T ss_pred HhhccchHHHHHHHHhHHHhhhhh-hhccCHHH--HHHHHHHHhccCCc
Confidence 32222222222222211 11357778 88888888887764
|
|
| >KOG1839|consensus | Back alignment and domain information |
|---|
Probab=89.82 E-value=7.7 Score=39.03 Aligned_cols=123 Identities=15% Similarity=0.017 Sum_probs=87.1
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-c--------CCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHh----cCC
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-I--------DASPCTFTKLEGLMFKVNNEYDSALKHLTLCLID----ASP 116 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~----~~~ 116 (324)
....+..++.++...+++++|+..-+++. + .|+....+..++......+....|+..+.++... .++
T Consensus 972 ~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge 1051 (1236)
T KOG1839|consen 972 VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGE 1051 (1236)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCC
Confidence 45678999999999999999999888876 3 2444555666787777888888888888887543 122
Q ss_pred CcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC---CCchh-hHHHHHHHHHHHh
Q psy8160 117 CTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDL---PVHLK-ADICRQLGWMYHC 172 (324)
Q Consensus 117 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~-~~~~~~l~~~~~~ 172 (324)
.......+..+++.++...++++.|+.+.+.|++.... |...+ +..+..++.++-.
T Consensus 1052 ~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s 1111 (1236)
T KOG1839|consen 1052 DHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFES 1111 (1236)
T ss_pred CCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhh
Confidence 22233456788899999999999999999999876421 22222 3455555555533
|
|
| >KOG2581|consensus | Back alignment and domain information |
|---|
Probab=89.33 E-value=14 Score=32.36 Aligned_cols=134 Identities=13% Similarity=0.032 Sum_probs=83.6
Q ss_pred HHHhccHHHHHHHHHHHh--cCCCCch--------hhHHHHHHHHhcccHHHHHHHHHHHHHhcCC--CcccHHHHHHHH
Q psy8160 61 FKVNNEYDSALKHLTLCL--IDASPCT--------FTKLEGLMFKVNNEYDSALKHLTLCLIDASP--CTFTKLEVRFHI 128 (324)
Q Consensus 61 ~~~~~~~~~A~~~~~~al--~~~~~~~--------~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~~~~~l 128 (324)
.+.+.++++|.++-+..+ +...+.+ .+..+..++...|+...-...+...+....- +..+++.+...+
T Consensus 136 l~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~L 215 (493)
T KOG2581|consen 136 LIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLL 215 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHH
Confidence 345688999988887766 3222222 2333566666677765555555544433222 222445566667
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH
Q psy8160 129 AHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG 201 (324)
Q Consensus 129 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 201 (324)
-.+|...+.|+.|-....++.--....++..+.-++.+|.+..- ..+|..|.+++..|+...|.+.
T Consensus 216 Lr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkai-------qldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 216 LRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAI-------QLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHh-------hcchhHHHHHHHHHHHhCcchh
Confidence 77888888888887776655421111333346666677777644 4489999999999999999754
|
|
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.32 E-value=1.9 Score=35.54 Aligned_cols=68 Identities=6% Similarity=-0.165 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHH
Q psy8160 203 SLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQ 282 (324)
Q Consensus 203 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~ 282 (324)
..-++=..+...++++.|..+.++.+.++|.++.-+.-.|.+|.+.|. +.- |+.
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c------------------------~~v--Al~ 236 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGC------------------------YHV--ALE 236 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCC------------------------chh--hHH
Confidence 344566778888999999999999999999999999999999998888 444 666
Q ss_pred HHHHhhhcCCChhh
Q psy8160 283 CYNSYSTSIASCKH 296 (324)
Q Consensus 283 ~~~~al~~~p~~~~ 296 (324)
.++..++.-|+++.
T Consensus 237 dl~~~~~~~P~~~~ 250 (269)
T COG2912 237 DLSYFVEHCPDDPI 250 (269)
T ss_pred HHHHHHHhCCCchH
Confidence 66666666666654
|
|
| >KOG0687|consensus | Back alignment and domain information |
|---|
Probab=89.10 E-value=13 Score=31.59 Aligned_cols=110 Identities=13% Similarity=0.027 Sum_probs=69.8
Q ss_pred cHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCch-h-hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhC
Q psy8160 120 TKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHL-K-ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEAD 197 (324)
Q Consensus 120 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~-~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 197 (324)
...+++.+.|..|.+.|+.+.|.+.+++.....-.-... . .-...++|..|......+ ...+.|-..+++.-.-+
T Consensus 102 ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~---~~iekak~liE~GgDWe 178 (393)
T KOG0687|consen 102 EVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVT---ESIEKAKSLIEEGGDWE 178 (393)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHH---HHHHHHHHHHHhCCChh
Confidence 445789999999999999999999998887654111110 0 225566777774432222 24455555555543333
Q ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q psy8160 198 PKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEG 233 (324)
Q Consensus 198 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 233 (324)
..| ..-..-|.-.+...++.+|-..|-.++.....
T Consensus 179 RrN-RlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 179 RRN-RLKVYQGLYCMSVRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred hhh-hHHHHHHHHHHHHHhHHHHHHHHHHHcccccc
Confidence 222 23344577777888999999999888765543
|
|
| >KOG1463|consensus | Back alignment and domain information |
|---|
Probab=88.64 E-value=15 Score=31.53 Aligned_cols=162 Identities=15% Similarity=0.090 Sum_probs=105.7
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC---CCCCchhhHHHH
Q psy8160 90 EGLMFKVNNEYDSALKHLTLCLIDA--SPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKED---DLPVHLKADICR 164 (324)
Q Consensus 90 la~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~~~~ 164 (324)
+..+|...++|.+|+......+..- -++...-.+++..-...|+...+..+|...+..+-... =.|+...+..-.
T Consensus 134 li~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDL 213 (411)
T KOG1463|consen 134 LIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDL 213 (411)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHH
Confidence 5778888999999999888776541 12222223556666788899999999888887764321 024444454545
Q ss_pred HHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCC---ccHH---HHHHHHHHHHHcCCHHH--HHHHHHHHHccCCCCHH
Q psy8160 165 QLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADP---KSGQ---SLYLLGRCFAAVGKVHD--AFLAYRNSVEKSEGNAD 236 (324)
Q Consensus 165 ~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~---~~~~---~~~~lg~~~~~~~~~~~--A~~~~~~al~~~p~~~~ 236 (324)
.-|-++.. ..+|.-|..+|-++++-.. .+.. ++-.+-.|-...+..++ ++-.-..+++......+
T Consensus 214 qSGIlha~-------ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~ 286 (411)
T KOG1463|consen 214 QSGILHAA-------EKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDID 286 (411)
T ss_pred hccceeec-------ccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchH
Confidence 55555533 2389999999999987532 1222 33344445555566554 55555667777777788
Q ss_pred HHHHhHHHHhh--cCCCHHHHHHHH
Q psy8160 237 TWCSIGNKDFS--NNSNREDYHQAL 259 (324)
Q Consensus 237 ~~~~lg~~~~~--~~~~~~~A~~~~ 259 (324)
+...++..+.. +.+ |+.|+..|
T Consensus 287 AmkavAeA~~nRSLkd-F~~AL~~y 310 (411)
T KOG1463|consen 287 AMKAVAEAFGNRSLKD-FEKALADY 310 (411)
T ss_pred HHHHHHHHhcCCcHHH-HHHHHHHh
Confidence 88888888754 457 88898888
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=88.43 E-value=1.4 Score=25.11 Aligned_cols=27 Identities=15% Similarity=0.240 Sum_probs=19.1
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHhcC
Q psy8160 126 FHIAHLHEVQRKYKTAKDSYEQLLKED 152 (324)
Q Consensus 126 ~~la~~~~~~~~~~~A~~~~~~al~~~ 152 (324)
+.+|..|...|+.+.|.+.+++++...
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 456777777777777777777777543
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=88.22 E-value=5.4 Score=26.04 Aligned_cols=59 Identities=15% Similarity=0.153 Sum_probs=40.9
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhh
Q psy8160 129 AHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIE 195 (324)
Q Consensus 129 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 195 (324)
|.-+...++..+|+..+++++... ++. ..-+..+|++.......| ++.+.+.+-..-++
T Consensus 13 GlkLY~~~~~~~Al~~W~~aL~k~--~~~--~~rf~~lG~l~qA~~e~G----kyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 13 GLKLYHQNETQQALQKWRKALEKI--TDR--EDRFRVLGYLIQAHMEWG----KYREMLAFALQQLE 71 (80)
T ss_pred HHHHhccchHHHHHHHHHHHHhhc--CCh--HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 444557788899999999999877 554 337777777776555555 77777777655443
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] | Back alignment and domain information |
|---|
Probab=88.01 E-value=1.6 Score=38.49 Aligned_cols=60 Identities=17% Similarity=0.122 Sum_probs=44.3
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhcCCC-----cccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHh
Q psy8160 90 EGLMFKVNNEYDSALKHLTLCLIDASPC-----TFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLK 150 (324)
Q Consensus 90 la~~~~~~~~~~~A~~~~~~~l~~~~~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 150 (324)
+.++....|||..|++..+.. +.+... +.....+++.+|.+|..+++|..|+..|..++.
T Consensus 128 LlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888889999999976654 111111 112346789999999999999999999998864
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=87.94 E-value=14 Score=30.61 Aligned_cols=141 Identities=12% Similarity=0.049 Sum_probs=68.0
Q ss_pred cchHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHH---HHHHHHhcCCCcccHHHHH
Q psy8160 49 RANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKH---LTLCLIDASPCTFTKLEVR 125 (324)
Q Consensus 49 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~---~~~~l~~~~~~~~~~~~~~ 125 (324)
..++.|..+|..+++.+++.+|..+|- .|+..++... .........+.. .+.+
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl---------------------~~~~~~~~~~~~ll~~~~~~~~~~e---~dlf 143 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFL---------------------LGTDPSAFAYVMLLEEWSTKGYPSE---ADLF 143 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHH---------------------TS-HHHHHHHHHHHHHHHHHTSS-----HHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHH---------------------hcCChhHHHHHHHHHHHHHhcCCcc---hhHH
Confidence 356789999999999999999998886 2222222221 111111222211 1333
Q ss_pred HHH-HHHHHHhhcHHHHHHHHHHHHhc----CCCCCc-------hhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHH
Q psy8160 126 FHI-AHLHEVQRKYKTAKDSYEQLLKE----DDLPVH-------LKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKS 193 (324)
Q Consensus 126 ~~l-a~~~~~~~~~~~A~~~~~~al~~----~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a 193 (324)
... -..|...++...|...+..-++. . |.. .....+.+..++....-..+ ....+..-.+.|+..
T Consensus 144 i~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~--p~~~~~~~~~~~~~PllnF~~lLl~t~e~~-~~~~F~~L~~~Y~~~ 220 (260)
T PF04190_consen 144 IARAVLQYLCLGNLRDANELFDTFTSKLIESH--PKLENSDIEYPPSYPLLNFLQLLLLTCERD-NLPLFKKLCEKYKPS 220 (260)
T ss_dssp HHHHHHHHHHTTBHHHHHHHHHHHHHHHHHH-----EEEEEEEEESS-HHHHHHHHHHHHHHHT--HHHHHHHHHHTHH-
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhccC--cchhccccCCCCCCchHHHHHHHHHHHhcC-cHHHHHHHHHHhCcc
Confidence 333 34456678888888776665544 2 210 00113334443332211111 122344455556666
Q ss_pred hhhCCccHHHHHHHHHHHHHcCC
Q psy8160 194 IEADPKSGQSLYLLGRCFAAVGK 216 (324)
Q Consensus 194 l~~~~~~~~~~~~lg~~~~~~~~ 216 (324)
++.+|.-...+-.+|..|+....
T Consensus 221 L~rd~~~~~~L~~IG~~yFgi~~ 243 (260)
T PF04190_consen 221 LKRDPSFKEYLDKIGQLYFGIQP 243 (260)
T ss_dssp --HHHHTHHHHHHHHHHHH---S
T ss_pred ccccHHHHHHHHHHHHHHCCCCC
Confidence 66666667778888888887553
|
; PDB: 3LKU_E 2WPV_G. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.80 E-value=2.3 Score=35.30 Aligned_cols=55 Identities=9% Similarity=0.004 Sum_probs=49.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 204 LYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 204 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
+...+..|...|.+.+|+...++++..+|-+...|..+-.++...|+ --.|++.|
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD-~is~~khy 336 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGD-EISAIKHY 336 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhcc-chhhhhHH
Confidence 34457788999999999999999999999999999999999999999 88888777
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=87.65 E-value=1.4 Score=25.09 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=23.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHc
Q psy8160 204 LYLLGRCFAAVGKVHDAFLAYRNSVE 229 (324)
Q Consensus 204 ~~~lg~~~~~~~~~~~A~~~~~~al~ 229 (324)
.+.++..|..+|+.+.|...++.++.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 36789999999999999999999985
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.62 E-value=2.2 Score=35.47 Aligned_cols=54 Identities=15% Similarity=0.029 Sum_probs=33.1
Q ss_pred HHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHH
Q psy8160 57 LGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLC 110 (324)
Q Consensus 57 lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 110 (324)
.+..|...|.+.+|+++.++++ .||-+...+..+-.++...||--++.++|++.
T Consensus 285 va~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3445556666666666666666 66666666666666666666666666655544
|
|
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=87.39 E-value=2.4 Score=35.32 Aligned_cols=43 Identities=14% Similarity=0.118 Sum_probs=28.4
Q ss_pred HHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh
Q psy8160 33 AIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL 78 (324)
Q Consensus 33 A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 78 (324)
|..+|.+|..+.|+. ...|..||.++...|+.=.|+=+|-+++
T Consensus 1 A~~~Y~~A~~l~P~~---G~p~nQLAvl~~~~~~~l~avy~y~Rsl 43 (278)
T PF10373_consen 1 AERYYRKAIRLLPSN---GNPYNQLAVLASYQGDDLDAVYYYIRSL 43 (278)
T ss_dssp HHHHHHHHHHH-TTB---SHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCC---CCcccchhhhhccccchHHHHHHHHHHH
Confidence 566777777777653 3457777777777777777777777666
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=86.52 E-value=6 Score=32.53 Aligned_cols=60 Identities=15% Similarity=0.037 Sum_probs=38.1
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHhcCCCcc--cHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q psy8160 89 LEGLMFKVNNEYDSALKHLTLCLIDASPCTF--TKLEVRFHIAHLHEVQRKYKTAKDSYEQL 148 (324)
Q Consensus 89 ~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a 148 (324)
.+|..|...|+++.|++.|+.+...-..... ...++...+..|....|+.+..+.+.-++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3677777788888888888877544222222 22356666777777777777666554443
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=85.98 E-value=1.9 Score=22.03 Aligned_cols=29 Identities=17% Similarity=0.092 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHhhhCCccHHHHHHHHHH
Q psy8160 182 RETLAIHCLQKSIEADPKSGQSLYLLGRC 210 (324)
Q Consensus 182 ~~~~A~~~~~~al~~~~~~~~~~~~lg~~ 210 (324)
+.+.|...|++++...|.++..|......
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 67889999999999999999999876543
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] | Back alignment and domain information |
|---|
Probab=85.86 E-value=18 Score=29.57 Aligned_cols=171 Identities=9% Similarity=0.070 Sum_probs=84.8
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHh-cCCCC-chhhHHHHHHHHh-cccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Q psy8160 54 HLRLGLMFKVNNEYDSALKHLTLCL-IDASP-CTFTKLEGLMFKV-NNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAH 130 (324)
Q Consensus 54 ~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~-~~~~~~la~~~~~-~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~ 130 (324)
+..++.+....++|++.+.++++++ .+|.- ..-..+++..|.. .|....+.+.+............ .....+..
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~---~~~~~~i~ 80 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN---EKQVKLIK 80 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT---HHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch---hHHHHHHH
Confidence 5678889999999999999999999 65433 2334445555543 36666666666555443222210 11111111
Q ss_pred HHHH-----h-hcHHHHHHHHHHHHhcCCCCCchh--hHHHHHHHHHHHhhhhhcc---cchhHHHHHHHHHHHhh----
Q psy8160 131 LHEV-----Q-RKYKTAKDSYEQLLKEDDLPVHLK--ADICRQLGWMYHCIDTLGE---KSHRETLAIHCLQKSIE---- 195 (324)
Q Consensus 131 ~~~~-----~-~~~~~A~~~~~~al~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~---~~~~~~~A~~~~~~al~---- 195 (324)
-|.. . .--.+.+......+-.. ..+.+ ...+...|..|+....... ...-.+.|...|++|++
T Consensus 81 ~yk~kie~EL~~~C~eii~lId~~Lip~--~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~ 158 (236)
T PF00244_consen 81 DYKKKIEDELIDICNEIIRLIDKSLIPS--ATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKK 158 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHH--S-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhc
Confidence 1111 0 11122233333322111 11112 2233445666654333321 11234677777777764
Q ss_pred -hCCccHH---HHHHHHHHH-HHcCCHHHHHHHHHHHHc
Q psy8160 196 -ADPKSGQ---SLYLLGRCF-AAVGKVHDAFLAYRNSVE 229 (324)
Q Consensus 196 -~~~~~~~---~~~~lg~~~-~~~~~~~~A~~~~~~al~ 229 (324)
+.|.+|- ...+.+..+ ...|+.++|+...++|+.
T Consensus 159 ~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 159 ELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred ccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3455552 223334333 447888888888777754
|
There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A .... |
| >PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] | Back alignment and domain information |
|---|
Probab=85.71 E-value=1.2 Score=39.26 Aligned_cols=62 Identities=16% Similarity=0.105 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCC---------CCHHHHHHhHHHHhhcCCCHHHHHHHH-HHHHhh
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSE---------GNADTWCSIGNKDFSNNSNREDYHQAL-NKYRDL 265 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p---------~~~~~~~~lg~~~~~~~~~~~~A~~~~-~~~~~l 265 (324)
.+...|.+++.-.|||..|++..+.. +++. -+..+++.+|-+|+.+++ |.+|++.| .++..+
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrR-Y~DAir~f~~iL~yi 194 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRR-YADAIRTFSQILLYI 194 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 35567788999999999999988653 3332 235578899999999999 99999999 443333
|
|
| >KOG1463|consensus | Back alignment and domain information |
|---|
Probab=85.63 E-value=22 Score=30.49 Aligned_cols=176 Identities=16% Similarity=0.187 Sum_probs=112.1
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHh-c----C--CCCchhhHHHHHHHHhcccHHHHHHHHHHHHHh-cC-CCcc-cHHHH
Q psy8160 55 LRLGLMFKVNNEYDSALKHLTLCL-I----D--ASPCTFTKLEGLMFKVNNEYDSALKHLTLCLID-AS-PCTF-TKLEV 124 (324)
Q Consensus 55 ~~lg~~~~~~~~~~~A~~~~~~al-~----~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-~~-~~~~-~~~~~ 124 (324)
.++...|...++|.+|+......+ . | +.-...+......|....+...|...+..+-.. +. -+++ .++.+
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~l 211 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATL 211 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHH
Confidence 467788999999999999887766 2 2 334555666788888888888888877666322 11 1111 12233
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHH
Q psy8160 125 RFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSL 204 (324)
Q Consensus 125 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 204 (324)
-.+=|-.|....+|..|-.+|-++.+-...-+. ...++..+-++..+.-..+ .-+--.++-.-+.+++....+.++.
T Consensus 212 DLqSGIlha~ekDykTafSYFyEAfEgf~s~~~-~v~A~~sLKYMlLcKIMln--~~ddv~~lls~K~~l~y~g~~i~Am 288 (411)
T KOG1463|consen 212 DLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDD-DVKALTSLKYMLLCKIMLN--LPDDVAALLSAKLALKYAGRDIDAM 288 (411)
T ss_pred HHhccceeecccccchHHHHHHHHHccccccCC-cHHHHHHHHHHHHHHHHhc--CHHHHHHHHhhHHHHhccCcchHHH
Confidence 333366677779999999999999876532222 1235555555554422111 1122234444555666666777888
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHHHccCCC
Q psy8160 205 YLLGRCFAAV--GKVHDAFLAYRNSVEKSEG 233 (324)
Q Consensus 205 ~~lg~~~~~~--~~~~~A~~~~~~al~~~p~ 233 (324)
...+..+... .+|+.|+..|..-+..+|-
T Consensus 289 kavAeA~~nRSLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 289 KAVAEAFGNRSLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence 8888887654 6788999999888877763
|
|
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=85.37 E-value=5.3 Score=32.86 Aligned_cols=75 Identities=15% Similarity=0.108 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHHhhhCCcc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC------HHHHHHhHHHHhhcC
Q psy8160 182 RETLAIHCLQKSIEADPKS------GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN------ADTWCSIGNKDFSNN 249 (324)
Q Consensus 182 ~~~~A~~~~~~al~~~~~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~ 249 (324)
.....+..+.+|.+..... ......+|..|+..|++++|+..|+.+....... ..+...+..|+...|
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 3445566677666544322 2456688999999999999999999996544332 334556677777777
Q ss_pred CCHHHHHH
Q psy8160 250 SNREDYHQ 257 (324)
Q Consensus 250 ~~~~~A~~ 257 (324)
+ .++.+.
T Consensus 233 ~-~~~~l~ 239 (247)
T PF11817_consen 233 D-VEDYLT 239 (247)
T ss_pred C-HHHHHH
Confidence 7 666544
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >PHA02537 M terminase endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=84.93 E-value=19 Score=29.15 Aligned_cols=56 Identities=23% Similarity=0.403 Sum_probs=38.1
Q ss_pred HHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhc---ccchhHHHHHHHHHHHhhhCCccH
Q psy8160 145 YEQLLKEDDLPVHLKADICRQLGWMYHCIDTLG---EKSHRETLAIHCLQKSIEADPKSG 201 (324)
Q Consensus 145 ~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~A~~~~~~al~~~~~~~ 201 (324)
+..+...-+.|+.+.+..+...|..+... ..| ...++...|+.++++|+.++|+..
T Consensus 154 ~~~l~~~~dmpd~vrAKl~K~~G~~llr~-~~g~~~~d~~~l~~Al~~L~rA~~l~~k~G 212 (230)
T PHA02537 154 FLDLTTEWDMPDEVRAKLYKAAGYLLLRN-EKGEPIGDAETLQLALALLQRAFQLNDKCG 212 (230)
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHhhc-ccCCCccCcccHHHHHHHHHHHHHhCCCCC
Confidence 44444445668877788888999888541 111 113477889999999999998754
|
|
| >KOG2114|consensus | Back alignment and domain information |
|---|
Probab=84.87 E-value=39 Score=32.71 Aligned_cols=31 Identities=13% Similarity=0.119 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc
Q psy8160 121 KLEVRFHIAHLHEVQRKYKTAKDSYEQLLKE 151 (324)
Q Consensus 121 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 151 (324)
..+++...|..++..|++++|...|-+.+..
T Consensus 367 ~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 367 LAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 3456666677777777777777777766643
|
|
| >KOG0529|consensus | Back alignment and domain information |
|---|
Probab=84.83 E-value=27 Score=30.77 Aligned_cols=101 Identities=10% Similarity=0.063 Sum_probs=77.9
Q ss_pred cHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHc--
Q psy8160 137 KYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAV-- 214 (324)
Q Consensus 137 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~-- 214 (324)
-.++-+.....++..+ |+++. +|..+.|+.... + ..++..-+...+++++.+|.+-.+|...=.+....
T Consensus 90 ~ld~eL~~~~~~L~~n--pksY~--aW~hR~w~L~~~---p--~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~ 160 (421)
T KOG0529|consen 90 LLDEELKYVESALKVN--PKSYG--AWHHRKWVLQKN---P--HSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAER 160 (421)
T ss_pred hhHHHHHHHHHHHHhC--chhHH--HHHHHHHHHHhC---C--CchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhc
Confidence 4566677888888989 98865 999999999652 1 22688889999999999999998887655444433
Q ss_pred --CCHHHHHHHHHHHHccCCCCHHHHHHhHHHHh
Q psy8160 215 --GKVHDAFLAYRNSVEKSEGNADTWCSIGNKDF 246 (324)
Q Consensus 215 --~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 246 (324)
....+=+++..+++.-++.|-.+|.+...+..
T Consensus 161 ~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 161 SRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred ccccchhHHHHHHHHHhccchhhhHHHHHHHHHH
Confidence 23566788899999999999999988776665
|
|
| >KOG3783|consensus | Back alignment and domain information |
|---|
Probab=84.06 E-value=34 Score=31.30 Aligned_cols=57 Identities=14% Similarity=0.127 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcc---CCCC----HHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 203 SLYLLGRCFAAVGKVHDAFLAYRNSVEK---SEGN----ADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 203 ~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~----~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
-++.+|.++...|+...|..+|..+++. ...+ |-+++.+|.++...+....++...+
T Consensus 451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L 514 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALL 514 (546)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHH
Confidence 3567899999999999999999998843 2222 7789999999998876466776554
|
|
| >KOG2114|consensus | Back alignment and domain information |
|---|
Probab=83.52 E-value=25 Score=34.00 Aligned_cols=39 Identities=15% Similarity=0.230 Sum_probs=32.3
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh--cCCCCchhhH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL--IDASPCTFTK 88 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al--~~~~~~~~~~ 88 (324)
-.+++...|..++..|++++|...|-+.| ++|....-.+
T Consensus 367 ~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kf 407 (933)
T KOG2114|consen 367 LAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKF 407 (933)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHh
Confidence 35688999999999999999999999999 7777654433
|
|
| >KOG2422|consensus | Back alignment and domain information |
|---|
Probab=81.66 E-value=44 Score=30.93 Aligned_cols=158 Identities=14% Similarity=0.138 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhccC-CC--------cccchHHHHHHHHHHHHhccHHHHHHHHHHHh-c---------------------
Q psy8160 31 IKAIKTFQQLLYVD-PS--------YLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-I--------------------- 79 (324)
Q Consensus 31 ~~A~~~~~~~l~~~-p~--------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~--------------------- 79 (324)
++|...|.-+.... |+ .|...+.+..++.++..+||.+.|-....+++ .
T Consensus 255 eqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~ 334 (665)
T KOG2422|consen 255 EQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYI 334 (665)
T ss_pred HHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCccc
Confidence 67777776666543 32 23445678999999999999998888888877 2
Q ss_pred CCCCchhhHHH---HHHHHhcccHHHHHHHHHHHHHhcCC-CcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC---
Q psy8160 80 DASPCTFTKLE---GLMFKVNNEYDSALKHLTLCLIDASP-CTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKED--- 152 (324)
Q Consensus 80 ~~~~~~~~~~l---a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--- 152 (324)
.|.|-.++..+ -..+...|-+..|.++++-.+...|. ++. -+.+.+-.......+|.=-++.++..-..+
T Consensus 335 ~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl---~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~ 411 (665)
T KOG2422|consen 335 YPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPL---GILYLIDIYALRAREYQWIIELSNEPENMNKLS 411 (665)
T ss_pred chhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCch---hHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHh
Confidence 22222233222 22334568899999999988888777 332 122333333334444444444444432221
Q ss_pred CCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCC
Q psy8160 153 DLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADP 198 (324)
Q Consensus 153 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 198 (324)
..|+-. --..+++.|..... ...-+.|...+.+|+...|
T Consensus 412 ~~PN~~---yS~AlA~f~l~~~~----~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 412 QLPNFG---YSLALARFFLRKNE----EDDRQSALNALLQALKHHP 450 (665)
T ss_pred hcCCch---HHHHHHHHHHhcCC----hhhHHHHHHHHHHHHHhCc
Confidence 114321 11233444433111 1135668888888888777
|
|
| >PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex [] | Back alignment and domain information |
|---|
Probab=81.01 E-value=41 Score=30.14 Aligned_cols=99 Identities=18% Similarity=0.134 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHH-------HHHHHhcccH-------HHHHHHHHHHHHhcCC--
Q psy8160 53 VHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLE-------GLMFKVNNEY-------DSALKHLTLCLIDASP-- 116 (324)
Q Consensus 53 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~l-------a~~~~~~~~~-------~~A~~~~~~~l~~~~~-- 116 (324)
....||.+++..+||+.|...|+.+..|-.+..++..+ |......+.. +....+++.++.....
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~ 289 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSA 289 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhh
Confidence 35679999999999999999999877554444444332 3323333211 2333344443221111
Q ss_pred ---Cc--ccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc
Q psy8160 117 ---CT--FTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKE 151 (324)
Q Consensus 117 ---~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 151 (324)
.. .....+....+.++...+.+.+|...+-+....
T Consensus 290 ~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 290 LPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred ccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 01 111234445566666777777766655555443
|
Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ]. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 324 | ||||
| 2q7f_A | 243 | Crystal Structure Of Yrrb: A Tpr Protein With An Un | 9e-06 | ||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 6e-05 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 7e-05 |
| >pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual Peptide- Binding Site Length = 243 | Back alignment and structure |
|
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 7e-12
Identities = 29/202 (14%), Positives = 65/202 (32%), Gaps = 26/202 (12%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLT--LCLIDASPCTFTKL 89
+A+ + + L +GL + + N A + + L + P ++
Sbjct: 143 QAMAAYFTAAQLMKGCHLP---MLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEV 199
Query: 90 EGLMFKVNNEYDSALKHLTLCL-----IDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDS 144
G++ N E+ +A K L I + ++ H+ +KY A D
Sbjct: 200 -GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258
Query: 145 YEQLL--KEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQ 202
+ Q L + + +G+++ A+ ++
Sbjct: 259 HRQALVLIPQNASTYS------AIGYIHS-------LMGNFENAVDYFHTALGLRRDDTF 305
Query: 203 SLYLLGRCFAAVGKVHDAFLAY 224
S+ +LG C +A++
Sbjct: 306 SVTMLGHCIEMYIGDSEAYIGA 327
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 6e-10
Identities = 32/225 (14%), Positives = 79/225 (35%), Gaps = 34/225 (15%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKH----LTLCLIDASPCTFT 87
A + + ++ +Y A + G F V +E+D A+ L P +
Sbjct: 109 HARRYLSKATTLEKTYGPA---WIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYI 165
Query: 88 KLEGLMFKVNNEYDSALKH----LTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKD 143
GL + + N A + L++ D V + + ++KTA+
Sbjct: 166 ---GLEYGLTNNSKLAERFFSQALSIAPEDP--------FVMHEVGVVAFQNGEWKTAEK 214
Query: 144 SYEQLLK-----EDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADP 198
+ L+ +++ V + LG + + E A+ ++++ P
Sbjct: 215 WFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE-------ALDYHRQALVLIP 267
Query: 199 KSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243
++ + +G + +G +A + ++ + + +G+
Sbjct: 268 QNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGH 312
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 9e-08
Identities = 40/243 (16%), Positives = 68/243 (27%), Gaps = 31/243 (12%)
Query: 91 GLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLK 150
N ++ K LT +++ P + L V HI L E K +L+
Sbjct: 29 AERHYYNCDFKMCYK-LTSVVMEKDPFHASCLPV--HIGTLVE-LNKANELFYLSHKLVD 84
Query: 151 EDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRC 210
P + +G Y + E A L K+ + G + G
Sbjct: 85 LY--PSN--PVSWFAVGCYYLMVGHKNEH------ARRYLSKATTLEKTYGPAWIAYGHS 134
Query: 211 FAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYR-----DL 265
FA + A AY + + +G IG + A +
Sbjct: 135 FAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGL----EYGLTNNSKLAERFFSQALSIAP 190
Query: 266 GDFLVINNIPTSNNNRQCYNSYSTSIASCKH-INNNKDFSNNSNREDYHQALNK----YR 320
D V++ + + T+ + K N + + LN R
Sbjct: 191 EDPFVMHEVGVVAFQN---GEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCR 247
Query: 321 DLG 323
L
Sbjct: 248 KLK 250
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 1e-07
Identities = 25/143 (17%), Positives = 52/143 (36%), Gaps = 16/143 (11%)
Query: 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSH 181
L+V +A H +K ++++D P H + I TL E +
Sbjct: 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASC--------LPVHIGTLVEL-N 70
Query: 182 RETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHD-AFLAYRNSVEKSEGNADTWCS 240
+ + K ++ P + S + +G + VG ++ A + + W +
Sbjct: 71 KANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIA 130
Query: 241 IGNKDFSNNSNREDYHQALNKYR 263
G+ F+ ++ QA+ Y
Sbjct: 131 YGH-SFAVE---SEHDQAMAAYF 149
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 34/248 (13%), Positives = 76/248 (30%), Gaps = 46/248 (18%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALK--HLTLCLIDASPCTFTKL 89
K ++ DP + N+ + H + L ++P ++ +
Sbjct: 40 MCYKLTSVVMEKDPFHA---SCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAV 96
Query: 90 EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIA-----HLHEVQRKYKTAKDS 144
V ++ + A ++L+ T LE + A H V+ ++ A +
Sbjct: 97 GCYYLMVGHKNEHARRYLSKA---------TTLEKTYGPAWIAYGHSFAVESEHDQAMAA 147
Query: 145 YEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSL 204
Y + + +G Y ++ LA +++ P+ +
Sbjct: 148 YFTAAQLM--KGCHLPMLY--IGLEYG-------LTNNSKLAERFFSQALSIAPEDPFVM 196
Query: 205 YLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNK--- 261
+ +G G+ A + +++EK K N + + LN
Sbjct: 197 HEVGVVAFQNGEWKTAEKWFLDALEK------------IKAIGNEVTVDKWEPLLNNLGH 244
Query: 262 -YRDLGDF 268
R L +
Sbjct: 245 VCRKLKKY 252
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 3e-10
Identities = 27/239 (11%), Positives = 59/239 (24%), Gaps = 23/239 (9%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLE 90
+ + + A G+ + N A L + + +P ++ L
Sbjct: 227 SLLSANTVDDPLRENAALA---LCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFL- 282
Query: 91 GLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLL 149
L K + ++ +H ++ + + YK AK+ +++
Sbjct: 283 ALTLADKENSQEFFKFFQKAVDLNP-----EYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337
Query: 150 KEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGR 209
+ P + QL + + E + ++ P +
Sbjct: 338 SLN--PEN--VYPYIQLACLLYKQGKFTE-------SEAFFNETKLKFPTLPEVPTFFAE 386
Query: 210 CFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDF 268
G A Y + E IG + D F
Sbjct: 387 ILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGP-LIGKATILARQSSQDPTQLDEEKF 444
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 6e-07
Identities = 33/235 (14%), Positives = 67/235 (28%), Gaps = 26/235 (11%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLE- 90
A L S + L+ K + Y S L T+ L
Sbjct: 191 TAYALLSDALQRLYSATDEGY-LVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCY 248
Query: 91 -GLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQL 148
G+ + N A L + + +P ++ L A + + +++
Sbjct: 249 TGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFL------ALTLADKENSQEFFKFFQKA 302
Query: 149 LKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLG 208
+ + P + G MY + A QK+ +P++ L
Sbjct: 303 VDLN--PEY--PPTYYHRGQMYFILQDYKN-------AKEDFQKAQSLNPENVYPYIQLA 351
Query: 209 RCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYR 263
GK ++ + + K + ++R D+ A+ +Y
Sbjct: 352 CLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEI----LTDRGDFDTAIKQYD 402
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 2e-06
Identities = 27/235 (11%), Positives = 65/235 (27%), Gaps = 14/235 (5%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEG 91
K I+ + L + P + +A LR + + A+ L++ ++ F
Sbjct: 77 KVIEFTTKALEIKPDHSKA---LLRRASANESLGNFTDAMFDLSVLSLNGD---FDGASI 130
Query: 92 LMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKE 151
N A+K L L L +A + + +
Sbjct: 131 EPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYD 190
Query: 152 D---DLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLG 208
L L+ D L + + + + +L G
Sbjct: 191 TAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTG 250
Query: 209 RCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYR 263
+ DA + + S+ +++ + +++E+ + ++
Sbjct: 251 IFHFLKNNLLDAQVLLQESINL-HPTPNSYIFLALT----LADKENSQEFFKFFQ 300
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 2e-06
Identities = 38/250 (15%), Positives = 84/250 (33%), Gaps = 23/250 (9%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-ID-ASPCTFTKL 89
+ K FQ+ + ++P Y + G M+ + +Y +A + ++ + + +L
Sbjct: 294 EFFKFFQKAVDLNPEYP---PTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQL 350
Query: 90 EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQ-- 147
+ ++ + P T EV A + + + TA Y+
Sbjct: 351 -ACLLYKQGKFTESEAFFNET-KLKFP---TLPEVPTFFAEILTDRGDFDTAIKQYDIAK 405
Query: 148 LLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSH---RETLAIHCLQKSIEADPKSGQSL 204
L+E +H+ + + + AI L K+ E DP+S Q+
Sbjct: 406 RLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAK 465
Query: 205 YLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDF--------SNNSNREDYH 256
L + + K+ +A + +S + + + + ++
Sbjct: 466 IGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTFAEAAKIQKRLRADPIISAKME 525
Query: 257 QALNKYRDLG 266
L +YR G
Sbjct: 526 LTLARYRAKG 535
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 1e-05
Identities = 18/185 (9%), Positives = 46/185 (24%), Gaps = 12/185 (6%)
Query: 137 KYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEA 196
+ + QL A + G + + AI Q +IE
Sbjct: 2 SHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFF-------TAKNFNEAIKYYQYAIEL 54
Query: 197 DPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYH 256
DP + C+ + G + ++E ++ + N + ++
Sbjct: 55 DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRAS----ANESLGNFT 110
Query: 257 QALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINN-NKDFSNNSNREDYHQA 315
A+ L + + N + + + + + +
Sbjct: 111 DAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASF 170
Query: 316 LNKYR 320
+
Sbjct: 171 FGIFD 175
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 7e-10
Identities = 49/279 (17%), Positives = 94/279 (33%), Gaps = 34/279 (12%)
Query: 52 EVHLRLGLMFKVNNEYDSALKHLTLCLIDASP---CTFTKLEGLMFKVNNEYDSALKHLT 108
E HL LG + AL +D P + + +F + +AL LT
Sbjct: 4 EKHLELGKKLLAAGQLADALSQFHAA-VDGDPDNYIAYYRR-ATVFLAMGKSKAALPDLT 61
Query: 109 LCL-IDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLK---EDDLPVHLKADICR 164
+ + FT R HL Q K A+D ++++LK + ++ + +
Sbjct: 62 KVIALKMD---FTA--ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVK 116
Query: 165 ---QLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAF 221
+D + AI L K +E + L CF G+ A
Sbjct: 117 ADEMQRLRSQALDAFDGADYTA--AITFLDKILEVCVWDAELRELRAECFIKEGEPRKAI 174
Query: 222 LAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNR 281
+ + + N + + I + D+ +L++ R+ + +++
Sbjct: 175 SDLKAASKLKSDNTEAFYKISTLYYQLG----DHELSLSEVRE-----CLKLDQ---DHK 222
Query: 282 QCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYR 320
+C+ Y K I + ++ Y A +KY
Sbjct: 223 RCFAHYKQVKKLNKLIESAEEL---IRDGRYTDATSKYE 258
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 2e-07
Identities = 28/212 (13%), Positives = 62/212 (29%), Gaps = 35/212 (16%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEG 91
KAI + + A ++ ++ +++ +L + CL
Sbjct: 172 KAISDLKAASKLKSDNTEA---FYKISTLYYQLGDHELSLSEVRECL------------- 215
Query: 92 LMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKE 151
K++ ++ H KL A +Y A YE ++K
Sbjct: 216 ---KLDQDHKRCFAHYKQVK---------KLNKLIESAEELIRDGRYTDATSKYESVMKT 263
Query: 152 DDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCF 211
+ ++ HC + E AI + ++ +P + +L +
Sbjct: 264 EPSVAEYTVRSKERIC---HCFSKDEK--PVE--AIRICSEVLQMEPDNVNALKDRAEAY 316
Query: 212 AAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243
+A Y + E +E + +
Sbjct: 317 LIEEMYDEAIQDYEAAQEHNENDQQIREGLEK 348
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 3e-07
Identities = 26/237 (10%), Positives = 67/237 (28%), Gaps = 43/237 (18%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEG 91
A+ +++ + + A L+ G + + D A L
Sbjct: 55 AALPDLTKVIALKMDFTAA---RLQRGHLLLKQGKLDEAEDDFKKVL------------- 98
Query: 92 LMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKE 151
K N + + + +++ A Y A +++L+
Sbjct: 99 ---KSNPSEQEEKEAESQLV------KADEMQRLRSQALDAFDGADYTAAITFLDKILEV 149
Query: 152 DDLPV---HLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLG 208
L+A+ + G R+ AI L+ + + + ++ Y +
Sbjct: 150 CVWDAELRELRAECFIKEG------------EPRK--AISDLKAASKLKSDNTEAFYKIS 195
Query: 209 RCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN-KDFSNNSNREDYHQALNKYRD 264
+ +G + R ++ + + + K + + +Y D
Sbjct: 196 TLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTD 252
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 1e-05
Identities = 38/257 (14%), Positives = 75/257 (29%), Gaps = 40/257 (15%)
Query: 32 KAIKTFQQLLYVDPSYLRA------------NEVHLRLGLMFKVNNEYDSALKHLTLCL- 78
+A F+++L +PS + L +Y +A+ L L
Sbjct: 89 EAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILE 148
Query: 79 IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAH-----LHE 133
+ +L F E A+ L KL+ A L+
Sbjct: 149 VCVWDAELRELRAECFIKEGEPRKAISDLKAAS---------KLKSDNTEAFYKISTLYY 199
Query: 134 VQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGE---KSHRETLAIHCL 190
++ + + LK D H + + + + E + R T A
Sbjct: 200 QLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKY 257
Query: 191 QKSIEADPK----SGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDF 246
+ ++ +P + +S + CF+ K +A ++ N +
Sbjct: 258 ESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAE--- 314
Query: 247 SNNSNREDYHQALNKYR 263
E Y +A+ Y
Sbjct: 315 -AYLIEEMYDEAIQDYE 330
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 9e-10
Identities = 50/281 (17%), Positives = 94/281 (33%), Gaps = 38/281 (13%)
Query: 52 EVHLRLGLMFKVNNEYDSALKHLTLCLIDASP---CTFTKLEGLMFKVNNEYDSALKHLT 108
E HL LG + AL +D P + + +F + +AL LT
Sbjct: 27 EKHLELGKKLLAAGQLADALSQFHAA-VDGDPDNYIAYYRR-ATVFLAMGKSKAALPDLT 84
Query: 109 LCL-IDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQ-- 165
+ + FT R HL Q K A+D ++++LK + P + +
Sbjct: 85 KVIQLKMD---FTA--ARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQL 137
Query: 166 ------LGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHD 219
++ G + AI L K +E + L CF G+
Sbjct: 138 IKSDEMQRLRSQALNAFGSGDYTA--AIAFLDKILEVCVWDAELRELRAECFIKEGEPRK 195
Query: 220 AFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNN 279
A + + + N + + I + D+ +L++ R+ + +
Sbjct: 196 AISDLKAASKLKNDNTEAFYKISTLYYQLG----DHELSLSEVRE-----CLKLDQ---D 243
Query: 280 NRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYR 320
+++C+ Y K I + ++ Y A +KY
Sbjct: 244 HKRCFAHYKQVKKLNKLIESAEEL---IRDGRYTDATSKYE 281
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 1e-07
Identities = 35/309 (11%), Positives = 85/309 (27%), Gaps = 58/309 (18%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEG 91
A+ +++ + + A L+ G + + D A L
Sbjct: 78 AALPDLTKVIQLKMDFTAA---RLQRGHLLLKQGKLDEAEDDFKKVL------------- 121
Query: 92 LMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKE 151
K N + + + + +++ A Y A +++L+
Sbjct: 122 ---KSNPSENEEKEAQSQLI------KSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV 172
Query: 152 --DDLPVH-LKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLG 208
D + L+A+ + G AI L+ + + + ++ Y +
Sbjct: 173 CVWDAELRELRAECFIKEG--------------EPRKAISDLKAASKLKNDNTEAFYKIS 218
Query: 209 RCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN--------KDFSNNSNREDYHQALN 260
+ +G + R ++ + + + + Y A +
Sbjct: 219 TLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATS 278
Query: 261 KYRDLGDFLVINNIPTSN--NNR-QCY---NSYSTSIASC-KHINNNKDFSNN-SNREDY 312
KY + T C+ +I C + + D N +R +
Sbjct: 279 KYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEA 338
Query: 313 HQALNKYRD 321
+ Y +
Sbjct: 339 YLIEEMYDE 347
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 3e-06
Identities = 23/221 (10%), Positives = 56/221 (25%), Gaps = 33/221 (14%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-ID---------- 80
KAI + + A ++ ++ +++ +L + CL +D
Sbjct: 195 KAISDLKAASKLKNDNTEA---FYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHY 251
Query: 81 --ASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKY 138
+ Y A + + + I H K
Sbjct: 252 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKP 311
Query: 139 KTAKDSYEQLLK--EDDLPVHL-KADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIE 195
A ++L+ D++ +A+ AI + + E
Sbjct: 312 VEAIRVCSEVLQMEPDNVNALKDRAEAYLIEE--------------MYDEAIQDYETAQE 357
Query: 196 ADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNAD 236
+ Q L + + + V+++ +
Sbjct: 358 HNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQE 398
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 5e-06
Identities = 38/252 (15%), Positives = 76/252 (30%), Gaps = 30/252 (11%)
Query: 32 KAIKTFQQLLYVDPSYLRANEV------------HLRLGLMFKVNNEYDSALKHLTLCL- 78
+A F+++L +PS E L + +Y +A+ L L
Sbjct: 112 EAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILE 171
Query: 79 IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKY 138
+ +L F E A+ L E + I+ L+ +
Sbjct: 172 VCVWDAELRELRAECFIKEGEPRKAISDLK-AASKLKN---DNTEAFYKISTLYYQLGDH 227
Query: 139 KTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGE---KSHRETLAIHCLQKSIE 195
+ + + LK D H + + + + E + R T A + ++
Sbjct: 228 ELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK 285
Query: 196 ADPK----SGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSN 251
+P + +S + CF+ K +A ++ N +
Sbjct: 286 TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAE----AYLI 341
Query: 252 REDYHQALNKYR 263
E Y +A+ Y
Sbjct: 342 EEMYDEAIQDYE 353
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 1e-09
Identities = 34/233 (14%), Positives = 74/233 (31%), Gaps = 20/233 (8%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEG 91
+A + +++ L VD A + L + + E+D LK L S L
Sbjct: 218 RAKECYKEALMVDAKCYEAFD-QLVSNHLLTADEEWDLVLK---LNYSTYSKEDAAFLRS 273
Query: 92 LMFKVNNEYDSALKH-LTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLK 150
L N+ + + + ++ A V+ ++ ++L+
Sbjct: 274 LYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILE 333
Query: 151 EDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRC 210
D P +L + +L E + ++ P+ + +G
Sbjct: 334 ID--PYNLDV--------YPLHLASLHES-GEKNKLYLISNDLVDRHPEKAVTWLAVGIY 382
Query: 211 FAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYR 263
+ V K+ +A + S W + F+ ++ QA++ Y
Sbjct: 383 YLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHS-FAIE---GEHDQAISAYT 431
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 1e-08
Identities = 31/223 (13%), Positives = 59/223 (26%), Gaps = 32/223 (14%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKH----LTLCLIDASPCTFT 87
+A + F + +DP + A + F + E+D A+ L P F
Sbjct: 391 EARRYFSKSSTMDPQFGPA---WIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFL 447
Query: 88 KLEGLMFKVNNEYDSALKH----LTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKD 143
G+ A ++ L D + + + + +TA +
Sbjct: 448 ---GMQHMQLGNILLANEYLQSSYALFQYDP--------LLLNELGVVAFNKSDMQTAIN 496
Query: 144 SYEQ---LLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS 200
++ L+K+ A LG Y K AI L + +
Sbjct: 497 HFQNALLLVKKTQSNEKPWAATWANLGHAY-------RKLKMYDAAIDALNQGLLLSTND 549
Query: 201 GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243
+ + A S+ S +
Sbjct: 550 ANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKR 592
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 1e-07
Identities = 30/185 (16%), Positives = 57/185 (30%), Gaps = 20/185 (10%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-ID-ASPCTFTKL 89
+AI + + +L LG+ A ++L + P +L
Sbjct: 425 QAISAYTTAARLFQGTHLP---YLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNEL 481
Query: 90 EGLMFKVNNEYDSALKHLTLCL---IDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYE 146
G++ ++ +A+ H L ++ H + + Y A D+
Sbjct: 482 -GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN 540
Query: 147 QLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYL 206
Q L A++ + +Y LAI L +S+ P + L
Sbjct: 541 QGLLLS--TND--ANVHTAIALVYL-------HKKIPGLAITHLHESLAISPNEIMASDL 589
Query: 207 LGRCF 211
L R
Sbjct: 590 LKRAL 594
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 2e-06
Identities = 32/198 (16%), Positives = 60/198 (30%), Gaps = 23/198 (11%)
Query: 52 EVHLRLGLMFKVNNEYDSALKHLTLCL-ID-ASPCTFTKL-EGLMFKVNNEYDSALKHLT 108
+ G ++ + +D A + L +D F +L + + E+D LK
Sbjct: 201 SMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLK--- 257
Query: 109 LCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLK--EDDLPVHL-KADICRQ 165
L S L + + + Y + E + L KAD
Sbjct: 258 LNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFV 317
Query: 166 LGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYR 225
+ + K +E DP + L G+ + +L
Sbjct: 318 RS-RFI-------------DVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISN 363
Query: 226 NSVEKSEGNADTWCSIGN 243
+ V++ A TW ++G
Sbjct: 364 DLVDRHPEKAVTWLAVGI 381
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 2e-04
Identities = 29/260 (11%), Positives = 65/260 (25%), Gaps = 72/260 (27%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASP-------- 83
+ ++L +DP L +V+ + E + L+D P
Sbjct: 323 DVLAITTKILEIDPYNL---DVYPLHLASLHESGEKNKLYLISND-LVDRHPEKAVTWLA 378
Query: 84 --CTFTKLE--------------------------GLMFKVNNEYDSALKHLTLCLIDAS 115
+ + F + E+D A+ T
Sbjct: 379 VGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAA---- 434
Query: 116 PCTFTKLEVRFHIAHL-----HEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMY 170
+L H+ +L H A + + + + +
Sbjct: 435 -----RLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYA-----------LFQYDPLLL 478
Query: 171 HCIDTLGEKSHRETLAIHCLQKSIEA-------DPKSGQSLYLLGRCFAAVGKVHDAFLA 223
+ + + AI+ Q ++ + + LG + + A A
Sbjct: 479 NELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDA 538
Query: 224 YRNSVEKSEGNADTWCSIGN 243
+ S +A+ +I
Sbjct: 539 LNQGLLLSTNDANVHTAIAL 558
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 7e-04
Identities = 32/212 (15%), Positives = 58/212 (27%), Gaps = 27/212 (12%)
Query: 64 NNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKL 122
+Y A L I +P L + +Y A L+
Sbjct: 97 QQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCC-TGDYARAKC-----LLTKEDLYNRSS 150
Query: 123 EVRFHIAHLHEVQRKYKTA------------KDSYEQLLKEDDLPVHLKADICRQLGWMY 170
R+ A ++ A + L D + L+A +C G +Y
Sbjct: 151 ACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVY 210
Query: 171 HCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEK 230
A C ++++ D K ++ L + N
Sbjct: 211 T-------NLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTY 263
Query: 231 SEGNADTWCSIGNKDFSNNSNREDYHQALNKY 262
S+ +A S+ + S+ ED + Y
Sbjct: 264 SKEDAAFLRSLYMLKLNKTSH-EDELRRAEDY 294
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 57.7 bits (139), Expect = 2e-09
Identities = 23/154 (14%), Positives = 50/154 (32%), Gaps = 22/154 (14%)
Query: 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYH--CIDTLGEKS 180
E + ++ + +A + L + L + D+ E S
Sbjct: 138 EAWNQLGEVYWKKGDVTSAHTCFSGALTHCK-----NKVSLQNLSMVLRQLQTDSGDEHS 192
Query: 181 HRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAV--------GKVHDAFLAYRNSVE--- 229
++ + +++ D G+S Y+LG + ++ A AY + +
Sbjct: 193 RHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR 252
Query: 230 KSEGNADTWCSIGNKDFSNNSNREDYHQALNKYR 263
K+ N D + + E Y +AL +
Sbjct: 253 KASSNPDLHLNRAT----LHKYEESYGEALEGFS 282
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 3e-09
Identities = 42/234 (17%), Positives = 79/234 (33%), Gaps = 25/234 (10%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-ID-ASPCTFTKL 89
A + QL +P L L + D + TL + + ++ L
Sbjct: 17 AAERHCMQLWRQEPDNTGV---LLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNL 73
Query: 90 EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLL 149
G ++K + A++H + P ++ ++A + A +Y L
Sbjct: 74 -GNVYKERGQLQEAIEHYRHA-LRLKP---DFIDGYINLAAALVAAGDMEGAVQAYVSAL 128
Query: 150 KEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGR 209
+ + P + LG + + L E A C K+IE P + LG
Sbjct: 129 QYN--PDL--YCVRSDLGNLLKALGRLEE-------AKACYLKAIETQPNFAVAWSNLGC 177
Query: 210 CFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYR 263
F A G++ A + +V D + ++GN + +A+ Y
Sbjct: 178 VFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNV----LKEARIFDRAVAAYL 227
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 2e-08
Identities = 34/214 (15%), Positives = 73/214 (34%), Gaps = 21/214 (9%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-ID-ASPCTFTKL 89
++ + +P A + LG ++K + A++H L + + L
Sbjct: 51 RSAHFSTLAIKQNPLLAEA---YSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINL 107
Query: 90 EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLL 149
+ + A++ + +P VR + +L + + + AK Y + +
Sbjct: 108 -AAALVAAGDMEGAVQAYVSA-LQYNP---DLYCVRSDLGNLLKALGRLEEAKACYLKAI 162
Query: 150 KEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGR 209
+ P A LG +++ + AIH +K++ DP + LG
Sbjct: 163 ETQ--PNF--AVAWSNLGCVFNAQGEIWL-------AIHHFEKAVTLDPNFLDAYINLGN 211
Query: 210 CFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243
A AY ++ S +A ++
Sbjct: 212 VLKEARIFDRAVAAYLRALSLSPNHAVVHGNLAC 245
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 2e-06
Identities = 42/242 (17%), Positives = 75/242 (30%), Gaps = 41/242 (16%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-ID-ASPCTFTKL 89
+A + + + P++ A LG +F E A+ H + +D + L
Sbjct: 153 EAKACYLKAIETQPNFAVA---WSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINL 209
Query: 90 EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAH------LHEVQRKYKTAKD 143
G + K +D A+ L L + H +E Q A D
Sbjct: 210 -GNVLKEARIFDRAVAAYLRAL---------SLSPNHAVVHGNLACVYYE-QGLIDLAID 258
Query: 144 SYEQ--LLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG 201
+Y + L+ D L ++ E A C ++ P
Sbjct: 259 TYRRAIELQPHF------PDAYCNLANALKEKGSVAE-------AEDCYNTALRLCPTHA 305
Query: 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNK 261
SL L G + +A YR ++E A ++ + + +AL
Sbjct: 306 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS----VLQQQGKLQEALMH 361
Query: 262 YR 263
Y+
Sbjct: 362 YK 363
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 3e-05
Identities = 45/220 (20%), Positives = 84/220 (38%), Gaps = 33/220 (15%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-ID-ASPCTFTKL 89
AI F++ + +DP++L A ++ LG + K +D A+ L + L
Sbjct: 187 LAIHHFEKAVTLDPNFLDA---YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNL 243
Query: 90 EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAH------LHEVQRKYKTAKD 143
++ D A+ + +L+ F A+ L E + A+D
Sbjct: 244 -ACVYYEQGLIDLAIDTYRRAI---------ELQPHFPDAYCNLANALKE-KGSVAEAED 292
Query: 144 SYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQS 203
Y L+ P H AD L + + E A+ +K++E P+ +
Sbjct: 293 CYNTALRLC--PTH--ADSLNNLANIKREQGNIEE-------AVRLYRKALEVFPEFAAA 341
Query: 204 LYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243
L GK+ +A + Y+ ++ S AD + ++GN
Sbjct: 342 HSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 381
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 2e-08
Identities = 17/153 (11%), Positives = 38/153 (24%), Gaps = 22/153 (14%)
Query: 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKED------------DLPVHLKADICRQLGWMY 170
+ + A + Q + + D + + + +L Y
Sbjct: 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAY 64
Query: 171 HCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEK 230
+ A ++ ++ P + L G+ DA Y ++
Sbjct: 65 KKNRNYDK-------AYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL 117
Query: 231 SEGNADTWCSIGNKDFSNNSNREDYHQALNKYR 263
N +GN + E + L
Sbjct: 118 EADNLAANIFLGNYYYLTA---EQEKKKLETDY 147
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 3e-07
Identities = 28/198 (14%), Positives = 60/198 (30%), Gaps = 34/198 (17%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEG 91
+A+ F+Q + ++ + K + L
Sbjct: 22 QAVSYFRQTIALNIDRTEM----YYWTNVDKNSEISSKLATEL----------------A 61
Query: 92 LMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKE 151
L +K N YD A L+ +P ++ A + + + K A YE++L+
Sbjct: 62 LAYKKNRNYDKAYLFYKE-LLQKAP---NNVDCLEACAEMQVCRGQEKDALRMYEKILQL 117
Query: 152 DDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCF 211
+ + LG Y+ + +E + K + + K + Y G
Sbjct: 118 E--ADN--LAANIFLGNYYY------LTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSK 167
Query: 212 AAVGKVHDAFLAYRNSVE 229
+ A + + +
Sbjct: 168 LFTTRYEKARNSLQKVIL 185
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 2e-08
Identities = 17/143 (11%), Positives = 40/143 (27%), Gaps = 19/143 (13%)
Query: 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSH 181
LE + + K+ A+ ++ L D H A LG + +
Sbjct: 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD----HYDARYFLGLGACRQSL-----GLY 68
Query: 182 RETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSI 241
+ A+ D + + C +G + A + ++ +
Sbjct: 69 EQ--ALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPA----- 121
Query: 242 GNKDFSNNSNREDYHQALNKYRD 264
+ + +A+ +D
Sbjct: 122 ---HEALAARAGAMLEAVTARKD 141
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 1e-04
Identities = 16/74 (21%), Positives = 25/74 (33%), Gaps = 4/74 (5%)
Query: 190 LQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNN 249
L + + LY LG GK DA ++ +A + +G +
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLG----ACR 62
Query: 250 SNREDYHQALNKYR 263
+ Y QAL Y
Sbjct: 63 QSLGLYEQALQSYS 76
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 2e-08
Identities = 15/78 (19%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKD 245
+ LQ I A+P++ + LLG + ++ LAYR +++ NA+ + ++
Sbjct: 29 QLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVL 88
Query: 246 FSNNSNREDYHQALNKYR 263
+ ++ Q
Sbjct: 89 YYQA-SQHMTAQTRAMID 105
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 2e-07
Identities = 19/121 (15%), Positives = 35/121 (28%), Gaps = 11/121 (9%)
Query: 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHR 182
+A + + ++ L P H + +LG + R
Sbjct: 24 VAWLMLADAELGMGDTTAGEMAVQRGLALH--PGH--PEAVARLGRVRW-------TQQR 72
Query: 183 ETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242
A LQ++ +A P+ LG G+ A AY + + +
Sbjct: 73 HAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLL 132
Query: 243 N 243
N
Sbjct: 133 N 133
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 8e-05
Identities = 8/76 (10%), Positives = 26/76 (34%), Gaps = 1/76 (1%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKD 245
+ L+ ++ P+ + +L +G +A + + G+ + +G
Sbjct: 8 ELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVR 67
Query: 246 FSNNSNREDYHQALNK 261
++ + L +
Sbjct: 68 WTQQ-RHAEAAVLLQQ 82
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 2e-07
Identities = 12/114 (10%), Positives = 34/114 (29%), Gaps = 11/114 (9%)
Query: 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSH 181
++ + A+ + + + A+ + L D D L +Y ++
Sbjct: 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD----FYNVDYIMGLAAIYQ-----IKEQF 86
Query: 182 RETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNA 235
++ A + ++ G+C + A + ++ S
Sbjct: 87 QQ--AADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 3e-04
Identities = 6/58 (10%), Positives = 14/58 (24%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243
A + D + + L + + A Y + + + G
Sbjct: 55 AEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQ 112
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 3e-07
Identities = 32/234 (13%), Positives = 68/234 (29%), Gaps = 20/234 (8%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLE 90
+ F + L +D + + G M + YD A K +D
Sbjct: 288 EYYNYFDKALKLDSNNSSV---YYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQL 344
Query: 91 GLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQ--L 148
+ N++D + P EV A + + + A Y+
Sbjct: 345 ACLAYRENKFDDCETLFSEA-KRKFP---EAPEVPNFFAEILTDKNDFDKALKQYDLAIE 400
Query: 149 LKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLG 208
L+ +++ + T+ A + L+K+ + DP+S Q+ L
Sbjct: 401 LENKLDGIYVGIAPLVGKATLLTRNPTVENFI----EATNLLEKASKLDPRSEQAKIGLA 456
Query: 209 RCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKY 262
+ + +A + S + + + +I Q +
Sbjct: 457 QMKLQQEDIDEAITLFEESADLARTMEEKLQAITFA------EAAKVQQRIRSD 504
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 4e-06
Identities = 29/241 (12%), Positives = 69/241 (28%), Gaps = 30/241 (12%)
Query: 33 AIKTFQQLLYVDPSYLRA--NEVHLRLGLMFKVNNEYDSALKHLTLCL------IDASPC 84
+ + D + N K + + A + L
Sbjct: 176 TFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEK 235
Query: 85 TFT--KLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAK 142
+ G+ + N+ A + + I+ P ++ ++A + +
Sbjct: 236 LAISLEHTGIFKFLKNDPLGAHEDIKKA-IELFP----RVNSYIYMALIMADRNDSTEYY 290
Query: 143 DSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQ 202
+ +++ LK D + + + G M + + A K+ E DP++
Sbjct: 291 NYFDKALKLD--SNN--SSVYYHRGQMNFILQNYDQ-------AGKDFDKAKELDPENIF 339
Query: 203 SLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKY 262
L K D + + K + +++ D+ +AL +Y
Sbjct: 340 PYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEI----LTDKNDFDKALKQY 395
Query: 263 R 263
Sbjct: 396 D 396
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 3e-05
Identities = 23/245 (9%), Positives = 64/245 (26%), Gaps = 22/245 (8%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASP----CTFT 87
K ++ + L + P Y + LR + ++ A+ L++ ++
Sbjct: 57 KVVEMSTKALELKPDYSKV---LLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPM 113
Query: 88 KLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQ 147
L + ++ + + + + R + ++
Sbjct: 114 LERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKP 173
Query: 148 LLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETL----------AIHCLQKSIEAD 197
L + +AD G + + + + +
Sbjct: 174 ELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLK 233
Query: 198 PKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQ 257
K SL G A + ++E +++ + ++R D +
Sbjct: 234 EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP-RVNSYIYMALI----MADRNDSTE 288
Query: 258 ALNKY 262
N +
Sbjct: 289 YYNYF 293
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 6e-07
Identities = 20/144 (13%), Positives = 42/144 (29%), Gaps = 19/144 (13%)
Query: 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSH 181
LE + +A Y+ A ++ L D H + LG
Sbjct: 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD----HYDSRFFLGLGACRQ-------AMG 69
Query: 182 RETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSI 241
+ LAIH D + + C G++ +A + E +
Sbjct: 70 QYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQE--------LIAN 121
Query: 242 GNKDFSNNSNREDYHQALNKYRDL 265
+ ++ +A+ +++
Sbjct: 122 XPEFXELSTRVSSMLEAIKLKKEM 145
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 5e-06
Identities = 40/320 (12%), Positives = 96/320 (30%), Gaps = 40/320 (12%)
Query: 22 LQQFGKTLNIKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDA 81
L + +L+ K F + + + + + L + + + ++AL+ L
Sbjct: 24 LMEGENSLDDFEDKVFYRTEFQNREFK--ATMCNLLAYLKHLKGQNEAALECLRKAEELI 81
Query: 82 SPCTFTKLE----------GLMFKVNNEYDSALKHL----TLCLIDASPCTFTKLEVRFH 127
+ E ++ ++ +C +SP E+
Sbjct: 82 QQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCE 141
Query: 128 --IAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETL 185
L + + AK +E+ L++ P + + L + +D
Sbjct: 142 EGWTRLKCGGNQNERAKVCFEKALEKK--PKN--PEFTSGLAIASYRLDNWPPSQ----N 193
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAV----GKVHDAFLAYRNSVEKSEGNADTWCSI 241
AI L+++I +P + LL + + + ++EK+ G D S
Sbjct: 194 AIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSA 253
Query: 242 GNKDFSNNSNREDYHQALNKYRDLGDFLVIN-NIPTSNNNRQCYNSYSTSIASCKHINNN 300
+++ +A+ + L N + Y + ++ N
Sbjct: 254 AKF----YRRKDEPDKAIELLKKA---LEYIPNNAYLHCQIG--CCYRAKVFQVMNLREN 304
Query: 301 KDFSNNSNREDYHQALNKYR 320
+ E A+ +
Sbjct: 305 GMYGKRKLLELIGHAVAHLK 324
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 2e-05
Identities = 35/256 (13%), Positives = 72/256 (28%), Gaps = 58/256 (22%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL------------- 78
+ K ++ L P +V ++ +E D A++ L L
Sbjct: 231 EGEKLVEEALEKAPGV---TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQI 287
Query: 79 -------IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHL 131
+ K+ A+ HL +A+ V +A L
Sbjct: 288 GCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKA-DEAND---NLFRVCSILASL 343
Query: 132 HEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQ 191
H + +Y+ A+ +++ +L K + + G + + E AIH
Sbjct: 344 HALADQYEEAEYYFQKEF-SKELTPVAKQLLHLRYG------NFQLYQMKCEDKAIHHFI 396
Query: 192 KSIEADPKS------------------------GQSLYLLGRCFAAVGKVHDAFLAYRNS 227
+ ++ + KS ++L++L K+ A
Sbjct: 397 EGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERG 456
Query: 228 VEKSEGNADTWCSIGN 243
+E G
Sbjct: 457 LESGSLIPSASSWNGE 472
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 9e-06
Identities = 16/104 (15%), Positives = 31/104 (29%), Gaps = 11/104 (10%)
Query: 126 FHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETL 185
A ++E + +++ P + R LG ++ ++ L
Sbjct: 21 MEEGLSMLKLANLAEAALAFEAVCQKE--PER--EEAWRSLGLTQA-------ENEKDGL 69
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVE 229
AI L + DPK L + A + R +
Sbjct: 70 AIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLL 113
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 1e-05
Identities = 12/78 (15%), Positives = 29/78 (37%), Gaps = 4/78 (5%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKD 245
A + + +P+ ++ LG A K A +A ++ + ++
Sbjct: 36 AALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAV-- 93
Query: 246 FSNNSNREDYHQALNKYR 263
+++N + + AL R
Sbjct: 94 --SHTNEHNANAALASLR 109
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 46.3 bits (109), Expect = 9e-06
Identities = 22/141 (15%), Positives = 50/141 (35%), Gaps = 15/141 (10%)
Query: 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHR 182
+ ++A++ Q + A Y + L+ P A L + L E
Sbjct: 10 DSLNNLANIKREQGNIEEAVRLYRKALEVF--PEF--AAAHSNLASVLQQQGKLQE---- 61
Query: 183 ETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242
A+ +++I P + +G + V A Y +++ + AD ++
Sbjct: 62 ---ALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLA 118
Query: 243 NKDFSNNSNREDYHQALNKYR 263
+ + + + +A+ YR
Sbjct: 119 S----IHKDSGNIPEAIASYR 135
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 2e-05
Identities = 23/225 (10%), Positives = 51/225 (22%), Gaps = 20/225 (8%)
Query: 23 QQFGKTLNIKAIKTFQQLLYVDPSYLRANEV----HLRLGLMFKVNNEYDSALKHLTLCL 78
Q+ ++A+ T L P L ++ + + + +AL L L
Sbjct: 8 HQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNL 67
Query: 79 IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKY 138
+ L L +P ++ +
Sbjct: 68 TPEQVVAIASH-DGGKQALETVQRLLPVLCQA-HGLTP---QQVVAIASHDGGKQALETV 122
Query: 139 KTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADP 198
+ Q P ++T+ + L ++ P
Sbjct: 123 QRLLPVLCQAHGLT--PEQ--VVAIASHDGGKQALETVQA-------LLPVLCQAHGLTP 171
Query: 199 KSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243
+ ++ G A+ V + + S G
Sbjct: 172 EQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGG 216
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 7e-04
Identities = 21/234 (8%), Positives = 46/234 (19%), Gaps = 25/234 (10%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLT--LCLIDASPCTFTKL 89
+ + Q + P + A + L L L
Sbjct: 90 RLLPVLCQAHGLTPQQVVA---IASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASH 146
Query: 90 EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLL 149
+ + L L +P ++ + + Q
Sbjct: 147 -DGGKQALETVQALLPVLC-QAHGLTP---EQVVAIASNGGGKQALETVQRLLPVLCQAH 201
Query: 150 KEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGR 209
P G ++T+ + L ++ P+ ++ G
Sbjct: 202 GLT--PQQ--VVAIASNGGGKQALETVQR-------LLPVLCQAHGLTPQQVVAIASNGG 250
Query: 210 CFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYR 263
A+ V + + S E + L
Sbjct: 251 GKQALETVQRLLPVLCQAHGLTPQQVVAIASNSG----GKQALETVQRLLPVLC 300
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 21/190 (11%), Positives = 50/190 (26%), Gaps = 19/190 (10%)
Query: 131 LHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCL 190
+ +Y++ + ++ + G L A+
Sbjct: 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPN-------AVLLF 87
Query: 191 QKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNS 250
+ +++ DPK ++ LG A + A A R +E N ++ + +
Sbjct: 88 EAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAV----SFT 143
Query: 251 NREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNRE 310
N QA RD + P + + + +
Sbjct: 144 NESLQRQACEILRD-----WLRYTP---AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195
Query: 311 DYHQALNKYR 320
+ + +
Sbjct: 196 LFLEVKELFL 205
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 7e-05
Identities = 32/212 (15%), Positives = 62/212 (29%), Gaps = 34/212 (16%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEG 91
AI ++ L + P + L + F + A + L L
Sbjct: 116 LAISALRRCLELKPDNQ---TALMALAVSFTNESLQRQACEILRDWL------------- 159
Query: 92 LMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKE 151
+ Y + A L I + K+ + ++
Sbjct: 160 ---RYTPAYAHLVTPAEEGAGGAG------LGPSKRILGSLLSDSLFLEVKELFLAAVRL 210
Query: 152 DDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCF 211
D P + D+ LG +++ + A+ C ++ P LG
Sbjct: 211 D--PTSIDPDVQCGLGVLFNLSGEYDK-------AVDCFTAALSVRPNDYLLWNKLGATL 261
Query: 212 AAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243
A + +A AYR ++E G + ++G
Sbjct: 262 ANGNQSEEAVAAYRRALELQPGYIRSRYNLGI 293
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 3e-04
Identities = 36/239 (15%), Positives = 67/239 (28%), Gaps = 55/239 (23%)
Query: 33 AIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGL 92
A+ F+ + DP ++ E LG N + A+ L CL
Sbjct: 83 AVLLFEAAVQQDPKHM---EAWQYLGTTQAENEQELLAISALRRCL-------------- 125
Query: 93 MFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLK-- 150
++ + +AL L + + + + A + L+
Sbjct: 126 --ELKPDNQTALMALAVSFTN---------------------ESLQRQACEILRDWLRYT 162
Query: 151 ---EDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQS--LY 205
+ + LG + +L S ++ DP S
Sbjct: 163 PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFL-EVKELFLAAVRLDPTSIDPDVQC 221
Query: 206 LLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNR-----EDYHQAL 259
LG F G+ A + ++ + W +G N N+ Y +AL
Sbjct: 222 GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGAT--LANGNQSEEAVAAYRRAL 278
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 3e-05
Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 11/96 (11%)
Query: 141 AKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS 200
+ E +L + + + LG Y + A+ L+ +++ DP
Sbjct: 4 ITERLEAMLAQG--TDN--MLLRFTLGKTY-----AEHEQFDA--ALPHLRAALDFDPTY 52
Query: 201 GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNAD 236
+ LG+ G A A+ + + ++ D
Sbjct: 53 SVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGD 88
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 3e-05
Identities = 22/143 (15%), Positives = 40/143 (27%), Gaps = 15/143 (10%)
Query: 126 FHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETL 185
A ++E + + P + R LG ++ ++ L
Sbjct: 25 MEEGLSMLKLANLAEAALAFEAVCQAA--PER--EEAWRSLGLTQA-------ENEKDGL 73
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKD 245
AI L + DPK L + A + R + D
Sbjct: 74 AIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQAD 133
Query: 246 FS----NNSNREDYHQALNKYRD 264
N + + + A N+YR+
Sbjct: 134 VDIDDLNVQSEDFFFAAPNEYRE 156
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 4e-04
Identities = 32/214 (14%), Positives = 63/214 (29%), Gaps = 40/214 (18%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEG 91
AI +DP + VH L + + ++AL L L
Sbjct: 73 LAIIALNHARMLDPKDI---AVHAALAVSHTNEHNANAALASLRAWL------------- 116
Query: 92 LMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQ--LL 149
+Y+ +D + F +Y+ + +
Sbjct: 117 ---LSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFA------APNEYRECRTLLHAALEM 167
Query: 150 KEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGR 209
+D +H LG +Y+ + A L++++E P Q LG
Sbjct: 168 NPNDAQLHA------SLGVLYNLSNNYDS-------AAANLRRAVELRPDDAQLWNKLGA 214
Query: 210 CFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243
A + +A AY +++ + G ++
Sbjct: 215 TLANGNRPQEALDAYNRALDINPGYVRVMYNMAV 248
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 4e-05
Identities = 28/197 (14%), Positives = 56/197 (28%), Gaps = 28/197 (14%)
Query: 90 EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLL 149
E + ++ K + F F + E +
Sbjct: 37 ENQEAQNQVTVSASEKGYYFHTENP----FKDWPGAFEEGLKRLKEGDLPVTILFMEAAI 92
Query: 150 KEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGR 209
+D P A+ + LG + E AI LQ+ +E P + ++L L
Sbjct: 93 LQD--PGD--AEAWQFLGITQAENE-------NEQAAIVALQRCLELQPNNLKALMALAV 141
Query: 210 CFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSN-------------REDYH 256
+ DA A +N ++++ + +E Y
Sbjct: 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYL 201
Query: 257 QALNKYRDLGDFLVINN 273
+A ++ D+ D +
Sbjct: 202 EAAHQNGDMIDPDLQTG 218
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 3e-04
Identities = 31/212 (14%), Positives = 67/212 (31%), Gaps = 39/212 (18%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEG 91
AI Q+ L + P+ L + + L + + + A + L +
Sbjct: 117 AAIVALQRCLELQPNNL---KALMALAVSYTNTSHQQDACEALKNWI------------- 160
Query: 92 LMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKE 151
K N +Y +K+ + + ++ + K+ Y + +
Sbjct: 161 ---KQNPKYKYLVKNKKGSPGLTRRMSKSPVD-----------SSVLEGVKELYLEAAHQ 206
Query: 152 DDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCF 211
+ + D+ LG ++H AI ++ P+ LG
Sbjct: 207 N--GDMIDPDLQTGLGVLFHLSGEFNR-------AIDAFNAALTVRPEDYSLWNRLGATL 257
Query: 212 AAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243
A + +A AY ++E G + ++G
Sbjct: 258 ANGDRSEEAVEAYTRALEIQPGFIRSRYNLGI 289
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 2e-04
Identities = 31/235 (13%), Positives = 63/235 (26%), Gaps = 14/235 (5%)
Query: 52 EVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLC 110
+V R NN Y A++ + + + +YD A K +
Sbjct: 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIE-T 62
Query: 111 LIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMY 170
T K + + + + A Y+ + D D+ Q+G +
Sbjct: 63 YFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD--TTR--LDMYGQIGSYF 118
Query: 171 HCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEK 230
+ LAI ++K I + Y LG+ + + A ++ +E
Sbjct: 119 Y-------NKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL 171
Query: 231 SEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYN 285
+ + A Y L + + +
Sbjct: 172 KPNIYIGYLWRARA-NAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANE 225
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 3e-04
Identities = 13/145 (8%), Positives = 38/145 (26%), Gaps = 9/145 (6%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKD 245
AI Q +++ D +G F G A + + + + +G
Sbjct: 93 AIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAY 152
Query: 246 FSNNSNRE---DYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCK---HINN 299
+ N + + + L + ++ +N + + + +
Sbjct: 153 YYNKEYVKADSSFVKVLELKPN--IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA 210
Query: 300 NKDFSNNSNREDYHQAL-NKYRDLG 323
+ ++ + Y
Sbjct: 211 PGGAKYKDELIEANEYIAYYYTINR 235
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 3e-04
Identities = 21/159 (13%), Positives = 53/159 (33%), Gaps = 25/159 (15%)
Query: 127 HIAHLHEVQRKYKTAKDSYEQLL----KEDDLPVHLKADICRQLGWMYHCIDTLGE---- 178
+ +++ ++ A+ S++ L K D + Q+G + G
Sbjct: 31 MLGYVYAFMDRFDEARASFQALQQQAQKSGDHT--AEHRALHQVGMVER---MAGNWDAA 85
Query: 179 -KSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSE----- 232
+ E + E + + Y + G + A Y S+ ++
Sbjct: 86 RRCFLEERELL--ASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQ 143
Query: 233 -GNADTWCSIGN--KDFSNNSN-REDYHQALNKYRDLGD 267
A + +G+ + N ++ + +A + + +L D
Sbjct: 144 VAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELED 182
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 39.8 bits (94), Expect = 5e-04
Identities = 16/123 (13%), Positives = 35/123 (28%), Gaps = 11/123 (8%)
Query: 141 AKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS 200
+ + H+ + Q + A K+IE + +
Sbjct: 4 SHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEK-------AAEAFTKAIEENKED 56
Query: 201 GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALN 260
++V ++ A Y ++E A + GN +E Y +A +
Sbjct: 57 AIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGN----VYVVKEMYKEAKD 112
Query: 261 KYR 263
+
Sbjct: 113 MFE 115
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 37.2 bits (87), Expect = 7e-04
Identities = 13/73 (17%), Positives = 28/73 (38%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKD 245
A+ ++ +E DP + Y LG+ + + + DA Y +E + +D
Sbjct: 26 ALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQD 85
Query: 246 FSNNSNREDYHQA 258
+ ++H
Sbjct: 86 AKLKAEGLEHHHH 98
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 39.2 bits (92), Expect = 9e-04
Identities = 8/58 (13%), Positives = 26/58 (44%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243
A ++ ++++DPK+ + + + + A ++R ++ +A+ + G
Sbjct: 27 ATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGW 84
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 324 | |||
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 100.0 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 100.0 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 100.0 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 100.0 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 100.0 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.98 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.97 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.97 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.97 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.97 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.97 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.97 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.97 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.97 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.97 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.97 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.97 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.97 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.97 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.97 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.96 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.96 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.96 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.95 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.95 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.95 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.94 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.94 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.94 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.94 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.94 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.94 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.94 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.94 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.94 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.94 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.93 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.93 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.93 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.93 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.93 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.93 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.93 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.92 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.92 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.92 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.92 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.92 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.91 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.91 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.91 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.91 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.91 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.91 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.91 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.9 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.9 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.9 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.9 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.89 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.89 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.89 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.88 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.88 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.88 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.87 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.87 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.87 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.87 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.87 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.87 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.86 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.86 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.85 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.85 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.85 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.85 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.84 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.84 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.84 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.84 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.84 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.83 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.83 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.81 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.81 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.81 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.81 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.8 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.8 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.79 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.79 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.79 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.78 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.78 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.78 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.77 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.77 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.76 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.76 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.76 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.75 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.75 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.75 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.74 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.74 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.73 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.72 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.72 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.72 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.71 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.71 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.7 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.7 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.7 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.69 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.69 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.69 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.68 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.68 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.68 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.68 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.68 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.67 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.67 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.67 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.67 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.66 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.66 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.66 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.66 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.65 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.65 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.65 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.64 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.64 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.64 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.63 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.63 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.62 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.62 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.62 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.61 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.61 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.61 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.6 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.59 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.59 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.59 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.58 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.58 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.57 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.57 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.57 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.56 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.56 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.55 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.55 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.55 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.54 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.54 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.54 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.54 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.54 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.54 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.52 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.52 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.52 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.52 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.52 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.5 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.49 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.49 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.49 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.48 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.48 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.47 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.47 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.46 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.46 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.45 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.44 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.44 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.42 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.4 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.39 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.35 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.34 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.3 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.24 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.23 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.21 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.19 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 99.14 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 99.12 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 99.12 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.11 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 99.08 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 99.02 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 99.02 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 99.01 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 99.0 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.97 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.95 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.95 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.84 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.84 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.78 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.78 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.75 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.72 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.71 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.7 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.59 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.54 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.46 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.46 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.43 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 98.31 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.1 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.07 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 98.01 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 97.99 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.92 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 97.78 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.77 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.67 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.61 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 97.21 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 97.15 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 97.11 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 96.98 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.67 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 96.62 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 96.47 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.44 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 96.29 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 96.18 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 95.59 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 95.29 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 95.21 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 95.15 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 94.92 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.78 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 94.74 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 94.73 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 94.52 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 94.27 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 94.25 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 94.13 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 93.63 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.63 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 92.98 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 92.95 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 92.27 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 91.04 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 90.12 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 89.56 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 89.4 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 84.65 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 83.84 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 82.73 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 81.03 |
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-35 Score=255.17 Aligned_cols=291 Identities=13% Similarity=0.156 Sum_probs=219.1
Q ss_pred hhhhccccccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCch
Q psy8160 9 LVEGIVTSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCT 85 (324)
Q Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~ 85 (324)
+...+.++..+..+|.+....+ ++|++.|+++++++|+. ..++..+|.++...|++++|+..|++++ .+|+...
T Consensus 60 ~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 136 (388)
T 1w3b_A 60 IKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF---IDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYC 136 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTH
T ss_pred HhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence 3344445555566666555554 77777777777777653 3467777777777777777777777777 7777777
Q ss_pred hhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHH
Q psy8160 86 FTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQ 165 (324)
Q Consensus 86 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 165 (324)
++..+|.++...|++++|++.|++++...|... .++..+|.++...|++++|+..|++++..+ |+. ..++..
T Consensus 137 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~ 208 (388)
T 1w3b_A 137 VRSDLGNLLKALGRLEEAKACYLKAIETQPNFA----VAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PNF--LDAYIN 208 (388)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTC--HHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCc--HHHHHH
Confidence 777777777777777777777777777766654 677777777777888888888888887777 766 347777
Q ss_pred HHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHH
Q psy8160 166 LGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKD 245 (324)
Q Consensus 166 l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 245 (324)
+|.++.. .+++++|+..+++++..+|+++.++..+|.++...|++++|+..|++++..+|+++.+|..+|.++
T Consensus 209 lg~~~~~-------~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 281 (388)
T 1w3b_A 209 LGNVLKE-------ARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANAL 281 (388)
T ss_dssp HHHHHHT-------TTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHH
T ss_pred HHHHHHH-------cCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 7777755 447778888888888888888888888888888888888888888888888888888888888888
Q ss_pred hhcCCCHHHHHHHH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHH
Q psy8160 246 FSNNSNREDYHQAL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQ 314 (324)
Q Consensus 246 ~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 314 (324)
...|+ +++|+..| .+|..+|.++...|++++ |+..|+++++.+|+++.+..+++.+. ...|++++
T Consensus 282 ~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~--A~~~~~~al~~~p~~~~~~~~l~~~~-~~~g~~~~ 357 (388)
T 1w3b_A 282 KEKGS-VAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEE--AVRLYRKALEVFPEFAAAHSNLASVL-QQQGKLQE 357 (388)
T ss_dssp HHHSC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHH--HHHHHHHHTTSCTTCHHHHHHHHHHH-HTTTCCHH
T ss_pred HHcCC-HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHH--HHHHHHHHHhcCCCcHHHHHHHHHHH-HHcCCHHH
Confidence 88888 88888877 677788888888888888 88888888888888887777776653 35677888
Q ss_pred HHHHHhh
Q psy8160 315 ALNKYRD 321 (324)
Q Consensus 315 a~~~~~~ 321 (324)
|+..|++
T Consensus 358 A~~~~~~ 364 (388)
T 1w3b_A 358 ALMHYKE 364 (388)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8777764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-34 Score=250.99 Aligned_cols=295 Identities=16% Similarity=0.155 Sum_probs=267.0
Q ss_pred HHHhhhhccccccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCC
Q psy8160 6 QKNLVEGIVTSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDAS 82 (324)
Q Consensus 6 ~~~~~~~~~~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~ 82 (324)
++.+...+.++.....++.+....+ ++|...+.++++.+|. ..++++.+|.++...|++++|+..|++++ .+|+
T Consensus 23 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 99 (388)
T 1w3b_A 23 MQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL---LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD 99 (388)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcc
Confidence 3444455556666666666655555 9999999999999986 45689999999999999999999999999 9999
Q ss_pred CchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHH
Q psy8160 83 PCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADI 162 (324)
Q Consensus 83 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 162 (324)
+..++..+|.++...|++++|+..|++++...|... .++..+|.++...|++++|+..|++++..+ |+. +.+
T Consensus 100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~ 171 (388)
T 1w3b_A 100 FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLY----CVRSDLGNLLKALGRLEEAKACYLKAIETQ--PNF--AVA 171 (388)
T ss_dssp CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCT----HHHHHHHHHHHTTSCHHHHHHHHHHHHHHC--TTC--HHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCC--HHH
Confidence 999999999999999999999999999999988876 789999999999999999999999999998 887 559
Q ss_pred HHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhH
Q psy8160 163 CRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242 (324)
Q Consensus 163 ~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 242 (324)
+..+|.++.. .+++++|+..|+++++.+|.++.++..+|.++...|++++|+..|++++..+|+++.++..+|
T Consensus 172 ~~~l~~~~~~-------~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 244 (388)
T 1w3b_A 172 WSNLGCVFNA-------QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 244 (388)
T ss_dssp HHHHHHHHHT-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHH-------cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHH
Confidence 9999999976 559999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCHHHHHHHH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhccCChhh
Q psy8160 243 NKDFSNNSNREDYHQAL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNRED 311 (324)
Q Consensus 243 ~~~~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 311 (324)
.++...|+ +++|+..| .+|..+|.++...|++++ |+..|+++++.+|+++.+..+++.+. ...|+
T Consensus 245 ~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~--A~~~~~~al~~~p~~~~~~~~l~~~~-~~~g~ 320 (388)
T 1w3b_A 245 CVYYEQGL-IDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAE--AEDCYNTALRLCPTHADSLNNLANIK-REQGN 320 (388)
T ss_dssp HHHHHTTC-HHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHH--HHHHHHHHHHHCTTCHHHHHHHHHHH-HTTTC
T ss_pred HHHHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH--HHHHHHHHHhhCcccHHHHHHHHHHH-HHcCC
Confidence 99999999 99999999 789999999999999999 99999999999999999988887664 46789
Q ss_pred HHHHHHHHhhc
Q psy8160 312 YHQALNKYRDL 322 (324)
Q Consensus 312 ~~~a~~~~~~~ 322 (324)
+++|+..|+++
T Consensus 321 ~~~A~~~~~~a 331 (388)
T 1w3b_A 321 IEEAVRLYRKA 331 (388)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-32 Score=230.04 Aligned_cols=278 Identities=10% Similarity=-0.053 Sum_probs=249.3
Q ss_pred HHhhhhccccccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCC
Q psy8160 7 KNLVEGIVTSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASP 83 (324)
Q Consensus 7 ~~~~~~~~~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~ 83 (324)
+.+.....++++...++...+..+ ++|++.|+++++.+|.. ..++..++.++...|++++|+..+++++ .+|.+
T Consensus 13 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 89 (330)
T 3hym_B 13 ESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFH---ASCLPVHIGTLVELNKANELFYLSHKLVDLYPSN 89 (330)
T ss_dssp -------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---TTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---hhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC
Confidence 344455667777777777655555 99999999999999874 4467889999999999999999999999 99999
Q ss_pred chhhHHHHHHHHhcc-cHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHH
Q psy8160 84 CTFTKLEGLMFKVNN-EYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADI 162 (324)
Q Consensus 84 ~~~~~~la~~~~~~~-~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 162 (324)
..++..+|.++...| ++++|+..|++++...|... .++..+|.++...|++++|+..|++++... |+.. .+
T Consensus 90 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~--~~ 161 (330)
T 3hym_B 90 PVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYG----PAWIAYGHSFAVESEHDQAMAAYFTAAQLM--KGCH--LP 161 (330)
T ss_dssp THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCT----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCS--HH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhc--cccH--HH
Confidence 999999999999999 99999999999999888776 789999999999999999999999999999 7764 48
Q ss_pred HHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC---------CC
Q psy8160 163 CRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKS---------EG 233 (324)
Q Consensus 163 ~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---------p~ 233 (324)
+..+|.++.. .+++++|+.+++++++.+|.++.++..+|.++...|++++|+..+++++... |.
