Psyllid ID: psy8182

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------
MAGVLEFVIPSSKDELLEKQATTQYYVQAELTLEEFNERIKDCFEALDNDGPMFILENFDTLYSMLTHFKSIEYKILHNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEKYLNVVKMTLWVFTEFIINFETRLQKDYHKIVIDAKARKVKVRAAIKHNEKMQWDWDFHLSNGLNSIHQILKSKINKLWDPPVVEEEFVNMVANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYNHGISCTVKIVQLLKNCEHLVSPLAQAVVMFIRNHGCKSLVREIVREISAMEDGNENAGQDSSKMIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRLMDKSSNVVKYTVQLLKTMIESNPFAAKATTQYYVQAELTLEEFNERIKDCFEALDNDGPMFILENFDTLYSMLTHFKSIEYKILHNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEKYLNVVKMTLWVFTEFIINFETRLQKDYHKIVIDAKARKVKVRAAIKHNEKMQWDWDFHLSNGLNSIHQILKSKINKLWDPPVVEEEFVNMVANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYNHGISCTVKIVQLLKNCEHLVSPLAQAVVMFIRNHGCKSLVREIVREISAMEDGNENAGQDSSKMIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVSTEKKLECWQPNW
ccccEEEEcccccHHHHHcccccccEEcccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccc
ccccEEEEEcccHHHHHcccccccEEEEEEccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccHHHHccccccHHHHHHHHHHHHHHHHccccHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccHHHHccccccHHHHHHHHHHHHHHHHcccccHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccHcccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccc
MAGVLEFVIPSSKDELLEKQATTQYYVQAELTLEEFNERIKDCFEAldndgpmfilENFDTLYSMLTHFKSIEYKILHNVYTKLLLRSLKEFSSILDnflsgdsldEELQEKYLNVVKMTLWVFTEFIINFETRLQKDYHKIVIDAKARKVKVRAAIKHNEKMQWdwdfhlsnglNSIHQILKSKinklwdppvveEEFVNMVANCCYKiiedpciasvkhkELRVFIFQIVGYLIKRYNHGISCTVKIVQLLKNCEHLVSPLAQAVVMFIRNHGCKSLVREIVREISAmedgnenagqdsSKMIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLINVykredlsdeAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRLMDKSSNVVKYTVQLLKTMIESNPFAAKATTQYYVQAELTLEEFNERIKDCFEAldndgpmfilENFDTLYSMLTHFKSIEYKILHNVYTKLLLRSLKEFSSILDnflsgdsldEELQEKYLNVVKMTLWVFTEFIINFETRLQKDYHKIVIDAKARKVKVRAAIKHNEKMQWdwdfhlsnglNSIHQILKSKinklwdppvveEEFVNMVANCCYKiiedpciasvkhkELRVFIFQIVGYLIKRYNHGISCTVKIVQLLKNCEHLVSPLAQAVVMFIRNHGCKSLVREIVREISAmedgnenagqdsSKMIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLINVykredlsdeAKEQRDEYLNVLLDHMHDVHTFVRTKVSTEKKLECWQPNW
magvlefvipsskdellekQATTQYYVQAELTLEEFNERIKDCFEALDNDGPMFILENFDTLYSMLTHFKSIEYKILHNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEKYLNVVKMTLWVFTEFIINFETRLQKDYHKIVIDAKARKVKVRAAIKHNEKMQWDWDFHLSNGLNSIHQILKSKINKLWDPPVVEEEFVNMVANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYNHGISCTVKIVQLLKNCEHLVSPLAQAVVMFIRNHGCKSLVREIVREISAMEDGNENAGQDSSKMIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAigrlmdkssnVVKYTVQLLKTMIESNPFAAKATTQYYVQAELTLEEFNERIKDCFEALDNDGPMFILENFDTLYSMLTHFKSIEYKILHNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEKYLNVVKMTLWVFTEFIINFETRLQKDYHKIVIDAKARKVKVRAAIKHNEKMQWDWDFHLSNGLNSIHQILKSKINKLWDPPVVEEEFVNMVANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYNHGISCTVKIVQLLKNCEHLVSPLAQAVVMFIRNHGCKSLVREIVREISAMEDGNENAGQDSSKMIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRtkvstekklecwqpnw
MAGVLEFVIPSSKDELLEKQATTQYYVQAELTLEEFNERIKDCFEALDNDGPMFILENFDTLYSMLTHFKSIEYKILHNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEKYLNVVKMTLWVFTEFIINFETRLQKDYHkividakarkvkvraaikHNEKMQWDWDFHLSNGLNSIHQILKSKINKLWDPPVVEEEFVNMVANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYNHGISCTVKIVQLLKNCEHLVSPLAQAVVMFIRNHGCKSLVREIVREISAMEDGNENAGQDSSKMIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRLMDKSSNVVKYTVQLLKTMIESNPFAAKATTQYYVQAELTLEEFNERIKDCFEALDNDGPMFILENFDTLYSMLTHFKSIEYKILHNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEKYLNVVKMTLWVFTEFIINFETRLQKDYHkividakarkvkvraaikHNEKMQWDWDFHLSNGLNSIHQILKSKINKLWDPPVVEEEFVNMVANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYNHGISCTVKIVQLLKNCEHLVSPLAQAVVMFIRNHGCKSLVREIVREISAMEDGNENAGQDSSKMIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVSTEKKLECWQPNW
******FVI******LLEKQATTQYYVQAELTLEEFNERIKDCFEALDNDGPMFILENFDTLYSMLTHFKSIEYKILHNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEKYLNVVKMTLWVFTEFIINFETRLQKDYHKIVIDAKARKVKVRAAIKHNEKMQWDWDFHLSNGLNSIHQILKSKINKLWDPPVVEEEFVNMVANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYNHGISCTVKIVQLLKNCEHLVSPLAQAVVMFIRNHGCKSLVREIVREI****************MIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLINVYKREDL********DEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRLMDKSSNVVKYTVQLLKTMIESNPFAAKATTQYYVQAELTLEEFNERIKDCFEALDNDGPMFILENFDTLYSMLTHFKSIEYKILHNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEKYLNVVKMTLWVFTEFIINFETRLQKDYHKIVIDAKARKVKVRAAIKHNEKMQWDWDFHLSNGLNSIHQILKSKINKLWDPPVVEEEFVNMVANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYNHGISCTVKIVQLLKNCEHLVSPLAQAVVMFIRNHGCKSLVREIVREI****************MIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLINVYKRED*********DEYLNVLLDHMHDVHTFVRTKVSTEKKLECW****
*AGVLEFVIPSSKDELLEKQATTQYYVQAELTLEEFNERIKDCFEALDNDGPMFILENFDTLYSMLTHFKSIEYKILHNVYTKLLLRSLKEFSS******************YLNVVKMTLWVFTEFIINFE*********************************DWDFHLSNGLNSIHQILKSKINKLWDPPVVEEEFVNMVANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYNHGISCTVKIVQLLKNCEHLVSPLAQAVVMFIRNHGCKSLVREIVREISA**************MIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLIN****************EYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRLMDKSSNVVKYTVQLLKTMIESNPFAAKATTQYYVQAELTLEE******************FILENFDTLYSMLTHFKSIEYKILHNVYTKLLLRS************************YLNVVKMTLWVFTEFIINF*********************************WDWDFHLSNGLNSIHQILKSKINKLWDPPVVEEEFVNMVANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYNHGISCTVKIVQLLKNCEHLVSPLAQAVVMFIRNHGCKSLVREIVREISA*************KMIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLI*****************EYLNVLLDHMHDVHTFVRTKVSTEKKLECWQPN*
MAGVLEFVIPSSKDELLEKQATTQYYVQAELTLEEFNERIKDCFEALDNDGPMFILENFDTLYSMLTHFKSIEYKILHNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEKYLNVVKMTLWVFTEFIINFETRLQKDYHKIVIDAKARKVKVRAAIKHNEKMQWDWDFHLSNGLNSIHQILKSKINKLWDPPVVEEEFVNMVANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYNHGISCTVKIVQLLKNCEHLVSPLAQAVVMFIRNHGCKSLVREIVREISAMEDGNENAGQDSSKMIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRLMDKSSNVVKYTVQLLKTMIESNPFAAKATTQYYVQAELTLEEFNERIKDCFEALDNDGPMFILENFDTLYSMLTHFKSIEYKILHNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEKYLNVVKMTLWVFTEFIINFETRLQKDYHKIVIDAKARKVKVRAAIKHNEKMQWDWDFHLSNGLNSIHQILKSKINKLWDPPVVEEEFVNMVANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYNHGISCTVKIVQLLKNCEHLVSPLAQAVVMFIRNHGCKSLVREIVREISAMEDGNENAGQDSSKMIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTK**************
*AGVLEFVIPSSKDELLEKQATTQYYVQAELTLEEFNERIKDCFEALDNDGPMFILENFDTLYSMLTHFKSIEYKILHNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEKYLNVVKMTLWVFTEFIINFETRLQK*************************MQWDWDFHLSNGLNSIHQILKSKINKLWDPPVVEEEFVNMVANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYNHGISCTVKIVQLLKNCEHLVSPLAQAVVMFIRNHGCKSLVREIVREISAMEDGNENAGQDSSKMIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRLMDKSSNVVKYTVQLLKTMIESNPFAAKATTQYYVQAELTLEEFNERIKDCFEALDNDGPMFILENFDTLYSMLTHFKSIEYKILHNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEKYLNVVKMTLWVFTEFIINFETRLQKD*************************QWDWDFHLSNGLNSIHQILKSKINKLWDPPVVEEEFVNMVANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYNHGISCTVKIVQLLKNCEHLVSPLAQAVVMFIRNHGCKSLVREIVREISAMEDGNENAGQDSSKMIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVSTEKKLECWQPNW
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAGVLEFVIPSSKDELLEKQATTQYYVQAELTLEEFNERIKDCFEALDNDGPMFILENFDTLYSMLTHFKSIEYKILHNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEKYLNVVKMTLWVFTEFIINFETRLQKDYHKIVIDAKARKVKVRAAIKHNEKMQWDWDFHLSNGLNSIHQILKSKINKLWDPPVVEEEFVNMVANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYNHGISCTVKIVQLLKNCEHLVSPLAQAVVMFIRNHGCKSLVREIVREISAMEDGNENAGQDSSKMIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRLMDKSSNVVKYTVQLLKTMIESNPFAAKATTQYYVQAELTLEEFNERIKDCFEALDNDGPMFILENFDTLYSMLTHFKSIEYKILHNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEKYLNVVKMTLWVFTEFIINFETRLQKDYHKIVIDAKARKVKVRAAIKHNEKMQWDWDFHLSNGLNSIHQILKSKINKLWDPPVVEEEFVNMVANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYNHGISCTVKIVQLLKNCEHLVSPLAQAVVMFIRNHGCKSLVREIVREISAMEDGNENAGQDSSKMIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVSTEKKLECWQPNW
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query827 2.2.26 [Sep-21-2011]
Q8K2Z4 1392 Condensin complex subunit yes N/A 0.515 0.306 0.359 1e-70
Q15021 1401 Condensin complex subunit yes N/A 0.518 0.306 0.352 1e-69
Q9YHY6 1364 Condensin complex subunit N/A N/A 0.568 0.344 0.320 3e-68
O94679 1158 Condensin complex subunit yes N/A 0.442 0.316 0.213 5e-18
>sp|Q8K2Z4|CND1_MOUSE Condensin complex subunit 1 OS=Mus musculus GN=Ncapd2 PE=1 SV=2 Back     alignment and function desciption
 Score =  268 bits (686), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 161/448 (35%), Positives = 259/448 (57%), Gaps = 22/448 (4%)

Query: 6   EFVIPSSKDELLEKQATTQYYVQAELTLEEFNERIKDCFEALDNDGPMFILENFDTLYSM 65
           EF +P S +ELL+     QY V+  L ++  + +++    A    GP+ ILE+FDT+YS+
Sbjct: 7   EFHLPLSPEELLKSGGVNQYVVREVLPVKHLSSQLRAFQSAFRAQGPLAILEHFDTVYSI 66

Query: 66  LTHFKSIEYKILHNVY---TKLLLRSLKEFSSILDNF-LSGDSLDEELQEKYLNVVKMTL 121
           L HF+SIE  +  +      K++ R  +E SSILD+  LSG       +  +LN +KM  
Sbjct: 67  LHHFRSIEPGLKEDTLEFLKKVVSRHSQELSSILDDAALSGSD-----RSAHLNALKMNC 121

Query: 122 WVFTEFIINFETRL-QKDYHKIVIDAKARKVKVRAAIKHNEKMQWDWDFHLSNGLNSIHQ 180
           +     + +FE    Q     + I  K ++ + +A +       +DW+      L  + Q
Sbjct: 122 YALIRLLESFENMTSQTSLIDLDIGGKGKRARAKATLG------FDWEEERQPVLQLLTQ 175

Query: 181 ILKSKINKLWDPPVVEEEFVNMVANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYN 240
           +L+  I  LW+   +EEEFV++V  CCY+++E+P I+  K++  +  I  ++G  + RYN
Sbjct: 176 LLQLDIRHLWNHSAIEEEFVSLVTGCCYRLLENPTISHQKNRSTKEAIAHLLGVALVRYN 235

Query: 241 HGISCTVKIVQLLKNCEHLVSPLAQAVVMFIRNHGCKSLVREIVREIS---AMEDGNENA 297
           H +S TVKI+Q+L++ EHL   L  AV ++  ++G KS+V EIVREI      E   + A
Sbjct: 236 HMLSATVKIIQMLQHFEHLPPVLVTAVSLWATDYGMKSIVGEIVREIGQKCPQELSRDTA 295

Query: 298 GQDSSKMIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLINVYKRE 357
           G   +K  AAFL E+A      ++  M  LL +L+ E+Y+MRN  L  + E+++ V   +
Sbjct: 296 G---AKGFAAFLTELAERIPAVLMANMCILLDHLDGENYMMRNAVLAAIAEMVLQVLNGD 352