T Consensus 162 ~~~l~~~~~~-------~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 234 (330)
T 3hym_B 162 MLYIGLEYGL-------TNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDK 234 (330)
T ss_dssp HHHHHHHHHH-------TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTT
T ss_pred HHHHHHHHHH-------HhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccH
Confidence 8889999977 5599999999999999999999999999999999999999999999999986 77
Q ss_pred CHHHHHHhHHHHhhcCCCHHHHHHHH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchh
Q psy8160 234 NADTWCSIGNKDFSNNSNREDYHQAL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKD 302 (324)
Q Consensus 234 ~~~~~~~lg~~~~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 302 (324)
.+.+|..+|.++...|+ +++|+..| .+|..+|.++...|++++ |+.+|+++++++|+++.+...++
T Consensus 235 ~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~--A~~~~~~al~~~p~~~~~~~~l~ 311 (330)
T 3hym_B 235 WEPLLNNLGHVCRKLKK-YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFEN--AVDYFHTALGLRRDDTFSVTMLG 311 (330)
T ss_dssp CCHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHH--HHHHHHTTTTTCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC-HHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHH--HHHHHHHHHccCCCchHHHHHHH
Confidence 78999999999999999 99999999 889999999999999999 99999999999999999988887
Q ss_pred hhc
Q psy8160 303 FSN 305 (324)
Q Consensus 303 ~~~ 305 (324)
...
T Consensus 312 ~~~ 314 (330)
T 3hym_B 312 HCI 314 (330)
T ss_dssp HHH
T ss_pred HHH
Confidence 644
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-32 Score=232.01 Aligned_cols=284 Identities=12% Similarity=0.098 Sum_probs=239.1
Q ss_pred cccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHH
Q psy8160 16 SVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGL 92 (324)
Q Consensus 16 ~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~ 92 (324)
++.+..+|...+..+ ++|++.|+++++.+|+ ...+++.+|.++...|++++|+..|++++ .+|.+..++..+|.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 79 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPD---NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 344555666555555 9999999999999886 35688999999999999999999999999 89999999999999
Q ss_pred HHHhcccHHHHHHHHHHHHHhcC---CCcccHHHHHHHH------------HHHHHHhhcHHHHHHHHHHHHhcCCCCCc
Q psy8160 93 MFKVNNEYDSALKHLTLCLIDAS---PCTFTKLEVRFHI------------AHLHEVQRKYKTAKDSYEQLLKEDDLPVH 157 (324)
Q Consensus 93 ~~~~~~~~~~A~~~~~~~l~~~~---~~~~~~~~~~~~l------------a~~~~~~~~~~~A~~~~~~al~~~~~~~~ 157 (324)
++...|++++|+..|++++...| ... .++..+ |.++...|++++|+..+++++... |.+
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~ 153 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEK----EAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC--VWD 153 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChH----HHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCc
Confidence 99999999999999999998777 433 444444 788889999999999999999988 777
Q ss_pred hhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHH
Q psy8160 158 LKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADT 237 (324)
Q Consensus 158 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 237 (324)
..++..+|.++.. .+++++|+..++++++..|.++.+++.+|.++...|++++|+..|++++..+|+++.+
T Consensus 154 --~~~~~~~~~~~~~-------~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 224 (359)
T 3ieg_A 154 --AELRELRAECFIK-------EGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRC 224 (359)
T ss_dssp --HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred --hHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHH
Confidence 4588899988876 4589999999999999999999999999999999999999999999999999999887
Q ss_pred HHH------------hHHHHhhcCCCHHHHHHHH---------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhc
Q psy8160 238 WCS------------IGNKDFSNNSNREDYHQAL---------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTS 290 (324)
Q Consensus 238 ~~~------------lg~~~~~~~~~~~~A~~~~---------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~ 290 (324)
+.. +|.++...|+ +++|+..| .++..+|.++...|++++ |+..|+++++.
T Consensus 225 ~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~--A~~~~~~~~~~ 301 (359)
T 3ieg_A 225 FAHYKQVKKLNKLIESAEELIRDGR-YTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVE--AIRICSEVLQM 301 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHH--HHHHHHHHHHh
Confidence 653 3788999999 99999888 446778999999999999 99999999999
Q ss_pred CCChhhhhhchhhhccCChhhHHHHHHHHhh
Q psy8160 291 IASCKHINNNKDFSNNSNREDYHQALNKYRD 321 (324)
Q Consensus 291 ~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 321 (324)
+|+++.+...++.+. ...|++++|+..|+.
T Consensus 302 ~~~~~~~~~~~~~~~-~~~g~~~~A~~~~~~ 331 (359)
T 3ieg_A 302 EPDNVNALKDRAEAY-LIEEMYDEAIQDYEA 331 (359)
T ss_dssp CTTCHHHHHHHHHHH-HHTTCHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHH-HHcCCHHHHHHHHHH
Confidence 999988888887764 356888888888765
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-31 Score=237.88 Aligned_cols=299 Identities=11% Similarity=0.087 Sum_probs=236.5
Q ss_pred HHHHhhhhccccccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCC
Q psy8160 5 IQKNLVEGIVTSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDA 81 (324)
Q Consensus 5 ~~~~~~~~~~~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~ 81 (324)
+.+.+...+.++..+..+|...+..+ ++|+..|+++++.+|+ ...+++.+|.++...|++++|+..|++++ .+|
T Consensus 15 ~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 91 (450)
T 2y4t_A 15 TENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD---NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM 91 (450)
T ss_dssp --------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred ccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 34445556666666667776555555 8999999999998876 35688999999999999999999999999 899
Q ss_pred CCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCc---ccH--------HHHHHHHHHHHHHhhcHHHHHHHHHHHHh
Q psy8160 82 SPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCT---FTK--------LEVRFHIAHLHEVQRKYKTAKDSYEQLLK 150 (324)
Q Consensus 82 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~--------~~~~~~la~~~~~~~~~~~A~~~~~~al~ 150 (324)
.+..++..+|.++...|++++|+..|++++...|... ... ...+..+|.++...|++++|+..|++++.
T Consensus 92 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 171 (450)
T 2y4t_A 92 DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILE 171 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9998999999999999999999999999988776543 110 01144457778888999999999999888
Q ss_pred cCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q psy8160 151 EDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEK 230 (324)
Q Consensus 151 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 230 (324)
.. |.+ ..++..+|.++.. .|++++|+..|+++++.+|.++.+|..+|.++...|++++|+..|++++..
T Consensus 172 ~~--~~~--~~~~~~l~~~~~~-------~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 172 VC--VWD--AELRELRAECFIK-------EGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 240 (450)
T ss_dssp HC--TTC--HHHHHHHHHHHHH-------TTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hC--CCC--hHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88 776 4488888888866 448888888888888888888888888888888888888888888888888
Q ss_pred CCCCHHHHHHh------------HHHHhhcCCCHHHHHHHH---------------HHHHhhHHHHHHcCCCCcchHHHH
Q psy8160 231 SEGNADTWCSI------------GNKDFSNNSNREDYHQAL---------------NKYRDLGDFLVINNIPTSNNNRQC 283 (324)
Q Consensus 231 ~p~~~~~~~~l------------g~~~~~~~~~~~~A~~~~---------------~~~~~lg~~~~~~~~~~~~~A~~~ 283 (324)
+|+++..+..+ |.++...|+ +++|+..| .++..+|.++...|++++ |+..
T Consensus 241 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~--A~~~ 317 (450)
T 2y4t_A 241 DQDHKRCFAHYKQVKKLNKLIESAEELIRDGR-YTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVE--AIRV 317 (450)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHH--HHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHH--HHHH
Confidence 88888877666 888888888 88888888 367888888888888888 8888
Q ss_pred HHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHhh
Q psy8160 284 YNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYRD 321 (324)
Q Consensus 284 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 321 (324)
|+++++.+|+++.++..++.+.. ..+++++|+..|+.
T Consensus 318 ~~~a~~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~ 354 (450)
T 2y4t_A 318 CSEVLQMEPDNVNALKDRAEAYL-IEEMYDEAIQDYET 354 (450)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHH-HhcCHHHHHHHHHH
Confidence 88888888888888887776653 46788888887765
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-30 Score=223.99 Aligned_cols=279 Identities=11% Similarity=0.072 Sum_probs=250.4
Q ss_pred HHHHhhhhccccccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCC
Q psy8160 5 IQKNLVEGIVTSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDA 81 (324)
Q Consensus 5 ~~~~~~~~~~~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~ 81 (324)
+++.+...+.++..+..+|.+....+ ++|+..|+++++.+|+. ..+++.+|.++...|++++|+..|++++ .+|
T Consensus 26 ~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 102 (359)
T 3ieg_A 26 FHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDF---TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 102 (359)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCC
T ss_pred HHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---chHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence 45556666777778888888777666 99999999999999874 4689999999999999999999999999 999
Q ss_pred ---CCchhhHHH------------HHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHH
Q psy8160 82 ---SPCTFTKLE------------GLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYE 146 (324)
Q Consensus 82 ---~~~~~~~~l------------a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 146 (324)
.+...+..+ |.++...|++++|++.+++++...|... .++..+|.++...|++++|+..++
T Consensus 103 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~A~~~~~ 178 (359)
T 3ieg_A 103 SEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDA----ELRELRAECFIKEGEPRKAISDLK 178 (359)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCch----HHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888777766 7899999999999999999999988775 889999999999999999999999
Q ss_pred HHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHH------------HHHHHHHHc
Q psy8160 147 QLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLY------------LLGRCFAAV 214 (324)
Q Consensus 147 ~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~------------~lg~~~~~~ 214 (324)
+++... |.+ ..++..+|.++.. .+++++|+..++++++.+|.++.++. .+|.++...
T Consensus 179 ~~~~~~--~~~--~~~~~~la~~~~~-------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 247 (359)
T 3ieg_A 179 AASKLK--SDN--TEAFYKISTLYYQ-------LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRD 247 (359)
T ss_dssp HHHTTC--SCC--HHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhC--CCC--HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999998 887 4599999999977 45999999999999999999987654 448889999
Q ss_pred CCHHHHHHHHHHHHccCCCCHH----HHHHhHHHHhhcCCCHHHHHHHH-----------HHHHhhHHHHHHcCCCCcch
Q psy8160 215 GKVHDAFLAYRNSVEKSEGNAD----TWCSIGNKDFSNNSNREDYHQAL-----------NKYRDLGDFLVINNIPTSNN 279 (324)
Q Consensus 215 ~~~~~A~~~~~~al~~~p~~~~----~~~~lg~~~~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~~~ 279 (324)
|++++|+..+++++...|+++. ++..+|.++...|+ +++|+..| .+|..+|.++...|++++
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-- 324 (359)
T 3ieg_A 248 GRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEK-PVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDE-- 324 (359)
T ss_dssp TCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH--
T ss_pred CCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHH--
Confidence 9999999999999999999975 46679999999999 99999999 889999999999999999
Q ss_pred HHHHHHHhhhcCCChhhhhhchhhh
Q psy8160 280 NRQCYNSYSTSIASCKHINNNKDFS 304 (324)
Q Consensus 280 A~~~~~~al~~~p~~~~~~~~l~~~ 304 (324)
|+..|+++++++|+++.++..+..+
T Consensus 325 A~~~~~~a~~~~p~~~~~~~~l~~~ 349 (359)
T 3ieg_A 325 AIQDYEAAQEHNENDQQIREGLEKA 349 (359)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHH
Confidence 9999999999999999988777654
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-30 Score=230.01 Aligned_cols=277 Identities=12% Similarity=0.084 Sum_probs=248.1
Q ss_pred HHHHhhhhccccccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCC
Q psy8160 5 IQKNLVEGIVTSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDA 81 (324)
Q Consensus 5 ~~~~~~~~~~~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~ 81 (324)
+++.+...+.++..+..++......+ ++|+..|+++++.+|+. ..+++.+|.++...|++++|+..|++++ .+|
T Consensus 49 ~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 125 (450)
T 2y4t_A 49 FHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF---TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 125 (450)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC
T ss_pred HHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 34455555666777777777666666 99999999999999874 5689999999999999999999999999 999
Q ss_pred CCc---hhhHHH------------HHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHH
Q psy8160 82 SPC---TFTKLE------------GLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYE 146 (324)
Q Consensus 82 ~~~---~~~~~l------------a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 146 (324)
.+. ..+..+ |.++...|++++|+..|++++...|... .++..+|.++...|++++|+..|+
T Consensus 126 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~ 201 (450)
T 2y4t_A 126 SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDA----ELRELRAECFIKEGEPRKAISDLK 201 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCGGGGHHHHH
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHCCCHHHHHHHHH
Confidence 987 665544 6679999999999999999999888765 889999999999999999999999
Q ss_pred HHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHH------------HHHHHHc
Q psy8160 147 QLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLL------------GRCFAAV 214 (324)
Q Consensus 147 ~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l------------g~~~~~~ 214 (324)
+++..+ |.+ ..++..+|.++.. .|++++|+..+++++..+|.++..+..+ |.++...
T Consensus 202 ~~~~~~--~~~--~~~~~~l~~~~~~-------~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (450)
T 2y4t_A 202 AASKLK--NDN--TEAFYKISTLYYQ-------LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRD 270 (450)
T ss_dssp HHHHHH--CSC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhC--CCC--HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999998 877 4599999999977 5599999999999999999999887766 9999999
Q ss_pred CCHHHHHHHHHHHHccCCCCHH----HHHHhHHHHhhcCCCHHHHHHHH-----------HHHHhhHHHHHHcCCCCcch
Q psy8160 215 GKVHDAFLAYRNSVEKSEGNAD----TWCSIGNKDFSNNSNREDYHQAL-----------NKYRDLGDFLVINNIPTSNN 279 (324)
Q Consensus 215 ~~~~~A~~~~~~al~~~p~~~~----~~~~lg~~~~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~~~ 279 (324)
|++++|+..|++++...|+++. .+..+|.++...|+ +++|+..+ .+|..+|.++...|++++
T Consensus 271 g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~-- 347 (450)
T 2y4t_A 271 GRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEK-PVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDE-- 347 (450)
T ss_dssp TCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH--
T ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHH--
Confidence 9999999999999999999854 78899999999999 99999999 789999999999999999
Q ss_pred HHHHHHHhhhcCCChhhhhhchh
Q psy8160 280 NRQCYNSYSTSIASCKHINNNKD 302 (324)
Q Consensus 280 A~~~~~~al~~~p~~~~~~~~l~ 302 (324)
|+..|+++++++|+++.+...++
T Consensus 348 A~~~~~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 348 AIQDYETAQEHNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHHHHhCcchHHHHHHHH
Confidence 99999999999999998877776
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.98 E-value=7.3e-31 Score=227.54 Aligned_cols=270 Identities=12% Similarity=0.053 Sum_probs=237.0
Q ss_pred HHHHH-HHHHHhccCCCccc-chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHH
Q psy8160 31 IKAIK-TFQQLLYVDPSYLR-ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHL 107 (324)
Q Consensus 31 ~~A~~-~~~~~l~~~p~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 107 (324)
++|++ .|.+++.+.|+.+. ....++.+|.++...|++++|+..|++++ .+|.+..++..+|.++...|++++|+..|
T Consensus 42 ~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 121 (368)
T 1fch_A 42 DDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISAL 121 (368)
T ss_dssp ----CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 88999 99999999987653 25578999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHH----------------HHHHHHH
Q psy8160 108 TLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICR----------------QLGWMYH 171 (324)
Q Consensus 108 ~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~----------------~l~~~~~ 171 (324)
++++...|... .++..+|.++...|++++|+..|++++... |.... .+. .++.++
T Consensus 122 ~~al~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~- 192 (368)
T 1fch_A 122 RRCLELKPDNQ----TALMALAVSFTNESLQRQACEILRDWLRYT--PAYAH--LVTPAEEGAGGAGLGPSKRILGSLL- 192 (368)
T ss_dssp HHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGG--GCC---------------CTTHHHH-
T ss_pred HHHHhcCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHH--HHHHHHHHhhhhcccHHHHHHHHHh-
Confidence 99999988765 899999999999999999999999999998 76543 332 345544
Q ss_pred hhhhhcccchhHHHHHHHHHHHhhhCCc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcC
Q psy8160 172 CIDTLGEKSHRETLAIHCLQKSIEADPK--SGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNN 249 (324)
Q Consensus 172 ~~~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 249 (324)
. .+++++|+..++++++.+|. ++.++..+|.++...|++++|+..|++++..+|+++.+|..+|.++...|
T Consensus 193 ~-------~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 265 (368)
T 1fch_A 193 S-------DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGN 265 (368)
T ss_dssp H-------HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred h-------cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcC
Confidence 3 45999999999999999999 89999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCCh-----------hhhhhchhhhccC
Q psy8160 250 SNREDYHQAL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASC-----------KHINNNKDFSNNS 307 (324)
Q Consensus 250 ~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~-----------~~~~~~l~~~~~~ 307 (324)
+ +++|+..| .++..+|.+|...|++++ |+..|++++++.|++ +.++..++.+. .
T Consensus 266 ~-~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~ 341 (368)
T 1fch_A 266 Q-SEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHRE--AVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLAL-S 341 (368)
T ss_dssp C-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH--HHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHH-H
T ss_pred C-HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHH-H
Confidence 9 99999999 789999999999999999 999999999999988 67777776543 3
Q ss_pred ChhhHHHHHHHHh
Q psy8160 308 NREDYHQALNKYR 320 (324)
Q Consensus 308 ~~~~~~~a~~~~~ 320 (324)
..|++++|...++
T Consensus 342 ~~g~~~~A~~~~~ 354 (368)
T 1fch_A 342 MLGQSDAYGAADA 354 (368)
T ss_dssp HHTCGGGHHHHHT
T ss_pred HhCChHhHHHhHH
Confidence 4566666665544
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=215.94 Aligned_cols=254 Identities=8% Similarity=0.018 Sum_probs=237.8
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHI 128 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~l 128 (324)
+.++++.+|..++..|++++|+..|++++ .+|.+......++.++...|++++|+..+++++...|... .+++.+
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l 96 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP----VSWFAV 96 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST----HHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH----HHHHHH
Confidence 45578999999999999999999999999 9999999999999999999999999999999999988876 889999
Q ss_pred HHHHHHhh-cHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHH
Q psy8160 129 AHLHEVQR-KYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLL 207 (324)
Q Consensus 129 a~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 207 (324)
|.++...| ++++|+..|++++..+ |.. ..++..+|.++.. .+++++|+..++++++..|.+..++..+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~--~~~--~~~~~~l~~~~~~-------~~~~~~A~~~~~~a~~~~~~~~~~~~~l 165 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE--KTY--GPAWIAYGHSFAV-------ESEHDQAMAAYFTAAQLMKGCHLPMLYI 165 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC--TTC--THHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHTTTCSHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC--Ccc--HHHHHHHHHHHHH-------ccCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 99999999 9999999999999998 877 4499999999977 5599999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH--------------------HHHHhhHH
Q psy8160 208 GRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL--------------------NKYRDLGD 267 (324)
Q Consensus 208 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~--------------------~~~~~lg~ 267 (324)
|.++...|++++|+..+++++..+|+++.++..+|.++...|+ +++|+..+ .++..+|.
T Consensus 166 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~ 244 (330)
T 3hym_B 166 GLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGE-WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGH 244 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccc-HHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 99999998 37899999
Q ss_pred HHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHhhc
Q psy8160 268 FLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYRDL 322 (324)
Q Consensus 268 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 322 (324)
+|...|++++ |+.+|+++++.+|+++.+...++.+. ...|++.+|+..|+..
T Consensus 245 ~~~~~g~~~~--A~~~~~~a~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~a 296 (330)
T 3hym_B 245 VCRKLKKYAE--ALDYHRQALVLIPQNASTYSAIGYIH-SLMGNFENAVDYFHTA 296 (330)
T ss_dssp HHHHTTCHHH--HHHHHHHHHHHSTTCSHHHHHHHHHH-HHHTCHHHHHHHHHTT
T ss_pred HHHHhcCHHH--HHHHHHHHHhhCccchHHHHHHHHHH-HHhccHHHHHHHHHHH
Confidence 9999999999 99999999999999999999888764 4578999999988764
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.7e-30 Score=222.55 Aligned_cols=245 Identities=11% Similarity=0.071 Sum_probs=211.8
Q ss_pred HHHHHHHHHhccCCCcc-cchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHH
Q psy8160 32 KAIKTFQQLLYVDPSYL-RANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTL 109 (324)
Q Consensus 32 ~A~~~~~~~l~~~p~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 109 (324)
.+...+.+.+...|..+ .....++.+|.++...|++++|+..|++++ .+|.+..++..+|.++...|++++|+..|++
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 124 (365)
T 4eqf_A 45 VTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQR 124 (365)
T ss_dssp --------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34455666666666544 335579999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHH----------HHHHHHHhhhhhccc
Q psy8160 110 CLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICR----------QLGWMYHCIDTLGEK 179 (324)
Q Consensus 110 ~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~----------~l~~~~~~~~~~~~~ 179 (324)
++...|... .++..+|.++...|++++|+..|++++... |.... ++. .+|.++..
T Consensus 125 al~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~--~~~~~~~~~~~~~~l~~~~~~------- 189 (365)
T 4eqf_A 125 CLELQPNNL----KALMALAVSYTNTSHQQDACEALKNWIKQN--PKYKY--LVKNKKGSPGLTRRMSKSPVD------- 189 (365)
T ss_dssp HHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHC--C-------------------C-------
T ss_pred HHhcCCCCH----HHHHHHHHHHHccccHHHHHHHHHHHHHhC--ccchH--HHhhhccchHHHHHHHHHHhh-------
Confidence 999988765 889999999999999999999999999988 66532 333 34667755
Q ss_pred chhHHHHHHHHHHHhhhCCc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHH
Q psy8160 180 SHRETLAIHCLQKSIEADPK--SGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQ 257 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~ 257 (324)
.+++++|+.+++++++.+|. ++.+++.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|+ +++|+.
T Consensus 190 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~ 268 (365)
T 4eqf_A 190 SSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDR-SEEAVE 268 (365)
T ss_dssp CHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHH
Confidence 56999999999999999999 899999999999999999999999999999999999999999999999999 999999
Q ss_pred HH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCCh
Q psy8160 258 AL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASC 294 (324)
Q Consensus 258 ~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (324)
.| .+|.++|.+|...|++++ |+.+|+++++++|++
T Consensus 269 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~--A~~~~~~al~~~~~~ 314 (365)
T 4eqf_A 269 AYTRALEIQPGFIRSRYNLGISCINLGAYRE--AVSNFLTALSLQRKS 314 (365)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH--HHHHHHHHHHHHHCC
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHCCCHHH--HHHHHHHHHHhCccc
Confidence 99 789999999999999999 999999999999883
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-29 Score=228.62 Aligned_cols=294 Identities=11% Similarity=0.021 Sum_probs=208.4
Q ss_pred HHHHhhhhccccccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHH-------
Q psy8160 5 IQKNLVEGIVTSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLT------- 75 (324)
Q Consensus 5 ~~~~~~~~~~~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~------- 75 (324)
+++.+...+.++..+..+|.+....+ ++|++.|+++++++|+ ...+++.+|.++...|++++|+..|+
T Consensus 48 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 124 (537)
T 3fp2_A 48 YQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD---HSKALLRRASANESLGNFTDAMFDLSVLSLNGD 124 (537)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHC----
T ss_pred HHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCC
Confidence 44555556666777777777666555 8888888888888775 34567777777777777777766553
Q ss_pred --------------------------------------------------------------------------------
Q psy8160 76 -------------------------------------------------------------------------------- 75 (324)
Q Consensus 76 -------------------------------------------------------------------------------- 75 (324)
T Consensus 125 ~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 204 (537)
T 3fp2_A 125 FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLY 204 (537)
T ss_dssp -------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHH
Confidence
Q ss_pred ----------------------HHh-cCCCCch-------hhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHH
Q psy8160 76 ----------------------LCL-IDASPCT-------FTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVR 125 (324)
Q Consensus 76 ----------------------~al-~~~~~~~-------~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 125 (324)
+++ .+|.+.. ++..+|.++...|++++|+..+++++...|. . .++
T Consensus 205 ~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~----~~~ 279 (537)
T 3fp2_A 205 SATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-P----NSY 279 (537)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-H----HHH
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-c----hHH
Confidence 222 2333322 2333456666666677777777777666554 2 566
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHH
Q psy8160 126 FHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLY 205 (324)
Q Consensus 126 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 205 (324)
..+|.++...|++++|+..|++++..+ |.+ +.++..+|.++.. .+++++|+..++++++.+|.++.++.
T Consensus 280 ~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~--~~~~~~l~~~~~~-------~~~~~~A~~~~~~a~~~~~~~~~~~~ 348 (537)
T 3fp2_A 280 IFLALTLADKENSQEFFKFFQKAVDLN--PEY--PPTYYHRGQMYFI-------LQDYKNAKEDFQKAQSLNPENVYPYI 348 (537)
T ss_dssp HHHHHHTCCSSCCHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCSHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHhccC--CCC--HHHHHHHHHHHHh-------cCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 677777777777777777777777776 665 3477777777755 44788888888888888888888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH-----------------HHHHhhHHH
Q psy8160 206 LLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL-----------------NKYRDLGDF 268 (324)
Q Consensus 206 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-----------------~~~~~lg~~ 268 (324)
.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|+ +++|+..| ..+..+|.+
T Consensus 349 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~ 427 (537)
T 3fp2_A 349 QLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGD-FDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATI 427 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC-HHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888 88888777 335566777
Q ss_pred HHHc----------CCCCcchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHhh
Q psy8160 269 LVIN----------NIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYRD 321 (324)
Q Consensus 269 ~~~~----------~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 321 (324)
+... |++++ |+..|+++++.+|+++.+...++.+. ...|++++|+..|+.
T Consensus 428 ~~~~~~~~~~~~~~~~~~~--A~~~~~~a~~~~p~~~~~~~~l~~~~-~~~g~~~~A~~~~~~ 487 (537)
T 3fp2_A 428 LARQSSQDPTQLDEEKFNA--AIKLLTKACELDPRSEQAKIGLAQLK-LQMEKIDEAIELFED 487 (537)
T ss_dssp HHHHHTC----CCHHHHHH--HHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHH
T ss_pred HHHHhhccchhhhHhHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHH-HHhccHHHHHHHHHH
Confidence 8777 88888 88888888888888888877777654 345778888877765
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=219.50 Aligned_cols=256 Identities=14% Similarity=0.132 Sum_probs=218.9
Q ss_pred chhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHH
Q psy8160 19 VPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFK 95 (324)
Q Consensus 19 ~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~ 95 (324)
+..+|......+ ++|++.|+++++.+|+ ...+++.+|.++...|++++|+.+|++++ .+|.+..++..+|.++.
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPG---DAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYT 144 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 556666555555 9999999999999986 46689999999999999999999999999 99999999999999999
Q ss_pred hcccHHHHHHHHHHHHHhcCCCccc------HHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHH
Q psy8160 96 VNNEYDSALKHLTLCLIDASPCTFT------KLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWM 169 (324)
Q Consensus 96 ~~~~~~~A~~~~~~~l~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~ 169 (324)
..|++++|+..|++++...|..... ...++..+|.++...|++++|+..|++++..+ |....+.++..+|.+
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN--GDMIDPDLQTGLGVL 222 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS--CSSCCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC--cCccCHHHHHHHHHH
Confidence 9999999999999999887654321 12345566999999999999999999999999 873236699999999
Q ss_pred HHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcC
Q psy8160 170 YHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNN 249 (324)
Q Consensus 170 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 249 (324)
+.. .+++++|+.+|+++++.+|.++.+|..+|.++...|++++|+..|++++.++|+++.+|..+|.++...|
T Consensus 223 ~~~-------~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 223 FHL-------SGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLG 295 (365)
T ss_dssp HHH-------HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHH-------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCC
Confidence 977 4599999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHH-----------------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhh
Q psy8160 250 SNREDYHQAL-----------------------NKYRDLGDFLVINNIPTSNNNRQCYNSYST 289 (324)
Q Consensus 250 ~~~~~A~~~~-----------------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~ 289 (324)
+ +++|+..| .+|..+|.++...|+.+. |..+..+.++
T Consensus 296 ~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--a~~~~~~~l~ 355 (365)
T 4eqf_A 296 A-YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPEL--FQAANLGDLD 355 (365)
T ss_dssp C-CHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHH--HHHHHTTCCG
T ss_pred C-HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHH--HHHHHHhhHH
Confidence 9 99999998 468899999999999888 7776666443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=6.2e-30 Score=222.03 Aligned_cols=236 Identities=11% Similarity=0.044 Sum_probs=216.9
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhccc-HHHHHHHHHHHHHhcCCCcccHHHHHHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNE-YDSALKHLTLCLIDASPCTFTKLEVRFH 127 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 127 (324)
..+++..+|.++...|++++|+..|++++ ++|++..++..+|.++...|+ +++|+..|++++..+|.+. .+|++
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~----~a~~~ 171 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY----QVWHH 171 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH----HHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCH----HHHHH
Confidence 46789999999999999999999999999 999999999999999999997 9999999999999999886 89999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHH
Q psy8160 128 IAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLL 207 (324)
Q Consensus 128 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 207 (324)
+|.++..+|++++|+..|++++.++ |++. .+|+.+|+++.. .|++++|+.+|+++++++|.+..+|+.+
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~ld--P~~~--~a~~~lg~~~~~-------~g~~~eAl~~~~~al~l~P~~~~a~~~l 240 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILNQD--AKNY--HAWQHRQWVIQE-------FKLWDNELQYVDQLLKEDVRNNSVWNQR 240 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHC--TTCH--HHHHHHHHHHHH-------HTCCTTHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhC--ccCH--HHHHHHHHHHHH-------cCChHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999999999999999999 9884 499999999977 4489999999999999999999999999
Q ss_pred HHHHHH-cCCHHHH-----HHHHHHHHccCCCCHHHHHHhHHHHhhcC--CCHHHHHHHH----------HHHHhhHHHH
Q psy8160 208 GRCFAA-VGKVHDA-----FLAYRNSVEKSEGNADTWCSIGNKDFSNN--SNREDYHQAL----------NKYRDLGDFL 269 (324)
Q Consensus 208 g~~~~~-~~~~~~A-----~~~~~~al~~~p~~~~~~~~lg~~~~~~~--~~~~~A~~~~----------~~~~~lg~~~ 269 (324)
|.++.. .|.+++| +.+|++++.++|+++.+|.++|.++...| + +++|++.+ .++..+|.+|
T Consensus 241 g~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~-~~~a~~~~~~~~~~p~~~~al~~La~~~ 319 (382)
T 2h6f_A 241 YFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSK-YPNLLNQLLDLQPSHSSPYLIAFLVDIY 319 (382)
T ss_dssp HHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGG-CHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred HHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccc-hHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 999999 5555888 59999999999999999999999999988 7 89998887 5788999999
Q ss_pred HHcC---------CCCcchHHHHHHHh-hhcCCChhhhhhchhh
Q psy8160 270 VINN---------IPTSNNNRQCYNSY-STSIASCKHINNNKDF 303 (324)
Q Consensus 270 ~~~~---------~~~~~~A~~~~~~a-l~~~p~~~~~~~~l~~ 303 (324)
...+ .+++ |+++|+++ ++++|..+..+..+..
T Consensus 320 ~~~~~~~~~~~~~~~~~--A~~~~~~l~~~~DP~r~~~w~~~~~ 361 (382)
T 2h6f_A 320 EDMLENQCDNKEDILNK--ALELCEILAKEKDTIRKEYWRYIGR 361 (382)
T ss_dssp HHHHHTTCSSHHHHHHH--HHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHhcccccchHHHHHH--HHHHHHHHHHHhCchhHHHHHHHHH
Confidence 9875 2478 99999999 9999999888777654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.8e-29 Score=206.65 Aligned_cols=241 Identities=13% Similarity=0.112 Sum_probs=207.6
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Q psy8160 51 NEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIA 129 (324)
Q Consensus 51 ~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la 129 (324)
.++++..|.+++..|++++|+..|++++ .+|.+..++..+|.++...|++++|+..+++++. .+.+......++..+|
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHH
Confidence 3468899999999999999999999999 9999999999999999999999999999999998 4444434456789999
Q ss_pred HHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHH
Q psy8160 130 HLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGR 209 (324)
Q Consensus 130 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~ 209 (324)
.++...|++++|+..|++++..+ |.. ..++..+|.++.. .+++++|+.+++++++.+|.++.+++.+|.
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~--~~~--~~~~~~l~~~~~~-------~~~~~~A~~~~~~al~~~~~~~~~~~~l~~ 150 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD--TTR--LDMYGQIGSYFYN-------KGNFPLAIQYMEKQIRPTTTDPKVFYELGQ 150 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTC--THHHHHHHHHHHH-------TTCHHHHHHHHGGGCCSSCCCHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC--ccc--HHHHHHHHHHHHH-------ccCHHHHHHHHHHHhhcCCCcHHHHHHHHH
Confidence 99999999999999999999998 877 4499999999977 559999999999999999999999999994
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCC---------CHHHHHHHH------------HHHHhhHHH
Q psy8160 210 CFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNS---------NREDYHQAL------------NKYRDLGDF 268 (324)
Q Consensus 210 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~---------~~~~A~~~~------------~~~~~lg~~ 268 (324)
.....+++++|+..|+++++.+|+++.++..+|.++...++ .+++|++.. .+|..+|.+
T Consensus 151 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 230 (272)
T 3u4t_A 151 AYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYY 230 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 44555699999999999999999999999999999988774 144444443 478889999
Q ss_pred HHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhc
Q psy8160 269 LVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSN 305 (324)
Q Consensus 269 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 305 (324)
|...|++++ |+.+|+++++++|+++.++..+..+.
T Consensus 231 ~~~~~~~~~--A~~~~~~al~~~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 231 YTINRDKVK--ADAAWKNILALDPTNKKAIDGLKMKL 265 (272)
T ss_dssp HHHTTCHHH--HHHHHHHHHHHCTTCHHHHHHHC---
T ss_pred HHHcCCHHH--HHHHHHHHHhcCccHHHHHHHhhhhh
Confidence 999999999 99999999999999999998887654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.2e-29 Score=215.86 Aligned_cols=260 Identities=16% Similarity=0.144 Sum_probs=229.1
Q ss_pred ccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHH
Q psy8160 17 VRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLM 93 (324)
Q Consensus 17 ~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~ 93 (324)
..+..+|......+ ++|+..|+++++.+|+ ...+++.+|.++...|++++|+.+|++++ .+|.+..++..+|.+
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 141 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK---HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVS 141 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34556666555555 9999999999999986 45689999999999999999999999999 999999999999999
Q ss_pred HHhcccHHHHHHHHHHHHHhcCCCcccH------------HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhH
Q psy8160 94 FKVNNEYDSALKHLTLCLIDASPCTFTK------------LEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKAD 161 (324)
Q Consensus 94 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 161 (324)
+...|++++|+..+++++...|...... ......++.++ ..|++++|+..|++++..+ |....+.
T Consensus 142 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~--p~~~~~~ 218 (368)
T 1fch_A 142 FTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLD--PTSIDPD 218 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHS--TTSCCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhC--cCcccHH
Confidence 9999999999999999999887765211 01112467666 8999999999999999999 7732256
Q ss_pred HHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHh
Q psy8160 162 ICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSI 241 (324)
Q Consensus 162 ~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 241 (324)
++..+|.++.. .|++++|+.++++++..+|.++.++..+|.++...|++++|+..|++++.++|+++.++..+
T Consensus 219 ~~~~l~~~~~~-------~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 291 (368)
T 1fch_A 219 VQCGLGVLFNL-------SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNL 291 (368)
T ss_dssp HHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 99999999977 55999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCHHHHHHHH----------------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCC
Q psy8160 242 GNKDFSNNSNREDYHQAL----------------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIA 292 (324)
Q Consensus 242 g~~~~~~~~~~~~A~~~~----------------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p 292 (324)
|.++...|+ +++|+..| .+|..+|.+|...|++++ |..+++++++..+
T Consensus 292 ~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--A~~~~~~~l~~~~ 361 (368)
T 1fch_A 292 GISCINLGA-HREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA--YGAADARDLSTLL 361 (368)
T ss_dssp HHHHHHHTC-HHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG--HHHHHTTCHHHHH
T ss_pred HHHHHHCCC-HHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh--HHHhHHHHHHHHH
Confidence 999999999 99999998 368899999999999999 9999998887544
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=229.94 Aligned_cols=287 Identities=10% Similarity=0.075 Sum_probs=225.0
Q ss_pred cccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHH
Q psy8160 16 SVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGL 92 (324)
Q Consensus 16 ~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~ 92 (324)
++.+..+|...+..+ ++|++.|+++++.+|+ +..+++.+|.++..+|++++|+..|++++ .+|++..++..+|.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN---EPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC---CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 344455565555555 9999999999999986 45689999999999999999999999999 99999999999999
Q ss_pred HHHhcccHHHHHHHHHHHHHhcCC--------------------------------------------------------
Q psy8160 93 MFKVNNEYDSALKHLTLCLIDASP-------------------------------------------------------- 116 (324)
Q Consensus 93 ~~~~~~~~~~A~~~~~~~l~~~~~-------------------------------------------------------- 116 (324)
++...|++++|+..|+ ++...|.
T Consensus 102 ~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred HHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 9999999999988774 4422221
Q ss_pred ------------------------------------------------------Ccc---cHHHHHHHHHHHHHHhhcHH
Q psy8160 117 ------------------------------------------------------CTF---TKLEVRFHIAHLHEVQRKYK 139 (324)
Q Consensus 117 ------------------------------------------------------~~~---~~~~~~~~la~~~~~~~~~~ 139 (324)
+.. ..+.++..+|.++...|+++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~ 260 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLL 260 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHH
Confidence 110 01235667777888888888
Q ss_pred HHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHH
Q psy8160 140 TAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHD 219 (324)
Q Consensus 140 ~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~ 219 (324)
+|+..|++++..+ |. ..++..+|.++.. .+++++|+.+++++++.+|.++.++..+|.++...|++++
T Consensus 261 ~A~~~~~~~~~~~--~~---~~~~~~l~~~~~~-------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 328 (537)
T 3fp2_A 261 DAQVLLQESINLH--PT---PNSYIFLALTLAD-------KENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKN 328 (537)
T ss_dssp HHHHHHHHHHHHC--CC---HHHHHHHHHHTCC-------SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhcC--CC---chHHHHHHHHHHH-------hcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHH
Confidence 8888888888877 65 3377788887755 4488888888888888888888888888888888888888
Q ss_pred HHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhh
Q psy8160 220 AFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYS 288 (324)
Q Consensus 220 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al 288 (324)
|+..|++++..+|+++.+|..+|.++...|+ +++|+..| .++..+|.++...|++++ |+..|++++
T Consensus 329 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--A~~~~~~a~ 405 (537)
T 3fp2_A 329 AKEDFQKAQSLNPENVYPYIQLACLLYKQGK-FTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDT--AIKQYDIAK 405 (537)
T ss_dssp HHHHHHHHHHHCTTCSHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHH--HHHHHHHHH
Confidence 8888888888888888888888888888888 88888888 678888888888888888 888888888
Q ss_pred hcCCChhhhhhchhhh-----ccCCh----------hhHHHHHHHHhh
Q psy8160 289 TSIASCKHINNNKDFS-----NNSNR----------EDYHQALNKYRD 321 (324)
Q Consensus 289 ~~~p~~~~~~~~l~~~-----~~~~~----------~~~~~a~~~~~~ 321 (324)
+.+|+++.....+... ..... +++++|+..|+.
T Consensus 406 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 453 (537)
T 3fp2_A 406 RLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTK 453 (537)
T ss_dssp HHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHH
T ss_pred HcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHH
Confidence 8888777665555311 11223 788888887765
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-28 Score=227.09 Aligned_cols=250 Identities=14% Similarity=0.032 Sum_probs=120.3
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTL 109 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 109 (324)
++|++.|+++++.+|+ +..++..++.++...|++++|+..|++++ .+|.+...+..++.++...|++++|++.|++
T Consensus 322 ~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 398 (597)
T 2xpi_A 322 IDVLAITTKILEIDPY---NLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSK 398 (597)
T ss_dssp HHHHHHHHHHHHHCTT---CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcc---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 4455555555544443 12234444445555555555555555544 4444444444455555555555555555555
Q ss_pred HHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHH
Q psy8160 110 CLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHC 189 (324)
Q Consensus 110 ~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~ 189 (324)
++...|... .++..+|.++...|++++|++.|++++... |++ ..++..+|.++.. .|++++|+..
T Consensus 399 ~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~--~~~~~~l~~~~~~-------~g~~~~A~~~ 463 (597)
T 2xpi_A 399 SSTMDPQFG----PAWIGFAHSFAIEGEHDQAISAYTTAARLF--QGT--HLPYLFLGMQHMQ-------LGNILLANEY 463 (597)
T ss_dssp HHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--TTC--SHHHHHHHHHHHH-------HTCHHHHHHH
T ss_pred HHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccc--hHHHHHHHHHHHH-------cCCHHHHHHH
Confidence 544443332 344445555555555555555555554444 433 2244444444433 2244555555
Q ss_pred HHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc------CCCC-HHHHHHhHHHHhhcCCCHHHHHHHH---
Q psy8160 190 LQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEK------SEGN-ADTWCSIGNKDFSNNSNREDYHQAL--- 259 (324)
Q Consensus 190 ~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~-~~~~~~lg~~~~~~~~~~~~A~~~~--- 259 (324)
|+++++..|.++.+|..+|.++...|++++|+..|+++++. +|++ +.+|..+|.++...|+ +++|+..|
T Consensus 464 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~ 542 (597)
T 2xpi_A 464 LQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM-YDAAIDALNQG 542 (597)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC-HHHHHHHHHHH
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC-HHHHHHHHHHH
Confidence 55555555555555555555555555555555555555444 3332 3444555555555555 55554444
Q ss_pred --------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhch
Q psy8160 260 --------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNK 301 (324)
Q Consensus 260 --------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 301 (324)
.+|..+|.+|...|++++ |++.|+++++++|+++.+...+
T Consensus 543 ~~~~p~~~~~~~~l~~~~~~~g~~~~--A~~~~~~~l~~~p~~~~~~~~l 590 (597)
T 2xpi_A 543 LLLSTNDANVHTAIALVYLHKKIPGL--AITHLHESLAISPNEIMASDLL 590 (597)
T ss_dssp HHHSSCCHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHhCCHHH--HHHHHHHHHhcCCCChHHHHHH
Confidence 444455555555555555 5555555555555544444443
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-28 Score=227.13 Aligned_cols=269 Identities=10% Similarity=0.022 Sum_probs=248.7
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTL 109 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 109 (324)
++|++.|.++++. | .+..++..+|.++...|++++|+..|++++ .+|.+...+..++.++...|++++|+..+++
T Consensus 289 ~~A~~~~~~~~~~-~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 364 (597)
T 2xpi_A 289 RRAEDYLSSINGL-E---KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISND 364 (597)
T ss_dssp HHHHHHHHTSTTG-G---GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhcC-C---chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 8899999999887 3 356789999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHH
Q psy8160 110 CLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHC 189 (324)
Q Consensus 110 ~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~ 189 (324)
++...|... .++..+|.++...|++++|+..|++++..+ |.+ ..++..++.++.. .|++++|+..
T Consensus 365 ~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~--~~~~~~l~~~~~~-------~g~~~~A~~~ 429 (597)
T 2xpi_A 365 LVDRHPEKA----VTWLAVGIYYLCVNKISEARRYFSKSSTMD--PQF--GPAWIGFAHSFAI-------EGEHDQAISA 429 (597)
T ss_dssp HHHHCTTSH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHH-------HTCHHHHHHH
T ss_pred HHhhCcccH----HHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCC--HHHHHHHHHHHHH-------cCCHHHHHHH
Confidence 998877765 889999999999999999999999999988 877 4499999999977 4599999999
Q ss_pred HHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH----------
Q psy8160 190 LQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL---------- 259 (324)
Q Consensus 190 ~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~---------- 259 (324)
|+++++..|.+..+|..+|.++...|++++|+..|+++++.+|.++.+|..+|.++...|+ +++|+..|
T Consensus 430 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~ 508 (597)
T 2xpi_A 430 YTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSD-MQTAINHFQNALLLVKKT 508 (597)
T ss_dssp HHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999998
Q ss_pred --------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHhhc
Q psy8160 260 --------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYRDL 322 (324)
Q Consensus 260 --------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 322 (324)
.+|..+|.+|...|++++ |+..|+++++.+|+++.+...++... ...|++++|+..|+.+
T Consensus 509 ~~~p~~~~~~~~~l~~~~~~~g~~~~--A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~ 576 (597)
T 2xpi_A 509 QSNEKPWAATWANLGHAYRKLKMYDA--AIDALNQGLLLSTNDANVHTAIALVY-LHKKIPGLAITHLHES 576 (597)
T ss_dssp CCCSGGGHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHSSCCHHHHHHHHHHH-HHTTCHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHhCCCChHHHHHHHHHH-HHhCCHHHHHHHHHHH
Confidence 368899999999999999 99999999999999999998888764 3568899999888753
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.1e-29 Score=224.25 Aligned_cols=289 Identities=13% Similarity=0.054 Sum_probs=210.0
Q ss_pred ccccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCC--------
Q psy8160 15 TSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASP-------- 83 (324)
Q Consensus 15 ~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~-------- 83 (324)
++..+..+|...+..+ ++|++.|+++++++|+ ...+++.+|.++...|++++|+..|++++ .+|.+
T Consensus 38 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 114 (514)
T 2gw1_A 38 DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD---YSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPML 114 (514)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHH
T ss_pred cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHH
Confidence 4555555665555555 7777777777777765 33466777777777777777777777776 55422
Q ss_pred -----------------------------------------------------------------------chhhHHHHH
Q psy8160 84 -----------------------------------------------------------------------CTFTKLEGL 92 (324)
Q Consensus 84 -----------------------------------------------------------------------~~~~~~la~ 92 (324)
...+..+|.
T Consensus 115 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (514)
T 2gw1_A 115 ERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGL 194 (514)
T ss_dssp HHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHH
Confidence 222333444
Q ss_pred HHHh---cccHHHHHHHHHHHHH-----h--cCCCc---ccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchh
Q psy8160 93 MFKV---NNEYDSALKHLTLCLI-----D--ASPCT---FTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK 159 (324)
Q Consensus 93 ~~~~---~~~~~~A~~~~~~~l~-----~--~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 159 (324)
.+.. .|++++|+..|++++. . .|... .....+++.+|.++...|++++|+..|++++..+ |.
T Consensus 195 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~--- 269 (514)
T 2gw1_A 195 SNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PR--- 269 (514)
T ss_dssp HHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CC---
T ss_pred HHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cc---
Confidence 4443 6777777777777766 3 33221 2334677778888888888888888888888877 65
Q ss_pred hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHH
Q psy8160 160 ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWC 239 (324)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 239 (324)
..++..+|.++.. .+++++|+..+++++..+|.++.++..+|.++...|++++|+..|++++..+|.++.++.
T Consensus 270 ~~~~~~l~~~~~~-------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 342 (514)
T 2gw1_A 270 VNSYIYMALIMAD-------RNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYI 342 (514)
T ss_dssp HHHHHHHHHHHHT-------SSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHH
T ss_pred HHHHHHHHHHHHH-------CCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHH
Confidence 4477888888765 447788888888888888888888888888888888888888888888888888888888
Q ss_pred HhHHHHhhcCCCHHHHHHHH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhh------hhhchh
Q psy8160 240 SIGNKDFSNNSNREDYHQAL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKH------INNNKD 302 (324)
Q Consensus 240 ~lg~~~~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~l~ 302 (324)
.+|.++...|+ +++|+..| .++..+|.++...|++++ |+..|+++++..|+++. +...++
T Consensus 343 ~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~--A~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 419 (514)
T 2gw1_A 343 QLACLAYRENK-FDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDK--ALKQYDLAIELENKLDGIYVGIAPLVGKA 419 (514)
T ss_dssp HHHHHTTTTTC-HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHTSSSCSSCSHHHHHHH
T ss_pred HHHHHHHHcCC-HHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHhhhccchHHHHHHHHHHHH
Confidence 88888888888 88888888 678888888888888888 99999888888888765 555565
Q ss_pred hhccCC--hhhHHHHHHHHhh
Q psy8160 303 FSNNSN--REDYHQALNKYRD 321 (324)
Q Consensus 303 ~~~~~~--~~~~~~a~~~~~~ 321 (324)
...... .|++++|+..|+.
T Consensus 420 ~~~~~~~~~~~~~~A~~~~~~ 440 (514)
T 2gw1_A 420 TLLTRNPTVENFIEATNLLEK 440 (514)
T ss_dssp HHHHTSCCTTHHHHHHHHHHH
T ss_pred HHHhhhhhcCCHHHHHHHHHH
Confidence 544321 6888888887765
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.97 E-value=9.2e-29 Score=210.50 Aligned_cols=259 Identities=16% Similarity=0.168 Sum_probs=179.4
Q ss_pred ccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHH
Q psy8160 17 VRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLM 93 (324)
Q Consensus 17 ~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~ 93 (324)
..+..+|...+..+ ++|+..|+++++.+|+ ...+++.+|.++...|++++|+..|++++ .+|.+..++..+|.+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPE---REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 33344444433333 7777777777777765 34567777777777777777777777777 777777777777777
Q ss_pred HHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHH--------------HH-HHHHhhcHHHHHHHHHHHHhcCCCCCch
Q psy8160 94 FKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHI--------------AH-LHEVQRKYKTAKDSYEQLLKEDDLPVHL 158 (324)
Q Consensus 94 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~l--------------a~-~~~~~~~~~~A~~~~~~al~~~~~~~~~ 158 (324)
+...|++++|+..+++++...|... ..+..+ +. ++...|++++|+..+++++... |.+
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~- 171 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYE----QLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN--PND- 171 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTT----TC--------------------CCTTSHHHHHHHHHHHHHHHHHS--TTC-
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccH----HHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC--CCC-
Confidence 7777777777777777777666554 222222 44 4666777777777777777776 665
Q ss_pred hhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q psy8160 159 KADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTW 238 (324)
Q Consensus 159 ~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 238 (324)
..++..+|.++.. .+++++|+.+++++++.+|.++.++..+|.++...|++++|+..|++++..+|+++.+|
T Consensus 172 -~~~~~~la~~~~~-------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 243 (327)
T 3cv0_A 172 -AQLHASLGVLYNL-------SNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVM 243 (327)
T ss_dssp -HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred -HHHHHHHHHHHHH-------hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 3477777777755 34777777777777777777777777777777777777777777777777777777777
Q ss_pred HHhHHHHhhcCCCHHHHHHHH--------H---------------HHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChh
Q psy8160 239 CSIGNKDFSNNSNREDYHQAL--------N---------------KYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCK 295 (324)
Q Consensus 239 ~~lg~~~~~~~~~~~~A~~~~--------~---------------~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (324)
..+|.++...|+ +++|+..| . +|..+|.++...|++++ |...++++++..|++.
T Consensus 244 ~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--A~~~~~~~l~~~~~~~ 320 (327)
T 3cv0_A 244 YNMAVSYSNMSQ-YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDL--VELTYAQNVEPFAKEF 320 (327)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHH--HHHHTTCCSHHHHHHT
T ss_pred HHHHHHHHHhcc-HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHH--HHHHHHHHHHhcchhh
Confidence 777777777777 77777666 2 45667777777777777 7777777777666554
Q ss_pred h
Q psy8160 296 H 296 (324)
Q Consensus 296 ~ 296 (324)
.
T Consensus 321 ~ 321 (327)
T 3cv0_A 321 G 321 (327)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-28 Score=197.58 Aligned_cols=194 Identities=14% Similarity=0.130 Sum_probs=174.6
Q ss_pred cchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHH
Q psy8160 49 RANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFH 127 (324)
Q Consensus 49 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 127 (324)
.++++++.+|.++...|++++|+..|++++ .+|++..++..+|.++...|++++|+..|++++...|... .+++.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~----~a~~~ 78 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYL----GGYMV 78 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----HHHHH
Confidence 356689999999999999999999999999 9999999999999999999999999999999999999876 89999
Q ss_pred HHHHHHHh-----------hcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhh
Q psy8160 128 IAHLHEVQ-----------RKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEA 196 (324)
Q Consensus 128 la~~~~~~-----------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 196 (324)
+|.++... |++++|+..|+++++.+ |++ +.++..+|.++.. .|++++|+..|++++++
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~~--~~~~~~lg~~~~~-------~g~~~~A~~~~~~al~~ 147 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN--PRY--APLHLQRGLVYAL-------LGERDKAEASLKQALAL 147 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--ccc--HHHHHHHHHHHHH-------cCChHHHHHHHHHHHhc
Confidence 99999999 99999999999999999 988 5599999999977 55999999999999999
Q ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 197 DPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 197 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
+ .++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|+ +++|+..|
T Consensus 148 ~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~-~~~A~~~~ 208 (217)
T 2pl2_A 148 E-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGK-AEEAARAA 208 (217)
T ss_dssp C-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC------------
T ss_pred c-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC-HHHHHHHH
Confidence 9 9999999999999999999999999999999999999999999999999999 99988776
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-28 Score=207.96 Aligned_cols=253 Identities=13% Similarity=0.031 Sum_probs=226.3
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHI 128 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~l 128 (324)
..+.++.+|.++...|++++|+..|++++ .+|.+..++..+|.++...|++++|+..+++++...|... .++..+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~l 95 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI----AVHAAL 95 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCH----HHHHHH
Confidence 44578999999999999999999999999 9999999999999999999999999999999999988765 889999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHH--------------HH-HHHhhhhhcccchhHHHHHHHHHHH
Q psy8160 129 AHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQL--------------GW-MYHCIDTLGEKSHRETLAIHCLQKS 193 (324)
Q Consensus 129 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~~~~~~~~A~~~~~~a 193 (324)
|.++...|++++|+..+++++... |.... .+..+ +. ++.. .+++++|+.+++++
T Consensus 96 a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~A~~~~~~~ 164 (327)
T 3cv0_A 96 AVSHTNEHNANAALASLRAWLLSQ--PQYEQ--LGSVNLQADVDIDDLNVQSEDFFFAA-------PNEYRECRTLLHAA 164 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTS--TTTTT--C--------------------CCTTS-------HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CccHH--HHHHHhHHHHHHHHHHHHHHhHHHHH-------cccHHHHHHHHHHH
Confidence 999999999999999999999988 76633 44444 33 3433 55999999999999
Q ss_pred hhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH-----------HHH
Q psy8160 194 IEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL-----------NKY 262 (324)
Q Consensus 194 l~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-----------~~~ 262 (324)
++..|.++.++..+|.++...|++++|+..+++++..+|+++.+|..+|.++...|+ +++|+..| .+|
T Consensus 165 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~ 243 (327)
T 3cv0_A 165 LEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNR-PQEALDAYNRALDINPGYVRVM 243 (327)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHH
T ss_pred HhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 99999999 789
Q ss_pred HhhHHHHHHcCCCCcchHHHHHHHhhhcCCC------------hhhhhhchhhhccCChhhHHHHHHHHhh
Q psy8160 263 RDLGDFLVINNIPTSNNNRQCYNSYSTSIAS------------CKHINNNKDFSNNSNREDYHQALNKYRD 321 (324)
Q Consensus 263 ~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 321 (324)
..+|.+|...|++++ |+..|+++++..|+ ++.++..++.+. ...|++++|...++.
T Consensus 244 ~~l~~~~~~~g~~~~--A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 244 YNMAVSYSNMSQYDL--AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLL-NVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHHHHHHHTTCHHH--HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHH-HHTTCHHHHHHHTTC
T ss_pred HHHHHHHHHhccHHH--HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHH-HhcCCHHHHHHHHHH
Confidence 999999999999999 99999999999999 788887777654 356889998887764
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=222.38 Aligned_cols=255 Identities=10% Similarity=0.046 Sum_probs=236.8
Q ss_pred HHHHHHHHHHhc-----c--CCCc----ccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcc
Q psy8160 31 IKAIKTFQQLLY-----V--DPSY----LRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNN 98 (324)
Q Consensus 31 ~~A~~~~~~~l~-----~--~p~~----~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~ 98 (324)
++|+..|.++++ + +|+. +....+++.+|.++...|++++|+..|++++ .+|. ..++..+|.++...|
T Consensus 206 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~ 284 (514)
T 2gw1_A 206 DKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRN 284 (514)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCC
Confidence 999999999999 6 6654 4557789999999999999999999999999 9999 888999999999999
Q ss_pred cHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcc
Q psy8160 99 EYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGE 178 (324)
Q Consensus 99 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 178 (324)
++++|+..+++++...|... .++..+|.++...|++++|+..|++++... |.+ ..++..+|.++..
T Consensus 285 ~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~--~~~~~~l~~~~~~------ 350 (514)
T 2gw1_A 285 DSTEYYNYFDKALKLDSNNS----SVYYHRGQMNFILQNYDQAGKDFDKAKELD--PEN--IFPYIQLACLAYR------ 350 (514)
T ss_dssp CCTTGGGHHHHHHTTCTTCT----HHHHHHHHHHHHTTCTTHHHHHHHHHHHTC--SSC--SHHHHHHHHHTTT------
T ss_pred CHHHHHHHHHHHhhcCcCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--hhh--HHHHHHHHHHHHH------
Confidence 99999999999999888776 789999999999999999999999999998 877 4499999999976
Q ss_pred cchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH------HHHHhHHHHhh---cC
Q psy8160 179 KSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNAD------TWCSIGNKDFS---NN 249 (324)
Q Consensus 179 ~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~lg~~~~~---~~ 249 (324)
.+++++|+..++++++..|.++.++..+|.++...|++++|+..|++++...|+++. +|..+|.++.. .|
T Consensus 351 -~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 429 (514)
T 2gw1_A 351 -ENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE 429 (514)
T ss_dssp -TTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT
T ss_pred -cCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcC
Confidence 559999999999999999999999999999999999999999999999999998865 99999999999 99
Q ss_pred CCHHHHHHHH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhh
Q psy8160 250 SNREDYHQAL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFS 304 (324)
Q Consensus 250 ~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 304 (324)
+ +++|+..| .++..+|.+|...|++++ |+..|+++++++|+++.+...+.+.
T Consensus 430 ~-~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~--A~~~~~~a~~~~~~~~~~~~~~~~~ 492 (514)
T 2gw1_A 430 N-FIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDE--AITLFEESADLARTMEEKLQAITFA 492 (514)
T ss_dssp H-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHhccccHHHHHHHHHH
Confidence 9 99999999 788999999999999999 9999999999999999988776544
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-27 Score=195.75 Aligned_cols=231 Identities=12% Similarity=0.086 Sum_probs=208.6
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCccc---HHHHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFT---KLEVR 125 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~---~~~~~ 125 (324)
.++.++.+|.++...|++++|+.+|++++ .+ .+..++..+|.++...|++++|+..+++++...|..... ...++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 45689999999999999999999999999 88 888999999999999999999999999999877655322 25789
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHH
Q psy8160 126 FHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLY 205 (324)
Q Consensus 126 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 205 (324)
..+|.++...|++++|+..|++++... |.. .++.. .+++++|+..+++++..+|.++.++.
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~----------~~~~~-------~~~~~~a~~~~~~~~~~~~~~~~~~~ 143 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA----------DILTK-------LRNAEKELKKAEAEAYVNPEKAEEAR 143 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH----------HHHHH-------HHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chh----------HHHHH-------HhHHHHHHHHHHHHHHcCcchHHHHH
Confidence 999999999999999999999999988 652 23333 34899999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH-----------HHHHhhHHHHHHcCC
Q psy8160 206 LLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL-----------NKYRDLGDFLVINNI 274 (324)
Q Consensus 206 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~ 274 (324)
.+|.++...|++++|+..|++++..+|.++.+|..+|.++...|+ +++|+..| .+|..+|.+|...|+
T Consensus 144 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~ 222 (258)
T 3uq3_A 144 LEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMS-FPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE 222 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999 99999999 789999999999999
Q ss_pred CCcchHHHHHHHhhhcC------CChhhhhhchhh
Q psy8160 275 PTSNNNRQCYNSYSTSI------ASCKHINNNKDF 303 (324)
Q Consensus 275 ~~~~~A~~~~~~al~~~------p~~~~~~~~l~~ 303 (324)
+++ |+..|+++++++ |+++.+...+..
T Consensus 223 ~~~--A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 223 YAS--ALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHH--HHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 999 999999999999 888877766543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-27 Score=212.73 Aligned_cols=288 Identities=11% Similarity=0.023 Sum_probs=225.8
Q ss_pred hhhhHhHHHHH--HHHHHHHHHHhccCCC------cccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cC--------CC
Q psy8160 20 PKLQQFGKTLN--IKAIKTFQQLLYVDPS------YLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-ID--------AS 82 (324)
Q Consensus 20 ~~l~~~~~~~~--~~A~~~~~~~l~~~p~------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~--------~~ 82 (324)
..||.+....+ ++|++.|++++++.+. .+.....+..+|.+|..+|++++|+.+|++++ +. +.
T Consensus 55 n~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~ 134 (472)
T 4g1t_A 55 NLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIE 134 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchh
Confidence 34666655555 9999999999987431 23345578899999999999999999999998 53 23
Q ss_pred CchhhHHHHHHHHh--cccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHh---hcHHHHHHHHHHHHhcCCCCCc
Q psy8160 83 PCTFTKLEGLMFKV--NNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQ---RKYKTAKDSYEQLLKEDDLPVH 157 (324)
Q Consensus 83 ~~~~~~~la~~~~~--~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~al~~~~~~~~ 157 (324)
....+..+|..+.. .++|++|+++|++++...|.+. +++..+|.++... ++.++|++.|++++.++ |++
T Consensus 135 ~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~----~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~--p~~ 208 (472)
T 4g1t_A 135 SPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNP----EFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN--PDN 208 (472)
T ss_dssp CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCH----HHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC--SSC
T ss_pred hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC--Ccc
Confidence 33445555655544 4689999999999999998876 7888888776554 56788999999999999 887
Q ss_pred hhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHH
Q psy8160 158 LKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADT 237 (324)
Q Consensus 158 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 237 (324)
. .++..+|..+.. .+...+++++|+.++++++..+|.++.++..+|.++...|++++|+..|+++++.+|+++.+
T Consensus 209 ~--~~~~~l~~~~~~---~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 283 (472)
T 4g1t_A 209 Q--YLKVLLALKLHK---MREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYL 283 (472)
T ss_dssp H--HHHHHHHHHHHH---CC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred h--HHHHHHHHHHHH---HHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHH
Confidence 4 477778776643 23335588999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHHHhhc-------------------CCCHHHHHHHH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHh
Q psy8160 238 WCSIGNKDFSN-------------------NSNREDYHQAL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSY 287 (324)
Q Consensus 238 ~~~lg~~~~~~-------------------~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~a 287 (324)
+..+|.+|... +. +++|+..| .++..+|.+|...|++++ |+.+|+++
T Consensus 284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~--A~~~~~ka 360 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLEL-IGHAVAHLKKADEANDNLFRVCSILASLHALADQYEE--AEYYFQKE 360 (472)
T ss_dssp HHHHHHHHHHHHHHHHHC------CHHHHHHH-HHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh-HHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHH--HHHHHHHH
Confidence 99999998653 33 45666666 567899999999999999 99999999
Q ss_pred hhcCCChhhh---hhchhhhccCChhhHHHHHHHHhh
Q psy8160 288 STSIASCKHI---NNNKDFSNNSNREDYHQALNKYRD 321 (324)
Q Consensus 288 l~~~p~~~~~---~~~l~~~~~~~~~~~~~a~~~~~~ 321 (324)
++.+|++... ..+++.+.....+++++|+..|++
T Consensus 361 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~k 397 (472)
T 4g1t_A 361 FSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIE 397 (472)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred HhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999876543 333433333456889999988865
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-27 Score=205.11 Aligned_cols=235 Identities=11% Similarity=0.055 Sum_probs=205.0
Q ss_pred chhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhcc-HHHHHHHHHHHh-cCCCCchhhHHHHHHH
Q psy8160 19 VPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNE-YDSALKHLTLCL-IDASPCTFTKLEGLMF 94 (324)
Q Consensus 19 ~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al-~~~~~~~~~~~la~~~ 94 (324)
+..+|.+....+ ++|++.|+++++++|+ ...+|+.+|.++..+|+ +++|+.+|++++ ++|++..++..+|.++
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~P~---~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELNAA---NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhCcc---CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 334444333333 9999999999999987 45689999999999996 999999999999 9999999999999999
Q ss_pred HhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhh
Q psy8160 95 KVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCID 174 (324)
Q Consensus 95 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~ 174 (324)
...|++++|+.+|++++..+|.+. .+|+++|.++...|++++|+.+|++++.++ |.+ ..+|..+|.++..+.
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP~~~----~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~--~~a~~~lg~~l~~l~ 248 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDAKNY----HAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRN--NSVWNQRYFVISNTT 248 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTC--HHHHHHHHHHHHHTT
T ss_pred HHccCHHHHHHHHHHHHHhCccCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCC--HHHHHHHHHHHHHhc
Confidence 999999999999999999999887 899999999999999999999999999999 988 559999999996621
Q ss_pred hhcccchhHHHH-----HHHHHHHhhhCCccHHHHHHHHHHHHHcC--CHHHHHHHHHHHHccCCCCHHHHHHhHHHHhh
Q psy8160 175 TLGEKSHRETLA-----IHCLQKSIEADPKSGQSLYLLGRCFAAVG--KVHDAFLAYRNSVEKSEGNADTWCSIGNKDFS 247 (324)
Q Consensus 175 ~~~~~~~~~~~A-----~~~~~~al~~~~~~~~~~~~lg~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 247 (324)
| ..++| +.+|++++.++|++..+|+.+|.++...| ++++|+..++++ +.+|+++.++..+|.+|..
T Consensus 249 --~----~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~ 321 (382)
T 2h6f_A 249 --G----YNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYED 321 (382)
T ss_dssp --C----SCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHH
T ss_pred --C----cchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHH
Confidence 1 22455 69999999999999999999999999988 699999999998 9999999999999999999
Q ss_pred cC---------CCHHHHHHHH------------HHHHhhHHHHHHc
Q psy8160 248 NN---------SNREDYHQAL------------NKYRDLGDFLVIN 272 (324)
Q Consensus 248 ~~---------~~~~~A~~~~------------~~~~~lg~~~~~~ 272 (324)
.| . +++|+++| ..|..++..+..+
T Consensus 322 ~~~~~~~~~~~~-~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 322 MLENQCDNKEDI-LNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHTTCSSHHHH-HHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HhcccccchHHH-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 75 3 48898887 4566666665443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-27 Score=212.24 Aligned_cols=258 Identities=15% Similarity=0.060 Sum_probs=196.6
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHh---ccHHHHHHHHHHHh-cCCCCchhhHHHHHHHH----hcccHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVN---NEYDSALKHLTLCL-IDASPCTFTKLEGLMFK----VNNEYDS 102 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~---~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~----~~~~~~~ 102 (324)
++|++.|+++++++|+. ++++..+|.++... +++++|++.|++++ ++|.+..++..+|..+. ..|++++
T Consensus 155 ~~A~~~~~kal~~~p~~---~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~ 231 (472)
T 4g1t_A 155 ERAKVCFEKALEKKPKN---PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGE 231 (472)
T ss_dssp HHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CH
T ss_pred HHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHH
Confidence 89999999999999874 56788888886654 56688999999999 99999998888776554 4578899
Q ss_pred HHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhh------
Q psy8160 103 ALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTL------ 176 (324)
Q Consensus 103 A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~------ 176 (324)
|++.+++++...|... .++..+|.++...|++++|+..|++++... |++ +.++..+|.+|......
T Consensus 232 a~~~~~~al~~~~~~~----~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~--~~~~~~lg~~y~~~~~~~~~~~~ 303 (472)
T 4g1t_A 232 GEKLVEEALEKAPGVT----DVLRSAAKFYRRKDEPDKAIELLKKALEYI--PNN--AYLHCQIGCCYRAKVFQVMNLRE 303 (472)
T ss_dssp HHHHHHHHHHHCSSCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTC--HHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhCccHH----HHHHHHHHHHHHcCchHHHHHHHHHHHHhC--CCh--HHHHHHHHHHHHHHHHHhhhHHH
Confidence 9999999999988876 889999999999999999999999999999 888 55999999988542110
Q ss_pred ------cccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH---HHHHhHHH-Hh
Q psy8160 177 ------GEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNAD---TWCSIGNK-DF 246 (324)
Q Consensus 177 ------~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~lg~~-~~ 246 (324)
......+++|+..++++++.+|.++.++..+|.++...|++++|+.+|++++.++|++.. .+..+|.+ +.
T Consensus 304 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~ 383 (472)
T 4g1t_A 304 NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLY 383 (472)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 011346789999999999999999999999999999999999999999999999987654 45667755 45
Q ss_pred hcCCCHHHHHHHH-----------------------------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcC
Q psy8160 247 SNNSNREDYHQAL-----------------------------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSI 291 (324)
Q Consensus 247 ~~~~~~~~A~~~~-----------------------------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~ 291 (324)
..|+ +++|+..| .+|.+||.+|...|++++ |+++|++|+++.
T Consensus 384 ~~~~-~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~--A~~~y~kALe~~ 460 (472)
T 4g1t_A 384 QMKC-EDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQ--ADEDSERGLESG 460 (472)
T ss_dssp TSSC-HHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---------------
T ss_pred HCCC-HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH--HHHHHHHHHhcC
Confidence 7888 99999888 478899999999999999 999999999999
Q ss_pred CChhhhhhchh
Q psy8160 292 ASCKHINNNKD 302 (324)
Q Consensus 292 p~~~~~~~~l~ 302 (324)
|.+|.+...++
T Consensus 461 ~~~p~a~~~~G 471 (472)
T 4g1t_A 461 SLIPSASSWNG 471 (472)
T ss_dssp -----------
T ss_pred CCCCcHhhcCC
Confidence 99998776554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-26 Score=185.21 Aligned_cols=205 Identities=11% Similarity=0.057 Sum_probs=160.9
Q ss_pred CCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhh
Q psy8160 81 ASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKA 160 (324)
Q Consensus 81 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 160 (324)
|.+..++..+|.++...|++++|+..|++++...|.+. .+++.+|.++...|++++|+..|++++..+ |++ +
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~--~ 73 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDP----EALYWLARTQLKLGLVNPALENGKTLVART--PRY--L 73 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC--H
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCc--H
Confidence 67788899999999999999999999999999998886 899999999999999999999999999999 988 5
Q ss_pred HHHHHHHHHHHhhhhhc----ccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH
Q psy8160 161 DICRQLGWMYHCIDTLG----EKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNAD 236 (324)
Q Consensus 161 ~~~~~l~~~~~~~~~~~----~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 236 (324)
.++..+|.++....... ...|++++|+..++++++.+|+++.+|+.+|.++...|++++|+..|+++++++ +++.
T Consensus 74 ~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~ 152 (217)
T 2pl2_A 74 GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPE 152 (217)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHH
T ss_pred HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchH
Confidence 59999999997720000 000699999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHH
Q psy8160 237 TWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQAL 316 (324)
Q Consensus 237 ~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~ 316 (324)
++..+|.++...|+ +++ |+..|+++++.+|+++.+..+++.+. ...|++++|+
T Consensus 153 ~~~~la~~~~~~g~-~~~-------------------------A~~~~~~al~~~P~~~~~~~~la~~~-~~~g~~~~A~ 205 (217)
T 2pl2_A 153 IRSALAELYLSMGR-LDE-------------------------ALAQYAKALEQAPKDLDLRVRYASAL-LLKGKAEEAA 205 (217)
T ss_dssp HHHHHHHHHHHHTC-HHH-------------------------HHHHHHHHHHHSTTCHHHHHHHHHHH-TC--------
T ss_pred HHHHHHHHHHHcCC-HHH-------------------------HHHHHHHHHHhCCCChHHHHHHHHHH-HHccCHHHHH
Confidence 99999999888888 555 55555555555555555555554432 3445555555
Q ss_pred HHHhh
Q psy8160 317 NKYRD 321 (324)
Q Consensus 317 ~~~~~ 321 (324)
..|+.
T Consensus 206 ~~~~~ 210 (217)
T 2pl2_A 206 RAAAL 210 (217)
T ss_dssp -----
T ss_pred HHHHH
Confidence 55543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.3e-25 Score=185.42 Aligned_cols=259 Identities=13% Similarity=0.086 Sum_probs=184.8
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLC 110 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 110 (324)
.+|+..++++...+|+. ..+....++.+|...|+++.|+..++. .+|....+...++..+...+++++|++.++++
T Consensus 16 ~~ai~~~~~~~~~~p~~--~~e~~~~l~r~yi~~g~~~~al~~~~~--~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~l 91 (291)
T 3mkr_A 16 QQCINEAQRVKPSSPER--DVERDVFLYRAYLAQRKYGVVLDEIKP--SSAPELQAVRMFAEYLASHSRRDAIVAELDRE 91 (291)
T ss_dssp HHHHHHHHHSCCCSHHH--HHHHHHHHHHHHHHTTCHHHHHHHSCT--TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCchh--hHHHHHHHHHHHHHCCCHHHHHHHhcc--cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 77777777776666542 234666777788888888877776654 24445556666777777777788888888777
Q ss_pred HHhc--CCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHH
Q psy8160 111 LIDA--SPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIH 188 (324)
Q Consensus 111 l~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~ 188 (324)
+... |.+. .+++.+|.++...|++++|+..+++ |++ ..++..+|.++.. .|++++|+.
T Consensus 92 l~~~~~P~~~----~~~~~la~~~~~~g~~~~Al~~l~~-------~~~--~~~~~~l~~~~~~-------~g~~~~A~~ 151 (291)
T 3mkr_A 92 MSRSVDVTNT----TFLLMAASIYFYDQNPDAALRTLHQ-------GDS--LECMAMTVQILLK-------LDRLDLARK 151 (291)
T ss_dssp HHSCCCCSCH----HHHHHHHHHHHHTTCHHHHHHHHTT-------CCS--HHHHHHHHHHHHH-------TTCHHHHHH
T ss_pred HhcccCCCCH----HHHHHHHHHHHHCCCHHHHHHHHhC-------CCC--HHHHHHHHHHHHH-------CCCHHHHHH
Confidence 7653 4443 6677778888888888888877766 444 3477777777765 447788888
Q ss_pred HHHHHhhhCCccHHHHHHHH--HHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH-------
Q psy8160 189 CLQKSIEADPKSGQSLYLLG--RCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL------- 259 (324)
Q Consensus 189 ~~~~al~~~~~~~~~~~~lg--~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~------- 259 (324)
.++++++.+|++.......+ .++...|++++|+..|+++++.+|+++.+|.++|.++...|+ +++|+..|
T Consensus 152 ~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 152 ELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGR-WEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC
T ss_pred HHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhC
Confidence 88888877777654433333 223344778888888888888888888888888888888888 88887777
Q ss_pred ----HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHh
Q psy8160 260 ----NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYR 320 (324)
Q Consensus 260 ----~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~ 320 (324)
+++.++|.++...|+..+ .+..+++++++++|++|.+.... .+.+.|+++..+|.
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~e-aa~~~~~~~~~~~P~~~~~~d~~-----~~~~~fd~~~~~~~ 289 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPE-VTNRYLSQLKDAHRSHPFIKEYR-----AKENDFDRLVLQYA 289 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHH-HHHHHHHHHHHHCTTCHHHHHHH-----HHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHhCCCChHHHHHH-----HHHHHHHHHHHHcC
Confidence 677788888888887765 04688899999999999987633 34578999998885
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=175.95 Aligned_cols=177 Identities=16% Similarity=0.240 Sum_probs=164.5
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHI 128 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~l 128 (324)
.+.+|+.+|.+|..+|++++|+++|++++ .+|++..++..+|.++...|++++|+..+++++...|... .++..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSA----EAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH----HHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhH----HHHHHH
Confidence 46789999999999999999999999999 9999999999999999999999999999999999888876 889999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHH
Q psy8160 129 AHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLG 208 (324)
Q Consensus 129 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg 208 (324)
|.++...++++.|+..+.+++..+ |.+ ..++..+|.++.. .|++++|+..|+++++.+|.++.+|+.+|
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~--~~~--~~~~~~lg~~~~~-------~g~~~~A~~~~~~~l~~~p~~~~~~~~lg 148 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALN--TVY--ADAYYKLGLVYDS-------MGEHDKAIEAYEKTISIKPGFIRAYQSIG 148 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--ccc--hHHHHHHHHHHHH-------hCCchhHHHHHHHHHHhcchhhhHHHHHH
Confidence 999999999999999999999999 887 4499999999977 55999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHH
Q psy8160 209 RCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243 (324)
Q Consensus 209 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 243 (324)
.++..+|++++|+..|+++++++|+++. +.+|.
T Consensus 149 ~~~~~~g~~~~A~~~~~~al~~~p~~a~--~~lal 181 (184)
T 3vtx_A 149 LAYEGKGLRDEAVKYFKKALEKEEKKAK--YELAL 181 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTHHHHH--HCSCC
T ss_pred HHHHHCCCHHHHHHHHHHHHhCCccCHH--HHHHh
Confidence 9999999999999999999999997653 44543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.9e-25 Score=181.01 Aligned_cols=221 Identities=11% Similarity=0.069 Sum_probs=197.0
Q ss_pred cccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCC-------ch
Q psy8160 16 SVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASP-------CT 85 (324)
Q Consensus 16 ~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~-------~~ 85 (324)
++.+..+|...+..+ ++|++.|.++++.+ + ...+++.+|.++...|++++|+.+|++++ .+|.. ..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~---~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-K---DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-C---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-c---cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 344556676665555 99999999999998 3 35689999999999999999999999999 88776 57
Q ss_pred hhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHH
Q psy8160 86 FTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQ 165 (324)
Q Consensus 86 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 165 (324)
++..+|.++...|++++|+..+++++...|. +.++...|++++|+..+++++..+ |.. +.++..
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------------~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~ 144 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTEHRT------------ADILTKLRNAEKELKKAEAEAYVN--PEK--AEEARL 144 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHHHHHHHHHHCC--HHH--HHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCch------------hHHHHHHhHHHHHHHHHHHHHHcC--cch--HHHHHH
Confidence 8888999999999999999999999987664 456778899999999999999988 776 559999
Q ss_pred HHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHH
Q psy8160 166 LGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKD 245 (324)
Q Consensus 166 l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 245 (324)
+|.++.. .+++++|+.+++++++.+|.++.++..+|.++...|++++|+..|++++..+|+++.+|..+|.++
T Consensus 145 ~~~~~~~-------~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 217 (258)
T 3uq3_A 145 EGKEYFT-------KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 217 (258)
T ss_dssp HHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHH-------hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 9999977 559999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCHHHHHHHHHHHHh
Q psy8160 246 FSNNSNREDYHQALNKYRD 264 (324)
Q Consensus 246 ~~~~~~~~~A~~~~~~~~~ 264 (324)
...|+ +++|+..|.....
T Consensus 218 ~~~g~-~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 218 IAVKE-YASALETLDAART 235 (258)
T ss_dssp HHTTC-HHHHHHHHHHHHH
T ss_pred HHHhh-HHHHHHHHHHHHH
Confidence 99999 9999999833333
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.3e-25 Score=183.94 Aligned_cols=225 Identities=14% Similarity=0.064 Sum_probs=196.3
Q ss_pred ccccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchh----hH
Q psy8160 15 TSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTF----TK 88 (324)
Q Consensus 15 ~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~ 88 (324)
+++....+|...+..+ ++|+..|+++++.+|+. ..+++.+|.++...|++++|+..|++++..|.+... +.
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 78 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNS---PYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFE 78 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCC---STTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHH
Confidence 4556666777655555 99999999999999874 447999999999999999999999999944444333 77
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHH-
Q psy8160 89 LEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLG- 167 (324)
Q Consensus 89 ~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~- 167 (324)
.+|.++...|++++|++.|++++...|... .++..+|.++...|++++|+..|++++..+ |.+ ..++..+|
T Consensus 79 ~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~--~~~~~~l~~ 150 (272)
T 3u4t_A 79 YYGKILMKKGQDSLAIQQYQAAVDRDTTRL----DMYGQIGSYFYNKGNFPLAIQYMEKQIRPT--TTD--PKVFYELGQ 150 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCT----HHHHHHHHHHHHTTCHHHHHHHHGGGCCSS--CCC--HHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCcccH----HHHHHHHHHHHHccCHHHHHHHHHHHhhcC--CCc--HHHHHHHHH
Confidence 899999999999999999999999988876 889999999999999999999999999998 887 45999999
Q ss_pred HHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHccC---CC-----CHH
Q psy8160 168 WMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGK---VHDAFLAYRNSVEKS---EG-----NAD 236 (324)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~---p~-----~~~ 236 (324)
.++.. +++++|+..++++++.+|.++.+++.+|.++...|+ +++|+..|+++++.. |+ ...
T Consensus 151 ~~~~~--------~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 222 (272)
T 3u4t_A 151 AYYYN--------KEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIE 222 (272)
T ss_dssp HHHHT--------TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHH
T ss_pred HHHHH--------HHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHH
Confidence 66644 289999999999999999999999999999999999 899999999999886 44 236
Q ss_pred HHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 237 TWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 237 ~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
++..+|.+|...|+ +++|+.+|
T Consensus 223 ~~~~l~~~~~~~~~-~~~A~~~~ 244 (272)
T 3u4t_A 223 ANEYIAYYYTINRD-KVKADAAW 244 (272)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHH
T ss_pred HHHHHHHHHHHcCC-HHHHHHHH
Confidence 88999999999999 99999988
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-25 Score=182.21 Aligned_cols=214 Identities=17% Similarity=0.185 Sum_probs=166.2
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHI 128 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~l 128 (324)
.+..++.+|.++...|++++|+.+|++++ .+|.+..++..+|.++...|++++|+..+++++...|... .++..+
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l 97 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAA----TAYYGA 97 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcch----HHHHHH
Confidence 45578889999999999999999999999 8899988888899999999999999999999988877654 788888
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHH
Q psy8160 129 AHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLG 208 (324)
Q Consensus 129 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg 208 (324)
|.++...|++++|+..|++++... |.+ ..++..+|.++.. .+++++|+..++++++..|.++.++..+|
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~~--~~~--~~~~~~~a~~~~~-------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 166 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRAG--MEN--GDLFYMLGTVLVK-------LEQPKLALPYLQRAVELNENDTEARFQFG 166 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHT--CCS--HHHHHHHHHHHHH-------TSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC--CCC--HHHHHHHHHHHHH-------hccHHHHHHHHHHHHHhCCccHHHHHHHH
Confidence 999999999999999999999888 776 4488888888866 44889999999999999998899999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhh
Q psy8160 209 RCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYS 288 (324)
Q Consensus 209 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al 288 (324)
.++...|++++|+..+++++..+|+++.+|..+|.++...|+ +++ |+..|++++
T Consensus 167 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~------------------------~~~--A~~~~~~~~ 220 (243)
T 2q7f_A 167 MCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKEN------------------------REK--ALEMLDKAI 220 (243)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------------------------TTH--HHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccC------------------------HHH--HHHHHHHHH
Confidence 999999999999999999999988888777777777666666 778 999999999
Q ss_pred hcCCChhhhhhchhhh
Q psy8160 289 TSIASCKHINNNKDFS 304 (324)
Q Consensus 289 ~~~p~~~~~~~~l~~~ 304 (324)
+.+|+++.+...+..+
T Consensus 221 ~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 221 DIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHCTTCHHHHHHHTC-
T ss_pred ccCcchHHHHHHHHHH
Confidence 9999998888777654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.4e-26 Score=198.28 Aligned_cols=264 Identities=14% Similarity=0.078 Sum_probs=220.6
Q ss_pred hhhhHhHHHHH--HHHHHHHHHHhccCCCcccc-hHHHHHHHHHHHHhccHHHHHHHHHHHh-c------CCCCchhhHH
Q psy8160 20 PKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRA-NEVHLRLGLMFKVNNEYDSALKHLTLCL-I------DASPCTFTKL 89 (324)
Q Consensus 20 ~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al-~------~~~~~~~~~~ 89 (324)
..+|...+..+ ++|+..|++++++.|+.+.. ..++..+|.++...|++++|+.+|++++ . .|....++..