Query: 358 DLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAIGR 417
            L + A+E RD++L++L  H HDV++FVR++VLQLF R+V  KA+P+     ++  A+GR
Sbjct: 353 QLEESARETRDQFLDILQAHGHDVNSFVRSRVLQLFARIVQQKALPLTRFQAVVALAVGR 412

Query: 418 LMDKSSNVVKYTVQLLKTMIESNPFAAK 445
           L DKS  V K  +QLL + + +NPF+ K
Sbjct: 413 LADKSVLVCKNAIQLLASFLANNPFSCK 440
Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases. May target the condensin complex to DNA via its C-terminal domain.
Mus musculus (taxid: 10090)
>sp|Q15021|CND1_HUMAN Condensin complex subunit 1 OS=Homo sapiens GN=NCAPD2 PE=1 SV=3 Back     alignment and function description
>sp|Q9YHY6|CND1_XENLA Condensin complex subunit 1 OS=Xenopus laevis GN=ncapd2 PE=1 SV=1 Back     alignment and function description
>sp|O94679|CND1_SCHPO Condensin complex subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cnd1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query827
260841461 1451 hypothetical protein BRAFLDRAFT_283981 [ 0.522 0.297 0.375 2e-82
156365935 1367 predicted protein [Nematostella vectensi 0.522 0.316 0.35 1e-77
328716872 1385 PREDICTED: condensin complex subunit 1-l 0.533 0.318 0.354 1e-75
390348880868 PREDICTED: condensin complex subunit 1-l 0.555 0.528 0.354 2e-75
321473434 1418 hypothetical protein DAPPUDRAFT_222916 [ 0.518 0.302 0.349 5e-73
405972811 2824 Condensin complex subunit 1 [Crassostrea 0.523 0.153 0.362 2e-72
242010315 1413 Condensin complex subunit, putative [Ped 0.524 0.307 0.382 4e-72
340719964 1418 PREDICTED: condensin complex subunit 1-l 0.509 0.296 0.361 2e-70
449666086 1420 PREDICTED: condensin complex subunit 1-l 0.546 0.318 0.342 5e-70
443717209 1478 hypothetical protein CAPTEDRAFT_227704 [ 0.534 0.299 0.358 7e-70
>gi|260841461|ref|XP_002613934.1| hypothetical protein BRAFLDRAFT_283981 [Branchiostoma floridae] gi|229299324|gb|EEN69943.1| hypothetical protein BRAFLDRAFT_283981 [Branchiostoma floridae] Back     alignment and taxonomy information
 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 166/442 (37%), Positives = 267/442 (60%), Gaps = 10/442 (2%)

Query: 5   LEFVIPSSKDELLEKQATTQYYVQAELTLEEFNERIKDCFEALDNDGPMFILENFDTLYS 64
            EF +P ++ +LL++   TQY V+  LT+ + N +I    +A    GP  ILENFD +YS
Sbjct: 3   FEFAVPLTRKDLLKRTTDTQYVVEEVLTIRQINTQIHG-LKAAFRSGPAAILENFDLIYS 61

Query: 65  MLTHFKSIEYKILHNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEKYLNVVKMTLWVF 124
           +L+    +E  +   V+  LL++++ + ++ L   L     D   + ++LN +KM+ ++ 
Sbjct: 62  VLSQLNEVESDVKEEVWN-LLVKAVSQHAAQLPALLDTADFDCSTRLQHLNTLKMSAYLL 120

Query: 125 TEFIINFETR-LQKDYHKIVIDAKARKVKVRAAIKHNEKMQWDWDFHLSNGLNSIHQILK 183
           T+F+  FE    +     +    + RK K     K   K  WDW+      + S+ Q+++
Sbjct: 121 TQFMEAFEAEDTKPTTVTVTKVCEGRKSK-----KKTSKGDWDWEGERLRAVQSLSQVVQ 175

Query: 184 SKINKLWDPPVVEEEFVNMVANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYNHGI 243
            +I +LW+PPVVEEEFVNMVANCCYK++E+P  ++ K K  +  +F ++G L++RYNHG+
Sbjct: 176 LEIGRLWEPPVVEEEFVNMVANCCYKLLENP--STCKEKGSKEAVFHLLGTLVRRYNHGL 233

Query: 244 SCTVKIVQLLKNCEHLVSPLAQAVVMFIRNHGCKSLVREIVREISAMEDGNENAGQDSSK 303
             ++KI+QLL++ EHL SP+AQ V MF +  G KS++ +I+REI  M+          ++
Sbjct: 234 GASLKIIQLLQHFEHLASPMAQMVQMFSQQFGAKSVISDIMREIGRMDPSKLVRDNSGTR 293

Query: 304 MIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEA 363
             AAF+ E+A      ++P +  +L +L+ ESY MRN  L +++E++I    + DL  + 
Sbjct: 294 SYAAFMVELAERVPALMLPNISVILCHLDGESYTMRNGVLGVMSEIVIRELSKGDLDAKG 353

Query: 364 KEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRLMDKSS 423
           K  RD++L+ L +H+HDV+ FVR+KVL L+  +  +KAIP+    +LL   +GRL DKSS
Sbjct: 354 KNARDQFLDCLEEHIHDVNAFVRSKVLTLWLHICNEKAIPLGRWHQLLCLVVGRLQDKSS 413

Query: 424 NVVKYTVQLLKTMIESNPFAAK 445
            V K  +QLL T + SNPF AK
Sbjct: 414 LVRKVAIQLLTTFLTSNPFGAK 435

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Order:

Class:

Phylum: Chordata

Superkingdom: Eukaryota
>gi|156365935|ref|XP_001626897.1| predicted protein [Nematostella vectensis] gi|156213790|gb|EDO34797.1| predicted protein [Nematostella vectensis] Back     alignment and taxonomy information
>gi|328716872|ref|XP_001950252.2| PREDICTED: condensin complex subunit 1-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|390348880|ref|XP_001199144.2| PREDICTED: condensin complex subunit 1-like [Strongylocentrotus purpuratus] Back     alignment and taxonomy information
>gi|321473434|gb|EFX84401.1| hypothetical protein DAPPUDRAFT_222916 [Daphnia pulex] Back     alignment and taxonomy information
>gi|405972811|gb|EKC37559.1| Condensin complex subunit 1 [Crassostrea gigas] Back     alignment and taxonomy information
>gi|242010315|ref|XP_002425914.1| Condensin complex subunit, putative [Pediculus humanus corporis] gi|212509890|gb|EEB13176.1| Condensin complex subunit, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|340719964|ref|XP_003398414.1| PREDICTED: condensin complex subunit 1-like isoform 1 [Bombus terrestris] Back     alignment and taxonomy information
>gi|449666086|ref|XP_002163259.2| PREDICTED: condensin complex subunit 1-like [Hydra magnipapillata] Back     alignment and taxonomy information
>gi|443717209|gb|ELU08403.1| hypothetical protein CAPTEDRAFT_227704 [Capitella teleta] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query827
UNIPROTKB|Q15021 1401 NCAPD2 "Condensin complex subu 0.524 0.309 0.336 1.5e-67
MGI|MGI:1915548 1392 Ncapd2 "non-SMC condensin I co 0.516 0.306 0.351 1.1e-66
ZFIN|ZDB-GENE-050506-59 1414 ncapd2 "non-SMC condensin I co 0.567 0.331 0.322 1.1e-66
UNIPROTKB|F1N3G4 1397 NCAPD2 "Uncharacterized protei 0.527 0.312 0.341 3e-66
RGD|1562596 1390 Ncapd2 "non-SMC condensin I co 0.516 0.307 0.348 4.8e-66
UNIPROTKB|E2RHZ0 1400 NCAPD2 "Uncharacterized protei 0.523 0.309 0.336 2e-64
UNIPROTKB|F1NEH3 1393 NCAPD2 "Condensin complex subu 0.556 0.330 0.295 1.9e-55
UNIPROTKB|F1NH88 1386 NCAPD2 "Condensin complex subu 0.556 0.331 0.295 2.7e-54
UNIPROTKB|F5GZJ1 1356 NCAPD2 "Condensin complex subu 0.425 0.259 0.344 5.6e-50
FB|FBgn0039680 1380 CAP-D2 "CAP-D2 condensin subun 0.585 0.350 0.278 9.3e-49
UNIPROTKB|Q15021 NCAPD2 "Condensin complex subunit 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
 Score = 662 (238.1 bits), Expect = 1.5e-67, Sum P(3) = 1.5e-67
 Identities = 148/440 (33%), Positives = 244/440 (55%)