T Consensus 13 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 92 (406)
T 3sf4_A 13 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 92 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 34455444444 99999999999999875432 4689999999999999999999999998 5 3444667778
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhcCCCc--ccHHHHHHHHHHHHHHhhc--------------------HHHHHHHHHH
Q psy8160 90 EGLMFKVNNEYDSALKHLTLCLIDASPCT--FTKLEVRFHIAHLHEVQRK--------------------YKTAKDSYEQ 147 (324)
Q Consensus 90 la~~~~~~~~~~~A~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~~~~--------------------~~~A~~~~~~ 147 (324)
+|.++...|++++|+.++++++...+... .....++..+|.++...|+ +++|+..+++
T Consensus 93 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 172 (406)
T 3sf4_A 93 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEE 172 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999987654332 2345689999999999999 9999999999
Q ss_pred HHhcCCC-C-CchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH------HHHHHHHHHHHHcCCHHH
Q psy8160 148 LLKEDDL-P-VHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG------QSLYLLGRCFAAVGKVHD 219 (324)
Q Consensus 148 al~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~~~lg~~~~~~~~~~~ 219 (324)
++..... + ....+.++..+|.++.. .+++++|+.+++++++..|..+ .++..+|.++...|++++
T Consensus 173 al~~~~~~~~~~~~~~~~~~la~~~~~-------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 173 NLSLVTALGDRAAQGRAFGNLGNTHYL-------LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH-------HTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHH-------ccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 9876311 1 11225689999999977 4599999999999998766544 389999999999999999
Q ss_pred HHHHHHHHHccCCCC------HHHHHHhHHHHhhcCCCHHHHHHHH-----------------HHHHhhHHHHHHcCCCC
Q psy8160 220 AFLAYRNSVEKSEGN------ADTWCSIGNKDFSNNSNREDYHQAL-----------------NKYRDLGDFLVINNIPT 276 (324)
Q Consensus 220 A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~~A~~~~-----------------~~~~~lg~~~~~~~~~~ 276 (324)
|+..+++++.+.|.. +.++..+|.++...|+ +++|+..| .++..+|.+|...|+++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD-YEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 999999999987766 7789999999999999 99999998 47889999999999999
Q ss_pred cchHHHHHHHhhhcCCC
Q psy8160 277 SNNNRQCYNSYSTSIAS 293 (324)
Q Consensus 277 ~~~A~~~~~~al~~~p~ 293 (324)
+ |+.+|++++++.+.
T Consensus 325 ~--A~~~~~~al~~~~~ 339 (406)
T 3sf4_A 325 Q--AMHFAEKHLEISRE 339 (406)
T ss_dssp H--HHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHHH
Confidence 9 99999999988543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.9e-25 Score=199.03 Aligned_cols=216 Identities=9% Similarity=0.032 Sum_probs=196.6
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccH-HHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEY-DSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLT 108 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~-~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 108 (324)
++++..+.++....|+ ...+++.+|.++...|++ ++|+.+|++++ .+|.+..++..+|.++...|++++|+.+|+
T Consensus 85 ~~al~~l~~~~~~~~~---~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 85 EKTLQQMEEVLGSAQV---EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHTTCCC---CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccCch---hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7788888888877764 567899999999999999 99999999999 999999999999999999999999999999
Q ss_pred HHHHhcCCCcccHHHHHHHHHHHHHHh---------hcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhh-hhhcc
Q psy8160 109 LCLIDASPCTFTKLEVRFHIAHLHEVQ---------RKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCI-DTLGE 178 (324)
Q Consensus 109 ~~l~~~~~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ 178 (324)
+++...|. . .++..+|.++... |++++|+..|++++..+ |++ +.++..+|.++... ...|.
T Consensus 162 ~al~~~p~-~----~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~lg~~~~~~~~~~~~ 232 (474)
T 4abn_A 162 GALTHCKN-K----VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLD--GRSWYILGNAYLSLYFNTGQ 232 (474)
T ss_dssp HHHTTCCC-H----HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhhCCC-H----HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCC--HHHHHHHHHHHHHHHHhhcc
Confidence 99988766 2 7899999999999 99999999999999999 888 55999999999762 00111
Q ss_pred cchhHHHHHHHHHHHhhhCC---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHH
Q psy8160 179 KSHRETLAIHCLQKSIEADP---KSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDY 255 (324)
Q Consensus 179 ~~~~~~~A~~~~~~al~~~~---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A 255 (324)
..+++++|+.+|+++++++| .++.+|+.+|.++...|++++|+..|+++++++|+++.+|..++.++...|+ +++|
T Consensus 233 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~-~~eA 311 (474)
T 4abn_A 233 NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSR-LTSL 311 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH-HHHH
T ss_pred ccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH-HHHH
Confidence 12699999999999999999 9999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHH
Q psy8160 256 HQAL 259 (324)
Q Consensus 256 ~~~~ 259 (324)
+..+
T Consensus 312 i~~~ 315 (474)
T 4abn_A 312 LESK 315 (474)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 8865
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.1e-26 Score=192.47 Aligned_cols=264 Identities=14% Similarity=0.079 Sum_probs=217.5
Q ss_pred hhhHhHHHHH--HHHHHHHHHHhccCCCcccc-hHHHHHHHHHHHHhccHHHHHHHHHHHh-c------CCCCchhhHHH
Q psy8160 21 KLQQFGKTLN--IKAIKTFQQLLYVDPSYLRA-NEVHLRLGLMFKVNNEYDSALKHLTLCL-I------DASPCTFTKLE 90 (324)
Q Consensus 21 ~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al-~------~~~~~~~~~~l 90 (324)
..|...+..+ ++|+..|+++++..|+.+.. ..++..+|.++...|++++|+.++++++ . .|....++..+
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 3454444444 99999999999999874322 4688999999999999999999999998 5 34456677789
Q ss_pred HHHHHhcccHHHHHHHHHHHHHhcCCCc--ccHHHHHHHHHHHHHHhhc--------------------HHHHHHHHHHH
Q psy8160 91 GLMFKVNNEYDSALKHLTLCLIDASPCT--FTKLEVRFHIAHLHEVQRK--------------------YKTAKDSYEQL 148 (324)
Q Consensus 91 a~~~~~~~~~~~A~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~~~~--------------------~~~A~~~~~~a 148 (324)
|.++...|++++|+..+++++...+... .....++..+|.++...|+ +++|+..++++
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999987654432 2345689999999999999 99999999998
Q ss_pred HhcCCC--CCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH------HHHHHHHHHHHHcCCHHHH
Q psy8160 149 LKEDDL--PVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG------QSLYLLGRCFAAVGKVHDA 220 (324)
Q Consensus 149 l~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~~~lg~~~~~~~~~~~A 220 (324)
+..... .....+.++..+|.++.. .+++++|+.+++++++..+... .++..+|.++...|++++|
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYL-------LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHH-------hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 865310 111225688899999977 4599999999999998765443 4899999999999999999
Q ss_pred HHHHHHHHccCCCC------HHHHHHhHHHHhhcCCCHHHHHHHH-----------------HHHHhhHHHHHHcCCCCc
Q psy8160 221 FLAYRNSVEKSEGN------ADTWCSIGNKDFSNNSNREDYHQAL-----------------NKYRDLGDFLVINNIPTS 277 (324)
Q Consensus 221 ~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~~A~~~~-----------------~~~~~lg~~~~~~~~~~~ 277 (324)
+..+++++.+.|.. +.++..+|.++...|+ +++|+..+ .++..+|.+|...|++++
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 321 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD-YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQ 321 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 99999999887765 7788999999999999 99999988 478899999999999999
Q ss_pred chHHHHHHHhhhcCCCh
Q psy8160 278 NNNRQCYNSYSTSIASC 294 (324)
Q Consensus 278 ~~A~~~~~~al~~~p~~ 294 (324)
|+.+|++++++.+..
T Consensus 322 --A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 322 --AMHFAEKHLEISREV 336 (338)
T ss_dssp --HHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHhh
Confidence 999999999988753
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=197.60 Aligned_cols=254 Identities=16% Similarity=0.119 Sum_probs=217.7
Q ss_pred HHHHHHHHHHhccCCCccc-chHHHHHHHHHHHHhccHHHHHHHHHHHh-c------CCCCchhhHHHHHHHHhcccHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLR-ANEVHLRLGLMFKVNNEYDSALKHLTLCL-I------DASPCTFTKLEGLMFKVNNEYDS 102 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~------~~~~~~~~~~la~~~~~~~~~~~ 102 (324)
++|+..|++++++.|+.+. ...+++.+|.++...|++++|+.+|++++ . +|....++..+|.++...|++++
T Consensus 65 ~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 144 (411)
T 4a1s_A 65 RAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDE 144 (411)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHH
Confidence 9999999999999987432 23589999999999999999999999999 6 56667788889999999999999
Q ss_pred HHHHHHHHHHhcCCC--cccHHHHHHHHHHHHHHhhc-----------------HHHHHHHHHHHHhcCCC--CCchhhH
Q psy8160 103 ALKHLTLCLIDASPC--TFTKLEVRFHIAHLHEVQRK-----------------YKTAKDSYEQLLKEDDL--PVHLKAD 161 (324)
Q Consensus 103 A~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~~~~-----------------~~~A~~~~~~al~~~~~--~~~~~~~ 161 (324)
|+.++++++...+.. ......++..+|.++...|+ +++|+.++++++..... .....+.
T Consensus 145 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 224 (411)
T 4a1s_A 145 AAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGR 224 (411)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999998763221 22345789999999999999 99999999999875310 1112256
Q ss_pred HHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHH------HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-
Q psy8160 162 ICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQ------SLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN- 234 (324)
Q Consensus 162 ~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~------~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~- 234 (324)
++..+|.++.. .+++++|+.+++++++..|.... ++..+|.++...|++++|+..|++++.+.|..
T Consensus 225 ~~~~la~~~~~-------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 297 (411)
T 4a1s_A 225 ACGNLGNTYYL-------LGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELG 297 (411)
T ss_dssp HHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH-------cCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC
Confidence 88999999977 55999999999999998776543 89999999999999999999999999988754
Q ss_pred -----HHHHHHhHHHHhhcCCCHHHHHHHH-----------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCC
Q psy8160 235 -----ADTWCSIGNKDFSNNSNREDYHQAL-----------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIA 292 (324)
Q Consensus 235 -----~~~~~~lg~~~~~~~~~~~~A~~~~-----------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p 292 (324)
..++..+|.++...|+ +++|+.+| .++..+|.+|...|++++ |+.+|++++++.+
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~--A~~~~~~al~~~~ 374 (411)
T 4a1s_A 298 EREVEAQSCYSLGNTYTLLHE-FNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHER--ALKYAEQHLQLAX 374 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHH--HHHHHHHHHHHHh
Confidence 6788999999999999 99999998 488999999999999999 9999999999887
Q ss_pred Ch
Q psy8160 293 SC 294 (324)
Q Consensus 293 ~~ 294 (324)
..
T Consensus 375 ~~ 376 (411)
T 4a1s_A 375 XX 376 (411)
T ss_dssp HH
T ss_pred hc
Confidence 53
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=8.3e-24 Score=175.91 Aligned_cols=227 Identities=12% Similarity=0.074 Sum_probs=197.4
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHh----cccHHHHHHHHHHHHHhcCCCcccHHHHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKV----NNEYDSALKHLTLCLIDASPCTFTKLEVR 125 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 125 (324)
.+++++.+|.++...|++++|+.+|++++. |.+..++..+|.++.. .+++++|+.+|++++... . ..++
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~----~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD-LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--Y----SNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C----HHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--C----HHHH
Confidence 566899999999999999999999999985 6667888889999999 999999999999998764 2 3789
Q ss_pred HHHHHHHHH----hhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH
Q psy8160 126 FHIAHLHEV----QRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG 201 (324)
Q Consensus 126 ~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 201 (324)
+.+|.++.. .+++++|+..|++++..+ + +.++..+|.++.... + ..+++++|+.+|+++++.. ++
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~--~~a~~~lg~~~~~~~--~-~~~~~~~A~~~~~~a~~~~--~~ 146 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK----Y--AEGCASLGGIYHDGK--V-VTRDFKKAVEYFTKACDLN--DG 146 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----C--HHHHHHHHHHHHHCS--S-SCCCHHHHHHHHHHHHHTT--CH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC----C--ccHHHHHHHHHHcCC--C-cccCHHHHHHHHHHHHhcC--cH
Confidence 999999999 999999999999999875 2 458999999986510 0 1348999999999999876 67
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhh----cCCCHHHHHHHH---------HHHHh
Q psy8160 202 QSLYLLGRCFAA----VGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFS----NNSNREDYHQAL---------NKYRD 264 (324)
Q Consensus 202 ~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~~A~~~~---------~~~~~ 264 (324)
.+++.+|.++.. .+++++|+.+|+++++. +++.+++.+|.+|.. .++ +++|+.+| .++++
T Consensus 147 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~-~~~A~~~~~~a~~~~~~~a~~~ 223 (273)
T 1ouv_A 147 DGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKN-FKEALARYSKACELENGGGCFN 223 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCC-HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCcc-HHHHHHHHHHHHhCCCHHHHHH
Confidence 889999999998 99999999999999887 468999999999999 999 99999999 78899
Q ss_pred hHHHHHH----cCCCCcchHHHHHHHhhhcCCChhhhhh
Q psy8160 265 LGDFLVI----NNIPTSNNNRQCYNSYSTSIASCKHINN 299 (324)
Q Consensus 265 lg~~~~~----~~~~~~~~A~~~~~~al~~~p~~~~~~~ 299 (324)
+|.+|.. .+++++ |+.+|+++++..|+++...-
T Consensus 224 l~~~~~~g~~~~~~~~~--A~~~~~~a~~~~~~~a~~~l 260 (273)
T 1ouv_A 224 LGAMQYNGEGVTRNEKQ--AIENFKKGCKLGAKGACDIL 260 (273)
T ss_dssp HHHHHHTTSSSSCCSTT--HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHcCCCcccCHHH--HHHHHHHHHHcCCHHHHHHH
Confidence 9999999 999999 99999999999998765443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-24 Score=170.46 Aligned_cols=174 Identities=16% Similarity=0.163 Sum_probs=131.2
Q ss_pred CchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHH
Q psy8160 83 PCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADI 162 (324)
Q Consensus 83 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 162 (324)
+..++..+|.++...|++++|++.|++++..+|.+. .++..+|.++...|++++|+..+.+++... |.. ..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~ 75 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNV----ETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTS--AEA 75 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCC--HHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chh--HHH
Confidence 344566677777777777777777777777777665 677777777777777777777777777777 665 347
Q ss_pred HHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhH
Q psy8160 163 CRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242 (324)
Q Consensus 163 ~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 242 (324)
+..+|.++.. .++++.|+..+.+++..+|.++.++..+|.++...|++++|+..|+++++++|+++.+|..+|
T Consensus 76 ~~~~~~~~~~-------~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg 148 (184)
T 3vtx_A 76 YYILGSANFM-------IDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIG 148 (184)
T ss_dssp HHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHH-------cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHH
Confidence 7777777755 347777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhh
Q psy8160 243 NKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHI 297 (324)
Q Consensus 243 ~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 297 (324)
.+|...|+ +++ |+.+|++|++++|+++..
T Consensus 149 ~~~~~~g~------------------------~~~--A~~~~~~al~~~p~~a~~ 177 (184)
T 3vtx_A 149 LAYEGKGL------------------------RDE--AVKYFKKALEKEEKKAKY 177 (184)
T ss_dssp HHHHHTTC------------------------HHH--HHHHHHHHHHTTHHHHHH
T ss_pred HHHHHCCC------------------------HHH--HHHHHHHHHhCCccCHHH
Confidence 77666666 667 999999999999987653
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-24 Score=176.89 Aligned_cols=219 Identities=14% Similarity=0.117 Sum_probs=182.2
Q ss_pred ccccccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHH
Q psy8160 13 IVTSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKL 89 (324)
Q Consensus 13 ~~~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~ 89 (324)
...+..+..+|...+..+ ++|+..|+++++.+|+ ...+++.+|.++...|++++|+..|++++ .+|.+..++..
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 96 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE---DAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYG 96 (243)
T ss_dssp ----------------------CCTTHHHHHTTCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHH
Confidence 344555556666555555 9999999999999986 45689999999999999999999999999 99999999999
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHH
Q psy8160 90 EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWM 169 (324)
Q Consensus 90 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~ 169 (324)
+|.++...|++++|+..+++++...|... .++..+|.++...|++++|+..+++++... |.+ ..++..+|.+
T Consensus 97 la~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~--~~~~~~l~~~ 168 (243)
T 2q7f_A 97 AGNVYVVKEMYKEAKDMFEKALRAGMENG----DLFYMLGTVLVKLEQPKLALPYLQRAVELN--END--TEARFQFGMC 168 (243)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTCCSH----HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTC--HHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhccHHHHHHHHHHHHHhC--Ccc--HHHHHHHHHH
Confidence 99999999999999999999999888765 789999999999999999999999999998 877 4599999999
Q ss_pred HHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcC
Q psy8160 170 YHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNN 249 (324)
Q Consensus 170 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 249 (324)
+.. .+++++|+..++++++..|.++.++..+|.++...|++++|+..|+++++.+|+++.++..++.+....+
T Consensus 169 ~~~-------~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 169 LAN-------EGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHH-------HTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHH-------cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 977 4589999999999999999999999999999999999999999999999999999999999988766554
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.5e-24 Score=175.78 Aligned_cols=210 Identities=13% Similarity=0.055 Sum_probs=188.9
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Q psy8160 51 NEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIA 129 (324)
Q Consensus 51 ~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la 129 (324)
..+++.+|.++...|++++|+.+|++++ .+|.+..++..+|.++...|++++|++.+++++...|... .++..+|
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~la 112 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNA----RVLNNYG 112 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH----HHHHHHH
Confidence 6789999999999999999999999999 9999999999999999999999999999999999887764 7899999
Q ss_pred HHHHHhhcHHHHHHHHHHHHh--cCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHH
Q psy8160 130 HLHEVQRKYKTAKDSYEQLLK--EDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLL 207 (324)
Q Consensus 130 ~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 207 (324)
.++...|++++|+..|++++. .. |.. ..++..+|.++.. .+++++|+.+++++++..|.++.++..+
T Consensus 113 ~~~~~~g~~~~A~~~~~~~~~~~~~--~~~--~~~~~~la~~~~~-------~g~~~~A~~~~~~~~~~~~~~~~~~~~l 181 (252)
T 2ho1_A 113 GFLYEQKRYEEAYQRLLEASQDTLY--PER--SRVFENLGLVSLQ-------MKKPAQAKEYFEKSLRLNRNQPSVALEM 181 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTCTTC--TTH--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCSCCHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHhCccC--ccc--HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 999999999999999999998 44 555 5589999999977 4599999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHh
Q psy8160 208 GRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSY 287 (324)
Q Consensus 208 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~a 287 (324)
|.++...|++++|+..+++++...|.++..+..++.++...|+ +++ |...++++
T Consensus 182 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~------------------------~~~--A~~~~~~~ 235 (252)
T 2ho1_A 182 ADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFED------------------------RDT--AASYGLQL 235 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTC------------------------HHH--HHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccC------------------------HHH--HHHHHHHH
Confidence 9999999999999999999999999999888888888777777 556 88888889
Q ss_pred hhcCCChhhhhhch
Q psy8160 288 STSIASCKHINNNK 301 (324)
Q Consensus 288 l~~~p~~~~~~~~l 301 (324)
++.+|+++.....+
T Consensus 236 ~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 236 KRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHHCTTSHHHHHHH
T ss_pred HHHCCCCHHHHHHH
Confidence 99999888765543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.2e-24 Score=170.07 Aligned_cols=215 Identities=12% Similarity=0.084 Sum_probs=187.3
Q ss_pred ccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHH
Q psy8160 48 LRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRF 126 (324)
Q Consensus 48 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 126 (324)
+....+++.+|.++...|++++|+..|++++ .+|.+..++..+|.++...|++++|++.+++++...|... .++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~ 80 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSA----EINN 80 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh----HHHH
Confidence 3456789999999999999999999999999 9999999999999999999999999999999999887765 7899
Q ss_pred HHHHHHHHh-hcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHH
Q psy8160 127 HIAHLHEVQ-RKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLY 205 (324)
Q Consensus 127 ~la~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 205 (324)
.+|.++... |++++|+..+++++.....|.. ..++..+|.++.. .+++++|+.+++++++..|.++.++.
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~-------~~~~~~A~~~~~~~~~~~~~~~~~~~ 151 (225)
T 2vq2_A 81 NYGWFLCGRLNRPAESMAYFDKALADPTYPTP--YIANLNKGICSAK-------QGQFGLAEAYLKRSLAAQPQFPPAFK 151 (225)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCH--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHcCcCCcch--HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCCCchHHH
Confidence 999999999 9999999999999982111444 5589999999976 45999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCC-CCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHH
Q psy8160 206 LLGRCFAAVGKVHDAFLAYRNSVEKSE-GNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCY 284 (324)
Q Consensus 206 ~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~ 284 (324)
.+|.++...|++++|+..+++++..+| .++..+..++.++...|+ .++ |..++
T Consensus 152 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~--a~~~~ 205 (225)
T 2vq2_A 152 ELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGN------------------------AQA--AYEYE 205 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC------------------------HHH--HHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCc------------------------HHH--HHHHH
Confidence 999999999999999999999999999 888888777777777776 455 77777
Q ss_pred HHhhhcCCChhhhhhch
Q psy8160 285 NSYSTSIASCKHINNNK 301 (324)
Q Consensus 285 ~~al~~~p~~~~~~~~l 301 (324)
+.+.+.+|+++.+...+
T Consensus 206 ~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 206 AQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHCTTCHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHh
Confidence 77788888888765543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.4e-24 Score=177.86 Aligned_cols=246 Identities=11% Similarity=0.013 Sum_probs=190.9
Q ss_pred HHHHHHHHHHhccCCCc-ccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSY-LRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLT 108 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 108 (324)
++|++.|.++++..|.. +....+++.+|.++...|++++|+.+|++++ .+|.+..++..+|.++...|++++|+.+|+
T Consensus 22 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 101 (275)
T 1xnf_A 22 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFD 101 (275)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 89999999999985432 3467789999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHH
Q psy8160 109 LCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIH 188 (324)
Q Consensus 109 ~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~ 188 (324)
+++...|... .++..+|.++...|++++|+..|++++..+ |++.. .....+.+. . .+++++|+.
T Consensus 102 ~al~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~--~~~~~~~~~-~-------~~~~~~A~~ 165 (275)
T 1xnf_A 102 SVLELDPTYN----YAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPF--RSLWLYLAE-Q-------KLDEKQAKE 165 (275)
T ss_dssp HHHHHCTTCT----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHH--HHHHHHHHH-H-------HHCHHHHHH
T ss_pred HHHhcCcccc----HHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChH--HHHHHHHHH-H-------hcCHHHHHH
Confidence 9999888776 789999999999999999999999999988 77643 333333322 2 348999999
Q ss_pred HHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHH
Q psy8160 189 CLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDF 268 (324)
Q Consensus 189 ~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~ 268 (324)
.+++++...|.+...+. ++.++...++.++|+..+++++...|.... .. ..+|..+|.+
T Consensus 166 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~----~~~~~~la~~ 224 (275)
T 1xnf_A 166 VLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAE----------------HL----SETNFYLGKY 224 (275)
T ss_dssp HHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHH----------------HH----HHHHHHHHHH
T ss_pred HHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccc----------------cc----cHHHHHHHHH
Confidence 99999998888766654 677788888899999999999887664210 00 0345556666
Q ss_pred HHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHH
Q psy8160 269 LVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKY 319 (324)
Q Consensus 269 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~ 319 (324)
|...|++++ |+..|+++++.+|++..... ......+++.+|++.+
T Consensus 225 ~~~~g~~~~--A~~~~~~al~~~p~~~~~~~----~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 225 YLSLGDLDS--ATALFKLAVANNVHNFVEHR----YALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHTTCHHH--HHHHHHHHHTTCCTTCHHHH----HHHHHHHHHHHC----
T ss_pred HHHcCCHHH--HHHHHHHHHhCCchhHHHHH----HHHHHHHHHHhhHHHH
Confidence 666666788 89999999999987754331 1123467788887765
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-24 Score=189.13 Aligned_cols=259 Identities=12% Similarity=0.070 Sum_probs=215.7
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCc----hhhHHHHHHHHhcccHHHHHHHHHHHHHhcCC--CcccHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPC----TFTKLEGLMFKVNNEYDSALKHLTLCLIDASP--CTFTKL 122 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~ 122 (324)
...+++.+|.++...|++++|+.+|++++ .+|.+. .++..+|.++...|++++|+.++++++...+. ......
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 34578899999999999999999999999 888874 56777999999999999999999999765322 223446
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCc----hhhHHHHHHHHHHHhhhhhcccchh----------------
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVH----LKADICRQLGWMYHCIDTLGEKSHR---------------- 182 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~---------------- 182 (324)
.++..+|.++...|++++|+..+++++... |.. ..+.++..+|.++.. .++
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~l~~~~~~-------~g~~~~~~~~~~~~~~~~~ 158 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDIS--RELNDKVGEARALYNLGNVYHA-------KGKSFGCPGPQDVGEFPEE 158 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHTCHHHHHHHHHHHHHHHHH-------HHHTCC-------CCCCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HhcccccchHHHHHHHHHHHHH-------cCCcccccccchhhhhhhh
Confidence 789999999999999999999999999875 321 125689999999977 447
Q ss_pred ----HHHHHHHHHHHhhh------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH------HHHHhHHHHh
Q psy8160 183 ----ETLAIHCLQKSIEA------DPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNAD------TWCSIGNKDF 246 (324)
Q Consensus 183 ----~~~A~~~~~~al~~------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~lg~~~~ 246 (324)
+++|+.++++++.. .|....++..+|.++...|++++|+..+++++.+.|..+. ++..+|.++.
T Consensus 159 a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 238 (406)
T 3sf4_A 159 VRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI 238 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 99999999999876 3444578999999999999999999999999988766544 8999999999
Q ss_pred hcCCCHHHHHHHH-----------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCCh------hhhhhchhh
Q psy8160 247 SNNSNREDYHQAL-----------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASC------KHINNNKDF 303 (324)
Q Consensus 247 ~~~~~~~~A~~~~-----------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~ 303 (324)
..|+ +++|+..| .++..+|.+|...|++++ |+.+|++++++.|.. +.+...++.
T Consensus 239 ~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~--A~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 315 (406)
T 3sf4_A 239 FLGE-FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEK--AIDYHLKHLAIAQELNDRIGEGRACWSLGN 315 (406)
T ss_dssp HTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HcCC-hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHH--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 9999 99999998 578899999999999999 999999999986654 334445554
Q ss_pred hccCChhhHHHHHHHHhh
Q psy8160 304 SNNSNREDYHQALNKYRD 321 (324)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~ 321 (324)
+. ...|++++|+..|+.
T Consensus 316 ~~-~~~g~~~~A~~~~~~ 332 (406)
T 3sf4_A 316 AY-TALGNHDQAMHFAEK 332 (406)
T ss_dssp HH-HHHTCHHHHHHHHHH
T ss_pred HH-HHcCCHHHHHHHHHH
Confidence 43 456888888887764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-24 Score=174.38 Aligned_cols=202 Identities=15% Similarity=0.124 Sum_probs=155.2
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcC-CCcccHHHHHHHHHH
Q psy8160 52 EVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDAS-PCTFTKLEVRFHIAH 130 (324)
Q Consensus 52 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~~~~~la~ 130 (324)
+.++.+|.++...|++++|+..|++++ ...| .+. .+++.+|.
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al---------------------------------~~~~~~~~----~~~~~~~~ 50 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYL---------------------------------KLTNNQDS----VTAYNCGV 50 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH---------------------------------HHTTTCCH----HHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHH---------------------------------hccCCCCc----HHHHHHHH
Confidence 456666666666666666666666555 4433 222 56677888
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH-------HH
Q psy8160 131 LHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG-------QS 203 (324)
Q Consensus 131 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-------~~ 203 (324)
++...|++++|+..|++++..+ |.+ ..++..+|.++.. .+++++|+..++++++.+|.++ .+
T Consensus 51 ~~~~~~~~~~A~~~~~~al~~~--p~~--~~~~~~l~~~~~~-------~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 119 (228)
T 4i17_A 51 CADNIKKYKEAADYFDIAIKKN--YNL--ANAYIGKSAAYRD-------MKNNQEYIATLTEGIKAVPGNATIEKLYAIY 119 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTT--CSH--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHhhcHHHHHHHHHHHHHhC--cch--HHHHHHHHHHHHH-------cccHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence 8888888888888888888888 776 4488888888866 4588888888888888888888 66
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCC--CHHHHHHhHHHHhhcCCCH--HHHHHHH--HHHHhhHHHHHHcCCCCc
Q psy8160 204 LYLLGRCFAAVGKVHDAFLAYRNSVEKSEG--NADTWCSIGNKDFSNNSNR--EDYHQAL--NKYRDLGDFLVINNIPTS 277 (324)
Q Consensus 204 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~--~~A~~~~--~~~~~lg~~~~~~~~~~~ 277 (324)
|+.+|.++...|++++|+..|+++++++|+ ++.+|..+|.+|...|+ . ++|.... ......+......+.+++
T Consensus 120 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 198 (228)
T 4i17_A 120 YLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGA-DVLRKATPLASSNKEKYASEKAKADAAFKK 198 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH-HHHHHHGGGTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHH-HHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 99999999999998888 5 3332221 112223344555667899
Q ss_pred chHHHHHHHhhhcCCChhhhhhchhhh
Q psy8160 278 NNNRQCYNSYSTSIASCKHINNNKDFS 304 (324)
Q Consensus 278 ~~A~~~~~~al~~~p~~~~~~~~l~~~ 304 (324)
|+.+|+++++++|+++.+...+..+
T Consensus 199 --A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 199 --AVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp --HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred --HHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 9999999999999999988777654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-24 Score=191.23 Aligned_cols=261 Identities=13% Similarity=0.071 Sum_probs=215.5
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCc----hhhHHHHHHHHhcccHHHHHHHHHHHHHhcC--CCcccHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPC----TFTKLEGLMFKVNNEYDSALKHLTLCLIDAS--PCTFTKL 122 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~ 122 (324)
....++.+|..+...|++++|+.+|++++ .+|.+. .++..+|.++...|++++|+..+++++.... .......
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 45567899999999999999999999999 998876 4677899999999999999999999987621 2223445
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC--CCchhhHHHHHHHHHHHhhhhhcccchh-----------------H
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDL--PVHLKADICRQLGWMYHCIDTLGEKSHR-----------------E 183 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----------------~ 183 (324)
.++..+|.++...|++++|+..|++++..... .....+.++..+|.++.. .++ +
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~~~~~~~~~~~~a~~~~ 199 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHA-------KGKHLGQRNPGKFGDDVKEAL 199 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-------HHHHHHHHSTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH-------cCcccccccchhhhhhhhHHH
Confidence 78999999999999999999999999877310 111226689999999977 447 9
Q ss_pred HHHHHHHHHHhhhC------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH------HHHHhHHHHhhcCCC
Q psy8160 184 TLAIHCLQKSIEAD------PKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNAD------TWCSIGNKDFSNNSN 251 (324)
Q Consensus 184 ~~A~~~~~~al~~~------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~lg~~~~~~~~~ 251 (324)
++|+.++++++++. +....++..+|.++...|++++|+.++++++.+.|.... ++..+|.++...|+
T Consensus 200 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~- 278 (411)
T 4a1s_A 200 TRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQ- 278 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcC-
Confidence 99999999998764 334468999999999999999999999999998775543 88999999999999
Q ss_pred HHHHHHHH-----------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChh------hhhhchhhhccCC
Q psy8160 252 REDYHQAL-----------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCK------HINNNKDFSNNSN 308 (324)
Q Consensus 252 ~~~A~~~~-----------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~ 308 (324)
+++|+..| .++..+|.+|...|++++ |+.+|++++++.|... .+...++.+. ..
T Consensus 279 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~-~~ 355 (411)
T 4a1s_A 279 FEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNT--AIEYHNRHLAIAQELGDRIGEARACWSLGNAH-SA 355 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH-HH
Confidence 99999998 578899999999999999 9999999999866543 2444454443 45
Q ss_pred hhhHHHHHHHHhh
Q psy8160 309 REDYHQALNKYRD 321 (324)
Q Consensus 309 ~~~~~~a~~~~~~ 321 (324)
.|++.+|+..|+.
T Consensus 356 ~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 356 IGGHERALKYAEQ 368 (411)
T ss_dssp TTCHHHHHHHHHH
T ss_pred hccHHHHHHHHHH
Confidence 6888888887765
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=6.6e-24 Score=176.15 Aligned_cols=222 Identities=15% Similarity=0.134 Sum_probs=181.8
Q ss_pred cccccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHH
Q psy8160 14 VTSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLE 90 (324)
Q Consensus 14 ~~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~l 90 (324)
..+..+..+|......+ ++|++.|+++++++|+ ...+++.+|.++...|++++|+.+|++++ .+|.+..++..+
T Consensus 41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 117 (275)
T 1xnf_A 41 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD---MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR 117 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHH
Confidence 34556666777666555 9999999999999986 45689999999999999999999999999 999999999999
Q ss_pred HHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHH
Q psy8160 91 GLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMY 170 (324)
Q Consensus 91 a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~ 170 (324)
|.++...|++++|+..+++++...|... .....++ +....|++++|+..+++++... |+... .+ .++.++
T Consensus 118 a~~~~~~g~~~~A~~~~~~a~~~~~~~~----~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~--~~~~~--~~-~~~~~~ 187 (275)
T 1xnf_A 118 GIALYYGGRDKLAQDDLLAFYQDDPNDP----FRSLWLY-LAEQKLDEKQAKEVLKQHFEKS--DKEQW--GW-NIVEFY 187 (275)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHH-HHHHHHCHHHHHHHHHHHHHHS--CCCST--HH-HHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCCh----HHHHHHH-HHHHhcCHHHHHHHHHHHHhcC--CcchH--HH-HHHHHH
Confidence 9999999999999999999999888765 3333334 3467799999999999999988 65532 33 355555
Q ss_pred HhhhhhcccchhHHHHHHHHHHHhhhCCcc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHh
Q psy8160 171 HCIDTLGEKSHRETLAIHCLQKSIEADPKS----GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDF 246 (324)
Q Consensus 171 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 246 (324)
.. .++.++|+..+++++...|.. +.+++.+|.++...|++++|+..|++++..+|++...+ +.++.
T Consensus 188 ~~-------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~~~~ 257 (275)
T 1xnf_A 188 LG-------NISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH---RYALL 257 (275)
T ss_dssp TT-------SSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH---HHHHH
T ss_pred HH-------hcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH---HHHHH
Confidence 33 336789999999999887743 68999999999999999999999999999999875543 77888
Q ss_pred hcCCCHHHHHHHH
Q psy8160 247 SNNSNREDYHQAL 259 (324)
Q Consensus 247 ~~~~~~~~A~~~~ 259 (324)
..|+ +++|++.|
T Consensus 258 ~l~~-~~~a~~~~ 269 (275)
T 1xnf_A 258 ELSL-LGQDQDDL 269 (275)
T ss_dssp HHHH-HHHC----
T ss_pred HHHH-HHhhHHHH
Confidence 8888 88887764
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.2e-24 Score=191.47 Aligned_cols=212 Identities=15% Similarity=0.142 Sum_probs=183.6
Q ss_pred hccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccH-HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHH
Q psy8160 64 NNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEY-DSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTA 141 (324)
Q Consensus 64 ~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~-~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 141 (324)
.+.+++++..+..+. .+|.+..++..+|.++...|++ ++|++.|++++...|... .+++.+|.++...|++++|
T Consensus 81 ~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~----~a~~~lg~~~~~~g~~~~A 156 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELV----EAWNQLGEVYWKKGDVTSA 156 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHH
Confidence 456888999999888 8899999999999999999999 999999999999998876 8999999999999999999
Q ss_pred HHHHHHHHhcCCCCCchhhHHHHHHHHHHHhh--hhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHc-----
Q psy8160 142 KDSYEQLLKEDDLPVHLKADICRQLGWMYHCI--DTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAV----- 214 (324)
Q Consensus 142 ~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~----- 214 (324)
+.+|++++..+ |+ ..++..+|.++... .......+++++|+..|+++++.+|.++.+|+.+|.++...
T Consensus 157 ~~~~~~al~~~--p~---~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~ 231 (474)
T 4abn_A 157 HTCFSGALTHC--KN---KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTG 231 (474)
T ss_dssp HHHHHHHHTTC--CC---HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhC--CC---HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Confidence 99999999998 77 35999999999762 00000116999999999999999999999999999999999
Q ss_pred ---CCHHHHHHHHHHHHccCC---CCHHHHHHhHHHHhhcCCCHHHHHHHH-----------HHHHhhHHHHHHcCCCCc
Q psy8160 215 ---GKVHDAFLAYRNSVEKSE---GNADTWCSIGNKDFSNNSNREDYHQAL-----------NKYRDLGDFLVINNIPTS 277 (324)
Q Consensus 215 ---~~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~ 277 (324)
|++++|+..|++++.++| +++.+|+++|.+|...|+ +++|+..| .++..+|.++...|++++
T Consensus 232 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~e 310 (474)
T 4abn_A 232 QNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEES-YGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTS 310 (474)
T ss_dssp CCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 999999999999999999 77777766 556666777666666666
Q ss_pred chHHHHHHHh
Q psy8160 278 NNNRQCYNSY 287 (324)
Q Consensus 278 ~~A~~~~~~a 287 (324)
|+..+.+.
T Consensus 311 --Ai~~~~~~ 318 (474)
T 4abn_A 311 --LLESKGKT 318 (474)
T ss_dssp --HHHHTTTC
T ss_pred --HHHHhccc
Confidence 66655544
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-23 Score=169.87 Aligned_cols=186 Identities=11% Similarity=0.059 Sum_probs=154.4
Q ss_pred ccccccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHH
Q psy8160 13 IVTSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKL 89 (324)
Q Consensus 13 ~~~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~ 89 (324)
..+|+.+..+|...+..+ ++|++.|+++++++|. ....+++.+|.++...|++++|+.+|++++ .+|.+.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----- 76 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNN--QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLA----- 76 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHH-----
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCC--CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchH-----
Confidence 345677777887766666 9999999999999972 234578889999999999999999999877 666543
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchh-----hHHHH
Q psy8160 90 EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK-----ADICR 164 (324)
Q Consensus 90 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-----~~~~~ 164 (324)
.++..+|.++...|++++|+..|++++..+ |++.. +.++.
T Consensus 77 ---------------------------------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~ 121 (228)
T 4i17_A 77 ---------------------------------NAYIGKSAAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYL 121 (228)
T ss_dssp ---------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHH
T ss_pred ---------------------------------HHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHH
Confidence 556777778888888888888888888877 66542 14688
Q ss_pred HHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCc--cHHHHHHHHHHHHHcCCH-------------------------
Q psy8160 165 QLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPK--SGQSLYLLGRCFAAVGKV------------------------- 217 (324)
Q Consensus 165 ~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~lg~~~~~~~~~------------------------- 217 (324)
.+|.++.. .+++++|+..|+++++.+|+ ++.+++.+|.++...|+.
T Consensus 122 ~~g~~~~~-------~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 194 (228)
T 4i17_A 122 KEGQKFQQ-------AGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADA 194 (228)
T ss_dssp HHHHHHHH-------TTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHH-------hccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 88888866 55999999999999999999 999999999999999988
Q ss_pred --HHHHHHHHHHHccCCCCHHHHHHhHHHHhh
Q psy8160 218 --HDAFLAYRNSVEKSEGNADTWCSIGNKDFS 247 (324)
Q Consensus 218 --~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 247 (324)
++|+.+|+++++++|+++.+...++.+...
T Consensus 195 ~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~ 226 (228)
T 4i17_A 195 AFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAM 226 (228)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999988877654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.1e-24 Score=180.43 Aligned_cols=260 Identities=12% Similarity=0.059 Sum_probs=212.3
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCc----hhhHHHHHHHHhcccHHHHHHHHHHHHHhcCC--CcccHHH
Q psy8160 51 NEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPC----TFTKLEGLMFKVNNEYDSALKHLTLCLIDASP--CTFTKLE 123 (324)
Q Consensus 51 ~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~ 123 (324)
...++..|.++...|++++|+.+|++++ .+|.+. .++..+|.++...|++++|+..+++++...+. .......
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 3467888999999999999999999999 888874 56677999999999999999999999765222 2223457
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCC--chhhHHHHHHHHHHHhhhhhcccchh-------------------
Q psy8160 124 VRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPV--HLKADICRQLGWMYHCIDTLGEKSHR------------------- 182 (324)
Q Consensus 124 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~------------------- 182 (324)
++..+|.++...|++++|+..+++++....... ...+.++..+|.++.. .++
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~a~~ 157 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA-------KGKSFGCPGPQDTGEFPEDVRN 157 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------HHHTSSSSSCC----CCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-------cCcccccchhhhhhhhhhhHHH
Confidence 899999999999999999999999987651111 1125688899999977 346
Q ss_pred -HHHHHHHHHHHhhh------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC------HHHHHHhHHHHhhcC
Q psy8160 183 -ETLAIHCLQKSIEA------DPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN------ADTWCSIGNKDFSNN 249 (324)
Q Consensus 183 -~~~A~~~~~~al~~------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~ 249 (324)
+++|+.++++++.. .|....++..+|.++...|++++|+..+++++.+.|.. ..++..+|.++...|
T Consensus 158 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g 237 (338)
T 3ro2_A 158 ALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG 237 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC
Confidence 99999999999876 33345789999999999999999999999999876544 338899999999999
Q ss_pred CCHHHHHHHH-----------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChh------hhhhchhhhcc
Q psy8160 250 SNREDYHQAL-----------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCK------HINNNKDFSNN 306 (324)
Q Consensus 250 ~~~~~A~~~~-----------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~ 306 (324)
+ +++|+..+ .++..+|.++...|++++ |+.+|+++++..|... .+...++.+.
T Consensus 238 ~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~--A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~- 313 (338)
T 3ro2_A 238 E-FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEK--AIDYHLKHLAIAQELKDRIGEGRACWSLGNAY- 313 (338)
T ss_dssp C-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-
T ss_pred C-HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH-
Confidence 9 99999988 577899999999999999 9999999999876543 2444444432
Q ss_pred CChhhHHHHHHHHhh
Q psy8160 307 SNREDYHQALNKYRD 321 (324)
Q Consensus 307 ~~~~~~~~a~~~~~~ 321 (324)
...|++++|+..|+.
T Consensus 314 ~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 314 TALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHTCHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHH
Confidence 456888888887764
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.4e-22 Score=179.36 Aligned_cols=246 Identities=13% Similarity=0.105 Sum_probs=159.3
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHH----hccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHh----cccHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKV----NNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKV----NNEYD 101 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~----~~~~~ 101 (324)
++|+++|+++++.. ...+++.+|.+|.. .+++++|+++|++++ . .+..+...+|.++.. .++++
T Consensus 168 ~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~ 240 (490)
T 2xm6_A 168 VMAREWYSKAAEQG-----NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYT 240 (490)
T ss_dssp HHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHHCC-----CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHH
Confidence 55555555555432 23455555555555 555666666665555 2 233445555555554 55666
Q ss_pred HHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH----hhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhc
Q psy8160 102 SALKHLTLCLIDASPCTFTKLEVRFHIAHLHEV----QRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLG 177 (324)
Q Consensus 102 ~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 177 (324)
+|+.+|++++.... ..+++.+|.++.. .+++++|+..|+++.+.. + +.+++.+|.++.... .|
T Consensus 241 ~A~~~~~~a~~~~~------~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~--~----~~a~~~Lg~~y~~~~-~g 307 (490)
T 2xm6_A 241 QSRVLFSQSAEQGN------SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG--N----SDGQYYLAHLYDKGA-EG 307 (490)
T ss_dssp HHHHHHHHHHTTTC------HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT--C----HHHHHHHHHHHHHCB-TT
T ss_pred HHHHHHHHHHHCCC------HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC--C----HHHHHHHHHHHHcCC-CC
Confidence 66666666654321 2456667777666 667777777777766543 2 336677777775410 00
Q ss_pred ccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHccCCCCHHHHHHhHHHHhh----cCC
Q psy8160 178 EKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVG---KVHDAFLAYRNSVEKSEGNADTWCSIGNKDFS----NNS 250 (324)
Q Consensus 178 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~ 250 (324)
..+++++|+.+|+++++.. ++.+++.+|.++...| ++++|+.+|+++++. .++.+++.+|.+|.. .++
T Consensus 308 -~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~ 382 (490)
T 2xm6_A 308 -VAKNREQAISWYTKSAEQG--DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKD 382 (490)
T ss_dssp -BCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC
T ss_pred -CcCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCC
Confidence 0237777888888877653 4677777888877755 677888888888765 567888888888887 777
Q ss_pred CHHHHHHHH---------HHHHhhHHHHHH----cCCCCcchHHHHHHHhhhcCC---Chhhhhhchhhh
Q psy8160 251 NREDYHQAL---------NKYRDLGDFLVI----NNIPTSNNNRQCYNSYSTSIA---SCKHINNNKDFS 304 (324)
Q Consensus 251 ~~~~A~~~~---------~~~~~lg~~~~~----~~~~~~~~A~~~~~~al~~~p---~~~~~~~~l~~~ 304 (324)
+++|+.+| .++++||.+|.. .+++++ |+..|++|++.+| +++.+..+++.+
T Consensus 383 -~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~--A~~~~~~A~~~~~~~~~~~~a~~~l~~~ 449 (490)
T 2xm6_A 383 -EQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQ--AWAWFDTASTNDMNLFGTENRNITEKKL 449 (490)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHH--HHHHHHHHHHHHCCHHHHHHHHHHHTTS
T ss_pred -HHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHH--HHHHHHHHHHCCCCCcCCHHHHHHHHhc
Confidence 88888888 677888888887 677888 8888888888874 477776666654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.6e-23 Score=180.54 Aligned_cols=231 Identities=11% Similarity=0.052 Sum_probs=192.5
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHh-c---CCC---CchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCc---ccHH
Q psy8160 53 VHLRLGLMFKVNNEYDSALKHLTLCL-I---DAS---PCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCT---FTKL 122 (324)
Q Consensus 53 ~~~~lg~~~~~~~~~~~A~~~~~~al-~---~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~ 122 (324)
.++.+|.++...|++++|+.+|++++ . .++ ...++..+|.++...|++++|+.++++++...+... ....
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 45569999999999999999999998 5 232 456777899999999999999999999988754442 2445
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCC--chhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhh-----
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPV--HLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIE----- 195 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~----- 195 (324)
.++..+|.++...|++++|+.+|++++......+ ...+.++.++|.++.. .|++++|+.+++++++
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~-------~g~~~~A~~~~~~al~~~~~~ 257 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNS-------QSQYEDAIPYFKRAIAVFEES 257 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHHHHhh
Confidence 7899999999999999999999999997751111 1225689999999977 5599999999999998
Q ss_pred hC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC-----CCCHHHHHHhHHHHhhcCCCH---HHHHHHH-------
Q psy8160 196 AD-PKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKS-----EGNADTWCSIGNKDFSNNSNR---EDYHQAL------- 259 (324)
Q Consensus 196 ~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~lg~~~~~~~~~~---~~A~~~~------- 259 (324)
.+ |..+.++..+|.++...|++++|+.++++++.+. |.....+..+|.++...|+ + .+|+..+
T Consensus 258 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~al~~~~~~~~~~ 336 (383)
T 3ulq_A 258 NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPD-EEAIQGFFDFLESKMLYA 336 (383)
T ss_dssp TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCC-HHHHHHHHHHHHHTTCHH
T ss_pred ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHCcCHH
Confidence 56 7888999999999999999999999999999884 3334446779999999987 5 3444444
Q ss_pred ---HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCC
Q psy8160 260 ---NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIAS 293 (324)
Q Consensus 260 ---~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~ 293 (324)
.++..+|.+|...|++++ |+.+|++++++...
T Consensus 337 ~~~~~~~~la~~y~~~g~~~~--A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 337 DLEDFAIDVAKYYHERKNFQK--ASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHHHHH
Confidence 688899999999999999 99999999987654
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.8e-22 Score=178.11 Aligned_cols=260 Identities=13% Similarity=0.105 Sum_probs=165.9
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHH----hccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHh----cccHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKV----NNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKV----NNEYD 101 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~----~~~~~ 101 (324)
++|+++|+++.+.. ...+++.+|.+|.. .+++++|+++|++++ . .+..+...+|.+|.. .++++
T Consensus 132 ~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~ 204 (490)
T 2xm6_A 132 AESVKWFRLAAEQG-----RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDA 204 (490)
T ss_dssp HHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHH
Confidence 55555555554432 23345555555554 455555555555555 3 234455555555555 55555
Q ss_pred HHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH----hhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhc
Q psy8160 102 SALKHLTLCLIDASPCTFTKLEVRFHIAHLHEV----QRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLG 177 (324)
Q Consensus 102 ~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 177 (324)
+|+++|++++.... ..+++.+|.++.. .+++++|+..|++++... + +.+++.+|.++.... |
T Consensus 205 ~A~~~~~~a~~~~~------~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~----~~a~~~lg~~y~~g~--~ 270 (490)
T 2xm6_A 205 ISAQWYRKSATSGD------ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG--N----SIAQFRLGYILEQGL--A 270 (490)
T ss_dssp HHHHHHHHHHHTTC------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT--C----HHHHHHHHHHHHHTT--T
T ss_pred HHHHHHHHHHHCCC------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--C----HHHHHHHHHHHHCCC--C
Confidence 55555555554321 2455566666654 556666666666665543 2 336666666664310 0
Q ss_pred ccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcC---
Q psy8160 178 EKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAV-----GKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNN--- 249 (324)
Q Consensus 178 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~-----~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~--- 249 (324)
..+++++|+.+|+++.+. .++.+++.+|.++... +++++|+.+|+++++. .++.+++.+|.+|...|
T Consensus 271 -~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~ 345 (490)
T 2xm6_A 271 -GAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEE 345 (490)
T ss_dssp -SSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHH
T ss_pred -CCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcc
Confidence 133778888888887655 4567788888888877 7888888888888765 46778888888887755
Q ss_pred CCHHHHHHHH---------HHHHhhHHHHHH----cCCCCcchHHHHHHHhhhcCCChhhhhhchhhhccC---ChhhHH
Q psy8160 250 SNREDYHQAL---------NKYRDLGDFLVI----NNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNS---NREDYH 313 (324)
Q Consensus 250 ~~~~~A~~~~---------~~~~~lg~~~~~----~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~---~~~~~~ 313 (324)
+ +++|+.+| .++++||.+|.. .+++++ |+.+|+++++.. ++.+..+++.+... ..+++.
T Consensus 346 ~-~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~--A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~ 420 (490)
T 2xm6_A 346 E-HKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQ--AAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYV 420 (490)
T ss_dssp H-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHH--HHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred c-HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHH--HHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHH
Confidence 6 77888887 778888888888 778888 888888888753 56677777765432 257788
Q ss_pred HHHHHHhh
Q psy8160 314 QALNKYRD 321 (324)
Q Consensus 314 ~a~~~~~~ 321 (324)
+|+..|+.
T Consensus 421 ~A~~~~~~ 428 (490)
T 2xm6_A 421 QAWAWFDT 428 (490)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887764
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-22 Score=164.83 Aligned_cols=207 Identities=14% Similarity=0.046 Sum_probs=184.1
Q ss_pred ccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHH
Q psy8160 17 VRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLM 93 (324)
Q Consensus 17 ~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~ 93 (324)
..+..+|......+ ++|++.|+++++.+|+ ...+++.+|.++...|++++|++.|++++ .+|.+..++..+|.+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS---SADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHH
Confidence 33444555444444 9999999999999986 35689999999999999999999999999 999999999999999
Q ss_pred HHhcccHHHHHHHHHHHHH--hcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHH
Q psy8160 94 FKVNNEYDSALKHLTLCLI--DASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYH 171 (324)
Q Consensus 94 ~~~~~~~~~A~~~~~~~l~--~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~ 171 (324)
+...|++++|++.+++++. ..| ....++..+|.++...|++++|+..|++++... |.+ ..++..+|.++.
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~--~~~~~~la~~~~ 186 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYP----ERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--RNQ--PSVALEMADLLY 186 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCT----THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCC--HHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCc----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--ccc--HHHHHHHHHHHH
Confidence 9999999999999999997 333 335789999999999999999999999999998 877 458999999997
Q ss_pred hhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHh
Q psy8160 172 CIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSI 241 (324)
Q Consensus 172 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 241 (324)
. .+++++|+.+++++++..|.++..+..++.++...|++++|...+++++...|+++.++..+
T Consensus 187 ~-------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 187 K-------EREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp H-------TTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred H-------cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 7 55999999999999999999999999999999999999999999999999999999887654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.91 E-value=4.5e-22 Score=168.49 Aligned_cols=211 Identities=6% Similarity=0.039 Sum_probs=184.2
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHH-------hccH-------HHHHHHHHHHh-c-CCCCchhhHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKV-------NNEY-------DSALKHLTLCL-I-DASPCTFTKLEGLMF 94 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~-------~~~~-------~~A~~~~~~al-~-~~~~~~~~~~la~~~ 94 (324)
++|+..|++++..+|+ .+++|+.+|..+.. .|++ ++|+..|++++ . +|++..++..+|.++
T Consensus 33 ~~a~~~~~~al~~~p~---~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH---HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 7899999999999986 46689999998874 4775 99999999999 4 899999999999999
Q ss_pred HhcccHHHHHHHHHHHHHhcCCCcccHHH-HHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhh
Q psy8160 95 KVNNEYDSALKHLTLCLIDASPCTFTKLE-VRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCI 173 (324)
Q Consensus 95 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~ 173 (324)
...|++++|...|++++...|... . ++..+|.++...|++++|+..|++++... |.. ..++...+.+...
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~--~~~~~~~a~~~~~- 180 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDIDP----TLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTR--HHVYVTAALMEYY- 180 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSSCT----HHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCC--THHHHHHHHHHHH-
T ss_pred HhcCCHHHHHHHHHHHHhccccCc----cHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCC--HHHHHHHHHHHHH-
Confidence 999999999999999999877654 4 89999999999999999999999999988 766 3366665555422
Q ss_pred hhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc---CC-CCHHHHHHhHHHHhhcC
Q psy8160 174 DTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEK---SE-GNADTWCSIGNKDFSNN 249 (324)
Q Consensus 174 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p-~~~~~~~~lg~~~~~~~ 249 (324)
. .|++++|+..|+++++.+|.++.+|..+|..+...|++++|+..|++++.. .| +...+|..++..+...|
T Consensus 181 -~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g 255 (308)
T 2ond_A 181 -C----SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 255 (308)
T ss_dssp -T----SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHS
T ss_pred -H----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 1 248999999999999999999999999999999999999999999999995 55 37889999999999999
Q ss_pred CCHHHHHHHH
Q psy8160 250 SNREDYHQAL 259 (324)
Q Consensus 250 ~~~~~A~~~~ 259 (324)
+ +++|...+
T Consensus 256 ~-~~~a~~~~ 264 (308)
T 2ond_A 256 D-LASILKVE 264 (308)
T ss_dssp C-HHHHHHHH
T ss_pred C-HHHHHHHH
Confidence 9 88877665
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.9e-22 Score=158.74 Aligned_cols=212 Identities=13% Similarity=0.037 Sum_probs=187.2
Q ss_pred cccccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHH
Q psy8160 14 VTSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLE 90 (324)
Q Consensus 14 ~~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~l 90 (324)
.++..+..+|......+ ++|++.|+++++.+|+ ...+++.+|.++...|++++|+.+|++++ .+|.+...+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 82 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK---NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY 82 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc---chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence 34455556666555555 9999999999999986 35689999999999999999999999999 999999999999
Q ss_pred HHHHHhc-ccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHH
Q psy8160 91 GLMFKVN-NEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWM 169 (324)
Q Consensus 91 a~~~~~~-~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~ 169 (324)
|.++... |++++|+..+++++. .| .......++..+|.++...|++++|+..|++++... |.+ ..++..+|.+
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~--~~~~~~la~~ 156 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALA-DP-TYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--PQF--PPAFKELART 156 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHT-ST-TCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTC--HHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHc-Cc-CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC--chHHHHHHHH
Confidence 9999999 999999999999998 22 222345789999999999999999999999999998 877 4599999999
Q ss_pred HHhhhhhcccchhHHHHHHHHHHHhhhCC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHh
Q psy8160 170 YHCIDTLGEKSHRETLAIHCLQKSIEADP-KSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSI 241 (324)
Q Consensus 170 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 241 (324)
+.. .+++++|+..++++++..| .++..+..++.++...|++++|..+++.++..+|+++.++..+
T Consensus 157 ~~~-------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 157 KML-------AGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHH-------HTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHH-------cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 977 4599999999999999999 9999999999999999999999999999999999999887655
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.1e-23 Score=193.23 Aligned_cols=172 Identities=12% Similarity=0.109 Sum_probs=159.7
Q ss_pred ccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHH
Q psy8160 48 LRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRF 126 (324)
Q Consensus 48 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 126 (324)
|..++++..||.++..+|++++|+++|++++ ++|++..++..+|.++..+|++++|+..|++++...|... ++++
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~----~a~~ 81 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA----DAYS 81 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHH
Confidence 5577899999999999999999999999999 9999999999999999999999999999999999988876 8999
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHH
Q psy8160 127 HIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYL 206 (324)
Q Consensus 127 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 206 (324)
++|.++..+|++++|++.|+++++++ |++ +.++.++|.++.. .|++++|+..|+++++++|+++.++.+
T Consensus 82 nLg~~l~~~g~~~~A~~~~~kAl~l~--P~~--~~a~~~Lg~~~~~-------~g~~~eAi~~~~~Al~l~P~~~~a~~~ 150 (723)
T 4gyw_A 82 NMGNTLKEMQDVQGALQCYTRAIQIN--PAF--ADAHSNLASIHKD-------SGNIPEAIASYRTALKLKPDFPDAYCN 150 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCSCCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CCC--HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCCChHHHhh
Confidence 99999999999999999999999999 888 5599999999977 559999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCC
Q psy8160 207 LGRCFAAVGKVHDAFLAYRNSVEKSEGN 234 (324)
Q Consensus 207 lg~~~~~~~~~~~A~~~~~~al~~~p~~ 234 (324)
+|.++...|++++|++.+++++++.|+.
T Consensus 151 L~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 151 LAHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp HHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred hhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 9999999999999999999999876543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.8e-23 Score=190.91 Aligned_cols=156 Identities=14% Similarity=0.192 Sum_probs=129.2
Q ss_pred CCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchh
Q psy8160 80 DASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK 159 (324)
Q Consensus 80 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 159 (324)
.|++..++..+|.++..+|++++|++.|++++...|... .+++++|.++..+|++++|+..|+++++++ |++
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~----~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~-- 76 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA----AAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTF-- 76 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC--
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC--
Confidence 577777888888888888888888888888888887765 788888888888888888888888888888 877
Q ss_pred hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHH
Q psy8160 160 ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWC 239 (324)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 239 (324)
+.++.++|.++.. .+++++|+..|+++++++|+++.+|+++|.++...|++++|+..|+++++++|+++.++.
T Consensus 77 ~~a~~nLg~~l~~-------~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~ 149 (723)
T 4gyw_A 77 ADAYSNMGNTLKE-------MQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYC 149 (723)
T ss_dssp HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHh
Confidence 4588888888866 448888888888888888888888888888888888888888888888888888888887
Q ss_pred HhHHHHhhcCC
Q psy8160 240 SIGNKDFSNNS 250 (324)
Q Consensus 240 ~lg~~~~~~~~ 250 (324)
++|.++...|+
T Consensus 150 ~L~~~l~~~g~ 160 (723)
T 4gyw_A 150 NLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHHHTTC
T ss_pred hhhhHHHhccc
Confidence 77777777777
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-23 Score=176.46 Aligned_cols=239 Identities=15% Similarity=0.161 Sum_probs=188.6
Q ss_pred CCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-c--------CCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcC
Q psy8160 45 PSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-I--------DASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDAS 115 (324)
Q Consensus 45 p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~ 115 (324)
|+.|....+++.+|.++...|++++|+.+|++++ . +|....++..+|.++...|++++|+..+++++....
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 21 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4556677899999999999999999999999999 5 456667788899999999999999999999987631
Q ss_pred ----CCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCC----CCCchhhHHHHHHHHHHHhhhhhcccchhHHHHH
Q psy8160 116 ----PCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDD----LPVHLKADICRQLGWMYHCIDTLGEKSHRETLAI 187 (324)
Q Consensus 116 ----~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~ 187 (324)
........++..+|.++...|++++|+.+|++++.... ........++..+|.++.. .+++++|+
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-------~~~~~~A~ 173 (311)
T 3nf1_A 101 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQN-------QGKYEEVE 173 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT-------TTCHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-------cCCHHHHH
Confidence 11223457899999999999999999999999997620 0112236689999999976 55999999
Q ss_pred HHHHHHhhh--------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC---------CCCHHHHHHhHHHHh----
Q psy8160 188 HCLQKSIEA--------DPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKS---------EGNADTWCSIGNKDF---- 246 (324)
Q Consensus 188 ~~~~~al~~--------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~lg~~~~---- 246 (324)
.+++++++. .|....++..+|.++...|++++|+..+++++... +.....|...+.+..
T Consensus 174 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (311)
T 3nf1_A 174 YYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGK 253 (311)
T ss_dssp HHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCc
Confidence 999999988 77778899999999999999999999999999753 334444444444443
Q ss_pred --hcCCCHHHHHHHH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCC
Q psy8160 247 --SNNSNREDYHQAL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIAS 293 (324)
Q Consensus 247 --~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~ 293 (324)
..+. +.+|+..+ .++..+|.+|...|++++ |+.+|++++++.|.
T Consensus 254 ~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~--A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 254 QKDGTS-FGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEA--AETLEEAAMRSRKQ 310 (311)
T ss_dssp ----CC-SCCCC---------CHHHHHHHHHHHHHHHHHTCHHH--HHHHHHHHHHHHC-
T ss_pred hhhHHH-HHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHHhhc
Confidence 3333 33333333 788999999999999999 99999999998875
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.3e-22 Score=166.56 Aligned_cols=214 Identities=13% Similarity=0.097 Sum_probs=178.3
Q ss_pred hhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-c--CCCCchhhHHHHHHHH
Q psy8160 21 KLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-I--DASPCTFTKLEGLMFK 95 (324)
Q Consensus 21 ~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~--~~~~~~~~~~la~~~~ 95 (324)
.+++..+..+ +.|+..++. .+ +....++..++..+...+++++|++.+++++ . +|++..++..+|.++.
T Consensus 39 ~l~r~yi~~g~~~~al~~~~~---~~---~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~ 112 (291)
T 3mkr_A 39 FLYRAYLAQRKYGVVLDEIKP---SS---APELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYF 112 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHSCT---TS---CHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHhcc---cC---ChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHH
Confidence 3444444444 777775544 12 3356688889999999999999999999988 5 5999999999999999
Q ss_pred hcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhh
Q psy8160 96 VNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDT 175 (324)
Q Consensus 96 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~ 175 (324)
..|++++|++.+++ |.+ .+++..+|.++..+|++++|+..|++++..+ |++.. .....+++....
T Consensus 113 ~~g~~~~Al~~l~~-----~~~----~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~--~~l~~a~~~l~~-- 177 (291)
T 3mkr_A 113 YDQNPDAALRTLHQ-----GDS----LECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATL--TQLATAWVSLAA-- 177 (291)
T ss_dssp HTTCHHHHHHHHTT-----CCS----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHH--HHHHHHHHHHHH--
T ss_pred HCCCHHHHHHHHhC-----CCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHH--HHHHHHHHHHHh--
Confidence 99999999998886 433 3789999999999999999999999999998 87632 333333333221
Q ss_pred hcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHH
Q psy8160 176 LGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDY 255 (324)
Q Consensus 176 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A 255 (324)
+ .+++++|+..|+++++.+|.++.+|+.+|.++...|++++|+..|++++..+|+++++|.++|.++...|+ +.++
T Consensus 178 -~--~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~-~~ea 253 (291)
T 3mkr_A 178 -G--GEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGK-PPEV 253 (291)
T ss_dssp -C--TTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-CHHH
T ss_pred -C--chHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-CHHH
Confidence 1 45999999999999999999999999999999999999999999999999999999999999999999999 8775
Q ss_pred -HHHH
Q psy8160 256 -HQAL 259 (324)
Q Consensus 256 -~~~~ 259 (324)
..++
T Consensus 254 a~~~~ 258 (291)
T 3mkr_A 254 TNRYL 258 (291)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 4554
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.7e-22 Score=163.32 Aligned_cols=194 Identities=12% Similarity=0.076 Sum_probs=166.8
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCC---chhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASP---CTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVR 125 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 125 (324)
..+.++.+|..++..|++++|+..|++++ .+|.+ ..++..+|.++...|++++|+..|++++...|.+. ....++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP-RVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT-THHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc-hhHHHH
Confidence 56789999999999999999999999999 99998 78889999999999999999999999999987664 334789
Q ss_pred HHHHHHHHH--------hhcHHHHHHHHHHHHhcCCCCCchh-hHHH--------------HHHHHHHHhhhhhcccchh
Q psy8160 126 FHIAHLHEV--------QRKYKTAKDSYEQLLKEDDLPVHLK-ADIC--------------RQLGWMYHCIDTLGEKSHR 182 (324)
Q Consensus 126 ~~la~~~~~--------~~~~~~A~~~~~~al~~~~~~~~~~-~~~~--------------~~l~~~~~~~~~~~~~~~~ 182 (324)
+.+|.++.. .|++++|+..|++++... |++.. ..+. +.+|.++.. .|+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~-------~g~ 163 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYER-------REL 163 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TTC
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------ccC
Confidence 999999999 999999999999999999 77644 2222 788888876 559
Q ss_pred HHHHHHHHHHHhhhCCc---cHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHccCCCCH---HHHHHhHHHHh
Q psy8160 183 ETLAIHCLQKSIEADPK---SGQSLYLLGRCFAAV----------GKVHDAFLAYRNSVEKSEGNA---DTWCSIGNKDF 246 (324)
Q Consensus 183 ~~~A~~~~~~al~~~~~---~~~~~~~lg~~~~~~----------~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~ 246 (324)
+++|+..|+++++..|+ .+.+++.+|.++... |++++|+..|+++++..|+++ .+...++.++.
T Consensus 164 ~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~ 243 (261)
T 3qky_A 164 YEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQ 243 (261)
T ss_dssp HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 99999999999999888 567999999999977 889999999999999999985 45556677776
Q ss_pred hcCCCHHH
Q psy8160 247 SNNSNRED 254 (324)
Q Consensus 247 ~~~~~~~~ 254 (324)
..++ +++
T Consensus 244 ~~~~-~~~ 250 (261)
T 3qky_A 244 RLTE-LEG 250 (261)
T ss_dssp HHHH-HHT
T ss_pred HHHH-hhh
Confidence 6666 544
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=3.6e-21 Score=159.90 Aligned_cols=219 Identities=13% Similarity=0.180 Sum_probs=188.7
Q ss_pred cccccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHH----hccHHHHHHHHHHHh-cCCCCchh
Q psy8160 14 VTSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKV----NNEYDSALKHLTLCL-IDASPCTF 86 (324)
Q Consensus 14 ~~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al-~~~~~~~~ 86 (324)
.++.....+|......+ ++|+++|+++++ |+ ...+++.+|.++.. .+++++|+.+|++++ .+ +..+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a 76 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNG 76 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHH
Confidence 34555666776655555 999999999998 43 34689999999999 999999999999999 65 6788
Q ss_pred hHHHHHHHHh----cccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH----hhcHHHHHHHHHHHHhcCCCCCch
Q psy8160 87 TKLEGLMFKV----NNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEV----QRKYKTAKDSYEQLLKEDDLPVHL 158 (324)
Q Consensus 87 ~~~la~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~ 158 (324)
+..+|.++.. .+++++|+..|++++... . ..+++.+|.++.. .+++++|+.+|++++..+ +
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~----~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~--- 145 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--Y----AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--D--- 145 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C----HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--C---
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--C----ccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--c---
Confidence 8999999999 999999999999999763 2 3789999999999 999999999999999876 3
Q ss_pred hhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCC
Q psy8160 159 KADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAA----VGKVHDAFLAYRNSVEKSEGN 234 (324)
Q Consensus 159 ~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~ 234 (324)
..++..+|.++.... + ..+++++|+.+|+++++.. ++.+++.+|.++.. .+++++|+.+|+++++.+|
T Consensus 146 -~~a~~~lg~~~~~~~--~-~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-- 217 (273)
T 1ouv_A 146 -GDGCTILGSLYDAGR--G-TPKDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-- 217 (273)
T ss_dssp -HHHHHHHHHHHHHTS--S-SCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--
T ss_pred -HHHHHHHHHHHHcCC--C-CCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--
Confidence 448899999996511 0 1348999999999999874 57899999999999 9999999999999999876
Q ss_pred HHHHHHhHHHHhh----cCCCHHHHHHHH
Q psy8160 235 ADTWCSIGNKDFS----NNSNREDYHQAL 259 (324)
Q Consensus 235 ~~~~~~lg~~~~~----~~~~~~~A~~~~ 259 (324)
+.+++.+|.+|.. .++ +++|+.+|
T Consensus 218 ~~a~~~l~~~~~~g~~~~~~-~~~A~~~~ 245 (273)
T 1ouv_A 218 GGGCFNLGAMQYNGEGVTRN-EKQAIENF 245 (273)
T ss_dssp HHHHHHHHHHHHTTSSSSCC-STTHHHHH
T ss_pred HHHHHHHHHHHHcCCCcccC-HHHHHHHH
Confidence 8999999999999 999 99999988
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-21 Score=170.19 Aligned_cols=232 Identities=12% Similarity=0.029 Sum_probs=191.9
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHh-cC------CCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCc---ccHH
Q psy8160 53 VHLRLGLMFKVNNEYDSALKHLTLCL-ID------ASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCT---FTKL 122 (324)
Q Consensus 53 ~~~~lg~~~~~~~~~~~A~~~~~~al-~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~ 122 (324)
.++..|..+...|++++|+.+|++++ .. |....++..+|.++...|+++.|+.++++++...+... ...+
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 57889999999999999999999998 52 22345677799999999999999999999988755433 2456
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC--CCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhh-----
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDL--PVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIE----- 195 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~----- 195 (324)
.++..+|.++...|++++|+++|++++..... .....+.++.++|.++.. .+++++|+.+++++++
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~-------~~~~~~A~~~~~~al~~~~~~ 255 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDR-------SGDDQMAVEHFQKAAKVSREK 255 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHHHHhh
Confidence 78999999999999999999999999986411 111236789999999977 4599999999999999
Q ss_pred hCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-----CCHHHHHHhHHHHhhcCCC--HHHHHHHH---------
Q psy8160 196 ADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSE-----GNADTWCSIGNKDFSNNSN--REDYHQAL--------- 259 (324)
Q Consensus 196 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~~~~--~~~A~~~~--------- 259 (324)
.+|..+.+++.+|.++...|++++|+.++++++.+.+ .....+..++.++...++. +.+|+..+
T Consensus 256 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~ 335 (378)
T 3q15_A 256 VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYI 335 (378)
T ss_dssp CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHH
Confidence 7888889999999999999999999999999999854 3345566778888777650 34555555
Q ss_pred -HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCC
Q psy8160 260 -NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIAS 293 (324)
Q Consensus 260 -~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~ 293 (324)
.++..+|.+|...|++++ |+.+|+++++....
T Consensus 336 ~~~~~~la~~y~~~g~~~~--A~~~~~~al~~~~~ 368 (378)
T 3q15_A 336 EACARSAAAVFESSCHFEQ--AAAFYRKVLKAQED 368 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHH--HHHHHHHHHHHHHH
Confidence 678899999999999999 99999999986543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-21 Score=170.57 Aligned_cols=293 Identities=12% Similarity=0.026 Sum_probs=216.3
Q ss_pred ccchhhhHhHHHHH----HHHHHHHHHHhccCCCcccchHH--HHHH--HHHHHHhccHHHHH-----------HHHHHH
Q psy8160 17 VRVPKLQQFGKTLN----IKAIKTFQQLLYVDPSYLRANEV--HLRL--GLMFKVNNEYDSAL-----------KHLTLC 77 (324)
Q Consensus 17 ~~~~~l~~~~~~~~----~~A~~~~~~~l~~~p~~~~~~~~--~~~l--g~~~~~~~~~~~A~-----------~~~~~a 77 (324)
.+...|......+. ++|...+..+.+..+....+.++ ++.+ .......++++.+. +.++++
T Consensus 11 ~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i 90 (383)
T 3ulq_A 11 SIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEI 90 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHH
Confidence 34444555444333 89999999887755442222222 3332 22223445555555 555554
Q ss_pred hcCCCCch------hhHHHHHHHHhcccHHHHHHHHHHHHHhcCC--CcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q psy8160 78 LIDASPCT------FTKLEGLMFKVNNEYDSALKHLTLCLIDASP--CTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLL 149 (324)
Q Consensus 78 l~~~~~~~------~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 149 (324)
-..|.+.. .+..+|.++...|++++|+..|++++..... +....+.+++.+|.++...|++++|+.++++++
T Consensus 91 ~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al 170 (383)
T 3ulq_A 91 DKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAY 170 (383)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhcCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33333322 2334899999999999999999999876322 222456889999999999999999999999999
Q ss_pred hcCCCCCc---hhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH------HHHHHHHHHHHHcCCHHHH
Q psy8160 150 KEDDLPVH---LKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG------QSLYLLGRCFAAVGKVHDA 220 (324)
Q Consensus 150 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~~~lg~~~~~~~~~~~A 220 (324)
......+. ..+.++..+|.++.. .|++++|+.+++++++..|... .++.++|.++...|++++|
T Consensus 171 ~~~~~~~~~~~~~~~~~~~lg~~~~~-------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A 243 (383)
T 3ulq_A 171 EIYKEHEAYNIRLLQCHSLFATNFLD-------LKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDA 243 (383)
T ss_dssp HHHHTCSTTHHHHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhCccchHHHHHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHH
Confidence 87521211 126689999999977 5599999999999998755433 5899999999999999999
Q ss_pred HHHHHHHHc-----cC-CCCHHHHHHhHHHHhhcCCCHHHHHHHH----------------HHHHhhHHHHHHcCC---C
Q psy8160 221 FLAYRNSVE-----KS-EGNADTWCSIGNKDFSNNSNREDYHQAL----------------NKYRDLGDFLVINNI---P 275 (324)
Q Consensus 221 ~~~~~~al~-----~~-p~~~~~~~~lg~~~~~~~~~~~~A~~~~----------------~~~~~lg~~~~~~~~---~ 275 (324)
+.+|++++. .+ |..+.++..+|.++...|+ +++|+.++ ..+..+|.+|...|+ +
T Consensus 244 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 322 (383)
T 3ulq_A 244 IPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGK-IDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI 322 (383)
T ss_dssp HHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHH
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHH
Confidence 999999999 56 8889999999999999999 99999998 235679999999998 8
Q ss_pred CcchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHhh
Q psy8160 276 TSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYRD 321 (324)
Q Consensus 276 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 321 (324)
.+ |+..+++. ...|....+...++.+. ...|++++|+..|+.
T Consensus 323 ~~--al~~~~~~-~~~~~~~~~~~~la~~y-~~~g~~~~A~~~~~~ 364 (383)
T 3ulq_A 323 QG--FFDFLESK-MLYADLEDFAIDVAKYY-HERKNFQKASAYFLK 364 (383)
T ss_dssp HH--HHHHHHHT-TCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHH
T ss_pred HH--HHHHHHHC-cCHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHH
Confidence 88 99988887 44455555666666553 457889999988865
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-21 Score=163.97 Aligned_cols=214 Identities=14% Similarity=0.061 Sum_probs=174.8
Q ss_pred cHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCC--cccHHHHHHHHHHHHHHhhcHHHHHH
Q psy8160 66 EYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPC--TFTKLEVRFHIAHLHEVQRKYKTAKD 143 (324)
Q Consensus 66 ~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~ 143 (324)
++++|+.+|.++ |.+|...|++++|+.+|++++...+.. ....+.++.++|.++...|++++|+.
T Consensus 32 ~~~~A~~~~~~a-------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 98 (292)
T 1qqe_A 32 KFEEAADLCVQA-------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVD 98 (292)
T ss_dssp HHHHHHHHHHHH-------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHH-------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 599999999865 678888999999999999998764332 22335789999999999999999999
Q ss_pred HHHHHHhcCCCCCch--hhHHHHHHHHHHHhhhhhcccc-hhHHHHHHHHHHHhhhCCcc------HHHHHHHHHHHHHc
Q psy8160 144 SYEQLLKEDDLPVHL--KADICRQLGWMYHCIDTLGEKS-HRETLAIHCLQKSIEADPKS------GQSLYLLGRCFAAV 214 (324)
Q Consensus 144 ~~~~al~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~~~~------~~~~~~lg~~~~~~ 214 (324)
+|++++.+.....+. .+.++..+|.+|.. . +++++|+.+|++++++.|.. ..++..+|.++..+
T Consensus 99 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-------~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~ 171 (292)
T 1qqe_A 99 SLENAIQIFTHRGQFRRGANFKFELGEILEN-------DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALD 171 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-------hhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh
Confidence 999999886211221 15688999999965 3 49999999999999988754 46789999999999
Q ss_pred CCHHHHHHHHHHHHccCCCCHH-------HHHHhHHHHhhcCCCHHHHHHHH----------------HHHHhhHHHHH-
Q psy8160 215 GKVHDAFLAYRNSVEKSEGNAD-------TWCSIGNKDFSNNSNREDYHQAL----------------NKYRDLGDFLV- 270 (324)
Q Consensus 215 ~~~~~A~~~~~~al~~~p~~~~-------~~~~lg~~~~~~~~~~~~A~~~~----------------~~~~~lg~~~~- 270 (324)
|++++|+..|++++.+.|+++. ++.++|.++...|+ +++|+.+| ..+..++..+.
T Consensus 172 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~ 250 (292)
T 1qqe_A 172 GQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATD-AVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNE 250 (292)
T ss_dssp TCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTC-HHHHHHHHHGGGCC---------HHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHc
Confidence 9999999999999999988754 67899999999999 99999999 23455666665
Q ss_pred -HcCCCCcchHHHHHHHhhhcCCChhhhhhchh
Q psy8160 271 -INNIPTSNNNRQCYNSYSTSIASCKHINNNKD 302 (324)
Q Consensus 271 -~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 302 (324)
..+++++ |+..|++++.++|.+..+...+.
T Consensus 251 ~~~~~~~~--A~~~~~~~~~l~~~~~~~~~~~k 281 (292)
T 1qqe_A 251 GDSEQLSE--HCKEFDNFMRLDKWKITILNKIK 281 (292)
T ss_dssp TCTTTHHH--HHHHHTTSSCCCHHHHHHHHHHH
T ss_pred CCHHHHHH--HHHHhccCCccHHHHHHHHHHHH
Confidence 3467888 99999999999998776655443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-20 Score=168.21 Aligned_cols=178 Identities=11% Similarity=0.091 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHHhhcHHHHHHH----HHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCC
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDS----YEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADP 198 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~----~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 198 (324)
.+.+.+|.++...+.++++... ++.+...+ +.+++.+|.+|..... ..++++|+.+|+++.+..|
T Consensus 142 ~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~-------~~a~~~Lg~~~~~~g~----~~~~~~A~~~~~~aa~~g~ 210 (452)
T 3e4b_A 142 EAGLAQVLLYRTQGTYDQHLDDVERICKAALNTT-------DICYVELATVYQKKQQ----PEQQAELLKQMEAGVSRGT 210 (452)
T ss_dssp THHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTC-------TTHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHcCC----cccHHHHHHHHHHHHHCCC
Confidence 4566677777776644444433 33333222 2288888988866211 2289999999999999999
Q ss_pred ccHHHHHHHHHHHHHc----CCHHHHHHHHHHHHccCCCCHHHHHHhHHH-H--hhcCCCHHHHHHHH---------HHH
Q psy8160 199 KSGQSLYLLGRCFAAV----GKVHDAFLAYRNSVEKSEGNADTWCSIGNK-D--FSNNSNREDYHQAL---------NKY 262 (324)
Q Consensus 199 ~~~~~~~~lg~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~lg~~-~--~~~~~~~~~A~~~~---------~~~ 262 (324)
..+..++.+|.+|... +++++|+.+|+++. |+++.+++++|.+ + ...++ +++|+.+| .++
T Consensus 211 ~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d-~~~A~~~~~~Aa~~g~~~A~ 286 (452)
T 3e4b_A 211 VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGD-VEQMMKYLDNGRAADQPRAE 286 (452)
T ss_dssp SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCC-HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHCCCHHHH
Confidence 9999889999999766 79999999999997 8999999999998 4 56788 99999999 788
Q ss_pred HhhHHHHHHcC-----CCCcchHHHHHHHhhhcCCChhhhhhchhhhccCC---hhhHHHHHHHHhh
Q psy8160 263 RDLGDFLVINN-----IPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSN---REDYHQALNKYRD 321 (324)
Q Consensus 263 ~~lg~~~~~~~-----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---~~~~~~a~~~~~~ 321 (324)
++||.+|. .| ++++ |+.+|+++. |+++.+..+++.+.... ..++.+|+..|+.
T Consensus 287 ~~Lg~~y~-~G~g~~~d~~~--A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 347 (452)
T 3e4b_A 287 LLLGKLYY-EGKWVPADAKA--AEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLT 347 (452)
T ss_dssp HHHHHHHH-HCSSSCCCHHH--HHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCCCCCHHH--HHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence 99999998 44 8888 999999998 88899988888764432 3588999888875
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.4e-21 Score=154.55 Aligned_cols=159 Identities=11% Similarity=0.066 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHH----------------HHHHHHhhhhhcccchhHHHH
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQ----------------LGWMYHCIDTLGEKSHRETLA 186 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~~~~~~~~A 186 (324)
+.++..|..+...|++++|+..|++++..+ |++ +.+++. +|.++.. .|++++|
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~~~~~~~~~~~~~lg~~~~~-------~g~~~~A 73 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALN--IDR--TEMYYWTNVDKNSEISSKLATELALAYKK-------NRNYDKA 73 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHH--HHHHHHHHSCTTSHHHHHHHHHHHHHHHH-------TTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCC--hHHHHHhhhcchhhhhHHHHHHHHHHHHH-------CCCHHHH
Confidence 567778888899999999999999999988 876 447777 9999977 5599999
Q ss_pred HHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCH--HHHHHHH-----
Q psy8160 187 IHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNR--EDYHQAL----- 259 (324)
Q Consensus 187 ~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~--~~A~~~~----- 259 (324)
+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.+|+.+|.+|...+. . ..+...|
T Consensus 74 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~-~~~~~~~~~~~~~~~ 152 (208)
T 3urz_A 74 YLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE-QEKKKLETDYKKLSS 152 (208)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH-HHHHHHHHHHC---C
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999987765 4 4455555
Q ss_pred -----HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChh
Q psy8160 260 -----NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCK 295 (324)
Q Consensus 260 -----~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (324)
.+++.+|.++...|++++ |+.+|+++++++|++.
T Consensus 153 ~~~~~~a~~~~g~~~~~~~~~~~--A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 153 PTKMQYARYRDGLSKLFTTRYEK--ARNSLQKVILRFPSTE 191 (208)
T ss_dssp CCHHHHHHHHHHHHHHHHHTHHH--HHHHHHHHTTTSCCHH
T ss_pred CCchhHHHHHHHHHHHHccCHHH--HHHHHHHHHHhCCCHH
Confidence 467889999999999999 9999999999999864
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.87 E-value=4.9e-20 Score=167.57 Aligned_cols=279 Identities=13% Similarity=0.069 Sum_probs=190.0
Q ss_pred HHHHHhhhhccccccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cC
Q psy8160 4 VIQKNLVEGIVTSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-ID 80 (324)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~ 80 (324)
++++.+...+.+...+..++.. ...+ ++|...|+++++..|. +..+|..+|..+...|++++|...|++++ ..
T Consensus 1 ~le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~---~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~ 76 (530)
T 2ooe_A 1 MAEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPS---SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV 76 (530)
T ss_dssp CHHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC
T ss_pred ChhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Confidence 3567777778888888777764 2222 9999999999999986 46689999999999999999999999999 88
Q ss_pred CCCchhhHHHHH-HHHhcccHHHHHH----HHHHHHHhcCCCcccHHHHHHHHHHHHHH---------hhcHHHHHHHHH
Q psy8160 81 ASPCTFTKLEGL-MFKVNNEYDSALK----HLTLCLIDASPCTFTKLEVRFHIAHLHEV---------QRKYKTAKDSYE 146 (324)
Q Consensus 81 ~~~~~~~~~la~-~~~~~~~~~~A~~----~~~~~l~~~~~~~~~~~~~~~~la~~~~~---------~~~~~~A~~~~~ 146 (324)
| +...+...+. +....|++++|.+ .|++++...+... ....+|...+.+... .|++++|...|+
T Consensus 77 p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~-~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~ 154 (530)
T 2ooe_A 77 L-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEI-MSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQ 154 (530)
T ss_dssp C-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTST-TCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHH
T ss_pred C-ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCc-ccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHH
Confidence 9 5667766664 4455677777665 7888876533222 124677777776655 789999999999
Q ss_pred HHHhcCCCCCchhhHHHHHHHHH--------------------------HH-------hhhh------------------
Q psy8160 147 QLLKEDDLPVHLKADICRQLGWM--------------------------YH-------CIDT------------------ 175 (324)
Q Consensus 147 ~al~~~~~~~~~~~~~~~~l~~~--------------------------~~-------~~~~------------------ 175 (324)
+++. . |.......|...... +. ....