Query:     6 EFVIPSSKDELLEKQATTQYYVQAELTLEEFNERIKDCFEALDNDGPMFILENFDTLYSM 65
             EF +P S +ELL+     QY VQ  L+++    +++    A    GP+ +L++FDT+YS+
Sbjct:     7 EFHLPLSPEELLKSGGVNQYVVQEVLSIKHLPPQLRAFQAAFRAQGPLAMLQHFDTIYSI 66

Query:    66 LTHFKSIEYKILHNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEKYLNVVKMTLWVFT 125
             L HF+SI+  +  +   + L++ +   S  L   L   +L    +  +LN +KM  +   
Sbjct:    67 LHHFRSIDPGLKEDTL-QFLIKVVSRHSQELPAILDDTTLSGSDRNAHLNALKMNCYALI 125

Query:   126 EFIINFETRLQKDYHXXXXXXXXXXXXXXXXXXHNEKMQWDWDFHLSNGLNSIHQILKSK 185
               + +FET +    +                  H     +DW+      L  + Q+L+  
Sbjct:   126 RLLESFET-MASQTNLVDLDLGGKGKKARTKAAHG----FDWEEERQPILQLLTQLLQLD 180

Query:   186 INKLWDPPVVEEEFVNMVANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYNHGISC 245
             I  LW+  ++EEEFV++V  CCY+++E+P I   K++  R  I  ++G  + RYNH +S 
Sbjct:   181 IRHLWNHSIIEEEFVSLVTGCCYRLLENPTINHQKNRPTREAITHLLGVALTRYNHMLSA 240

Query:   246 TVKIVQLLKNCEHLVSPLAQAVVMFIRNHGCKSLVREIVREISAMEDGNENAGQDSSKMI 305
             TVKI+Q+L++ EHL   L  AV ++  ++G KS+V EIVREI        +     +K  
Sbjct:   241 TVKIIQMLQHFEHLAPVLVAAVSLWATDYGMKSIVGEIVREIGQKCPQELSRDPSGTKGF 300

Query:   306 AAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKE 365
             AAFL E+A      ++ +M  LL +L+ E+Y+MRN  L  + E+++ V   + L   A++
Sbjct:   301 AAFLTELAERVPAILMSSMCILLDHLDGENYMMRNAVLAAMAEMVLQVLSGDQLEAAARD 360

Query:   366 QRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRLMDKSSNV 425
              RD++L+ L  H HDV++FVR++VLQLF R+V  KA+P+     ++  A+GRL DKS  V
Sbjct:   361 TRDQFLDTLQAHGHDVNSFVRSRVLQLFTRIVQQKALPLTRFQAVVALAVGRLADKSVLV 420

Query:   426 VKYTVQLLKTMIESNPFAAK 445
              K  +QLL + + +NPF+ K
Sbjct:   421 CKNAIQLLASFLANNPFSCK 440
GO:0051301 "cell division" evidence=IEA
GO:0045120 "pronucleus" evidence=IEA
GO:0007076 "mitotic chromosome condensation" evidence=IDA;NAS
GO:0000797 "condensin core heterodimer" evidence=NAS
GO:0005737 "cytoplasm" evidence=IDA;NAS
GO:0005634 "nucleus" evidence=IDA;NAS
GO:0042393 "histone binding" evidence=IDA;NAS
GO:0000228 "nuclear chromosome" evidence=IDA
GO:0000796 "condensin complex" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0000793 "condensed chromosome" evidence=IDA
GO:0005730 "nucleolus" evidence=IDA
MGI|MGI:1915548 Ncapd2 "non-SMC condensin I complex, subunit D2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050506-59 ncapd2 "non-SMC condensin I complex, subunit D2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1N3G4 NCAPD2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1562596 Ncapd2 "non-SMC condensin I complex, subunit D2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2RHZ0 NCAPD2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1NEH3 NCAPD2 "Condensin complex subunit 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NH88 NCAPD2 "Condensin complex subunit 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F5GZJ1 NCAPD2 "Condensin complex subunit 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
FB|FBgn0039680 CAP-D2 "CAP-D2 condensin subunit" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query827
pfam12922169 pfam12922, Cnd1_N, non-SMC mitotic condensation co 7e-22
pfam12922169 pfam12922, Cnd1_N, non-SMC mitotic condensation co 7e-22
COG5098 1128 COG5098, COG5098, Chromosome condensation complex 2e-18
COG5098 1128 COG5098, COG5098, Chromosome condensation complex 2e-10
>gnl|CDD|221856 pfam12922, Cnd1_N, non-SMC mitotic condensation complex subunit 1, N-term Back     alignment and domain information 
 Score = 93.1 bits (232), Expect = 7e-22
 Identities = 30/170 (17%), Positives = 70/170 (41%), Gaps = 6/170 (3%)

Query: 73  EYKILHNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEKYLNVVKMTLWVFTEFIINFE 132
              +   +   LL  SL   ++ +   L      + +   + N ++M  ++    +   E
Sbjct: 2   SSSVKSKL-LDLLSSSLSVLAASITALLEAGDDQDSIS-SHKNALEMYGYLLQWLLEALE 59

Query: 133 TRLQKDYHKIVIDAKARKVKVRAAIKHNEKMQWDWDFHLSNGLNSIHQILKSKINKLWDP 192
              +K        A   K K + A K      W W+      L  I ++L+  +++L+  
Sbjct: 60  KA-EKSAAAAPARAGKGKKKRKKAKKAVVA-SWKWEAQRERALELIAKVLQLDLSRLFGT 117

Query: 193 PVVEEEFVNMVANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYNHG 242
               + F+++     Y ++E+   A +K+K ++  IF+++G  +K++   
Sbjct: 118 TPERDTFISLFTRPIYLLLENE--ARLKNKSIKDAIFKVLGIAVKKHGQA 165