T Consensus 155 ~al~-~--P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~ 231 (530)
T 2ooe_A 155 RGCV-N--PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVD 231 (530)
T ss_dssp HHTT-S--CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHH
T ss_pred HHHh-c--hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHH
Confidence 9998 3 432111122111100 00 0000
Q ss_pred ---------hc--ccchh----HHHHHHHHHHHhhhCCccHHHHHHHHHHHHH-------cCCHH-------HHHHHHHH
Q psy8160 176 ---------LG--EKSHR----ETLAIHCLQKSIEADPKSGQSLYLLGRCFAA-------VGKVH-------DAFLAYRN 226 (324)
Q Consensus 176 ---------~~--~~~~~----~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~-------~~~~~-------~A~~~~~~ 226 (324)
.+ ...++ ...++..|++++..+|.++.+|+.+|..+.. .|+++ +|+..|++
T Consensus 232 ~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~ 311 (530)
T 2ooe_A 232 MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYER 311 (530)
T ss_dssp HHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHH
Confidence 00 00001 2356677888888888888888888887775 67766 78888888
Q ss_pred HHc-cCCCCHHHHHHhHHHHhhcCCCHHHHHHHH------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCC
Q psy8160 227 SVE-KSEGNADTWCSIGNKDFSNNSNREDYHQAL------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIAS 293 (324)
Q Consensus 227 al~-~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~ 293 (324)
++. ..|+++.+|..+|.++...|+ +++|...| .+|..+|.++...|++++ |+..|++|++..|.
T Consensus 312 Al~~~~p~~~~l~~~~~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~--A~~~~~~Al~~~~~ 388 (530)
T 2ooe_A 312 AISTLLKKNMLLYFAYADYEESRMK-YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKS--GRMIFKKAREDART 388 (530)
T ss_dssp HTTTTCSSCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHTCTTC
T ss_pred HHHHhCcccHHHHHHHHHHHHhcCC-HHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHH--HHHHHHHHHhccCC
Confidence 886 678888888888888888888 88887777 256666665555555555 55555555555444
Q ss_pred h
Q psy8160 294 C 294 (324)
Q Consensus 294 ~ 294 (324)
+
T Consensus 389 ~ 389 (530)
T 2ooe_A 389 R 389 (530)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.3e-22 Score=150.35 Aligned_cols=146 Identities=12% Similarity=0.129 Sum_probs=122.1
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHH
Q psy8160 90 EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWM 169 (324)
Q Consensus 90 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~ 169 (324)
||.++...|++++|+..+++++...|... ..++.+|.+|...|++++|++.|++++..+ |++ +.++..+|.+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~----~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~--~~a~~~lg~~ 74 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKS----IKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERD--PKAHRFLGLL 74 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHH----TTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC--HHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC--HHHHHHHHHH
Confidence 46666666777777777777765544433 668899999999999999999999999999 888 5599999999
Q ss_pred HHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHH-HHHHHccCCCCHHHHHHhHHHHhhc
Q psy8160 170 YHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLA-YRNSVEKSEGNADTWCSIGNKDFSN 248 (324)
Q Consensus 170 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~-~~~al~~~p~~~~~~~~lg~~~~~~ 248 (324)
+.. .+++++|+.+|+++++++|+++.+++.+|.++...|++++|... ++++++++|+++.++..++.++...
T Consensus 75 ~~~-------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~ 147 (150)
T 4ga2_A 75 YEL-------EENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCE 147 (150)
T ss_dssp HHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTC
T ss_pred HHH-------cCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 977 55999999999999999999999999999999999999887765 5899999999999999999999888
Q ss_pred CC
Q psy8160 249 NS 250 (324)
Q Consensus 249 ~~ 250 (324)
|+
T Consensus 148 G~ 149 (150)
T 4ga2_A 148 GE 149 (150)
T ss_dssp CC
T ss_pred Cc
Confidence 75
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.1e-20 Score=154.63 Aligned_cols=216 Identities=13% Similarity=0.069 Sum_probs=141.7
Q ss_pred HHHHHHHHHHh-cCCCCchhhHHHHHHHHhcc--cHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH----HHh---hc
Q psy8160 68 DSALKHLTLCL-IDASPCTFTKLEGLMFKVNN--EYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLH----EVQ---RK 137 (324)
Q Consensus 68 ~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~----~~~---~~ 137 (324)
++|+..+.++| ++|.+..++...+.++...| ++++++.++++++..+|.+. .+|...+.++ ... ++
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y----~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNY----QIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCC----HHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccH----HHHHHHHHHHHHHHHhccccCC
Confidence 45666666666 66666666666666666666 66666666666666666665 5666666665 444 56
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHH--HHHHHHHHHhhhCCccHHHHHHHHHHHHHcC
Q psy8160 138 YKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRET--LAIHCLQKSIEADPKSGQSLYLLGRCFAAVG 215 (324)
Q Consensus 138 ~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 215 (324)
+++++..+.+++..+ |.+.. +|...+++... .+.++ +++.++.++++.+|.+..+|...+.+....+
T Consensus 126 ~~~EL~~~~~~l~~~--pkny~--aW~~R~~vl~~-------l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~ 194 (306)
T 3dra_A 126 PYREFDILEAMLSSD--PKNHH--VWSYRKWLVDT-------FDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKK 194 (306)
T ss_dssp THHHHHHHHHHHHHC--TTCHH--HHHHHHHHHHH-------TTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSG
T ss_pred HHHHHHHHHHHHHhC--CCCHH--HHHHHHHHHHH-------hcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Confidence 666666666666666 66644 66666666644 22444 6666666666666666666666666666666
Q ss_pred C------HHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH---------------HHHHhhHHHHHHcCC
Q psy8160 216 K------VHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL---------------NKYRDLGDFLVINNI 274 (324)
Q Consensus 216 ~------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~---------------~~~~~lg~~~~~~~~ 274 (324)
. ++++++++.+++..+|.+..+|..++.++...|. ...++..| .++..++.+|.+.|+
T Consensus 195 ~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~ 273 (306)
T 3dra_A 195 HLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDR-SITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKK 273 (306)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC-CGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTC
T ss_pred ccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCC-ChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCC
Confidence 5 6666666666666677666666666666666666 44444433 455666777777777
Q ss_pred CCcchHHHHHHHhhh-cCCChhhhhhch
Q psy8160 275 PTSNNNRQCYNSYST-SIASCKHINNNK 301 (324)
Q Consensus 275 ~~~~~A~~~~~~al~-~~p~~~~~~~~l 301 (324)
.++ |+++|+.+.+ .||-....+...
T Consensus 274 ~~~--A~~~~~~l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 274 YNE--SRTVYDLLKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp HHH--HHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHH--HHHHHHHHHhccChHHHHHHHHH
Confidence 888 9999999986 899887776654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-20 Score=150.90 Aligned_cols=179 Identities=13% Similarity=0.056 Sum_probs=152.8
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHH----------------HHHHHHhcccHHHHHHHHHHHHHh
Q psy8160 51 NEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKL----------------EGLMFKVNNEYDSALKHLTLCLID 113 (324)
Q Consensus 51 ~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~----------------la~~~~~~~~~~~A~~~~~~~l~~ 113 (324)
.+.++..|..+...|++++|+.+|++++ .+|++..++.. +|.++...|++++|+..|++++..
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4568899999999999999999999999 99999999999 999999999999999999999999
Q ss_pred cCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHH
Q psy8160 114 ASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKS 193 (324)
Q Consensus 114 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a 193 (324)
.|.+. .+++.+|.++...|++++|+..|++++.++ |++ +.++..+|.+++... ....+.+...+.++
T Consensus 84 ~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~--~~a~~~lg~~~~~~~-----~~~~~~~~~~~~~~ 150 (208)
T 3urz_A 84 APNNV----DCLEACAEMQVCRGQEKDALRMYEKILQLE--ADN--LAANIFLGNYYYLTA-----EQEKKKLETDYKKL 150 (208)
T ss_dssp CTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHHHH-----HHHHHHHHHHHC--
T ss_pred CCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCC--HHHHHHHHHHHHHHh-----HHHHHHHHHHHHHH
Confidence 99886 899999999999999999999999999999 988 559999999986522 23566778888887
Q ss_pred hhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHH
Q psy8160 194 IEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNK 244 (324)
Q Consensus 194 l~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 244 (324)
+...| ...+++.+|.++...|++++|+..|+++++++|+ ......+..+
T Consensus 151 ~~~~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~-~~~~~~l~~i 199 (208)
T 3urz_A 151 SSPTK-MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS-TEAQKTLDKI 199 (208)
T ss_dssp -CCCH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC-HHHHHHHHHH
T ss_pred hCCCc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHH
Confidence 65443 2357888999999999999999999999999997 4444444443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.2e-20 Score=145.17 Aligned_cols=172 Identities=17% Similarity=0.199 Sum_probs=157.1
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHI 128 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~l 128 (324)
...+++.+|.++...|++++|+..|++++ .+|.+...+..+|.++...|++++|+..+++++...|... .++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~ 82 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNV----KVATVL 82 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----HHHHHH
Confidence 45688999999999999999999999999 9999999999999999999999999999999998877665 789999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHH
Q psy8160 129 AHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLG 208 (324)
Q Consensus 129 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg 208 (324)
|.++...|++++|+..+++++... |.+ ..++..+|.++.. .+++++|+.+++++++..|.++.++..+|
T Consensus 83 a~~~~~~~~~~~A~~~~~~~~~~~--~~~--~~~~~~~a~~~~~-------~~~~~~A~~~~~~~~~~~~~~~~~~~~la 151 (186)
T 3as5_A 83 GLTYVQVQKYDLAVPLLIKVAEAN--PIN--FNVRFRLGVALDN-------LGRFDEAIDSFKIALGLRPNEGKVHRAIA 151 (186)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcC--cHh--HHHHHHHHHHHHH-------cCcHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 999999999999999999999998 777 4588999999976 45899999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCHH
Q psy8160 209 RCFAAVGKVHDAFLAYRNSVEKSEGNAD 236 (324)
Q Consensus 209 ~~~~~~~~~~~A~~~~~~al~~~p~~~~ 236 (324)
.++...|++++|+..+++++..+|+++.
T Consensus 152 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 152 FSYEQMGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence 9999999999999999999999887653
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-20 Score=155.93 Aligned_cols=206 Identities=11% Similarity=0.100 Sum_probs=168.1
Q ss_pred cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCch
Q psy8160 79 IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHL 158 (324)
Q Consensus 79 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 158 (324)
.+|.+......+|..+...|++++|+..|++++...|.+. ....+++.+|.++...|++++|+..|++++... |++.
T Consensus 10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--p~~~ 86 (261)
T 3qky_A 10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHE-WAADAQFYLARAYYQNKEYLLAASEYERFIQIY--QIDP 86 (261)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCST-THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCT
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCc-chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC--CCCc
Confidence 5788888899999999999999999999999999888763 224889999999999999999999999999998 6543
Q ss_pred h-hHHHHHHHHHHHhhhh-hcccchhHHHHHHHHHHHhhhCCccHHHH-----------------HHHHHHHHHcCCHHH
Q psy8160 159 K-ADICRQLGWMYHCIDT-LGEKSHRETLAIHCLQKSIEADPKSGQSL-----------------YLLGRCFAAVGKVHD 219 (324)
Q Consensus 159 ~-~~~~~~l~~~~~~~~~-~~~~~~~~~~A~~~~~~al~~~~~~~~~~-----------------~~lg~~~~~~~~~~~ 219 (324)
. ..+++.+|.++..... .....+++++|+..|+++++.+|+++.++ +.+|.++...|++++
T Consensus 87 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 166 (261)
T 3qky_A 87 RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEA 166 (261)
T ss_dssp THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence 2 6789999999965110 00013499999999999999999987655 889999999999999
Q ss_pred HHHHHHHHHccCCC---CHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhh
Q psy8160 220 AFLAYRNSVEKSEG---NADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKH 296 (324)
Q Consensus 220 A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 296 (324)
|+..|++++...|+ .+.+++.+|.+|...|+ ...+ ....|++++ |+..|+++++.+|+++.
T Consensus 167 A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~-~~~~-------------~~~~~~~~~--A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 167 AAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAE-QSVR-------------ARQPERYRR--AVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHH-TSCG-------------GGHHHHHHH--HHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcc-cchh-------------hcccchHHH--HHHHHHHHHHHCCCChH
Confidence 99999999999998 46788888888887765 2111 123466888 99999999999999987
Q ss_pred hhhchhh
Q psy8160 297 INNNKDF 303 (324)
Q Consensus 297 ~~~~l~~ 303 (324)
+......
T Consensus 231 ~~~a~~~ 237 (261)
T 3qky_A 231 LRTAEEL 237 (261)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-21 Score=147.55 Aligned_cols=141 Identities=12% Similarity=0.076 Sum_probs=118.4
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHH
Q psy8160 127 HIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYL 206 (324)
Q Consensus 127 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 206 (324)
.||.++...|++++|+..+++++..+ |.. +..++.+|.+|+. .+++++|+.+|+++++++|+++.+|+.
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~--p~~--~~~~~~la~~y~~-------~~~~~~A~~~~~~al~~~p~~~~a~~~ 70 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSP--RQK--SIKGFYFAKLYYE-------AKEYDLAKKYICTYINVQERDPKAHRF 70 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSH--HHH--HTTHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccC--ccc--HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 47888888999999999999998877 765 5588899999977 559999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHH-HH
Q psy8160 207 LGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQC-YN 285 (324)
Q Consensus 207 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~-~~ 285 (324)
+|.++...|++++|+..|+++++++|+++++|+.+|.++...|+ +++ |+.. ++
T Consensus 71 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~------------------------~~~--aa~~~~~ 124 (150)
T 4ga2_A 71 LGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDV------------------------TDG--RAKYWVE 124 (150)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCS------------------------SSS--HHHHHHH
T ss_pred HHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------------------hHH--HHHHHHH
Confidence 99999999999999999999999999999988888888777776 677 7776 48
Q ss_pred HhhhcCCChhhhhhchhhh
Q psy8160 286 SYSTSIASCKHINNNKDFS 304 (324)
Q Consensus 286 ~al~~~p~~~~~~~~l~~~ 304 (324)
+|++++|+++.+......+
T Consensus 125 ~al~l~P~~~~~~~l~~~l 143 (150)
T 4ga2_A 125 RAAKLFPGSPAVYKLKEQL 143 (150)
T ss_dssp HHHHHSTTCHHHHHHHHHH
T ss_pred HHHHhCcCCHHHHHHHHHH
Confidence 9999999999987766544
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.86 E-value=8.1e-21 Score=177.38 Aligned_cols=189 Identities=10% Similarity=0.032 Sum_probs=156.7
Q ss_pred cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHH--------HhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHh
Q psy8160 79 IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCL--------IDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLK 150 (324)
Q Consensus 79 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l--------~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 150 (324)
.+|++..+....+ ...|++++|++.+++++ ...|.+. ++++.+|.++...|++++|+..|+++++
T Consensus 389 ~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~----~~~~~~a~~~~~~g~~~~A~~~~~~al~ 461 (681)
T 2pzi_A 389 VDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESV----ELPLMEVRALLDLGDVAKATRKLDDLAE 461 (681)
T ss_dssp CCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCS----HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccch----hHHHHHHHHHHhcCCHHHHHHHHHHHhc
Confidence 5787777777666 77899999999999999 6677766 8899999999999999999999999999
Q ss_pred cCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q psy8160 151 EDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEK 230 (324)
Q Consensus 151 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 230 (324)
.+ |++ ..+++.+|.++.. .+++++|+..|+++++++|+++.+++.+|.++...|++++ +..|++++++
T Consensus 462 ~~--p~~--~~a~~~lg~~~~~-------~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~ 529 (681)
T 2pzi_A 462 RV--GWR--WRLVWYRAVAELL-------TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWST 529 (681)
T ss_dssp HH--CCC--HHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH
T ss_pred cC--cch--HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh
Confidence 99 888 5599999999977 4599999999999999999999999999999999999999 9999999999
Q ss_pred CCCCHHHHHHhHHHHhhcCCCHHHHHHHH-----------HHHHhhHHHHHHcCCCCcchH-HHHHHHhhh
Q psy8160 231 SEGNADTWCSIGNKDFSNNSNREDYHQAL-----------NKYRDLGDFLVINNIPTSNNN-RQCYNSYST 289 (324)
Q Consensus 231 ~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~~~A-~~~~~~al~ 289 (324)
+|+++.+|+++|.++...|+ +++|+..| .+|.++|.++...++..+ + ...+++|++
T Consensus 530 ~P~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~A~~ 597 (681)
T 2pzi_A 530 NDGVISAAFGLARARSAEGD-RVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSE--VTEEQIRDAAR 597 (681)
T ss_dssp CTTCHHHHHHHHHHHHHTTC-HHHHHHHHHTSCTTSTTHHHHHHHHHHHTC---------CCHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHcCC-HHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCC--CCHHHHHHHHH
Confidence 99999999999999999999 88888777 677777777766665444 3 444444443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=176.46 Aligned_cols=182 Identities=12% Similarity=-0.024 Sum_probs=164.8
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh---------cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCccc
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL---------IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFT 120 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al---------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 120 (324)
+..+++..| ...|++++|++.|++++ .+|.+..++..+|.++...|++++|+..|++++...|.+.
T Consensus 393 ~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-- 467 (681)
T 2pzi_A 393 DVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRW-- 467 (681)
T ss_dssp STTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCH--
T ss_pred CcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchH--
Confidence 334556555 77899999999999997 4599999999999999999999999999999999998886
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc
Q psy8160 121 KLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS 200 (324)
Q Consensus 121 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 200 (324)
.+++.+|.++...|++++|+..|+++++.+ |++ ..++..+|.++.. .|++++ +..|+++++.+|.+
T Consensus 468 --~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~--~~~~~~lg~~~~~-------~g~~~~-~~~~~~al~~~P~~ 533 (681)
T 2pzi_A 468 --RLVWYRAVAELLTGDYDSATKHFTEVLDTF--PGE--LAPKLALAATAEL-------AGNTDE-HKFYQTVWSTNDGV 533 (681)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTC--SHHHHHHHHHHHH-------HTCCCT-TCHHHHHHHHCTTC
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC--hHHHHHHHHHHHH-------cCChHH-HHHHHHHHHhCCch
Confidence 899999999999999999999999999999 988 4599999999977 458999 99999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCC
Q psy8160 201 GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNS 250 (324)
Q Consensus 201 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 250 (324)
+.+|+++|.++...|++++|+..|+++++++|+++.+|.++|.++...+.
T Consensus 534 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 534 ISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 99999999999999999999999999999999999999999999977554
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=4.5e-20 Score=154.97 Aligned_cols=198 Identities=12% Similarity=0.055 Sum_probs=157.8
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHh-cCCC------CchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcc--cHH
Q psy8160 52 EVHLRLGLMFKVNNEYDSALKHLTLCL-IDAS------PCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTF--TKL 122 (324)
Q Consensus 52 ~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~--~~~ 122 (324)
+.+...|.+|...|++++|+.+|.+++ +.+. ...++..+|.++...|++++|+.+|++++...+.... ...
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 117 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 345555778999999999999999999 6422 2456777999999999999999999999987654332 335
Q ss_pred HHHHHHHHHHHHh-hcHHHHHHHHHHHHhcCCCCCc----hhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhC
Q psy8160 123 EVRFHIAHLHEVQ-RKYKTAKDSYEQLLKEDDLPVH----LKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEAD 197 (324)
Q Consensus 123 ~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 197 (324)
.++.++|.+|... |++++|+.+|++++... |.. ..+.++..+|.++.. .|++++|+.+|+++++..
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~--~~~~~~~~~~~~~~~lg~~~~~-------~g~~~~A~~~~~~al~~~ 188 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWY--AQDQSVALSNKCFIKCADLKAL-------DGQYIEASDIYSKLIKSS 188 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH--HhCCChHHHHHHHHHHHHHHHH-------hCCHHHHHHHHHHHHHHH
Confidence 6899999999996 99999999999999887 432 114578899999977 559999999999999999
Q ss_pred CccHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHH-----HHHhHHHHh--hcCCCHHHHHHHH
Q psy8160 198 PKSGQ-------SLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADT-----WCSIGNKDF--SNNSNREDYHQAL 259 (324)
Q Consensus 198 ~~~~~-------~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~-----~~~lg~~~~--~~~~~~~~A~~~~ 259 (324)
|.++. ++..+|.++..+|++++|+..|++++.++|+.+.. +..++..+. ..++ +++|+..|
T Consensus 189 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~-~~~A~~~~ 263 (292)
T 1qqe_A 189 MGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQ-LSEHCKEF 263 (292)
T ss_dssp SSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTT-HHHHHHHH
T ss_pred hcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHH-HHHHHHHh
Confidence 87653 67899999999999999999999999999987664 445666664 5678 99999988
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-18 Score=154.21 Aligned_cols=276 Identities=10% Similarity=0.037 Sum_probs=166.0
Q ss_pred ccccchhhhH-hHHHH-----H-HHHHHHHHHHhccCCCcc------------------------------cchHHHHHH
Q psy8160 15 TSVRVPKLQQ-FGKTL-----N-IKAIKTFQQLLYVDPSYL------------------------------RANEVHLRL 57 (324)
Q Consensus 15 ~~~~~~~l~~-~~~~~-----~-~~A~~~~~~~l~~~p~~~------------------------------~~~~~~~~l 57 (324)
+|.....||. +.... . ++|+.+|+++++..+... ..+.+++.+
T Consensus 68 ~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~L 147 (452)
T 3e4b_A 68 SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQ 147 (452)
T ss_dssp ---CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHH
Confidence 6677777777 33322 2 788888888887543210 011234444
Q ss_pred HHHHHHhc----cHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcc---cHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Q psy8160 58 GLMFKVNN----EYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNN---EYDSALKHLTLCLIDASPCTFTKLEVRFHIA 129 (324)
Q Consensus 58 g~~~~~~~----~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la 129 (324)
|.+|...+ +.+.+..+++.+. .+|. +...+|.++...| ++++|++.|+++....+... ..++.+|
T Consensus 148 g~~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a----~~~~~Lg 220 (452)
T 3e4b_A 148 VLLYRTQGTYDQHLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTA----QRVDSVA 220 (452)
T ss_dssp HHHHHHHTCGGGGHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCH----HHHHHHH
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHH----HHHHHHH
Confidence 44444444 2333333444444 3333 6667777777777 77777777777777666553 4457777
Q ss_pred HHHHHh----hcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHH
Q psy8160 130 HLHEVQ----RKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLY 205 (324)
Q Consensus 130 ~~~~~~----~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 205 (324)
.+|... +++++|+..|+++. |++ +.+++.+|.+|+.... .+++++|+.+|+++.+. .++.+++
T Consensus 221 ~~y~~g~~~~~d~~~A~~~~~~aa-----~g~--~~a~~~Lg~~~~~~~~----~~d~~~A~~~~~~Aa~~--g~~~A~~ 287 (452)
T 3e4b_A 221 RVLGDATLGTPDEKTAQALLEKIA-----PGY--PASWVSLAQLLYDFPE----LGDVEQMMKYLDNGRAA--DQPRAEL 287 (452)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHG-----GGS--THHHHHHHHHHHHSGG----GCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHc-----CCC--HHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHHC--CCHHHHH
Confidence 777554 57777777777776 223 3377777777442111 33777777777777654 3677777
Q ss_pred HHHHHHHHcC-----CHHHHHHHHHHHHccCCCCHHHHHHhHHHHhh----cCCCHHHHHHHH---------HHHHhhHH
Q psy8160 206 LLGRCFAAVG-----KVHDAFLAYRNSVEKSEGNADTWCSIGNKDFS----NNSNREDYHQAL---------NKYRDLGD 267 (324)
Q Consensus 206 ~lg~~~~~~~-----~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~~A~~~~---------~~~~~lg~ 267 (324)
.||.+|. .| ++++|+.+|+++. |.++.+++++|.+|.. ..+ +++|+.+| .+.++||.
T Consensus 288 ~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d-~~~A~~~~~~Aa~~g~~~A~~~Lg~ 362 (452)
T 3e4b_A 288 LLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVY-PQKALDHLLTAARNGQNSADFAIAQ 362 (452)
T ss_dssp HHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCC-HHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcC-HHHHHHHHHHHHhhChHHHHHHHHH
Confidence 7777776 44 7777777777776 7777777777777766 336 77777777 66777777
Q ss_pred HHHH----cCCCCcchHHHHHHHhhhcCCChhhhhhchhhhc-cCChhhHHHHHHHH
Q psy8160 268 FLVI----NNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSN-NSNREDYHQALNKY 319 (324)
Q Consensus 268 ~~~~----~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-~~~~~~~~~a~~~~ 319 (324)
+|.. ..++.+ |+..|++|.+..+. .....+..+. ....++..+|....
T Consensus 363 ~y~~G~g~~~d~~~--A~~~~~~A~~~g~~--~a~~~l~~l~~~~~~~~~~~a~~~~ 415 (452)
T 3e4b_A 363 LFSQGKGTKPDPLN--AYVFSQLAKAQDTP--EANDLATQLEAPLTPAQRAEGQRLV 415 (452)
T ss_dssp HHHSCTTBCCCHHH--HHHHHHHHHTTCCH--HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHhCCCCCCCHHH--HHHHHHHHHHCCCH--HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 7764 235666 77777777765443 3333333332 23344555554443
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.85 E-value=5.9e-19 Score=149.31 Aligned_cols=215 Identities=10% Similarity=-0.026 Sum_probs=184.2
Q ss_pred HHHHHhhhhccccccchhhhHhHHHH-------H---------HHHHHHHHHHhc-cCCCcccchHHHHHHHHHHHHhcc
Q psy8160 4 VIQKNLVEGIVTSVRVPKLQQFGKTL-------N---------IKAIKTFQQLLY-VDPSYLRANEVHLRLGLMFKVNNE 66 (324)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~~~~~-------~---------~~A~~~~~~~l~-~~p~~~~~~~~~~~lg~~~~~~~~ 66 (324)
..++.+...+.+++++..++.+.... + ++|+..|+++++ ++|+ ...+|+.+|.++...|+
T Consensus 38 ~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~---~~~~~~~~~~~~~~~~~ 114 (308)
T 2ond_A 38 AYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK---NMLLYFAYADYEESRMK 114 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT---CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHhcCC
Confidence 45666777888899998888765421 1 789999999999 7886 45689999999999999
Q ss_pred HHHHHHHHHHHh-cCCCCch-hhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH-HhhcHHHHHH
Q psy8160 67 YDSALKHLTLCL-IDASPCT-FTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHE-VQRKYKTAKD 143 (324)
Q Consensus 67 ~~~A~~~~~~al-~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~ 143 (324)
+++|...|++++ .+|.+.. ++..+|.++...|++++|+..|++++...|... .++...+.+.. ..|++++|+.
T Consensus 115 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~----~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 115 YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRH----HVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp HHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCT----HHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999 9999886 899999999999999999999999998877654 66666666543 3699999999
Q ss_pred HHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhh---CC-ccHHHHHHHHHHHHHcCCHHH
Q psy8160 144 SYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEA---DP-KSGQSLYLLGRCFAAVGKVHD 219 (324)
Q Consensus 144 ~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~~-~~~~~~~~lg~~~~~~~~~~~ 219 (324)
+|++++..+ |++ +.++..++.++.. .|++++|+..|++++.. .| .....|..++......|++++
T Consensus 191 ~~~~al~~~--p~~--~~~~~~~~~~~~~-------~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~ 259 (308)
T 2ond_A 191 IFELGLKKY--GDI--PEYVLAYIDYLSH-------LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLAS 259 (308)
T ss_dssp HHHHHHHHH--TTC--HHHHHHHHHHHHT-------TCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHhC--CCc--HHHHHHHHHHHHH-------CCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 999999999 887 5599999988865 45999999999999995 55 367899999999999999999
Q ss_pred HHHHHHHHHccCCCCHH
Q psy8160 220 AFLAYRNSVEKSEGNAD 236 (324)
Q Consensus 220 A~~~~~~al~~~p~~~~ 236 (324)
|...++++++..|++++
T Consensus 260 a~~~~~~a~~~~p~~~~ 276 (308)
T 2ond_A 260 ILKVEKRRFTAFREEYE 276 (308)
T ss_dssp HHHHHHHHHHHTTTTTS
T ss_pred HHHHHHHHHHHcccccc
Confidence 99999999999998653
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=8.8e-19 Score=152.07 Aligned_cols=253 Identities=9% Similarity=-0.079 Sum_probs=201.5
Q ss_pred HHHHHHHHHHhccCCCccc--chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchh------hHHHHHHHHhcccHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLR--ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTF------TKLEGLMFKVNNEYD 101 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~------~~~la~~~~~~~~~~ 101 (324)
++|+..+++++...|.... ...++..+|.++...|++++|...+++++ ..|..... ...+|.++...|+++
T Consensus 31 ~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~ 110 (373)
T 1hz4_A 31 DEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQ 110 (373)
T ss_dssp HHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHH
Confidence 9999999999998875322 22367889999999999999999999999 65443322 456899999999999
Q ss_pred HHHHHHHHHHHhcCCCc----ccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCch-hhHHHHHHHHHHHhhhhh
Q psy8160 102 SALKHLTLCLIDASPCT----FTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHL-KADICRQLGWMYHCIDTL 176 (324)
Q Consensus 102 ~A~~~~~~~l~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 176 (324)
+|+..+++++...+... .....++..+|.++...|++++|...+++++......... ...++..+|.++..
T Consensus 111 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~---- 186 (373)
T 1hz4_A 111 TAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLA---- 186 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHH----
Confidence 99999999987643221 2244678889999999999999999999999876221111 24578888888866
Q ss_pred cccchhHHHHHHHHHHHhhhCCc--cHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHccCCCC----HHHHHHhHHHH
Q psy8160 177 GEKSHRETLAIHCLQKSIEADPK--SGQSLY-----LLGRCFAAVGKVHDAFLAYRNSVEKSEGN----ADTWCSIGNKD 245 (324)
Q Consensus 177 ~~~~~~~~~A~~~~~~al~~~~~--~~~~~~-----~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~ 245 (324)
.|++++|+.++++++...+. .+..+. .++.++...|++++|...+++++...|.. ...+..+|.++
T Consensus 187 ---~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~ 263 (373)
T 1hz4_A 187 ---RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 263 (373)
T ss_dssp ---HTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred ---cCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHH
Confidence 55999999999999876322 221222 34566889999999999999999887754 33678899999
Q ss_pred hhcCCCHHHHHHHH-----------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCC
Q psy8160 246 FSNNSNREDYHQAL-----------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIAS 293 (324)
Q Consensus 246 ~~~~~~~~~A~~~~-----------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~ 293 (324)
...|+ +++|+..+ .++..+|.++...|++++ |...+++++.+.+.
T Consensus 264 ~~~g~-~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~--A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 264 ILLGE-FEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSD--AQRVLLDALKLANR 325 (373)
T ss_dssp HHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH--HHHHHHHHHHHHHH
T ss_pred HHcCC-HHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHH--HHHHHHHHHHHhcc
Confidence 99999 99999888 367788999999999999 99999999988764
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.2e-20 Score=157.40 Aligned_cols=231 Identities=12% Similarity=0.033 Sum_probs=178.6
Q ss_pred CCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcC----CCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC-
Q psy8160 80 DASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDAS----PCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDL- 154 (324)
Q Consensus 80 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~----~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~- 154 (324)
+|.....+..+|.++...|++++|+..+++++.... +.......++..+|.++...|++++|+..|++++.....
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 466667778899999999999999999999987521 122344578999999999999999999999999976200
Q ss_pred ---CCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhC--------CccHHHHHHHHHHHHHcCCHHHHHHH
Q psy8160 155 ---PVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEAD--------PKSGQSLYLLGRCFAAVGKVHDAFLA 223 (324)
Q Consensus 155 ---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~lg~~~~~~~~~~~A~~~ 223 (324)
.......++..+|.++.. .+++++|+.+++++++.. |....++..+|.++...|++++|+.+
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~-------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 175 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGK-------RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYY 175 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHT-------TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHH-------cCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 122236689999999976 559999999999999874 66678899999999999999999999
Q ss_pred HHHHHcc--------CCCCHHHHHHhHHHHhhcCCCHHHHHHHH--------------------------HHHHhhHHHH
Q psy8160 224 YRNSVEK--------SEGNADTWCSIGNKDFSNNSNREDYHQAL--------------------------NKYRDLGDFL 269 (324)
Q Consensus 224 ~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~~A~~~~--------------------------~~~~~lg~~~ 269 (324)
|++++.. .|..+.++..+|.++...|+ +++|+..| ..+..++..+
T Consensus 176 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (311)
T 3nf1_A 176 YQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGK-FKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQ 254 (311)
T ss_dssp HHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCch
Confidence 9999998 67778899999999999999 99999998 2234455566
Q ss_pred HHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHhh
Q psy8160 270 VINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYRD 321 (324)
Q Consensus 270 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 321 (324)
...+.+.+ |+..+.++....|..+.+...++.+. ...|++++|+..|+.
T Consensus 255 ~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~ 303 (311)
T 3nf1_A 255 KDGTSFGE--YGGWYKACKVDSPTVTTTLKNLGALY-RRQGKFEAAETLEEA 303 (311)
T ss_dssp ---CCSCC--CC---------CHHHHHHHHHHHHHH-HHHTCHHHHHHHHHH
T ss_pred hhHHHHHH--HHHHHhhcCCCCchHHHHHHHHHHHH-HHCCCHHHHHHHHHH
Confidence 67788999 99999999999999999988888764 467999999998875
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-18 Score=145.75 Aligned_cols=216 Identities=7% Similarity=-0.044 Sum_probs=192.4
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhc--cHHHHHHHHHHHh-cCCCCchhhHHHHHHH----Hhc---ccH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNN--EYDSALKHLTLCL-IDASPCTFTKLEGLMF----KVN---NEY 100 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~--~~~~A~~~~~~al-~~~~~~~~~~~la~~~----~~~---~~~ 100 (324)
++|+..+.++|.++|++ ..++...|.+....+ ++++++..+..++ .+|.+..++...+.++ ... +++
T Consensus 50 ~~aL~~t~~~L~~nP~~---~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 50 ERALHITELGINELASH---YTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp HHHHHHHHHHHHHCTTC---HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred HHHHHHHHHHHHHCcHH---HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 89999999999999974 568999999999999 9999999999999 9999999999998888 666 789
Q ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHH--HHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcc
Q psy8160 101 DSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYK--TAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGE 178 (324)
Q Consensus 101 ~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~--~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 178 (324)
++++.++++++..+|.+. .+|...+.+....|.++ ++++.+.+++..+ |.+.. +|...+.+........
T Consensus 127 ~~EL~~~~~~l~~~pkny----~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~s--AW~~R~~ll~~l~~~~- 197 (306)
T 3dra_A 127 YREFDILEAMLSSDPKNH----HVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNS--AWSHRFFLLFSKKHLA- 197 (306)
T ss_dssp HHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHH--HHHHHHHHHHSSGGGC-
T ss_pred HHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHH--HHHHHHHHHHhccccc-
Confidence 999999999999999987 89999999999999998 9999999999999 88855 9999999986632100
Q ss_pred cchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHH-HHHHHHHHHccC---CCCHHHHHHhHHHHhhcCCCHHH
Q psy8160 179 KSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHD-AFLAYRNSVEKS---EGNADTWCSIGNKDFSNNSNRED 254 (324)
Q Consensus 179 ~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~-A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~~ 254 (324)
....+++++.++.+++..+|.+..+|+.++.++...|+..+ ...++.+++.++ |.++.++..++.++.+.|+ .++
T Consensus 198 ~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~-~~~ 276 (306)
T 3dra_A 198 TDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKK-YNE 276 (306)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTC-HHH
T ss_pred hhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCC-HHH
Confidence 01138999999999999999999999999999999998655 556788888876 8899999999999999999 999
Q ss_pred HHHHH
Q psy8160 255 YHQAL 259 (324)
Q Consensus 255 A~~~~ 259 (324)
|+++|
T Consensus 277 A~~~~ 281 (306)
T 3dra_A 277 SRTVY 281 (306)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99998
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-19 Score=140.50 Aligned_cols=171 Identities=14% Similarity=0.160 Sum_probs=107.0
Q ss_pred hhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHH
Q psy8160 86 FTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQ 165 (324)
Q Consensus 86 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 165 (324)
.+..+|.++...|++++|+..+++++...|... .++..+|.++...|++++|+..+++++... |.+ ..++..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~--~~~~~~ 81 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDV----DVALHLGIAYVKTGAVDRGTELLERSLADA--PDN--VKVATV 81 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC--HHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCC--HHHHHH
Confidence 344456666666666666666666665555443 556666666666666666666666666665 554 335666
Q ss_pred HHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHH
Q psy8160 166 LGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKD 245 (324)
Q Consensus 166 l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 245 (324)
+|.++.. .+++++|+.+++++++..|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++
T Consensus 82 ~a~~~~~-------~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 154 (186)
T 3as5_A 82 LGLTYVQ-------VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSY 154 (186)
T ss_dssp HHHHHHH-------HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHH-------hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 6666644 336666666666666666666666666666666666666666666666666666665555555555
Q ss_pred hhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhh
Q psy8160 246 FSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHI 297 (324)
Q Consensus 246 ~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 297 (324)
...|+ +++ |+..|+++++.+|+++..
T Consensus 155 ~~~~~------------------------~~~--A~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 155 EQMGR------------------------HEE--ALPHFKKANELDEGASVE 180 (186)
T ss_dssp HHTTC------------------------HHH--HHHHHHHHHHHHHCCCGG
T ss_pred HHcCC------------------------HHH--HHHHHHHHHHcCCCchhh
Confidence 55555 666 888888888888876543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.5e-19 Score=156.01 Aligned_cols=216 Identities=13% Similarity=0.092 Sum_probs=179.4
Q ss_pred HHHHHHHHHHhccCC---CcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCC-------chhhHHHHHHHHhccc
Q psy8160 31 IKAIKTFQQLLYVDP---SYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASP-------CTFTKLEGLMFKVNNE 99 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p---~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~-------~~~~~~la~~~~~~~~ 99 (324)
++|++.|.+++++.+ +.+....+++.+|.+|...|+++.|+.++++++ ..+.. ..++..+|.++...|+
T Consensus 118 ~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~ 197 (378)
T 3q15_A 118 VEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKH 197 (378)
T ss_dssp HHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCC
Confidence 999999999998754 334456789999999999999999999999999 54332 3345668999999999
Q ss_pred HHHHHHHHHHHHHhcCC--CcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHh-----cCCCCCchhhHHHHHHHHHHHh
Q psy8160 100 YDSALKHLTLCLIDASP--CTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLK-----EDDLPVHLKADICRQLGWMYHC 172 (324)
Q Consensus 100 ~~~A~~~~~~~l~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-----~~~~~~~~~~~~~~~l~~~~~~ 172 (324)
+++|+++|++++...+. .......++.++|.++...|++++|+.+|++++. .+ |.. +.++..+|.++..
T Consensus 198 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~--~~~--~~~~~~la~~~~~ 273 (378)
T 3q15_A 198 YDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP--DLL--PKVLFGLSWTLCK 273 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG--GGH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC--hhH--HHHHHHHHHHHHH
Confidence 99999999999876432 2224557899999999999999999999999998 44 544 6699999999977
Q ss_pred hhhhcccchhHHHHHHHHHHHhhhC-----CccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHccCCCCHHHHHHhHHH
Q psy8160 173 IDTLGEKSHRETLAIHCLQKSIEAD-----PKSGQSLYLLGRCFAAVGK---VHDAFLAYRNSVEKSEGNADTWCSIGNK 244 (324)
Q Consensus 173 ~~~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~lg~~ 244 (324)
.|++++|+.+++++++.. |.....+..++.++...++ +.+|+..+++. ...|....++..+|.+
T Consensus 274 -------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 274 -------AGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAV 345 (378)
T ss_dssp -------TTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred -------CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHH
Confidence 559999999999999874 3344567788889999998 88899988873 4445556788899999
Q ss_pred HhhcCCCHHHHHHHH
Q psy8160 245 DFSNNSNREDYHQAL 259 (324)
Q Consensus 245 ~~~~~~~~~~A~~~~ 259 (324)
|...|+ +++|+.+|
T Consensus 346 y~~~g~-~~~A~~~~ 359 (378)
T 3q15_A 346 FESSCH-FEQAAAFY 359 (378)
T ss_dssp HHHTTC-HHHHHHHH
T ss_pred HHHCCC-HHHHHHHH
Confidence 999999 99999987
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-18 Score=140.86 Aligned_cols=173 Identities=9% Similarity=-0.016 Sum_probs=109.8
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCc---hhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHH
Q psy8160 51 NEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPC---TFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRF 126 (324)
Q Consensus 51 ~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 126 (324)
++.++.+|..+...|++++|+..|++++ ..|.+. .++..+|.++...|++++|+..|++++...|.+.. ...+++
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~-~~~a~~ 82 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN-IDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT-HHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc-HHHHHH
Confidence 4567778888888888888888888888 777654 45666788888888888888888888877776542 234677
Q ss_pred HHHHHHHH------------------hhcHHHHHHHHHHHHhcCCCCCchhh-HHH--------------HHHHHHHHhh
Q psy8160 127 HIAHLHEV------------------QRKYKTAKDSYEQLLKEDDLPVHLKA-DIC--------------RQLGWMYHCI 173 (324)
Q Consensus 127 ~la~~~~~------------------~~~~~~A~~~~~~al~~~~~~~~~~~-~~~--------------~~l~~~~~~~ 173 (324)
.+|.++.. .|++++|+..|++++... |++..+ .+. ..+|.++..
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~- 159 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTE- 159 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 77777765 579999999999999999 877441 111 223333322
Q ss_pred hhhcccchhHHHHHHHHHHHhhhCCccH---HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q psy8160 174 DTLGEKSHRETLAIHCLQKSIEADPKSG---QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEG 233 (324)
Q Consensus 174 ~~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 233 (324)
.+++++|+..|+++++..|+++ ++++.+|.++..+|++++|+..++++....|+
T Consensus 160 ------~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 160 ------RGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp ------HTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred ------cCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 2244445555555554444443 34444555555555555555555444444443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-19 Score=150.63 Aligned_cols=202 Identities=18% Similarity=0.203 Sum_probs=151.9
Q ss_pred cchHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q psy8160 49 RANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHI 128 (324)
Q Consensus 49 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~l 128 (324)
....++..+|.++...|++++|+.+|++++ +..++.. .........++..+
T Consensus 41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--------------------------~~~~~~~---~~~~~~~~~~~~~l 91 (283)
T 3edt_B 41 DVATMLNILALVYRDQNKYKEAAHLLNDAL--------------------------AIREKTL---GKDHPAVAATLNNL 91 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------------------------HHHHHHT---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHH--------------------------HHHHHHc---CCcchHHHHHHHHH
Confidence 345566667777777777777766666443 1111111 11122345788999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcC------CCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhh------
Q psy8160 129 AHLHEVQRKYKTAKDSYEQLLKED------DLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEA------ 196 (324)
Q Consensus 129 a~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------ 196 (324)
|.++...|++++|+.+|++++... ..|.. ..++..+|.++.. .+++++|+.+++++++.
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--~~~~~~la~~~~~-------~g~~~~A~~~~~~al~~~~~~~~ 162 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDV--AKQLNNLALLCQN-------QGKAEEVEYYYRRALEIYATRLG 162 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHHT-------TTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHH--HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999998772 11332 6699999999977 55999999999999998
Q ss_pred --CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc---------CCCCHHHHHHhHHHHhhcCCCHHHH------HHHH
Q psy8160 197 --DPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEK---------SEGNADTWCSIGNKDFSNNSNREDY------HQAL 259 (324)
Q Consensus 197 --~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---------~p~~~~~~~~lg~~~~~~~~~~~~A------~~~~ 259 (324)
.|....++..+|.++...|++++|+..+++++.+ .+.....|..++..+...+. ...+ ...+
T Consensus 163 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 241 (283)
T 3edt_B 163 PDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDK-RRDSAPYGEYGSWY 241 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCC-CCC-----------
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHH
Confidence 7777899999999999999999999999999986 55666778888877776554 3333 2222
Q ss_pred -----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcC
Q psy8160 260 -----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSI 291 (324)
Q Consensus 260 -----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~ 291 (324)
.++..+|.+|...|++++ |+.+|+++++..
T Consensus 242 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~--A~~~~~~al~~~ 282 (283)
T 3edt_B 242 KACKVDSPTVNTTLRSLGALYRRQGKLEA--AHTLEDCASRNR 282 (283)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHTTC
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHhh
Confidence 688999999999999999 999999998753
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.8e-18 Score=137.61 Aligned_cols=183 Identities=9% Similarity=0.059 Sum_probs=143.9
Q ss_pred chhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchh-hHH
Q psy8160 84 CTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK-ADI 162 (324)
Q Consensus 84 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~ 162 (324)
......+|..+...|++++|+..|++++...|.+.. ...+++.+|.++...|++++|+..|++++..+ |++.. ..+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a 80 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPY-SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV 80 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTT-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence 345667899999999999999999999998776542 34689999999999999999999999999999 77644 358
Q ss_pred HHHHHHHHHhhh-----------hhcccchhHHHHHHHHHHHhhhCCccHHHH-----------------HHHHHHHHHc
Q psy8160 163 CRQLGWMYHCID-----------TLGEKSHRETLAIHCLQKSIEADPKSGQSL-----------------YLLGRCFAAV 214 (324)
Q Consensus 163 ~~~l~~~~~~~~-----------~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-----------------~~lg~~~~~~ 214 (324)
++.+|.++.... ......+++++|+..|+++++.+|+++.++ +.+|.++...
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~ 160 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTER 160 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 899998886421 000124589999999999999999987554 5788899999
Q ss_pred CCHHHHHHHHHHHHccCCCCH---HHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcC
Q psy8160 215 GKVHDAFLAYRNSVEKSEGNA---DTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSI 291 (324)
Q Consensus 215 ~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~ 291 (324)
|++++|+..|+++++..|+++ ++++.+|.++...|+ +++ |++.++++....
T Consensus 161 ~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~------------------------~~~--A~~~~~~l~~~~ 214 (225)
T 2yhc_A 161 GAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQM------------------------NAQ--AEKVAKIIAANS 214 (225)
T ss_dssp TCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTC------------------------HHH--HHHHHHHHHHCC
T ss_pred CcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCC------------------------cHH--HHHHHHHHHhhC
Confidence 999999999999999999876 456666666666666 555 666666666666
Q ss_pred CChh
Q psy8160 292 ASCK 295 (324)
Q Consensus 292 p~~~ 295 (324)
|++.
T Consensus 215 ~~~~ 218 (225)
T 2yhc_A 215 SNTL 218 (225)
T ss_dssp SCCC
T ss_pred CCch
Confidence 6543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.3e-19 Score=147.90 Aligned_cols=203 Identities=14% Similarity=0.021 Sum_probs=135.0
Q ss_pred cchhhhHhHHHHH--HHHHHHHHHHhccC-----CCcccchHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHH
Q psy8160 18 RVPKLQQFGKTLN--IKAIKTFQQLLYVD-----PSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLE 90 (324)
Q Consensus 18 ~~~~l~~~~~~~~--~~A~~~~~~~l~~~-----p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~l 90 (324)
.+..+|.+....+ ++|+..|.+++++. ++.+....++..+|.++...|++++|+.+|++++
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al------------ 112 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL------------ 112 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHH------------
Confidence 3344444444333 77777777777663 3334455567777777777777777777776444
Q ss_pred HHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc------CCCCCchhhHHHH
Q psy8160 91 GLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKE------DDLPVHLKADICR 164 (324)
Q Consensus 91 a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~~~~ 164 (324)
..+++.. .+.......++..+|.++...|++++|+.+|++++.. ...|.. ..++.
T Consensus 113 --------------~~~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--~~~~~ 173 (283)
T 3edt_B 113 --------------EIREKVL---GKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNV--AKTKN 173 (283)
T ss_dssp --------------HHHHHHH---CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHH--HHHHH
T ss_pred --------------HHHHHHc---CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH--HHHHH
Confidence 1111111 1112233578899999999999999999999999987 111333 56899
Q ss_pred HHHHHHHhhhhhcccchhHHHHHHHHHHHhhh---------CCccHHHHHHHHHHHHHcCC------HHHHHHHHHHHHc
Q psy8160 165 QLGWMYHCIDTLGEKSHRETLAIHCLQKSIEA---------DPKSGQSLYLLGRCFAAVGK------VHDAFLAYRNSVE 229 (324)
Q Consensus 165 ~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---------~~~~~~~~~~lg~~~~~~~~------~~~A~~~~~~al~ 229 (324)
.+|.++.. .|++++|+.+++++++. .+.....|..++..+...+. +..+...++....
T Consensus 174 ~la~~~~~-------~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (283)
T 3edt_B 174 NLASCYLK-------QGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV 246 (283)
T ss_dssp HHHHHHHH-------HTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC
T ss_pred HHHHHHHH-------cCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC
Confidence 99999977 45999999999999987 34445677777777766544 4455555555555
Q ss_pred cCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 230 KSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 230 ~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
..|..+.++..+|.+|...|+ +++|+..|
T Consensus 247 ~~~~~~~~~~~la~~~~~~g~-~~~A~~~~ 275 (283)
T 3edt_B 247 DSPTVNTTLRSLGALYRRQGK-LEAAHTLE 275 (283)
T ss_dssp CCHHHHHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence 566777889999999999999 99998876
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.81 E-value=5.2e-18 Score=154.23 Aligned_cols=222 Identities=6% Similarity=0.020 Sum_probs=181.8
Q ss_pred HHHHHHHHHhccCCCcccchHHHHHHHHHHHH-------hccHH-------HHHHHHHHHh--cCCCCchhhHHHHHHHH
Q psy8160 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKV-------NNEYD-------SALKHLTLCL--IDASPCTFTKLEGLMFK 95 (324)
Q Consensus 32 ~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~-------~~~~~-------~A~~~~~~al--~~~~~~~~~~~la~~~~ 95 (324)
.++..|++++..+|. .+++|+.+|..+.. .|+++ +|...|++++ ..|++..++..++.++.
T Consensus 256 ~a~~~y~~al~~~p~---~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~ 332 (530)
T 2ooe_A 256 RVMFAYEQCLLVLGH---HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 332 (530)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 678899999999986 45689999999886 68877 9999999999 47999999999999999
Q ss_pred hcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhh
Q psy8160 96 VNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDT 175 (324)
Q Consensus 96 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~ 175 (324)
..|++++|...|++++...|... ..+|..+|.++...|++++|+..|++++... |.... .+...+++.+. .
T Consensus 333 ~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--~~~~~--~~~~~a~~~~~--~ 403 (530)
T 2ooe_A 333 SRMKYEKVHSIYNRLLAIEDIDP---TLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHH--VYVTAALMEYY--C 403 (530)
T ss_dssp HTTCHHHHHHHHHHHHHSSSSCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--TCCTH--HHHHHHHHHHH--H
T ss_pred hcCCHHHHHHHHHHHhCccccCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--CCchH--HHHHHHHHHHH--H
Confidence 99999999999999998766542 2589999999999999999999999999887 65533 55555555322 1
Q ss_pred hcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH----HHHHhHHHHhhcCCC
Q psy8160 176 LGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNAD----TWCSIGNKDFSNNSN 251 (324)
Q Consensus 176 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~lg~~~~~~~~~ 251 (324)
.|++++|...|+++++.+|+++.+|..+|..+...|++++|...|++++...|.++. +|...+......|+
T Consensus 404 ----~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~- 478 (530)
T 2ooe_A 404 ----SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD- 478 (530)
T ss_dssp ----TCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSC-
T ss_pred ----cCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC-
Confidence 348999999999999999999999999999999999999999999999998876654 66665555555555
Q ss_pred HHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChh
Q psy8160 252 REDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCK 295 (324)
Q Consensus 252 ~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (324)
.+. +..++.++++..|+++
T Consensus 479 -----------------------~~~--~~~~~~r~~~~~p~~~ 497 (530)
T 2ooe_A 479 -----------------------LAS--ILKVEKRRFTAFREEY 497 (530)
T ss_dssp -----------------------HHH--HHHHHHHHHHHTHHHH
T ss_pred -----------------------HHH--HHHHHHHHHHHCchhc
Confidence 455 6666666666666533
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-17 Score=144.69 Aligned_cols=260 Identities=13% Similarity=-0.004 Sum_probs=200.3
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCch-----hhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcc--cHH
Q psy8160 51 NEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCT-----FTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTF--TKL 122 (324)
Q Consensus 51 ~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~-----~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~--~~~ 122 (324)
.+++..+|.++...|++++|+..+++++ ..|.... +...+|.++...|++++|+..+++++...+.... ...
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 4577888999999999999999999999 6665543 4556899999999999999999999876544332 334
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC---CC-chhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCC
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDL---PV-HLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADP 198 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 198 (324)
.++..+|.++...|++++|+..+++++..... +. .....++..+|.++.. .|++++|+.++++++...|
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-------~g~~~~A~~~~~~al~~~~ 166 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA-------WARLDEAEASARSGIEVLS 166 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHHhh
Confidence 56788999999999999999999999976411 11 1225577889999876 5599999999999998876
Q ss_pred c-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC--CCHHHHH-----HhHHHHhhcCCCHHHHHHHH-------
Q psy8160 199 K-----SGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSE--GNADTWC-----SIGNKDFSNNSNREDYHQAL------- 259 (324)
Q Consensus 199 ~-----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~-----~lg~~~~~~~~~~~~A~~~~------- 259 (324)
. ...++..+|.++...|++++|...+++++.+.+ ..+..|. .++.++...|+ +++|...+
T Consensus 167 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~a~~~~ 245 (373)
T 1hz4_A 167 SYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGD-KAAAANWLRHTAKPE 245 (373)
T ss_dssp TSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHSCCCC
T ss_pred ccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCC-HHHHHHHHHhCCCCC
Confidence 4 246788999999999999999999999987633 2322232 34456889999 99999988
Q ss_pred --------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChh------hhhhchhhhccCChhhHHHHHHHHhh
Q psy8160 260 --------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCK------HINNNKDFSNNSNREDYHQALNKYRD 321 (324)
Q Consensus 260 --------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~~a~~~~~~ 321 (324)
..+..+|.++...|++++ |+..+++++...+... .+...++.+ ....|++.+|...++.
T Consensus 246 ~~~~~~~~~~~~~la~~~~~~g~~~~--A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~l~~ 318 (373)
T 1hz4_A 246 FANNHFLQGQWRNIARAQILLGEFEP--AEIVLEELNENARSLRLMSDLNRNLLLLNQL-YWQAGRKSDAQRVLLD 318 (373)
T ss_dssp CTTCGGGHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHHTCHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHHHHhCcchhhHHHHHHHHHHH-HHHhCCHHHHHHHHHH
Confidence 256789999999999999 9999999988755422 133333322 2345677777766654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.8e-18 Score=126.20 Aligned_cols=113 Identities=17% Similarity=0.122 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH
Q psy8160 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG 201 (324)
Q Consensus 122 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 201 (324)
++.+..+|..++..|++++|+..|++++..+ |.+ +.++..+|.++.. .|++++|+..++++++++|.++
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~~~~-------~~~~~~A~~~~~~al~~~p~~~ 81 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PEN--AILYSNRAACLTK-------LMEFQRALDDCDTCIRLDSKFI 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC--HHHHHHHhhHHHh-------hccHHHHHHHHHHHHHhhhhhh
Confidence 4778899999999999999999999999999 888 5599999999977 5599999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHH
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKD 245 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 245 (324)
.+|+.+|.++..+|++++|+..|+++++++|++++++..++.|+
T Consensus 82 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 82 KGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999998874
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-18 Score=135.12 Aligned_cols=160 Identities=11% Similarity=0.025 Sum_probs=103.1
Q ss_pred chhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHH
Q psy8160 84 CTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADIC 163 (324)
Q Consensus 84 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 163 (324)
......+|..+...|++++|+..|++++...|.+. .+++.+|.++...|++++|+..|++++... | +. ...
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~----~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p-~~--~~~ 76 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRG----DVKLAKADCLLETKQFELAQELLATIPLEY--Q-DN--SYK 76 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSH----HHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--C-CH--HHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--C-Ch--HHH
Confidence 33344444455555555555555555555555544 667777777777777777777777777766 5 32 233
Q ss_pred HHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC--HHHHHHh
Q psy8160 164 RQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN--ADTWCSI 241 (324)
Q Consensus 164 ~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l 241 (324)
...+.+.... .....+|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+. +.++..+
T Consensus 77 ~~~~~~~~~~------~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l 150 (176)
T 2r5s_A 77 SLIAKLELHQ------QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTF 150 (176)
T ss_dssp HHHHHHHHHH------HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHH
T ss_pred HHHHHHHHHh------hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHH
Confidence 3333332210 0122346788888888888888888888888888888888888888888888765 4577777
Q ss_pred HHHHhhcCCCHHHHHHHH
Q psy8160 242 GNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 242 g~~~~~~~~~~~~A~~~~ 259 (324)
|.++...|+ .++|+..|
T Consensus 151 ~~~~~~~g~-~~~A~~~y 167 (176)
T 2r5s_A 151 MDILSALGQ-GNAIASKY 167 (176)
T ss_dssp HHHHHHHCS-SCHHHHHH
T ss_pred HHHHHHhCC-CCcHHHHH
Confidence 777777777 55555554
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.1e-18 Score=133.58 Aligned_cols=163 Identities=16% Similarity=0.113 Sum_probs=141.6
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Q psy8160 51 NEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIA 129 (324)
Q Consensus 51 ~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la 129 (324)
.+.++.+|..+...|++++|+..|++++ .+|++..++..+|.++...|++++|+..+++++...| +. .....++
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~----~~~~~~~ 80 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DN----SYKSLIA 80 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CH----HHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-Ch----HHHHHHH
Confidence 4568999999999999999999999999 9999999999999999999999999999999998887 43 3344444
Q ss_pred HHHH-HhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc--HHHHHH
Q psy8160 130 HLHE-VQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS--GQSLYL 206 (324)
Q Consensus 130 ~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~ 206 (324)
.+.. ..++...|+..+++++..+ |++ ..+++.+|.++.. .|++++|+..|+++++.+|.. +.++..
T Consensus 81 ~~~~~~~~~~~~a~~~~~~al~~~--P~~--~~~~~~la~~~~~-------~g~~~~A~~~~~~~l~~~p~~~~~~a~~~ 149 (176)
T 2r5s_A 81 KLELHQQAAESPELKRLEQELAAN--PDN--FELACELAVQYNQ-------VGRDEEALELLWNILKVNLGAQDGEVKKT 149 (176)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHS--TTC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHTTCTTTTTTHHHHH
T ss_pred HHHHHhhcccchHHHHHHHHHHhC--CCC--HHHHHHHHHHHHH-------cccHHHHHHHHHHHHHhCcccChHHHHHH
Confidence 4432 3344556899999999999 988 4599999999977 559999999999999999875 569999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHc
Q psy8160 207 LGRCFAAVGKVHDAFLAYRNSVE 229 (324)
Q Consensus 207 lg~~~~~~~~~~~A~~~~~~al~ 229 (324)
+|.++...|+.++|+..|++++.
T Consensus 150 l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 150 FMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcHHHHHHHHHH
Confidence 99999999999999999999875
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=5.5e-17 Score=137.01 Aligned_cols=233 Identities=12% Similarity=0.086 Sum_probs=190.6
Q ss_pred HHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcc-cHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Q psy8160 56 RLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNN-EYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHE 133 (324)
Q Consensus 56 ~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~ 133 (324)
.+..+....+..++|++.+.+++ .+|.+..++...+.++...| .+++++..+++++..+|.+. .+|...+.++.
T Consensus 59 ~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny----~aW~hR~wlL~ 134 (349)
T 3q7a_A 59 YFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSY----QVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCH----HHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHH
Confidence 33334444555678999999999 99999999999999999988 59999999999999999887 89999999999
Q ss_pred Hh-h-cHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcc-cchhHHHHHHHHHHHhhhCCccHHHHHHHHHH
Q psy8160 134 VQ-R-KYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGE-KSHRETLAIHCLQKSIEADPKSGQSLYLLGRC 210 (324)
Q Consensus 134 ~~-~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~ 210 (324)
.. + +++++++.+.+++..+ |.+.. +|...+++......... ......+++.++.++++.+|.+..+|...+.+
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~d--pkNy~--AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~l 210 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPD--PKNYH--TWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYL 210 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSC--TTCHH--HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HhcCCChHHHHHHHHHHHHhC--CCCHH--HHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 88 7 8999999999999999 98855 99999999866321110 01123489999999999999999999999999
Q ss_pred HHHcCC-------HHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCH-------------------HHHHHHH-----
Q psy8160 211 FAAVGK-------VHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNR-------------------EDYHQAL----- 259 (324)
Q Consensus 211 ~~~~~~-------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~-------------------~~A~~~~----- 259 (324)
....++ ++++++++.+++.++|++..+|..+..++...|. . ...+..+
T Consensus 211 L~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (349)
T 3q7a_A 211 RVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSL-PLVPILPAILPYTASKLNPDIETVEAFGFPMP 289 (349)
T ss_dssp HTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-CSGGGHHHHGGGTC--------------CCCC
T ss_pred HHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC-CcccccccccccccccccccchhHHHHHHHHH
Confidence 999987 7999999999999999999999999999888776 4 1223333
Q ss_pred -------------HHHHhhHHHHHHcCCCCcchHHHHHHHhh-hcCCChhhhhh
Q psy8160 260 -------------NKYRDLGDFLVINNIPTSNNNRQCYNSYS-TSIASCKHINN 299 (324)
Q Consensus 260 -------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~ 299 (324)
.++.-|+.+|...|+.++ |+++|+... +.||--...+.
T Consensus 290 ~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~--a~~~~~~l~~~~dpir~~yw~ 341 (349)
T 3q7a_A 290 SDPLPEDTPLPVPLALEYLADSFIEQNRVDD--AAKVFEKLSSEYDQMRAGYWE 341 (349)
T ss_dssp C-CCCSSCCSCCHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHTTCGGGHHHHH
T ss_pred hcccccccCCCcHHHHHHHHHHHHhcCCHHH--HHHHHHHHHhhhChHHHHHHH
Confidence 567789999999999999 999999986 77886554443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.79 E-value=8e-19 Score=128.14 Aligned_cols=109 Identities=13% Similarity=0.036 Sum_probs=100.1
Q ss_pred HHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH-----------H
Q psy8160 192 KSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL-----------N 260 (324)
Q Consensus 192 ~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-----------~ 260 (324)
++..++|+.++.+..+|.+++..|++++|+..|+++++++|.++.+|.++|.++..+|+ +++|+..| .
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~p~~~~ 82 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLME-FQRALDDCDTCIRLDSKFIK 82 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhcc-HHHHHHHHHHHHHhhhhhhH
Confidence 34468899999999999999999999999999999999999999999999999999999 99999998 8
Q ss_pred HHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhh
Q psy8160 261 KYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDF 303 (324)
Q Consensus 261 ~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 303 (324)
+|+++|.+|...|++++ |+..|+++++++|+++.++.++..
T Consensus 83 a~~~lg~~~~~~~~~~~--A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 83 GYIRKAACLVAMREWSK--AQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHHHHHHHHHHTTCHHH--HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHH--HHHHHHHHHHHCcCCHHHHHHHHH
Confidence 89999999999999999 999999999999999999887764
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-16 Score=133.82 Aligned_cols=237 Identities=8% Similarity=-0.013 Sum_probs=191.3
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhcc----------HHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcc-
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNE----------YDSALKHLTLCL-IDASPCTFTKLEGLMFKVNN- 98 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~----------~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~- 98 (324)
++|+..+.+++.++|++ ..++...+.+....+. +++++.++..++ .+|.+..++...+.++...+
T Consensus 47 ~eaL~~t~~~L~~nP~~---ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~ 123 (331)
T 3dss_A 47 ESVLELTSQILGANPDF---ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE 123 (331)
T ss_dssp HHHHHHHHHHHTTCTTC---HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHCchh---HHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCc
Confidence 88999999999999874 5688888888877765 789999999999 99999999999999999988
Q ss_pred -cHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhc-HHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhh
Q psy8160 99 -EYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRK-YKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTL 176 (324)
Q Consensus 99 -~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~ 176 (324)
.+++++.++.+++..+|.+. .+|...+.+....|. ++++++++.+++..+ |.+.. +|..++.+.......
T Consensus 124 ~~~~~EL~~~~k~l~~dprNy----~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~--p~N~S--AW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 124 PNWARELELCARFLEADERNF----HCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYS--SWHYRSCLLPQLHPQ 195 (331)
T ss_dssp CCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--SCCHH--HHHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC--CCCHH--HHHHHHHHHHHhhhc
Confidence 49999999999999999887 899999999999998 599999999999999 88844 999999988653110
Q ss_pred -------cccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHccCCCCHHHH
Q psy8160 177 -------GEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAV-----------GKVHDAFLAYRNSVEKSEGNADTW 238 (324)
Q Consensus 177 -------~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~-----------~~~~~A~~~~~~al~~~p~~~~~~ 238 (324)
+...+.+++++.++.+++..+|++..+|+.+..++... +.++++++.+.+++++.|++...+
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l 275 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCL 275 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHH
Confidence 00125799999999999999999999998666555554 457899999999999999985443
Q ss_pred HHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhch
Q psy8160 239 CSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNK 301 (324)
Q Consensus 239 ~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 301 (324)
..++.+...... .+..++ ....+.+.+++||-...-...+
T Consensus 276 ~~~~~~~~~~~~---------------------~~~~~~--~~~~l~~l~~~Dp~r~~~y~d~ 315 (331)
T 3dss_A 276 LTIILLMRALDP---------------------LLYEKE--TLQYFSTLKAVDPMRAAYLDDL 315 (331)
T ss_dssp HHHHHHHHHHCT---------------------TTTHHH--HHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhhcc---------------------cccHHH--HHHHHHHHHHhCcchhhHHHHH
Confidence 333322222111 233456 8899999999999765544433
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.8e-19 Score=134.41 Aligned_cols=118 Identities=9% Similarity=0.024 Sum_probs=92.4
Q ss_pred HHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHH
Q psy8160 141 AKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDA 220 (324)
Q Consensus 141 A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A 220 (324)
+-..+++++..+ |++ ..+++.+|.+++. .|++++|+..|++++..+|.++.+|+.+|.++...|++++|
T Consensus 21 ~~~~l~~al~l~--p~~--~~~~~~lg~~~~~-------~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A 89 (151)
T 3gyz_A 21 SGATLKDINAIP--DDM--MDDIYSYAYDFYN-------KGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQA 89 (151)
T ss_dssp TSCCTGGGCCSC--HHH--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCCHHHHhCCC--HHH--HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHH
Confidence 334566667777 766 4488888888866 45888888888888888888888888888888888888888
Q ss_pred HHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChh
Q psy8160 221 FLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCK 295 (324)
Q Consensus 221 ~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (324)
+..|++++.++|+++.+|+++|.+|...|+ +++ |+.+|++++++.|+.+
T Consensus 90 i~~~~~al~l~P~~~~~~~~lg~~~~~lg~------------------------~~e--A~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 90 ADLYAVAFALGKNDYTPVFHTGQCQLRLKA------------------------PLK--AKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHHSSSCCHHHHHHHHHHHHTTC------------------------HHH--HHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHhhCCCCcHHHHHHHHHHHHcCC------------------------HHH--HHHHHHHHHHhCCCHH
Confidence 888888888888888888777777777777 556 8888888888888766
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=5.2e-18 Score=155.51 Aligned_cols=163 Identities=11% Similarity=0.004 Sum_probs=98.0
Q ss_pred ccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHH
Q psy8160 65 NEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKD 143 (324)
Q Consensus 65 ~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 143 (324)
|++++|+..|++++ .+|.+..++..+|.++...|++++|++.|++++...|... .++..+|.++...|++++|+.
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHP----EAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCH----HHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHH
Confidence 55666666666666 6666666666666666666666666666666666555543 566677777777777777777
Q ss_pred HHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHc---CCHHHH
Q psy8160 144 SYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAV---GKVHDA 220 (324)
Q Consensus 144 ~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~---~~~~~A 220 (324)
.|+++++.+ |++ ..++..+|.++.. .+++++|+..|+++++.+|.++.++..+|.++... |++++|
T Consensus 79 ~~~~al~~~--p~~--~~~~~~la~~~~~-------~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A 147 (568)
T 2vsy_A 79 LLQQASDAA--PEH--PGIALWLGHALED-------AGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVL 147 (568)
T ss_dssp HHHHHHHHC--TTC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHH
T ss_pred HHHHHHhcC--CCC--HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHH
Confidence 777777766 665 3466777777655 34677777777777777777777777777777777 777777
Q ss_pred HHHHHHHHccCCCCHHHHHHhH
Q psy8160 221 FLAYRNSVEKSEGNADTWCSIG 242 (324)
Q Consensus 221 ~~~~~~al~~~p~~~~~~~~lg 242 (324)
+..++++++.+|.+...+..++
T Consensus 148 ~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 148 SAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHHHHhcCCcccChHHHhC
Confidence 7777777777777666665555
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.6e-17 Score=139.06 Aligned_cols=196 Identities=14% Similarity=-0.004 Sum_probs=155.0
Q ss_pred HHHHHHHHHHhccC--------CCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCC------chhhHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVD--------PSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASP------CTFTKLEGLMFK 95 (324)
Q Consensus 31 ~~A~~~~~~~l~~~--------p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~------~~~~~~la~~~~ 95 (324)
++|.+.++++.+.. +++..+...+...|.+|...|++++|+.+|.+++ +.+.. ...+..+|.+|.
T Consensus 8 ~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~ 87 (307)
T 2ifu_A 8 SEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLK 87 (307)
T ss_dssp HHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 56777777666533 3434445677888999999999999999999999 65432 345666899999
Q ss_pred hcccHHHHHHHHHHHHHhcCCCc--ccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCc--hhhHHHHHHHHHHH
Q psy8160 96 VNNEYDSALKHLTLCLIDASPCT--FTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVH--LKADICRQLGWMYH 171 (324)
Q Consensus 96 ~~~~~~~A~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~l~~~~~ 171 (324)
..|++++|+.+|++++...+... .....++.++|.+|.. |++++|+.+|++++.......+ ..+.++..+|.++.
T Consensus 88 ~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~ 166 (307)
T 2ifu_A 88 DLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLV 166 (307)
T ss_dssp HTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence 99999999999999987743322 2345788999999998 9999999999999987621111 12568899999997
Q ss_pred hhhhhcccchhHHHHHHHHHHHhhhCCcc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q psy8160 172 CIDTLGEKSHRETLAIHCLQKSIEADPKS------GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNA 235 (324)
Q Consensus 172 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 235 (324)
. .+++++|+.+|++++.+.|.+ ..++..+|.++...|++++|+..|++++ ++|...
T Consensus 167 ~-------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~ 228 (307)
T 2ifu_A 167 R-------QQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS 228 (307)
T ss_dssp H-------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred H-------cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence 7 559999999999999876544 3578889999999999999999999999 999764
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-17 Score=138.84 Aligned_cols=163 Identities=11% Similarity=0.037 Sum_probs=83.4
Q ss_pred CCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhh
Q psy8160 81 ASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKA 160 (324)
Q Consensus 81 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 160 (324)
|.+......+|..+...|++++|+..|++++...|.+. .+++.+|.++...|++++|+..+++++..+ |+..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~----~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~-- 185 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNG----EIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTR-- 185 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCH----HHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHH--
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcch----hHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchH--
Confidence 33334444444444444444444444444444444443 455555555555555555555555555555 4321
Q ss_pred HHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC--HHHH
Q psy8160 161 DICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN--ADTW 238 (324)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~ 238 (324)
......+..+.. .++.++|+..+++++..+|+++.+++.+|.++...|++++|+..|++++..+|++ +.++
T Consensus 186 ~~~~~~~~~l~~-------~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 186 YQGLVAQIELLX-------QAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp HHHHHHHHHHHH-------HHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred HHHHHHHHHHHh-------hcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 122222322222 1244445555555555555555555555555555555555555555555555555 5555
Q ss_pred HHhHHHHhhcCCCHHHHHHHH
Q psy8160 239 CSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 239 ~~lg~~~~~~~~~~~~A~~~~ 259 (324)
..+|.++...|+ .++|+..|
T Consensus 259 ~~l~~~~~~~g~-~~~a~~~~ 278 (287)
T 3qou_A 259 XTFQEILAALGT-GDALASXY 278 (287)
T ss_dssp HHHHHHHHHHCT-TCHHHHHH
T ss_pred HHHHHHHHHcCC-CCcHHHHH
Confidence 555555555555 55555554
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-17 Score=138.63 Aligned_cols=162 Identities=17% Similarity=0.129 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Q psy8160 52 EVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAH 130 (324)
Q Consensus 52 ~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~ 130 (324)
+.++.+|..+...|++++|+..|++++ .+|++..++..+|.++...|++++|+..+++++...|... ......+.
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~----~~~~~~~~ 193 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTR----YQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHH----HHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchH----HHHHHHHH
Confidence 344445555555555555555555555 4555555555555555555555555555544444443211 22333333
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc--HHHHHHHH
Q psy8160 131 LHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS--GQSLYLLG 208 (324)
Q Consensus 131 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~lg 208 (324)
.+...++.+.|+..|++++..+ |++ ..+++.+|.++.. .|++++|+..|+++++.+|.+ ..++..+|
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~--P~~--~~~~~~la~~l~~-------~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~ 262 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAEN--PED--AALATQLALQLHQ-------VGRNEEALELLFGHLRXDLTAADGQTRXTFQ 262 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTGGGGHHHHHHH
T ss_pred HHHhhcccCccHHHHHHHHhcC--Ccc--HHHHHHHHHHHHH-------cccHHHHHHHHHHHHhcccccccchHHHHHH
Confidence 3444444444555555555444 444 2244444544433 224555555555555554444 44445555
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q psy8160 209 RCFAAVGKVHDAFLAYRNSV 228 (324)
Q Consensus 209 ~~~~~~~~~~~A~~~~~~al 228 (324)
.++...|+.++|...|++++
T Consensus 263 ~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 263 EILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHcCCCCcHHHHHHHHH
Confidence 55555555555555554443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.76 E-value=7.9e-17 Score=128.62 Aligned_cols=193 Identities=12% Similarity=0.045 Sum_probs=157.0
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcc----cHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNN----EYDSALKH 106 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~----~~~~A~~~ 106 (324)
.+|+++|+++.+.. ++.+++.+|.+|...+++++|+.+|++++ ++.+..+...+|.+|.. + ++++|+.+
T Consensus 3 ~eA~~~~~~aa~~g-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~-~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG-----DRRAQYYLADTWVSSGDYQKAEYWAQKAA-AQGDGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HTTCHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35788999998764 46689999999999999999999999998 22567888899999998 6 89999999
Q ss_pred HHHHHHhcCCCcccHHHHHHHHHHHHHH----hhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchh
Q psy8160 107 LTLCLIDASPCTFTKLEVRFHIAHLHEV----QRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHR 182 (324)
Q Consensus 107 ~~~~l~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 182 (324)
|+++.... . +.+++.+|.+|.. .+++++|+.+|++++... |....+.+++.+|.+|..... ..++
T Consensus 76 ~~~A~~~g--~----~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~~~~a~~~Lg~~y~~g~g---~~~d 144 (212)
T 3rjv_A 76 AEKAVEAG--S----KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS--ESDAAVDAQMLLGLIYASGVH---GPED 144 (212)
T ss_dssp HHHHHHTT--C----HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST--TSHHHHHHHHHHHHHHHHTSS---SSCC
T ss_pred HHHHHHCC--C----HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC--CCcchHHHHHHHHHHHHcCCC---CCCC
Confidence 99997542 2 3789999999987 789999999999999887 632125599999999965211 1348
Q ss_pred HHHHHHHHHHHhhhCCccHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHccCCCCHHHHHHhHHH
Q psy8160 183 ETLAIHCLQKSIEADPKSGQSLYLLGRCFAAV-G-----KVHDAFLAYRNSVEKSEGNADTWCSIGNK 244 (324)
Q Consensus 183 ~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~-~-----~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 244 (324)
+++|+.+|+++++. |.++.+++.||.+|... | ++++|+.+|+++.+.. ++.+...++.+
T Consensus 145 ~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g--~~~A~~~l~~l 209 (212)
T 3rjv_A 145 DVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG--FDTGCEEFDRI 209 (212)
T ss_dssp HHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT--CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHh
Confidence 99999999999988 67788999999999864 3 8999999999998875 45555555543
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.8e-18 Score=143.62 Aligned_cols=203 Identities=10% Similarity=-0.021 Sum_probs=93.3
Q ss_pred hccHHHHHHHHHHHh-cCCCCch-----------hhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCc--ccHHHHHHHHH
Q psy8160 64 NNEYDSALKHLTLCL-IDASPCT-----------FTKLEGLMFKVNNEYDSALKHLTLCLIDASPCT--FTKLEVRFHIA 129 (324)
Q Consensus 64 ~~~~~~A~~~~~~al-~~~~~~~-----------~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~--~~~~~~~~~la 129 (324)
.|++++|.++++++. ..+.... .+...+.+|...|++++|+.+|++++...+... .....++.++|
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 466677777777666 3332100 011123444444555555555555444322111 11223444445
Q ss_pred HHHHHhhcHHHHHHHHHHHHhcCCCCCchh--hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc------H
Q psy8160 130 HLHEVQRKYKTAKDSYEQLLKEDDLPVHLK--ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS------G 201 (324)
Q Consensus 130 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~------~ 201 (324)
.++..+|++++|+.+|++++.+.....+.. +.++..+|.+|. . | ++++|+.+|++++++.|.. .
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~---~-g----~~~~A~~~~~~Al~~~~~~~~~~~~~ 155 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLME---P-L----DLSKAVHLYQQAAAVFENEERLRQAA 155 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT---T-T----CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---c-C----CHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 555555555555555555555442222222 233444444441 1 2 4555555555554443322 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHH
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNR 281 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~ 281 (324)
.++..+|.++..+|++++|+..|++++.+.|.+...+ ..+ .++..+|.++...|++++ |+
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------------~~~----~~~~~~g~~~~~~g~~~~--A~ 215 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYP--------------TCY----KKCIAQVLVQLHRADYVA--AQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH--------------HHH----HHHHHHHHHHHHTTCHHH--HH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChh--------------HHH----HHHHHHHHHHHHcCCHHH--HH
Confidence 3444455555555555555555555544433221000 000 245556666666666777 77
Q ss_pred HHHHHhhhcCCChh
Q psy8160 282 QCYNSYSTSIASCK 295 (324)
Q Consensus 282 ~~~~~al~~~p~~~ 295 (324)
.+|++++ ++|+.+
T Consensus 216 ~~~~~al-~~p~~~ 228 (307)
T 2ifu_A 216 KCVRESY-SIPGFS 228 (307)
T ss_dssp HHHHHHT-TSTTST
T ss_pred HHHHHHh-CCCCCC
Confidence 7777777 666544
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-19 Score=154.75 Aligned_cols=180 Identities=12% Similarity=0.033 Sum_probs=143.4
Q ss_pred HhccHHHHHHHHHH----Hh-cCCCCchhhHHHHHHH------------HhcccHHHHHHHHHHHHHhcCCCcccHHHHH
Q psy8160 63 VNNEYDSALKHLTL----CL-IDASPCTFTKLEGLMF------------KVNNEYDSALKHLTLCLIDASPCTFTKLEVR 125 (324)
Q Consensus 63 ~~~~~~~A~~~~~~----al-~~~~~~~~~~~la~~~------------~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 125 (324)
..+.+++|+..++. ++ ++|.... ...|... ...+++++|+..+++++...|.. ..++
T Consensus 77 ~~~~~e~al~~~~~Ge~~~l~i~p~~ay--g~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~----a~~~ 150 (336)
T 1p5q_A 77 LPYGLERAIQRMEKGEHSIVYLKPSYAF--GSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQ----STIV 150 (336)
T ss_dssp CCHHHHHHHTTCCTTCEEEEEECTTTTT--TTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHH----HHHH
T ss_pred cchHHHHHHhcCCCCCeEEEEECCcccc--CcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHH----HHHH
Confidence 34566777777766 66 6666522 2222111 13456666666666666554433 3788
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCch-------------hhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHH
Q psy8160 126 FHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHL-------------KADICRQLGWMYHCIDTLGEKSHRETLAIHCLQK 192 (324)
Q Consensus 126 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~-------------~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~ 192 (324)
..+|.++...|++++|+..|++++... |... ...++.++|.++.. .+++++|+.+|++
T Consensus 151 ~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-------~g~~~~A~~~~~~ 221 (336)
T 1p5q_A 151 KERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLK-------LQAFSAAIESCNK 221 (336)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHH-------TTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHH-------cCCHHHHHHHHHH
Confidence 899999999999999999999999988 6652 13599999999977 5599999999999
Q ss_pred HhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHH
Q psy8160 193 SIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQA 258 (324)
Q Consensus 193 al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~ 258 (324)
+++++|.++.+++.+|.++..+|++++|+..|+++++++|+++.++..+|.++...|+ +++|...
T Consensus 222 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~-~~~a~~~ 286 (336)
T 1p5q_A 222 ALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRR-QLAREKK 286 (336)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 9998543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-17 Score=151.71 Aligned_cols=147 Identities=14% Similarity=0.097 Sum_probs=119.0
Q ss_pred cccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhh
Q psy8160 97 NNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTL 176 (324)
Q Consensus 97 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~ 176 (324)
.|++++|+..|++++...|... .+++.+|.++...|++++|+..|+++++.+ |++ ..++..+|.++..
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~lg~~~~~---- 69 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDF----VAWLMLADAELGMGDTTAGEMAVQRGLALH--PGH--PEAVARLGRVRWT---- 69 (568)
T ss_dssp -------------------CCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--TTC--HHHHHHHHHHHHH----
T ss_pred CccHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC--HHHHHHHHHHHHH----
Confidence 5789999999999998888765 889999999999999999999999999999 887 5599999999977
Q ss_pred cccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhc---CCCHH
Q psy8160 177 GEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSN---NSNRE 253 (324)
Q Consensus 177 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---~~~~~ 253 (324)
.+++++|+.+++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++... |+ ++
T Consensus 70 ---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~-~~ 145 (568)
T 2vsy_A 70 ---QQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRA-LD 145 (568)
T ss_dssp ---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTT-HH
T ss_pred ---CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccc-HH
Confidence 559999999999999999999999999999999999999999999999999999999999999999999 88 77
Q ss_pred HHHHHH
Q psy8160 254 DYHQAL 259 (324)
Q Consensus 254 ~A~~~~ 259 (324)
+|+..|
T Consensus 146 ~A~~~~ 151 (568)
T 2vsy_A 146 VLSAQV 151 (568)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777766
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.9e-18 Score=128.88 Aligned_cols=103 Identities=12% Similarity=0.089 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH
Q psy8160 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG 201 (324)
Q Consensus 122 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 201 (324)
.++++.+|.++...|++++|+..|++++..+ |.+ +.+|..+|.++.. .+++++|+.+|+++++++|+++
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~--~~~~~~lg~~~~~-------~g~~~~Ai~~~~~al~l~P~~~ 104 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYN--VDYIMGLAAIYQI-------KEQFQQAADLYAVAFALGKNDY 104 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC--HHHHHHHHHHHHH-------HccHHHHHHHHHHHHhhCCCCc
Confidence 3789999999999999999999999999999 888 5599999999977 5599999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNA 235 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 235 (324)
.+|+.+|.++..+|++++|+..|++++++.|+.+
T Consensus 105 ~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 105 TPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999999765
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.74 E-value=3.7e-16 Score=149.84 Aligned_cols=228 Identities=8% Similarity=0.006 Sum_probs=161.7
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Q psy8160 51 NEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAH 130 (324)
Q Consensus 51 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~ 130 (324)
+.+|+.+|..+...|++++|+..|.++ ++...+...+..+...|++++|+++|..+....++.. +...+|.
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~-----Idt~Laf 1175 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY-----VETELIF 1175 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccccc-----ccHHHHH
Confidence 346667777777777777777777643 5555566667777777777777777766665543322 1223666
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHH
Q psy8160 131 LHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRC 210 (324)
Q Consensus 131 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~ 210 (324)
+|.+++++++ ++.| +. . ++ ...+..+|..+.. .+++++|+.+|.++ ..|..+|.+
T Consensus 1176 aYAKl~rlee-le~f---I~-~--~n---~ad~~~iGd~le~-------eg~YeeA~~~Y~kA--------~ny~rLA~t 1230 (1630)
T 1xi4_A 1176 ALAKTNRLAE-LEEF---IN-G--PN---NAHIQQVGDRCYD-------EKMYDAAKLLYNNV--------SNFGRLAST 1230 (1630)
T ss_pred HHHhhcCHHH-HHHH---Hh-C--CC---HHHHHHHHHHHHh-------cCCHHHHHHHHHhh--------hHHHHHHHH
Confidence 6666666653 3333 11 1 22 1245567777755 45888888888885 478888899
Q ss_pred HHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH-------HHHHhhHHHHHHcCCCCcchHHHH
Q psy8160 211 FAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL-------NKYRDLGDFLVINNIPTSNNNRQC 283 (324)
Q Consensus 211 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-------~~~~~lg~~~~~~~~~~~~~A~~~ 283 (324)
+...|++++|++.+++| .++.+|...+.++...|+ +..|..+. +.+..++..|...|.+++ |+..
T Consensus 1231 LvkLge~q~AIEaarKA-----~n~~aWkev~~acve~~E-f~LA~~cgl~Iiv~~deLeeli~yYe~~G~feE--AI~L 1302 (1630)
T 1xi4_A 1231 LVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKE-FRLAQMCGLHIVVHADELEELINYYQDRGYFEE--LITM 1302 (1630)
T ss_pred HHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhH-HHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHH--HHHH
Confidence 99999999999999888 567888888888888888 99888887 567789999999999999 9999
Q ss_pred HHHhhhcCCChhhhhhchhhhcc-CChhhHHHHHHHHh
Q psy8160 284 YNSYSTSIASCKHINNNKDFSNN-SNREDYHQALNKYR 320 (324)
Q Consensus 284 ~~~al~~~p~~~~~~~~l~~~~~-~~~~~~~~a~~~~~ 320 (324)
+++++.++|.+..+...++.+.. ..-++.-+++..|-
T Consensus 1303 lE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1303 LEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999999988877765533 33455555555443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.6e-16 Score=132.34 Aligned_cols=209 Identities=11% Similarity=0.034 Sum_probs=174.4
Q ss_pred HHhccHH-HHHHHHHHHh-cCCCCchhhHHHHHHHHhccc----------HHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Q psy8160 62 KVNNEYD-SALKHLTLCL-IDASPCTFTKLEGLMFKVNNE----------YDSALKHLTLCLIDASPCTFTKLEVRFHIA 129 (324)
Q Consensus 62 ~~~~~~~-~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~~l~~~~~~~~~~~~~~~~la 129 (324)
...|+++ +|+..+..++ .+|.+..++...+.++...+. +++++.+++.++..+|.+. .+|...+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny----~aW~hR~ 115 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY----GTWHHRC 115 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH----HHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCH----HHHHHHH
Confidence 3556665 7999999999 999999999999998887766 7899999999999999987 8999999
Q ss_pred HHHHHhhc--HHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchh-HHHHHHHHHHHhhhCCccHHHHHH
Q psy8160 130 HLHEVQRK--YKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHR-ETLAIHCLQKSIEADPKSGQSLYL 206 (324)
Q Consensus 130 ~~~~~~~~--~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~ 206 (324)
.+....++ +++++.++.+++..+ |.+.. +|...+++... .+. +++++.++.++++.+|.+..+|..
T Consensus 116 wlL~~l~~~~~~~EL~~~~k~l~~d--prNy~--AW~~R~~vl~~-------l~~~~~eel~~~~~~I~~~p~N~SAW~~ 184 (331)
T 3dss_A 116 WLLSRLPEPNWARELELCARFLEAD--ERNFH--CWDYRRFVAAQ-------AAVAPAEELAFTDSLITRNFSNYSSWHY 184 (331)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHHHHC--TTCHH--HHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHCSCCHHHHHH
T ss_pred HHHhccCcccHHHHHHHHHHHHHhC--CCCHH--HHHHHHHHHHH-------hCcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 99999984 899999999999999 98855 99999999865 225 689999999999999999999999
Q ss_pred HHHHHHHc--------------CCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhc-CCCHHHHHHHHHHHHhhHHHHHH
Q psy8160 207 LGRCFAAV--------------GKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSN-NSNREDYHQALNKYRDLGDFLVI 271 (324)
Q Consensus 207 lg~~~~~~--------------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-~~~~~~A~~~~~~~~~lg~~~~~ 271 (324)
++.+.... +.++++++++.+++..+|++..+|+.+..++... |. .. ++ -..
T Consensus 185 R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~-~~-----------~~--~~~ 250 (331)
T 3dss_A 185 RSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGR-CE-----------LS--VEK 250 (331)
T ss_dssp HHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCG-GG-----------CC--HHH
T ss_pred HHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCc-cc-----------cc--hHH
Confidence 99998887 5689999999999999999999997665555443 43 11 11 111
Q ss_pred cCCCCcchHHHHHHHhhhcCCChhhhhhch
Q psy8160 272 NNIPTSNNNRQCYNSYSTSIASCKHINNNK 301 (324)
Q Consensus 272 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 301 (324)
.+.+++ +++++.++++.+|++..+...+
T Consensus 251 ~~~l~~--el~~~~elle~~pd~~w~l~~~ 278 (331)
T 3dss_A 251 STVLQS--ELESCKELQELEPENKWCLLTI 278 (331)
T ss_dssp HHHHHH--HHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHH--HHHHHHHHHhhCcccchHHHHH
Confidence 234677 9999999999999987654443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.5e-16 Score=124.82 Aligned_cols=162 Identities=12% Similarity=-0.014 Sum_probs=133.9
Q ss_pred HHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhh----cHHHHHHH
Q psy8160 69 SALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQR----KYKTAKDS 144 (324)
Q Consensus 69 ~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~----~~~~A~~~ 144 (324)
+|+++|+++.. ..+..+...+|.++...+++++|+.+|++++... . +.+++.+|.+|.. + ++++|+.+
T Consensus 4 eA~~~~~~aa~-~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--~----~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAE-AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--D----GDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHHH-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--C----HHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred hHHHHHHHHHH-CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--C----HHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 57788888872 2677888899999999999999999999998653 2 3789999999988 6 89999999
Q ss_pred HHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCC--ccHHHHHHHHHHHHH----cCCHH
Q psy8160 145 YEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADP--KSGQSLYLLGRCFAA----VGKVH 218 (324)
Q Consensus 145 ~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~lg~~~~~----~~~~~ 218 (324)
|+++.+.. + +.+++.+|.+|..-.. ..+++++|+.+|+++++..| .++.+++.||.+|.. .++++
T Consensus 76 ~~~A~~~g----~--~~a~~~Lg~~y~~g~g---~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~ 146 (212)
T 3rjv_A 76 AEKAVEAG----S--KSGEIVLARVLVNRQA---GATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDV 146 (212)
T ss_dssp HHHHHHTT----C--HHHHHHHHHHHTCGGG---SSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHH
T ss_pred HHHHHHCC----C--HHHHHHHHHHHHcCCC---CccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHH
Confidence 99997643 3 4589999999954211 13489999999999999888 458999999999999 88999
Q ss_pred HHHHHHHHHHccCCCCHHHHHHhHHHHhhc
Q psy8160 219 DAFLAYRNSVEKSEGNADTWCSIGNKDFSN 248 (324)
Q Consensus 219 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 248 (324)
+|+.+|+++++. |.++.++++||.+|...
T Consensus 147 ~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g 175 (212)
T 3rjv_A 147 KASEYFKGSSSL-SRTGYAEYWAGMMFQQG 175 (212)
T ss_dssp HHHHHHHHHHHT-SCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHHcC
Confidence 999999999988 67788888999888754
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-17 Score=144.15 Aligned_cols=239 Identities=8% Similarity=-0.006 Sum_probs=114.1
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLC 110 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 110 (324)
++|.++++++ | .+++|..+|..+...|++++|++.|.++ .+...+...+..+...|++++|+++++.+
T Consensus 20 d~A~~fae~~----~----~~~vWs~La~A~l~~g~~~eAIdsfika----~D~~~y~~V~~~ae~~g~~EeAi~yl~~a 87 (449)
T 1b89_A 20 DRAYEFAERC----N----EPAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQMA 87 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhC----C----ChHHHHHHHHHHHHcCCHHHHHHHHHcC----CCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 8888888887 2 1248999999999999999999999764 34446667788888899999999999988
Q ss_pred HHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHH
Q psy8160 111 LIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCL 190 (324)
Q Consensus 111 l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~ 190 (324)
.+..++ . .+...++.+|...|++.++.+.++. |+. .+|..+|..+.. .|.+++|..+|
T Consensus 88 rk~~~~-~----~i~~~Li~~Y~Klg~l~e~e~f~~~-------pn~---~a~~~IGd~~~~-------~g~yeeA~~~Y 145 (449)
T 1b89_A 88 RKKARE-S----YVETELIFALAKTNRLAELEEFING-------PNN---AHIQQVGDRCYD-------EKMYDAAKLLY 145 (449)
T ss_dssp --------------------------CHHHHTTTTTC-------C--------------------------CTTTHHHHH
T ss_pred HHhCcc-c----hhHHHHHHHHHHhCCHHHHHHHHcC-------CcH---HHHHHHHHHHHH-------cCCHHHHHHHH
Confidence 875333 2 5677889999999999998877632 432 399999999976 55999999999
Q ss_pred HHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH-------HHHH
Q psy8160 191 QKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL-------NKYR 263 (324)
Q Consensus 191 ~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-------~~~~ 263 (324)
.++ ..|..+|.++..+|++++|++.|+++ .++.+|...+.++...|+ ++.|..+. +-..
T Consensus 146 ~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~e-f~lA~~~~l~L~~~ad~l~ 211 (449)
T 1b89_A 146 NNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKE-FRLAQMCGLHIVVHADELE 211 (449)
T ss_dssp HHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTC-HHHHHHTTTTTTTCHHHHH
T ss_pred HHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCc-HHHHHHHHHHHHhCHhhHH
Confidence 987 57899999999999999999999999 479999999999999999 99998877 4455
Q ss_pred hhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhcc-CChhhHHHHHHHH
Q psy8160 264 DLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNN-SNREDYHQALNKY 319 (324)
Q Consensus 264 ~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~~~~~~~a~~~~ 319 (324)
.+..+|.+.|++++ |+..+++++.++|.+..+...++.+.. ..-++..+.++.|
T Consensus 212 ~lv~~Yek~G~~eE--ai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~ 266 (449)
T 1b89_A 212 ELINYYQDRGYFEE--LITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELF 266 (449)
T ss_dssp HHHHHHHHTTCHHH--HHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHH--HHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 68889999999999 999999999999999988888876532 3446666666555
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-15 Score=128.39 Aligned_cols=217 Identities=9% Similarity=-0.022 Sum_probs=181.5
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhc-cHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhc-c-cHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNN-EYDSALKHLTLCL-IDASPCTFTKLEGLMFKVN-N-EYDSALKH 106 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~-~-~~~~A~~~ 106 (324)
++|++.+.++|.++|+ ...++...+.+....+ ++++++..+..++ .+|.+..++...+.++... + ++++++++
T Consensus 71 e~AL~lt~~~L~~nP~---~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 71 ERALELTEIIVRMNPA---HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp HHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred HHHHHHHHHHHHhCch---hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 8899999999999987 4568999999999999 5999999999999 9999999999999999887 7 89999999
Q ss_pred HHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHH--------HHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcc
Q psy8160 107 LTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYK--------TAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGE 178 (324)
Q Consensus 107 ~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~--------~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 178 (324)
+.+++..+|.+. .+|...+.+....+.++ ++++.+++++..+ |.+.. +|...+.+.........
T Consensus 148 ~~k~L~~dpkNy----~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~S--AW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 148 IHGSLLPDPKNY----HTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNS--AWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHTSSCTTCH----HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHH--HHHHHHHHHTTSTTCCC
T ss_pred HHHHHHhCCCCH----HHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CCCHH--HHHHHHHHHHhcccccc
Confidence 999999988886 89999999999999888 9999999999999 88854 99999999866321100
Q ss_pred cchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHccC------C
Q psy8160 179 KSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKV--------------------HDAFLAYRNSVEKS------E 232 (324)
Q Consensus 179 ~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~--------------------~~A~~~~~~al~~~------p 232 (324)
....+++++.++++++..+|.+..+|+.+..++...|+. .+-...+...+... +
T Consensus 220 ~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPL 299 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCS
T ss_pred chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCC
Confidence 122478999999999999999999999988888887764 23333333333332 5
Q ss_pred CCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 233 GNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 233 ~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
.++-++.-++.+|...|+ .++|+++|
T Consensus 300 ~s~~al~~l~d~~~~~~~-~~~a~~~~ 325 (349)
T 3q7a_A 300 PVPLALEYLADSFIEQNR-VDDAAKVF 325 (349)
T ss_dssp CCHHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcCC-HHHHHHHH
Confidence 678899999999999999 99999887
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.72 E-value=9.8e-17 Score=131.30 Aligned_cols=213 Identities=11% Similarity=0.017 Sum_probs=159.8
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHH-------HHHHHhcccHHHHHHHHHHHHHhcCCCcc-----
Q psy8160 53 VHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLE-------GLMFKVNNEYDSALKHLTLCLIDASPCTF----- 119 (324)
Q Consensus 53 ~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~l-------a~~~~~~~~~~~A~~~~~~~l~~~~~~~~----- 119 (324)
.+|..|.-+ ..+++..|...|.+++ .+|+.+.+|..+ +.++...+++.+++..+++.+...|....
T Consensus 9 ~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~ 87 (282)
T 4f3v_A 9 SLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAI 87 (282)
T ss_dssp HHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEEC
T ss_pred HHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhcc
Confidence 356666665 5788888888888888 888888888887 78888888888888888888775443211
Q ss_pred ------------cHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHH
Q psy8160 120 ------------TKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAI 187 (324)
Q Consensus 120 ------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~ 187 (324)
...++...++.++...|++++|.+.|..++... |.+ . +.+.+|.+++. .+++++|+
T Consensus 88 ~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~--~-~~~~~a~l~~~-------~~r~~dA~ 155 (282)
T 4f3v_A 88 GGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEH--L-VAWMKAVVYGA-------AERWTDVI 155 (282)
T ss_dssp CTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHH--H-HHHHHHHHHHH-------TTCHHHHH
T ss_pred CCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--Cch--H-HHHHHHHHHHH-------cCCHHHHH
Confidence 234677778888999999999999998887766 765 3 77888888877 55899999
Q ss_pred HHHHHHhhhC-Ccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccC--CC-CHHHHHHhHHHHhhcCCCHHHHHHHHHHH
Q psy8160 188 HCLQKSIEAD-PKS-GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKS--EG-NADTWCSIGNKDFSNNSNREDYHQALNKY 262 (324)
Q Consensus 188 ~~~~~al~~~-~~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~-~~~~~~~lg~~~~~~~~~~~~A~~~~~~~ 262 (324)
..|+++.... |.. ..+++.+|.++..+|++++|+.+|++++... |. .+++++.+|.++..+|+
T Consensus 156 ~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr------------ 223 (282)
T 4f3v_A 156 DQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGN------------ 223 (282)
T ss_dssp HHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTC------------
T ss_pred HHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCC------------
Confidence 9998877653 221 3588999999999999999999999997543 44 45566666666666666
Q ss_pred HhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhc
Q psy8160 263 RDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSN 305 (324)
Q Consensus 263 ~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 305 (324)
.++ |...|++++..+|+ +.+...|....
T Consensus 224 ------------~de--A~~~l~~a~a~~P~-~~~~~aL~~~~ 251 (282)
T 4f3v_A 224 ------------ESA--AVALLEWLQTTHPE-PKVAAALKDPS 251 (282)
T ss_dssp ------------HHH--HHHHHHHHHHHSCC-HHHHHHHHCTT
T ss_pred ------------HHH--HHHHHHHHHhcCCc-HHHHHHHhCCC
Confidence 566 88888888888888 77776665443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.1e-17 Score=124.11 Aligned_cols=121 Identities=16% Similarity=0.109 Sum_probs=101.8
Q ss_pred HHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHH
Q psy8160 106 HLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETL 185 (324)
Q Consensus 106 ~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 185 (324)
.|++++...|.. ..+++.+|.++...|++++|+..|++++..+ |.+ +.++..+|.++.. .+++++
T Consensus 9 ~~~~al~~~p~~----~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~lg~~~~~-------~g~~~~ 73 (148)
T 2vgx_A 9 TIAMLNEISSDT----LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYD--SRFFLGLGACRQA-------MGQYDL 73 (148)
T ss_dssp SHHHHTTCCHHH----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHH-------TTCHHH
T ss_pred hHHHHHcCCHhh----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--ccc--HHHHHHHHHHHHH-------HhhHHH
Confidence 445565555444 3788899999999999999999999999998 887 4589999999976 558999
Q ss_pred HHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHh
Q psy8160 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSI 241 (324)
Q Consensus 186 A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 241 (324)
|+..|++++.++|+++.+++.+|.++...|++++|+..|+++++++|+++......
T Consensus 74 A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 129 (148)
T 2vgx_A 74 AIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELS 129 (148)
T ss_dssp HHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHH
Confidence 99999999999999999999999999999999999999999999999887654433
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-18 Score=148.49 Aligned_cols=183 Identities=17% Similarity=0.173 Sum_probs=156.6
Q ss_pred HHHHHHHHH----HhccCCCcccchHHHHHHHHHHH------------HhccHHHHHHHHHHHh-cCCCCchhhHHHHHH
Q psy8160 31 IKAIKTFQQ----LLYVDPSYLRANEVHLRLGLMFK------------VNNEYDSALKHLTLCL-IDASPCTFTKLEGLM 93 (324)
Q Consensus 31 ~~A~~~~~~----~l~~~p~~~~~~~~~~~lg~~~~------------~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~ 93 (324)
++|+..+.. ++.+.|++. +...|.... ..+++++|+..|++++ .+|.....+..+|.+
T Consensus 82 e~al~~~~~Ge~~~l~i~p~~a-----yg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~ 156 (336)
T 1p5q_A 82 ERAIQRMEKGEHSIVYLKPSYA-----FGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTV 156 (336)
T ss_dssp HHHHTTCCTTCEEEEEECTTTT-----TTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEECCccc-----cCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHH
Confidence 889999988 888888752 333443322 5677888999999888 889999999999999
Q ss_pred HHhcccHHHHHHHHHHHHHhcCCCcc-----------cHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHH
Q psy8160 94 FKVNNEYDSALKHLTLCLIDASPCTF-----------TKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADI 162 (324)
Q Consensus 94 ~~~~~~~~~A~~~~~~~l~~~~~~~~-----------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 162 (324)
+...|++++|+..|++++...|.... ....++.++|.++...|++++|+..|++++..+ |++ ..+
T Consensus 157 ~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~--~~a 232 (336)
T 1p5q_A 157 YFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD--SNN--EKG 232 (336)
T ss_dssp HHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC--HHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCc--HHH
Confidence 99999999999999999998887621 114789999999999999999999999999999 888 459
Q ss_pred HHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHH-HHHHHHHHc
Q psy8160 163 CRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDA-FLAYRNSVE 229 (324)
Q Consensus 163 ~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A-~~~~~~al~ 229 (324)
++.+|.++.. .+++++|+.+|+++++++|.++.++..+|.++...|++++| ...|++++.
T Consensus 233 ~~~lg~~~~~-------~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 233 LSRRGEAHLA-------VNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHH-------TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-------CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999977 55999999999999999999999999999999999999998 456777664
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-16 Score=132.96 Aligned_cols=189 Identities=8% Similarity=-0.016 Sum_probs=145.1
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHI 128 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~l 128 (324)
....++.+|..+...|++++|+..|++++ .+|.+..++..+|.++...|++++|+..+++++...|.+. .+++.+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l 78 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV----KAHFFL 78 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH----HHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH----HHHHHH
Confidence 45678999999999999999999999999 9999999999999999999999999999999998887765 789999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHH
Q psy8160 129 AHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLG 208 (324)
Q Consensus 129 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg 208 (324)
|.++...|++++|+..|++++..+ |++.. .+....+.... ..++...........|.++.+...++
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l~--p~~~~--~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~i~~~l~ 144 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSLA--KEQRL--NFGDDIPSALR----------IAKKKRWNSIEERRIHQESELHSYLT 144 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH--HHTTC--CCCSHHHHHHH----------HHHHHHHHHHHHTCCCCCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--ccchh--hHHHHHHHHHH----------HHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 999999999999999999999887 54421 11111122211 11222233333345677777777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhc-CCCHHHHHHHH
Q psy8160 209 RCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSN-NSNREDYHQAL 259 (324)
Q Consensus 209 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-~~~~~~A~~~~ 259 (324)
... .|++++|++.++++++.+|++......++.++... +. +++|...|
T Consensus 145 ~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~-~~~a~~~f 193 (281)
T 2c2l_A 145 RLI--AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKY-MADMDELF 193 (281)
T ss_dssp HHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHH-HHHHHHHH
Confidence 654 68889999999999999998888877777777666 55 67776666
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-16 Score=129.83 Aligned_cols=201 Identities=11% Similarity=0.036 Sum_probs=168.6
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHH-------HHHHHHhccHHHHHHHHHHHh-cCCCCchhhHH-------------
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRL-------GLMFKVNNEYDSALKHLTLCL-IDASPCTFTKL------------- 89 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~l-------g~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~------------- 89 (324)
..|.+.|.+++.++|+. .++|..+ +.++...+...+++..+++.+ +.|....+...
T Consensus 23 ~~A~~~F~~a~~~dP~~---~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~ 99 (282)
T 4f3v_A 23 ARSLDLFTEITNYDESA---CDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVT 99 (282)
T ss_dssp HHHHHHHHHHHHHCTTC---HHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECS
T ss_pred HHHHHHHHHHHHhChhh---hHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccC
Confidence 89999999999999874 5689999 899999999999999999999 88776655444
Q ss_pred --------HHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhH
Q psy8160 90 --------EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKAD 161 (324)
Q Consensus 90 --------la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 161 (324)
.+.++...|+|++|.+.|+.++...| ... +.+.+|.++...+++++|+..|+.+.... ++.....
T Consensus 100 ~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p----~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~--d~~~~~~ 172 (282)
T 4f3v_A 100 SPLAITMGFAACEAAQGNYADAMEALEAAPVAGS----EHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP--DKFLAGA 172 (282)
T ss_dssp SHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTC----HHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS--CHHHHHH
T ss_pred CHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC----chH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC--CcccHHH
Confidence 67889999999999998887775443 223 78999999999999999999999776653 2222355
Q ss_pred HHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhC--Cc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q psy8160 162 ICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEAD--PK-SGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTW 238 (324)
Q Consensus 162 ~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 238 (324)
+++.+|.++.. .|++++|+.+|++++... |. .+++++.+|.++..+|+.++|...|++++..+|+ +.++
T Consensus 173 a~~~LG~al~~-------LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~ 244 (282)
T 4f3v_A 173 AGVAHGVAAAN-------LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVA 244 (282)
T ss_dssp HHHHHHHHHHH-------TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHH
T ss_pred HHHHHHHHHHH-------CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHH
Confidence 89999999966 559999999999998554 55 6789999999999999999999999999999999 8888
Q ss_pred HHhHHHHhhcC
Q psy8160 239 CSIGNKDFSNN 249 (324)
Q Consensus 239 ~~lg~~~~~~~ 249 (324)
..|...-+...
T Consensus 245 ~aL~~~~~~~~ 255 (282)
T 4f3v_A 245 AALKDPSYRLK 255 (282)
T ss_dssp HHHHCTTCCCC
T ss_pred HHHhCCCCCCC
Confidence 87765544443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=3.3e-17 Score=129.31 Aligned_cols=141 Identities=14% Similarity=-0.001 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCch--------------hhHHHHHHHHHHHhhhhhcccchhHHHHH
Q psy8160 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHL--------------KADICRQLGWMYHCIDTLGEKSHRETLAI 187 (324)
Q Consensus 122 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~--------------~~~~~~~l~~~~~~~~~~~~~~~~~~~A~ 187 (324)
...+..+|..+...|++++|+..|++++... |.+. ...++..+|.++.. .+++++|+
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-------~~~~~~A~ 108 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQILLDKKKNIEISCNLNLATCYNK-------NKDYPKAI 108 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHH-------TTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchhhHHHHHHHHHHHHHHHHHHHHHH-------hcCHHHHH
Confidence 3567788888888888888888888888876 5442 12589999999977 55999999
Q ss_pred HHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHH-HHHHHHHhhH
Q psy8160 188 HCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYH-QALNKYRDLG 266 (324)
Q Consensus 188 ~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~-~~~~~~~~lg 266 (324)
.+++++++.+|.++.+++.+|.++...|++++|+..|++++.++|+++.++..++.++...++ ..++. ..|..++..|
T Consensus 109 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 109 DHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE-ARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH-HHC-------------
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999999999999999999999999 88887 4446777777
Q ss_pred HHHHHc
Q psy8160 267 DFLVIN 272 (324)
Q Consensus 267 ~~~~~~ 272 (324)
.+|...
T Consensus 188 ~~~~~~ 193 (198)
T 2fbn_A 188 PLYEEK 193 (198)
T ss_dssp ------
T ss_pred chhhcc
Confidence 777543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=4.9e-17 Score=122.10 Aligned_cols=108 Identities=10% Similarity=0.001 Sum_probs=103.2
Q ss_pred HHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH--------
Q psy8160 188 HCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL-------- 259 (324)
Q Consensus 188 ~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-------- 259 (324)
..|++++..+|.+..+++.+|.++...|++++|+..|++++..+|+++.+|+.+|.++...|+ +++|+.+|
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQ-YDLAIHSYSYGAVMDI 86 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHST
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhcCC
Confidence 468899999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred ---HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhh
Q psy8160 260 ---NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHIN 298 (324)
Q Consensus 260 ---~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 298 (324)
.+++++|.+|...|++++ |+.+|+++++++|++|...
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~--A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAE--AESGLFLAQELIANXPEFX 126 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHTTCGGGH
T ss_pred CCchHHHHHHHHHHHcCCHHH--HHHHHHHHHHHCcCCCcch
Confidence 899999999999999999 9999999999999987653
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.69 E-value=9.6e-15 Score=140.22 Aligned_cols=216 Identities=12% Similarity=0.077 Sum_probs=156.6
Q ss_pred HHHHHHHHHHhccCCC-cccchHHHH---------------------------HHHHHHHHhccHHHHHHHHHHHhcCCC
Q psy8160 31 IKAIKTFQQLLYVDPS-YLRANEVHL---------------------------RLGLMFKVNNEYDSALKHLTLCLIDAS 82 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~-~~~~~~~~~---------------------------~lg~~~~~~~~~~~A~~~~~~al~~~~ 82 (324)
.+|++.|++++ +.|+ |..+..... .+|.++...|.+++|...|+++-
T Consensus 1002 ~EaieLLEKiv-l~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~IYkKa~---- 1076 (1630)
T 1xi4_A 1002 NELIELLEKIV-LDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFD---- 1076 (1630)
T ss_pred HHHHHHHHHHH-cCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHHHHHHcC----
Confidence 88999999988 5554 322222111 23677777788888888887652
Q ss_pred CchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHH
Q psy8160 83 PCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADI 162 (324)
Q Consensus 83 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 162 (324)
.....+..++...+++++|.+.++++- . ..+|+++|..+...|++++|+++|.++ ++ ...
T Consensus 1077 --~~~~A~~VLie~i~nldrAiE~Aervn-----~----p~vWsqLAKAql~~G~~kEAIdsYiKA-------dD--~sa 1136 (1630)
T 1xi4_A 1077 --VNTSAVQVLIEHIGNLDRAYEFAERCN-----E----PAVWSQLAKAQLQKGMVKEAIDSYIKA-------DD--PSS 1136 (1630)
T ss_pred --CHHHHHHHHHHHHhhHHHHHHHHHhcC-----C----HHHHHHHHHHHHhCCCHHHHHHHHHhc-------CC--hHH
Confidence 111223334446677777777777551 1 368889999999999999999998775 22 347
Q ss_pred HHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhH
Q psy8160 163 CRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242 (324)
Q Consensus 163 ~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 242 (324)
+..++.++.+ .|++++|+++|..+.+..+. +.+-..+|.+|.+.+++++ ++.|. ...+...|..+|
T Consensus 1137 y~eVa~~~~~-------lGkyEEAIeyL~mArk~~~e-~~Idt~LafaYAKl~rlee-le~fI-----~~~n~ad~~~iG 1202 (1630)
T 1xi4_A 1137 YMEVVQAANT-------SGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAE-LEEFI-----NGPNNAHIQQVG 1202 (1630)
T ss_pred HHHHHHHHHH-------cCCHHHHHHHHHHHHhhccc-ccccHHHHHHHHhhcCHHH-HHHHH-----hCCCHHHHHHHH
Confidence 7888888866 44888999999888877743 2223348888888888774 44442 233456777899
Q ss_pred HHHhhcCCCHHHHHHHH---HHHHhhHHHHHHcCCCCcchHHHHHHHhh
Q psy8160 243 NKDFSNNSNREDYHQAL---NKYRDLGDFLVINNIPTSNNNRQCYNSYS 288 (324)
Q Consensus 243 ~~~~~~~~~~~~A~~~~---~~~~~lg~~~~~~~~~~~~~A~~~~~~al 288 (324)
..+...|+ |++|+.+| ..|..+|.+|.+.|++++ |++++++|.
T Consensus 1203 d~le~eg~-YeeA~~~Y~kA~ny~rLA~tLvkLge~q~--AIEaarKA~ 1248 (1630)
T 1xi4_A 1203 DRCYDEKM-YDAAKLLYNNVSNFGRLASTLVHLGEYQA--AVDGARKAN 1248 (1630)
T ss_pred HHHHhcCC-HHHHHHHHHhhhHHHHHHHHHHHhCCHHH--HHHHHHHhC
Confidence 99999999 99999999 889999999999999999 999999994
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.69 E-value=6.5e-17 Score=134.87 Aligned_cols=183 Identities=11% Similarity=0.124 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH
Q psy8160 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG 201 (324)
Q Consensus 122 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 201 (324)
...+..+|..+...|++++|+..|++++..+ |.+ +.++..+|.++.. .+++++|+..++++++++|.++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~la~~~~~-------~~~~~~A~~~~~~al~~~p~~~ 72 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLV--AVYYTNRALCYLK-------MQQPEQALADCRRALELDGQSV 72 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHTTSCTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--Ccc--HHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHhCCCCH
Confidence 3678889999999999999999999999998 877 5599999999977 5599999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH-----HHHHHhHHHHhhcCCCHHHHHHHH-----HHHHhhHHHHHH
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNA-----DTWCSIGNKDFSNNSNREDYHQAL-----NKYRDLGDFLVI 271 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~lg~~~~~~~~~~~~A~~~~-----~~~~~lg~~~~~ 271 (324)
.+++.+|.++...|++++|+..|++++.++|+++ ..|..+ ....... +......- .+...++.++
T Consensus 73 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~i~~~l~~l~-- 147 (281)
T 2c2l_A 73 KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIAKKKR-WNSIEERRIHQESELHSYLTRLI-- 147 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHHHHHH-HHHHHHTCCCCCCHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHHHHHH-HHHHHHHHHhhhHHHHHHHHHHH--
Confidence 9999999999999999999999999999988763 233222 1111122 22211111 4555566655
Q ss_pred cCCCCcchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHhhc
Q psy8160 272 NNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYRDL 322 (324)
Q Consensus 272 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 322 (324)
.|++++ |++.|+++++.+|++..+...+..+.....+.+.+|.+.|...
T Consensus 148 ~~~~~~--A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a 196 (281)
T 2c2l_A 148 AAERER--ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQV 196 (281)
T ss_dssp HHHHHH--HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHH--HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 578889 9999999999999998888877655444446677777776543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2e-15 Score=110.41 Aligned_cols=116 Identities=26% Similarity=0.444 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHH
Q psy8160 124 VRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQS 203 (324)
Q Consensus 124 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 203 (324)
+++.+|.++...|++++|+..+++++... |.+ ..++..+|.++.. .+++++|+..+++++...|.++.+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~--~~~~~~~a~~~~~-------~~~~~~A~~~~~~~~~~~~~~~~~ 71 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD--PRS--AEAWYNLGNAYYK-------QGDYDEAIEYYQKALELDPRSAEA 71 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC--Ccc--hhHHHHHHHHHHH-------hcCHHHHHHHHHHHHHHCCCchHH
Confidence 34455555555555555555555555554 443 2255555555543 225555555555555555555555
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCC
Q psy8160 204 LYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNS 250 (324)
Q Consensus 204 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 250 (324)
++.+|.++...|++++|+..+++++...|.++.++..+|.++...|+
T Consensus 72 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 118 (136)
T 2fo7_A 72 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD 118 (136)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcc
Confidence 55555555555555555555555555555555555555555555444
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3.9e-15 Score=108.82 Aligned_cols=129 Identities=25% Similarity=0.356 Sum_probs=94.9
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHH
Q psy8160 90 EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWM 169 (324)
Q Consensus 90 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~ 169 (324)
+|.++...|++++|+..+++++...|... .++..+|.++...|++++|+..+++++... |.. ..++..+|.+
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~--~~~~~~l~~~ 78 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKALELDPRSA----EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRS--AEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTC--HHHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHcCCcch----hHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCc--hHHHHHHHHH
Confidence 34444444444444444444554444432 567778888888888888888888888877 665 3477888888
Q ss_pred HHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q psy8160 170 YHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEG 233 (324)
Q Consensus 170 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 233 (324)
+.. .+++++|+..+++++...|.++.++..+|.++...|++++|+..+++++..+|+
T Consensus 79 ~~~-------~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 79 YYK-------QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHT-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHH-------hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 866 448888888888888888888888888888888888888888888888888875
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-15 Score=110.90 Aligned_cols=115 Identities=15% Similarity=0.015 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH
Q psy8160 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG 201 (324)
Q Consensus 122 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 201 (324)
++.++.+|..+...|++++|+..|++++..+ |.+ +.++..+|.++.. .+++++|+..++++++++|.++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~--~~~~~~~a~~~~~-------~~~~~~A~~~~~~al~~~p~~~ 72 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PED--ARGYSNRAAALAK-------LMSFPEAIADCNKAIEKDPNFV 72 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCC--hHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHhCCCcH
Confidence 4678999999999999999999999999999 887 5599999999977 5599999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccC------CCCHHHHHHhHHHHhh
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEKS------EGNADTWCSIGNKDFS 247 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~ 247 (324)
.+|+.+|.++...|++++|+..|++++.++ |+++.++..++.+...
T Consensus 73 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 73 RAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999 9999999999887654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-16 Score=118.83 Aligned_cols=127 Identities=12% Similarity=0.056 Sum_probs=104.7
Q ss_pred HHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHH
Q psy8160 107 LTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLA 186 (324)
Q Consensus 107 ~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A 186 (324)
|++++...|.. ...++.+|.++...|++++|+..|++++..+ |.+ +.++..+|.++.. .+++++|
T Consensus 7 l~~al~~~p~~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~lg~~~~~-------~g~~~~A 71 (142)
T 2xcb_A 7 LAMLRGLSEDT----LEQLYALGFNQYQAGKWDDAQKIFQALCMLD--HYD--ARYFLGLGACRQS-------LGLYEQA 71 (142)
T ss_dssp --CCTTCCHHH----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHH-------TTCHHHH
T ss_pred HHHHHcCCHHH----HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC--Ccc--HHHHHHHHHHHHH-------HhhHHHH
Confidence 34444444433 3778899999999999999999999999998 887 4599999999977 5599999
Q ss_pred HHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhc
Q psy8160 187 IHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSN 248 (324)
Q Consensus 187 ~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 248 (324)
+.+|++++.++|.++.+++.+|.++...|++++|+..|++++.++|+++..+.....+....
T Consensus 72 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l 133 (142)
T 2xcb_A 72 LQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAML 133 (142)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998887666555554433
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.9e-15 Score=124.85 Aligned_cols=174 Identities=16% Similarity=0.104 Sum_probs=139.7
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCc------hhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcc--cH
Q psy8160 51 NEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPC------TFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTF--TK 121 (324)
Q Consensus 51 ~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~------~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~--~~ 121 (324)
...+...+..+...|++++|++.+.+++ ..|... .....+|.++...|++++|+..+++++...+.... ..
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 3456778889999999999999999999 766543 22445788889999999999999999976544322 34
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC-CCCCchh--hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCC
Q psy8160 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKED-DLPVHLK--ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADP 198 (324)
Q Consensus 122 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 198 (324)
..++..+|.+|...|++++|+.+|++++... ..|+... ..++.++|.+|.. .+++++|+.+++++++..+
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~-------~~~y~~Al~~~~kal~~~~ 227 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL-------DSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH-------HhhHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999431 1143321 3689999999977 5599999999999998754
Q ss_pred c------cHHHHHHHHHHHHHcCCHHHH-HHHHHHHHccC
Q psy8160 199 K------SGQSLYLLGRCFAAVGKVHDA-FLAYRNSVEKS 231 (324)
Q Consensus 199 ~------~~~~~~~lg~~~~~~~~~~~A-~~~~~~al~~~ 231 (324)
. .+.+++.+|.++...|++++| ..+|++|+.+.
T Consensus 228 ~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 228 RINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 3 268899999999999999999 77899998654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.2e-15 Score=119.87 Aligned_cols=121 Identities=19% Similarity=0.274 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHH
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQ 202 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 202 (324)
..++.+|.++...|++++|+..|++++ + | + +.++..+|.++.. .+++++|+.+|+++++.+|.++.
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~--~-~--~~~~~~lg~~~~~-------~g~~~~A~~~~~~al~~~~~~~~ 72 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--D--P-H--SRICFNIGCMYTI-------LKNMTEAEKAFTRSINRDKHLAV 72 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--S--C-C--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--C--C-C--hHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCccchH
Confidence 457889999999999999999999985 3 3 2 5599999999977 55999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH----------------HHHHHhHHHHhhcCCCHHHHHHH
Q psy8160 203 SLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNA----------------DTWCSIGNKDFSNNSNREDYHQA 258 (324)
Q Consensus 203 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~lg~~~~~~~~~~~~A~~~ 258 (324)
+++.+|.++...|++++|+..|++++...|.++ .+++.+|.++...|+ +++|+..
T Consensus 73 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~ 143 (213)
T 1hh8_A 73 AYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE-WKKAEEQ 143 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC-HHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccC-HHHHHHH
Confidence 999999999999999999999999999998876 555555555555555 4444333
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.67 E-value=6.4e-17 Score=139.80 Aligned_cols=265 Identities=11% Similarity=0.025 Sum_probs=108.2
Q ss_pred hhccccccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhH
Q psy8160 11 EGIVTSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTK 88 (324)
Q Consensus 11 ~~~~~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 88 (324)
+....|++|..||...+... ++|++.|.++ | +...+..++..+...|+|++|+.+++.+..+..++....
T Consensus 27 e~~~~~~vWs~La~A~l~~g~~~eAIdsfika----~----D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~ 98 (449)
T 1b89_A 27 ERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA----D----DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVET 98 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhCCChHHHHHHHHHHHHcCCHHHHHHHHHcC----C----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHH
Confidence 44567788888888777666 8999999764 2 223577788888888888888888877762222233333
Q ss_pred H----------------------------HHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHH
Q psy8160 89 L----------------------------EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKT 140 (324)
Q Consensus 89 ~----------------------------la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 140 (324)
. +|..+...|.|++|..+|.++ +.+..+|.++..+|++++
T Consensus 99 ~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------------~n~~~LA~~L~~Lg~yq~ 166 (449)
T 1b89_A 99 ELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------------SNFGRLASTLVHLGEYQA 166 (449)
T ss_dssp ----------CHHHHTTTTTCC----------------CTTTHHHHHHHT------------TCHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------------hhHHHHHHHHHHhccHHH
Confidence 3 455555555555555555433 124555666666666666
Q ss_pred HHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHH
Q psy8160 141 AKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDA 220 (324)
Q Consensus 141 A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A 220 (324)
|++.++++. + ..+|...+.++.. .++++.|..+... +...|++ ...+..+|...|++++|
T Consensus 167 AVea~~KA~--~-------~~~Wk~v~~aCv~-------~~ef~lA~~~~l~-L~~~ad~---l~~lv~~Yek~G~~eEa 226 (449)
T 1b89_A 167 AVDGARKAN--S-------TRTWKEVCFACVD-------GKEFRLAQMCGLH-IVVHADE---LEELINYYQDRGYFEEL 226 (449)
T ss_dssp HHHHHHHHT--C-------HHHHHHHHHHHHH-------TTCHHHHHHTTTT-TTTCHHH---HHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHcC--C-------chhHHHHHHHHHH-------cCcHHHHHHHHHH-HHhCHhh---HHHHHHHHHHCCCHHHH
Confidence 666666551 1 2255555444433 3356666554443 2233332 33466778888888888
Q ss_pred HHHHHHHHccCCCCHHHHHHhHHHHhhc--CCCHHHHHHHH----------------HHHHhhHHHHHHcCCCCcchHHH
Q psy8160 221 FLAYRNSVEKSEGNADTWCSIGNKDFSN--NSNREDYHQAL----------------NKYRDLGDFLVINNIPTSNNNRQ 282 (324)
Q Consensus 221 ~~~~~~al~~~p~~~~~~~~lg~~~~~~--~~~~~~A~~~~----------------~~~~~lg~~~~~~~~~~~~~A~~ 282 (324)
+..+++++.+++.+...|+.+|.+|.+- ++ ..+.++.| ..|..+..+|.+.++++. |+.
T Consensus 227 i~lLe~aL~le~ah~~~ftel~il~~ky~p~k-~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~--A~~ 303 (449)
T 1b89_A 227 ITMLEAALGLERAHMGMFTELAILYSKFKPQK-MREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN--AII 303 (449)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHH-HHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH--HHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH--HHH
Confidence 8888888888888888888888887654 34 55566666 567888888888888888 777
Q ss_pred HHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHh
Q psy8160 283 CYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYR 320 (324)
Q Consensus 283 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~ 320 (324)
.+-......=++.....-+ .+....+=|.+|+.-|-
T Consensus 304 tm~~h~~~a~~~~~f~~~~--~kv~n~elyYkai~fyl 339 (449)
T 1b89_A 304 TMMNHPTDAWKEGQFKDII--TKVANVELYYRAIQFYL 339 (449)
T ss_dssp HHHHSTTTTCCHHHHHHHH--HHCSSTHHHHHHHHHHH
T ss_pred HHHhCChhhhhhHHHHHHH--hchhHHHHHHHHHHHHH
Confidence 5554432221222222222 12234466777766554
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.8e-15 Score=109.66 Aligned_cols=121 Identities=12% Similarity=0.081 Sum_probs=111.8
Q ss_pred ccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCC
Q psy8160 119 FTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADP 198 (324)
Q Consensus 119 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 198 (324)
......++.+|.++...|++++|+..|++++..+ |.+ ..++..+|.++.. .+++++|+.+++++++.+|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~~--~~~~~~la~~~~~-------~~~~~~A~~~~~~a~~~~~ 81 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--PKD--AKLYSNRAACYTK-------LLEFQLALKDCEECIQLEP 81 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--TTC--HHHHHHHHHHHTT-------TTCHHHHHHHHHHHHHHCT
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCc--HHHHHHHHHHHHH-------hccHHHHHHHHHHHHHhCC
Confidence 3556889999999999999999999999999998 877 5599999999966 5599999999999999999
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCC
Q psy8160 199 KSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNS 250 (324)
Q Consensus 199 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 250 (324)
.++.+++.+|.++...|++++|+..|++++..+|.++.++..++.++...|+
T Consensus 82 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 82 TFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred CchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999987764
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.2e-15 Score=137.14 Aligned_cols=176 Identities=10% Similarity=0.038 Sum_probs=155.3
Q ss_pred HhccH-HHHHHHHHHHh-cCCCCchhhHHHHHHHHhccc----------HHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Q psy8160 63 VNNEY-DSALKHLTLCL-IDASPCTFTKLEGLMFKVNNE----------YDSALKHLTLCLIDASPCTFTKLEVRFHIAH 130 (324)
Q Consensus 63 ~~~~~-~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~ 130 (324)
..|++ ++|++.+.+++ .+|.+..+|...+.++...|+ ++++++++++++..+|.+. .+|...+.
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y----~aW~hR~w 115 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY----GTWHHRCW 115 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCH----HHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCH----HHHHHHHH
Confidence 34444 57788888888 889999888888888888877 8999999999999999887 89999999
Q ss_pred HHHHhh--cHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccch-hHHHHHHHHHHHhhhCCccHHHHHHH
Q psy8160 131 LHEVQR--KYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSH-RETLAIHCLQKSIEADPKSGQSLYLL 207 (324)
Q Consensus 131 ~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~l 207 (324)
++...+ +++++++.+.++++.+ |.+.. +|...+++... .+ .++++++++.++++.+|.+..+|..+
T Consensus 116 ~l~~l~~~~~~~el~~~~k~l~~d--~~N~~--aW~~R~~~l~~-------l~~~~~~el~~~~~~I~~~p~n~saW~~r 184 (567)
T 1dce_A 116 LLSRLPEPNWARELELCARFLEAD--ERNFH--CWDYRRFVAAQ-------AAVAPAEELAFTDSLITRNFSNYSSWHYR 184 (567)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHC--TTCHH--HHHHHHHHHHH-------TCCCHHHHHHHHHTTTTTTCCCHHHHHHH
T ss_pred HHHHcccccHHHHHHHHHHHHhhc--ccccc--HHHHHHHHHHH-------cCCChHHHHHHHHHHHHHCCCCccHHHHH
Confidence 999999 6799999999999999 88855 99999999866 33 68899999999999999999999999
Q ss_pred HHHHHHc--------------CCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHH
Q psy8160 208 GRCFAAV--------------GKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNRED 254 (324)
Q Consensus 208 g~~~~~~--------------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~ 254 (324)
|.++... +.++++++++.+|+.++|++..+|+.++.++...+. +++
T Consensus 185 ~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~-~~~ 244 (567)
T 1dce_A 185 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP-HDV 244 (567)
T ss_dssp HHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC-CSC
T ss_pred HHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC-ccc
Confidence 9998885 567999999999999999999999999999988877 444
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.66 E-value=4.1e-15 Score=113.23 Aligned_cols=127 Identities=18% Similarity=0.105 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc
Q psy8160 121 KLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS 200 (324)
Q Consensus 121 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 200 (324)
.+..++.+|.++...|++++|+..|++++..+ |.+ ..++..+|.++.. .+++++|+.+++++++.+|.+
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~--~~~~~~~a~~~~~-------~~~~~~A~~~~~~a~~~~~~~ 80 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELN--PSN--AIYYGNRSLAYLR-------TECYGYALGDATRAIELDKKY 80 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCC--hHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCccc
Confidence 35678999999999999999999999999998 877 5599999999977 559999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHH--HhhcCCCHHHHHHHH
Q psy8160 201 GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNK--DFSNNSNREDYHQAL 259 (324)
Q Consensus 201 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~--~~~~~~~~~~A~~~~ 259 (324)
+.+++.+|.++...|++++|+..|++++..+|.++.++..++.+ +...|+ +++|+..+
T Consensus 81 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~-~~~A~~~~ 140 (166)
T 1a17_A 81 IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA-FERAIAGD 140 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHHHcc
Confidence 99999999999999999999999999999999999988555544 777788 77777665
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-16 Score=116.19 Aligned_cols=114 Identities=14% Similarity=0.058 Sum_probs=96.4
Q ss_pred hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHH
Q psy8160 160 ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWC 239 (324)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 239 (324)
+.++..+|..++. .+++++|+.+|+++++++|.++.+|.++|.+|..+|++++|+..|+++++++|+++..+.
T Consensus 8 A~a~~~lG~~~~~-------~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 80 (127)
T 4gcn_A 8 AIAEKDLGNAAYK-------QKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYK 80 (127)
T ss_dssp HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhH
Confidence 5688899999987 559999999999999999999999999999999999999999999999999987766555
Q ss_pred HhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhc
Q psy8160 240 SIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNN 300 (324)
Q Consensus 240 ~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 300 (324)
.+|. +|.++|.++...|++++ |+++|+++++..|+ |.+...
T Consensus 81 ~~a~-----------------~~~~lg~~~~~~~~~~~--A~~~~~kal~~~~~-~~~~~~ 121 (127)
T 4gcn_A 81 LIAK-----------------AMSRAGNAFQKQNDLSL--AVQWFHRSLSEFRD-PELVKK 121 (127)
T ss_dssp HHHH-----------------HHHHHHHHHHHTTCHHH--HHHHHHHHHHHSCC-HHHHHH
T ss_pred HHHH-----------------HHHHHHHHHHHcCCHHH--HHHHHHHHHhhCcC-HHHHHH
Confidence 5543 45667778888999999 99999999999885 444333
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.66 E-value=2.5e-16 Score=117.31 Aligned_cols=109 Identities=15% Similarity=-0.001 Sum_probs=100.1
Q ss_pred HHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH--------
Q psy8160 188 HCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL-------- 259 (324)
Q Consensus 188 ~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-------- 259 (324)
..|++++..+|.+...++.+|.++...|++++|+..|++++..+|+++.+|+.+|.++...|+ +++|+.+|
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p 83 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGL-YEQALQSYSYGALMDI 83 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhcCC
Confidence 467888999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred ---HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhh
Q psy8160 260 ---NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINN 299 (324)
Q Consensus 260 ---~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 299 (324)
.+++++|.+|...|++++ |+..|+++++++|+++....
T Consensus 84 ~~~~~~~~lg~~~~~~g~~~~--A~~~~~~al~~~p~~~~~~~ 124 (142)
T 2xcb_A 84 NEPRFPFHAAECHLQLGDLDG--AESGFYSARALAAAQPAHEA 124 (142)
T ss_dssp TCTHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHTCGGGHH
T ss_pred CCcHHHHHHHHHHHHcCCHHH--HHHHHHHHHHhCCCCcchHH
Confidence 789999999999999999 99999999999999886644
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.66 E-value=6.2e-15 Score=117.30 Aligned_cols=132 Identities=15% Similarity=0.178 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Q psy8160 53 VHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLH 132 (324)
Q Consensus 53 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~ 132 (324)
.++.+|.++...|++++|+..|++++ +| +. .+++.+|.++
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~-~~-~~--------------------------------------~~~~~lg~~~ 47 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ-DP-HS--------------------------------------RICFNIGCMY 47 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS-SC-CH--------------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc-CC-Ch--------------------------------------HHHHHHHHHH
Confidence 45666777777777777777666554 22 23 3455555555
Q ss_pred HHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCC--------------
Q psy8160 133 EVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADP-------------- 198 (324)
Q Consensus 133 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-------------- 198 (324)
...|++++|+..|++++..+ |.+ ..++..+|.++.. .+++++|+..|+++++..|
T Consensus 48 ~~~g~~~~A~~~~~~al~~~--~~~--~~~~~~lg~~~~~-------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 116 (213)
T 1hh8_A 48 TILKNMTEAEKAFTRSINRD--KHL--AVAYFQRGMLYYQ-------TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQF 116 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCC
T ss_pred HHcCCHHHHHHHHHHHHHhC--ccc--hHHHHHHHHHHHH-------cccHHHHHHHHHHHHHhCCCccHHHHHHhcccc
Confidence 55555555555555555555 444 2355555555544 2355555555555555444
Q ss_pred --ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q psy8160 199 --KSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNA 235 (324)
Q Consensus 199 --~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 235 (324)
..+.+++.+|.++...|++++|+..|++++.++|++.
T Consensus 117 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 117 KLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp EEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred CccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 4559999999999999999999999999999999864
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.65 E-value=3e-15 Score=114.30 Aligned_cols=116 Identities=17% Similarity=0.137 Sum_probs=105.7
Q ss_pred cHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCc
Q psy8160 120 TKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPK 199 (324)
Q Consensus 120 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 199 (324)
.....++.+|.++...|++++|+..|++++..+ |.+ ..++..+|.++.. .+++++|+.+|+++++++|.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~l~~~~~~-------~g~~~~A~~~~~~al~~~p~ 77 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PAN--PIYLSNRAAAYSA-------SGQHEKAAEDAELATVVDPK 77 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcC--HHHHHHHHHHHHH-------ccCHHHHHHHHHHHHHhCCC
Confidence 446789999999999999999999999999999 887 5599999999977 55999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHh
Q psy8160 200 SGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDF 246 (324)
Q Consensus 200 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 246 (324)
++.+|+.+|.++...|++++|+..|++++.++|+++.+|+..+....
T Consensus 78 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 124 (164)
T 3sz7_A 78 YSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETT 124 (164)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998877765544
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.65 E-value=8.2e-15 Score=122.84 Aligned_cols=172 Identities=16% Similarity=0.136 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCch------hhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCc--ccHHH
Q psy8160 53 VHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCT------FTKLEGLMFKVNNEYDSALKHLTLCLIDASPCT--FTKLE 123 (324)
Q Consensus 53 ~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~------~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~--~~~~~ 123 (324)
.+...+..+...|++++|+..+++++ ..+.... .+..+|.++...|++++|+.++++++...+... .....
T Consensus 77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 3u3w_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 34455778899999999999999999 6665544 223478888889999999999999998544332 23456
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHhcCC-C--CCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc
Q psy8160 124 VRFHIAHLHEVQRKYKTAKDSYEQLLKEDD-L--PVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS 200 (324)
Q Consensus 124 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 200 (324)
++..+|.+|...|++++|+.+|++++.... . .....+.++.++|.+|.. .+++++|+.++++++++.+..
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~-------~~~y~~A~~~~~~al~~~~~~ 229 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL-------DSRYEESLYQVNKAIEISCRI 229 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHc
Confidence 799999999999999999999999995321 0 111226689999999977 559999999999999876543
Q ss_pred ------HHHHHHHHHHHHHcCC-HHHHHHHHHHHHccC
Q psy8160 201 ------GQSLYLLGRCFAAVGK-VHDAFLAYRNSVEKS 231 (324)
Q Consensus 201 ------~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~ 231 (324)
+.+++.+|.++..+|+ +++|+.+|++|+.+.
T Consensus 230 ~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 230 NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 6899999999999994 699999999998753
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-15 Score=118.03 Aligned_cols=133 Identities=13% Similarity=0.105 Sum_probs=109.6
Q ss_pred HhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHH-HHhh
Q psy8160 95 KVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWM-YHCI 173 (324)
Q Consensus 95 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~-~~~~ 173 (324)
...|++++|+..+++++...|... .+++.+|.++...|++++|+.+|++++..+ |.+ ..++..+|.+ +..
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~--~~~~~~la~~l~~~- 91 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNS----EQWALLGEYYLWQNDYSNSLLAYRQALQLR--GEN--AELYAALATVLYYQ- 91 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSC--HHHHHHHHHHHHHH-
T ss_pred hhccCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCC--HHHHHHHHHHHHHh-
Confidence 345778888888888888877665 788999999999999999999999999998 877 4588999988 645
Q ss_pred hhhcccchhH--HHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhH
Q psy8160 174 DTLGEKSHRE--TLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242 (324)
Q Consensus 174 ~~~~~~~~~~--~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 242 (324)
.+++ ++|+..++++++.+|.++.+++.+|.++...|++++|+..|++++..+|+++.....+.
T Consensus 92 ------~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 156 (177)
T 2e2e_A 92 ------ASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVE 156 (177)
T ss_dssp ------TTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHH
T ss_pred ------cCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence 3477 99999999999999999999999999999999999999999999999998876554443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=8.1e-15 Score=106.63 Aligned_cols=119 Identities=13% Similarity=0.129 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc
Q psy8160 121 KLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS 200 (324)
Q Consensus 121 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 200 (324)
....++.+|.++...|++++|+..|++++... |.+ ..++..+|.++.. .+++++|+.++++++..+|.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~--~~~~~~~a~~~~~-------~~~~~~A~~~~~~~~~~~~~~ 79 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN--PAN--AVYFCNRAAAYSK-------LGNYAGAVQDCERAICIDPAY 79 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTC
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCC--HHHHHHHHHHHHH-------hhchHHHHHHHHHHHhcCccC
Confidence 34688999999999999999999999999998 877 5599999999976 459999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCC
Q psy8160 201 GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNS 250 (324)
Q Consensus 201 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 250 (324)
+.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 80 SKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999998887
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.3e-14 Score=119.17 Aligned_cols=156 Identities=12% Similarity=0.057 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchh----hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCc
Q psy8160 124 VRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK----ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPK 199 (324)
Q Consensus 124 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 199 (324)
.+...+..+...|++++|++.+.+++... +.... ...++.+|.++.. .+++++|+.++++++...+.
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~A~~~~~~al~~~~~ 147 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKE--EYHPEFQQFLQWQYYVAAYVLK-------KVDYEYCILELKKLLNQQLT 147 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC--CCCHHHHHHHHHHHHHHHHHHT-------SSCHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccc--cCChhHHHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHhc
Confidence 34455666677777777777777777665 32211 2234445555533 33677777777777765433
Q ss_pred c------HHHHHHHHHHHHHcCCHHHHHHHHHHHH---ccCCCCH----HHHHHhHHHHhhcCCCHHHHHHHH-------
Q psy8160 200 S------GQSLYLLGRCFAAVGKVHDAFLAYRNSV---EKSEGNA----DTWCSIGNKDFSNNSNREDYHQAL------- 259 (324)
Q Consensus 200 ~------~~~~~~lg~~~~~~~~~~~A~~~~~~al---~~~p~~~----~~~~~lg~~~~~~~~~~~~A~~~~------- 259 (324)
. ..++..+|.+|...|++++|+.+|++++ +..|+++ .+++++|.+|...|+ +++|+.+|
T Consensus 148 ~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~-y~~Al~~~~kal~~~ 226 (293)
T 2qfc_A 148 GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR-YEESLYQVNKAIEIS 226 (293)
T ss_dssp SSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhh-HHHHHHHHHHHHHHH
Confidence 2 3567777777777777777777777777 3444432 466777777777777 77777776
Q ss_pred ----------HHHHhhHHHHHHcCCCCcchH-HHHHHHhhhcC
Q psy8160 260 ----------NKYRDLGDFLVINNIPTSNNN-RQCYNSYSTSI 291 (324)
Q Consensus 260 ----------~~~~~lg~~~~~~~~~~~~~A-~~~~~~al~~~ 291 (324)
.+++++|.+|...|++++ | ..+|++|+.+.
T Consensus 227 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~--Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 227 CRINSMALIGQLYYQRGECLRKLEYEEA--EIEDAYKKASFFF 267 (293)
T ss_dssp HHTTBCSSHHHHHHHHHHHHHHTTCCHH--HHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHHcCCcHH--HHHHHHHHHHHHH
Confidence 567788888888888888 8 67788887653
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.6e-15 Score=109.27 Aligned_cols=111 Identities=14% Similarity=0.118 Sum_probs=97.8
Q ss_pred hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHH
Q psy8160 160 ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWC 239 (324)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 239 (324)
+..+..+|..++. .+++++|+..|+++++.+|.++.+|+.+|.++...|++++|+..|++++.++|+++.+|+
T Consensus 4 a~~~~~~g~~~~~-------~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 76 (126)
T 3upv_A 4 AEEARLEGKEYFT-------KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYI 76 (126)
T ss_dssp HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 5688899999877 559999999999999999999999999999999999999999999999999999999988
Q ss_pred HhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcC------CChhhhhhchhh
Q psy8160 240 SIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSI------ASCKHINNNKDF 303 (324)
Q Consensus 240 ~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~l~~ 303 (324)
.+|.++...|+ +++ |+..|+++++++ |+++.+...+..
T Consensus 77 ~lg~~~~~~~~------------------------~~~--A~~~~~~al~~~p~~~~~p~~~~~~~~l~~ 120 (126)
T 3upv_A 77 RKATAQIAVKE------------------------YAS--ALETLDAARTKDAEVNNGSSAREIDQLYYK 120 (126)
T ss_dssp HHHHHHHHTTC------------------------HHH--HHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHhC------------------------HHH--HHHHHHHHHHhCcccCCchhHHHHHHHHHH
Confidence 88888888887 556 888888999988 888777666553
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1e-15 Score=139.34 Aligned_cols=193 Identities=7% Similarity=-0.000 Sum_probs=171.3
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhcc----------HHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcc-
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNE----------YDSALKHLTLCL-IDASPCTFTKLEGLMFKVNN- 98 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~----------~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~- 98 (324)
++|++.+.+++.++|+ ...+|...|.+....++ ++++++.+.+++ .+|.+..+|...+.++...+
T Consensus 46 eeal~~~~~~l~~nP~---~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 46 ESVLELTSQILGANPD---FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp HHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHCch---hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Confidence 8999999999999987 45689999999999988 999999999999 99999999999999999999
Q ss_pred -cHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhh-cHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhh
Q psy8160 99 -EYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQR-KYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTL 176 (324)
Q Consensus 99 -~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~ 176 (324)
+++++++.+++++..+|.+. .+|...+.+....| .++++++++.++++.+ |.+ ..+|..++.++......
T Consensus 123 ~~~~~el~~~~k~l~~d~~N~----~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~--p~n--~saW~~r~~ll~~l~~~ 194 (567)
T 1dce_A 123 PNWARELELCARFLEADERNF----HCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSN--YSSWHYRSCLLPQLHPQ 194 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT--CCC--HHHHHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHHHhhccccc----cHHHHHHHHHHHcCCChHHHHHHHHHHHHHC--CCC--ccHHHHHHHHHHhhccc
Confidence 77999999999999999886 89999999999999 8999999999999999 988 44999999998663111
Q ss_pred c-------ccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHH------------HHHHHHHHHccCCCC
Q psy8160 177 G-------EKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHD------------AFLAYRNSVEKSEGN 234 (324)
Q Consensus 177 ~-------~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~------------A~~~~~~al~~~p~~ 234 (324)
. ...+.++++++++.+++..+|++..+|+.++.++...+++++ |+..|.+++.++|..
T Consensus 195 ~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~~ 271 (567)
T 1dce_A 195 PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRM 271 (567)
T ss_dssp CCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBTT
T ss_pred ccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceeccccc
Confidence 0 013589999999999999999999999999999999988766 667788888888763
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-14 Score=121.30 Aligned_cols=155 Identities=12% Similarity=0.054 Sum_probs=99.8
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchh----hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH
Q psy8160 126 FHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK----ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG 201 (324)
Q Consensus 126 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 201 (324)
...+..+...|++++|+..+++++... +.... ...+..+|.++.. .+++++|+.++++++...+...
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~--~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~Ai~~~~~al~~~~~~~ 149 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKE--EYHPEFQQFLQWQYYVAAYVLK-------KVDYEYCILELKKLLNQQLTGI 149 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC--CCCHHHHHHHHHHHHHHHHHTT-------SSCHHHHHHHHHHHHHTCCCCS
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccc--cCChHHHHHHHHHHHHHHHHHc-------ccCHHHHHHHHHHHHHHhcccc
Confidence 334556666777777777777776654 32221 1123335555533 3367777777777776443322
Q ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHHHHcc-------CCCCHHHHHHhHHHHhhcCCCHHHHHHHH---------
Q psy8160 202 ------QSLYLLGRCFAAVGKVHDAFLAYRNSVEK-------SEGNADTWCSIGNKDFSNNSNREDYHQAL--------- 259 (324)
Q Consensus 202 ------~~~~~lg~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~lg~~~~~~~~~~~~A~~~~--------- 259 (324)
.++..+|.+|...|++++|+.+|+++++. .+..+.+++++|.+|...|+ +++|+.++
T Consensus 150 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~-y~~A~~~~~~al~~~~~ 228 (293)
T 3u3w_A 150 DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR-YEESLYQVNKAIEISCR 228 (293)
T ss_dssp CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHH
Confidence 35677777777777777777777777731 12224466777777777777 77777766
Q ss_pred --------HHHHhhHHHHHHcCC-CCcchHHHHHHHhhhcCC
Q psy8160 260 --------NKYRDLGDFLVINNI-PTSNNNRQCYNSYSTSIA 292 (324)
Q Consensus 260 --------~~~~~lg~~~~~~~~-~~~~~A~~~~~~al~~~p 292 (324)
.+|+++|.+|...|+ +++ |+.+|++|+.+..
T Consensus 229 ~~~~~~~~~~~~~lg~~~~~~g~~~~~--A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 229 INSMALIGQLYYQRGECLRKLEYEEAE--IEDAYKKASFFFD 268 (293)
T ss_dssp TTBCTTHHHHHHHHHHHHHHTTCCHHH--HHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHhCCcHHH--HHHHHHHHHHHHH
Confidence 567888888888885 488 9999999987643
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-15 Score=113.63 Aligned_cols=112 Identities=10% Similarity=0.007 Sum_probs=97.0
Q ss_pred hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCc-------cHH-----HHHHHHHHHHHcCCHHHHHHHHHHH
Q psy8160 160 ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPK-------SGQ-----SLYLLGRCFAAVGKVHDAFLAYRNS 227 (324)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-------~~~-----~~~~lg~~~~~~~~~~~A~~~~~~a 227 (324)
+..+...|..++. .|++++|+..|+++++++|. +.. +|.++|.++..+|++++|+..|+++
T Consensus 11 a~~~~~~G~~l~~-------~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kA 83 (159)
T 2hr2_A 11 AYLALSDAQRQLV-------AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKA 83 (159)
T ss_dssp HHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------CCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5678888888876 55999999999999999998 443 9999999999999999999999999
Q ss_pred Hcc-------CCCCHHHH----HHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhh
Q psy8160 228 VEK-------SEGNADTW----CSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKH 296 (324)
Q Consensus 228 l~~-------~p~~~~~~----~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 296 (324)
+++ +|+++.+| +++|.++..+|+ +++ |+.+|+++++++|++..
T Consensus 84 L~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr------------------------~eE--Al~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 84 LHYFNRRGELNQDEGKLWISAVYSRALALDGLGR------------------------GAE--AMPEFKKVVEMIEERKG 137 (159)
T ss_dssp HHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTC------------------------HHH--HHHHHHHHHHHHHHCCS
T ss_pred HHhhhccccCCCchHHHHHHHHHhHHHHHHHCCC------------------------HHH--HHHHHHHHHhcCCCcHH
Confidence 999 99988888 777776666666 677 99999999999999998
Q ss_pred hhhchhhh
Q psy8160 297 INNNKDFS 304 (324)
Q Consensus 297 ~~~~l~~~ 304 (324)
+...+..+
T Consensus 138 ~~~~~~~~ 145 (159)
T 2hr2_A 138 ETPGKERM 145 (159)
T ss_dssp CCTTHHHH
T ss_pred HHHHHHHH
Confidence 87776554
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-15 Score=117.49 Aligned_cols=117 Identities=13% Similarity=0.210 Sum_probs=107.9
Q ss_pred chhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHH-HhhcCCCH--HHHH
Q psy8160 180 SHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNK-DFSNNSNR--EDYH 256 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~-~~~~~~~~--~~A~ 256 (324)
.+++++|+..+++++..+|.++.+|+.+|.++...|++++|+..|++++.++|+++.++..+|.+ +...|+ + ++|+
T Consensus 23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~-~~~~~A~ 101 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQ-HMTAQTR 101 (177)
T ss_dssp ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT-CCCHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCC-cchHHHH
Confidence 45889999999999999999999999999999999999999999999999999999999999999 889999 9 9999
Q ss_pred HHH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhh
Q psy8160 257 QAL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINN 299 (324)
Q Consensus 257 ~~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 299 (324)
..| .+++.+|.+|...|++++ |+..|+++++.+|+++....
T Consensus 102 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~--A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 102 AMIDKALALDSNEITALMLLASDAFMQANYAQ--AIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHTCCTTSCHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcccHHH--HHHHHHHHHhhCCCCccHHH
Confidence 998 889999999999999999 99999999999999865443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.62 E-value=4e-16 Score=139.00 Aligned_cols=147 Identities=13% Similarity=0.108 Sum_probs=116.1
Q ss_pred ccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCch-------------hhHHHH
Q psy8160 98 NEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHL-------------KADICR 164 (324)
Q Consensus 98 ~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~-------------~~~~~~ 164 (324)
+++++|+..|+.++...|.. ...+..+|.++...|++++|+..|++++..+ |.+. ...++.
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~----a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~ 321 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQ----AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFL 321 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHH----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHHHHH----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHH
Confidence 34445555444444333322 3567777888888888888888888887776 5541 145999
Q ss_pred HHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHH
Q psy8160 165 QLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNK 244 (324)
Q Consensus 165 ~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 244 (324)
++|.++.. .+++++|+.+|+++++++|.++.+|+.+|.++..+|++++|+..|+++++++|++..++..++.+
T Consensus 322 nla~~~~~-------~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 322 NLAMCYLK-------LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHH-------TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHH
T ss_pred HHHHHHHH-------hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999977 55999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCHHHHHHH
Q psy8160 245 DFSNNSNREDYHQA 258 (324)
Q Consensus 245 ~~~~~~~~~~A~~~ 258 (324)
+...++ +++|.+.
T Consensus 395 ~~~~~~-~~~a~~~ 407 (457)
T 1kt0_A 395 QKKAKE-HNERDRR 407 (457)
T ss_dssp HHHHHH-HHHHHHH
T ss_pred HHHHHH-HHHHHHH
Confidence 999999 9888664
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=4.6e-14 Score=100.62 Aligned_cols=114 Identities=12% Similarity=0.098 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH
Q psy8160 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG 201 (324)
Q Consensus 122 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 201 (324)
...++.+|.++...|++++|+..|++++..+ |.+ ..++..+|.++.. .+++++|+..++++++.+|.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~--~~~~~~~a~~~~~-------~~~~~~A~~~~~~~~~~~~~~~ 72 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD--PHN--HVLYSNRSAAYAK-------KGDYQKAYEDGCKTVDLKPDWG 72 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCc--HHHHHHHHHHHHh-------hccHHHHHHHHHHHHHhCcccH
Confidence 4678999999999999999999999999998 877 4599999999976 4599999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHh
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDF 246 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 246 (324)
.+++.+|.++...|++++|+..|++++..+|+++.++..++.+..
T Consensus 73 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 73 KGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999988753
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.4e-15 Score=112.59 Aligned_cols=122 Identities=13% Similarity=0.058 Sum_probs=105.2
Q ss_pred cHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc--------CC--------CCCchhhHHHHHHHHHHHhhhhhcccchhH
Q psy8160 120 TKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKE--------DD--------LPVHLKADICRQLGWMYHCIDTLGEKSHRE 183 (324)
Q Consensus 120 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~~--------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 183 (324)
..+..+...|..++..|++++|+..|++++.. +. .|.. ..++.++|.++.. .+++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~nla~~~~~-------~~~~ 79 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKN--IPLYANMSQCYLN-------IGDL 79 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTH--HHHHHHHHHHHHH-------HTCH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHH--HHHHHHHHHHHHh-------cCcH
Confidence 34577889999999999999999999999987 10 0333 5699999999977 5599
Q ss_pred HHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH-HHHHHhHHHHhhcCC
Q psy8160 184 TLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNA-DTWCSIGNKDFSNNS 250 (324)
Q Consensus 184 ~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~~~ 250 (324)
++|+..++++++++|.++.+|+.+|.++..+|++++|+..|++++.++|+++ .+...++.+....++
T Consensus 80 ~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 80 HEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAE 147 (162)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998 667778777665544
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-14 Score=105.33 Aligned_cols=105 Identities=12% Similarity=0.099 Sum_probs=95.4
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcc---cHHHHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTF---TKLEVR 125 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~---~~~~~~ 125 (324)
.+.++..+|..++..|+|++|+.+|++++ ++|++..++..+|.++...|++++|++.+++++...|.... ..+.++
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 45578899999999999999999999999 99999999999999999999999999999999988765543 345689
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHhcCCCCC
Q psy8160 126 FHIAHLHEVQRKYKTAKDSYEQLLKEDDLPV 156 (324)
Q Consensus 126 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 156 (324)
.++|.++...|++++|++.|++++... |+
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~--~~ 115 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEF--RD 115 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--CC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC--cC
Confidence 999999999999999999999999987 54
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.60 E-value=9e-14 Score=105.71 Aligned_cols=132 Identities=14% Similarity=0.097 Sum_probs=115.1
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHI 128 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~l 128 (324)
....++.+|.++...|++++|+..|++++ .+|.+..++..+|.++...|++++|+..+++++...|... .+++.+
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~~ 87 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI----KGYYRR 87 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH----HHHHHH
Confidence 35678999999999999999999999999 9999999999999999999999999999999999988765 789999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHH--HHhhhhhcccchhHHHHHHHHHHHhhh
Q psy8160 129 AHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWM--YHCIDTLGEKSHRETLAIHCLQKSIEA 196 (324)
Q Consensus 129 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~A~~~~~~al~~ 196 (324)
|.++...|++++|+..|++++..+ |.+.. ++..++.+ +.. .+++++|+..+.++...
T Consensus 88 a~~~~~~~~~~~A~~~~~~a~~~~--p~~~~--~~~~~~~~~~~~~-------~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 88 AASNMALGKFRAALRDYETVVKVK--PHDKD--AKMKYQECNKIVK-------QKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--TTCHH--HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC--CCCHH--HHHHHHHHHHHHH-------HHHHHHHHHcccchHHH
Confidence 999999999999999999999998 87744 55444443 543 45899999999887654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.59 E-value=7.3e-14 Score=100.61 Aligned_cols=117 Identities=26% Similarity=0.384 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH
Q psy8160 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG 201 (324)
Q Consensus 122 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 201 (324)
..+++.+|.++...|++++|+..|++++... |.+ ..++..+|.++.. .+++++|+.++++++...|.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~--~~~~~~la~~~~~-------~~~~~~A~~~~~~~~~~~~~~~ 77 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNN--AEAWYNLGNAYYK-------QGDYDEAIEYYQKALELDPNNA 77 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCc--HHHHHHHHHHHHH-------hCCHHHHHHHHHHHHHhCCccH
Confidence 4678999999999999999999999999988 776 4589999999976 4599999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcC
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNN 249 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 249 (324)
.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|
T Consensus 78 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 78 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999987654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-14 Score=104.92 Aligned_cols=103 Identities=17% Similarity=0.138 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHH
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQ 202 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 202 (324)
..++.+|..+...|++++|+..|++++..+ |++ +.+++.+|.++.. .|++++|+..|+++++++|+++.
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~--~~a~~~lg~~~~~-------~g~~~~A~~~~~~al~l~P~~~~ 86 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKE--PER--EEAWRSLGLTQAE-------NEKDGLAIIALNHARMLDPKDIA 86 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCC--HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCCCHH
Confidence 347888999999999999999999999999 888 5599999999977 55999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH
Q psy8160 203 SLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNAD 236 (324)
Q Consensus 203 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 236 (324)
+++.+|.++...|++++|+..|+++++.+|+++.
T Consensus 87 ~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 87 VHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 9999999999999999999999999999998754
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=7.5e-15 Score=106.10 Aligned_cols=103 Identities=10% Similarity=0.036 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHH
Q psy8160 161 DICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCS 240 (324)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 240 (324)
..++.+|..+.. .|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|+++.+|+.
T Consensus 18 ~~~~~~g~~~~~-------~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~ 90 (121)
T 1hxi_A 18 ENPMEEGLSMLK-------LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAA 90 (121)
T ss_dssp SCHHHHHHHHHH-------TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hhHHHHHHHHHH-------cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 367788888866 5599999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhh
Q psy8160 241 IGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKH 296 (324)
Q Consensus 241 lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 296 (324)
+|.++...|+ +++ |+..|+++++.+|+++.
T Consensus 91 la~~~~~~g~------------------------~~~--A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 91 LAVSHTNEHN------------------------ANA--ALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHH------------------------HHH--HHHHHHHHHC-------
T ss_pred HHHHHHHcCC------------------------HHH--HHHHHHHHHHhCcCCCC
Confidence 9988888887 455 77788888888887653
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-14 Score=107.54 Aligned_cols=111 Identities=14% Similarity=0.115 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCC-------ch---hhHHHHHHHHHHHhhhhhcccchhHHHHHHHHH
Q psy8160 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPV-------HL---KADICRQLGWMYHCIDTLGEKSHRETLAIHCLQ 191 (324)
Q Consensus 122 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-------~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~ 191 (324)
+..+.+.|..++..|++++|+..|++++..+ |+ +. .+.+|.++|.++.. .|++++|+.+++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~~a~~~~~~~a~a~~n~g~al~~-------Lgr~~eAl~~~~ 81 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEIS--HTMPPEEAFDHAGFDAFCHAGLAEALAG-------LRSFDEALHSAD 81 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTTSCCCHHHHHHHHHHHHHHHHHH-------TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCCcchhhhhhccchHHHHHHHHHHHHH-------CCCHHHHHHHHH
Confidence 4678889999999999999999999999998 66 22 13489999999977 559999999999
Q ss_pred HHhhh-------CCccHHHH----HHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHh
Q psy8160 192 KSIEA-------DPKSGQSL----YLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSI 241 (324)
Q Consensus 192 ~al~~-------~~~~~~~~----~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 241 (324)
+++++ +|+++.+| +++|.++..+|++++|+..|+++++++|++......+
T Consensus 82 kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 82 KALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp HHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred HHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 99999 99999999 9999999999999999999999999999886544333
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.5e-14 Score=105.35 Aligned_cols=117 Identities=15% Similarity=0.181 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH
Q psy8160 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG 201 (324)
Q Consensus 122 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 201 (324)
+..++.+|.++...|++++|+..|++++..+ |.+ +.++..+|.++.. .+++++|+..++++++.+|.++
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~--~~~~~~l~~~~~~-------~~~~~~A~~~~~~al~~~p~~~ 77 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLV--AVYYTNRALCYLK-------MQQPEQALADCRRALELDGQSV 77 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCc--HHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHhCchhH
Confidence 4789999999999999999999999999999 887 4599999999977 5599999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC-----CHHHHHHhHHHHhhcC
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEG-----NADTWCSIGNKDFSNN 249 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~~ 249 (324)
.+++.+|.++...|++++|+..|++++.++|+ +..++..+..+.....
T Consensus 78 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~ 130 (137)
T 3q49_B 78 KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRW 130 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988 6777777777665443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-13 Score=114.02 Aligned_cols=206 Identities=8% Similarity=0.013 Sum_probs=157.5
Q ss_pred HHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q psy8160 70 ALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQL 148 (324)
Q Consensus 70 A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 148 (324)
|++.|++.+ ..+........+|.++...|++++|++.+.+.+...|. ....+++..++.++..+|+.+.|.+.+++.
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~--~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEA--EGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCS--TTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--cCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 677788777 54455566678999999999999999999999877651 233588889999999999999999999999
Q ss_pred HhcCCCCCc--hhhHHHHHH--HHHHHhhhhhcccchhHHHHHHHHHHHhhhCCc--cHHHHHHHHHHHHHcCCHHHHHH
Q psy8160 149 LKEDDLPVH--LKADICRQL--GWMYHCIDTLGEKSHRETLAIHCLQKSIEADPK--SGQSLYLLGRCFAAVGKVHDAFL 222 (324)
Q Consensus 149 l~~~~~~~~--~~~~~~~~l--~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~lg~~~~~~~~~~~A~~ 222 (324)
.+.+ |+. ..-.+...+ +|+.... | .+++++|..+|+++.+..|. ++..+++ ++..+|++++|..
T Consensus 163 ~~~~--~d~~~~~d~~l~~Laea~v~l~~---g--~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~ 232 (310)
T 3mv2_B 163 TNAI--EDTVSGDNEMILNLAESYIKFAT---N--KETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQG 232 (310)
T ss_dssp HHHS--CHHHHHHHHHHHHHHHHHHHHHH---T--CSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHH
T ss_pred HhcC--ccccccchHHHHHHHHHHHHHHh---C--CccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHH
Confidence 8888 720 001244444 5555441 2 23799999999999888886 3344444 8999999999999
Q ss_pred HHHHHHcc----------CCCCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCC
Q psy8160 223 AYRNSVEK----------SEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIA 292 (324)
Q Consensus 223 ~~~~al~~----------~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p 292 (324)
.++.+++. +|+++++..++..+....|+ + |.++++++.+..|
T Consensus 233 ~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--------------------------~--a~~l~~qL~~~~P 284 (310)
T 3mv2_B 233 IVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--------------------------D--TEDLTNQLVKLDH 284 (310)
T ss_dssp HHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--------------------------T--THHHHHHHHHTTC
T ss_pred HHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--------------------------H--HHHHHHHHHHhCC
Confidence 99988776 48888887777766655544 6 8999999999999
Q ss_pred ChhhhhhchhhhccCChhhHHHHHHHHh
Q psy8160 293 SCKHINNNKDFSNNSNREDYHQALNKYR 320 (324)
Q Consensus 293 ~~~~~~~~l~~~~~~~~~~~~~a~~~~~ 320 (324)
++|.+..... ....|+++..+|.
T Consensus 285 ~hp~i~d~~~-----k~~~Fd~~~~ky~ 307 (310)
T 3mv2_B 285 EHAFIKHHQE-----IDAKFDELVRKYD 307 (310)
T ss_dssp CCHHHHHHHH-----HHHHHHHHHHTCC
T ss_pred CChHHHHHHH-----HHHHHHHHHHHhc
Confidence 9998866443 2467888887774
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=4.5e-15 Score=116.99 Aligned_cols=88 Identities=16% Similarity=0.109 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHH
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQ 202 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 202 (324)
.++.++|.++...|++++|+..+++++..+ |.+ ..+++.+|.++.. .+++++|+.+|+++++++|.++.
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~--~~~~~~lg~~~~~-------~~~~~~A~~~~~~al~~~p~~~~ 157 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID--KNN--VKALYKLGVANMY-------FGFLEEAKENLYKAASLNPNNLD 157 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTC--HHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--ccc--HHHHHHHHHHHHH-------cccHHHHHHHHHHHHHHCCCcHH
Confidence 678999999999999999999999999998 887 4599999999977 45999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHH
Q psy8160 203 SLYLLGRCFAAVGKVHDAF 221 (324)
Q Consensus 203 ~~~~lg~~~~~~~~~~~A~ 221 (324)
++..++.++...++..++.
T Consensus 158 ~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 158 IRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999998888777666
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=3.7e-15 Score=110.63 Aligned_cols=107 Identities=9% Similarity=0.088 Sum_probs=93.3
Q ss_pred chhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHccCCCCHHHHHHhHHHHhhcC
Q psy8160 180 SHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKV----------HDAFLAYRNSVEKSEGNADTWCSIGNKDFSNN 249 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 249 (324)
.+.+++|+..++++++++|.++++|+++|.++...+++ ++|+..|++|++++|+++++|+++|.+|...|
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 44899999999999999999999999999999999875 59999999999999999999999999999887
Q ss_pred C---CHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhh
Q psy8160 250 S---NREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFS 304 (324)
Q Consensus 250 ~---~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 304 (324)
. .+..| .|++++ |+.+|++|++++|+++..+..+...
T Consensus 95 ~l~P~~~~a----------------~g~~~e--A~~~~~kAl~l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 95 FLTPDETEA----------------KHNFDL--ATQFFQQAVDEQPDNTHYLKSLEMT 134 (158)
T ss_dssp HHCCCHHHH----------------HHHHHH--HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccCcchhhh----------------hccHHH--HHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3 02222 356889 9999999999999998877776543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-14 Score=109.89 Aligned_cols=112 Identities=12% Similarity=0.142 Sum_probs=99.5
Q ss_pred hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhh------------------CCccHHHHHHHHHHHHHcCCHHHHH
Q psy8160 160 ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEA------------------DPKSGQSLYLLGRCFAAVGKVHDAF 221 (324)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------------------~~~~~~~~~~lg~~~~~~~~~~~A~ 221 (324)
+..+...|..++. .+++++|+..|.+++.. +|.+..+|+++|.++..+|++++|+
T Consensus 11 a~~~~~~G~~~~~-------~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~ 83 (162)
T 3rkv_A 11 VEALRQKGNELFV-------QKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAE 83 (162)
T ss_dssp HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 6688999999977 55999999999999998 7777799999999999999999999
Q ss_pred HHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChh-hhhhc
Q psy8160 222 LAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCK-HINNN 300 (324)
Q Consensus 222 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~ 300 (324)
..+++++.++|+++.+|+.+|.++...|+ +++ |+..|+++++++|+++ .+...
T Consensus 84 ~~~~~al~~~p~~~~a~~~~g~~~~~~g~------------------------~~~--A~~~~~~al~l~p~~~~~~~~~ 137 (162)
T 3rkv_A 84 ETSSEVLKREETNEKALFRRAKARIAAWK------------------------LDE--AEEDLKLLLRNHPAAASVVARE 137 (162)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHTTC------------------------HHH--HHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHHhc------------------------HHH--HHHHHHHHHhcCCCCHHHHHHH
Confidence 99999999999999999999988888888 556 8889999999999998 66666
Q ss_pred hhhh
Q psy8160 301 KDFS 304 (324)
Q Consensus 301 l~~~ 304 (324)
+..+
T Consensus 138 l~~~ 141 (162)
T 3rkv_A 138 MKIV 141 (162)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.56 E-value=9.7e-14 Score=122.53 Aligned_cols=198 Identities=10% Similarity=0.038 Sum_probs=95.6
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHh-cCCCCch-----------------hhHHHHHHHHhcccHHHHHHHHHHHHHhcC
Q psy8160 54 HLRLGLMFKVNNEYDSALKHLTLCL-IDASPCT-----------------FTKLEGLMFKVNNEYDSALKHLTLCLIDAS 115 (324)
Q Consensus 54 ~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~-----------------~~~~la~~~~~~~~~~~A~~~~~~~l~~~~ 115 (324)
.+..|..+...|+|++|++.|.+++ .+|.... +...+|.+|..+|++++|++.+++++...+
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555 4443322 123345555555555555555555544332
Q ss_pred CCcc--cHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC--CCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHH
Q psy8160 116 PCTF--TKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDL--PVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQ 191 (324)
Q Consensus 116 ~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~ 191 (324)
.... ....+...+|.++...|++++|+..+++++..... .....+.++..+|.++.. .|++++|+.+++
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-------~g~~~~A~~~l~ 159 (434)
T 4b4t_Q 87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQ-------KKQYKDSLALIN 159 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHH-------HTCHHHHHHHHH
T ss_pred HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH-------ccChHHHHHHHH
Confidence 2211 11123444455555555555555555555543200 111124455555555544 335555555555
Q ss_pred HHhhh------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC---C----HHHHHHhHHHHhhcCCCHHHHHHH
Q psy8160 192 KSIEA------DPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEG---N----ADTWCSIGNKDFSNNSNREDYHQA 258 (324)
Q Consensus 192 ~al~~------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~----~~~~~~lg~~~~~~~~~~~~A~~~ 258 (324)
+++.. .|....++..+|.+|...|++++|...+++++...+. . ...+..+|.++...++ +.+|..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-y~~A~~~ 238 (434)
T 4b4t_Q 160 DLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKD-YKTAFSY 238 (434)
T ss_dssp HHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSC-HHHHHHH
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHh-HHHHHHH
Confidence 55432 1222345555566666666666666665555543221 1 2334455555555555 5555555
Q ss_pred H
Q psy8160 259 L 259 (324)
Q Consensus 259 ~ 259 (324)
|
T Consensus 239 ~ 239 (434)
T 4b4t_Q 239 F 239 (434)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.55 E-value=5.9e-15 Score=132.03 Aligned_cols=140 Identities=16% Similarity=0.057 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHH
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQ 202 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 202 (324)
..+..+|.++...|++++|+..|+++++.+ |.+ +.++..+|.++.. .+++++|+..++++++++|.++.
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~--p~~--~~~~~~lg~~~~~-------~g~~~~A~~~~~~al~l~p~~~~ 75 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIELN--PSN--AIYYGNRSLAYLR-------TECYGYALGDATRAIELDKKYIK 75 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--Ccc--HHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHhCCCCHH
Confidence 445667788888899999999999999988 877 5589999999877 45899999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHH--HhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchH
Q psy8160 203 SLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNK--DFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNN 280 (324)
Q Consensus 203 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~--~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A 280 (324)
+++.+|.++..+|++++|+..|+++++++|+++.++..++.+ +...|+ +++ |
T Consensus 76 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~------------------------~~~--A 129 (477)
T 1wao_1 76 GYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA------------------------FER--A 129 (477)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHH------------------------HCC--C
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH------------------------HHH--H
Confidence 999999999999999999999999999999988888887776 555455 566 7
Q ss_pred HHHHH-----------HhhhcCCChhhhhh
Q psy8160 281 RQCYN-----------SYSTSIASCKHINN 299 (324)
Q Consensus 281 ~~~~~-----------~al~~~p~~~~~~~ 299 (324)
++.++ ++++++|+......