The three non-SMC (structural maintenance of chromosomes) subunits of the mitotic condensation complex are Cnd1-3. The whole complex is essential for viability and the condensing of chromosomes in mitosis. This is the conserved N-terminus of the subunit 1. Length = 169
>gnl|CDD|221856 pfam12922, Cnd1_N, non-SMC mitotic condensation complex subunit 1, N-term Back     alignment and domain information
>gnl|CDD|227429 COG5098, COG5098, Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|227429 COG5098, COG5098, Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 827
KOG0414|consensus 1251 100.0
KOG0414|consensus 1251 100.0
COG5098 1128 Chromosome condensation complex Condensin, subunit 100.0
COG5098 1128 Chromosome condensation complex Condensin, subunit 100.0
PF12922171 Cnd1_N: non-SMC mitotic condensation complex subun 100.0
PF12922171 Cnd1_N: non-SMC mitotic condensation complex subun 100.0
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 98.86
PTZ00429 746 beta-adaptin; Provisional 98.71
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 98.02
PTZ00429 746 beta-adaptin; Provisional 97.63
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 97.31
KOG1020|consensus 1692 97.22
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 96.87
KOG1020|consensus 1692 96.76
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 96.42
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 96.01
COG5096 757 Vesicle coat complex, various subunits [Intracellu 95.87
KOG1060|consensus 968 95.63
KOG1525|consensus 1266 95.53
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 95.41
COG5096 757 Vesicle coat complex, various subunits [Intracellu 95.26
KOG1241|consensus859 95.13
COG5218 885 YCG1 Chromosome condensation complex Condensin, su 95.13
KOG1248|consensus1176 94.08
KOG1061|consensus 734 93.7
PF13001501 Ecm29: Proteasome stabiliser; InterPro: IPR024372 93.56
PF1036392 DUF2435: Protein of unknown function (DUF2435) 93.53
PF1276542 Cohesin_HEAT: HEAT repeat associated with sister c 93.23
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 93.05
KOG2025|consensus 892 92.75
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 92.23
PRK09687280 putative lyase; Provisional 92.08
KOG1824|consensus1233 92.06
KOG0946|consensus 970 92.06
KOG2171|consensus 1075 91.63
PF14500262 MMS19_N: Dos2-interacting transcription regulator 91.61
cd03572122 ENTH_epsin_related ENTH domain, Epsin Related fami 91.38
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 90.84
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 90.83
KOG1248|consensus1176 90.31
PF08506370 Cse1: Cse1; InterPro: IPR013713 The exchange of ma 90.04
PRK09687280 putative lyase; Provisional 89.74
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 89.71
KOG2160|consensus342 89.48
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 89.47
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 89.14
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 88.31
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 87.38
KOG2171|consensus 1075 86.5
COG5240898 SEC21 Vesicle coat complex COPI, gamma subunit [In 85.97
KOG0211|consensus759 85.77
KOG1949|consensus 1005 85.49
KOG2259|consensus823 85.41
KOG1060|consensus 968 85.35
COG5218 885 YCG1 Chromosome condensation complex Condensin, su 84.03
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 83.87
TIGR02270410 conserved hypothetical protein. Members are found 83.79
KOG2038|consensus 988 83.18
KOG1824|consensus 1233 82.78
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 81.53
KOG0213|consensus1172 81.33
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 80.58
KOG0413|consensus1529 80.35
KOG1240|consensus 1431 80.06
>KOG0414|consensus Back     alignment and domain information 
Probab=100.00  E-value=5.7e-78  Score=703.65  Aligned_cols=449  Identities=28%  Similarity=0.444  Sum_probs=412.0

Q ss_pred             CcceeeccCCchhhhhcCCCCCceecccCChhhhHHHHHHHHHHhcCCCCchhhhhhhHHHHhhhccCCccHHHHHHHHH
Q psy8182           3 GVLEFVIPSSKDELLEKQATTQYYVQAELTLEEFNERIKDCFEALDNDGPMFILENFDTLYSMLTHFKSIEYKILHNVYT   82 (827)
Q Consensus         3 ~~~~F~iP~~~~dL~~~~~~~~y~v~~~~~~~~i~~~L~~~~~~l~~~~~~~I~e~FD~l~sl~~~~~~l~~~~~~~l~~   82 (827)
                      |+.+|+.|++..++...++..+|++.++.+..+++.++..+..+.+..+|.+++++||++||++++|.+++++.|+.+. 
T Consensus         1 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~k~~~~~~~~~~~~~~~~~d~ld~vysl~~~f~sl~~s~q~~~~-   79 (1251)
T KOG0414|consen    1 QDLQFLLPLSEYDLINSSGDPQYVVKEIFSAQELPVKLDEFDRSVRLMDPDFDLDHLDTVYSLLEDFESLAPSLQNWLS-   79 (1251)
T ss_pred             CcchhhcCCCHHHHHhccCCHHHHHHhcccccccchhHHHHHhhhhhcCchhhHHHHHHHHHHHhchhhcCHHHHHHHH-
Confidence            5689999999999999988779999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHhHHHHHHHHHHhhhcCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhhhcc
Q psy8182          83 KLLLRSLKEFSSILDNFLSGDSLDEELQ-EKYLNVVKMTLWVFTEFIINFETRLQKDYHKIVIDAKARKVKVRAAIKHNE  161 (827)
Q Consensus        83 d~l~s~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~lkm~~fll~~~~~~~e~~~~~~~~~~~~~~kg~k~~~~~~~~~~~  161 (827)
                      +++.|.++.+...+...+........+. .+|+|+.||+.|+...++...+...........-+.+||+|+...    ..
T Consensus        80 ~~l~s~lsvls~~~~~~~~~~~~~~~~~~~s~lna~km~~f~qi~v~~~~e~~~~s~~~~~~l~~~~k~kk~~~----n~  155 (1251)
T KOG0414|consen   80 EFLRSNLSVLSADLDAILDSTACLFTDLSNSYLNALKMGPFLQILVTKLKENGVSSVRRDQNLNVSGKLKKQSG----NL  155 (1251)
T ss_pred             HHHHHHHHhhccccccchhhhhcccccccHHHHHHHHHHHHHHHHHHHHHhccchhhhhchhhhhhccccCccc----ch
Confidence            9999999999999999887654333333 889999999999999999888875532111111122444332211    22


Q ss_pred             cccCcchHhHHHHHHHHHHHhcchhhcccCCCcchhHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHhcc
Q psy8182         162 KMQWDWDFHLSNGLNSIHQILKSKINKLWDPPVVEEEFVNMVANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYNH  241 (827)
Q Consensus       162 ~~~~~W~~~r~~~L~~l~~~L~l~l~~lw~~~~~ee~Fi~l~~~~~~~lLE~~~~~~~K~~~~r~~if~il~~~vk~~~~  241 (827)
                      ..+|+|+.+|++++..|.++|++++++||++++++|+|+++|++|||.++||+.+.  |+.+++++||+|||.++|+|||
T Consensus       156 ~~~~~~e~~r~~~l~~i~~lLqinlskL~~~s~~~e~flsl~~~~~yrllEn~~~~--k~~~t~~ai~~ilg~s~k~~~~  233 (1251)
T KOG0414|consen  156 ASGFNWEKQRNKLLCLIAQLLQINLSKLWLTSVEDEDFLSLIVDPIYRLLENEHVN--KNSSTKDAIFRILGSSVKRYNQ  233 (1251)
T ss_pred             hhccccccccchHHHHHHHHHHhhHHHhcCCChhHHHHHHHHHHHHHHHhcccccc--cchHHHHHHHHHHHHHHHHhhh
Confidence            44699999999999999999999999999999999999999999999999998755  9999999999999999999999