T Consensus 130 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~~ 159 (477)
T 1wao_1 130 IAGDEHKRSVVDSLDIESMTIEDEYSGPKL 159 (477)
T ss_dssp ------CCSTTTCCTTSSCCCCTTCCSCCC
T ss_pred hccccccchhHhhhhhhhcccccccccccc
Confidence 77777 78888887655443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.55 E-value=4.2e-13 Score=111.27 Aligned_cols=191 Identities=13% Similarity=-0.043 Sum_probs=150.8
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCC--CCchhhHHHHHHHHhcccHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDA--SPCTFTKLEGLMFKVNNEYDSALKHL 107 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~--~~~~~~~~la~~~~~~~~~~~A~~~~ 107 (324)
..|++.|++.++..+. ...+++.+|.++...|++++|++++.+.+ .+| .+..+....+.++...|+.+.|.+.+
T Consensus 83 ~~a~~~l~~l~~~~~~---~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l 159 (310)
T 3mv2_B 83 TKNIEELENLLKDKQN---SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIF 159 (310)
T ss_dssp TTCCHHHHHTTTTSCC---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHhcCCC---CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5588889888876532 24457899999999999999999999999 776 88888899999999999999999999
Q ss_pred HHHHHhcCCCcccHHHHHHHHH--HHHHHhh--cHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhH
Q psy8160 108 TLCLIDASPCTFTKLEVRFHIA--HLHEVQR--KYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRE 183 (324)
Q Consensus 108 ~~~l~~~~~~~~~~~~~~~~la--~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 183 (324)
+++....|+.......+..+++ ++....| ++.+|...|+++.... |+......+.+ ++.. .|++
T Consensus 160 ~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln---~~~~-------~g~~ 227 (310)
T 3mv2_B 160 DNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLN---LHLQ-------QRNI 227 (310)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHH---HHHH-------HTCH
T ss_pred HHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHH---HHHH-------cCCH
Confidence 9988776621111114555654 4455556 9999999999988777 65211223333 4544 4599
Q ss_pred HHHHHHHHHHhhh----------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q psy8160 184 TLAIHCLQKSIEA----------DPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTW 238 (324)
Q Consensus 184 ~~A~~~~~~al~~----------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 238 (324)
++|...++.+++. +|++++++.++..+....|+ +|.++++++.+.+|++|.+.
T Consensus 228 ~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 228 AEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 9999999988776 58899999999999999998 89999999999999998664
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.55 E-value=4.3e-15 Score=132.35 Aligned_cols=181 Identities=15% Similarity=0.121 Sum_probs=138.6
Q ss_pred HHHHHHHHH----HhccCCCcccchHHHHHHHHH------------HHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHH
Q psy8160 31 IKAIKTFQQ----LLYVDPSYLRANEVHLRLGLM------------FKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLM 93 (324)
Q Consensus 31 ~~A~~~~~~----~l~~~p~~~~~~~~~~~lg~~------------~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~ 93 (324)
+.|+..+.+ ++.++|.+. |...|.. ....+++++|+..|+.++ .+|.....+..+|..
T Consensus 203 e~al~~~~~ge~~~l~i~P~~a-----y~~~g~~~~~ip~~~~l~y~~~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~ 277 (457)
T 1kt0_A 203 DKALEKMQREEQCILYLGPRYG-----FGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTV 277 (457)
T ss_dssp HHHHTTCCBTCEEEEEECGGGT-----TCSSCBGGGTBCTTCCEEEEEEEEEEECCCCGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCEEEEEECcccc-----cCCCCCcccCCCCCCEEEEEhhhhhcccCcchhhcCHHHHHHHHHHHHHHHHH
Confidence 677777766 677776531 1111111 114456677777777777 777777788888888
Q ss_pred HHhcccHHHHHHHHHHHHHhcCCCc-----------ccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHH
Q psy8160 94 FKVNNEYDSALKHLTLCLIDASPCT-----------FTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADI 162 (324)
Q Consensus 94 ~~~~~~~~~A~~~~~~~l~~~~~~~-----------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 162 (324)
+...|+|++|+..|++++...|... .....+++++|.++..+|++++|+.+|++++.++ |++ ..+
T Consensus 278 ~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~--~~a 353 (457)
T 1kt0_A 278 YFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD--SAN--EKG 353 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTC--HHH
T ss_pred HHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--Ccc--HHH
Confidence 8888888888888888888776652 0124789999999999999999999999999999 888 459
Q ss_pred HHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHH-HHHH
Q psy8160 163 CRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLA-YRNS 227 (324)
Q Consensus 163 ~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~-~~~a 227 (324)
++++|.++.. .+++++|+.+|+++++++|.+..++..++.++...+++++|... |.+.
T Consensus 354 ~~~~g~a~~~-------~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 354 LYRRGEAQLL-------MNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HHHHHHHHHH-------TTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH-------ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999977 55999999999999999999999999999999999999887753 4443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=2e-13 Score=101.64 Aligned_cols=119 Identities=18% Similarity=0.080 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCch-hhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCc
Q psy8160 121 KLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHL-KADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPK 199 (324)
Q Consensus 121 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 199 (324)
....++.+|..+...|++++|+..|++++..+ |++. ...++..+|.++.. .+++++|+..++++++.+|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~-------~~~~~~A~~~~~~~~~~~~~ 97 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLK-------LEDYDKAETEASKAIEKDGG 97 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHH-------HccHHHHHHHHHHHHhhCcc
Confidence 35789999999999999999999999999988 7641 14589999999977 55999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhc
Q psy8160 200 SGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSN 248 (324)
Q Consensus 200 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 248 (324)
++.+++.+|.++...|++++|+..|++++.++|+++.++..++.+....
T Consensus 98 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 146 (148)
T 2dba_A 98 DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGPS 146 (148)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCSC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999998876543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-13 Score=104.72 Aligned_cols=115 Identities=14% Similarity=0.120 Sum_probs=104.0
Q ss_pred ccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHH
Q psy8160 48 LRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRF 126 (324)
Q Consensus 48 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 126 (324)
+...+.++.+|.+++..|++++|+.+|++++ .+|.+..++..+|.++...|++++|+..|++++...|... .+++
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~ 83 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYS----KAWS 83 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH----HHHH
Confidence 3456789999999999999999999999999 9999999999999999999999999999999999988875 8999
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHH
Q psy8160 127 HIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMY 170 (324)
Q Consensus 127 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~ 170 (324)
.+|.++...|++++|+..|++++..+ |++.. ++...+...
T Consensus 84 ~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~--~~~~~~l~~ 123 (164)
T 3sz7_A 84 RLGLARFDMADYKGAKEAYEKGIEAE--GNGGS--DAMKRGLET 123 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH--SSSCC--HHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC--CCchH--HHHHHHHHH
Confidence 99999999999999999999999999 87744 555555444
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-13 Score=100.87 Aligned_cols=115 Identities=17% Similarity=0.142 Sum_probs=66.6
Q ss_pred ccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHH
Q psy8160 48 LRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRF 126 (324)
Q Consensus 48 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 126 (324)
+.....++.+|.++...|++++|+..|++++ .+|.+..++..+|.++...|++++|+..+++++...|... .+++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~ 88 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFI----KGYT 88 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCH----HHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCch----HHHH
Confidence 4456678888888888888888888888777 6666655555555555555555555555555554444332 4445
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHH
Q psy8160 127 HIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMY 170 (324)
Q Consensus 127 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~ 170 (324)
.+|.++...|++++|+..|++++..+ |.+ ..++..++.++
T Consensus 89 ~la~~~~~~~~~~~A~~~~~~~~~~~--p~~--~~~~~~l~~~~ 128 (133)
T 2lni_A 89 RKAAALEAMKDYTKAMDVYQKALDLD--SSC--KEAADGYQRCM 128 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--GGG--THHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhC--CCc--hHHHHHHHHHH
Confidence 55555555555555555555555444 433 22444444444
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.9e-13 Score=99.43 Aligned_cols=118 Identities=16% Similarity=0.134 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchh-hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc-
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK-ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS- 200 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~- 200 (324)
+.++.+|.++...|++++|+..|++++..+ |++.. ..+++.+|.++.. .+++++|+..|++++..+|++
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~-------~~~~~~A~~~~~~~~~~~p~~~ 73 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYA-------TRNFQLAEAQFRDLVSRYPTHD 73 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHH-------hccHHHHHHHHHHHHHHCCCCc
Confidence 357889999999999999999999999988 76631 3589999999977 559999999999999999999
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcC
Q psy8160 201 --GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNN 249 (324)
Q Consensus 201 --~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 249 (324)
+.+++.+|.++...|++++|+..|++++...|+++.+...+..+-...+
T Consensus 74 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~ 124 (129)
T 2xev_A 74 KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL 124 (129)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence 8899999999999999999999999999999999888777666554443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=9.9e-14 Score=100.77 Aligned_cols=119 Identities=13% Similarity=0.115 Sum_probs=74.8
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHI 128 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~l 128 (324)
...+++.+|.++...|++++|+..|++++ .+|.+. .++..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------------------------------~~~~~~ 52 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANA--------------------------------------VYFCNR 52 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--------------------------------------HHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH--------------------------------------HHHHHH
Confidence 44566777777777777777777777665 555443 455566
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHH
Q psy8160 129 AHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLG 208 (324)
Q Consensus 129 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg 208 (324)
|.++...|++++|+..+++++... |++ ..++..+|.++.. .+++++|+.+++++++.+|.++.++..+|
T Consensus 53 a~~~~~~~~~~~A~~~~~~~~~~~--~~~--~~~~~~~~~~~~~-------~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 121 (131)
T 2vyi_A 53 AAAYSKLGNYAGAVQDCERAICID--PAY--SKAYGRMGLALSS-------LNKHVEAVAYYKKALELDPDNETYKSNLK 121 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHhhchHHHHHHHHHHHhcC--ccC--HHHHHHHHHHHHH-------hCCHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 666666666666666666666665 554 3366666666654 33666666666666666666666666666
Q ss_pred HHHHHcCCH
Q psy8160 209 RCFAAVGKV 217 (324)
Q Consensus 209 ~~~~~~~~~ 217 (324)
.++...|++
T Consensus 122 ~~~~~~~~~ 130 (131)
T 2vyi_A 122 IAELKLREA 130 (131)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHhcC
Confidence 666666553
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.9e-13 Score=105.77 Aligned_cols=165 Identities=10% Similarity=0.044 Sum_probs=121.8
Q ss_pred HHhccHHHHHHHHHHHhcCC-CCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCC--CcccHHHHHHHHHHHHHHhhcH
Q psy8160 62 KVNNEYDSALKHLTLCLIDA-SPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASP--CTFTKLEVRFHIAHLHEVQRKY 138 (324)
Q Consensus 62 ~~~~~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~~~~~la~~~~~~~~~ 138 (324)
+..|++++|.+.++.+..+| ....++..+|.++...|++++|+.++++++..... .......++..+|.++...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45677888887555545343 55666677788888888888888888888764222 2224457899999999999999
Q ss_pred HHHHHHHHHHHhcCC-CCCc--hhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCc--c----HHHHHHHHH
Q psy8160 139 KTAKDSYEQLLKEDD-LPVH--LKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPK--S----GQSLYLLGR 209 (324)
Q Consensus 139 ~~A~~~~~~al~~~~-~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--~----~~~~~~lg~ 209 (324)
++|+..+++++.... .++. ..+.++..+|.++.. .|++++|+.++++++...+. + ..++..+|.
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~-------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 155 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALH-------FGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGD 155 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHH-------hCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 999999999998721 1322 236688999999977 45999999999999875422 1 245689999
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCC
Q psy8160 210 CFAAVGKVHDAFLAYRNSVEKSEG 233 (324)
Q Consensus 210 ~~~~~~~~~~A~~~~~~al~~~p~ 233 (324)
++...|++++|+..+++++.+...
T Consensus 156 ~~~~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 156 LAQQEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.5e-14 Score=122.36 Aligned_cols=141 Identities=11% Similarity=0.059 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchh---------------hHHHHHHHHHHHhhhhhcccchhHHHH
Q psy8160 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK---------------ADICRQLGWMYHCIDTLGEKSHRETLA 186 (324)
Q Consensus 122 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~~~~~~~~A 186 (324)
+..+..+|..+...|++++|+..|++++... |.+.. ..++.++|.++.. .+++++|
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~-------~g~~~~A 249 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIK-------LKRYDEA 249 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHT-------TTCCHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHH-------cCCHHHH
Confidence 3567788888888888888888888888877 65420 1267777777765 4477778
Q ss_pred HHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhH
Q psy8160 187 IHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLG 266 (324)
Q Consensus 187 ~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg 266 (324)
+.+++++++.+|.++.+|+.+|.++..+|++++|+..|++++.++|+++.++..++.+.....
T Consensus 250 ~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~----------------- 312 (338)
T 2if4_A 250 IGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEK----------------- 312 (338)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-----------------
Confidence 888888888888778888888888888888888888888888888877777777766644333
Q ss_pred HHHHHcCCCCcchHHHHHHHhhhcCCChhh
Q psy8160 267 DFLVINNIPTSNNNRQCYNSYSTSIASCKH 296 (324)
Q Consensus 267 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 296 (324)
+..+. +...|.+++...|+++.
T Consensus 313 ------~~~~~--a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 313 ------ALYQK--QKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ------------------------------
T ss_pred ------HHHHH--HHHHHHHhhCCCCCCCC
Confidence 24567 88889999999998764
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.5e-13 Score=118.76 Aligned_cols=124 Identities=14% Similarity=0.159 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHh----------------cCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHH
Q psy8160 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLK----------------EDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETL 185 (324)
Q Consensus 122 ~~~~~~la~~~~~~~~~~~A~~~~~~al~----------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 185 (324)
...+..+|..+...|++++|+..|++++. .+ |.. ..++.++|.++.. .+++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~--~~~--~~~~~nla~~~~~-------~g~~~~ 291 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ--PVA--LSCVLNIGACKLK-------MSDWQG 291 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH--HHH--HHHHHHHHHHHHH-------TTCHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH--HHH--HHHHHHHHHHHHh-------ccCHHH
Confidence 35688889999999999999999999998 33 433 5699999999977 559999
Q ss_pred HHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHH
Q psy8160 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQ 257 (324)
Q Consensus 186 A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~ 257 (324)
|+.+++++++++|.++.+++.+|.++..+|++++|+..|+++++++|+++.++..++.++...++ ++++.+
T Consensus 292 A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~-~~~a~k 362 (370)
T 1ihg_A 292 AVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA-QKDKEK 362 (370)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH-HHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998 887754
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.52 E-value=7.2e-14 Score=102.87 Aligned_cols=105 Identities=11% Similarity=-0.039 Sum_probs=85.6
Q ss_pred hhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH-----------HHHH
Q psy8160 195 EADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL-----------NKYR 263 (324)
Q Consensus 195 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-----------~~~~ 263 (324)
..+|.++..++.+|.+++..|++++|+..|++++..+|+++.+|..+|.++...|+ +++|+..| .+|+
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~ 81 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ-PEQALADCRRALELDGQSVKAHF 81 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCchhHHHHH
Confidence 34567788888888888888888888888888888888888888888888888888 88888887 7788
Q ss_pred hhHHHHHHcCCCCcchHHHHHHHhhhcCCC-----hhhhhhchh
Q psy8160 264 DLGDFLVINNIPTSNNNRQCYNSYSTSIAS-----CKHINNNKD 302 (324)
Q Consensus 264 ~lg~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~l~ 302 (324)
.+|.++...|++++ |+..|+++++++|+ ++.+...+.
T Consensus 82 ~l~~~~~~~~~~~~--A~~~~~~a~~~~p~~~~~~~~~~~~~l~ 123 (137)
T 3q49_B 82 FLGQCQLEMESYDE--AIANLQRAYSLAKEQRLNFGDDIPSALR 123 (137)
T ss_dssp HHHHHHHHTTCHHH--HHHHHHHHHHHHHHTTCCCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHH--HHHHHHHHHHHChhHHHHHHHHHHHHHH
Confidence 88888888888999 99999999999998 444444443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.8e-13 Score=107.73 Aligned_cols=153 Identities=15% Similarity=0.184 Sum_probs=107.0
Q ss_pred HhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCC--CchhhHHHHHHHHHHHh
Q psy8160 95 KVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLP--VHLKADICRQLGWMYHC 172 (324)
Q Consensus 95 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~l~~~~~~ 172 (324)
...|++++|++.++.+.. .| .....++..+|.++...|++++|+..+++++...... ....+.++..+|.++..
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 78 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HP---ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERM 78 (203)
T ss_dssp ----CHHHHHHHHHHHHT-ST---TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhcC-Ch---HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 457899999998776643 22 2457889999999999999999999999998753211 11237788888988876
Q ss_pred hhhhcccchhHHHHHHHHHHHhhh---CC----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC------HHHHH
Q psy8160 173 IDTLGEKSHRETLAIHCLQKSIEA---DP----KSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN------ADTWC 239 (324)
Q Consensus 173 ~~~~~~~~~~~~~A~~~~~~al~~---~~----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~ 239 (324)
.|++++|+.+++++++. .+ ....++..+|.++...|++++|+..+++++.+.+.. ..++.
T Consensus 79 -------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 151 (203)
T 3gw4_A 79 -------AGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFR 151 (203)
T ss_dssp -------TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -------cCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 66999999999999887 33 234678899999999999999999999998753321 12234
Q ss_pred HhHHHHhhcCCCHHHHHHHH
Q psy8160 240 SIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 240 ~lg~~~~~~~~~~~~A~~~~ 259 (324)
.+|.++...|+ +++|+.++
T Consensus 152 ~la~~~~~~g~-~~~A~~~~ 170 (203)
T 3gw4_A 152 GLGDLAQQEKN-LLEAQQHW 170 (203)
T ss_dssp HHHHHHHHTTC-HHHHHHHH
T ss_pred HHHHHHHHCcC-HHHHHHHH
Confidence 45555555555 44444443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-13 Score=102.43 Aligned_cols=107 Identities=15% Similarity=0.260 Sum_probs=90.3
Q ss_pred HHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhc---ccchhHHHHHHHHHHHhhhCCccHHHHHHHHH
Q psy8160 133 EVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLG---EKSHRETLAIHCLQKSIEADPKSGQSLYLLGR 209 (324)
Q Consensus 133 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~ 209 (324)
.+.+.+++|+..++++++++ |++ ++++.++|.++....... ...+.+++|+..|+++++++|++.++|+++|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~--P~~--aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ 88 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN--PLD--ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC--CCC--HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 56788999999999999999 988 559999999886633211 01235789999999999999999999999999
Q ss_pred HHHHcC-----------CHHHHHHHHHHHHccCCCCHHHHHHhHH
Q psy8160 210 CFAAVG-----------KVHDAFLAYRNSVEKSEGNADTWCSIGN 243 (324)
Q Consensus 210 ~~~~~~-----------~~~~A~~~~~~al~~~p~~~~~~~~lg~ 243 (324)
+|...| ++++|+.+|++|++++|+++..+..+..
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 999875 8999999999999999999877666543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.50 E-value=3.4e-13 Score=97.97 Aligned_cols=117 Identities=14% Similarity=0.145 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc-
Q psy8160 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS- 200 (324)
Q Consensus 122 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~- 200 (324)
+..++.+|.++...|++++|+..|++++..+ |.+ ..++..+|.++.. .+++++|+.++++++...|.+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~--~~~~~~la~~~~~-------~~~~~~A~~~~~~~~~~~~~~~ 72 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD--PTN--MTYITNQAAVYFE-------KGDYNKCRELCEKAIEVGRENR 72 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--Ccc--HHHHHHHHHHHHH-------hccHHHHHHHHHHHHhhccccc
Confidence 4678999999999999999999999999998 877 4599999999977 459999999999999998877
Q ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCC
Q psy8160 201 ------GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNS 250 (324)
Q Consensus 201 ------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 250 (324)
+.+++.+|.++...|++++|+..|++++...| ++..+..++.+....++
T Consensus 73 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 73 EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999 68999999888766543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.9e-14 Score=121.12 Aligned_cols=155 Identities=12% Similarity=0.080 Sum_probs=94.5
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHI 128 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~l 128 (324)
....++.+|..++..|+|++|+.+|++++ .+|.+. .+...|++.++...+. ..+++++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~--------~~~~~~~~~~~~~~l~-------------~~~~~nl 236 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF--------MFQLYGKYQDMALAVK-------------NPCHLNI 236 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH--------HHTCCHHHHHHHHHHH-------------THHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch--------hhhhcccHHHHHHHHH-------------HHHHHHH
Confidence 34578899999999999999999999999 887654 2334555666554321 1478999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHH
Q psy8160 129 AHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLG 208 (324)
Q Consensus 129 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg 208 (324)
|.++...|++++|+..|++++..+ |++ ..+++++|.++.. .+++++|+.+|+++++++|.++.++..++
T Consensus 237 a~~~~~~g~~~~A~~~~~~al~~~--p~~--~~a~~~lg~a~~~-------~g~~~~A~~~l~~al~l~p~~~~a~~~L~ 305 (338)
T 2if4_A 237 AACLIKLKRYDEAIGHCNIVLTEE--EKN--PKALFRRGKAKAE-------LGQMDSARDDFRKAQKYAPDDKAIRRELR 305 (338)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHT-------TTCHHHHHHHHHHTTC-------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCC--HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 999999999999999999999999 887 4599999999977 55999999999999999999999999999
Q ss_pred HH-HHHcCCHHHHHHHHHHHHccCCCCHH
Q psy8160 209 RC-FAAVGKVHDAFLAYRNSVEKSEGNAD 236 (324)
Q Consensus 209 ~~-~~~~~~~~~A~~~~~~al~~~p~~~~ 236 (324)
.+ ....+..+++...|.+++...|+++.
T Consensus 306 ~l~~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 306 ALAEQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 88 44567788899999999999998764
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.6e-12 Score=93.48 Aligned_cols=114 Identities=25% Similarity=0.351 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Q psy8160 51 NEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIA 129 (324)
Q Consensus 51 ~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la 129 (324)
..+++.+|.++...|++++|++.|++++ .+|.+.. +++.+|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------------------------------------~~~~la 50 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE--------------------------------------AWYNLG 50 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------------------------------HHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHH--------------------------------------HHHHHH
Confidence 4567777777777777777777777666 5555444 444555
Q ss_pred HHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHH
Q psy8160 130 HLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGR 209 (324)
Q Consensus 130 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~ 209 (324)
.++...|++++|+..|++++... |.+ ..++..+|.++.. .+++++|+..++++++.+|.++.++..+|.
T Consensus 51 ~~~~~~~~~~~A~~~~~~~~~~~--~~~--~~~~~~la~~~~~-------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 119 (125)
T 1na0_A 51 NAYYKQGDYDEAIEYYQKALELD--PNN--AEAWYNLGNAYYK-------QGDYDEAIEYYQKALELDPNNAEAKQNLGN 119 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC--Ccc--HHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 55555555555555555555554 444 2255555555544 235555555555555555555555555555
Q ss_pred HHHH
Q psy8160 210 CFAA 213 (324)
Q Consensus 210 ~~~~ 213 (324)
++..
T Consensus 120 ~~~~ 123 (125)
T 1na0_A 120 AKQK 123 (125)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-12 Score=115.78 Aligned_cols=196 Identities=9% Similarity=-0.084 Sum_probs=155.4
Q ss_pred hhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcc-------------cHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC
Q psy8160 86 FTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTF-------------TKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKED 152 (324)
Q Consensus 86 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~-------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 152 (324)
.....|.-+...|+|++|++.|.+++...+.... ....++..+|.+|...|++++|++.+.+++...
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~ 85 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM 85 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3445677888899999999999999987766432 123468899999999999999999999998765
Q ss_pred CCCCch--hhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCC------ccHHHHHHHHHHHHHcCCHHHHHHHH
Q psy8160 153 DLPVHL--KADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADP------KSGQSLYLLGRCFAAVGKVHDAFLAY 224 (324)
Q Consensus 153 ~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~lg~~~~~~~~~~~A~~~~ 224 (324)
+..... ...+...++.++.. .+++++|+.++++++...+ ....++..+|.++...|++++|+..+
T Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l 158 (434)
T 4b4t_Q 86 MQFAKSKTVKVLKTLIEKFEQV-------PDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALI 158 (434)
T ss_dssp HTSCHHHHHHHHHHHHHHHCSC-------CSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHccchHHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHH
Confidence 211111 12345556666533 4489999999999986532 33578899999999999999999999
Q ss_pred HHHHcc------CCCCHHHHHHhHHHHhhcCCCHHHHHHHH------------------HHHHhhHHHHHHcCCCCcchH
Q psy8160 225 RNSVEK------SEGNADTWCSIGNKDFSNNSNREDYHQAL------------------NKYRDLGDFLVINNIPTSNNN 280 (324)
Q Consensus 225 ~~al~~------~p~~~~~~~~lg~~~~~~~~~~~~A~~~~------------------~~~~~lg~~~~~~~~~~~~~A 280 (324)
++++.. .|...+++..+|.+|...|+ +++|...| ..+..+|.++...+++.+ |
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~--A 235 (434)
T 4b4t_Q 159 NDLLREFKKLDDKPSLVDVHLLESKVYHKLRN-LAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKT--A 235 (434)
T ss_dssp HHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHH--H
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHH--H
Confidence 999865 23346789999999999999 99999988 567788999999999999 9
Q ss_pred HHHHHHhhhcC
Q psy8160 281 RQCYNSYSTSI 291 (324)
Q Consensus 281 ~~~~~~al~~~ 291 (324)
..+|.++++..
T Consensus 236 ~~~~~~a~~~~ 246 (434)
T 4b4t_Q 236 FSYFFESFESY 246 (434)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998753
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.4e-13 Score=94.54 Aligned_cols=106 Identities=13% Similarity=0.141 Sum_probs=93.1
Q ss_pred CCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC-
Q psy8160 155 PVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEG- 233 (324)
Q Consensus 155 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~- 233 (324)
|++ +.++..+|.++.. .+++++|+.+++++++.+|.++.+++.+|.++...|++++|+..|++++..+|.
T Consensus 3 p~~--~~~~~~~~~~~~~-------~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~ 73 (112)
T 2kck_A 3 DQN--PEEYYLEGVLQYD-------AGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDE 73 (112)
T ss_dssp CSS--TTGGGGHHHHHHS-------SCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCT
T ss_pred CCc--HHHHHHHHHHHHH-------hhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccc
Confidence 555 4488999999976 559999999999999999999999999999999999999999999999999999
Q ss_pred -CHHHHHHhHHHHhhc-CCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChh
Q psy8160 234 -NADTWCSIGNKDFSN-NSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCK 295 (324)
Q Consensus 234 -~~~~~~~lg~~~~~~-~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (324)
++.+|..+|.++... |+ +++ |++++++++...|+++
T Consensus 74 ~~~~~~~~l~~~~~~~~~~------------------------~~~--A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 74 YNKDVWAAKADALRYIEGK------------------------EVE--AEIAEARAKLEHHHHH 111 (112)
T ss_dssp TCHHHHHHHHHHHTTCSSC------------------------SHH--HHHHHHHHGGGCCCCC
T ss_pred chHHHHHHHHHHHHHHhCC------------------------HHH--HHHHHHHHhhcccCCC
Confidence 999988888888888 87 566 7778888888877654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.9e-12 Score=92.07 Aligned_cols=112 Identities=15% Similarity=0.101 Sum_probs=101.9
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Q psy8160 51 NEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIA 129 (324)
Q Consensus 51 ~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la 129 (324)
.+.++.+|.++...|++++|+..|++++ .+|.+..++..+|.++...|++++|+..+++++...|... .++..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~a 79 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG----KGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccH----HHHHHHH
Confidence 4678999999999999999999999999 9999999999999999999999999999999999988765 8899999
Q ss_pred HHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHH
Q psy8160 130 HLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMY 170 (324)
Q Consensus 130 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~ 170 (324)
.++...|++++|+..|++++..+ |++ ..++..++.+.
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~--~~~--~~~~~~l~~~~ 116 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLKHE--ANN--PQLKEGLQNME 116 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC--TTC--HHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHcC--CCC--HHHHHHHHHhh
Confidence 99999999999999999999998 877 34777766654
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.7e-14 Score=101.77 Aligned_cols=94 Identities=13% Similarity=0.087 Sum_probs=80.6
Q ss_pred chhHHHHHHHHHHHhhh---CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHH
Q psy8160 180 SHRETLAIHCLQKSIEA---DPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYH 256 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~---~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~ 256 (324)
.|++++|+.+|+++++. +|.++.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~------ 76 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGR------ 76 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC------
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC------
Confidence 45899999999999999 688899999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhh
Q psy8160 257 QALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINN 299 (324)
Q Consensus 257 ~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 299 (324)
+++ |+..|+++++..|+++.+..
T Consensus 77 ------------------~~~--A~~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 77 ------------------YEQ--GVELLLKIIAETSDDETIQS 99 (117)
T ss_dssp ------------------HHH--HHHHHHHHHHHHCCCHHHHH
T ss_pred ------------------HHH--HHHHHHHHHHhCCCcHHHHH
Confidence 455 77778888888888776644
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.47 E-value=8.2e-14 Score=99.90 Aligned_cols=105 Identities=11% Similarity=0.026 Sum_probs=84.5
Q ss_pred HhhcHHHHHHHHHHHHhcCC-CCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHH
Q psy8160 134 VQRKYKTAKDSYEQLLKEDD-LPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFA 212 (324)
Q Consensus 134 ~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~ 212 (324)
..|++++|+..|++++.... .|.+ ..++..+|.++.. .+++++|+.+|+++++.+|+++.+++.+|.++.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~--~~~~~~lg~~~~~-------~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 72 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDL--AECYLGLGSTFRT-------LGEYRKAEAVLANGVKQFPNHQALRVFYAMVLY 72 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHH--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccH--HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 46889999999999998830 0544 5699999999977 559999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhh
Q psy8160 213 AVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFS 247 (324)
Q Consensus 213 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 247 (324)
..|++++|+..+++++...|+++........+...
T Consensus 73 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~~ 107 (117)
T 3k9i_A 73 NLGRYEQGVELLLKIIAETSDDETIQSYKQAILFY 107 (117)
T ss_dssp HHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 99999999999999999999998876554444433
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.5e-13 Score=99.73 Aligned_cols=107 Identities=9% Similarity=-0.057 Sum_probs=87.1
Q ss_pred hhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHhHHHHhhcCCCHHHHHHHH-----------H
Q psy8160 195 EADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN---ADTWCSIGNKDFSNNSNREDYHQAL-----------N 260 (324)
Q Consensus 195 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~~A~~~~-----------~ 260 (324)
...|.+...++.+|.++...|++++|+..|++++..+|++ +.+|..+|.++...|+ +++|+..| .
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~~~ 100 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLED-YDKAETEASKAIEKDGGDVK 100 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTSCCHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHcc-HHHHHHHHHHHHhhCccCHH
Confidence 3456677778888888888888888888888888888876 7778888888888888 88887777 6
Q ss_pred HHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhh
Q psy8160 261 KYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFS 304 (324)
Q Consensus 261 ~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 304 (324)
+|+.+|.++...|++++ |+..|+++++++|+++.++..+..+
T Consensus 101 ~~~~~a~~~~~~~~~~~--A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQ--AVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHHHHTCHHH--HHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHH--HHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 77888888888888999 9999999999999999888776654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.4e-14 Score=128.11 Aligned_cols=133 Identities=8% Similarity=0.011 Sum_probs=104.5
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHH
Q psy8160 90 EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWM 169 (324)
Q Consensus 90 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~ 169 (324)
+|..+...|++++|++.|++++...|... .++.++|.++..+|++++|+..|+++++.+ |.+ +.++..+|.+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~--~~~~~~lg~~ 83 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNA----IYYGNRSLAYLRTECYGYALGDATRAIELD--KKY--IKGYYRRAAS 83 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTC--HHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCC--HHHHHHHHHH
Confidence 45555666677777777777777766654 788899999999999999999999999988 877 4589999999
Q ss_pred HHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHccCCCCHH
Q psy8160 170 YHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRC--FAAVGKVHDAFLAYR-----------NSVEKSEGNAD 236 (324)
Q Consensus 170 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~--~~~~~~~~~A~~~~~-----------~al~~~p~~~~ 236 (324)
+.. .+++++|+..|+++++.+|+++.++..+|.+ +...|++++|+..++ +++.++|+...
T Consensus 84 ~~~-------~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~ 156 (477)
T 1wao_1 84 NMA-------LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSG 156 (477)
T ss_dssp HHH-------HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCS
T ss_pred HHH-------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccc
Confidence 876 4589999999999999999999999989888 888899999999999 88888877643
Q ss_pred H
Q psy8160 237 T 237 (324)
Q Consensus 237 ~ 237 (324)
.
T Consensus 157 ~ 157 (477)
T 1wao_1 157 P 157 (477)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.45 E-value=6.8e-13 Score=93.55 Aligned_cols=102 Identities=16% Similarity=0.127 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCc--c
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPK--S 200 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--~ 200 (324)
.+++.+|.++...|++++|+..|++++..+ |.+ ..++..+|.++.. .+++++|+.+++++++.+|. +
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~--~~~~~~~a~~~~~-------~~~~~~A~~~~~~a~~~~~~~~~ 75 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEE--SKYWLMKGKALYN-------LERYEEAVDCYNYVINVIEDEYN 75 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHTSCCTTC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCC--HHHHHHHHHHHHH-------ccCHHHHHHHHHHHHHhCcccch
Confidence 567778888888888888888888888887 766 4488888888866 44888888888888888888 8
Q ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHccCCCCH
Q psy8160 201 GQSLYLLGRCFAAV-GKVHDAFLAYRNSVEKSEGNA 235 (324)
Q Consensus 201 ~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~~ 235 (324)
+.+++.+|.++... |++++|+.++++++...|.++
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 76 KDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 88888888888888 888899999988888888653
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.9e-12 Score=93.10 Aligned_cols=103 Identities=11% Similarity=0.032 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCc---hhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q psy8160 53 VHLRLGLMFKVNNEYDSALKHLTLCL-IDASPC---TFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHI 128 (324)
Q Consensus 53 ~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~l 128 (324)
+++.+|.++...|++++|+..|++++ .+|++. .++..+|.++...|++++|+..|++++...|.+.. ...+++.+
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~~~~l 82 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDK-AAGGLLKL 82 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT-HHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcc-cHHHHHHH
Confidence 57899999999999999999999999 899988 68888999999999999999999999998887632 23789999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCCCch
Q psy8160 129 AHLHEVQRKYKTAKDSYEQLLKEDDLPVHL 158 (324)
Q Consensus 129 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 158 (324)
|.++...|++++|+..|++++... |++.
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~--p~~~ 110 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQY--PGSD 110 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--TTSH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--CCCh
Confidence 999999999999999999999998 8763
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-11 Score=113.58 Aligned_cols=225 Identities=11% Similarity=0.031 Sum_probs=175.1
Q ss_pred HHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHH-HHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHH
Q psy8160 33 AIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSAL-KHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLC 110 (324)
Q Consensus 33 A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~-~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 110 (324)
....|++++...|. .+++|+..+......|+.++|. ..|.+++ ..|.+...+...+.+....|+++.|.+.|+++
T Consensus 328 v~~~Ye~aL~~~p~---~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 328 MTYVYMQAAQHVCF---APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHTTT---CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 45789999999986 4568999999999999999997 9999999 99999888888999999999999999999999
Q ss_pred HHhc-----------CCCc-------ccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc-CCCCCchhhHHHHHHHHHHH
Q psy8160 111 LIDA-----------SPCT-------FTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKE-DDLPVHLKADICRQLGWMYH 171 (324)
Q Consensus 111 l~~~-----------~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~l~~~~~ 171 (324)
+... |.+. .....+|...+.+....|+.+.|...|.++++. . +.. ..++...+.+..
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~--~~~--~~lyi~~A~lE~ 480 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK--LVT--PDIYLENAYIEY 480 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG--GSC--THHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC--CCC--hHHHHHHHHHHH
Confidence 8752 2210 012347888888888899999999999999987 3 222 235655555554
Q ss_pred hhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC---CHHHHHHhHHHHhhc
Q psy8160 172 CIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEG---NADTWCSIGNKDFSN 248 (324)
Q Consensus 172 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~ 248 (324)
.. .++.+.|...|+++++..|+++..|...+......|+.+.|...|++++...|+ ....|......-...
T Consensus 481 ~~------~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~ 554 (679)
T 4e6h_A 481 HI------SKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKV 554 (679)
T ss_dssp TT------TSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHT
T ss_pred Hh------CCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc
Confidence 31 125889999999999999999999999999888999999999999999998884 344555554444444
Q ss_pred CCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhh
Q psy8160 249 NSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKH 296 (324)
Q Consensus 249 ~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 296 (324)
|+ .+. +.+.++++.+..|+++.
T Consensus 555 G~------------------------~~~--~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 555 GS------------------------LNS--VRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp CC------------------------SHH--HHHHHHHHHHHSTTCCH
T ss_pred CC------------------------HHH--HHHHHHHHHHhCCCCcH
Confidence 44 555 66666666666666543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=2e-12 Score=97.42 Aligned_cols=144 Identities=17% Similarity=0.168 Sum_probs=104.0
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Q psy8160 51 NEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIA 129 (324)
Q Consensus 51 ~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la 129 (324)
..++..+|.++...|++++|+.++++++ ..+.. ........++..+|
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--------------------------------~~~~~~~~~~~~l~ 56 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--------------------------------GDKAAERIAYSNLG 56 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--------------------------------TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh--------------------------------CCchHHHHHHHHHH
Confidence 4567777888888888888888777655 22110 11112235788889
Q ss_pred HHHHHhhcHHHHHHHHHHHHhcCCCCC--chhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCC------ccH
Q psy8160 130 HLHEVQRKYKTAKDSYEQLLKEDDLPV--HLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADP------KSG 201 (324)
Q Consensus 130 ~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~------~~~ 201 (324)
.++...|++++|+..+++++......+ ...+.++..+|.++.. .+++++|+.+++++++..+ ...
T Consensus 57 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 129 (164)
T 3ro3_A 57 NAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL-------LQDYEKAIDYHLKHLAIAQELKDRIGEG 129 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH-------HhhHHHHHHHHHHHHHHHHHccchHhHH
Confidence 999999999999999998887641111 1125578888888866 4589999999999887632 224
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEG 233 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 233 (324)
.++..+|.++...|++++|+..+++++++.+.
T Consensus 130 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 130 RACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999887554
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.8e-12 Score=97.62 Aligned_cols=124 Identities=13% Similarity=0.030 Sum_probs=108.9
Q ss_pred hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH------HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q psy8160 160 ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG------QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEG 233 (324)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 233 (324)
+.++..+|.++.. .+++++|+.+++++++..+... .++..+|.++...|++++|+..+++++...+.
T Consensus 9 ~~~~~~l~~~~~~-------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 81 (164)
T 3ro3_A 9 GRAFGNLGNTHYL-------LGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 81 (164)
T ss_dssp HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 6688999999977 5599999999999998765433 58899999999999999999999999987654
Q ss_pred C------HHHHHHhHHHHhhcCCCHHHHHHHH-----------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhc
Q psy8160 234 N------ADTWCSIGNKDFSNNSNREDYHQAL-----------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTS 290 (324)
Q Consensus 234 ~------~~~~~~lg~~~~~~~~~~~~A~~~~-----------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~ 290 (324)
. ..++..+|.++...|+ +++|+..+ .++..+|.++...|++++ |+.++++++++
T Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~--A~~~~~~a~~~ 158 (164)
T 3ro3_A 82 LKDRAVEAQSCYSLGNTYTLLQD-YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQ--AMHFAEKHLEI 158 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH--HHHHHHHHHHH
T ss_pred hCCcHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHH--HHHHHHHHHHH
Confidence 3 5678999999999999 99999988 567899999999999999 99999999987
Q ss_pred CCC
Q psy8160 291 IAS 293 (324)
Q Consensus 291 ~p~ 293 (324)
.+.
T Consensus 159 ~~~ 161 (164)
T 3ro3_A 159 SRE 161 (164)
T ss_dssp HTT
T ss_pred HHH
Confidence 654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.39 E-value=8e-12 Score=90.56 Aligned_cols=118 Identities=16% Similarity=0.155 Sum_probs=101.9
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCccc---HHHHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFT---KLEVR 125 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~---~~~~~ 125 (324)
.+++++.+|.++...|++++|+.+|++++ .+|.+..++..+|.++...|++++|+..+++++...|..... ...++
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 45689999999999999999999999999 999999999999999999999999999999999887654221 25789
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHh
Q psy8160 126 FHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHC 172 (324)
Q Consensus 126 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~ 172 (324)
+.+|.++...|++++|+..|++++... |+ ......++.+...
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~--~~---~~~~~~l~~~~~~ 124 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEH--RT---PDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC--CC---HHHHHHHHHHHHH
Confidence 999999999999999999999999988 63 3366666666533
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.35 E-value=7.9e-12 Score=108.01 Aligned_cols=139 Identities=17% Similarity=0.079 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Q psy8160 52 EVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAH 130 (324)
Q Consensus 52 ~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~ 130 (324)
..+..+|..++..|++++|+..|++++ ..+... +....++.....| ....++.++|.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~------------------~~~~~~~~~~~~~----~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR------------------AAAEDADGAKLQP----VALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH------------------HHSCHHHHGGGHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc------------------cccChHHHHHHHH----HHHHHHHHHHH
Confidence 346667777777777777777777655 221110 0000111111222 23478999999
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHH
Q psy8160 131 LHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRC 210 (324)
Q Consensus 131 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~ 210 (324)
++..+|++++|+.++++++..+ |++ +.+++.+|.++.. .+++++|+..|+++++++|.++.++..++.+
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~--p~~--~~a~~~lg~~~~~-------~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~ 350 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEID--PSN--TKALYRRAQGWQG-------LKEYDQALADLKKAQEIAPEDKAIQAELLKV 350 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC--TTC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhC--chh--HHHHHHHHHHHHH-------ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999999999999 887 5599999999977 5599999999999999999999999999999
Q ss_pred HHHcCCHHHHHHH
Q psy8160 211 FAAVGKVHDAFLA 223 (324)
Q Consensus 211 ~~~~~~~~~A~~~ 223 (324)
+...++++++...
T Consensus 351 ~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 351 KQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 9999988877653
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.7e-12 Score=91.67 Aligned_cols=84 Identities=12% Similarity=0.100 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-----
Q psy8160 160 ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN----- 234 (324)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----- 234 (324)
+.++..+|.++.. .+++++|+..|+++++.+|.++.+++.+|.++...|++++|+..|++++.++|++
T Consensus 4 ~~~~~~~g~~~~~-------~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 76 (111)
T 2l6j_A 4 FEKQKEQGNSLFK-------QGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAI 76 (111)
T ss_dssp HHHHHHHHHHHHT-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHH
T ss_pred HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHH
Confidence 5588999999977 5599999999999999999999999999999999999999999999999999998
Q ss_pred -HHHHHHhHHHHhhcCC
Q psy8160 235 -ADTWCSIGNKDFSNNS 250 (324)
Q Consensus 235 -~~~~~~lg~~~~~~~~ 250 (324)
+.+++.+|.++...|+
T Consensus 77 ~~~~~~~~~~~~~~~~~ 93 (111)
T 2l6j_A 77 RSKLQYRLELAQGAVGS 93 (111)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 6666666666666665
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.30 E-value=3.2e-11 Score=81.64 Aligned_cols=83 Identities=27% Similarity=0.384 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHH
Q psy8160 160 ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWC 239 (324)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 239 (324)
+.+++.+|.++.. .+++++|+.+++++++.+|.++.+++.+|.++...|++++|+..|++++.++|+++.++.
T Consensus 9 ~~~~~~la~~~~~-------~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 81 (91)
T 1na3_A 9 AEAWYNLGNAYYK-------QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQ 81 (91)
T ss_dssp HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHH-------ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHH
Confidence 5689999999977 559999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHhhcC
Q psy8160 240 SIGNKDFSNN 249 (324)
Q Consensus 240 ~lg~~~~~~~ 249 (324)
.+|.++...|
T Consensus 82 ~l~~~~~~~g 91 (91)
T 1na3_A 82 NLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 9999987654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.24 E-value=1e-10 Score=83.19 Aligned_cols=74 Identities=15% Similarity=0.196 Sum_probs=69.1
Q ss_pred HHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 185 LAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 185 ~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
+|+..|+++++.+|.++.+++.+|.++...|++++|+..|++++..+|+++.+|+.+|.++...|+ +++|+..|
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~ 76 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGD-RAGARQAW 76 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence 488999999999999999999999999999999999999999999999999999999999999999 77766665
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.23 E-value=5.8e-11 Score=84.48 Aligned_cols=100 Identities=14% Similarity=0.151 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHH
Q psy8160 139 KTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVH 218 (324)
Q Consensus 139 ~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~ 218 (324)
++|+..|++++..+ |++ +.+++.+|.++.. .+++++|+..|+++++.+|.++.+|+.+|.++...|+++
T Consensus 2 ~~a~~~~~~al~~~--p~~--~~~~~~lg~~~~~-------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 70 (115)
T 2kat_A 2 QAITERLEAMLAQG--TDN--MLLRFTLGKTYAE-------HEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRA 70 (115)
T ss_dssp CCHHHHHHHHHTTT--CCC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred hHHHHHHHHHHHhC--CCc--HHHHHHHHHHHHH-------ccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHH
Confidence 35788999999999 887 5599999999977 559999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCC--CHHHHHHhHHHHhhcC
Q psy8160 219 DAFLAYRNSVEKSEG--NADTWCSIGNKDFSNN 249 (324)
Q Consensus 219 ~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~ 249 (324)
+|+..|++++.++|. +......+...+...+
T Consensus 71 ~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~ 103 (115)
T 2kat_A 71 GARQAWESGLAAAQSRGDQQVVKELQVFLRRLA 103 (115)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHhc
Confidence 999999999999884 3445555555544443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.5e-11 Score=86.69 Aligned_cols=95 Identities=19% Similarity=0.144 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc-
Q psy8160 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS- 200 (324)
Q Consensus 122 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~- 200 (324)
.+.++.+|.++...|++++|+..|++++..+ |.+ +.++..+|.++.. .+++++|+..++++++.+|.+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~--~~~~~~lg~~~~~-------~g~~~~A~~~~~~al~~~p~~~ 72 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--PQN--PVGYSNKAMALIK-------LGEYTQAIQMCQQGLRYTSTAE 72 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHTSCSSTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCC--HHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHhCCCcc
Confidence 4788999999999999999999999999999 887 5599999999977 559999999999999999998
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy8160 201 -----GQSLYLLGRCFAAVGKVHDAFLAYRNS 227 (324)
Q Consensus 201 -----~~~~~~lg~~~~~~~~~~~A~~~~~~a 227 (324)
..+++.+|.++...|+++.|+..+++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 73 HVAIRSKLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp SHHHHHHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 889999999999999888887766543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.19 E-value=1.9e-09 Score=99.63 Aligned_cols=217 Identities=12% Similarity=-0.008 Sum_probs=169.1
Q ss_pred HHHHHhhhhccccccchhhhHhHHHHH--HHHH-HHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-c
Q psy8160 4 VIQKNLVEGIVTSVRVPKLQQFGKTLN--IKAI-KTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-I 79 (324)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~A~-~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~ 79 (324)
+.+..+..-+..|++|...+++....+ ++|. +.|.+++...|. ...+++..+.+....|+++.|.+.|++++ .
T Consensus 331 ~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~---s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~ 407 (679)
T 4e6h_A 331 VYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPN---SAVLAFSLSEQYELNTKIPEIETTILSCIDR 407 (679)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 455666666777777777777554444 7887 999999999985 45578899999999999999999999999 4
Q ss_pred -----------CCC-----------CchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhh-
Q psy8160 80 -----------DAS-----------PCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQR- 136 (324)
Q Consensus 80 -----------~~~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~- 136 (324)
.|. ...++...+.+....|+.+.|...|.+++...|... ..++...|.+-...+
T Consensus 408 l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~---~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 408 IHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT---PDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC---THHHHHHHHHHHTTTS
T ss_pred HHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHhCC
Confidence 143 334677778888888999999999999998723222 156666676666654
Q ss_pred cHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCC---ccHHHHHHHHHHHHH
Q psy8160 137 KYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADP---KSGQSLYLLGRCFAA 213 (324)
Q Consensus 137 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~lg~~~~~ 213 (324)
+.+.|...|+.+++.. |++. ..+...+..... .++.+.|...|++++...| .....|......-..
T Consensus 485 d~e~Ar~ife~~Lk~~--p~~~--~~w~~y~~fe~~-------~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~ 553 (679)
T 4e6h_A 485 DTKTACKVLELGLKYF--ATDG--EYINKYLDFLIY-------VNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESK 553 (679)
T ss_dssp CCHHHHHHHHHHHHHH--TTCH--HHHHHHHHHHHH-------HTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHC--CCch--HHHHHHHHHHHh-------CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 5899999999999998 7763 366555555433 3489999999999999888 456788888888888
Q ss_pred cCCHHHHHHHHHHHHccCCCCHHH
Q psy8160 214 VGKVHDAFLAYRNSVEKSEGNADT 237 (324)
Q Consensus 214 ~~~~~~A~~~~~~al~~~p~~~~~ 237 (324)
.|+.+.+.....++.+..|+++..
T Consensus 554 ~G~~~~~~~v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 554 VGSLNSVRTLEKRFFEKFPEVNKL 577 (679)
T ss_dssp TCCSHHHHHHHHHHHHHSTTCCHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCcHH
Confidence 999999999999999999987544
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=99.14 E-value=3.2e-10 Score=78.50 Aligned_cols=63 Identities=16% Similarity=0.204 Sum_probs=57.7
Q ss_pred hCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 196 ADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 196 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
.+|+++.+|+.+|.++...|++++|+..|+++++++|+++.+|+.+|.+|...|+ +++|+..|
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~~A~~~~ 64 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDR-TDDAIDTY 64 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence 4799999999999999999999999999999999999999999999999999999 88887776
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=2.4e-09 Score=78.83 Aligned_cols=93 Identities=18% Similarity=0.284 Sum_probs=64.0
Q ss_pred hcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHH--
Q psy8160 136 RKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAA-- 213 (324)
Q Consensus 136 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~-- 213 (324)
+++++|+..|+++.+.. +.. +. +|.+|.. ....++|+.+|+++.+. .++.+++.||.+|..
T Consensus 9 ~d~~~A~~~~~~aa~~g--~~~----a~--lg~~y~~-------g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~ 71 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN--EMF----GC--LSLVSNS-------QINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGK 71 (138)
T ss_dssp HHHHHHHHHHHHHHHTT--CTT----HH--HHHHTCT-------TSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCS
T ss_pred cCHHHHHHHHHHHHcCC--CHh----hh--HHHHHHc-------CCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCC
Confidence 46777777777777665 322 33 7777744 12455678888877765 467777778887777
Q ss_pred --cCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhh
Q psy8160 214 --VGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFS 247 (324)
Q Consensus 214 --~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 247 (324)
.+++++|+.+|+++.+. .++.++++||.+|..
T Consensus 72 g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~ 105 (138)
T 1klx_A 72 YVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYA 105 (138)
T ss_dssp SSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHC
Confidence 77788888888887665 467777777777666
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=8.2e-10 Score=81.32 Aligned_cols=110 Identities=10% Similarity=-0.049 Sum_probs=95.8
Q ss_pred hhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhh----cCCCHHHHH
Q psy8160 181 HRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFS----NNSNREDYH 256 (324)
Q Consensus 181 ~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~~A~ 256 (324)
+++++|+.+|+++.+..+. .+. +|.+|...+.+++|+.+|+++.+. .++.+++++|.+|.. .++ +++|+
T Consensus 9 ~d~~~A~~~~~~aa~~g~~--~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d-~~~A~ 81 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEM--FGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKD-LRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCT--THH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCC-HHHHH
T ss_pred cCHHHHHHHHHHHHcCCCH--hhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCcc-HHHHH
Confidence 4899999999999988744 344 999999999999999999999886 689999999999998 888 99999
Q ss_pred HHH---------HHHHhhHHHHHH----cCCCCcchHHHHHHHhhhcCCChhhhhhch
Q psy8160 257 QAL---------NKYRDLGDFLVI----NNIPTSNNNRQCYNSYSTSIASCKHINNNK 301 (324)
Q Consensus 257 ~~~---------~~~~~lg~~~~~----~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 301 (324)
.+| .++++||.+|.. .+++++ |+.+|++|.+.. ++....++
T Consensus 82 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~--A~~~~~~Aa~~g--~~~A~~~l 135 (138)
T 1klx_A 82 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQ--AVKTFEKACRLG--SEDACGIL 135 (138)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHH--HHHHHHHHHHTT--CHHHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHH--HHHHHHHHHHCC--CHHHHHHH
Confidence 999 889999999999 889999 999999999874 34444433
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.11 E-value=7.9e-10 Score=74.62 Aligned_cols=83 Identities=18% Similarity=0.239 Sum_probs=69.4
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHI 128 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~l 128 (324)
...+++.+|.++...|++++|+.+|++++ .+|.+..++..+|.++...|++++|+..+++++...|... .++..+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~----~~~~~l 83 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA----EAKQNL 83 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCH----HHHHHH
Confidence 45688999999999999999999999999 8888888888888888888888888888888888777664 677788
Q ss_pred HHHHHHhh
Q psy8160 129 AHLHEVQR 136 (324)
Q Consensus 129 a~~~~~~~ 136 (324)
|.++...|
T Consensus 84 ~~~~~~~g 91 (91)
T 1na3_A 84 GNAKQKQG 91 (91)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhcC
Confidence 87776543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=99.08 E-value=1.7e-08 Score=85.25 Aligned_cols=162 Identities=7% Similarity=-0.012 Sum_probs=111.9
Q ss_pred HHHHHHHHh---hcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccc----hhHHHHHHHHHHHhhhCCc
Q psy8160 127 HIAHLHEVQ---RKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKS----HRETLAIHCLQKSIEADPK 199 (324)
Q Consensus 127 ~la~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~A~~~~~~al~~~~~ 199 (324)
..|.-+... .++.+|+.+|+++++++ |+. +.++..++++|......+... .....++.. ..++..+|.
T Consensus 201 Lra~~~l~~~~~~~~~~A~~l~e~Al~lD--P~~--a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a-~~a~~~~~~ 275 (372)
T 3ly7_A 201 YQAHDYLLHGDDKSLNRASELLGEIVQSS--PEF--TYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN-IVTLPELNN 275 (372)
T ss_dssp HHHHHHHHHCSHHHHHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH-HHTCGGGTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCC--HHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH-HHhcccCCc
Confidence 334444443 45689999999999999 998 457777777775322222101 112222221 124467799
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcch
Q psy8160 200 SGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNN 279 (324)
Q Consensus 200 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~ 279 (324)
++.++..+|..+...|++++|+..+++|+.++|+ ..+|..+|.++...|+ +++
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~------------------------~~e-- 328 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGM------------------------NRE-- 328 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTC------------------------HHH--
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCC------------------------HHH--
Confidence 9999999999999999999999999999999974 6666677777776666 667
Q ss_pred HHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHh
Q psy8160 280 NRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYR 320 (324)
Q Consensus 280 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~ 320 (324)
|++.|.+|+.++|..+....--...-...-+...-++..|.
T Consensus 329 A~e~~~~AlrL~P~~~t~~~~~~l~F~sn~~~i~~~~~~~~ 369 (372)
T 3ly7_A 329 AADAYLTAFNLRPGANTLYWIENGIFQTSVPYVVPYLDKFL 369 (372)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHHSSSCCCHHHHCHHHHHHH
T ss_pred HHHHHHHHHhcCCCcChHHHHhCceeecchhhhHHHHHhcc
Confidence 99999999999999875433322222344555666666654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.02 E-value=5.1e-10 Score=77.09 Aligned_cols=57 Identities=18% Similarity=0.401 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHhhhCCccHH-HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q psy8160 182 RETLAIHCLQKSIEADPKSGQ-SLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTW 238 (324)
Q Consensus 182 ~~~~A~~~~~~al~~~~~~~~-~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 238 (324)
++++|+..++++++.+|.++. +++.+|.++...|++++|+..|++++.++|+++.++
T Consensus 15 ~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 15 DIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp CHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 444444444444444444444 444444444444444444444444444444444444
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.02 E-value=2e-09 Score=74.09 Aligned_cols=89 Identities=11% Similarity=0.067 Sum_probs=72.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH-HHHHhHHHHhhcCCCHHHHHHHHHHHH----hhHHHHHHcCCCCcc
Q psy8160 204 LYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNAD-TWCSIGNKDFSNNSNREDYHQALNKYR----DLGDFLVINNIPTSN 278 (324)
Q Consensus 204 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~lg~~~~~~~~~~~~A~~~~~~~~----~lg~~~~~~~~~~~~ 278 (324)
.+.+|.++...|++++|+..|+++++.+|+++. +|+.+|.++...|+ +++|+..|.... .-..++. .+.+.+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~-~~~~~~- 79 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGD-WQKALNNYQSAIELNPDSPALQA-RKMVMD- 79 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTSTHHHH-HHHHHH-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCcHHHHH-HHHHHH-
Confidence 367899999999999999999999999999999 99999999999999 999999991111 1111111 145677
Q ss_pred hHHHHHHHhhhcCCChhh
Q psy8160 279 NNRQCYNSYSTSIASCKH 296 (324)
Q Consensus 279 ~A~~~~~~al~~~p~~~~ 296 (324)
++..|++++..+|+++.
T Consensus 80 -a~~~~~~~~~~~p~~~~ 96 (99)
T 2kc7_A 80 -ILNFYNKDMYNQLEHHH 96 (99)
T ss_dssp -HHHHHCCTTHHHHCCSS
T ss_pred -HHHHHHHHhccCccccc
Confidence 99999999999998764
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.01 E-value=6.2e-09 Score=92.75 Aligned_cols=134 Identities=10% Similarity=0.037 Sum_probs=106.1
Q ss_pred HHHHHhcccHHHHHHHHHHHHHhcCC----CcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCC---CCCchh-hHH
Q psy8160 91 GLMFKVNNEYDSALKHLTLCLIDASP----CTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDD---LPVHLK-ADI 162 (324)
Q Consensus 91 a~~~~~~~~~~~A~~~~~~~l~~~~~----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~-~~~ 162 (324)
+..+..+|+|++|+..+++++..... .......++.++|.+|..+|++++|+.++++++++.. -|++.. +.+
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 395 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA 395 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 34466789999999999999865322 2234567899999999999999999999999987520 044433 779
Q ss_pred HHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhh-----CCccH---HHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q psy8160 163 CRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEA-----DPKSG---QSLYLLGRCFAAVGKVHDAFLAYRNSVEKS 231 (324)
Q Consensus 163 ~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~~~~~---~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 231 (324)
+.++|.+|.. .|++++|+..+++++++ -|++| +....++.++..++.+++|...|+++.+..
T Consensus 396 l~nLa~~~~~-------~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 396 VMRAGLTNWH-------AGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-------CCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999977 55999999999999864 35554 667789999999999999999999987543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=3e-08 Score=80.38 Aligned_cols=125 Identities=14% Similarity=0.124 Sum_probs=94.6
Q ss_pred HHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcc--cchhHHHHHHHHHHHhhhCCc--cHHHHHHHHHHHHHc-----C
Q psy8160 145 YEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGE--KSHRETLAIHCLQKSIEADPK--SGQSLYLLGRCFAAV-----G 215 (324)
Q Consensus 145 ~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~A~~~~~~al~~~~~--~~~~~~~lg~~~~~~-----~ 215 (324)
+..++.... |++.++-.|..+++.-.-....|. ......+|...++++++++|+ +..+|..+|.+|... |
T Consensus 140 ~~~~l~~~~-~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gG 218 (301)
T 3u64_A 140 LHKVLSRCT-RVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGG 218 (301)
T ss_dssp HHHHHTTCC-GGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTC
T ss_pred HHHHHHHcC-ccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCC
Confidence 444554432 666554455555554432111121 466889999999999999999 677999999999995 9
Q ss_pred CHHHHHHHHHHHHccCCCC-HHHHHHhHHHHhhc-CCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCC
Q psy8160 216 KVHDAFLAYRNSVEKSEGN-ADTWCSIGNKDFSN-NSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIAS 293 (324)
Q Consensus 216 ~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~-~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~ 293 (324)
+.++|..+|++|++++|+. .+.++..|..+... |+ +++ |..++++|+..+|.
T Consensus 219 d~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd------------------------~~~--a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 219 GMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN------------------------RAG--FDEALDRALAIDPE 272 (301)
T ss_dssp CHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC------------------------HHH--HHHHHHHHHHCCGG
T ss_pred CHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC------------------------HHH--HHHHHHHHHcCCCC
Confidence 9999999999999999975 99999999888774 65 556 88889999998887
Q ss_pred h-hh
Q psy8160 294 C-KH 296 (324)
Q Consensus 294 ~-~~ 296 (324)
. |.
T Consensus 273 ~~P~ 276 (301)
T 3u64_A 273 SVPH 276 (301)
T ss_dssp GCSS
T ss_pred CCCC
Confidence 5 54
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.97 E-value=9.8e-09 Score=91.45 Aligned_cols=134 Identities=9% Similarity=-0.118 Sum_probs=103.0
Q ss_pred HHHHHHHhccHHHHHHHHHHHh-c--------CCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHh----cCCCcccHHH
Q psy8160 57 LGLMFKVNNEYDSALKHLTLCL-I--------DASPCTFTKLEGLMFKVNNEYDSALKHLTLCLID----ASPCTFTKLE 123 (324)
Q Consensus 57 lg~~~~~~~~~~~A~~~~~~al-~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~----~~~~~~~~~~ 123 (324)
.+..+..+|+|++|+..+++++ + +|.-......+|.+|..+|+|++|+.++++++.. -++.....+.
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 394 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM 394 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 3445678899999999999988 4 2333455666899999999999999999999754 3444445678
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHhcCC---CCCchh-hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhC
Q psy8160 124 VRFHIAHLHEVQRKYKTAKDSYEQLLKEDD---LPVHLK-ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEAD 197 (324)
Q Consensus 124 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 197 (324)
.+.+||.+|..+|++++|+..|++++++.. -|++.. +++...++.++.. .+.+++|+..|+++.+..
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e-------~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEME-------LRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999987520 055533 5566677777755 448999999999986543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.95 E-value=8.6e-07 Score=79.40 Aligned_cols=106 Identities=4% Similarity=-0.104 Sum_probs=86.8
Q ss_pred chhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHH
Q psy8160 180 SHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVG-KVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQA 258 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~ 258 (324)
.++.+.|...|.++ ...+.....|...+.+-...+ +.+.|...|+.+++..|+.++.|...+......|+ .+.|...
T Consensus 299 ~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~-~~~aR~l 376 (493)
T 2uy1_A 299 KRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGD-EENARAL 376 (493)
T ss_dssp HHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHH
T ss_pred cCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC-HHHHHHH
Confidence 34688899999999 433345677777777666555 69999999999999999999999999998889999 9999988
Q ss_pred H-------HHHHhhHHHHHHcCCCCcchHHHHHHHhhh
Q psy8160 259 L-------NKYRDLGDFLVINNIPTSNNNRQCYNSYST 289 (324)
Q Consensus 259 ~-------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~ 289 (324)
| .+|......-...|+.+. +...++++++
T Consensus 377 ~er~~k~~~lw~~~~~fE~~~G~~~~--~r~v~~~~~~ 412 (493)
T 2uy1_A 377 FKRLEKTSRMWDSMIEYEFMVGSMEL--FRELVDQKMD 412 (493)
T ss_dssp HHHSCCBHHHHHHHHHHHHHHSCHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHH--HHHHHHHHHH
Confidence 7 567777777777798888 8888998885
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.95 E-value=4e-09 Score=72.89 Aligned_cols=65 Identities=12% Similarity=0.023 Sum_probs=48.0
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhc
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDA 114 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~ 114 (324)
+..+++.+|.++...|++++|+.+|++++ .+|.+..++..+|.++...|++++|+..|++++...
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 45677888888888888888888888877 777777777777777777777777777777666543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=5.8e-07 Score=72.96 Aligned_cols=94 Identities=7% Similarity=-0.074 Sum_probs=81.8
Q ss_pred cHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc-HHHHHHHHHHHHH-c
Q psy8160 137 KYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS-GQSLYLLGRCFAA-V 214 (324)
Q Consensus 137 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~lg~~~~~-~ 214 (324)
....|...++++++++ |+.....++..+|.+|...-..+ -|+.++|..+|+++++++|+. ..+++..|..+.. .
T Consensus 178 ~l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~--gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 178 TVHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESF--GGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTT--TCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTT
T ss_pred hHHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCcc--CCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhc
Confidence 4678999999999999 98666789999999997743332 459999999999999999975 9999999999888 5
Q ss_pred CCHHHHHHHHHHHHccCCCC
Q psy8160 215 GKVHDAFLAYRNSVEKSEGN 234 (324)
Q Consensus 215 ~~~~~A~~~~~~al~~~p~~ 234 (324)
|+++.|...+++++..+|..
T Consensus 254 gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 254 NNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp TCHHHHHHHHHHHHHCCGGG
T ss_pred CCHHHHHHHHHHHHcCCCCC
Confidence 99999999999999988873
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=4.6e-08 Score=71.70 Aligned_cols=99 Identities=8% Similarity=0.020 Sum_probs=80.5
Q ss_pred cHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhC-C-ccHHHHHHHHHHHHHc
Q psy8160 137 KYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEAD-P-KSGQSLYLLGRCFAAV 214 (324)
Q Consensus 137 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~-~~~~~~~~lg~~~~~~ 214 (324)
....+.+.|.+.+..+ +.+ .++.+++||++..-.. ..+.++++..++.+++.+ | ...+++|++|..+...
T Consensus 13 ~l~~~~~~y~~e~~~~--~~~--~~~~F~ya~~Lv~S~~----~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl 84 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAG--SVS--KSTQFEYAWCLVRSKY----NDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRL 84 (152)
T ss_dssp HHHHHHHHHHHHHHTT--CCC--HHHHHHHHHHHHTCSS----HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccC--CCc--HHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHc
Confidence 4456667777777766 555 5599999999966221 237889999999999998 7 5689999999999999
Q ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHhHH
Q psy8160 215 GKVHDAFLAYRNSVEKSEGNADTWCSIGN 243 (324)
Q Consensus 215 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 243 (324)
|+|++|..+++++++++|++..+....-.
T Consensus 85 ~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ 113 (152)
T 1pc2_A 85 KEYEKALKYVRGLLQTEPQNNQAKELERL 113 (152)
T ss_dssp SCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 99999999999999999999887665433
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.78 E-value=2.1e-08 Score=67.99 Aligned_cols=74 Identities=11% Similarity=0.030 Sum_probs=61.7
Q ss_pred CCccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcC
Q psy8160 197 DPKSGQSLYLLGRCFAAVGK---VHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINN 273 (324)
Q Consensus 197 ~~~~~~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~ 273 (324)
+|++++.+..+|.+++..++ .++|...+++++..+|+++.+++.+|..++..|+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~----------------------- 58 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFR----------------------- 58 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-----------------------
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCC-----------------------
Confidence 58889999999999876665 6899999999999999999998888888888887
Q ss_pred CCCcchHHHHHHHhhhcCCChhh
Q psy8160 274 IPTSNNNRQCYNSYSTSIASCKH 296 (324)
Q Consensus 274 ~~~~~~A~~~~~~al~~~p~~~~ 296 (324)
+++ |+.+|+++++.+|.++.
T Consensus 59 -y~~--Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 59 -FQE--AIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp -HHH--HHHHHHHHHTCCCTTCC
T ss_pred -HHH--HHHHHHHHHhhCCCCcc
Confidence 555 88888888888887543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.78 E-value=7.8e-08 Score=65.16 Aligned_cols=81 Identities=11% Similarity=0.044 Sum_probs=66.7
Q ss_pred ccchHHHHHHHHHHHHhcc---HHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHH
Q psy8160 48 LRANEVHLRLGLMFKVNNE---YDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLE 123 (324)
Q Consensus 48 ~~~~~~~~~lg~~~~~~~~---~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~ 123 (324)
|.+++++..+|.+++..++ .++|..++++++ .||++..+...+|..+...|+|++|+.+|++++...|. ......
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~~~ 81 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDRVT 81 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHH
Confidence 3467789999999876666 799999999999 99999999999999999999999999999999998888 444444
Q ss_pred HHHHHH
Q psy8160 124 VRFHIA 129 (324)
Q Consensus 124 ~~~~la 129 (324)
+...+.
T Consensus 82 i~~~I~ 87 (93)
T 3bee_A 82 IIESIN 87 (93)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.75 E-value=5.6e-07 Score=76.02 Aligned_cols=72 Identities=15% Similarity=0.135 Sum_probs=61.6
Q ss_pred CCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q psy8160 155 PVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN 234 (324)
Q Consensus 155 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 234 (324)
|.. +.++..++..+.. .|++++|+..+++++.++| +..+|..+|.++...|++++|++.|++|+.++|..
T Consensus 274 ~~~--a~~~~alal~~l~-------~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 274 NNL--SIIYQIKAVSALV-------KGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp TTC--HHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred CcC--HHHHHHHHHHHHh-------CCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 555 4577777776654 4599999999999999997 57788999999999999999999999999999977
Q ss_pred HH
Q psy8160 235 AD 236 (324)
Q Consensus 235 ~~ 236 (324)
+.
T Consensus 344 ~t 345 (372)
T 3ly7_A 344 NT 345 (372)
T ss_dssp HH
T ss_pred Ch
Confidence 53
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=3.2e-08 Score=72.53 Aligned_cols=96 Identities=6% Similarity=0.040 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHccC-C-CCHHHHHHhHHHHhhcCCCHHHHH
Q psy8160 182 RETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVG---KVHDAFLAYRNSVEKS-E-GNADTWCSIGNKDFSNNSNREDYH 256 (324)
Q Consensus 182 ~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~lg~~~~~~~~~~~~A~ 256 (324)
....+.+.|.+.+..+|.+.++.+++|+++...+ +.++++..++.+++.+ | ++.++++++|..+++.++
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~------ 86 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE------ 86 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSC------
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccC------
Confidence 5667888888888888999999999999999988 6679999999999988 6 446666666666666665
Q ss_pred HHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhh
Q psy8160 257 QALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDF 303 (324)
Q Consensus 257 ~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 303 (324)
|++ |+++++++++.+|+|.++..-...
T Consensus 87 ------------------Y~~--A~~y~~~lL~ieP~n~QA~~Lk~~ 113 (152)
T 1pc2_A 87 ------------------YEK--ALKYVRGLLQTEPQNNQAKELERL 113 (152)
T ss_dssp ------------------HHH--HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ------------------HHH--HHHHHHHHHhcCCCCHHHHHHHHH
Confidence 677 999999999999999888765543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.71 E-value=4.8e-06 Score=74.53 Aligned_cols=200 Identities=10% Similarity=0.025 Sum_probs=146.9
Q ss_pred HHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHH
Q psy8160 33 AIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCL 111 (324)
Q Consensus 33 A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 111 (324)
....|++++...|.. +.+|+..+......|+.+.|...|.+++ . |.+...+...+.... .++ . ++++.
T Consensus 198 v~~~ye~al~~~p~~---~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e-~~~---~---~~~l~ 266 (493)
T 2uy1_A 198 MHFIHNYILDSFYYA---EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMD-EEA---V---YGDLK 266 (493)
T ss_dssp HHHHHHHHHHHTTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTT-CTH---H---HHHHH
T ss_pred HHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcc-hhH---H---HHHHH
Confidence 567999999999864 6689999999999999999999999999 9 988776665444321 111 1 22221
Q ss_pred Hh---cCC------CcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchh
Q psy8160 112 ID---ASP------CTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHR 182 (324)
Q Consensus 112 ~~---~~~------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 182 (324)
.. ... .......+|...+......++.+.|...|.++ . . |.. ...++...+.+.+.. + ++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~--~~~-~~~v~i~~A~lE~~~---~---~d 335 (493)
T 2uy1_A 267 RKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-N--EGV-GPHVFIYCAFIEYYA---T---GS 335 (493)
T ss_dssp HHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-T--SCC-CHHHHHHHHHHHHHH---H---CC
T ss_pred HHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-C--CCC-ChHHHHHHHHHHHHH---C---CC
Confidence 11 000 00112356778888888889999999999999 3 3 321 234665555555431 1 15
Q ss_pred HHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 183 ETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 183 ~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
.+.|...|+.+++..|+++..|...+......|+.+.|...|+++ +.....|......-...|+ .+.+.+.+
T Consensus 336 ~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~-~~~~r~v~ 407 (493)
T 2uy1_A 336 RATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGS-MELFRELV 407 (493)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSC-HHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCC-HHHHHHHH
Confidence 889999999999999999998888888888999999999999998 3468888888888888899 88887766
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.70 E-value=1.9e-07 Score=64.84 Aligned_cols=76 Identities=13% Similarity=0.092 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhC-------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q psy8160 160 ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEAD-------PKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSE 232 (324)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 232 (324)
+.-++.+|..++. .+++..|+..|+.|++.. +..+.++..+|.++..+|+++.|+..+++++.++|
T Consensus 5 a~dc~~lG~~~~~-------~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 5 AEDCFELGKVAYT-------EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHH-------ccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 5578899999988 559999999999999853 34678999999999999999999999999999999
Q ss_pred CCHHHHHHhH
Q psy8160 233 GNADTWCSIG 242 (324)
Q Consensus 233 ~~~~~~~~lg 242 (324)
+++.+..+++
T Consensus 78 ~~~~~~~n~~ 87 (104)
T 2v5f_A 78 EHQRANGNLK 87 (104)
T ss_dssp TCHHHHHHHH
T ss_pred CCHHHHhhHH
Confidence 9999988877
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.59 E-value=1.2e-06 Score=60.60 Aligned_cols=83 Identities=20% Similarity=0.148 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Q psy8160 51 NEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAH 130 (324)
Q Consensus 51 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~ 130 (324)
++-++.+|..++..++|+.|+.+|+.|+ + .....+.......+++..+|.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al--------------------------~----~~~~~~~~~~~~~~i~~~L~~ 54 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQAL--------------------------R----QLDEGEISTIDKVSVLDYLSY 54 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH--------------------------H----HHHTTCCCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHH--------------------------H----hhhccCCCcccHHHHHHHHHH
Confidence 3457788888888888888888887655 0 011111112345688999999
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHH
Q psy8160 131 LHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLG 167 (324)
Q Consensus 131 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~ 167 (324)
++..+|++++|+..+++++... |++.. +..+++
T Consensus 55 ~~~~~g~~~~A~~~~~~al~l~--P~~~~--~~~n~~ 87 (104)
T 2v5f_A 55 AVYQQGDLDKALLLTKKLLELD--PEHQR--ANGNLK 87 (104)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHH--HHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHhcC--CCCHH--HHhhHH
Confidence 9999999999999999999999 88843 666666
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=8e-07 Score=77.90 Aligned_cols=99 Identities=10% Similarity=-0.035 Sum_probs=79.7
Q ss_pred HhhcHHHHHHHHHHHHhcCC---CCCchh-hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhh--------CCccH
Q psy8160 134 VQRKYKTAKDSYEQLLKEDD---LPVHLK-ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEA--------DPKSG 201 (324)
Q Consensus 134 ~~~~~~~A~~~~~~al~~~~---~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~~~~~ 201 (324)
..|++++|+..+++++++.. -|++.. +.++.++|.+|.. .|++++|+.+++++++. .|+-.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~-------~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a 382 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLY-------MQDWEGALKYGQKIIKPYSKHYPVYSLNVA 382 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHh-------hcCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 45789999999999997531 144433 6789999999976 55999999999999865 33444
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcc-----CCCCHHHHH
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEK-----SEGNADTWC 239 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~ 239 (324)
..+.+||.+|..+|++++|+..|++|+.+ .|++|.+-.
T Consensus 383 ~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 383 SMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 77999999999999999999999999874 688876643
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=1.7e-06 Score=75.97 Aligned_cols=112 Identities=10% Similarity=-0.103 Sum_probs=83.5
Q ss_pred HHHHHhccHHHHHHHHHHHh-c-----CCCC---chhhHHHHHHHHhcccHHHHHHHHHHHHHh----cCCCcccHHHHH
Q psy8160 59 LMFKVNNEYDSALKHLTLCL-I-----DASP---CTFTKLEGLMFKVNNEYDSALKHLTLCLID----ASPCTFTKLEVR 125 (324)
Q Consensus 59 ~~~~~~~~~~~A~~~~~~al-~-----~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~----~~~~~~~~~~~~ 125 (324)
.-+..+|+|++|+..+++++ + .|.+ ......+|.+|..+|+|++|+.++++++.. .++.....+..+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 34557889999999999988 4 2333 344566899999999999999999999754 455555667889
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHhcCC---CCCchh-hHHHHHHHHHH
Q psy8160 126 FHIAHLHEVQRKYKTAKDSYEQLLKEDD---LPVHLK-ADICRQLGWMY 170 (324)
Q Consensus 126 ~~la~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~-~~~~~~l~~~~ 170 (324)
+++|.+|..+|++++|+.+|++++++-. -|++.. .++...++.+.
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~ 423 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECD 423 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 9999999999999999999999987520 045433 34555555544
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=1.4e-06 Score=76.33 Aligned_cols=92 Identities=7% Similarity=-0.003 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhcc-----CCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHH
Q psy8160 31 IKAIKTFQQLLYV-----DPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALK 105 (324)
Q Consensus 31 ~~A~~~~~~~l~~-----~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~ 105 (324)
++|+..|+++|++ .|+++....++..||.+|..+|+|++|+.++++++ +
T Consensus 315 ~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL--------------------------~ 368 (433)
T 3qww_A 315 SELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKII--------------------------K 368 (433)
T ss_dssp HHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------------------------H
T ss_pred HHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH--------------------------H
Confidence 5677777777763 45555556677777777777777777777777433 3
Q ss_pred HHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc
Q psy8160 106 HLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKE 151 (324)
Q Consensus 106 ~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 151 (324)
.+++++ ++.....+..+.+||.+|..+|++++|+..|++++++
T Consensus 369 i~~~~l---G~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 369 PYSKHY---PVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHS---CSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHc---CCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 333333 3334455678999999999999999999999999876
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=2.7e-06 Score=74.58 Aligned_cols=114 Identities=11% Similarity=0.016 Sum_probs=86.0
Q ss_pred HHHhcccHHHHHHHHHHHHHhc----CCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCC---CCCchh-hHHHH
Q psy8160 93 MFKVNNEYDSALKHLTLCLIDA----SPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDD---LPVHLK-ADICR 164 (324)
Q Consensus 93 ~~~~~~~~~~A~~~~~~~l~~~----~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~-~~~~~ 164 (324)
-+..+|++++|+..+++++... ++.......++.++|.+|..+|++++|+.++++++.... -|++.. +..+.
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3456799999999999998652 223335567899999999999999999999999986521 044433 77899
Q ss_pred HHHHHHHhhhhhcccchhHHHHHHHHHHHhhh-----CCccH---HHHHHHHHHHHH
Q psy8160 165 QLGWMYHCIDTLGEKSHRETLAIHCLQKSIEA-----DPKSG---QSLYLLGRCFAA 213 (324)
Q Consensus 165 ~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~~~~~---~~~~~lg~~~~~ 213 (324)
++|.+|.. .|++++|+.++++++++ -|++| +++.+|+.+...
T Consensus 376 nLa~~~~~-------~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 376 KVGKLQLH-------QGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp HHHHHHHH-------TTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-------cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 99999977 55899999999999864 45555 445566666543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=98.31 E-value=2.1e-05 Score=55.50 Aligned_cols=101 Identities=8% Similarity=0.017 Sum_probs=78.8
Q ss_pred hhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhC-C-ccHHHHHHHHHHHH
Q psy8160 135 QRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEAD-P-KSGQSLYLLGRCFA 212 (324)
Q Consensus 135 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~-~~~~~~~~lg~~~~ 212 (324)
......+...|.+.+..+ +.. .++.+++||++..-.. ..+..+++..++..+..+ | ..-+.+|.||..+.
T Consensus 14 ~~~l~~~~~~y~~e~~~~--~~s--~~~~F~yAw~Lv~S~~----~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~y 85 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAG--SVS--KSTQFEYAWCLVRTRY----NDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 85 (126)
T ss_dssp HHHHHHHHHHHHHHHHHS--CCC--HHHHHHHHHHHTTSSS----HHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccC--CCc--HHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 344556666777777766 444 5599999999955211 336778999999999887 5 56689999999999
Q ss_pred HcCCHHHHHHHHHHHHccCCCCHHHHHHhHH
Q psy8160 213 AVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243 (324)
Q Consensus 213 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 243 (324)
+.|+|++|..+++.+++++|++..+......
T Consensus 86 klg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~ 116 (126)
T 1nzn_A 86 RLKEYEKALKYVRGLLQTEPQNNQAKELERL 116 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999999999999999999887655443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00077 Score=60.34 Aligned_cols=162 Identities=10% Similarity=-0.034 Sum_probs=117.6
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHh-c--CCCCchhhHHHHHHHHh---------cccHHHHHHHHHHHHHhcCCCcccH
Q psy8160 54 HLRLGLMFKVNNEYDSALKHLTLCL-I--DASPCTFTKLEGLMFKV---------NNEYDSALKHLTLCLIDASPCTFTK 121 (324)
Q Consensus 54 ~~~lg~~~~~~~~~~~A~~~~~~al-~--~~~~~~~~~~la~~~~~---------~~~~~~A~~~~~~~l~~~~~~~~~~ 121 (324)
+..+-..+.+.|++++|++.|++.. . .|+... +..+-..+.. .+..+.|.+.|++.....-...
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~t-yn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd--- 104 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYH-YNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN--- 104 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCC---
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhH-HHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCC---
Confidence 4444567788999999999999988 3 344433 3333334432 3457889999998876532211
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhC-Ccc
Q psy8160 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEAD-PKS 200 (324)
Q Consensus 122 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~ 200 (324)
...+..+-..+...|+.++|...|++.....-.|+ ..++..+-..+.. .|+.++|...+++..+.. ..+
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd---~~tyn~lI~~~~~-------~g~~~~A~~l~~~M~~~G~~Pd 174 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR---LRSYGPALFGFCR-------KGDADKAYEVDAHMVESEVVPE 174 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC---HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc---cceehHHHHHHHH-------CCCHHHHHHHHHHHHhcCCCCC
Confidence 25677888889999999999999999877654354 3366666666654 458999999999987643 235
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q psy8160 201 GQSLYLLGRCFAAVGKVHDAFLAYRNSVE 229 (324)
Q Consensus 201 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 229 (324)
...|..+-..+...|+.++|...+++..+
T Consensus 175 ~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 175 EPELAALLKVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 67788888899999999999999998765
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00035 Score=62.59 Aligned_cols=165 Identities=6% Similarity=-0.081 Sum_probs=124.9
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhh--cccchhHHHHHHHHHHHhhhC-CccH
Q psy8160 125 RFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTL--GEKSHRETLAIHCLQKSIEAD-PKSG 201 (324)
Q Consensus 125 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~A~~~~~~al~~~-~~~~ 201 (324)
+..+-..+...|+.++|++.|++.....-.|+ ..++..+-.++...... ....+..++|...|++..... +.+.
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd---~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLS---QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCC---HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 44444667788999999999999887764454 23555555444321110 112457899999999987543 2366
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccC-CCCHHHHHHhHHHHhhcCCCHHHHHHHH------------HHHHhhHHH
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEKS-EGNADTWCSIGNKDFSNNSNREDYHQAL------------NKYRDLGDF 268 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~A~~~~------------~~~~~lg~~ 268 (324)
.+|..+-..+...|++++|...|++..... +-+..+|..+-..|.+.|+ .++|.+.| .+|..+-..
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~-~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~ 184 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGD-ADKAYEVDAHMVESEVVPEEPELAALLKV 184 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCC-HHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 788888899999999999999999987643 2267888889999999999 99999999 778889999
Q ss_pred HHHcCCCCcchHHHHHHHhhh--cCCChh
Q psy8160 269 LVINNIPTSNNNRQCYNSYST--SIASCK 295 (324)
Q Consensus 269 ~~~~~~~~~~~A~~~~~~al~--~~p~~~ 295 (324)
|.+.|+.++ |.+.+++.-+ ..|+..
T Consensus 185 ~~~~g~~d~--A~~ll~~Mr~~g~~ps~~ 211 (501)
T 4g26_A 185 SMDTKNADK--VYKTLQRLRDLVRQVSKS 211 (501)
T ss_dssp HHHTTCHHH--HHHHHHHHHHHTSSBCHH
T ss_pred HhhCCCHHH--HHHHHHHHHHhCCCcCHH
Confidence 999999999 9999988754 456543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.01 E-value=2.7e-05 Score=57.45 Aligned_cols=46 Identities=20% Similarity=0.302 Sum_probs=35.0
Q ss_pred cHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHH
Q psy8160 120 TKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMY 170 (324)
Q Consensus 120 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~ 170 (324)
...++.|.++.||...+++++|+..++.+-...+ . +.+...+|.+|
T Consensus 120 ~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~R---t--~kvnm~LakLy 165 (167)
T 3ffl_A 120 SEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQR---T--PKINMLLANLY 165 (167)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGC---C--HHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhc---C--HHHHHHHHHHh
Confidence 3458999999999999999999999877533321 1 44777778776
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00016 Score=51.12 Aligned_cols=81 Identities=14% Similarity=0.059 Sum_probs=67.6
Q ss_pred hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q psy8160 160 ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPK-SGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTW 238 (324)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 238 (324)
..+.++.||+...-.. ..+..+++..++..+...|. .-+.+|.||..+.+.|+|++|..+.+.++++.|++..+.