Q ss_pred             ccchhhhHHHHhhhcccccHHHHHHHHHHHHhhCCCchHHHHHHHHhccccCCCcCCchhhhHHHHHHHHHHHHhHHHHH
Q psy8182         242 GISCTVKIVQLLKNCEHLVSPLAQAVVMFIRNHGCKSLVREIVREISAMEDGNENAGQDSSKMIAAFLNEVAAHGAEYVI  321 (827)
Q Consensus       242 ~~~~~~~IiqlL~~~ehl~~~~Ae~v~~l~~~~~~~~l~~~ilreI~~~~~~d~~~D~~g~k~~s~FL~~Lae~~P~l~l  321 (827)
                      ..+++++|+|+|+||||++++.|+++..+.++||+.+|++.|+|+|+..++++  +|++|+|+++.||++||+++|.+++
T Consensus       234 ~~t~~~rilq~l~~fehl~~~~ad~v~l~~sky~~~sl~~~Iir~I~~~~~~~--~d~~g~k~v~~fL~elS~~~P~l~~  311 (1251)
T KOG0414|consen  234 CSTFASRILQNLRYFEHLAVHVADAVTLVRSKYGSVSLAGNIIRSIGSPEPNE--KDCAGPKIVGNFLVELSERVPKLML  311 (1251)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhcccchhc--ccccchhhHHHHHHHHHHHhHHHHH
Confidence            99999999999999999999999999999999999999999999999999996  9999999999999999999999999


Q ss_pred             hhHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCC
Q psy8182         322 PAMEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKA  401 (827)
Q Consensus       322 ~~is~l~~~Ld~esy~lR~avle~~g~ii~~~~~~~~~~~~~~~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~~  401 (827)
                      ++|+.|++|||+|||+|||||+|+|||++.+.++++++++..++.|+.+++.|.||++|+|||||+||||+|.+||+.++
T Consensus       312 ~~l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s  391 (1251)
T KOG0414|consen  312 RQLTLLVDLLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHS  391 (1251)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhCCCCCCCChhH----HHHhhhhhhh
Q psy8182         402 IPVAFTLKLLERAIGRLMDKSSNVVKYTVQLLKTMIESNPFAAKATTQY----YVQAELTLEE  460 (827)
Q Consensus       402 iP~~~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll~~nPf~~~L~~~~----~v~ev~~l~e  460 (827)
                      +|++++++|++.|+|||+|||++||||||||++++|.+|||+++++.+.    |++++.++.+
T Consensus       392 ~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~Pfs~~~~~~~~~~~~E~~~~~~e~  454 (1251)
T KOG0414|consen  392 IPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHPFSSELRSDDLRAKLEKELQKLEE  454 (1251)
T ss_pred             CCccHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhHHHHHHhhhh
Confidence            9999999999999999999999999999999999999999998887777    7887777663

>KOG0414|consensus Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>PF12922 Cnd1_N: non-SMC mitotic condensation complex subunit 1, N-term; InterPro: IPR024324 Condensin is a multi-subunit protein complex that acts as an essential regulator of chromosome condensation [] Back     alignment and domain information
>PF12922 Cnd1_N: non-SMC mitotic condensation complex subunit 1, N-term; InterPro: IPR024324 Condensin is a multi-subunit protein complex that acts as an essential regulator of chromosome condensation [] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>KOG1020|consensus Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG1020|consensus Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1060|consensus Back     alignment and domain information
>KOG1525|consensus Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1241|consensus Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG1248|consensus Back     alignment and domain information
>KOG1061|consensus Back     alignment and domain information
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG2025|consensus Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>KOG1824|consensus Back     alignment and domain information
>KOG0946|consensus Back     alignment and domain information
>KOG2171|consensus Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>KOG1248|consensus Back     alignment and domain information
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG2160|consensus Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG2171|consensus Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0211|consensus Back     alignment and domain information
>KOG1949|consensus Back     alignment and domain information
>KOG2259|consensus Back     alignment and domain information
>KOG1060|consensus Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>KOG2038|consensus Back     alignment and domain information
>KOG1824|consensus Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>KOG0213|consensus Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>KOG0413|consensus Back     alignment and domain information
>KOG1240|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query827
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-11
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 74.5 bits (182), Expect = 1e-13
 Identities = 88/694 (12%), Positives = 194/694 (27%), Gaps = 212/694 (30%)

Query: 68  HFKSIEYKILHNVYTKLLLRSLKEFSSILD---------NFLSGDSLDEELQEKY-LNVV 117
           H    E       Y  +L      F    D         + LS + +D  +  K  ++  
Sbjct: 5   HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64

Query: 118 KMTLWVF----TEFIINF-ETRLQKDYHKIVIDAKARKVKVRAAIKHNEKMQWDWD-FHL 171
               W       E +  F E  L+ +Y                        ++       
Sbjct: 65  LRLFWTLLSKQEEMVQKFVEEVLRINY------------------------KFLMSPIKT 100

Query: 172 -SNGLNSIHQILKSKINKLW-DPPVVEEEFVNMVANCCYKIIEDPCIASVKHKELRVFIF 229
                + + ++   + ++L+ D  V  +  V+         ++        + +LR  + 
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS--------RLQ-------PYLKLRQALL 145

Query: 230 QI--VGYLIKRYNHGISCTVKIVQLLKNCEHLVSPLAQAVVMFIRNHGC-KS-LVREIVR 285
           ++     ++     G                          +     G  K+ +  ++  
Sbjct: 146 ELRPAKNVLI---DG--------------------------VL----GSGKTWVALDVCL 172

Query: 286 EISAMEDGNENAGQDSSKMIAAFLNEVA-AHGAEYVIPAMEELLLNLEKESYLMRNCTLT 344
                          S K+      ++   +      P  E +L  L+K  Y + +   T
Sbjct: 173 ---------------SYKVQCKMDFKIFWLNLKNCNSP--ETVLEMLQKLLYQI-DPNWT 214

Query: 345 IVTELLINVYKR-EDLSDEAKE--QRDEYLNVL--LDHMHDVHTFVRTKVLQLF----QR 395
             ++   N+  R   +  E +   +   Y N L  L ++ +       K    F    + 
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN------AKAWNAFNLSCKI 268

Query: 396 LVLDKAIPVAFTLKLLERAIGRLMDKSSNVVK-YTVQLL------------KTMIESNPF 442
           L+  +   V   L         L   S  +       LL            + ++ +NP 
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328

Query: 443 A----------AKATTQYYVQAELTLEEFNERIKDCFEALDNDGPMFILENFDTLYSMLT 492
                        AT   +    +  ++    I+     L+   P      +  ++  L+
Sbjct: 329 RLSIIAESIRDGLATWDNWKH--VNCDKLTTIIESSLNVLE---P----AEYRKMFDRLS 379