T Consensus 40 ~qt~F~yAw~Lv~S~~----~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTD----VNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp HHHHHHHHHHHHHSSC----HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred hhhHHHHHHHHHcCCC----HHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 5689999999865221 33788999999999998884 568999999999999999999999999999999998876
Q ss_pred HHhHHH
Q psy8160 239 CSIGNK 244 (324)
Q Consensus 239 ~~lg~~ 244 (324)
.....+
T Consensus 116 ~Lk~~I 121 (134)
T 3o48_A 116 ALKSMV 121 (134)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544433
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0002 Score=50.49 Aligned_cols=99 Identities=14% Similarity=0.024 Sum_probs=69.7
Q ss_pred cHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHH---HHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhh
Q psy8160 99 EYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKT---AKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDT 175 (324)
Q Consensus 99 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~---A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~ 175 (324)
....+...|.+.+...+.+. ++.|++|+++...++... ++..++.++... .+...-+.++.+|..+++
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~----~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~--~p~~~Rd~lY~LAvg~yk--- 86 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSK----STQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYR--- 86 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCH----HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS--CHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhccCCCcH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHH---
Confidence 34455555666665545443 788888888887765544 888888877754 221235688888888877
Q ss_pred hcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHH
Q psy8160 176 LGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRC 210 (324)
Q Consensus 176 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~ 210 (324)
.++|++|..+++..++..|.+..+......+
T Consensus 87 ----lg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 87 ----LKEYEKALKYVRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp ----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ----hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 5589999999999999999888776655444
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00034 Score=50.17 Aligned_cols=78 Identities=14% Similarity=0.076 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q psy8160 160 ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPK-SGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTW 238 (324)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 238 (324)
.++.++.+|+...-.. ..+..+++..++..+...|. .-+.+|.||..+.++|+|++|..+.+..++++|++..+.
T Consensus 39 ~~t~F~YAw~Lv~S~~----~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 39 IQSRFNYAWGLIKSTD----VNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp HHHHHHHHHHHHHSSS----HHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred HHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 5699999999965222 33788999999999998884 568999999999999999999999999999999998775
Q ss_pred HHh
Q psy8160 239 CSI 241 (324)
Q Consensus 239 ~~l 241 (324)
...
T Consensus 115 ~Lk 117 (144)
T 1y8m_A 115 ALK 117 (144)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00016 Score=53.42 Aligned_cols=89 Identities=8% Similarity=-0.025 Sum_probs=62.8
Q ss_pred chhHHHHHHHHHHHhhhCCccH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHccC---CCC-------------
Q psy8160 180 SHRETLAIHCLQKSIEADPKSG---------QSLYLLGRCFAAVGKVHDAFLAYRNSVEKS---EGN------------- 234 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~~~---------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~------------- 234 (324)
.+.|+.|+.....++....+++ ++++.+|..++..++|..|...|++|+... +.+
T Consensus 33 ~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~ 112 (167)
T 3ffl_A 33 AGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSAST 112 (167)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----------------
T ss_pred hhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCC
Confidence 3478888888888765543333 478899999999999999999999987532 111
Q ss_pred ---------HHHHHHhHHHHhhcCCCHHHHHHHH----------HHHHhhHHHH
Q psy8160 235 ---------ADTWCSIGNKDFSNNSNREDYHQAL----------NKYRDLGDFL 269 (324)
Q Consensus 235 ---------~~~~~~lg~~~~~~~~~~~~A~~~~----------~~~~~lg~~~ 269 (324)
.+..+.++.||...++ +.+|+..+ .+...||.+|
T Consensus 113 p~s~~~~~e~Elkykia~C~~~l~~-~~~Ai~~Le~Ip~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 113 PQSQCLPSEIEVKYKLAECYTVLKQ-DKDAIAILDGIPSRQRTPKINMLLANLY 165 (167)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTTC-HHHHHHHHHTSCGGGCCHHHHHHHHHHC
T ss_pred cccccccchHHHHHHHHHHHHHHCC-HHHHHHHHhcCCchhcCHHHHHHHHHHh
Confidence 2566677777777777 77777766 5555555554
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0013 Score=47.53 Aligned_cols=124 Identities=10% Similarity=0.012 Sum_probs=83.7
Q ss_pred cCCCCchhhHHHHHHHHhcccH------HHHHHHHHHHHHhcCCCcc----cHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q psy8160 79 IDASPCTFTKLEGLMFKVNNEY------DSALKHLTLCLIDASPCTF----TKLEVRFHIAHLHEVQRKYKTAKDSYEQL 148 (324)
Q Consensus 79 ~~~~~~~~~~~la~~~~~~~~~------~~A~~~~~~~l~~~~~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~a 148 (324)
..|.+.+.+..........|+. +.-++.|++++...|+... ....+|...|.. ...++.++|.+.|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 5666666666666666666776 7777788888877776542 223456666755 5668999999999999
Q ss_pred HhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcC
Q psy8160 149 LKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVG 215 (324)
Q Consensus 149 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 215 (324)
+... ... +.+|...|....+ .++...|...+.+++.+.|...+. ...+..-...|
T Consensus 87 ~~~h--KkF--AKiwi~~AqFEiR-------qgnl~kARkILg~AiG~~~k~~~~-le~a~~nl~~~ 141 (161)
T 4h7y_A 87 RANC--KKF--AFVHISFAQFELS-------QGNVKKSKQLLQKAVERGAVPLEM-LEIALRNLNLQ 141 (161)
T ss_dssp HHHC--TTB--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHTTCBCHHH-HHHHHHHHHTT
T ss_pred HHHh--HHH--HHHHHHHHHHHHH-------cccHHHHHHHHHHHhccCCCcHHH-HHHHHHhhhcC
Confidence 8874 443 5566666665544 558999999999999999876544 33344444444
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0012 Score=47.79 Aligned_cols=112 Identities=12% Similarity=0.006 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHhhcH------HHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhh
Q psy8160 122 LEVRFHIAHLHEVQRKY------KTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIE 195 (324)
Q Consensus 122 ~~~~~~la~~~~~~~~~------~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 195 (324)
.+.|..........|+. ++-++.|++++..- |... ...|..-..+...+... ...++.++|...|+.++.
T Consensus 13 yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~--Pp~k-~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 13 PEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEAL--PPDK-YGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARA 88 (161)
T ss_dssp HHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHS--CGGG-GTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcC--Cccc-cccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHH
Confidence 38888888888888998 88889999999876 5432 11222222222111111 013588899999999998
Q ss_pred hCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHH
Q psy8160 196 ADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADT 237 (324)
Q Consensus 196 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 237 (324)
.....+.+|...|.--..+|+...|.+.+.+|+.+.|...+.
T Consensus 89 ~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 89 NCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred HhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 888889999999999999999999999999999999986554
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0061 Score=56.73 Aligned_cols=118 Identities=18% Similarity=0.254 Sum_probs=81.9
Q ss_pred HHHhhc-HHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhh--------CCcc--
Q psy8160 132 HEVQRK-YKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEA--------DPKS-- 200 (324)
Q Consensus 132 ~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~~~~-- 200 (324)
....++ ++.|+..+++....+ |.. .+++..+.+... ... ..+--+|+..+.++++. .+.+
T Consensus 258 ~~~t~~~~~~a~~~le~L~~~~--p~~---~~~~~~~~i~~~-~~~---~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 258 IAITPSLVDFTIDYLKGLTKKD--PIH---DIYYKTAMITIL-DHI---ETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHTCGGGHHHHHHHHHHHHHHC--GGG---HHHHHHHHHHHH-TTC---GGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HcccccHHHHHHHHHHHHHhhC--Cch---hHHHHHHHHHHH-HHh---hhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 334555 578999999988887 643 233333333211 001 11344566666666531 2222
Q ss_pred --------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 201 --------GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 201 --------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
...+..-+.-+...|+++-|++..++|+...|..-..|+.|+.+|..+|+ |+.|+-.+
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d-~e~ALLtL 394 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEE-YEKALFAI 394 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhcc-HHHHHHHH
Confidence 23444556777789999999999999999999999999999999999999 99998877
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.014 Score=41.25 Aligned_cols=79 Identities=13% Similarity=0.023 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHhh---cHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCC
Q psy8160 122 LEVRFHIAHLHEVQR---KYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADP 198 (324)
Q Consensus 122 ~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 198 (324)
..+.|++|+++.... +..+++..++.++... |.. .-+.++.+|..+++ .|+|++|..+.+.+++..|
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~-~Rd~LYyLAvg~yk-------lgdY~~Ar~y~d~lL~~eP 109 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESR-RRECLYYLTIGCYK-------LGEYSMAKRYVDTLFEHER 109 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGG-HHHHHHHHHHHHHH-------HTCHHHHHHHHHHHHTTCT
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cch-hHHHHHHHHHHHHH-------hhhHHHHHHHHHHHHhhCC
Confidence 478899998888764 4567999999988876 633 35688999988887 5599999999999999999
Q ss_pred ccHHHHHHHHHH
Q psy8160 199 KSGQSLYLLGRC 210 (324)
Q Consensus 199 ~~~~~~~~lg~~ 210 (324)
.+..+......+
T Consensus 110 ~N~QA~~Lk~~I 121 (134)
T 3o48_A 110 NNKQVGALKSMV 121 (134)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999887665554
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.078 Score=45.48 Aligned_cols=171 Identities=16% Similarity=0.054 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHH-----HHHHHH-hcccHHHHHHHHHHHHHhc--CCCcccHH
Q psy8160 52 EVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKL-----EGLMFK-VNNEYDSALKHLTLCLIDA--SPCTFTKL 122 (324)
Q Consensus 52 ~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~-----la~~~~-~~~~~~~A~~~~~~~l~~~--~~~~~~~~ 122 (324)
.+.+.||..|...|++++-.+.+.... .-+.-..+... +-..+. ..+..+.-++.+..++.-. ....+-+.
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999888887765 22222222111 222222 2355555566666665432 22222233
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCC--CchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhC---
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLP--VHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEAD--- 197 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--- 197 (324)
.+-..+|..|...|+|.+|...+.++...-... .....+++.....+|.. .+++.++...+.++....
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~-------~~n~~k~k~~l~~a~~~~~ai 172 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHA-------LSNLPKARAALTSARTTANAI 172 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH-------hccHHHHHHHHHHHHhhhccC
Confidence 455588999999999999999999887643211 11224566666666655 448888888888886432
Q ss_pred CccH----HHHHHHHHHHH-HcCCHHHHHHHHHHHHc
Q psy8160 198 PKSG----QSLYLLGRCFA-AVGKVHDAFLAYRNSVE 229 (324)
Q Consensus 198 ~~~~----~~~~~lg~~~~-~~~~~~~A~~~~~~al~ 229 (324)
+.+| .....-|..+. ..++|.+|...|-.++.
T Consensus 173 ~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 173 YCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 1223 45566799999 89999999999999874
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.98 E-value=0.032 Score=40.00 Aligned_cols=79 Identities=13% Similarity=0.023 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHhh---cHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCC
Q psy8160 122 LEVRFHIAHLHEVQR---KYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADP 198 (324)
Q Consensus 122 ~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 198 (324)
.++.|++|+++.... +..+++..++.++... |.. .-+.++.+|..+++ .++|++|..+.+..++..|
T Consensus 39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~--~~~-~RdcLYyLAvg~yk-------l~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESR-RRECLYYLTIGCYK-------LGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC--CST-HHHHHHHHHHHHHT-------TTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--ccc-hhHHHHHHHHHHHH-------hhhHHHHHHHHHHHHhcCC
Confidence 478999999888765 4567899999988876 643 35688889988877 5599999999999999999
Q ss_pred ccHHHHHHHHHH
Q psy8160 199 KSGQSLYLLGRC 210 (324)
Q Consensus 199 ~~~~~~~~lg~~ 210 (324)
.+..+......+
T Consensus 109 ~n~QA~~Lk~~I 120 (144)
T 1y8m_A 109 NNKQVGALKSMV 120 (144)
T ss_dssp CCHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 998876655444
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.023 Score=53.77 Aligned_cols=96 Identities=15% Similarity=0.060 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHc--------cCCCCHHHHHHhHHHHhhcCCCHH
Q psy8160 182 RETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVE--------KSEGNADTWCSIGNKDFSNNSNRE 253 (324)
Q Consensus 182 ~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--------~~p~~~~~~~~lg~~~~~~~~~~~ 253 (324)
++++|.+..+. .+++..|..+|..+...++++.|+.+|.++-. ....+.+.+..++......|+ +.
T Consensus 667 ~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~-~~ 740 (814)
T 3mkq_A 667 QLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGK-FN 740 (814)
T ss_dssp CHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-HH
T ss_pred CHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCc-hH
Confidence 66666655332 24556777777777777777777777766521 123445555566666666666 66
Q ss_pred HHHHHH---HHHHhhHHHHHHcCCCCcchHHHHHH
Q psy8160 254 DYHQAL---NKYRDLGDFLVINNIPTSNNNRQCYN 285 (324)
Q Consensus 254 ~A~~~~---~~~~~lg~~~~~~~~~~~~~A~~~~~ 285 (324)
.|..+| .-+...-.+|.+.+++++ |+..-+
T Consensus 741 ~A~~~~~~~g~~~~a~~~~~~~~~~~~--A~~lA~ 773 (814)
T 3mkq_A 741 LAFNAYWIAGDIQGAKDLLIKSQRFSE--AAFLGS 773 (814)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTTCHHH--HHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHcCChHH--HHHHHH
Confidence 665543 111222233555556666 555433
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.087 Score=45.17 Aligned_cols=26 Identities=15% Similarity=0.043 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHH
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQL 148 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~a 148 (324)
.+...+|.+|...|++++-.+.+...
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~ 45 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVT 45 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34556666666666666655555444
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.14 Score=47.71 Aligned_cols=132 Identities=15% Similarity=0.137 Sum_probs=81.2
Q ss_pred HHHHHhccc-HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH---HhhcHHHHHHHHHHHHhc-----CCC-CCchhh
Q psy8160 91 GLMFKVNNE-YDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHE---VQRKYKTAKDSYEQLLKE-----DDL-PVHLKA 160 (324)
Q Consensus 91 a~~~~~~~~-~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~---~~~~~~~A~~~~~~al~~-----~~~-~~~~~~ 160 (324)
-.++...++ ++.|+..+++.....|... +++..+.+.. ...+--+|+....++++. ... +.+...
T Consensus 255 l~~~~~t~~~~~~a~~~le~L~~~~p~~~-----~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 255 KSFIAITPSLVDFTIDYLKGLTKKDPIHD-----IYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHTCGGGHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHcccccHHHHHHHHHHHHHhhCCchh-----HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 334444555 6889999999887766543 3333333222 123345577777666532 111 222110
Q ss_pred -HHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy8160 161 -DICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNS 227 (324)
Q Consensus 161 -~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 227 (324)
......+.+...+..+=...++++-|+.+.++++...|.+-..|+.|+.+|..+|+|+.|+-.++-+
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 0111111111111100001569999999999999999999999999999999999999999988776
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.026 Score=42.35 Aligned_cols=51 Identities=10% Similarity=0.124 Sum_probs=28.8
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 200 SGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 200 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
+++..+.++ ...|+++.|.+..+.. ++...|..+|......|+ ++-|..+|
T Consensus 7 D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn-~~lAe~cy 57 (177)
T 3mkq_B 7 DPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGN-ASLAEMIY 57 (177)
T ss_dssp CHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred ChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCC-hHHHHHHH
Confidence 344444444 4456666666655443 345566666666666666 66666666
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.29 E-value=0.032 Score=49.52 Aligned_cols=79 Identities=13% Similarity=0.072 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHh
Q psy8160 162 ICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSI 241 (324)
Q Consensus 162 ~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 241 (324)
.+..+|.+.+. ...+..|..+|.+|..+.|.++..+..||.+....|+.-+|+-+|-+++......+.++.++
T Consensus 154 ~l~~LGDL~RY-------~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL 226 (497)
T 1ya0_A 154 CLVHLGDIARY-------RNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNL 226 (497)
T ss_dssp HHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHH
T ss_pred HHHHcccHHHH-------HHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHH
Confidence 55666777655 23678999999999999999999999999999999999999999999999888899999999
Q ss_pred HHHHhh
Q psy8160 242 GNKDFS 247 (324)
Q Consensus 242 g~~~~~ 247 (324)
..++..
T Consensus 227 ~~~f~~ 232 (497)
T 1ya0_A 227 QKALSK 232 (497)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888764
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.25 Score=36.54 Aligned_cols=172 Identities=17% Similarity=0.181 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCc-------------
Q psy8160 52 EVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCT------------- 118 (324)
Q Consensus 52 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~------------- 118 (324)
+...-++.+.+..|.|..|+-++. .-+.+....-.+.+|....+|..|+.++++.+...-+..
T Consensus 34 eY~lL~~I~LyyngEY~R~Lf~L~----~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd 109 (242)
T 3kae_A 34 EYRMLMSIVLYLNGEYTRALFHLH----KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVD 109 (242)
T ss_dssp CTHHHHHHHHHHTTCHHHHHHHHH----TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCC
T ss_pred HHHhhhhhhhhhcchHhHHHHHHH----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeec
Confidence 456778888899999998887776 455566677788899999999999999999984322211
Q ss_pred -ccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHh-----h--------hhhcccchhHH
Q psy8160 119 -FTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHC-----I--------DTLGEKSHRET 184 (324)
Q Consensus 119 -~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~-----~--------~~~~~~~~~~~ 184 (324)
..+.-.+..+|.+..+.|+-++|+.+|....... |-... .-+ .++.. . ...|.....+.
T Consensus 110 ~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~--~lf~~---vEn--liyeN~vp~~~d~~~i~~~~~~~i~~~y~~ 182 (242)
T 3kae_A 110 PGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKS--FLFSP---VEN--LLLENKVPQKRDKENVRQTGRRGIEEEYVS 182 (242)
T ss_dssp TTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHH---HHH--HHHTTCCCCCC-----------CHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCc--cccch---HHH--HHhhcCCCcccchHHHHhhhhccchhhhhh
Confidence 1222345567999999999999999999887765 32110 000 01100 0 00000001111
Q ss_pred HHHH--------HHHHHhhhCCccHHHH-HHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q psy8160 185 LAIH--------CLQKSIEADPKSGQSL-YLLGRCFAAVGKVHDAFLAYRNSVEKSEGN 234 (324)
Q Consensus 185 ~A~~--------~~~~al~~~~~~~~~~-~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 234 (324)
.... ..++-.+.-|.-...+ -.-+..++..|-.+++..+|....+.+|..
T Consensus 183 d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~F 241 (242)
T 3kae_A 183 DSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPMF 241 (242)
T ss_dssp HHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTT
T ss_pred hHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCCc
Confidence 1111 1222222334433332 244677889999999999999999998863
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.49 Score=41.24 Aligned_cols=110 Identities=16% Similarity=0.018 Sum_probs=75.8
Q ss_pred CCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchh
Q psy8160 80 DASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK 159 (324)
Q Consensus 80 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 159 (324)
+..-..+...+|..|...|+++.|.+.|.++....... ..+.+++..+..++...+++..+...+.++-.......+..
T Consensus 127 e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~-~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~ 205 (429)
T 4b4t_R 127 ELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIST-GAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWE 205 (429)
T ss_dssp CCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCC-CSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHH
Confidence 34445567779999999999999999999987665443 35668888888888899999999999998865432122211
Q ss_pred --hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhC
Q psy8160 160 --ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEAD 197 (324)
Q Consensus 160 --~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 197 (324)
.......|.++.. .++|..|-..|..++...
T Consensus 206 ~~~~lk~~~gl~~l~-------~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 206 RRNRYKTYYGIHCLA-------VRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHHHHHHGGGG-------TSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHH-------hChHHHHHHHHHHHhccC
Confidence 2222233333322 448889988888877654
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.29 E-value=0.12 Score=45.87 Aligned_cols=77 Identities=8% Similarity=-0.007 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Q psy8160 53 VHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHL 131 (324)
Q Consensus 53 ~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~ 131 (324)
.+..||.+......++.|..+|.+|+ +.|+++..+..+|.+....|+.-+|+-+|.+++....+.. .+..++...
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~----~a~~nL~~~ 229 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFP----AASTNLQKA 229 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCH----HHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCCh----hHHHHHHHH
Confidence 45678888888889999999999999 9999999999999999999999999999999987655554 455566555
Q ss_pred HH
Q psy8160 132 HE 133 (324)
Q Consensus 132 ~~ 133 (324)
+.
T Consensus 230 f~ 231 (497)
T 1ya0_A 230 LS 231 (497)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=95.21 E-value=0.64 Score=34.38 Aligned_cols=72 Identities=18% Similarity=0.178 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHc--c---------------CCCCHHH-HHHhHH
Q psy8160 182 RETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVE--K---------------SEGNADT-WCSIGN 243 (324)
Q Consensus 182 ~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~---------------~p~~~~~-~~~lg~ 243 (324)
++..|+..+.+ -+...+.+.-+.||...+++..|+.++++.++ . +|.+.+. +..+|.
T Consensus 48 EY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~ 122 (242)
T 3kae_A 48 EYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGD 122 (242)
T ss_dssp CHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHH
T ss_pred hHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHH
Confidence 55555554432 13344455555666666666666666666551 1 1222222 233556
Q ss_pred HHhhcCCCHHHHHHHH
Q psy8160 244 KDFSNNSNREDYHQAL 259 (324)
Q Consensus 244 ~~~~~~~~~~~A~~~~ 259 (324)
++.+.|. -++|+.+|
T Consensus 123 lltq~g~-r~EaI~y~ 137 (242)
T 3kae_A 123 LCTLSGY-REEGIGHY 137 (242)
T ss_dssp HHHHTTC-HHHHHHHH
T ss_pred HHHHhcC-HHHhhhHh
Confidence 6666666 66666555
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.16 Score=43.71 Aligned_cols=77 Identities=10% Similarity=0.025 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHHhhhCCccH----------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHH
Q psy8160 182 RETLAIHCLQKSIEADPKSG----------------------QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWC 239 (324)
Q Consensus 182 ~~~~A~~~~~~al~~~~~~~----------------------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 239 (324)
+.+.|...+.+++.+..... .+...++..+...|++.+|+..+..++..+|-+..+|.
T Consensus 130 ~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~ 209 (388)
T 2ff4_A 130 RFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWT 209 (388)
T ss_dssp CHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 56677777777776642111 34445677888999999999999999999999999999
Q ss_pred HhHHHHhhcCCCHHHHHHHH
Q psy8160 240 SIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 240 ~lg~~~~~~~~~~~~A~~~~ 259 (324)
.+-.++...|+ ..+|+..|
T Consensus 210 ~lm~al~~~Gr-~~~Al~~y 228 (388)
T 2ff4_A 210 QLITAYYLSDR-QSDALGAY 228 (388)
T ss_dssp HHHHHHHTTTC-HHHHHHHH
T ss_pred HHHHHHHHcCC-HHHHHHHH
Confidence 99999999999 99999988
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.92 E-value=0.16 Score=44.28 Aligned_cols=101 Identities=14% Similarity=-0.036 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHh-cCCC---CchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCC--cccHHHHH
Q psy8160 52 EVHLRLGLMFKVNNEYDSALKHLTLCL-IDAS---PCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPC--TFTKLEVR 125 (324)
Q Consensus 52 ~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~--~~~~~~~~ 125 (324)
.++..+|..|...|+++.|.+.|.++. ...+ ....+.....++...+++..+...+.++-...... +.......
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 367899999999999999999999987 3222 23444556778888999999999999985543222 22333445
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHhcC
Q psy8160 126 FHIAHLHEVQRKYKTAKDSYEQLLKED 152 (324)
Q Consensus 126 ~~la~~~~~~~~~~~A~~~~~~al~~~ 152 (324)
...|..+...++|..|-..|-.+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 556788888999999999999887665
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.16 Score=38.02 Aligned_cols=69 Identities=13% Similarity=0.049 Sum_probs=48.6
Q ss_pred hhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC--------CCCHHHHHHhHHHHhhcCCCH
Q psy8160 181 HRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKS--------EGNADTWCSIGNKDFSNNSNR 252 (324)
Q Consensus 181 ~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~~~~~ 252 (324)
|+++.|.+..+.. ++...|..||......|+++-|..+|+++-..+ ..+.+-+..++.+....|+ +
T Consensus 19 g~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~~~g~-~ 92 (177)
T 3mkq_B 19 GNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQTRED-F 92 (177)
T ss_dssp TCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTC-H
T ss_pred CCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHHHCcc-H
Confidence 4888898887764 578899999999999999999999999874432 2233444445554444444 4
Q ss_pred HHH
Q psy8160 253 EDY 255 (324)
Q Consensus 253 ~~A 255 (324)
.-|
T Consensus 93 n~a 95 (177)
T 3mkq_B 93 GSM 95 (177)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=94.74 E-value=0.74 Score=45.57 Aligned_cols=98 Identities=10% Similarity=0.020 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHh--cCCCC----------------------chhhHHHHHHHHhcccHHHHHHH
Q psy8160 51 NEVHLRLGLMFKVNNEYDSALKHLTLCL--IDASP----------------------CTFTKLEGLMFKVNNEYDSALKH 106 (324)
Q Consensus 51 ~~~~~~lg~~~~~~~~~~~A~~~~~~al--~~~~~----------------------~~~~~~la~~~~~~~~~~~A~~~ 106 (324)
+...|-+|.++...|++++|..+|+++- ..... ...+.-...++...+-++.++++
T Consensus 842 ~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~f 921 (1139)
T 4fhn_B 842 PIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEF 921 (1139)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3356889999999999999999999985 21111 01233357788889999999999
Q ss_pred HHHHHHhcCCCcc-cHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q psy8160 107 LTLCLIDASPCTF-TKLEVRFHIAHLHEVQRKYKTAKDSYEQL 148 (324)
Q Consensus 107 ~~~~l~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a 148 (324)
-+.++...+.... .....|.++=..+...|+|++|...+...
T Consensus 922 a~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 922 SLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred HHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 9999987654442 23346778888888999999998877554
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=94.73 E-value=1.5 Score=36.19 Aligned_cols=95 Identities=6% Similarity=-0.157 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhc---CCCHHHHHHHHH
Q psy8160 184 TLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSN---NSNREDYHQALN 260 (324)
Q Consensus 184 ~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---~~~~~~A~~~~~ 260 (324)
.+|+.+-.+.-...-.+|+.+..+|..+...|++.+|..+|-. .+.++++....+-.-.... |. ..++ ..
T Consensus 117 ~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~---~~~~s~~~~a~~l~~w~~~~~~~~-~~e~-dl-- 189 (312)
T 2wpv_A 117 TGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML---GTHDSMIKYVDLLWDWLCQVDDIE-DSTV-AE-- 189 (312)
T ss_dssp HHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT---SCHHHHHHHHHHHHHHHHHTTCCC-HHHH-HH--
T ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh---CCCccHHHHHHHHHHHHHhcCCCC-cchH-HH--
Confidence 3455554443222335789999999999999999999998842 2222344443333222333 44 4443 22
Q ss_pred HHHhhHH-HHHHcCCCCcchHHHHHHHhh
Q psy8160 261 KYRDLGD-FLVINNIPTSNNNRQCYNSYS 288 (324)
Q Consensus 261 ~~~~lg~-~~~~~~~~~~~~A~~~~~~al 288 (324)
+...+. .|.-.++... |...|....
T Consensus 190 -f~~RaVL~yL~l~n~~~--A~~~~~~f~ 215 (312)
T 2wpv_A 190 -FFSRLVFNYLFISNISF--AHESKDIFL 215 (312)
T ss_dssp -HHHHHHHHHHHTTBHHH--HHHHHHHHH
T ss_pred -HHHHHHHHHHHhcCHHH--HHHHHHHHH
Confidence 222222 1334566666 666665543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.52 E-value=0.46 Score=41.62 Aligned_cols=100 Identities=16% Similarity=0.080 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHh-cC-CC-C----chhhHHHHHHHHhcccHHHHHHHHHHHHH---hcCCCcccH
Q psy8160 52 EVHLRLGLMFKVNNEYDSALKHLTLCL-ID-AS-P----CTFTKLEGLMFKVNNEYDSALKHLTLCLI---DASPCTFTK 121 (324)
Q Consensus 52 ~~~~~lg~~~~~~~~~~~A~~~~~~al-~~-~~-~----~~~~~~la~~~~~~~~~~~A~~~~~~~l~---~~~~~~~~~ 121 (324)
.+...|+.++...|++.+|.+.+.... .- .. + ...+.....++...+++..|...++++.. ..+..+..+
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk 217 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLK 217 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHH
Confidence 456789999999999999999999877 21 11 1 23444468899999999999999998742 233333345
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhc
Q psy8160 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKE 151 (324)
Q Consensus 122 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 151 (324)
...+...|.++...++|.+|-.+|..+...
T Consensus 218 ~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 218 LEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 566777899999999999999999998764
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.27 E-value=0.34 Score=42.84 Aligned_cols=132 Identities=14% Similarity=0.066 Sum_probs=57.6
Q ss_pred HHhcccHHHHHHHHHHHHH--hcC-CC----cccHHHHHHHHHHHHHHhhcHHHHH----------HHHHHHHhcCCC--
Q psy8160 94 FKVNNEYDSALKHLTLCLI--DAS-PC----TFTKLEVRFHIAHLHEVQRKYKTAK----------DSYEQLLKEDDL-- 154 (324)
Q Consensus 94 ~~~~~~~~~A~~~~~~~l~--~~~-~~----~~~~~~~~~~la~~~~~~~~~~~A~----------~~~~~al~~~~~-- 154 (324)
+..++++++|.++-...+. .-. .+ ....+.+||..+.++...|+..... ..+-.++.....
T Consensus 146 L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~ 225 (523)
T 4b4t_S 146 LWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKH 225 (523)
T ss_dssp ---------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCS
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhccc
Confidence 3456788888887765541 111 00 1122356777777777777654421 122222221110
Q ss_pred CCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc-------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy8160 155 PVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS-------GQSLYLLGRCFAAVGKVHDAFLAYRNS 227 (324)
Q Consensus 155 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~lg~~~~~~~~~~~A~~~~~~a 227 (324)
.....+.++..+-+.|.. .+.+++|..+..++. .|.+ ...+|.+|.++...++|.+|..++..|
T Consensus 226 D~~~qa~l~nllLRnYL~-------~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 226 DNETKAMLINLILRDFLN-------NGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp SSCHHHHHHHHHHHHHHH-------SSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHc-------cCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 223447777777777766 347899999999984 3322 356788999999999999999999999
Q ss_pred HccCCCC
Q psy8160 228 VEKSEGN 234 (324)
Q Consensus 228 l~~~p~~ 234 (324)
+...|.+
T Consensus 297 ~rkap~~ 303 (523)
T 4b4t_S 297 IRKAPHN 303 (523)
T ss_dssp TSSCSCS
T ss_pred HHhCCcc
Confidence 9988765
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=94.25 E-value=1 Score=36.15 Aligned_cols=57 Identities=16% Similarity=0.155 Sum_probs=38.5
Q ss_pred HhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCc
Q psy8160 95 KVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVH 157 (324)
Q Consensus 95 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 157 (324)
...|+.++|++..+..++..|.+. +....+-.++...|++++|..-++.+.+++ |..
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~da----~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~--p~~ 64 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPKDA----SLRSSFIELLCIDGDFERADEQLMQSIKLF--PEY 64 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGG
T ss_pred HhCCCHHHHHHHHHHHHHhCCcCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--chh
Confidence 345666667776666777666665 556666666777777777777777777777 554
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.13 E-value=2.7 Score=36.70 Aligned_cols=193 Identities=13% Similarity=0.062 Sum_probs=113.3
Q ss_pred HHHHHHHHHHhc---cCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHH----HHHHhcccHH-
Q psy8160 31 IKAIKTFQQLLY---VDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEG----LMFKVNNEYD- 101 (324)
Q Consensus 31 ~~A~~~~~~~l~---~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la----~~~~~~~~~~- 101 (324)
+.|++.+..+-+ ...+.+....+...+..++...++|+...+++.... .....-.+...+- .........+
T Consensus 33 ~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d~ 112 (445)
T 4b4t_P 33 NSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDL 112 (445)
T ss_dssp HHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTHH
T ss_pred HHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhH
Confidence 556665533322 233334456678888889999999998877775433 2111111111110 0111111111
Q ss_pred -HHHHHHHHHHHhcCCCcc---cHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC-C-CCCchhhHHHHHHHHHHHhhhh
Q psy8160 102 -SALKHLTLCLIDASPCTF---TKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKED-D-LPVHLKADICRQLGWMYHCIDT 175 (324)
Q Consensus 102 -~A~~~~~~~l~~~~~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~-~~~~~~~~~~~~l~~~~~~~~~ 175 (324)
.-+...+..-.......+ ..+.+...|+.++...|++.+|...+..+.... + .+.....+.+....+++..
T Consensus 113 ~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~--- 189 (445)
T 4b4t_P 113 NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL--- 189 (445)
T ss_dssp HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH---
Confidence 111111111111111111 245677889999999999999999998876432 1 1222235566666777755
Q ss_pred hcccchhHHHHHHHHHHHhh---hCCccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q psy8160 176 LGEKSHRETLAIHCLQKSIE---ADPKSG----QSLYLLGRCFAAVGKVHDAFLAYRNSVEK 230 (324)
Q Consensus 176 ~~~~~~~~~~A~~~~~~al~---~~~~~~----~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 230 (324)
.+++.+|...+.++.. ..+..+ ..+...|.++...++|.+|-.+|..+...
T Consensus 190 ----~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 190 ----KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp ----HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred ----CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4589999999998742 223333 46677899999999999999999999764
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=93.63 E-value=1.8 Score=40.72 Aligned_cols=161 Identities=11% Similarity=-0.029 Sum_probs=90.1
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Q psy8160 55 LRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEV 134 (324)
Q Consensus 55 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~ 134 (324)
..+...+...|.++.|++..+ +| ...-.+....|++++|.+..+.. .+ ...|..+|..+..
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~----~~------~~~f~~~l~~~~~~~A~~~~~~~-----~~----~~~W~~la~~al~ 693 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP----DQ------DQKFELALKVGQLTLARDLLTDE-----SA----EMKWRALGDASLQ 693 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC----CH------HHHHHHHHHHTCHHHHHHHHTTC-----CC----HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCC----Cc------chheehhhhcCCHHHHHHHHHhh-----Cc----HhHHHHHHHHHHH
Confidence 555666677788887776554 11 11133445678888888854321 12 2678889999999
Q ss_pred hhcHHHHHHHHHHHHhcCC------CCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHH
Q psy8160 135 QRKYKTAKDSYEQLLKEDD------LPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLG 208 (324)
Q Consensus 135 ~~~~~~A~~~~~~al~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg 208 (324)
.++++.|+.+|.++-.... ...+ .+.+..++..... .+++..|...|.+. - +.+ .--
T Consensus 694 ~~~~~~A~~~y~~~~d~~~l~~l~~~~~~--~~~~~~~~~~a~~-------~~~~~~A~~~~~~~--g---~~~---~a~ 756 (814)
T 3mkq_A 694 RFNFKLAIEAFTNAHDLESLFLLHSSFNN--KEGLVTLAKDAET-------TGKFNLAFNAYWIA--G---DIQ---GAK 756 (814)
T ss_dssp TTCHHHHHHHHHHHTCHHHHHHHHHHTTC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHH--T---CHH---HHH
T ss_pred cCCHHHHHHHHHHccChhhhHHHHHHcCC--HHHHHHHHHHHHH-------cCchHHHHHHHHHc--C---CHH---HHH
Confidence 9999999998887522110 0111 1123333333322 33566666555442 1 111 123
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHhHHHHhhcCCCHHHH
Q psy8160 209 RCFAAVGKVHDAFLAYRNSVEKSEGN---ADTWCSIGNKDFSNNSNREDY 255 (324)
Q Consensus 209 ~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~~A 255 (324)
.+|...+++++|+...++ ..|.. +......+.-+...|+ .+.|
T Consensus 757 ~~~~~~~~~~~A~~lA~~---~~~~~~~i~~~~~~~~~~L~~~~~-~~~a 802 (814)
T 3mkq_A 757 DLLIKSQRFSEAAFLGST---YGLGDNEVNDIVTKWKENLILNGK-NTVS 802 (814)
T ss_dssp HHHHHTTCHHHHHHHHHH---TTCCHHHHHHHHHHHHHHHHTTTC-HHHH
T ss_pred HHHHHcCChHHHHHHHHH---hCCChHHHHHHHHHHHHHHHhccc-hhHH
Confidence 567778888888876654 44433 3444455555566665 5433
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.63 E-value=1.7 Score=37.17 Aligned_cols=90 Identities=16% Similarity=0.041 Sum_probs=65.0
Q ss_pred HHhhcHHHHHHHHHHHHhcCCCC------Cchhh------------HHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHh
Q psy8160 133 EVQRKYKTAKDSYEQLLKEDDLP------VHLKA------------DICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSI 194 (324)
Q Consensus 133 ~~~~~~~~A~~~~~~al~~~~~~------~~~~~------------~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al 194 (324)
...|+.+.|...+++++.+-.-| ..... .+...++..+. ..|++.+++..+..++
T Consensus 126 ~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l-------~~g~~~~a~~~l~~~~ 198 (388)
T 2ff4_A 126 AAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEI-------ACGRASAVIAELEALT 198 (388)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHH-------HTTCHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-------HCCCHHHHHHHHHHHH
Confidence 34578888888888888774211 10000 01111222221 2558999999999999
Q ss_pred hhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q psy8160 195 EADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVE 229 (324)
Q Consensus 195 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 229 (324)
..+|.+..+|..+-.++...|+..+|+..|+++..
T Consensus 199 ~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 199 FEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988754
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=92.98 E-value=2.1 Score=34.27 Aligned_cols=112 Identities=8% Similarity=-0.056 Sum_probs=81.4
Q ss_pred chhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHH-
Q psy8160 180 SHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQA- 258 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~- 258 (324)
.+..++|+......++.+|.+.+....+-..+.-.|+++.|...++.+.+++|.....-..+..+ =. -+.+...
T Consensus 10 ~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l----I~-aE~~R~~v 84 (273)
T 1zbp_A 10 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL----VK-AAQARKDF 84 (273)
T ss_dssp TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH----HH-HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH----HH-HHHHHHHH
Confidence 45899999999999999999999999999999999999999999999999999865432111111 00 1111111
Q ss_pred H------------HHH---HhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhh
Q psy8160 259 L------------NKY---RDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHIN 298 (324)
Q Consensus 259 ~------------~~~---~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 298 (324)
| ..| .--+......|+.++ |...-.+|++.-|..+...
T Consensus 85 faG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~--A~~lr~~A~e~ap~~~G~~ 137 (273)
T 1zbp_A 85 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQ--VSELALQIEELRQEKGFLA 137 (273)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHH--HHHHHHHHHHHCCCCCEEE
T ss_pred HcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHH--HHHHHHHHHhcCcccCCCc
Confidence 1 222 223444556789999 9999999999888766533
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=92.95 E-value=0.77 Score=43.88 Aligned_cols=241 Identities=12% Similarity=0.031 Sum_probs=121.2
Q ss_pred HHHHHHHHHHhccC--CCcccchHHHHHHHHHHHHhccHHHHHHHHHHHhcCCC-------Cc----hhhHHHHHHHHhc
Q psy8160 31 IKAIKTFQQLLYVD--PSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDAS-------PC----TFTKLEGLMFKVN 97 (324)
Q Consensus 31 ~~A~~~~~~~l~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~-------~~----~~~~~la~~~~~~ 97 (324)
++++....+.+... .+......+.+.+|.++...++ +++..+...+.+++ .. .+...+|.++.-.
T Consensus 391 ~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS 468 (963)
T 4ady_A 391 LEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGS 468 (963)
T ss_dssp TTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCC
Confidence 56666666655421 1111124467888888776664 57887777772222 11 2233466666655
Q ss_pred ccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhc
Q psy8160 98 NEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLG 177 (324)
Q Consensus 98 ~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 177 (324)
++ +++.+.+..++..... .....+-+.+|.++...|+-+-....+..+.... .+.....+-..+|.+++.
T Consensus 469 ~~-eev~e~L~~~L~dd~~--~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~--~e~vrR~aalgLGll~~g----- 538 (963)
T 4ady_A 469 AN-IEVYEALKEVLYNDSA--TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ--HGNITRGLAVGLALINYG----- 538 (963)
T ss_dssp CC-HHHHHHHHHHHHTCCH--HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHTTT-----
T ss_pred CC-HHHHHHHHHHHhcCCH--HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC--cHHHHHHHHHHHHhhhCC-----
Confidence 54 3555656666653322 1122456677888888887655555555544432 333333345555555532
Q ss_pred ccchhHHHHHHHHHHHhhhCCccHHH----HHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHH
Q psy8160 178 EKSHRETLAIHCLQKSIEADPKSGQS----LYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNRE 253 (324)
Q Consensus 178 ~~~~~~~~A~~~~~~al~~~~~~~~~----~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~ 253 (324)
+.+.+....+. +... .++.. -+.+|..|...|+...-...++.+..-..++......+|......|+ .+
T Consensus 539 ----~~e~~~~li~~-L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~-~e 611 (963)
T 4ady_A 539 ----RQELADDLITK-MLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRD-YT 611 (963)
T ss_dssp ----CGGGGHHHHHH-HHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS-CS
T ss_pred ----ChHHHHHHHHH-HHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCC-HH
Confidence 44434444333 3322 23333 34567778888886544446666654332232222233333334444 43
Q ss_pred HHHHHH-------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCCh
Q psy8160 254 DYHQAL-------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASC 294 (324)
Q Consensus 254 ~A~~~~-------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (324)
.+.+.+ .+-..||.+....+ ..+ +++.+..... |+++
T Consensus 612 ~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~-~~~--aid~L~~L~~-D~d~ 661 (963)
T 4ady_A 612 TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKG-LQS--AIDVLDPLTK-DPVD 661 (963)
T ss_dssp SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSC-CHH--HHHHHHHHHT-CSSH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCC-cHH--HHHHHHHHcc-CCCH
Confidence 333332 33344554442222 245 7777776653 5543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=92.27 E-value=5 Score=39.76 Aligned_cols=52 Identities=6% Similarity=-0.058 Sum_probs=32.1
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q psy8160 90 EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLL 149 (324)
Q Consensus 90 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 149 (324)
+...+...+.++-+.+. +.-.+.++ -..+.+|.++...|++++|..+|+++-
T Consensus 818 l~~~l~~~~~~~~~~~l----~~~~~~~~----~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQL----IGWLNSDP----IAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HHHHHHHHSCTTHHHHH----HHHSCCCH----HHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhhhHHHHHHH----hhhccCCc----HHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 44445555666555542 22222222 345778888888888888888888763
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=91.04 E-value=4.7 Score=38.66 Aligned_cols=224 Identities=11% Similarity=0.076 Sum_probs=113.3
Q ss_pred HHHHHHHHHHhccCCC-------cccchHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCc---hhhHHHHHHHHhcccH
Q psy8160 31 IKAIKTFQQLLYVDPS-------YLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPC---TFTKLEGLMFKVNNEY 100 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~-------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~la~~~~~~~~~ 100 (324)
++++..+...+..+.. ......+...||.++.-.++ +++.+.+..++.+.+.. .+...+|.++.-.|+-
T Consensus 428 ~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~ 506 (963)
T 4ady_A 428 RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP 506 (963)
T ss_dssp HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH
T ss_pred HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH
Confidence 5688877777754420 01112356788888887766 45677777777333221 2344578888888887
Q ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccc
Q psy8160 101 DSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKS 180 (324)
Q Consensus 101 ~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 180 (324)
+.....+..+.... .. ...-...+|..+...|+.+.+-...+.+.... ....+..+...+|..|.. .
T Consensus 507 ~ai~~LL~~~~e~~--~e--~vrR~aalgLGll~~g~~e~~~~li~~L~~~~--dp~vRygaa~alglAyaG-------T 573 (963)
T 4ady_A 507 EAIHDMFTYSQETQ--HG--NITRGLAVGLALINYGRQELADDLITKMLASD--ESLLRYGGAFTIALAYAG-------T 573 (963)
T ss_dssp HHHHHHHHHHHHCS--CH--HHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS--CHHHHHHHHHHHHHHTTT-------S
T ss_pred HHHHHHHHHHhccC--cH--HHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHhcC-------C
Confidence 77776666655422 11 11111223333445677666665655544433 333333344445555532 4
Q ss_pred hhHHHHHH-HHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHH----hHHHHhhcCCCHHHH
Q psy8160 181 HRETLAIH-CLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCS----IGNKDFSNNSNREDY 255 (324)
Q Consensus 181 ~~~~~A~~-~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----lg~~~~~~~~~~~~A 255 (324)
|+. .|++ .+..+.+...++..-.--+|......|+.+.+...+..... ..++.+.+. +|.+....+ ..++
T Consensus 574 Gn~-~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~--~~~a 648 (963)
T 4ady_A 574 GNN-SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKG--LQSA 648 (963)
T ss_dssp CCH-HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSC--CHHH
T ss_pred CCH-HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCC--cHHH
Confidence 453 4555 55555433222332222334444445555444444433322 234554443 344333333 3566
Q ss_pred HHHH-------------HHHHhhHHHHHHcC
Q psy8160 256 HQAL-------------NKYRDLGDFLVINN 273 (324)
Q Consensus 256 ~~~~-------------~~~~~lg~~~~~~~ 273 (324)
+..+ .+...||.+-...+
T Consensus 649 id~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtn 679 (963)
T 4ady_A 649 IDVLDPLTKDPVDFVRQAAMIALSMILIQQT 679 (963)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHhcCCc
Confidence 6665 45566666665444
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.12 E-value=6.1 Score=38.36 Aligned_cols=101 Identities=11% Similarity=-0.076 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHh-c----CCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHH
Q psy8160 53 VHLRLGLMFKVNNEYDSALKHLTLCL-I----DASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFH 127 (324)
Q Consensus 53 ~~~~lg~~~~~~~~~~~A~~~~~~al-~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 127 (324)
.+..+-..|.+.|+.++|.+.|.... . -.-+...+..+-.-|...|+.++|.+.|++.....-... ...+..
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PD---vvTYnt 205 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD---LLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC---HHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc---HHHHHH
Confidence 46677788999999999999996643 1 233455667777888999999999999999876533222 245666
Q ss_pred HHHHHHHhhcH-HHHHHHHHHHHhcCCCCC
Q psy8160 128 IAHLHEVQRKY-KTAKDSYEQLLKEDDLPV 156 (324)
Q Consensus 128 la~~~~~~~~~-~~A~~~~~~al~~~~~~~ 156 (324)
+-.++...|+. ++|.+.|++.....-.|+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD 235 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQ 235 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCC
Confidence 66677788874 788899999887764444
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.56 E-value=0.22 Score=44.09 Aligned_cols=113 Identities=6% Similarity=-0.011 Sum_probs=52.8
Q ss_pred chhHHHHHHHHHHHh-----------hhCCccHHHHHHHHHHHHHcCCHHHHH--------------HHHHHHH-ccCCC
Q psy8160 180 SHRETLAIHCLQKSI-----------EADPKSGQSLYLLGRCFAAVGKVHDAF--------------LAYRNSV-EKSEG 233 (324)
Q Consensus 180 ~~~~~~A~~~~~~al-----------~~~~~~~~~~~~lg~~~~~~~~~~~A~--------------~~~~~al-~~~p~ 233 (324)
.+++++|..+-...+ .+++-.+.+|+..+.++...|+..... ..++.|. ..|+.
T Consensus 149 ~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~ 228 (523)
T 4b4t_S 149 SKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNE 228 (523)
T ss_dssp ------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSSSC
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcc
Confidence 336777777665543 124445678998888888887765432 1222221 22332
Q ss_pred C-HHHHHHhHHHHhhcCCCHHHHHHHH----------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChh
Q psy8160 234 N-ADTWCSIGNKDFSNNSNREDYHQAL----------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCK 295 (324)
Q Consensus 234 ~-~~~~~~lg~~~~~~~~~~~~A~~~~----------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (324)
. +..+..+-..|...+. +++|.... .-++.+|.++.-+++|.+ |.+++..|+..-|.+.
T Consensus 229 ~qa~l~nllLRnYL~~~~-y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~e--A~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 229 TKAMLINLILRDFLNNGE-VDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYST--ANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHHHHHHHSSC-STTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHTSSCSCSS
T ss_pred hhHHHHHHHHHHHHccCc-HHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHH--HHHHHHHHHHhCCcch
Confidence 2 4567778888999999 99998877 456789999999999999 9999999999887654
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=89.40 E-value=13 Score=34.06 Aligned_cols=122 Identities=7% Similarity=-0.013 Sum_probs=70.1
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHH
Q psy8160 129 AHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLG 208 (324)
Q Consensus 129 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg 208 (324)
+.-.....+.+.|...+....................+++-... .+...++...+.+.....+++...-...+
T Consensus 221 ~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~e~~~r 293 (618)
T 1qsa_A 221 AFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMG-------NDVTDEQAKWRDDAIMRSQSTSLIERRVR 293 (618)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCS-------TTCCHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHH-------cCCChHHHHHHHhccccCCChHHHHHHHH
Confidence 43344556778888888776544321211111222222222211 11245566667665544433332222233
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 209 RCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 209 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
..+..|+++.|..+|.+.-...+..+...+.+|..+...|+ .++|...|
T Consensus 294 -~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~-~~~a~~~~ 342 (618)
T 1qsa_A 294 -MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGR-EAEAKEIL 342 (618)
T ss_dssp -HHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred -HHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCC-HHHHHHHH
Confidence 34566899999998877655434567778888888889999 88888877
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.65 E-value=8.3 Score=37.43 Aligned_cols=77 Identities=9% Similarity=-0.026 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHHHhhh----CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc--CCCCHHHHHHhHHHHhhcCCCH-H
Q psy8160 181 HRETLAIHCLQKSIEA----DPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEK--SEGNADTWCSIGNKDFSNNSNR-E 253 (324)
Q Consensus 181 ~~~~~A~~~~~~al~~----~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~-~ 253 (324)
|+.++|...|.+..+. ..-+..+|..|-..+...|+.++|.+.|++.... .| +..++..+-.++.+.|+ . +
T Consensus 141 G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTYntLI~glcK~G~-~~e 218 (1134)
T 3spa_A 141 DQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSYAAALQCMGRQDQ-DAG 218 (1134)
T ss_dssp TCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHTC-CHH
T ss_pred CCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHhCCC-cHH
Confidence 3666777766553221 1224556666666666777777777777666543 24 44555555556666665 4 4
Q ss_pred HHHHHH
Q psy8160 254 DYHQAL 259 (324)
Q Consensus 254 ~A~~~~ 259 (324)
+|.+.|
T Consensus 219 ~A~~Ll 224 (1134)
T 3spa_A 219 TIERCL 224 (1134)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555555
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=83.84 E-value=26 Score=32.03 Aligned_cols=237 Identities=8% Similarity=-0.020 Sum_probs=126.4
Q ss_pred HHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcC
Q psy8160 36 TFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDAS 115 (324)
Q Consensus 36 ~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~ 115 (324)
-....+...|+.|....+....-......+++..-+..+.. .|.+..............|+..+|.....++.....
T Consensus 57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~---~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~ 133 (618)
T 1qsa_A 57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE---KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK 133 (618)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC---CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Confidence 44555666777665544444433444456777765554442 355555555566667777887777777776654332
Q ss_pred CCcc---------------cHHHHHHHHHHHHHHhhcHHHHHHHHHH-------------HHhcCCCCCchhhH------
Q psy8160 116 PCTF---------------TKLEVRFHIAHLHEVQRKYKTAKDSYEQ-------------LLKEDDLPVHLKAD------ 161 (324)
Q Consensus 116 ~~~~---------------~~~~~~~~la~~~~~~~~~~~A~~~~~~-------------al~~~~~~~~~~~~------ 161 (324)
..+. +..+++..+ ......|+...|...... ++..+ |......
T Consensus 134 ~~p~~c~~l~~~~~~~g~lt~~~~~~R~-~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~--p~~~~~~~~~~~~ 210 (618)
T 1qsa_A 134 SQPNACDKLFSVWRASGKQDPLAYLERI-RLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN--PNTVLTFARTTGA 210 (618)
T ss_dssp CCCTHHHHHHHHHHHTTCSCHHHHHHHH-HHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC--GGGHHHHHHHSCC
T ss_pred CCcHHHHHHHHHHHHCCCCCHHHHHHHH-HHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC--hHhHHHHHhccCC
Confidence 2211 111122221 223333444333322221 11112 2221100
Q ss_pred -----HHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHH----HHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q psy8160 162 -----ICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQ----SLYLLGRCFAAVGKVHDAFLAYRNSVEKSE 232 (324)
Q Consensus 162 -----~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 232 (324)
.....+..... ..+.+.|...+.......+-+.. .+..+|.-....+...++..++.++....+
T Consensus 211 ~~~~~~~~~~~~~rla-------r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~ 283 (618)
T 1qsa_A 211 TDFTRQMAAVAFASVA-------RQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ 283 (618)
T ss_dssp CHHHHHHHHHHHHHHH-------HHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC
T ss_pred ChhhHHHHHHHHHHHH-------hcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCC
Confidence 00011111111 23667888888776543333332 233344344444535677788877665444
Q ss_pred CCHHHHHHhHHHHhhcCCCHHHHHHHH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhh
Q psy8160 233 GNADTWCSIGNKDFSNNSNREDYHQAL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYST 289 (324)
Q Consensus 233 ~~~~~~~~lg~~~~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~ 289 (324)
++...-...+ .....|+ +..|...+ ...+-+|..+...|+.++ |...|+++..
T Consensus 284 ~~~~~e~~~r-~Alr~~d-~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~--a~~~~~~~a~ 347 (618)
T 1qsa_A 284 STSLIERRVR-MALGTGD-RRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAE--AKEILHQLMQ 347 (618)
T ss_dssp CHHHHHHHHH-HHHHHTC-HHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHH--HHHHHHHHHT
T ss_pred ChHHHHHHHH-HHHHCCC-HHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHH--HHHHHHHHhc
Confidence 3333323333 3456799 99999999 567889999999999999 9999999876
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=82.73 E-value=0.0015 Score=56.94 Aligned_cols=104 Identities=10% Similarity=0.058 Sum_probs=68.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH-------------------HHHHhhHHH
Q psy8160 208 GRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL-------------------NKYRDLGDF 268 (324)
Q Consensus 208 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-------------------~~~~~lg~~ 268 (324)
-..|...|-+++=+..++.++.+..-+....+.||.+|.+-. +++-.+++ ..|..+-.+
T Consensus 236 v~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY~--PeKlmEHlklf~sriNipKviracE~ahLW~ElvfL 313 (624)
T 3lvg_A 236 INYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK--PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFL 313 (624)
T ss_dssp GSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSSC--TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHH
Confidence 345667788888888899999888888899999998887654 45555555 567888888
Q ss_pred HHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhh----ccCChhhHHHHHHHHhh
Q psy8160 269 LVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFS----NNSNREDYHQALNKYRD 321 (324)
Q Consensus 269 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~----~~~~~~~~~~a~~~~~~ 321 (324)
|.+-.+++. |+. .+....+.++..-.|. +....+-|.+|+.=|-+
T Consensus 314 Y~~ydE~Dn--A~l------tMi~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~ 362 (624)
T 3lvg_A 314 YDKYEEYDN--AII------TMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLE 362 (624)
T ss_dssp HHHHTCHHH--HHH------TTTSCHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTT
T ss_pred HhcchhHHH--HHH------HHHhCChhhccHHHHHHHHHHcchHHHHHHHHHHHHH
Confidence 887777776 432 3322223333333222 22445667777765543
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=81.03 E-value=11 Score=36.40 Aligned_cols=109 Identities=12% Similarity=-0.003 Sum_probs=61.3
Q ss_pred HHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhc-C------------------CC
Q psy8160 57 LGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDA-S------------------PC 117 (324)
Q Consensus 57 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-~------------------~~ 117 (324)
+...+...+.++-|.+... --|.+....+.+|.++...|++++|..+|+++-..- . +.
T Consensus 816 l~~~L~~~~~~~~a~eL~~---~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~ 892 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIG---WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHH 892 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGG---GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTT
T ss_pred HHHHHHHhcHHHHHHHHHh---hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccc
Confidence 4444455555554433111 334444445666666666666666666666652110 0 00
Q ss_pred cccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC-CCchhhHHHHHHHH
Q psy8160 118 TFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDL-PVHLKADICRQLGW 168 (324)
Q Consensus 118 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~ 168 (324)
......-|..+..++...+-++.+++.-+.|+..-.. ......++|.++=.
T Consensus 893 ~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~ 944 (950)
T 4gq2_M 893 QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLK 944 (950)
T ss_dssp CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHH
Confidence 1111235678899999999999999999999965321 22233556655533
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 324 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 8e-10 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-04 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 6e-04 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 8e-04 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 1e-07 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 4e-04 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 0.001 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 0.003 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.0 bits (136), Expect = 8e-10
Identities = 37/213 (17%), Positives = 81/213 (38%), Gaps = 19/213 (8%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLE 90
AI F++ + +DP++L A ++ LG + K +D A+ L + +
Sbjct: 187 LAIHHFEKAVTLDPNFLDA---YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNL 243
Query: 91 GLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLK 150
++ D A+ I+ P + ++A+ + + A+D Y L
Sbjct: 244 ACVYYEQGLIDLAIDTYRRA-IELQP---HFPDAYCNLANALKEKGSVAEAEDCYNTAL- 298
Query: 151 EDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRC 210
+C + + + + A+ +K++E P+ + L
Sbjct: 299 ----------RLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV 348
Query: 211 FAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243
GK+ +A + Y+ ++ S AD + ++GN
Sbjct: 349 LQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 381
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.8 bits (94), Expect = 1e-04
Identities = 36/234 (15%), Positives = 63/234 (26%), Gaps = 25/234 (10%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEG 91
A + QL +P L L + D + TL +
Sbjct: 17 AAERHCMQLWRQEPDNTGV---LLLLSSIHFQCRRLDRSAHFSTLAI------------- 60
Query: 92 LMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKE 151
K N A +L + R + + Y +
Sbjct: 61 ---KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDM 117
Query: 152 DDLPVHLKA--DICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGR 209
+ + L + + L + R A C K+IE P + LG
Sbjct: 118 EGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGC 177
Query: 210 CFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYR 263
F A G++ A + +V D + ++GN + +A+ Y
Sbjct: 178 VFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGN----VLKEARIFDRAVAAYL 227
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.9 bits (89), Expect = 6e-04
Identities = 22/185 (11%), Positives = 52/185 (28%), Gaps = 19/185 (10%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLE 90
+A+ + + L + P++ H L ++ D A+ + +
Sbjct: 221 RAVAAYLRALSLSPNHAVV---HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNL 277
Query: 91 GLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLK 150
K A L + ++A++ Q + A Y + L+
Sbjct: 278 ANALKEKGSVAEAEDCYNTALRLCPTHADS----LNNLANIKREQGNIEEAVRLYRKALE 333
Query: 151 EDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRC 210
P A L + + + A+ +++I P + +G
Sbjct: 334 VF--PEF--AAAHSNLASVLQ-------QQGKLQEALMHYKEAIRISPTFADAYSNMGNT 382
Query: 211 FAAVG 215
+
Sbjct: 383 LKEMQ 387
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.5 bits (88), Expect = 8e-04
Identities = 22/196 (11%), Positives = 60/196 (30%), Gaps = 11/196 (5%)
Query: 126 FHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETL 185
+AH ++ A+ QL +++ P + + L ++ + R
Sbjct: 3 MELAHREYQAGDFEAAERHCMQLWRQE--PDN--TGVLLLLSSIHF-------QCRRLDR 51
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKD 245
+ H +I+ +P ++ LG + G++ +A YR+++ D + ++
Sbjct: 52 SAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAAL 111
Query: 246 FSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSN 305
+ ++ + D + + + + +
Sbjct: 112 VAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVA 171
Query: 306 NSNREDYHQALNKYRD 321
SN A +
Sbjct: 172 WSNLGCVFNAQGEIWL 187
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.6 bits (120), Expect = 1e-07
Identities = 20/286 (6%), Positives = 75/286 (26%), Gaps = 29/286 (10%)
Query: 29 LNIKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTK 88
+++++ + +Q + + L ++ + + + D K
Sbjct: 1 MSLQSAQYLRQAEVLKADMT---DSKLGPAEVWTSRQALQDLYQKML--VTDLEYALDKK 55
Query: 89 LEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQL 148
+E ++ N+ + + + L + + ++++ L Y +
Sbjct: 56 VEQDLW--NHAFKNQITTLQGQAKNRANPNRSEVQANLS-LFLEAASGFYTQLLQELCTV 112
Query: 149 LK---EDDLPVHLKADICRQLG------------------WMYHCIDTLGEKSHRETLAI 187
+ I + + + ++ + A
Sbjct: 113 FNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAE 172
Query: 188 HCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFS 247
+ + + P +GQ L ++ G Y S+ ++
Sbjct: 173 SYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232
Query: 248 NNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIAS 293
+R++ + F+ + + + + + +
Sbjct: 233 ALESRDEVKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEE 278
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.4 bits (91), Expect = 4e-04
Identities = 22/200 (11%), Positives = 45/200 (22%), Gaps = 18/200 (9%)
Query: 22 LQQFGKTLNIKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDA 81
Q I T Q + R+ + + Y L+ L
Sbjct: 57 EQDLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD 116
Query: 82 SPCTFTKLE-GLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKT 140
PC + G++ + +K + H+ + + +
Sbjct: 117 LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ------HCLVHLGDIARYRNQTSQ 170
Query: 141 AKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS 200
A+ Y + QL + I +SI
Sbjct: 171 AESYYRHAAQLV----PSNGQPYNQLAILAS-------SKGDHLTTIFYYCRSIAVKFPF 219
Query: 201 GQSLYLLGRCFAAVGKVHDA 220
+ L + + + D
Sbjct: 220 PAASTNLQKALSKALESRDE 239
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 37.7 bits (87), Expect = 0.001
Identities = 9/58 (15%), Positives = 17/58 (29%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243
A+ L ++I+A PK G A S++ + +
Sbjct: 15 ALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRH 72
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.3 bits (82), Expect = 0.003
Identities = 32/268 (11%), Positives = 65/268 (24%), Gaps = 40/268 (14%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEG 91
A+ F+ + DP ++ A LG N + A+ L CL +
Sbjct: 37 NAVLLFEAAVQQDPKHMEA---WQYLGTTQAENEQELLAISALRRCLELKPDNQTALMAL 93
Query: 92 LMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKE 151
+ N + + +P + A + + L
Sbjct: 94 AVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFL 153
Query: 152 DDLPVHLKADICRQLGWMYHCIDTLG---------------------------------- 177
+ + L A LG
Sbjct: 154 EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLG 213
Query: 178 ---EKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN 234
++ A+ ++++E P +S Y LG +G +A + ++ +
Sbjct: 214 ATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 273
Query: 235 ADTWCSIGNKDFSNNSNREDYHQALNKY 262
G + S L +
Sbjct: 274 RGPRGEGGAMSENIWSTLRLALSMLGQS 301
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 324 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.98 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.97 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.93 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.91 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.9 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.89 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.88 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.86 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.81 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.79 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.76 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.75 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.75 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.73 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.73 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.71 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.71 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.69 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.69 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.68 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.67 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.64 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.63 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.63 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.63 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.62 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.6 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.59 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.58 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.58 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.58 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.57 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.57 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.55 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.54 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.53 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.53 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.48 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.47 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.46 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.46 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.45 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.32 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.31 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.21 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 99.19 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.18 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.94 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.93 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.69 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.68 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 98.52 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 98.45 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.23 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 96.11 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.09 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.08 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 94.98 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.8e-32 Score=236.14 Aligned_cols=283 Identities=15% Similarity=0.136 Sum_probs=212.5
Q ss_pred hhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhc
Q psy8160 21 KLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVN 97 (324)
Q Consensus 21 ~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~ 97 (324)
.+++..+..+ ++|++.|+++++.+|+ +.++++.+|.++...|++++|+..|++++ .+|.+..++..+|.++...
T Consensus 4 ~la~~~~~~G~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 80 (388)
T d1w3ba_ 4 ELAHREYQAGDFEAAERHCMQLWRQEPD---NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKER 80 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Confidence 3444444333 7888888888888875 34577888888888888888888888888 8888888888888888888
Q ss_pred ccHHHHHHHHHHHHHhcCCCcc----------------------------------------------------------
Q psy8160 98 NEYDSALKHLTLCLIDASPCTF---------------------------------------------------------- 119 (324)
Q Consensus 98 ~~~~~A~~~~~~~l~~~~~~~~---------------------------------------------------------- 119 (324)
|++++|+..+..++...+....
T Consensus 81 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d1w3ba_ 81 GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHH
Confidence 8888888888777665443211
Q ss_pred ------cHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHH
Q psy8160 120 ------TKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKS 193 (324)
Q Consensus 120 ------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a 193 (324)
....++..+|.++...|++++|...+++++..+ |++ ..++..+|.++.. .+++++|+..++++
T Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~--~~~~~~l~~~~~~-------~~~~~~A~~~~~~~ 229 (388)
T d1w3ba_ 161 AIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PNF--LDAYINLGNVLKE-------ARIFDRAVAAYLRA 229 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHT-------TTCTTHHHHHHHHH
T ss_pred hhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC--ccc--HHHHHHHhhhhhc-------cccHHHHHHHHHHh
Confidence 012356667777778888888888888888887 776 3477788877765 34777788888888
Q ss_pred hhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH-----------HHH
Q psy8160 194 IEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL-----------NKY 262 (324)
Q Consensus 194 l~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-----------~~~ 262 (324)
...+|..+..+..+|.++...|++++|+..|+++++++|+++.+|..+|.++...|+ +.+|+..| .++
T Consensus 230 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~ 308 (388)
T d1w3ba_ 230 LSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS-VAEAEDCYNTALRLCPTHADSL 308 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHhhhccCCccchhh
Confidence 888887888888888888888888888888888888888888888888888888888 88887777 667
Q ss_pred HhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHhh
Q psy8160 263 RDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYRD 321 (324)
Q Consensus 263 ~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 321 (324)
..+|.++...|++++ |+..|+++++++|+++.++.+++.+. ...|++++|++.|++
T Consensus 309 ~~l~~~~~~~~~~~~--A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~~ 364 (388)
T d1w3ba_ 309 NNLANIKREQGNIEE--AVRLYRKALEVFPEFAAAHSNLASVL-QQQGKLQEALMHYKE 364 (388)
T ss_dssp HHHHHHHHTTTCHHH--HHHHHHHHTTSCTTCHHHHHHHHHHH-HTTTCCHHHHHHHHH
T ss_pred hHHHHHHHHCCCHHH--HHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHH
Confidence 777778877788887 88888888888887777777776553 356777777777754
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.4e-32 Score=233.67 Aligned_cols=280 Identities=15% Similarity=0.138 Sum_probs=252.0
Q ss_pred HHHHHhhhhccccccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cC
Q psy8160 4 VIQKNLVEGIVTSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-ID 80 (324)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~ 80 (324)
.+++.+...+.+++.+..+|.+....+ ++|++.|+++++++|+. .++++.+|.++..+|++++|+..+..++ .+
T Consensus 21 ~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 97 (388)
T d1w3ba_ 21 HCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL---AEAYSNLGNVYKERGQLQEAIEHYRHALRLK 97 (388)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHhhhhccccccccccccccccc
Confidence 345556666777788888888777666 99999999999999874 5689999999999999999999998877 53
Q ss_pred C--------------------------------------------------------------------CCchhhHHHHH
Q psy8160 81 A--------------------------------------------------------------------SPCTFTKLEGL 92 (324)
Q Consensus 81 ~--------------------------------------------------------------------~~~~~~~~la~ 92 (324)
| ........+|.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 177 (388)
T d1w3ba_ 98 PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGC 177 (388)
T ss_dssp TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcc
Confidence 3 44455555788
Q ss_pred HHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHh
Q psy8160 93 MFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHC 172 (324)
Q Consensus 93 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~ 172 (324)
++...|++++|...+++++...|... +++..+|.++...|++++|+..|++++..+ |.. +..+..+|.++..
T Consensus 178 ~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~--~~~~~~l~~~~~~ 249 (388)
T d1w3ba_ 178 VFNAQGEIWLAIHHFEKAVTLDPNFL----DAYINLGNVLKEARIFDRAVAAYLRALSLS--PNH--AVVHGNLACVYYE 249 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHTTTCTTHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHH
T ss_pred cccccCcHHHHHHHHHHHHHhCcccH----HHHHHHhhhhhccccHHHHHHHHHHhHHHh--hhH--HHHHHHHHHHHHH
Confidence 88999999999999999999988775 889999999999999999999999999988 776 5589999999977
Q ss_pred hhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCH
Q psy8160 173 IDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNR 252 (324)
Q Consensus 173 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~ 252 (324)
.+++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...|.++..+..+|.++...|+ +
T Consensus 250 -------~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~ 321 (388)
T d1w3ba_ 250 -------QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN-I 321 (388)
T ss_dssp -------TTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC-H
T ss_pred -------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCC-H
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhh
Q psy8160 253 EDYHQAL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFS 304 (324)
Q Consensus 253 ~~A~~~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 304 (324)
++|+..| .+|+++|.+|...|++++ |+.+|++|++++|+++.++.+++.+
T Consensus 322 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~--A~~~~~~al~l~P~~~~a~~~lg~~ 382 (388)
T d1w3ba_ 322 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE--ALMHYKEAIRISPTFADAYSNMGNT 382 (388)
T ss_dssp HHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHH--HHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999 789999999999999999 9999999999999999998888754
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=1.1e-30 Score=220.77 Aligned_cols=273 Identities=13% Similarity=0.058 Sum_probs=217.6
Q ss_pred HHHHHhccCCCcc-cchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHh
Q psy8160 36 TFQQLLYVDPSYL-RANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLID 113 (324)
Q Consensus 36 ~~~~~l~~~p~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 113 (324)
.|++++...++++ ...+..+..|..++..|++++|+.+|++++ .+|.+..++..+|.++...|++++|+..|++++..
T Consensus 3 ~~~~~~~~~~~n~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~ 82 (323)
T d1fcha_ 3 TYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL 82 (323)
T ss_dssp HHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chHHhHhhcccCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc
Confidence 4566666665543 234456899999999999999999999999 99999999999999999999999999999999999
Q ss_pred cCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHH-------HHHHHHHHHhhhhhcccchhHHHH
Q psy8160 114 ASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADI-------CRQLGWMYHCIDTLGEKSHRETLA 186 (324)
Q Consensus 114 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~~~~~~~~A 186 (324)
.|... .++..+|.++...|++++|++.+++++... |....... ...++........ -...+.+.+|
T Consensus 83 ~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a 155 (323)
T d1fcha_ 83 KPDNQ----TALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGS-LLSDSLFLEV 155 (323)
T ss_dssp CTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHH-HHHHHHHHHH
T ss_pred ccccc----cccccccccccccccccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHH-HHHhhHHHHH
Confidence 88775 889999999999999999999999999887 55422111 1111111100000 0013478899
Q ss_pred HHHHHHHhhhCCcc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH-----
Q psy8160 187 IHCLQKSIEADPKS--GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL----- 259 (324)
Q Consensus 187 ~~~~~~al~~~~~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~----- 259 (324)
+..+.+++..+|.. +.++..+|.++...|++++|+..|++++..+|+++.+|..+|.++...|+ +++|+++|
T Consensus 156 ~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~ 234 (323)
T d1fcha_ 156 KELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQ-SEEAVAAYRRALE 234 (323)
T ss_dssp HHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhccccccc-chhHHHHHHHHHH
Confidence 99999999998874 57889999999999999999999999999999999999999999999999 99999999
Q ss_pred ------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHH
Q psy8160 260 ------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNK 318 (324)
Q Consensus 260 ------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~ 318 (324)
.+|+++|.+|...|++++ |+..|++|++++|+++........+.....+.+..++..
T Consensus 235 ~~p~~~~a~~~lg~~~~~~g~~~~--A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~ 297 (323)
T d1fcha_ 235 LQPGYIRSRYNLGISCINLGAHRE--AVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSM 297 (323)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHH--HHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHH
Confidence 889999999999999999 999999999999999887666544322222334444443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2.1e-28 Score=206.63 Aligned_cols=245 Identities=17% Similarity=0.150 Sum_probs=208.8
Q ss_pred hhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHh
Q psy8160 20 PKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKV 96 (324)
Q Consensus 20 ~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~ 96 (324)
...|...+..+ ++|+..|+++++.+|+ ..++++.+|.++...|++++|+.+|.+++ ++|.+...+..+|.++..
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 99 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQDPK---HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTN 99 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccc
Confidence 34555444444 9999999999999987 46689999999999999999999999999 999999999999999999
Q ss_pred cccHHHHHHHHHHHHHhcCCCccc-----HHHH------HHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHH
Q psy8160 97 NNEYDSALKHLTLCLIDASPCTFT-----KLEV------RFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQ 165 (324)
Q Consensus 97 ~~~~~~A~~~~~~~l~~~~~~~~~-----~~~~------~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 165 (324)
.|++++|++.+++++...|..... .... .......+...+.+.+|+..|.+++..+ |....+.++..
T Consensus 100 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~--p~~~~~~~~~~ 177 (323)
T d1fcha_ 100 ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD--PTSIDPDVQCG 177 (323)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHS--TTSCCHHHHHH
T ss_pred cccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHh--hcccccccchh
Confidence 999999999999999887764321 0011 1112233456678899999999999999 77666778999
Q ss_pred HHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHH
Q psy8160 166 LGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKD 245 (324)
Q Consensus 166 l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 245 (324)
+|.++.. .|++++|+.++++++..+|+++.+|+.+|.++...|++++|+..|+++++++|+++.+|+.+|.+|
T Consensus 178 l~~~~~~-------~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 250 (323)
T d1fcha_ 178 LGVLFNL-------SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC 250 (323)
T ss_dssp HHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHH-------HHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 9999977 459999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCHHHHHHHH----------------------HHHHhhHHHHHHcCCCCc
Q psy8160 246 FSNNSNREDYHQAL----------------------NKYRDLGDFLVINNIPTS 277 (324)
Q Consensus 246 ~~~~~~~~~A~~~~----------------------~~~~~lg~~~~~~~~~~~ 277 (324)
...|+ +++|+..| .+|.+++.++...++.+.
T Consensus 251 ~~~g~-~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~ 303 (323)
T d1fcha_ 251 INLGA-HREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 303 (323)
T ss_dssp HHHTC-HHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHCCC-HHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999 99999999 456667777777776665
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.4e-24 Score=182.13 Aligned_cols=224 Identities=11% Similarity=0.073 Sum_probs=192.4
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcc-cHHHHHHHHHHHHHhcCCCcccHHHHHHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNN-EYDSALKHLTLCLIDASPCTFTKLEVRFH 127 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 127 (324)
..+++..+|.++...+.+++|+..++++| ++|.+..++..+|.++...| ++++|+.++++++..+|.+. .++..
T Consensus 42 ~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~----~a~~~ 117 (315)
T d2h6fa1 42 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY----QVWHH 117 (315)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH----HHHHH
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhh----hHHHH
Confidence 45678889999999999999999999999 99999999999999998876 59999999999999999886 89999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHH
Q psy8160 128 IAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLL 207 (324)
Q Consensus 128 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 207 (324)
+|.++..+|++++|++.+++++..+ |++.. +|..+|+++.. .+++++|+.+++++++++|.+..+|.++
T Consensus 118 ~~~~~~~l~~~~eAl~~~~kal~~d--p~n~~--a~~~~~~~~~~-------~~~~~~Al~~~~~al~~~p~n~~a~~~r 186 (315)
T d2h6fa1 118 RRVLVEWLRDPSQELEFIADILNQD--AKNYH--AWQHRQWVIQE-------FKLWDNELQYVDQLLKEDVRNNSVWNQR 186 (315)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHC--TTCHH--HHHHHHHHHHH-------HTCCTTHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HhHHHHhhccHHHHHHHHhhhhhhh--hcchH--HHHHHHHHHHH-------HHhhHHHHHHHHHHHHHCCccHHHHHHH
Confidence 9999999999999999999999999 88844 99999999976 4488999999999999999999999999
Q ss_pred HHHHHHcCC------HHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH-------------HHHHhhHHH
Q psy8160 208 GRCFAAVGK------VHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL-------------NKYRDLGDF 268 (324)
Q Consensus 208 g~~~~~~~~------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-------------~~~~~lg~~ 268 (324)
|.++...+. +++|+..+.+++.++|+++.+|..+|.++...+ ..++...+ .++..++.+
T Consensus 187 ~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ 264 (315)
T d2h6fa1 187 YFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG--LSKYPNLLNQLLDLQPSHSSPYLIAFLVDI 264 (315)
T ss_dssp HHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC--GGGCHHHHHHHHHHTTTCCCHHHHHHHHHH
T ss_pred HHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC--hHHHHHHHHHHHHhCCCcCCHHHHHHHHHH
Confidence 999888776 578999999999999999999999999876554 34444444 455667777
Q ss_pred HHHc--CCCCcchHHHHHHHhhhcCC
Q psy8160 269 LVIN--NIPTSNNNRQCYNSYSTSIA 292 (324)
Q Consensus 269 ~~~~--~~~~~~~A~~~~~~al~~~p 292 (324)
|... +..+. +...+.+++++.+
T Consensus 265 y~~~~~~~~~~--~~~~~~ka~~l~~ 288 (315)
T d2h6fa1 265 YEDMLENQCDN--KEDILNKALELCE 288 (315)
T ss_dssp HHHHHHTTCSS--HHHHHHHHHHHHH
T ss_pred HHHHHhcCHHH--HHHHHHHHHHHHH
Confidence 7554 67777 8888888877643
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=4.1e-23 Score=168.31 Aligned_cols=212 Identities=11% Similarity=0.035 Sum_probs=147.1
Q ss_pred hccHHHHHHHHHHHh-cC----CCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcH
Q psy8160 64 NNEYDSALKHLTLCL-ID----ASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKY 138 (324)
Q Consensus 64 ~~~~~~A~~~~~~al-~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~ 138 (324)
..+.+.|+..+.+++ .. |....++..+|.+|...|++++|+..|++++..+|... .+++.+|.++...|++
T Consensus 12 ~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~----~a~~~lg~~~~~~g~~ 87 (259)
T d1xnfa_ 12 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP----EVFNYLGIYLTQAGNF 87 (259)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHTTCH
T ss_pred cHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCH----HHHhhhchHHHHHHHH
Confidence 345666777777776 32 23344666678888888888888888888887777765 7777888888888888
Q ss_pred HHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHH
Q psy8160 139 KTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVH 218 (324)
Q Consensus 139 ~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~ 218 (324)
++|+..|++++..+ |++ +.++..+|.++.. .|++++|+..++++++.+|.+......++.++...+..+
T Consensus 88 ~~A~~~~~~al~~~--p~~--~~a~~~lg~~~~~-------~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 156 (259)
T d1xnfa_ 88 DAAYEAFDSVLELD--PTY--NYAHLNRGIALYY-------GGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQ 156 (259)
T ss_dssp HHHHHHHHHHHHHC--TTC--THHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHH
T ss_pred HHhhhhhhHHHHHH--hhh--hhhHHHHHHHHHH-------HhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHH
Confidence 88888888888877 766 4477778877765 447778888888888888877777777777777777666
Q ss_pred HHHHHHHHHHccCCCCHHHHHHhHHHHh----hcCCCHHHHHHHH-----------HHHHhhHHHHHHcCCCCcchHHHH
Q psy8160 219 DAFLAYRNSVEKSEGNADTWCSIGNKDF----SNNSNREDYHQAL-----------NKYRDLGDFLVINNIPTSNNNRQC 283 (324)
Q Consensus 219 ~A~~~~~~al~~~p~~~~~~~~lg~~~~----~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~~~A~~~ 283 (324)
.+...........+..+.. .+...+. ..+. ...+...+ .+|+++|.+|...|++++ |+.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~--A~~~ 231 (259)
T d1xnfa_ 157 AKEVLKQHFEKSDKEQWGW--NIVEFYLGNISEQTL-MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDS--ATAL 231 (259)
T ss_dssp HHHHHHHHHHHSCCCSTHH--HHHHHHTTSSCHHHH-HHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHH--HHHH
T ss_pred HHHHHHHHhhccchhhhhh--hHHHHHHHHHHHHHH-HHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHH--HHHH
Confidence 5555555555554444321 1111111 1112 22222222 789999999999999999 9999
Q ss_pred HHHhhhcCCChh
Q psy8160 284 YNSYSTSIASCK 295 (324)
Q Consensus 284 ~~~al~~~p~~~ 295 (324)
|++|+..+|++.
T Consensus 232 ~~~al~~~p~~~ 243 (259)
T d1xnfa_ 232 FKLAVANNVHNF 243 (259)
T ss_dssp HHHHHTTCCTTC
T ss_pred HHHHHHcCCCCH
Confidence 999999999864
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=2.3e-22 Score=168.52 Aligned_cols=205 Identities=9% Similarity=0.031 Sum_probs=180.1
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhc-cHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNN-EYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLT 108 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 108 (324)
++|++.|+++++++|+ ...+|+.+|.++...| ++++|+..+++++ .+|.+..++..+|.++...|++++|+..++
T Consensus 60 ~~Al~~~~~ai~lnP~---~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~ 136 (315)
T d2h6fa1 60 ERAFKLTRDAIELNAA---NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIA 136 (315)
T ss_dssp HHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHH
T ss_pred HHHHHHHHHHHHHCCC---ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHh
Confidence 9999999999999987 4568999999999876 5999999999999 999999999999999999999999999999
Q ss_pred HHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHH
Q psy8160 109 LCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIH 188 (324)
Q Consensus 109 ~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~ 188 (324)
+++...|.+. .+|.++|.++...|++++|++.|++++.++ |.+. .+|.++|.++....... ..+.+++|+.
T Consensus 137 kal~~dp~n~----~a~~~~~~~~~~~~~~~~Al~~~~~al~~~--p~n~--~a~~~r~~~l~~~~~~~-~~~~~~~ai~ 207 (315)
T d2h6fa1 137 DILNQDAKNY----HAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNN--SVWNQRYFVISNTTGYN-DRAVLEREVQ 207 (315)
T ss_dssp HHHHHCTTCH----HHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCH--HHHHHHHHHHHHTTCSC-SHHHHHHHHH
T ss_pred hhhhhhhcch----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHC--CccH--HHHHHHHHHHHHccccc-hhhhhHHhHH
Confidence 9999999987 899999999999999999999999999999 9884 49999999886533221 2456899999
Q ss_pred HHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC--HHHHHHhHHHHhhc
Q psy8160 189 CLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN--ADTWCSIGNKDFSN 248 (324)
Q Consensus 189 ~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~ 248 (324)
.+.++++.+|.+..+|..+|.++...+ ..++...+++++.+.|+. +.++..++.+|...
T Consensus 208 ~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~ 268 (315)
T d2h6fa1 208 YTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDM 268 (315)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999866544 688999999998888865 55556677776543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.89 E-value=6e-24 Score=180.09 Aligned_cols=249 Identities=8% Similarity=-0.090 Sum_probs=213.7
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHH----------HHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcc-
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLM----------FKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNN- 98 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~----------~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~- 98 (324)
++|++.++++++++|++. ++|...+.+ +...|.+++|+.++++++ .+|.+..++..+|.++...+
T Consensus 46 ~~al~~~~~~l~~~P~~~---~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~ 122 (334)
T d1dcea1 46 ESVLELTSQILGANPDFA---TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE 122 (334)
T ss_dssp HHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHCCCcH---HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhcc
Confidence 799999999999999854 344444433 455667999999999999 99999999999998888776
Q ss_pred -cHHHHHHHHHHHHHhcCCCcccHHHH-HHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhh
Q psy8160 99 -EYDSALKHLTLCLIDASPCTFTKLEV-RFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTL 176 (324)
Q Consensus 99 -~~~~A~~~~~~~l~~~~~~~~~~~~~-~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~ 176 (324)
++++|+..+++++..+|... .+ ...+|.++...+.+++|+..+++++..+ |.+ ..+|..+|.++..
T Consensus 123 ~~~~~a~~~~~~al~~~~~~~----~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~--p~~--~~a~~~l~~~~~~---- 190 (334)
T d1dcea1 123 PNWARELELCARFLEADERNF----HCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSN--YSSWHYRSCLLPQ---- 190 (334)
T ss_dssp CCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT--CCC--HHHHHHHHHHHHH----
T ss_pred ccHHHHHHHHHHHHhhCchhh----hhhhhHHHHHHHhccccHHHHHHHHHHHHcC--CCC--HHHHHHHHHHHHH----
Confidence 48999999999999988765 44 4567889999999999999999999999 888 4599999999977
Q ss_pred cccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHH
Q psy8160 177 GEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYH 256 (324)
Q Consensus 177 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~ 256 (324)
.+++++|+..+++++...|.....+. .+...+..++|...|.+++..+|.++..+..+|.++...++ +.+|+
T Consensus 191 ---~~~~~~A~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~-~~~a~ 262 (334)
T d1dcea1 191 ---LHPQPDSGPQGRLPENVLLKELELVQ----NAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQS-ELESC 262 (334)
T ss_dssp ---HSCCCCSSSCCSSCHHHHHHHHHHHH----HHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHH-HHHHH
T ss_pred ---hcCHHHHHHHHHHhHHhHHHHHHHHH----HHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhh-HHHHH
Confidence 34777788888888888777665443 34566778899999999999999999999999999999999 99999
Q ss_pred HHH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhh
Q psy8160 257 QAL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFS 304 (324)
Q Consensus 257 ~~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 304 (324)
..+ .+|..+|.+|...|++++ |+++|+++++++|.++..+..+...
T Consensus 263 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~e--A~~~~~~ai~ldP~~~~y~~~L~~~ 319 (334)
T d1dcea1 263 KELQELEPENKWCLLTIILLMRALDPLLYEKE--TLQYFSTLKAVDPMRAAYLDDLRSK 319 (334)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHH--HHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHHHhhCchHHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHHCcccHHHHHHHHHH
Confidence 988 889999999999999999 9999999999999998888877543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=1.4e-21 Score=159.01 Aligned_cols=197 Identities=13% Similarity=0.120 Sum_probs=145.9
Q ss_pred HHHHHHHHHHhccCC-CcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDP-SYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLT 108 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 108 (324)
+.|+..+++++...+ ..+..+.+++.+|.+|...|++++|+..|++++ ++|++..++..+|.++...|++++|++.|+
T Consensus 16 e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 95 (259)
T d1xnfa_ 16 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFD 95 (259)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhh
Confidence 567777777776544 223456788889999999999999999999999 899999998889999999999999999999
Q ss_pred HHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhh-------------
Q psy8160 109 LCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDT------------- 175 (324)
Q Consensus 109 ~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~------------- 175 (324)
+++...|... .+++++|.++..+|++++|+..|++++..+ |.+.. ....++..+.....
T Consensus 96 ~al~~~p~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (259)
T d1xnfa_ 96 SVLELDPTYN----YAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPF--RSLWLYLAEQKLDEKQAKEVLKQHFEK 167 (259)
T ss_dssp HHHHHCTTCT----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHH--HHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhh----hhHHHHHHHHHHHhhHHHHHHHHHHHHhhc--cccHH--HHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 9998888776 788889999999999999999999998888 76644 33333333222110
Q ss_pred --------------hc--ccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q psy8160 176 --------------LG--EKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNA 235 (324)
Q Consensus 176 --------------~~--~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 235 (324)
.+ ...+..+.+...+.......|....+|+.+|.++...|++++|+..|++++..+|++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 243 (259)
T d1xnfa_ 168 SDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 243 (259)
T ss_dssp SCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH
Confidence 00 0122344444455555555666667888888888888888888888888888888764
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=5.3e-20 Score=155.65 Aligned_cols=275 Identities=9% Similarity=-0.104 Sum_probs=213.4
Q ss_pred hhhccccccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccc--hHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCC-
Q psy8160 10 VEGIVTSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRA--NEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASP- 83 (324)
Q Consensus 10 ~~~~~~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~- 83 (324)
.++..+++.....+.+.+..+ ++|++.|+++++..|+.+.. ..++..+|.++...|++++|+..|++++ ..+..
T Consensus 6 ~~~~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~ 85 (366)
T d1hz4a_ 6 REDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD 85 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred cccchhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence 344444555445555555444 99999999999999875332 3478889999999999999999999998 54433
Q ss_pred -----chhhHHHHHHHHhcccHHHHHHHHHHHHHhcCC----CcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC
Q psy8160 84 -----CTFTKLEGLMFKVNNEYDSALKHLTLCLIDASP----CTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDL 154 (324)
Q Consensus 84 -----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 154 (324)
......++.++...|++..|...+.+++...+. .......++..+|.++...|+++.+...+.+++.....
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~ 165 (366)
T d1hz4a_ 86 VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS 165 (366)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhh
Confidence 233455789999999999999999999765322 22234457788999999999999999999999877632
Q ss_pred CCc-hhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCC-------ccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy8160 155 PVH-LKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADP-------KSGQSLYLLGRCFAAVGKVHDAFLAYRN 226 (324)
Q Consensus 155 ~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-------~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 226 (324)
... ....++...+..+.. .+.+.++...+.++....+ ....++..+|.++...|++++|...+++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~-------~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 238 (366)
T d1hz4a_ 166 YQPQQQLQCLAMLIQCSLA-------RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRH 238 (366)
T ss_dssp SCGGGGHHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHh-------hhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 221 124466666766655 3377778877777765432 2345678889999999999999999999
Q ss_pred HHccCCCC----HHHHHHhHHHHhhcCCCHHHHHHHH-----------------HHHHhhHHHHHHcCCCCcchHHHHHH
Q psy8160 227 SVEKSEGN----ADTWCSIGNKDFSNNSNREDYHQAL-----------------NKYRDLGDFLVINNIPTSNNNRQCYN 285 (324)
Q Consensus 227 al~~~p~~----~~~~~~lg~~~~~~~~~~~~A~~~~-----------------~~~~~lg~~~~~~~~~~~~~A~~~~~ 285 (324)
++...|.+ ...+..+|.++...|+ +++|+..+ .++..+|.+|...|++++ |++.++
T Consensus 239 ~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~--A~~~l~ 315 (366)
T d1hz4a_ 239 TAKPEFANNHFLQGQWRNIARAQILLGE-FEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSD--AQRVLL 315 (366)
T ss_dssp SCCCCCTTCGGGHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH--HHHHHH
T ss_pred HHHhccccchHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHH--HHHHHH
Confidence 99988765 4567789999999999 99999988 578999999999999999 999999
Q ss_pred HhhhcCCCh
Q psy8160 286 SYSTSIASC 294 (324)
Q Consensus 286 ~al~~~p~~ 294 (324)
+|+++.+..
T Consensus 316 ~Al~l~~~~ 324 (366)
T d1hz4a_ 316 DALKLANRT 324 (366)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhhc
Confidence 999986643
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.81 E-value=8.6e-21 Score=160.40 Aligned_cols=201 Identities=9% Similarity=-0.079 Sum_probs=143.4
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhc--cHHHHHHHHHHHh-cCCCCchhh-HHHHHHHHhcccHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNN--EYDSALKHLTLCL-IDASPCTFT-KLEGLMFKVNNEYDSALKH 106 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~--~~~~A~~~~~~al-~~~~~~~~~-~~la~~~~~~~~~~~A~~~ 106 (324)
++|+..|+++++.+|+ +..+++.+|.++...+ ++++|+..+.+++ .+|.+..++ ...|.++...+.+++|+..
T Consensus 90 ~~al~~~~~~l~~~pk---~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~ 166 (334)
T d1dcea1 90 KAELGFLESCLRVNPK---SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAF 166 (334)
T ss_dssp HHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC---cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHH
Confidence 7899999999999986 4567888888887766 5899999999999 999998876 4678899999999999999
Q ss_pred HHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchh---------------------------
Q psy8160 107 LTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK--------------------------- 159 (324)
Q Consensus 107 ~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--------------------------- 159 (324)
+++++..+|.+. .++..+|.++...|++++|+..+++++... |....
T Consensus 167 ~~~~i~~~p~~~----~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~ 240 (334)
T d1dcea1 167 TDSLITRNFSNY----SSWHYRSCLLPQLHPQPDSGPQGRLPENVL--LKELELVQNAFFTDPNDQSAWFYHRWLLGRAE 240 (334)
T ss_dssp HHTTTTTTCCCH----HHHHHHHHHHHHHSCCCCSSSCCSSCHHHH--HHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCC
T ss_pred HHHHHHcCCCCH----HHHHHHHHHHHHhcCHHHHHHHHHHhHHhH--HHHHHHHHHHHHhcchhHHHHHHHHHHHhCcc
Confidence 999999988876 899999999999998877665555544443 32211
Q ss_pred -hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q psy8160 160 -ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTW 238 (324)
Q Consensus 160 -~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 238 (324)
...+..+|.++.. .+++.+|+..+.+++..+|.+..+|..+|.++...|++++|+.+|+++++++|.++..|
T Consensus 241 ~~~~~~~l~~~~~~-------~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~ 313 (334)
T d1dcea1 241 PLFRCELSVEKSTV-------LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 313 (334)
T ss_dssp CSSSCCCCHHHHHH-------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH
T ss_pred hhhHHHHHHHHHHH-------HhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHH
Confidence 0012222222222 33566666666666666666666666666666666666666666666666666666666
Q ss_pred HHhHHHHhh
Q psy8160 239 CSIGNKDFS 247 (324)
Q Consensus 239 ~~lg~~~~~ 247 (324)
..++..+..
T Consensus 314 ~~L~~~~~~ 322 (334)
T d1dcea1 314 DDLRSKFLL 322 (334)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhH
Confidence 666555543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.79 E-value=4.6e-17 Score=137.23 Aligned_cols=261 Identities=12% Similarity=-0.017 Sum_probs=207.7
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCch-----hhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCc--ccH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCT-----FTKLEGLMFKVNNEYDSALKHLTLCLIDASPCT--FTK 121 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~-----~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~--~~~ 121 (324)
.++++.-.|.++...|++++|+.++++++ ..|.+.. ++..+|.++...|++++|+..|++++...+... ...
T Consensus 11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 90 (366)
T d1hz4a_ 11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 90 (366)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHH
Confidence 35677778999999999999999999999 8887743 556689999999999999999999987644332 244
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCC----CCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhC
Q psy8160 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDD----LPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEAD 197 (324)
Q Consensus 122 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 197 (324)
..++..++.++...|++..|...+.+++.... .+....+.+...+|.++.. .++++.+...+.+++...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-------~~~~~~a~~~~~~~~~~~ 163 (366)
T d1hz4a_ 91 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA-------WARLDEAEASARSGIEVL 163 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHH-------hcchhhhHHHHHHHHHHh
Confidence 56788899999999999999999999886531 1111224567778888866 458999999999998766
Q ss_pred Ccc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-------HHHHHHhHHHHhhcCCCHHHHHHHH------
Q psy8160 198 PKS-----GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN-------ADTWCSIGNKDFSNNSNREDYHQAL------ 259 (324)
Q Consensus 198 ~~~-----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~~~~~~~A~~~~------ 259 (324)
+.. ..++..++.++...+++.++...+.++....+.. ..++..+|.++...|+ +++|...+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~ 242 (366)
T d1hz4a_ 164 SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGD-KAAAANWLRHTAKP 242 (366)
T ss_dssp TTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHSCCC
T ss_pred hhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHh
Confidence 543 3677888999999999999999999988754432 4567788999999999 99999998
Q ss_pred ---------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhc------CCChhhhhhchhhhccCChhhHHHHHHHHhh
Q psy8160 260 ---------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTS------IASCKHINNNKDFSNNSNREDYHQALNKYRD 321 (324)
Q Consensus 260 ---------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 321 (324)
..+.++|.++...|++++ |+..+++++.. .|....+...++.+. ...|++++|++.++.
T Consensus 243 ~~~~~~~~~~~~~~la~~~~~~g~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~l~~ 316 (366)
T d1hz4a_ 243 EFANNHFLQGQWRNIARAQILLGEFEP--AEIVLEELNENARSLRLMSDLNRNLLLLNQLY-WQAGRKSDAQRVLLD 316 (366)
T ss_dssp CCTTCGGGHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHTCHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHHHhhcccChHHHHHHHHHHHHH-HHCCCHHHHHHHHHH
Confidence 567889999999999999 99999999843 444555566666543 456888888887764
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=3.1e-17 Score=116.15 Aligned_cols=112 Identities=13% Similarity=0.091 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHH
Q psy8160 124 VRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQS 203 (324)
Q Consensus 124 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 203 (324)
-+...|..+...|++++|+..|++++..+ |.+ +.++..+|.++.. .+++++|+..+.++++++|.++.+
T Consensus 5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~~--p~~--~~~~~~~a~~~~~-------~~~~~~A~~~~~~al~~~p~~~~~ 73 (117)
T d1elwa_ 5 ELKEKGNKALSVGNIDDALQCYSEAIKLD--PHN--HVLYSNRSAAYAK-------KGDYQKAYEDGCKTVDLKPDWGKG 73 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Ccc--hhhhhcccccccc-------cccccccchhhhhHHHhccchhhH
Confidence 35678999999999999999999999999 988 5599999999977 559999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHh
Q psy8160 204 LYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDF 246 (324)
Q Consensus 204 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 246 (324)
|+.+|.++..+|++++|+..|+++++++|+++.++..++.+..
T Consensus 74 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 74 YSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999988754
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=6.1e-19 Score=156.65 Aligned_cols=143 Identities=11% Similarity=0.042 Sum_probs=75.5
Q ss_pred HHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHH
Q psy8160 91 GLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMY 170 (324)
Q Consensus 91 a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~ 170 (324)
+.+....+.|+.|+..+++++...|... ..+.++|..+...|++++|+..+++++..+ |. .++..+|.++
T Consensus 93 ~~l~~a~~~Y~~ai~~l~~~~~l~~~~~----~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~----~~~~~LG~l~ 162 (497)
T d1ya0a1 93 LFLEAASGFYTQLLQELCTVFNVDLPCR----VKSSQLGIISNKQTHTSAIVKPQSSSCSYI--CQ----HCLVHLGDIA 162 (497)
T ss_dssp HHHHHHHHHHHHHHHHHTC-----------------------------------CCHHHHHH--HH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCChhhH----HHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--HH----HHHHHHHHHH
Confidence 4444455566666666665555554443 556667777777777777777777766655 32 3666777777
Q ss_pred HhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCC
Q psy8160 171 HCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNS 250 (324)
Q Consensus 171 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 250 (324)
+. .+++++|+.+|+++++++|+++.++++||.++...|++.+|+.+|.+++..+|.++.++.+|+.++.....
T Consensus 163 ~~-------~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~ 235 (497)
T d1ya0a1 163 RY-------RNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALE 235 (497)
T ss_dssp HH-------TTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTT
T ss_pred HH-------cccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhh
Confidence 55 34677777777777777777777777777777777777777777777777777777777777777665544
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.75 E-value=3.1e-17 Score=135.49 Aligned_cols=210 Identities=13% Similarity=0.050 Sum_probs=154.2
Q ss_pred hccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCC--CcccHHHHHHHHHHHHHHhhcHHHH
Q psy8160 64 NNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASP--CTFTKLEVRFHIAHLHEVQRKYKTA 141 (324)
Q Consensus 64 ~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A 141 (324)
.++|++|.++|.++ |.+|...+++++|+++|++++..... +.......+.++|.+|...|++++|
T Consensus 30 ~~~~~~Aa~~y~~a-------------a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A 96 (290)
T d1qqea_ 30 SYKFEEAADLCVQA-------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (290)
T ss_dssp HHHHHHHHHHHHHH-------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cccHHHHHHHHHHH-------------HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHH
Confidence 34566666666643 66777777777777777777654221 2223346789999999999999999
Q ss_pred HHHHHHHHhcCCCCCc--hhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc------HHHHHHHHHHHHH
Q psy8160 142 KDSYEQLLKEDDLPVH--LKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS------GQSLYLLGRCFAA 213 (324)
Q Consensus 142 ~~~~~~al~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~lg~~~~~ 213 (324)
+++|++++.+....+. ....++..+|.++... .+++++|+.+|++++++.+.. ..++..+|.++..
T Consensus 97 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~ 170 (290)
T d1qqea_ 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILEND------LHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL 170 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhH------HHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHH
Confidence 9999999876521211 1256788888777431 348999999999998764332 3678999999999
Q ss_pred cCCHHHHHHHHHHHHccCCCCH-------HHHHHhHHHHhhcCCCHHHHHHHH----------------HHHHhhHHHHH
Q psy8160 214 VGKVHDAFLAYRNSVEKSEGNA-------DTWCSIGNKDFSNNSNREDYHQAL----------------NKYRDLGDFLV 270 (324)
Q Consensus 214 ~~~~~~A~~~~~~al~~~p~~~-------~~~~~lg~~~~~~~~~~~~A~~~~----------------~~~~~lg~~~~ 270 (324)
.|++++|+..|++++...|.++ ..+...|.++...++ +..|...+ .....+..++.
T Consensus 171 ~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d-~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~ 249 (290)
T d1qqea_ 171 DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATD-AVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVN 249 (290)
T ss_dssp TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTC-HHHHHHHHHGGGCC---------HHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHH
Confidence 9999999999999999988764 456788999999999 99998888 23344555555
Q ss_pred Hc--CCCCcchHHHHHHHhhhcCCChh
Q psy8160 271 IN--NIPTSNNNRQCYNSYSTSIASCK 295 (324)
Q Consensus 271 ~~--~~~~~~~A~~~~~~al~~~p~~~ 295 (324)
.. +.+++ |+..|.++.++||...
T Consensus 250 ~~d~e~~~e--ai~~y~~~~~lD~~~~ 274 (290)
T d1qqea_ 250 EGDSEQLSE--HCKEFDNFMRLDKWKI 274 (290)
T ss_dssp TTCTTTHHH--HHHHHTTSSCCCHHHH
T ss_pred hcCHHHHHH--HHHHHHHHhhcCHHHH
Confidence 42 35778 9999988888876443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=8.4e-17 Score=124.29 Aligned_cols=120 Identities=8% Similarity=0.028 Sum_probs=108.8
Q ss_pred HHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHh
Q psy8160 162 ICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSI 241 (324)
Q Consensus 162 ~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 241 (324)
.+.+.|..+.. .+++++|+..|.++ .|.++.+|+++|.+|..+|++++|+..|++|++++|+++.+|+++
T Consensus 7 ~l~~~g~~~~~-------~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~ 76 (192)
T d1hh8a_ 7 SLWNEGVLAAD-------KKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQR 76 (192)
T ss_dssp HHHHHHHHHHH-------TTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHH-------CCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHH
Confidence 44566777766 55999999999874 566789999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCHHHHHHHH---------------------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCCh
Q psy8160 242 GNKDFSNNSNREDYHQAL---------------------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASC 294 (324)
Q Consensus 242 g~~~~~~~~~~~~A~~~~---------------------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (324)
|.++..+|+ +++|+..| ++++++|.+|...|++++ |++.+.+|+++.|+.
T Consensus 77 g~~~~~~g~-~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~--A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 77 GMLYYQTEK-YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKK--AEEQLALATSMKSEP 153 (192)
T ss_dssp HHHHHHTTC-HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHTTCCSG
T ss_pred HHHHHhhcc-HHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHH--HHHHHHHHHhcCCCc
Confidence 999999999 99999887 668899999999999999 999999999998874
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.73 E-value=1.2e-16 Score=131.80 Aligned_cols=204 Identities=12% Similarity=0.045 Sum_probs=155.5
Q ss_pred ccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cC------CCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCc--
Q psy8160 48 LRANEVHLRLGLMFKVNNEYDSALKHLTLCL-ID------ASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCT-- 118 (324)
Q Consensus 48 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~-- 118 (324)
+.+.+.|...|.+|...++|++|+++|.+++ +. +.....+..+|.+|...|++++|++.|++++...+...
T Consensus 34 ~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~ 113 (290)
T d1qqea_ 34 EEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF 113 (290)
T ss_dssp HHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccc
Confidence 3445678888999999999999999999998 52 22234567789999999999999999999987644332
Q ss_pred ccHHHHHHHHHHHHHH-hhcHHHHHHHHHHHHhcCCCCC--chhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhh
Q psy8160 119 FTKLEVRFHIAHLHEV-QRKYKTAKDSYEQLLKEDDLPV--HLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIE 195 (324)
Q Consensus 119 ~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 195 (324)
.....++..+|.++.. .|++++|+..|++++.+....+ .....++..+|.++.. .|++++|+..|++++.
T Consensus 114 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~-------~g~y~~A~~~~~~~~~ 186 (290)
T d1qqea_ 114 RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL-------DGQYIEASDIYSKLIK 186 (290)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHH-------cChHHHHHHHHHHHHH
Confidence 2345678889988865 6999999999999987641111 1125678899999977 5599999999999999
Q ss_pred hCCccH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHH-----HHHhHHHHhh--cCCCHHHHHHHH
Q psy8160 196 ADPKSG-------QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADT-----WCSIGNKDFS--NNSNREDYHQAL 259 (324)
Q Consensus 196 ~~~~~~-------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~-----~~~lg~~~~~--~~~~~~~A~~~~ 259 (324)
..|.++ ..+...|.++...|++..|...++++++++|..+.. ...+..++.. .+. +++|+..|
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~-~~eai~~y 263 (290)
T d1qqea_ 187 SSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQ-LSEHCKEF 263 (290)
T ss_dssp TTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTT-HHHHHHHH
T ss_pred hCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHH-HHHHHHHH
Confidence 887664 457788999999999999999999999999976554 3445555544 456 88999887
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=6e-17 Score=114.63 Aligned_cols=110 Identities=12% Similarity=0.061 Sum_probs=98.3
Q ss_pred HHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHh
Q psy8160 162 ICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSI 241 (324)
Q Consensus 162 ~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 241 (324)
-+...|..++. .|++++|+.+|+++++.+|.++.+|..+|.++..+|++++|+..|++++.++|+++.+|+.+
T Consensus 5 ~l~~~g~~~~~-------~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 77 (117)
T d1elwa_ 5 ELKEKGNKALS-------VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRK 77 (117)
T ss_dssp HHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHH-------cCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHH
Confidence 45566777766 55999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhh
Q psy8160 242 GNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFS 304 (324)
Q Consensus 242 g~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 304 (324)
|.++..+|+ +++ |+.+|+++++++|+++.+...+..+
T Consensus 78 g~~~~~~~~------------------------~~~--A~~~~~~a~~~~p~~~~~~~~l~~l 114 (117)
T d1elwa_ 78 AAALEFLNR------------------------FEE--AKRTYEEGLKHEANNPQLKEGLQNM 114 (117)
T ss_dssp HHHHHHTTC------------------------HHH--HHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHccC------------------------HHH--HHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 988888888 566 9999999999999999988877543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=2.2e-16 Score=118.21 Aligned_cols=123 Identities=19% Similarity=0.113 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH
Q psy8160 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG 201 (324)
Q Consensus 122 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 201 (324)
++.+...|..++..|+|++|+..|++++..+ |++ +.+|..+|.++.. .|++++|+..|+++++++|.++
T Consensus 10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~--p~~--~~~~~~lg~~~~~-------~~~~~~A~~~~~kal~~~p~~~ 78 (159)
T d1a17a_ 10 AEELKTQANDYFKAKDYENAIKFYSQAIELN--PSN--AIYYGNRSLAYLR-------TECYGYALGDATRAIELDKKYI 78 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHhhhccccc--hhh--hhhhhhhHHHHHh-------ccccchHHHHHHHHHHHcccch
Confidence 4567778999999999999999999999999 988 5599999999987 5599999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhh--cCCCHHHHH
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFS--NNSNREDYH 256 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~--~~~~~~~A~ 256 (324)
.+|+.+|.++..+|++++|+..|++++.++|+++.++..++.+... .+. +++|+
T Consensus 79 ~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~-~~~a~ 134 (159)
T d1a17a_ 79 KGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA-FERAI 134 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999999999999999888877543 334 44444
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=1.2e-15 Score=117.62 Aligned_cols=145 Identities=14% Similarity=0.082 Sum_probs=84.4
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Q psy8160 55 LRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEV 134 (324)
Q Consensus 55 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~ 134 (324)
+..|..+...|+|++|++.|.++ .|.++.++..+|.++..+|++++|+++|++++..+|... .+++++|.++..
T Consensus 9 ~~~g~~~~~~~d~~~Al~~~~~i--~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~----~a~~~~g~~~~~ 82 (192)
T d1hh8a_ 9 WNEGVLAADKKDWKGALDAFSAV--QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLA----VAYFQRGMLYYQ 82 (192)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTS--SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhh----hhHHHHHHHHHh
Confidence 34577777777777777776642 222334445555555555555555555555555554443 455555555555
Q ss_pred hhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHc
Q psy8160 135 QRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAV 214 (324)
Q Consensus 135 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 214 (324)
+|++++|+..|++++... +.+.. ..+..+|. .......++++++|.++...
T Consensus 83 ~g~~~~A~~~~~kAl~~~--~~n~~-~~~~~~~~--------------------------~~~~~~~e~~~n~a~~~~~~ 133 (192)
T d1hh8a_ 83 TEKYDLAIKDLKEALIQL--RGNQL-IDYKILGL--------------------------QFKLFACEVLYNIAFMYAKK 133 (192)
T ss_dssp TTCHHHHHHHHHHHHHTT--TTCSE-EECGGGTB--------------------------CCEEEHHHHHHHHHHHHHHT
T ss_pred hccHHHHHHHHHHHHHhC--ccCch-HHHHHhhh--------------------------hcccchHHHHHHHHHHHHHC
Confidence 555555555555555443 22110 00000000 01112247889999999999
Q ss_pred CCHHHHHHHHHHHHccCCCC
Q psy8160 215 GKVHDAFLAYRNSVEKSEGN 234 (324)
Q Consensus 215 ~~~~~A~~~~~~al~~~p~~ 234 (324)
|++++|+..+.+++.+.|+.
T Consensus 134 ~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 134 EEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp TCHHHHHHHHHHHHTTCCSG
T ss_pred CCHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999874
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=1.1e-16 Score=141.94 Aligned_cols=222 Identities=11% Similarity=0.029 Sum_probs=157.4
Q ss_pred HHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHH
Q psy8160 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLC 110 (324)
Q Consensus 32 ~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 110 (324)
+|+++|+++++++|++. ++++.+|.++..++++++| |+++| .||.........+.+.. ..|..+++.+++.
T Consensus 4 eA~q~~~qA~~l~p~~a---~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw~--~~y~~~ie~~r~~ 75 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMT---DSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLWN--HAFKNQITTLQGQ 75 (497)
T ss_dssp HHHHHHHHHHHHHGGGT---CSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHHH--HHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCH---HHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHHH--HHHHHHHHHHHHh
Confidence 79999999999998754 4689999999999999987 88999 99988777665554442 3467788888888
Q ss_pred HHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHH
Q psy8160 111 LIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCL 190 (324)
Q Consensus 111 l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~ 190 (324)
............ ....++.+....+.|+.|+..+.+++..+ |++ ...+..+|..+.. .++.++|+..+
T Consensus 76 ~k~~~~~~~~~~-~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~--~~~--~~~~~~lg~~~~~-------~~~~~~A~~~~ 143 (497)
T d1ya0a1 76 AKNRANPNRSEV-QANLSLFLEAASGFYTQLLQELCTVFNVD--LPC--RVKSSQLGIISNK-------QTHTSAIVKPQ 143 (497)
T ss_dssp HSCSSCTTTTHH-HHHHHHHHHHHHHHHHHHHHHHTC------------------------------------------C
T ss_pred cccccCccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCC--hhh--HHHHHHhHHHHHh-------CCCHHHHHHHH
Confidence 765433332221 22234667778899999999999999888 776 4488999988865 45899999999
Q ss_pred HHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH-----------
Q psy8160 191 QKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL----------- 259 (324)
Q Consensus 191 ~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~----------- 259 (324)
.+++..+| ..++..+|.++...|++++|+.+|++|+.++|+++.+|..+|.++...|+ +.+|+.+|
T Consensus 144 ~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~-~~~A~~~y~ral~~~~~~~ 220 (497)
T d1ya0a1 144 SSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGD-HLTTIFYYCRSIAVKFPFP 220 (497)
T ss_dssp CHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTC-HHHHHHHHHHHHSSSBCCH
T ss_pred HHHhCCCH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCC-HHHHHHHHHHHHhCCCCCH
Confidence 99988776 47889999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHhhHHHHHHcCCCC
Q psy8160 260 NKYRDLGDFLVINNIPT 276 (324)
Q Consensus 260 ~~~~~lg~~~~~~~~~~ 276 (324)
.++.+|+.++.+..+..
T Consensus 221 ~a~~nL~~~~~~~~~~~ 237 (497)
T d1ya0a1 221 AASTNLQKALSKALESR 237 (497)
T ss_dssp HHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 88899999988766443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=2.3e-16 Score=118.09 Aligned_cols=124 Identities=10% Similarity=0.054 Sum_probs=101.8
Q ss_pred hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHH
Q psy8160 160 ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWC 239 (324)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 239 (324)
+..+...|..++. .+++++|+.+|+++++++|+++.+|+.+|.++..+|++++|+..|+++++++|+++.+|.
T Consensus 10 a~~l~~~gn~~~~-------~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~ 82 (159)
T d1a17a_ 10 AEELKTQANDYFK-------AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY 82 (159)
T ss_dssp HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHH-------cCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHH
Confidence 4567777888877 559999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhcc-CChhhHHHHH
Q psy8160 240 SIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNN-SNREDYHQAL 316 (324)
Q Consensus 240 ~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~~~~~~~a~ 316 (324)
.+|.++...|+ +++ |+.+|++++.++|+++.+...+..... ...+.+.+++
T Consensus 83 ~~g~~~~~~g~------------------------~~e--A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~ 134 (159)
T d1a17a_ 83 RRAASNMALGK------------------------FRA--ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAI 134 (159)
T ss_dssp HHHHHHHHTTC------------------------HHH--HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC------------------------HHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888 445 777777788888877777666544321 2334455554
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.67 E-value=2.3e-14 Score=118.98 Aligned_cols=209 Identities=6% Similarity=0.007 Sum_probs=160.7
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHH--------------HhccHHHHHHHHHHHh-c-CCCCchhhHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFK--------------VNNEYDSALKHLTLCL-I-DASPCTFTKLEGLMF 94 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~--------------~~~~~~~A~~~~~~al-~-~~~~~~~~~~la~~~ 94 (324)
+.+...|++++...|.. +++|+..+.... ..+..++|...|++++ . .|.....+...+.+.
T Consensus 33 ~Rv~~vyerAl~~~~~~---~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~ 109 (308)
T d2onda1 33 KRVMFAYEQCLLVLGHH---PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 45777899999998764 456776665443 2345678899999999 4 677777888889999
Q ss_pred HhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhh
Q psy8160 95 KVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCID 174 (324)
Q Consensus 95 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~ 174 (324)
..+|+++.|...|++++...|.+. ..++...+.+....|+++.|.+.|++++... |.... .+...+......
T Consensus 110 ~~~~~~~~a~~i~~~~l~~~~~~~---~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~--~~~~~--~~~~~a~~e~~~- 181 (308)
T d2onda1 110 ESRMKYEKVHSIYNRLLAIEDIDP---TLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHH--VYVTAALMEYYC- 181 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSSCT---HHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTH--HHHHHHHHHHHT-
T ss_pred HhcccHHHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCcHH--HHHHHHHHHHHh-
Confidence 999999999999999998766653 2467888888889999999999999999888 76633 666666554321
Q ss_pred hhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH----HHHHhHHHHhhcCC
Q psy8160 175 TLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNAD----TWCSIGNKDFSNNS 250 (324)
Q Consensus 175 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~lg~~~~~~~~ 250 (324)
.++.+.|...|++++...|.++..|...+......|+++.|...|++++...|.++. .|..........|+
T Consensus 182 -----~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~ 256 (308)
T d2onda1 182 -----SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD 256 (308)
T ss_dssp -----SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSC
T ss_pred -----ccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCC
Confidence 237888999999999999999999999999999999999999999999998775543 55555555455555
Q ss_pred CHHHHH
Q psy8160 251 NREDYH 256 (324)
Q Consensus 251 ~~~~A~ 256 (324)
.+.+.
T Consensus 257 -~~~~~ 261 (308)
T d2onda1 257 -LASIL 261 (308)
T ss_dssp -HHHHH
T ss_pred -HHHHH
Confidence 44433
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.64 E-value=1.3e-13 Score=111.78 Aligned_cols=228 Identities=12% Similarity=0.090 Sum_probs=175.6
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHh----cccHHHHHHHHHHHHHhcCCCcccHHHHHH
Q psy8160 51 NEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKV----NNEYDSALKHLTLCLIDASPCTFTKLEVRF 126 (324)
Q Consensus 51 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 126 (324)
+++++.||..++..+|+++|+++|+++. +..+..+...+|.+|.. ..++..|..+++.+.....+ .+..
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa-~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~------~a~~ 74 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKAC-DLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYS------NGCH 74 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH------HHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccccc------chhh
Confidence 4578999999999999999999999997 23467788889999987 67899999999988765432 5677
Q ss_pred HHHHHHHH----hhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHH
Q psy8160 127 HIAHLHEV----QRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQ 202 (324)
Q Consensus 127 ~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 202 (324)
.+|.++.. ..+.+.|...++++.... +. .+...++..+.... .. ......|...+.+... +.++.
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g--~~----~a~~~l~~~~~~~~-~~--~~~~~~a~~~~~~~~~--~~~~~ 143 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLK--YA----EGCASLGGIYHDGK-VV--TRDFKKAVEYFTKACD--LNDGD 143 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CH----HHHHHHHHHHHHCS-SS--CCCHHHHHHHHHHHHH--TTCHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhh--hh----hHHHhhcccccCCC-cc--cchhHHHHHHhhhhhc--ccccc
Confidence 78877764 357888999999998766 43 26666766664311 11 3367778888887655 45678
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhh----cCCCHHHHHHHH---------HHHHhh
Q psy8160 203 SLYLLGRCFAA----VGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFS----NNSNREDYHQAL---------NKYRDL 265 (324)
Q Consensus 203 ~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~~A~~~~---------~~~~~l 265 (324)
.++.+|.++.. ..+...+..+++.+.+ +.++.+++.+|.+|.. ..+ +++|+.+| .++++|
T Consensus 144 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d-~~~A~~~~~~aa~~g~~~a~~~L 220 (265)
T d1ouva_ 144 GCTILGSLYDAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKN-FKEALARYSKACELENGGGCFNL 220 (265)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCC-HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhhhhhhccCCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccc-hhhhhhhHhhhhcccCHHHHHHH
Confidence 88999999986 4667788888888865 5689999999999887 567 99999999 888999
Q ss_pred HHHHHH----cCCCCcchHHHHHHHhhhcCCChhhhhhchhh
Q psy8160 266 GDFLVI----NNIPTSNNNRQCYNSYSTSIASCKHINNNKDF 303 (324)
Q Consensus 266 g~~~~~----~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 303 (324)
|.+|.. ..++++ |+++|++|.+..+.. +...+..
T Consensus 221 G~~y~~G~g~~~n~~~--A~~~~~kAa~~g~~~--A~~~l~~ 258 (265)
T d1ouva_ 221 GAMQYNGEGVTRNEKQ--AIENFKKGCKLGAKG--ACDILKQ 258 (265)
T ss_dssp HHHHHTTSSSSCCSTT--HHHHHHHHHHHTCHH--HHHHHHT
T ss_pred HHHHHcCCCCccCHHH--HHHHHHHHHHCcCHH--HHHHHHH
Confidence 999986 347888 999999999877653 3444443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=1.9e-15 Score=107.05 Aligned_cols=114 Identities=9% Similarity=0.004 Sum_probs=99.1
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc--HHHH
Q psy8160 127 HIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS--GQSL 204 (324)
Q Consensus 127 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~ 204 (324)
.++..+...+++++|.+.|++++..+ |++ +.+++++|+++..... .+++++|+..|++++..+|.+ .++|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~--p~~--~~~~~n~a~~L~~s~~----~~d~~~Ai~~l~~~l~~~~~~~~~~~~ 75 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG--SVS--KSTQFEYAWCLVRTRY----NDDIRKGIVLLEELLPKGSKEEQRDYV 75 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS--CCC--HHHHHHHHHHHTTSSS----HHHHHHHHHHHHHHTTTSCHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC--CCC--HHHHHHHHHHHHHhcc----hHHHHHHHHHHHHHHhccCCchHHHHH
Confidence 45667889999999999999999999 988 5599999999965222 337889999999999998765 4689
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhc
Q psy8160 205 YLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSN 248 (324)
Q Consensus 205 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 248 (324)
+++|.+|..+|++++|+.+|+++++++|++..+...++.+..+.
T Consensus 76 ~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~ 119 (122)
T d1nzna_ 76 FYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM 119 (122)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888776543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.63 E-value=4e-16 Score=121.30 Aligned_cols=111 Identities=15% Similarity=0.184 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHH
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQ 202 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 202 (324)
+.+...|..++..|+|++|+..|++++..+ |.+ +.++.++|.+|.. .+++++|+.+|+++++++|+++.
T Consensus 5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~--p~~--~~~~~~lg~~y~~-------~~~~~~Ai~~~~~al~l~p~~~~ 73 (201)
T d2c2la1 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN--PLV--AVYYTNRALCYLK-------MQQPEQALADCRRALELDGQSVK 73 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHTTSCTTCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC--HHHHHhHHHHHhh-------hhhhhhhhHHHHHHHHhCCCcHH
Confidence 557788999999999999999999999999 888 5599999999977 55999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHH
Q psy8160 203 SLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNK 244 (324)
Q Consensus 203 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 244 (324)
+|+.+|.++..+|++++|+..|++++.++|++...+...+..
T Consensus 74 a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 115 (201)
T d2c2la1 74 AHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPS 115 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 999999999999999999999999999988665444333333
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.63 E-value=6.6e-16 Score=120.08 Aligned_cols=92 Identities=14% Similarity=0.196 Sum_probs=87.1
Q ss_pred hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHH
Q psy8160 160 ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWC 239 (324)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 239 (324)
+..+...|..++. .|++++|+..|+++++++|.++.+|+++|.+|...|++++|+..|++|++++|+++.+|+
T Consensus 4 a~~l~~~Gn~~~~-------~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~ 76 (201)
T d2c2la1 4 AQELKEQGNRLFV-------GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF 76 (201)
T ss_dssp HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHH
T ss_pred HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHH
Confidence 5678899999987 569999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHhhcCCCHHHHHHHH
Q psy8160 240 SIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 240 ~lg~~~~~~~~~~~~A~~~~ 259 (324)
++|.+|..+|+ +++|+..|
T Consensus 77 ~lg~~~~~l~~-~~~A~~~~ 95 (201)
T d2c2la1 77 FLGQCQLEMES-YDEAIANL 95 (201)
T ss_dssp HHHHHHHHTTC-HHHHHHHH
T ss_pred HHHHHHHHCCC-HHHHHHHH
Confidence 99999999999 88888777
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=7.4e-15 Score=110.87 Aligned_cols=126 Identities=14% Similarity=0.069 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCc-----------hhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHH
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVH-----------LKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQ 191 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~ 191 (324)
..+...|..++..|++++|+..|++++...+.... ....++.++|.+|.. .+++++|+.+++
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k-------~~~~~~A~~~~~ 86 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLK-------LQAFSAAIESCN 86 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHH-------TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHh-------hhhcccccchhh
Confidence 45667788888888888888888888877521111 113467788888877 559999999999
Q ss_pred HHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHH
Q psy8160 192 KSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYH 256 (324)
Q Consensus 192 ~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~ 256 (324)
+++.++|.++.+++.+|.++..+|++++|+..|+++++++|+++.+...++.+....+. ..+..
T Consensus 87 ~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~-~~~~e 150 (170)
T d1p5qa1 87 KALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRR-QLARE 150 (170)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH-HHHHH
T ss_pred hhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999999999999999999999999999999888777 55543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.60 E-value=6.1e-15 Score=108.11 Aligned_cols=121 Identities=13% Similarity=0.195 Sum_probs=103.0
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhc---ccchhHHHHHHHHHHHhhhCCccHHHHHHH
Q psy8160 131 LHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLG---EKSHRETLAIHCLQKSIEADPKSGQSLYLL 207 (324)
Q Consensus 131 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 207 (324)
.+.+.+.|++|+..|+++++.+ |++ +++++++|.++....... +..+.+++|+..|+++++++|+++.+|+++
T Consensus 6 ~~~r~~~fe~A~~~~e~al~~~--P~~--~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~l 81 (145)
T d1zu2a1 6 EFDRILLFEQIRQDAENTYKSN--PLD--ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCI 81 (145)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHccHHHHHHHHHHHHhhC--Ccc--hHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhH
Confidence 3567788999999999999999 998 559999999986543222 124578999999999999999999999999
Q ss_pred HHHHHHcCC-----------HHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHH
Q psy8160 208 GRCFAAVGK-----------VHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYH 256 (324)
Q Consensus 208 g~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~ 256 (324)
|.+|..+|+ +++|+.+|+++++++|++..++..|+.+....+. +.++.
T Consensus 82 G~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~-~~e~~ 140 (145)
T d1zu2a1 82 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQL-HAEAY 140 (145)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHH-HHHHH
T ss_pred HHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHH-HHHHH
Confidence 999988754 6899999999999999999999999998877766 66653
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=1.4e-15 Score=109.22 Aligned_cols=109 Identities=14% Similarity=0.082 Sum_probs=97.2
Q ss_pred hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHH
Q psy8160 160 ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWC 239 (324)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 239 (324)
+..+..+|..++. .+++++|+.+|+++++++|.++.++.++|.+|..+|++++|+..|+++++++|.++..|.
T Consensus 4 a~~~k~~G~~~~~-------~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~ 76 (128)
T d1elra_ 4 ALKEKELGNDAYK-------KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR 76 (128)
T ss_dssp HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHH
Confidence 5567788999987 559999999999999999999999999999999999999999999999999999998888
Q ss_pred HhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCCh
Q psy8160 240 SIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASC 294 (324)
Q Consensus 240 ~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (324)
.+|.+|. .+|.++...+++++ |+.+|++++..+|+.
T Consensus 77 ~~a~~~~-----------------~lg~~~~~~~~~~~--A~~~~~kal~~~~~~ 112 (128)
T d1elra_ 77 QIAKAYA-----------------RIGNSYFKEEKYKD--AIHFYNKSLAEHRTP 112 (128)
T ss_dssp HHHHHHH-----------------HHHHHHHHTTCHHH--HHHHHHHHHHHCCCH
T ss_pred HHHHHHH-----------------HHHHHHHHhCCHHH--HHHHHHHHHhcCCCH
Confidence 8886655 45557888999999 999999999988764
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.58 E-value=6.8e-15 Score=102.91 Aligned_cols=91 Identities=11% Similarity=0.028 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHH
Q psy8160 161 DICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCS 240 (324)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 240 (324)
...+.+|..+.. .|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|+++++++|+++.+|+.
T Consensus 17 ~~~~~~g~~~~~-------~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 89 (112)
T d1hxia_ 17 ENPMEEGLSMLK-------LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAA 89 (112)
T ss_dssp SCHHHHHHHHHH-------TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHH-------HhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHH
Confidence 466788998877 5599999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhcCCCHHHHHHHH
Q psy8160 241 IGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 241 lg~~~~~~~~~~~~A~~~~ 259 (324)
+|.+|...|+ +++|++++
T Consensus 90 la~~y~~~g~-~~~A~~~l 107 (112)
T d1hxia_ 90 LAVSHTNEHN-ANAALASL 107 (112)
T ss_dssp HHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHCCC-HHHHHHHH
Confidence 9999999999 99998876
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.58 E-value=3.5e-14 Score=105.16 Aligned_cols=121 Identities=15% Similarity=0.005 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCc------------hhhHHHHHHHHHHHhhhhhcccchhHHHHHHHH
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVH------------LKADICRQLGWMYHCIDTLGEKSHRETLAIHCL 190 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~ 190 (324)
..+...|..++..|+|.+|+..|++++........ ....++.++|.+|+. .+++++|+.++
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~-------l~~~~~Al~~~ 90 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNK-------NKDYPKAIDHA 90 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHH-------TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHH-------hcccchhhhhh
Confidence 34556677888888888888888888765411110 012467789999977 55999999999
Q ss_pred HHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCC
Q psy8160 191 QKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNS 250 (324)
Q Consensus 191 ~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 250 (324)
+++++++|.+..+|+.+|.++..+|++++|+..|+++++++|+++.++..++.+..+.++
T Consensus 91 ~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~ 150 (153)
T d2fbna1 91 SKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE 150 (153)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred hccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999888766543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.58 E-value=2.1e-14 Score=108.33 Aligned_cols=121 Identities=13% Similarity=0.161 Sum_probs=95.9
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHhcCC--------------CCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHH
Q psy8160 126 FHIAHLHEVQRKYKTAKDSYEQLLKEDD--------------LPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQ 191 (324)
Q Consensus 126 ~~la~~~~~~~~~~~A~~~~~~al~~~~--------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~ 191 (324)
...|..+...|++.+|+..|++++.... .|.. ..++.++|.++.. .+++++|+..++
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~--~~~~~nla~~~~~-------~~~~~~Ai~~~~ 101 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVA--LSCVLNIGACKLK-------MSDWQGAVDSCL 101 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHH--HHHHHHHHHHHHH-------TTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhh--HHHHHHHHHHHHh-------hcccchhhhhhh
Confidence 3445555555555555555555543210 0222 4588889999977 559999999999
Q ss_pred HHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHH
Q psy8160 192 KSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYH 256 (324)
Q Consensus 192 ~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~ 256 (324)
++++++|.++.+|+.+|.++..+|++++|+..|+++++++|+++.+...++.+...... ..++.
T Consensus 102 ~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~-~~~~~ 165 (169)
T d1ihga1 102 EALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA-QKDKE 165 (169)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH-HHHHH
T ss_pred hhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999999999999999999999999999999887776 66554
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.57 E-value=8.8e-15 Score=102.34 Aligned_cols=95 Identities=18% Similarity=0.165 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHH
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQ 202 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 202 (324)
+..+.+|.++...|++++|+..|++++..+ |++ +.++..+|.++.. .+++++|+.+|+++++++|.++.
T Consensus 17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~--~~a~~~lg~~~~~-------~~~~~~A~~~~~~al~~~p~~~~ 85 (112)
T d1hxia_ 17 ENPMEEGLSMLKLANLAEAALAFEAVCQKE--PER--EEAWRSLGLTQAE-------NEKDGLAIIALNHARMLDPKDIA 85 (112)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhhcccc--ccc--chhhhhhhhhhhh-------hhhHHHhhccccccccccccccc
Confidence 456789999999999999999999999999 988 5599999999977 55999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy8160 203 SLYLLGRCFAAVGKVHDAFLAYRNSV 228 (324)
Q Consensus 203 ~~~~lg~~~~~~~~~~~A~~~~~~al 228 (324)
+|+.+|.+|...|++++|++.+++.|
T Consensus 86 a~~~la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 86 VHAALAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 99999999999999999999999976
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.57 E-value=5.7e-14 Score=105.75 Aligned_cols=124 Identities=15% Similarity=0.116 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCc-----------hhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHH
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVH-----------LKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQ 191 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~ 191 (324)
..+...|..++..|++.+|+..|++++........ ....++.++|.+|.. .+++++|+.+++
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~-------l~~~~~Ai~~~~ 88 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLK-------LREYTKAVECCD 88 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHH-------TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHH-------hhhcccchhhhh
Confidence 55667788888888888888888888865311110 113467788988877 559999999999
Q ss_pred HHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHH
Q psy8160 192 KSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNRED 254 (324)
Q Consensus 192 ~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~ 254 (324)
+++.++|.+..+++.+|.++..+|++++|+..|++++.++|+++.++..++.+....+. +.+
T Consensus 89 ~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~-~~e 150 (168)
T d1kt1a1 89 KALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKE-HNE 150 (168)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH-HHH
T ss_pred hhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh-HHH
Confidence 99999999999999999999999999999999999999999999999999999887776 544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.55 E-value=1.9e-15 Score=110.84 Aligned_cols=110 Identities=10% Similarity=0.051 Sum_probs=93.4
Q ss_pred chhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcC
Q psy8160 180 SHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAV----------GKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNN 249 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 249 (324)
.+.+++|+..|+++++++|+++++++.+|.++... +.+++|+..|++|++++|+++.+|+++|.+|...|
T Consensus 10 ~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g 89 (145)
T d1zu2a1 10 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 89 (145)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcc
Confidence 44899999999999999999999999999999854 55688999999999999999999999999998877
Q ss_pred CCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhh
Q psy8160 250 SNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFS 304 (324)
Q Consensus 250 ~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 304 (324)
. +. +......+.+++ |+++|+++++++|+++.++..++..
T Consensus 90 ~-~~------------~~~~~~~~~~~~--A~~~~~kal~l~P~~~~~~~~L~~~ 129 (145)
T d1zu2a1 90 F-LT------------PDETEAKHNFDL--ATQFFQQAVDEQPDNTHYLKSLEMT 129 (145)
T ss_dssp H-HC------------CCHHHHHHHHHH--HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred c-ch------------hhHHHHHHhHHH--hhhhhhcccccCCCHHHHHHHHHHH
Confidence 5 22 111222334678 9999999999999999998888764
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.54 E-value=1.7e-12 Score=107.44 Aligned_cols=215 Identities=8% Similarity=-0.067 Sum_probs=171.7
Q ss_pred HHHHHhhhhccccccchhhhHhHHH--------------H--HHHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccH
Q psy8160 4 VIQKNLVEGIVTSVRVPKLQQFGKT--------------L--NIKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEY 67 (324)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~~~~--------------~--~~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~ 67 (324)
+.++.+..-+.+|++|.....+... . .++|...|+++++..+ |....+++..+.+...+|++
T Consensus 38 vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~--p~~~~l~~~ya~~~~~~~~~ 115 (308)
T d2onda1 38 AYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL--KKNMLLYFAYADYEESRMKY 115 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT--TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHhcccH
Confidence 3456666667777776665543211 0 1789999999998643 23456889999999999999
Q ss_pred HHHHHHHHHHh-cCCCCch-hhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH-HhhcHHHHHHH
Q psy8160 68 DSALKHLTLCL-IDASPCT-FTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHE-VQRKYKTAKDS 144 (324)
Q Consensus 68 ~~A~~~~~~al-~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~ 144 (324)
+.|...|.+++ ..|.+.. .+...+.+....|+++.|.+.|++++...|.+. ..+...|.... ..|+.+.|..+
T Consensus 116 ~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~----~~~~~~a~~e~~~~~~~~~a~~i 191 (308)
T d2onda1 116 EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRH----HVYVTAALMEYYCSKDKSVAFKI 191 (308)
T ss_dssp HHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCT----HHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHhccCHHHHHHH
Confidence 99999999999 8887754 577789999999999999999999998888776 67777777644 45899999999
Q ss_pred HHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH----HHHHHHHHHHHHcCCHHHH
Q psy8160 145 YEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG----QSLYLLGRCFAAVGKVHDA 220 (324)
Q Consensus 145 ~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~lg~~~~~~~~~~~A 220 (324)
|++++..+ |.+ ...+...+..... .|+.+.|...|++++...|.++ ..|......-...|+.+.+
T Consensus 192 ~e~~l~~~--p~~--~~~w~~y~~~~~~-------~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~ 260 (308)
T d2onda1 192 FELGLKKY--GDI--PEYVLAYIDYLSH-------LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 260 (308)
T ss_dssp HHHHHHHH--TTC--HHHHHHHHHHHHT-------TCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHhh--hhh--HHHHHHHHHHHHH-------cCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999998 887 4488888877755 4489999999999999877554 4677777777788999999
Q ss_pred HHHHHHHHccCCCCH
Q psy8160 221 FLAYRNSVEKSEGNA 235 (324)
Q Consensus 221 ~~~~~~al~~~p~~~ 235 (324)
...++++.+..|...
T Consensus 261 ~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 261 LKVEKRRFTAFREEY 275 (308)
T ss_dssp HHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHCcccc
Confidence 999999999888663
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=2.6e-13 Score=102.22 Aligned_cols=137 Identities=16% Similarity=0.157 Sum_probs=107.7
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Q psy8160 51 NEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIA 129 (324)
Q Consensus 51 ~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la 129 (324)
...+...|..++..|+|++|+.+|++++ ..|........... ... .+ ...++.++|
T Consensus 13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~----------~~~----~~---------~~~~~~nla 69 (170)
T d1p5qa1 13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQ----------KAQ----AL---------RLASHLNLA 69 (170)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHH----------HHH----HH---------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHh----------hhc----hh---------HHHHHHHHH
Confidence 3456788999999999999999999998 66655433221110 000 00 124678899
Q ss_pred HHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHH
Q psy8160 130 HLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGR 209 (324)
Q Consensus 130 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~ 209 (324)
.||..+|++++|+..+++++.++ |++ +.+++.+|.++.. .|++++|+.+|+++++++|+++.+...++.
T Consensus 70 ~~y~k~~~~~~A~~~~~~al~~~--p~~--~~a~~~~g~~~~~-------~g~~~~A~~~~~~al~l~P~n~~~~~~l~~ 138 (170)
T d1p5qa1 70 MCHLKLQAFSAAIESCNKALELD--SNN--EKGLSRRGEAHLA-------VNDFELARADFQKVLQLYPNNKAAKTQLAV 138 (170)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHhhhhcccccchhhhhhhcc--ccc--hhhhHHHHHHHHH-------hhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999999999999999 988 4499999999987 559999999999999999999999999999
Q ss_pred HHHHcCCHHHHH
Q psy8160 210 CFAAVGKVHDAF 221 (324)
Q Consensus 210 ~~~~~~~~~~A~ 221 (324)
+....+...+..
T Consensus 139 ~~~~~~~~~~~e 150 (170)
T d1p5qa1 139 CQQRIRRQLARE 150 (170)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 987776655443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=4.1e-14 Score=100.10 Aligned_cols=110 Identities=12% Similarity=-0.029 Sum_probs=71.7
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH---hhcHHHHHHHHHHHHhcCCCCCchhhHHHHHH
Q psy8160 90 EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEV---QRKYKTAKDSYEQLLKEDDLPVHLKADICRQL 166 (324)
Q Consensus 90 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l 166 (324)
++..+...+++++|++.|++++..+|.+. ++++++|.++.. .+++++|+..|++++..+ |.+....+++.+
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~----~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~--~~~~~~~~~~~L 78 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAGSVSK----STQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYL 78 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCH----HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS--CHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcc--CCchHHHHHHHH
Confidence 34445555666666666666666666655 667777777654 345566777777777766 544334577777
Q ss_pred HHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHH
Q psy8160 167 GWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFA 212 (324)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~ 212 (324)
|.+|.. .|++++|+.+|+++++++|++..+...++.+..
T Consensus 79 g~~y~~-------~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~ 117 (122)
T d1nzna_ 79 AVGNYR-------LKEYEKALKYVRGLLQTEPQNNQAKELERLIDK 117 (122)
T ss_dssp HHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHH-------HhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 777765 447777777777777777777777766665544
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.48 E-value=9e-12 Score=100.63 Aligned_cols=219 Identities=14% Similarity=0.182 Sum_probs=168.8
Q ss_pred ccccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHH----hccHHHHHHHHHHHhcCCCCchhhH
Q psy8160 15 TSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKV----NNEYDSALKHLTLCLIDASPCTFTK 88 (324)
Q Consensus 15 ~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~ 88 (324)
+|+.+..||....... ++|+++|+++.+.. +.++++.||.+|.. ..++..|..+++.+. .+.+..+..
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g-----~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~-~~~~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK-----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC-DLNYSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTTCHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccc-cccccchhh
Confidence 4566677776555444 99999999998765 45689999999997 779999999999887 223445666
Q ss_pred HHHHHHHh----cccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH----hhcHHHHHHHHHHHHhcCCCCCchhh
Q psy8160 89 LEGLMFKV----NNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEV----QRKYKTAKDSYEQLLKEDDLPVHLKA 160 (324)
Q Consensus 89 ~la~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~ 160 (324)
.+|.++.. ..+.+.|...++++....+. .+...+|..+.. ......|...+.+..... . .
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~------~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~----~ 142 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYA------EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--D----G 142 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH------HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--C----H
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhhh------hHHHhhcccccCCCcccchhHHHHHHhhhhhccc--c----c
Confidence 77777764 46899999999999865443 556777777764 345777888888776644 2 4
Q ss_pred HHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCCHH
Q psy8160 161 DICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAA----VGKVHDAFLAYRNSVEKSEGNAD 236 (324)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~ 236 (324)
..+..+|.++.... ....+...+..+++.+.+ +.++.+++.+|.++.. ..++++|+.+|+++.+. .++.
T Consensus 143 ~~~~~L~~~~~~~~---~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~ 215 (265)
T d1ouva_ 143 DGCTILGSLYDAGR---GTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGG 215 (265)
T ss_dssp HHHHHHHHHHHHTS---SSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHH
T ss_pred chhhhhhhhhccCC---Ccccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHH
Confidence 48889999886521 123478889999999875 4578999999999987 67999999999999887 4799
Q ss_pred HHHHhHHHHhh----cCCCHHHHHHHH
Q psy8160 237 TWCSIGNKDFS----NNSNREDYHQAL 259 (324)
Q Consensus 237 ~~~~lg~~~~~----~~~~~~~A~~~~ 259 (324)
++++||.+|.. ..+ +++|+++|
T Consensus 216 a~~~LG~~y~~G~g~~~n-~~~A~~~~ 241 (265)
T d1ouva_ 216 GCFNLGAMQYNGEGVTRN-EKQAIENF 241 (265)
T ss_dssp HHHHHHHHHHTTSSSSCC-STTHHHHH
T ss_pred HHHHHHHHHHcCCCCccC-HHHHHHHH
Confidence 99999999986 346 88999987
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.47 E-value=1.2e-12 Score=96.60 Aligned_cols=129 Identities=17% Similarity=0.119 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Q psy8160 53 VHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHL 131 (324)
Q Consensus 53 ~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~ 131 (324)
.+...|..++..|+|.+|+..|++++ ..|....... .........+ ...++.++|.+
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~-------------~~~~~~~~~~---------~~~~~~Nla~~ 76 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDD-------------QILLDKKKNI---------EISCNLNLATC 76 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCC-------------HHHHHHHHHH---------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhh-------------HHHHHhhhhH---------HHHHHhhHHHH
Confidence 46678888999999999999999888 5443322111 0000011111 12567899999
Q ss_pred HHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHH
Q psy8160 132 HEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCF 211 (324)
Q Consensus 132 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~ 211 (324)
|..+|++++|+..+++++..+ |.+.. +++++|.++.. .|++++|+.+|+++++++|+++.+...++.+.
T Consensus 77 ~~~l~~~~~Al~~~~~al~~~--p~~~k--a~~~~g~~~~~-------lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 145 (153)
T d2fbna1 77 YNKNKDYPKAIDHASKVLKID--KNNVK--ALYKLGVANMY-------FGFLEEAKENLYKAASLNPNNLDIRNSYELCV 145 (153)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--TTCHH--HHHHHHHHHHH-------HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHhcccchhhhhhhcccccc--chhhh--hhHHhHHHHHH-------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999999999999 98854 99999999977 55999999999999999999999999998876
Q ss_pred HHc
Q psy8160 212 AAV 214 (324)
Q Consensus 212 ~~~ 214 (324)
..+
T Consensus 146 ~kl 148 (153)
T d2fbna1 146 NKL 148 (153)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=7.4e-13 Score=94.70 Aligned_cols=101 Identities=18% Similarity=0.180 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcc---cHHHHHHH
Q psy8160 52 EVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTF---TKLEVRFH 127 (324)
Q Consensus 52 ~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~---~~~~~~~~ 127 (324)
..+-.+|..++..|+|++|+.+|++++ .+|.+..++..+|.+|..+|++++|+..+++++...|.... ..+.++..
T Consensus 5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 356789999999999999999999999 99999999999999999999999999999999987766543 33467889
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHhcC
Q psy8160 128 IAHLHEVQRKYKTAKDSYEQLLKED 152 (324)
Q Consensus 128 la~~~~~~~~~~~A~~~~~~al~~~ 152 (324)
+|.++...+++++|+++|++++..+
T Consensus 85 lg~~~~~~~~~~~A~~~~~kal~~~ 109 (128)
T d1elra_ 85 IGNSYFKEEKYKDAIHFYNKSLAEH 109 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999887
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.46 E-value=2.1e-12 Score=96.94 Aligned_cols=135 Identities=13% Similarity=0.076 Sum_probs=105.0
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Q psy8160 51 NEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIA 129 (324)
Q Consensus 51 ~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la 129 (324)
++.+...|..++..|+|++|+..|++++ ..|........ ...... . ....++.++|
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~----------~~~~~~----~---------~~~~~~~Nla 71 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEK----------ESKASE----S---------FLLAAFLNLA 71 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHH----------HHHHHH----H---------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchh----------hhhhcc----h---------hHHHHHHhHH
Confidence 4567788999999999999999999888 43332221110 000000 0 0125678899
Q ss_pred HHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHH
Q psy8160 130 HLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGR 209 (324)
Q Consensus 130 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~ 209 (324)
.||..+|++++|+..+++++.++ |.+.. +++.+|.++.. .|++++|+..|++++.++|+++.++..++.
T Consensus 72 ~~~~~l~~~~~Ai~~~~~al~l~--p~~~~--a~~~~~~~~~~-------l~~~~~A~~~~~~al~l~P~n~~~~~~l~~ 140 (168)
T d1kt1a1 72 MCYLKLREYTKAVECCDKALGLD--SANEK--GLYRRGEAQLL-------MNEFESAKGDFEKVLEVNPQNKAARLQIFM 140 (168)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTCHH--HHHHHHHHHHH-------TTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHHHHhhhcccchhhhhhhhhcc--cchHH--HHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999999999999999 98854 99999999977 559999999999999999999999999999
Q ss_pred HHHHcCCHHH
Q psy8160 210 CFAAVGKVHD 219 (324)
Q Consensus 210 ~~~~~~~~~~ 219 (324)
+....+.+.+
T Consensus 141 ~~~~~~~~~e 150 (168)
T d1kt1a1 141 CQKKAKEHNE 150 (168)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhHHH
Confidence 9877765543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.45 E-value=6.3e-13 Score=100.01 Aligned_cols=134 Identities=16% Similarity=0.095 Sum_probs=102.2
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Q psy8160 54 HLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLH 132 (324)
Q Consensus 54 ~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~ 132 (324)
+...|..++..|+|++|+..|++++ ..+.. .+...........| ....++.++|.++
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~------------------~~~~~~~~~~~~~~----~~~~~~~nla~~~ 87 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGS------------------RAAAEDADGAKLQP----VALSCVLNIGACK 87 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------------HHHSCHHHHGGGHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh------------------hhhhhhHHHHHhCh----hhHHHHHHHHHHH
Confidence 4567888888899999999998776 22111 00000011111111 2236788999999
Q ss_pred HHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHH
Q psy8160 133 EVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFA 212 (324)
Q Consensus 133 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~ 212 (324)
...|++++|+..|+++++++ |++ +.+++++|.++.. .+++++|+..|+++++++|+++.+...++.+..
T Consensus 88 ~~~~~~~~Ai~~~~~al~~~--p~~--~~a~~~~g~~~~~-------l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~ 156 (169)
T d1ihga1 88 LKMSDWQGAVDSCLEALEID--PSN--TKALYRRAQGWQG-------LKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 156 (169)
T ss_dssp HHTTCHHHHHHHHHHHHTTC--TTC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred Hhhcccchhhhhhhhhhhhh--hhh--hhHHHhHHHHHHH-------ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999999999 988 5599999999977 559999999999999999999999999999887
Q ss_pred HcCCHHHH
Q psy8160 213 AVGKVHDA 220 (324)
Q Consensus 213 ~~~~~~~A 220 (324)
......++
T Consensus 157 ~l~~~~~~ 164 (169)
T d1ihga1 157 KIKAQKDK 164 (169)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76655544
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=4.2e-12 Score=85.47 Aligned_cols=82 Identities=11% Similarity=0.048 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q psy8160 160 ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS-------GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSE 232 (324)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 232 (324)
++.++.+|.+++. .|++++|+.+|+++++..|.+ .+++.++|.++...|++++|+..|+++++++|
T Consensus 5 addc~~lG~~~~~-------~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P 77 (95)
T d1tjca_ 5 AEDSFELGKVAYT-------EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (95)
T ss_dssp HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCc
Confidence 5678999999988 559999999999999876543 57899999999999999999999999999999
Q ss_pred CCHHHHHHhHHHHhhc
Q psy8160 233 GNADTWCSIGNKDFSN 248 (324)
Q Consensus 233 ~~~~~~~~lg~~~~~~ 248 (324)
+++.++.+++.+...+
T Consensus 78 ~~~~a~~Nl~~~~~~l 93 (95)
T d1tjca_ 78 EHQRANGNLKYFEYIM 93 (95)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999998776543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.31 E-value=2.4e-12 Score=95.36 Aligned_cols=36 Identities=8% Similarity=-0.189 Sum_probs=31.1
Q ss_pred HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhh
Q psy8160 260 NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHI 297 (324)
Q Consensus 260 ~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 297 (324)
.+++++|.+|...|++++ |+..|++|+++.|.....
T Consensus 101 ~a~~~~g~~~~~lg~~ee--A~~~~~~Al~l~~~~~~~ 136 (156)
T d2hr2a1 101 SAVYSRALALDGLGRGAE--AMPEFKKVVEMIEERKGE 136 (156)
T ss_dssp HHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHHCCSC
T ss_pred HHHhhhHHHHHHHHHHHH--HHHHHHHHHHhhHHhhch
Confidence 467889999999999999 999999999998876543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.21 E-value=2.9e-11 Score=89.40 Aligned_cols=99 Identities=15% Similarity=0.101 Sum_probs=80.9
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHhcCCCCCch----------hhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhh
Q psy8160 127 HIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHL----------KADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEA 196 (324)
Q Consensus 127 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 196 (324)
..|..++..|+|++|+..|++++++. |... .+.++.++|.+|.. .|++++|+..+++++.+
T Consensus 14 ~~g~~~~~~g~y~~Ai~~y~~Al~i~--~~~~~~~~~~~~~~~a~~~~nlg~~~~~-------lg~~~~A~~~~~~al~~ 84 (156)
T d2hr2a1 14 SDAQRQLVAGEYDEAAANCRRAMEIS--HTMPPEEAFDHAGFDAFCHAGLAEALAG-------LRSFDEALHSADKALHY 84 (156)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTTSCCCHHHHHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--hhhhhhhhcccchhHHHHHHHHHHHHHH-------cCccchhhHhhhhhhhc
Confidence 34888889999999999999999876 3321 24688899999977 55899999999998876
Q ss_pred CCc-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q psy8160 197 DPK-----------SGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN 234 (324)
Q Consensus 197 ~~~-----------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 234 (324)
.|. ...+++++|.+|..+|++++|+..|++++++.|..
T Consensus 85 ~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 85 FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred ccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 442 23578999999999999999999999999987654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=99.19 E-value=1.7e-11 Score=98.45 Aligned_cols=121 Identities=12% Similarity=0.030 Sum_probs=110.0
Q ss_pred chhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 180 SHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
.|++++|+..++++++.+|.++..+..+|.++...|++++|+..|+++++++|++...+..++.++...+. ..++...+
T Consensus 9 ~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~-~~~a~~~~ 87 (264)
T d1zbpa1 9 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQA-RKDFAQGA 87 (264)
T ss_dssp TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH-HHHHTTSC
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccc-cHHHHHHh
Confidence 56999999999999999999999999999999999999999999999999999999999999999988888 77765544
Q ss_pred ------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhh
Q psy8160 260 ------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDF 303 (324)
Q Consensus 260 ------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 303 (324)
..+...+.++...|++++ |+..++++.+..|+.+...+...+
T Consensus 88 ~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~--A~~~~~~a~e~~p~~~~~~~~~~f 141 (264)
T d1zbpa1 88 ATAKVLGENEELTKSLVSFNLSMVSQDYEQ--VSELALQIEELRQEKGFLANDTSF 141 (264)
T ss_dssp CCEECCCSCHHHHHHHHHHHHHHHHTCHHH--HHHHHHHHHHHCCCCCEEETTEEE
T ss_pred hhhhcccCchHHHHHHHHHHHHHhCCCHHH--HHHHHHHHHhcCCCCCccccccCH
Confidence 556778889999999999 999999999999999888776554
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=7e-11 Score=79.29 Aligned_cols=86 Identities=17% Similarity=0.113 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCC---CCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCC
Q psy8160 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDD---LPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADP 198 (324)
Q Consensus 122 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 198 (324)
++-++.+|.++...|++.+|+..|++++...+ .+....+.++.++|.++.. .|++++|+.+++++++++|
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~-------~g~~~~A~~~y~~aL~l~P 77 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ-------QGDLDKALLLTKKLLELDP 77 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHh-------cCChHHHHHHHHHHHHhCc
Confidence 36689999999999999999999999998751 1122236799999999987 5599999999999999999
Q ss_pred ccHHHHHHHHHHHHHc
Q psy8160 199 KSGQSLYLLGRCFAAV 214 (324)
Q Consensus 199 ~~~~~~~~lg~~~~~~ 214 (324)
+++.++.+++.+...+
T Consensus 78 ~~~~a~~Nl~~~~~~l 93 (95)
T d1tjca_ 78 EHQRANGNLKYFEYIM 93 (95)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999998765443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.94 E-value=2.6e-09 Score=85.44 Aligned_cols=132 Identities=10% Similarity=-0.037 Sum_probs=100.7
Q ss_pred HHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhh
Q psy8160 94 FKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCI 173 (324)
Q Consensus 94 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~ 173 (324)
....|++++|+..++++++..|.+. .++..+|.++...|++++|+..|+++++.+ |+.. .++..++.++..
T Consensus 6 aL~~G~l~eAl~~l~~al~~~P~d~----~ar~~La~lL~~~G~~e~A~~~l~~a~~l~--P~~~--~~~~~l~~ll~a- 76 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKASPKDA----SLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYL--PGASQLRHLVKA- 76 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGH--HHHHHHHHHHHH-
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCcH--HHHHHHHHHHHh-
Confidence 3456888888888888888888876 888899999999999999999999999998 8774 477777776644
Q ss_pred hhhcccchhHHHHHHHHHHHh-hhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHH
Q psy8160 174 DTLGEKSHRETLAIHCLQKSI-EADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCS 240 (324)
Q Consensus 174 ~~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 240 (324)
.+..+++...+.... ...|.....+...+.++...|++++|...++++.+..|..+..|..
T Consensus 77 ------~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~~ 138 (264)
T d1zbpa1 77 ------AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAND 138 (264)
T ss_dssp ------HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEETT
T ss_pred ------ccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccccc
Confidence 224444444333322 2345566777888999999999999999999999999988766544
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.93 E-value=3.8e-09 Score=79.33 Aligned_cols=147 Identities=7% Similarity=-0.044 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc
Q psy8160 121 KLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS 200 (324)
Q Consensus 121 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 200 (324)
..+.+...|......|++++|++.|.+++.+. ++..... ...+ .+ .......+.+..
T Consensus 10 ~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~l~~--~~~~--------------~w-----~~~~r~~l~~~~ 66 (179)
T d2ff4a2 10 RFVAEKTAGVHAAAAGRFEQASRHLSAALREW--RGPVLDD--LRDF--------------QF-----VEPFATALVEDK 66 (179)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CSSTTGG--GTTS--------------TT-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccccccc--Ccch--------------HH-----HHHHHHHHHHHH
Confidence 34678888999999999999999999999998 5542210 0000 00 111222344556
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcC-CCCcch
Q psy8160 201 GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINN-IPTSNN 279 (324)
Q Consensus 201 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~-~~~~~~ 279 (324)
..++..++.++...|++++|+..+++++..+|.+..+|..++.++...|+ +.+|+..|.-... .+....| .+.. .
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr-~~eAl~~y~~~~~--~L~~eLG~~P~~-~ 142 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDR-QSDALGAYRRVKT--TLADDLGIDPGP-T 142 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTC-HHHHHHHHHHHHH--HHHHHHSCCCCH-H
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC-HHHHHHHHHHHHH--HHHHHhCCCcCH-H
Confidence 78899999999999999999999999999999999999999999999999 9999998722111 1122233 2332 1
Q ss_pred HHHHHHHhhhcCCCh
Q psy8160 280 NRQCYNSYSTSIASC 294 (324)
Q Consensus 280 A~~~~~~al~~~p~~ 294 (324)
-...+...+..+|..
T Consensus 143 l~~l~~~il~~~~~~ 157 (179)
T d2ff4a2 143 LRALNERILRQQPLD 157 (179)
T ss_dssp HHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHhCCCCc
Confidence 334455556666653
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.69 E-value=2.4e-07 Score=63.40 Aligned_cols=82 Identities=13% Similarity=0.069 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q psy8160 160 ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG-QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTW 238 (324)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 238 (324)
.++.++.||+...-.. ..+.++|+..++.++..+|.+. +.++.||..|...|+|++|..+++++++++|++..+.
T Consensus 35 ~qt~F~YAw~Lv~S~~----~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~ 110 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTD----VNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 110 (124)
T ss_dssp HHHHHHHHHHHHHSSC----HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cchHHHHHHHHHcCCc----HHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHH
Confidence 5588999999865221 3488999999999999998765 8999999999999999999999999999999999887
Q ss_pred HHhHHHH
Q psy8160 239 CSIGNKD 245 (324)
Q Consensus 239 ~~lg~~~ 245 (324)
...-.+.
T Consensus 111 ~L~~~Ie 117 (124)
T d2pqrb1 111 ALKSMVE 117 (124)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.68 E-value=2.1e-07 Score=69.50 Aligned_cols=93 Identities=10% Similarity=0.081 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCc----------------------hhhHHHHHHHHhcccHHHHHHHHH
Q psy8160 52 EVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPC----------------------TFTKLEGLMFKVNNEYDSALKHLT 108 (324)
Q Consensus 52 ~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~----------------------~~~~~la~~~~~~~~~~~A~~~~~ 108 (324)
+.+...|......|++++|...|.+++ +.+... .++..++.++...|++++|+..++
T Consensus 12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~ 91 (179)
T d2ff4a2 12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE 91 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence 456777888888888888888888888 655442 123335677777777777777777
Q ss_pred HHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q psy8160 109 LCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQL 148 (324)
Q Consensus 109 ~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 148 (324)
+++...|.+. .++..++.++...|++.+|+..|+++
T Consensus 92 ~al~~~P~~e----~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 92 ALTFEHPYRE----PLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHSTTCH----HHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHhCCccH----HHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 7777777665 67777777777777777777777766
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=98.52 E-value=1.4e-06 Score=61.54 Aligned_cols=115 Identities=12% Similarity=0.057 Sum_probs=62.7
Q ss_pred ccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhc
Q psy8160 98 NEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLG 177 (324)
Q Consensus 98 ~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 177 (324)
.|+++|+++|+++...... .+.+.++. ....++++|+..|+++.+.. + +.+++.+|.+|..-..
T Consensus 7 kd~~~A~~~~~kaa~~g~~------~a~~~l~~--~~~~~~~~a~~~~~~aa~~g----~--~~a~~~Lg~~y~~g~~-- 70 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELNEM------FGCLSLVS--NSQINKQKLFQYLSKACELN----S--GNGCRFLGDFYENGKY-- 70 (133)
T ss_dssp HHHHHHHHHHHHHHHTTCT------THHHHHHT--CTTSCHHHHHHHHHHHHHTT----C--HHHHHHHHHHHHHCSS--
T ss_pred cCHHHHHHHHHHHHHCCCh------hhhhhhcc--ccccCHHHHHHHHhhhhccc----c--hhhhhhHHHhhhhccc--
Confidence 3566666666666544311 34555543 23356666666666665543 2 3356666666643110
Q ss_pred ccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccC
Q psy8160 178 EKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAA----VGKVHDAFLAYRNSVEKS 231 (324)
Q Consensus 178 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~ 231 (324)
...++++|+.+|+++.+. .++.+.+.||.+|.. ..++.+|+.+|++|.+..
T Consensus 71 -~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 71 -VKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp -SCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred -cchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 022566666666666554 345666666666655 345666666666665544
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=98.45 E-value=3.4e-06 Score=59.48 Aligned_cols=113 Identities=12% Similarity=0.063 Sum_probs=50.2
Q ss_pred cHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH----hhcHHH
Q psy8160 66 EYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEV----QRKYKT 140 (324)
Q Consensus 66 ~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~----~~~~~~ 140 (324)
|+++|+++|+++. .. +..+...++. ....++++|++.++++..... +.+.+.+|.+|.. ..++++
T Consensus 8 d~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g~------~~a~~~Lg~~y~~g~~~~~d~~~ 77 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACELNS------GNGCRFLGDFYENGKYVKKDLRK 77 (133)
T ss_dssp HHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHCSSSCCCHHH
T ss_pred CHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcccc------hhhhhhHHHhhhhccccchhhHH
Confidence 4555555555555 22 2233333332 233455555555555543321 1445555555543 234555
Q ss_pred HHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhC
Q psy8160 141 AKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEAD 197 (324)
Q Consensus 141 A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 197 (324)
|+.+|+++.+.. . +.+.+.+|.+|..-. | ...+.++|+.+|+++.+..
T Consensus 78 A~~~~~~aa~~g--~----~~a~~~Lg~~y~~G~--g-v~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 78 AAQYYSKACGLN--D----QDGCLILGYKQYAGK--G-VVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHTT--C----HHHHHHHHHHHHHTS--S-SCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhhhhccC--c----chHHHHHHHHHHcCC--c-cCCCHHHHHHHHHHHHHCC
Confidence 555555555433 1 224555555553311 0 0124555555555554443
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.23 E-value=1.3e-05 Score=54.63 Aligned_cols=80 Identities=13% Similarity=0.008 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHh---hcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCC
Q psy8160 122 LEVRFHIAHLHEVQ---RKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADP 198 (324)
Q Consensus 122 ~~~~~~la~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 198 (324)
.++.|+.|+++... .+..+|+.+++.++..+ |.+ ..+.++.+|..|+. .|++++|..+++++++++|
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~--p~~-~rd~lY~Lav~yyk-------lgdy~~A~~~~~~~L~ieP 104 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESR-RRECLYYLTIGCYK-------LGEYSMAKRYVDTLFEHER 104 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGG-HHHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHCT
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC--chh-HHHHHHHHHHHHHH-------HhhHHHHHHHHHHHHccCC
Confidence 47899999998754 56789999999999877 654 24699999999987 5599999999999999999
Q ss_pred ccHHHHHHHHHHH
Q psy8160 199 KSGQSLYLLGRCF 211 (324)
Q Consensus 199 ~~~~~~~~lg~~~ 211 (324)
.+..+....-.+.
T Consensus 105 ~n~qA~~L~~~Ie 117 (124)
T d2pqrb1 105 NNKQVGALKSMVE 117 (124)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH
Confidence 9998877665553
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.11 E-value=0.16 Score=40.56 Aligned_cols=228 Identities=11% Similarity=0.014 Sum_probs=119.6
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Q psy8160 55 LRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEV 134 (324)
Q Consensus 55 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~ 134 (324)
-..|..+...|.|+.|...|.. ..-+..+..++...+++..|.....+.- . .++|..+......
T Consensus 18 ~~i~~~c~~~~lye~A~~lY~~-------~~d~~rl~~~~v~l~~~~~avd~~~k~~-----~----~~~~k~~~~~l~~ 81 (336)
T d1b89a_ 18 QQVGDRCYDEKMYDAAKLLYNN-------VSNFGRLASTLVHLGEYQAAVDGARKAN-----S----TRTWKEVCFACVD 81 (336)
T ss_dssp -----------CTTTHHHHHHH-------TTCHHHHHHHHHTTTCHHHHHHHHHHHT-----C----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHh-------CCCHHHHHHHHHhhccHHHHHHHHHHcC-----C----HHHHHHHHHHHHh
Confidence 4577788888889888888872 2333445667777788888777655441 1 2566666666655
Q ss_pred hhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHc
Q psy8160 135 QRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAV 214 (324)
Q Consensus 135 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 214 (324)
..+..-| +++... ....++-....-..|.. .+.+++.+.+++.++...+.+...+..++.+|.+-
T Consensus 82 ~~e~~la-----~i~~~~---~~~~~d~l~~~v~~ye~-------~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 82 GKEFRLA-----QMCGLH---IVVHADELEELINYYQD-------RGYFEELITMLEAALGLERAHMGMFTELAILYSKF 146 (336)
T ss_dssp TTCHHHH-----HHTTTT---TTTCHHHHHHHHHHHHH-------TTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred CcHHHHH-----HHHHHH---hhcCHHHHHHHHHHHHH-------cCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHh
Confidence 5544332 111111 11112233334444422 33788899999988888888888888888877665
Q ss_pred CCHHHHHHHHHHH-HccCCCC-------HHHHHHhHHHHhhcCCCHHHHHHHH-----HHH--HhhHHHHHHcCCCCcch
Q psy8160 215 GKVHDAFLAYRNS-VEKSEGN-------ADTWCSIGNKDFSNNSNREDYHQAL-----NKY--RDLGDFLVINNIPTSNN 279 (324)
Q Consensus 215 ~~~~~A~~~~~~a-l~~~p~~-------~~~~~~lg~~~~~~~~~~~~A~~~~-----~~~--~~lg~~~~~~~~~~~~~ 279 (324)
+ .++-.+.++.. -..++.. ...|-.+..+|.+.|+ +++|+... ++| ...-.++.+..+.+.
T Consensus 147 ~-~~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~-~~~A~~~~i~~~~~~~~~~~f~e~~~k~~N~e~-- 222 (336)
T d1b89a_ 147 K-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEE-YDNAIITMMNHPTDAWKEGQFKDIITKVANVEL-- 222 (336)
T ss_dssp C-HHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTC-HHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHH--
T ss_pred C-hHHHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCC-HHHHHHHHHHcchhhhhHHHHHHHHHccCChHH--
Confidence 4 45555555442 1112111 1234556677777888 88887776 222 223344566666666
Q ss_pred HHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHhh
Q psy8160 280 NRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYRD 321 (324)
Q Consensus 280 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 321 (324)
.-+...-.++..|.. +..-+..+ ..+-+..+.++.+++
T Consensus 223 ~~~~i~~yL~~~p~~--i~~lL~~v--~~~~d~~r~V~~~~k 260 (336)
T d1b89a_ 223 YYRAIQFYLEFKPLL--LNDLLMVL--SPRLDHTRAVNYFSK 260 (336)
T ss_dssp HHHHHHHHHHHCGGG--HHHHHHHH--GGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCHHH--HHHHHHHh--ccCCCHHHHHHHHHh
Confidence 555555556655542 22223222 233445555554443
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.09 E-value=0.31 Score=40.65 Aligned_cols=135 Identities=7% Similarity=-0.088 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH--
Q psy8160 182 RETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL-- 259 (324)
Q Consensus 182 ~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-- 259 (324)
..+.+...+..............-.++. ....+++..+...+...-......+...+.+|..+...|+ .++|...|
T Consensus 267 ~~~~a~~~~~~~~~~~~~~~~~~w~~~~-al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~-~~~A~~~~~~ 344 (450)
T d1qsaa1 267 VTDEQAKWRDDAIMRSQSTSLIERRVRM-ALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGR-EAEAKEILHQ 344 (450)
T ss_dssp CCHHHHHHHHHHHHTCCCHHHHHHHHHH-HHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred chHHHHHHHHhhcccccchHHHHHHHHH-HHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCC-hhhHHHHHHH
Confidence 4555666666655444333333333343 4556788888887766533333346666888888888998 88888777
Q ss_pred -------------------------------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchh
Q psy8160 260 -------------------------------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKD 302 (324)
Q Consensus 260 -------------------------------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 302 (324)
..-...+..+...|+... |...+..++..-+ +.-...+.
T Consensus 345 ~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~--A~~e~~~l~~~~~--~~~~~~la 420 (450)
T d1qsaa1 345 LMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNT--ARSEWANLVKSKS--KTEQAQLA 420 (450)
T ss_dssp HHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHH--HHHHHHHHHTTCC--HHHHHHHH
T ss_pred HhcCCChHHHHHHHHcCCCCCCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchH--HHHHHHHHHhCCC--HHHHHHHH
Confidence 112334556677788888 8888887775432 22222233
Q ss_pred hhccCChhhHHHHHHHHhhcC
Q psy8160 303 FSNNSNREDYHQALNKYRDLG 323 (324)
Q Consensus 303 ~~~~~~~~~~~~a~~~~~~~~ 323 (324)
.+. .+.|.++.|+......|
T Consensus 421 ~lA-~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 421 RYA-FNNQWWDLSVQATIAGK 440 (450)
T ss_dssp HHH-HHTTCHHHHHHHHHHTT
T ss_pred HHH-HHCCChhHHHHHHHHHH
Confidence 222 34577888777665543
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.08 E-value=0.31 Score=40.61 Aligned_cols=103 Identities=9% Similarity=-0.055 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---------------------------
Q psy8160 182 RETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN--------------------------- 234 (324)
Q Consensus 182 ~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--------------------------- 234 (324)
++..+...+...-......+...|-+|..+...|+.++|...|..+-.. ++.
T Consensus 300 ~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~-~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~ 378 (450)
T d1qsaa1 300 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ-RGFYPMVAAQRIGEEYELKIDKAPQNVDSA 378 (450)
T ss_dssp CHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-CSHHHHHHHHHTTCCCCCCCCCCCSCCCCH
T ss_pred ChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC-CChHHHHHHHHcCCCCCCCcCCCCccHHHh
Confidence 6777777777654333344677899999999999999999999988642 211
Q ss_pred --HHHHHHhHHHHhhcCCCHHHHHHHH---------HHHHhhHHHHHHcCCCCcchHHHHHHHhh
Q psy8160 235 --ADTWCSIGNKDFSNNSNREDYHQAL---------NKYRDLGDFLVINNIPTSNNNRQCYNSYS 288 (324)
Q Consensus 235 --~~~~~~lg~~~~~~~~~~~~A~~~~---------~~~~~lg~~~~~~~~~~~~~A~~~~~~al 288 (324)
...-+..+..+...|+ ...|...+ .-...++.+..+.|.++. ||....++-
T Consensus 379 ~~~~~~~~ra~~L~~~g~-~~~A~~e~~~l~~~~~~~~~~~la~lA~~~g~~~~--aI~a~~~~~ 440 (450)
T d1qsaa1 379 LTQGPEMARVRELMYWNL-DNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDL--SVQATIAGK 440 (450)
T ss_dssp HHHSHHHHHHHHHHHTTC-HHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHH--HHHHHHHTT
T ss_pred hhcChHHHHHHHHHHcCC-chHHHHHHHHHHhCCCHHHHHHHHHHHHHCCChhH--HHHHHHHHH
Confidence 1112345677888999 99998876 556678899999999999 998877763
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.98 E-value=0.62 Score=37.03 Aligned_cols=146 Identities=11% Similarity=0.015 Sum_probs=87.3
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Q psy8160 55 LRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEV 134 (324)
Q Consensus 55 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~ 134 (324)
-++..++.+.++++.|...++++ +....+......+.......-+.. +... ....++-...+-..+..
T Consensus 44 ~rl~~~~v~l~~~~~avd~~~k~----~~~~~~k~~~~~l~~~~e~~la~i-----~~~~---~~~~~d~l~~~v~~ye~ 111 (336)
T d1b89a_ 44 GRLASTLVHLGEYQAAVDGARKA----NSTRTWKEVCFACVDGKEFRLAQM-----CGLH---IVVHADELEELINYYQD 111 (336)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH----TCHHHHHHHHHHHHHTTCHHHHHH-----TTTT---TTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccHHHHHHHHHHc----CCHHHHHHHHHHHHhCcHHHHHHH-----HHHH---hhcCHHHHHHHHHHHHH
Confidence 45666777888888887777654 233445555555555444443321 1110 11112334456677888
Q ss_pred hhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHH-hhhCCccH-------HHHHH
Q psy8160 135 QRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKS-IEADPKSG-------QSLYL 206 (324)
Q Consensus 135 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a-l~~~~~~~-------~~~~~ 206 (324)
.|.+++.+..++..+... +.+ ...+..++.+|... +.++-.++++.. ...++... ..|-.
T Consensus 112 ~~~~e~Li~~Le~~~~~~--~~~--~~~~~~L~~lyak~--------~~~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~e 179 (336)
T d1b89a_ 112 RGYFEELITMLEAALGLE--RAH--MGMFTELAILYSKF--------KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAE 179 (336)
T ss_dssp TTCHHHHHHHHHHHTTST--TCC--HHHHHHHHHHHHTT--------CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHH
T ss_pred cCChHHHHHHHHHHHcCC--ccc--hHHHHHHHHHHHHh--------ChHHHHHHHHhccccCCHHHHHHHHHHcCChHH
Confidence 899999999999988766 555 34777888877552 455555666553 22222211 23456
Q ss_pred HHHHHHHcCCHHHHHHHH
Q psy8160 207 LGRCFAAVGKVHDAFLAY 224 (324)
Q Consensus 207 lg~~~~~~~~~~~A~~~~ 224 (324)
+..+|...|++++|+...
T Consensus 180 lv~Ly~~~~~~~~A~~~~ 197 (336)
T d1b89a_ 180 LVFLYDKYEEYDNAIITM 197 (336)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHH
Confidence 677777888888887765
|