Query: 493 HF-KSIEYKILHNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEKYLNVVKMTLWVFTE 551
            F  S    I   + + +    +K    ++ N L   SL E+  ++            T 
Sbjct: 380 VFPPSA--HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES-----------TI 426

Query: 552 FI--INFETRLQKDY----HKIVIDAKARKVKVRAAIKHNEKMQWDWD--------FHLS 597
            I  I  E +++ +     H+ ++D       +      ++ +    D         HL 
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVD----HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482

Query: 598 NGLNS-----IHQI------LKSKINKLWDPPVVEEEFVNMVANC-CYK--IIEDPCIAS 643
           N  +         +      L+ KI             +N +     YK  I ++     
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE 542

Query: 644 VKHKELRVFIFQIVGYLIKRYNHGISCTVKIVQL 677
                +  F+ +I   LI    +       ++++
Sbjct: 543 RLVNAILDFLPKIEENLI-CSKY-----TDLLRI 570
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query827
1qgr_A876 Protein (importin beta subunit); transport recepto 99.08
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 98.99
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 98.95
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 98.8
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 98.78
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 98.69
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 98.67
1qgr_A876 Protein (importin beta subunit); transport recepto 98.63
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 98.6
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 98.6
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 98.36
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 98.28
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 98.19
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 98.12
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 97.92
2x1g_F971 Cadmus; transport protein, developmental protein, 97.74
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 97.44
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 97.38
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 97.38
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 97.34
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 97.28
2x19_B963 Importin-13; nuclear transport, protein transport; 97.09
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 96.92
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 96.88
2db0_A253 253AA long hypothetical protein; heat repeats, hel 96.57
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 96.42
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 96.37
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 96.35
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 96.01
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 95.89
2x1g_F 971 Cadmus; transport protein, developmental protein, 95.77
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 95.57
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 95.19
2db0_A253 253AA long hypothetical protein; heat repeats, hel 95.14
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 95.09
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 95.01
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 94.78
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 94.73
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 94.65
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 94.5
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 94.28
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 94.01
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 93.87
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 93.78
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 93.47
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 93.44
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 93.4
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 93.37
2vgl_A 621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 93.28
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 93.23
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 93.2
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 92.68
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 91.99
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 91.49
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 91.48
1wa5_C 960 Importin alpha RE-exporter; nuclear transport/comp 91.05
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 90.38
1vdy_A140 Hypothetical protein (RAFL09-17-B18); structural g 88.65
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 88.28
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 88.23
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 87.95
3o2t_A386 Symplekin; heat repeat, scaffold, protein binding; 87.95
3grl_A651 General vesicular transport factor P115; vesicle t 87.79
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 87.43
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 86.97
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 86.79
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 86.62
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 84.98
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 82.89
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 82.14
3o2t_A 386 Symplekin; heat repeat, scaffold, protein binding; 80.25
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
Probab=99.08  E-value=7.3e-06  Score=99.30  Aligned_cols=595  Identities=10%  Similarity=0.095  Sum_probs=300.7

Q ss_pred             hHhHHHHHHHHHHHhcchhhcccCCCcchhHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHhccccc-hh
Q psy8182         168 DFHLSNGLNSIHQILKSKINKLWDPPVVEEEFVNMVANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYNHGIS-CT  246 (827)
Q Consensus       168 ~~~r~~~L~~l~~~L~l~l~~lw~~~~~ee~Fi~l~~~~~~~lLE~~~~~~~K~~~~r~~if~il~~~vk~~~~~~~-~~  246 (827)
                      ..-|..+++++..++..     .++...++.+.+.+...+...+.++      +..+|..++++++.++..|+..+. .-
T Consensus       188 ~~vr~~a~~~l~~~~~~-----~~~~~~~~~~~~~il~~l~~~~~~~------~~~vr~~a~~~l~~l~~~~~~~~~~~~  256 (876)
T 1qgr_A          188 NNVKLAATNALLNSLEF-----TKANFDKESERHFIMQVVCEATQCP------DTRVRVAALQNLVKIMSLYYQYMETYM  256 (876)
T ss_dssp             HHHHHHHHHHHHHHGGG-----CHHHHTSHHHHHHHHHHHHHHTTCS------SHHHHHHHHHHHHHHHHHSGGGCHHHH
T ss_pred             HHHHHHHHHHHHHHHHH-----HHHHHHhHHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            34577788888777652     1111112233344555566666544      357899999999999988765432 11


Q ss_pred             h-hHHHHhhh-cccc----cHHHHHHHHHHHHhh-------------------CC--------CchHHHHHHHHhccccC
Q psy8182         247 V-KIVQLLKN-CEHL----VSPLAQAVVMFIRNH-------------------GC--------KSLVREIVREISAMEDG  293 (827)
Q Consensus       247 ~-~IiqlL~~-~ehl----~~~~Ae~v~~l~~~~-------------------~~--------~~l~~~ilreI~~~~~~  293 (827)
                      . .+++.+.. ..+.    .....+++..+.+..                   ..        ..++..+++-++.....
T Consensus       257 ~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d  336 (876)
T 1qgr_A          257 GPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDEN  336 (876)
T ss_dssp             TTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSS
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhccccc
Confidence            1 34443322 1222    122223333333321                   00        12222333333322110


Q ss_pred             CCcCCchhhhHHHHHHHHHHHHhHHHHHhh-HHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcCCCc-hHHHHHHHHHH
Q psy8182         294 NENAGQDSSKMIAAFLNEVAAHGAEYVIPA-MEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLS-DEAKEQRDEYL  371 (827)
Q Consensus       294 d~~~D~~g~k~~s~FL~~Lae~~P~l~l~~-is~l~~~Ld~esy~lR~avle~~g~ii~~~~~~~~~~-~~~~~~rd~ll  371 (827)
                      +-..+...-+.....|..+++..|..+++. +..+...|.+++..+|.+.+.++|.+...      .. +........++
T Consensus       337 ~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~------~~~~~~~~~~~~~l  410 (876)
T 1qgr_A          337 DDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEG------PEPSQLKPLVIQAM  410 (876)
T ss_dssp             CCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS------SCHHHHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcC------CCHHHHHHHHHHHH
Confidence            001123334567788889998888655544 34555678889999999999999987632      12 22334557788


Q ss_pred             HHHHHhhcccchhHHHHHHHHHHHHHhCCC--C-ChHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhCC-------
Q psy8182         372 NVLLDHMHDVHTFVRTKVLQLFQRLVLDKA--I-PVAFTLKLLERAIGRLMDKSSNVVKYTVQLLKTMIESNP-------  441 (827)
Q Consensus       372 ~~L~er~~D~n~~vRskvLq~~~~L~~~~~--i-P~~~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll~~nP-------  441 (827)
                      ..|...+.|.++.||..|+.++.++++.-.  + ...+...++......|.|. ..||.+|...|..+...-+       
T Consensus       411 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~  489 (876)
T 1qgr_A          411 PTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVAD  489 (876)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhcccccc
Confidence            889999999999999999999999998521  1 2245678888899999996 8999999999999987621       


Q ss_pred             ----CC-CCCChhHHHHhhhhhhhhhhhHhhhhhhcCCCCchhhhhhhhhHHHhhhccccccHHHHHHHHHHHHHHHHHH
Q psy8182         442 ----FA-AKATTQYYVQAELTLEEFNERIKDCFEALDNDGPMFILENFDTLYSMLTHFKSIEYKILHNVYTKLLLRSLKE  516 (827)
Q Consensus       442 ----f~-~~L~~~~~v~ev~~l~ei~~~L~e~~~Al~~e~~~~i~e~FD~lySll~~~~~l~~~~~~~l~~~~l~~~~s~  516 (827)
                          .. ..+.  .+      ...+-+.|-........+...--...++++-.++...+.--......++ ..+   +..
T Consensus       490 ~~~~~~~~~l~--~~------~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~-~~l---~~~  557 (876)
T 1qgr_A          490 DQEEPATYCLS--SS------FELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTT-LVI---MER  557 (876)
T ss_dssp             SCCCCCCCSST--TT------HHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHH-HHH---HHH
T ss_pred             ccccccchhhh--Hh------HHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHH-HHH---HHH
Confidence                00 0111  01      1122222222221111111211245777777777766542222233444 332   222


Q ss_pred             HHHhHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhccchhhhh--hhhhhhhhhhhhhcccccCcch
Q psy8182         517 FSSILDNFLSGDSLDEELQEKYLNVVKMTLWVFTEFIINFE-TRLQKDYHKIVIDA--KARKVKVRAAIKHNEKMQWDWD  593 (827)
Q Consensus       517 l~~~l~~~~~~~~~~~~~~~~~~~~lkm~~fLl~~~~~~~e-~~~~~~~~~~~~~~--kg~k~~~~~~~~~~~~~~~~W~  593 (827)
                      +...+.  +.....+..+....-+.....+-.+..++.... .... ..-+...+.  +.=+..         . + .| 
T Consensus       558 l~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~l~~~l~~~l~~~---------~-~-~~-  622 (876)
T 1qgr_A          558 LQQVLQ--MESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDAL-QISDVVMASLLRMFQST---------A-G-SG-  622 (876)
T ss_dssp             HHHHHT--TTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHH-TTHHHHHHHHHHHC----------------CC-
T ss_pred             HHHHHH--HHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhh-HHHHHHHHHHHHHHHhc---------c-C-CC-
Confidence            222211  111100111111000000111112222221111 0000 000000000  000000         0 0 01 


Q ss_pred             hhHHHHHHHHHHHhccccccccCCChhhHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHhhCcchh-hHH
Q psy8182         594 FHLSNGLNSIHQILKSKINKLWDPPVVEEEFVNMVANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYNHGIS-CTV  672 (827)
Q Consensus       594 ~~r~~~L~~l~~~L~l~l~~lw~~~~~ee~Fi~l~~~~~y~lLE~~~~~~~K~~~ir~~if~il~~~vk~y~h~~~-~~~  672 (827)
                      .-++.++.++..+..- +..-+.      .|+.-+...++..++++.     +..+|...+..+|.+++..|..+. ...
T Consensus       623 ~v~~~a~~~l~~l~~~-~~~~~~------~~~~~~~~~l~~~l~~~~-----~~~vr~~a~~~l~~l~~~~~~~~~~~~~  690 (876)
T 1qgr_A          623 GVQEDALMAVSTLVEV-LGGEFL------KYMEAFKPFLGIGLKNYA-----EYQVCLAAVGLVGDLCRALQSNIIPFCD  690 (876)
T ss_dssp             HHHHHHHHHHHHHHHH-HGGGGG------GGHHHHHHHHHHHHHHCT-----THHHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred             CccHHHHHHHHHHHHH-HHhhHH------HHHHHHHHHHHHHHcCcc-----hHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence            1245555555555541 111111      234446677778887762     467999999999999988774332 223


Q ss_pred             HHH----HHHhh---hcccchHHHHHHHHHHHhcC--CcchHHHHHHHHhcccCCCccCCC--------cc----hhHHH
Q psy8182         673 KIV----QLLKN---CEHLVSPLAQAVVMFIRNHG--CKSLVREIVREISAMEDGNENAGQ--------DS----SKMIA  731 (827)
Q Consensus       673 ~Ii----qlL~~---~Ehl~~~~Ae~v~~l~~~~~--~~~l~~eilreI~~~~~~d~~~Ds--------~g----~K~~s  731 (827)
                      .|+    +.|..   .+.+-...+.++..+....+  .......++.-+.+....+...|.        .-    .+.++
T Consensus       691 ~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~  770 (876)
T 1qgr_A          691 EVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYT  770 (876)
T ss_dssp             HHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHH
Confidence            333    44443   12344466666666666443  223344444444332111000000        11    12222


Q ss_pred             HHHHHHHHHh------HHHHHhhHHHHHhh----hCCC--ChhHHhHHHHHHHHHHHHhhccCCCChHHHHH-HHHHHHH
Q psy8182         732 AFLNEVAAHG------AEYVIPAMEELLLN----LEKE--SYLMRNCTLTIVTELLINVYKREDLSDEAKEQ-RDEYLNV  798 (827)
Q Consensus       732 ~FL~~Lae~~------P~lvl~~~s~L~~~----Ld~E--sy~lR~aVlev~g~ii~~~l~~~~~~e~~k~~-rd~~ld~  798 (827)
                      ..+..+....      +..+-+.+..+++.    .+++  +-.+|.+.+.++|.++...  +   .+..... .+.++..
T Consensus       771 ~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~--~---~~~~~~~~~~~~i~~  845 (876)
T 1qgr_A          771 GIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAF--G---KDVLKLVEARPMIHE  845 (876)
T ss_dssp             HHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHH--C---THHHHHHHTSHHHHH
T ss_pred             HHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh--C---cHHHHHHHhcHHHHH
Confidence            2223333210      12223333333333    3666  6799999999999999865  2   1133333 4455666


Q ss_pred             HHH-hcCcCChhhhhHHHHHHHHhhcC
Q psy8182         799 LLD-HMHDVHTFVRTKVSTEKKLECWQ  824 (827)
Q Consensus       799 L~e-r~~D~nayVRsKvlq~~~~lc~~  824 (827)
                      |.+ -+.|-++-||..|......+...
T Consensus       846 ll~~~l~~~~~~~r~~a~~a~~~~~~~  872 (876)
T 1qgr_A          846 LLTEGRRSKTNKAKTLARWATKELRKL  872 (876)
T ss_dssp             HHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcCCHhHHHHHHHHHHHHHHh
Confidence            666 55699999999999888877654
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query827
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 98.73
d1b3ua_588 Constant regulatory domain of protein phosphatase 98.62
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.51
d1b3ua_588 Constant regulatory domain of protein phosphatase 98.35
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 98.3
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 98.26
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 98.15
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 98.04
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 97.95
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 97.93
d2bpta1 861 Importin beta {Baker's yeast (Saccharomyces cerevi 97.93
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 97.89
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 97.63
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 97.16
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 96.86
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 96.71
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 95.15
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 94.52
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 92.7
d1wa5c_ 959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 91.54
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 91.25
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 90.16
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 89.89
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 89.21
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 86.02
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 81.56
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 81.4
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure