Psyllid ID: psy8195

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190--
MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGKNI
cHHHHHHHHccccccccccccEEEEEccEEEEEccccccccccHHHHHHHHHHHccccccccEEEEEcccccccccccHHHHHHHHccccEEEEEccccccccccHHHHHHHHcccEEEcccHHHHHHHHHHHHHHHHHccccEEEEEcccccccccccccccccccccHHHHHHHHHHHHHcccEEEcccc
cHHHHHHHHHcccccccccEEEEEEEccEEEEccccccccccHHHHHHHHHHHHccccccccEEEEEEccccccccccHHHHHHHHccccEEEEEEccccccHccHHHHHHHHcccEEEcccHHHHHHHHHHHHHHHHHccccEEEEEEEEEccccEEccccccEEcccHHHHHHHHHHHHHHcEEEEcccc
MTLALQQAKlsinsspnprvgcvivkekriiscgytkspggnhAEIDALLNAAAQgydvynstvyitlepcsyfgytppcteALIKSGIKKVIIAindpnplvsgkGVAQLISAGISVKQGLMQKEAYEINIGFfsrmqrgipWVRMKIASSldnktslynnssqwitskesrndsHIWRARSCailtgkni
MTLALQQAklsinsspnprvgcVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQwitskesrndshiwrarscailtgkni
MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGKNI
******************RVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYN****WI*********HIWRARSCAIL*****
MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGKNI
MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGKNI
*TLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGKN*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGKNI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query192 2.2.26 [Sep-21-2011]
O66534 356 Riboflavin biosynthesis p yes N/A 0.979 0.528 0.484 2e-46
P25539 367 Riboflavin biosynthesis p N/A N/A 0.963 0.504 0.460 6e-46
Q89AB0 372 Riboflavin biosynthesis p yes N/A 0.963 0.497 0.497 2e-44
P70814 371 Riboflavin biosynthesis p yes N/A 0.895 0.463 0.458 9e-42
P44326 372 Riboflavin biosynthesis p yes N/A 0.927 0.478 0.441 2e-40
P17618 361 Riboflavin biosynthesis p yes N/A 0.958 0.509 0.421 2e-39
Q8K9A4147 Diaminohydroxyphosphoribo yes N/A 0.729 0.952 0.569 9e-37
P50853 376 Riboflavin biosynthesis p yes N/A 0.968 0.494 0.426 2e-36
Q9PLJ6 371 Riboflavin biosynthesis p yes N/A 0.911 0.471 0.449 8e-35
Q9Z735 376 Riboflavin biosynthesis p yes N/A 0.911 0.465 0.426 2e-34
>sp|O66534|RIBD_AQUAE Riboflavin biosynthesis protein RibD OS=Aquifex aeolicus (strain VF5) GN=ribD PE=3 SV=1 Back     alignment and function desciption
 Score =  185 bits (470), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 93/192 (48%), Positives = 129/192 (67%), Gaps = 4/192 (2%)

Query: 1   MTLALQQAKLSIN-SSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
           M LAL  AK     + PNP VG V+VKE +I+  GY +  G  HAE+ AL  A   G   
Sbjct: 10  MKLALSLAKKRKGYTHPNPTVGAVVVKEGKIVGLGYHEKAGKPHAEVMALGQA---GEKA 66

Query: 60  YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
             +T+Y+TLEPC++FG TPPCT+A+I+SGIK+V++A  DPNPL+SGKGV +L +AGI V 
Sbjct: 67  KGATLYVTLEPCTHFGRTPPCTDAIIRSGIKRVVVATLDPNPLMSGKGVEKLRNAGIEVD 126

Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
            G+ ++EA E+N  FF+ + +  P++ +K A +LD K +    SS+WITSKESR  +HI 
Sbjct: 127 VGVCEEEARELNEDFFTYITQERPYITLKWAQTLDGKLATLTGSSKWITSKESRKVAHIL 186

Query: 180 RARSCAILTGKN 191
           R  + A+L G N
Sbjct: 187 RREATAVLVGVN 198
Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'-phosphate.
Aquifex aeolicus (strain VF5) (taxid: 224324)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 9EC: 3
>sp|P25539|RIBD_ECOLI Riboflavin biosynthesis protein RibD OS=Escherichia coli (strain K12) GN=ribD PE=1 SV=1 Back     alignment and function description
>sp|Q89AB0|RIBD_BUCBP Riboflavin biosynthesis protein RibD OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) GN=ribD PE=3 SV=1 Back     alignment and function description
>sp|P70814|RIBD_BACAM Riboflavin biosynthesis protein RibD OS=Bacillus amyloliquefaciens GN=ribD PE=3 SV=1 Back     alignment and function description
>sp|P44326|RIBD_HAEIN Riboflavin biosynthesis protein RibD OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ribD PE=3 SV=1 Back     alignment and function description
>sp|P17618|RIBD_BACSU Riboflavin biosynthesis protein RibD OS=Bacillus subtilis (strain 168) GN=ribD PE=1 SV=1 Back     alignment and function description
>sp|Q8K9A4|RIBD1_BUCAP Diaminohydroxyphosphoribosylamino-pyrimidine deaminase OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) GN=ribD1 PE=3 SV=1 Back     alignment and function description
>sp|P50853|RIBD_ACTPL Riboflavin biosynthesis protein RibD OS=Actinobacillus pleuropneumoniae GN=ribD PE=3 SV=2 Back     alignment and function description
>sp|Q9PLJ6|RIBD_CHLMU Riboflavin biosynthesis protein RibD OS=Chlamydia muridarum (strain MoPn / Nigg) GN=ribD PE=3 SV=2 Back     alignment and function description
>sp|Q9Z735|RIBD_CHLPN Riboflavin biosynthesis protein RibD OS=Chlamydia pneumoniae GN=ribD PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query192
300312948 354 bifunctional diaminohydroxyphosphoribosy 0.984 0.533 0.605 8e-69
399018280 372 riboflavin biosynthesis protein RibD [He 0.984 0.508 0.594 7e-68
398832168 373 riboflavin biosynthesis protein RibD [He 0.984 0.506 0.6 3e-67
340788578 382 5-amino-6-(5-phosphoribosylamino)uracil 0.984 0.494 0.6 5e-67
409407402 373 bifuntional protein [Herbaspirillum sp. 0.984 0.506 0.626 1e-65
395761486 363 5-amino-6-(5-phosphoribosylamino)uracil 0.984 0.520 0.568 4e-64
445495767 356 bifunctional riboflavin biosynthesis pro 0.984 0.530 0.557 4e-63
421749984 372 multifunctional diaminohydroxyphosphorib 0.916 0.473 0.585 9e-63
393776208 380 riboflavin biosynthesis protein RibD [Ra 0.968 0.489 0.577 2e-62
83746190 370 Diaminohydroxyphosphoribosylaminopyrimid 0.968 0.502 0.566 2e-62
>gi|300312948|ref|YP_003777040.1| bifunctional diaminohydroxyphosphoribosyl aminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Herbaspirillum seropedicae SmR1] gi|300075733|gb|ADJ65132.1| bifunctional enzyme: diaminohydroxyphosphoribosyl aminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase protein [Herbaspirillum seropedicae SmR1] Back     alignment and taxonomy information
 Score =  265 bits (676), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 115/190 (60%), Positives = 155/190 (81%), Gaps = 1/190 (0%)

Query: 1   MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
           M LAL QA    ++++PNPRVGCVIVK++RII  G+T+ PGGNHAEI A+ +AAA+G+DV
Sbjct: 1   MALALIQAGFGMLDTTPNPRVGCVIVKDQRIIGAGFTQPPGGNHAEIQAMADAAARGHDV 60

Query: 60  YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
             +TVY+TLEPCS+FG TPPC +ALI++G+ +V+ AI DPNP+V+G+G+A+L +AGI V 
Sbjct: 61  RGATVYVTLEPCSHFGRTPPCADALIRAGVARVVAAIADPNPMVAGQGLARLQAAGIEVS 120

Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
            GL+++EA +INIGF  RM+ G PWVRMK A+SLD KT+L+N  SQWIT + +R+D HIW
Sbjct: 121 CGLLEEEARDINIGFLHRMRTGRPWVRMKSAASLDGKTALHNGVSQWITGQAARDDGHIW 180

Query: 180 RARSCAILTG 189
           RAR+CAI+ G
Sbjct: 181 RARACAIMAG 190

Source: Herbaspirillum seropedicae SmR1

Species: Herbaspirillum seropedicae

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria
>gi|399018280|ref|ZP_10720461.1| riboflavin biosynthesis protein RibD [Herbaspirillum sp. CF444] gi|398101680|gb|EJL91887.1| riboflavin biosynthesis protein RibD [Herbaspirillum sp. CF444] Back     alignment and taxonomy information
>gi|398832168|ref|ZP_10590332.1| riboflavin biosynthesis protein RibD [Herbaspirillum sp. YR522] gi|398223705|gb|EJN10040.1| riboflavin biosynthesis protein RibD [Herbaspirillum sp. YR522] Back     alignment and taxonomy information
>gi|340788578|ref|YP_004754043.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Collimonas fungivorans Ter331] gi|340553845|gb|AEK63220.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Collimonas fungivorans Ter331] Back     alignment and taxonomy information
>gi|409407402|ref|ZP_11255853.1| bifuntional protein [Herbaspirillum sp. GW103] gi|386433153|gb|EIJ45979.1| bifuntional protein [Herbaspirillum sp. GW103] Back     alignment and taxonomy information
>gi|395761486|ref|ZP_10442155.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Janthinobacterium lividum PAMC 25724] Back     alignment and taxonomy information
>gi|445495767|ref|ZP_21462811.1| bifunctional riboflavin biosynthesis protein RibD [Janthinobacterium sp. HH01] gi|444791928|gb|ELX13475.1| bifunctional riboflavin biosynthesis protein RibD [Janthinobacterium sp. HH01] Back     alignment and taxonomy information
>gi|421749984|ref|ZP_16187313.1| multifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Cupriavidus necator HPC(L)] gi|409771052|gb|EKN53478.1| multifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Cupriavidus necator HPC(L)] Back     alignment and taxonomy information
>gi|393776208|ref|ZP_10364504.1| riboflavin biosynthesis protein RibD [Ralstonia sp. PBA] gi|392716597|gb|EIZ04175.1| riboflavin biosynthesis protein RibD [Ralstonia sp. PBA] Back     alignment and taxonomy information
>gi|83746190|ref|ZP_00943244.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Ralstonia solanacearum UW551] gi|207744096|ref|YP_002260488.1| riboflavin biosynthesis bifunctional protein ribd : diaminohydroxyphosphoribosylaminopyrimidine deaminase + 5-amino-6-(5-phosphoribosylamino)uracil reductase [Ralstonia solanacearum IPO1609] gi|83727156|gb|EAP74280.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Ralstonia solanacearum UW551] gi|206595500|emb|CAQ62427.1| riboflavin biosynthesis bifunctional protein ribd : diaminohydroxyphosphoribosylaminopyrimidine deaminase + 5-amino-6-(5-phosphoribosylamino)uracil reductase [Ralstonia solanacearum IPO1609] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query192
TIGR_CMR|SO_3469 381 SO_3469 "riboflavin biosynthes 0.968 0.488 0.489 1e-45
TIGR_CMR|CPS_0730 389 CPS_0730 "riboflavin biosynthe 0.984 0.485 0.461 9.3e-43
UNIPROTKB|P25539 367 ribD "fused diaminohydroxyphos 0.963 0.504 0.460 1.4e-41
UNIPROTKB|Q9KPU1 367 VC_2271 "Riboflavin-specific d 0.963 0.504 0.470 1.7e-41
TIGR_CMR|VC_2271 367 VC_2271 "riboflavin biosynthes 0.963 0.504 0.470 1.7e-41
TIGR_CMR|DET_1190 365 DET_1190 "riboflavin biosynthe 0.979 0.515 0.484 7.5e-41
TIGR_CMR|ECH_0169 360 ECH_0169 "riboflavin biosynthe 0.979 0.522 0.453 4.8e-39
TIGR_CMR|BA_4331 370 BA_4331 "riboflavin biosynthes 0.979 0.508 0.463 1.3e-36
TIGR_CMR|CHY_1475 361 CHY_1475 "riboflavin biosynthe 0.968 0.515 0.434 1.7e-36
TIGR_CMR|SPO_1754 364 SPO_1754 "riboflavin biosynthe 0.875 0.461 0.474 4.4e-36
TIGR_CMR|SO_3469 SO_3469 "riboflavin biosynthesis protein RibD" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
 Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 93/190 (48%), Positives = 127/190 (66%)

Query:     1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
             M+ A+Q A+    ++ PNP VGCVIV + +I+  GY +  G  HAE+ AL  A   G   
Sbjct:    11 MSRAIQLARKGFYTTRPNPSVGCVIVNDNQIVGEGYHQKAGEPHAEVHALRMA---GELA 67

Query:    60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
               +T Y+TLEPCS++G TPPC  ALI  G+K+V++A+ DPNP V G+G+  L  AGI V 
Sbjct:    68 RGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVGGRGIQMLRDAGIQVD 127

Query:   120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
              GL + EAY +N+GF  RM+ G+PWV +K+A+SLD KT+L N  S+WIT  E+R D    
Sbjct:   128 VGLHRDEAYALNLGFMKRMESGLPWVTVKLAASLDGKTALSNGVSKWITGPEARRDVQRL 187

Query:   180 RARSCAILTG 189
             R RSCA++TG
Sbjct:   188 RLRSCALITG 197
GO:0008703 "5-amino-6-(5-phosphoribosylamino)uracil reductase activity" evidence=ISS
GO:0008835 "diaminohydroxyphosphoribosylaminopyrimidine deaminase activity" evidence=ISS
GO:0009231 "riboflavin biosynthetic process" evidence=ISS
TIGR_CMR|CPS_0730 CPS_0730 "riboflavin biosynthesis protein RibD" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
UNIPROTKB|P25539 ribD "fused diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KPU1 VC_2271 "Riboflavin-specific deaminase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2271 VC_2271 "riboflavin biosynthesis protein RibD" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|DET_1190 DET_1190 "riboflavin biosynthesis protein RibD" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|ECH_0169 ECH_0169 "riboflavin biosynthesis protein RibD" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4331 BA_4331 "riboflavin biosynthesis protein RibD" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1475 CHY_1475 "riboflavin biosynthesis protein RibD" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_1754 SPO_1754 "riboflavin biosynthesis protein RibD" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8K9A4RIBD1_BUCAP3, ., 5, ., 4, ., 2, 60.56940.72910.9523yesN/A
P57533RIBD1_BUCAI3, ., 5, ., 4, ., 2, 60.50.72910.9523yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.1.1LOW CONFIDENCE prediction!
3rd Layer3.5.4.1LOW CONFIDENCE prediction!
3rd Layer3.5.40.921
3rd Layer3.5.4.260.914
3rd Layer1.1.1.193LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query192
PRK10786 367 PRK10786, ribD, bifunctional diaminohydroxyphospho 6e-68
TIGR00326 344 TIGR00326, eubact_ribD, riboflavin biosynthesis pr 1e-63
COG0117146 COG0117, RibD, Pyrimidine deaminase [Coenzyme meta 1e-57
cd01284115 cd01284, Riboflavin_deaminase-reductase, Riboflavi 9e-46
PLN02807 380 PLN02807, PLN02807, diaminohydroxyphosphoribosylam 5e-41
pfam00383104 pfam00383, dCMP_cyt_deam_1, Cytidine and deoxycyti 5e-23
cd01286131 cd01286, deoxycytidylate_deaminase, Deoxycytidylat 4e-20
COG2131164 COG2131, ComEB, Deoxycytidylate deaminase [Nucleot 8e-19
cd01285109 cd01285, nucleoside_deaminase, Nucleoside deaminas 2e-17
COG1985 218 COG1985, RibD, Pyrimidine reductase, riboflavin bi 3e-17
cd0078696 cd00786, cytidine_deaminase-like, Cytidine and deo 1e-14
COG0590152 COG0590, CumB, Cytosine/adenosine deaminases [Nucl 7e-14
TIGR02571151 TIGR02571, ComEB, ComE operon protein 2 8e-11
PHA02588168 PHA02588, cd, deoxycytidylate deaminase; Provision 5e-10
PRK10860172 PRK10860, PRK10860, tRNA-specific adenosine deamin 1e-09
pfam01872 201 pfam01872, RibD_C, RibD C-terminal domain 3e-09
TIGR00227 216 TIGR00227, ribD_Cterm, riboflavin-specific deamina 5e-09
cd01283112 cd01283, cytidine_deaminase, Cytidine deaminase zi 0.002
>gnl|CDD|182729 PRK10786, ribD, bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional Back     alignment and domain information 
 Score =  211 bits (538), Expect = 6e-68
 Identities = 89/191 (46%), Positives = 125/191 (65%), Gaps = 8/191 (4%)

Query: 1   MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNA--AAQGY 57
           M  AL+ A+     + PNP VGCVIVK+  I+  GY +  G  HAE+ AL  A   A+G 
Sbjct: 7   MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKG- 65

Query: 58  DVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGIS 117
               +T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L  AGI 
Sbjct: 66  ----ATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121

Query: 118 VKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSH 177
           V  GLM  EA  +N GF  RM+ G P++++K+ +SLD +T++ +  SQWITS ++R D  
Sbjct: 122 VSHGLMMSEAEALNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181

Query: 178 IWRARSCAILT 188
             RA+S AILT
Sbjct: 182 RLRAQSHAILT 192

Length = 367
>gnl|CDD|232920 TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD Back     alignment and domain information
>gnl|CDD|223195 COG0117, RibD, Pyrimidine deaminase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|238611 cd01284, Riboflavin_deaminase-reductase, Riboflavin-specific deaminase Back     alignment and domain information
>gnl|CDD|215433 PLN02807, PLN02807, diaminohydroxyphosphoribosylaminopyrimidine deaminase Back     alignment and domain information
>gnl|CDD|215887 pfam00383, dCMP_cyt_deam_1, Cytidine and deoxycytidylate deaminase zinc-binding region Back     alignment and domain information
>gnl|CDD|238613 cd01286, deoxycytidylate_deaminase, Deoxycytidylate deaminase domain Back     alignment and domain information
>gnl|CDD|225042 COG2131, ComEB, Deoxycytidylate deaminase [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|238612 cd01285, nucleoside_deaminase, Nucleoside deaminases include adenosine, guanine and cytosine deaminases Back     alignment and domain information
>gnl|CDD|224896 COG1985, RibD, Pyrimidine reductase, riboflavin biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|238406 cd00786, cytidine_deaminase-like, Cytidine and deoxycytidylate deaminase zinc-binding region Back     alignment and domain information
>gnl|CDD|223663 COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|131622 TIGR02571, ComEB, ComE operon protein 2 Back     alignment and domain information
>gnl|CDD|222894 PHA02588, cd, deoxycytidylate deaminase; Provisional Back     alignment and domain information
>gnl|CDD|182786 PRK10860, PRK10860, tRNA-specific adenosine deaminase; Provisional Back     alignment and domain information
>gnl|CDD|216753 pfam01872, RibD_C, RibD C-terminal domain Back     alignment and domain information
>gnl|CDD|129330 TIGR00227, ribD_Cterm, riboflavin-specific deaminase C-terminal domain Back     alignment and domain information
>gnl|CDD|238610 cd01283, cytidine_deaminase, Cytidine deaminase zinc-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 192
PRK10786 367 ribD bifunctional diaminohydroxyphosphoribosylamin 100.0
PLN02807 380 diaminohydroxyphosphoribosylaminopyrimidine deamin 100.0
TIGR00326 344 eubact_ribD riboflavin biosynthesis protein RibD. 100.0
COG0117146 RibD Pyrimidine deaminase [Coenzyme metabolism] 100.0
cd01284115 Riboflavin_deaminase-reductase Riboflavin-specific 100.0
PRK10860172 tRNA-specific adenosine deaminase; Provisional 100.0
COG0590152 CumB Cytosine/adenosine deaminases [Nucleotide tra 100.0
PRK14719 360 bifunctional RNAse/5-amino-6-(5-phosphoribosylamin 100.0
PHA02588168 cd deoxycytidylate deaminase; Provisional 99.97
TIGR02571151 ComEB ComE operon protein 2. This protein is found 99.97
cd01285109 nucleoside_deaminase Nucleoside deaminases include 99.96
cd01286131 deoxycytidylate_deaminase Deoxycytidylate deaminas 99.95
cd0078696 cytidine_deaminase-like Cytidine and deoxycytidyla 99.94
KOG1018|consensus169 99.93
PF00383102 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deam 99.92
COG2131164 ComEB Deoxycytidylate deaminase [Nucleotide transp 99.91
KOG3127|consensus230 99.73
cd01283112 cytidine_deaminase Cytidine deaminase zinc-binding 99.68
PRK14059 251 hypothetical protein; Provisional 99.63
KOG2771|consensus344 99.16
PF14439136 Bd3614-deam: Bd3614-like deaminase 98.95
TIGR01354127 cyt_deam_tetra cytidine deaminase, homotetrameric. 98.82
PRK06848139 hypothetical protein; Validated 97.92
PRK12411132 cytidine deaminase; Provisional 97.85
PRK05578131 cytidine deaminase; Validated 97.8
TIGR01355283 cyt_deam_dimer cytidine deaminase, homodimeric. Th 97.36
PLN02402303 cytidine deaminase 97.05
PRK08298136 cytidine deaminase; Validated 97.04
KOG0833|consensus173 96.93
COG0295134 Cdd Cytidine deaminase [Nucleotide transport and m 96.89
PRK09027295 cytidine deaminase; Provisional 96.79
PF08210188 APOBEC_N: APOBEC-like N-terminal domain; InterPro: 96.64
PF14437146 MafB19-deam: MafB19-like deaminase 96.46
PLN02182339 cytidine deaminase 96.31
PRK09027295 cytidine deaminase; Provisional 95.87
TIGR01355283 cyt_deam_dimer cytidine deaminase, homodimeric. Th 93.22
PF14431125 YwqJ-deaminase: YwqJ-like deaminase 90.17
PLN02402303 cytidine deaminase 90.02
PF14440118 XOO_2897-deam: Xanthomonas XOO_2897-like deaminase 87.68
PF08211124 dCMP_cyt_deam_2: Cytidine and deoxycytidylate deam 85.75
>PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=8.3e-63  Score=431.81  Aligned_cols=188  Identities=46%  Similarity=0.801  Sum_probs=182.3

Q ss_pred             CHHHHHHHhhc-ccCCCCCeEEEEEEeCCeEEEEeecCCCCCccHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCChh
Q psy8195           1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPP   79 (192)
Q Consensus         1 M~~Ai~~A~~~-~~~~~~p~vGaviv~~g~ii~~g~n~~~~~~HAE~~ai~~a~~~~~~~~~~tlYvTlEPC~~~g~tp~   79 (192)
                      |++|+++|+++ ..++++|+||||||+||+||++|||...+++|||++||+++.   ..++|||||||||||+|+|||||
T Consensus         7 m~~A~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~~g~~HAE~~ai~~a~---~~~~g~tlyvTlEPC~~~g~t~m   83 (367)
T PRK10786          7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAG---EKAKGATAYVTLEPCSHHGRTPP   83 (367)
T ss_pred             HHHHHHHHHhcCcCCCCCCCEEEEEEeCCEEEEEEeCCCCCCCCHHHHHHHHHh---hhcCCCEEEEecCCccCCCCChH
Confidence            89999999999 678899999999999999999999999999999999999994   45799999999999999999999


Q ss_pred             hHHHHHHcCCCEEEEEeeCCCCCCcchhHHhhhhCCCeeeeccchHHHHhhccccccccccCCceeeeeecccCCCcccc
Q psy8195          80 CTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSL  159 (192)
Q Consensus        80 C~~ai~~~gI~rvv~~~~dp~~~~~g~g~~~l~~~gi~v~~g~l~~e~~~l~~~f~~~~~~~rP~v~~K~A~SlDG~ia~  159 (192)
                      |+.+|+++||+||||+..||++.+.|++.+.|+++||+|..|++++||.++++.||++.++++|||++|+|+|+||+|++
T Consensus        84 C~~aii~agI~rVv~~~~dp~~~~~g~~~~~l~~~gi~v~~~~~~~e~~~l~~~f~~~~~~~rP~V~~k~A~SlDGkia~  163 (367)
T PRK10786         84 CCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGLMMSEAEALNKGFLKRMRTGFPYIQLKLGASLDGRTAM  163 (367)
T ss_pred             HHHHHHHhCCCEEEEecCCCCcccCchHHHHHhcCCcEEEcCCcHHHHHHHHHHHHHHhhcccceEEEEEeecCCCCccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccccCCHHHHHHHHHHHhhcCeEEEccC
Q psy8195         160 YNNSSQWITSKESRNDSHIWRARSCAILTGKN  191 (192)
Q Consensus       160 ~~g~s~~it~~~sr~~~h~lR~~~daIlvG~~  191 (192)
                      .+|+|+||||++++.++|+||+++||||||++
T Consensus       164 ~~g~s~~is~~~~~~~~h~lRa~~DaIlVGa~  195 (367)
T PRK10786        164 ASGESQWITSPQARRDVQRLRAQSHAILTSSA  195 (367)
T ss_pred             CCCcccccCCHHHHHHHHHHHhHCCEEEECcC
Confidence            99999999999999999999999999999987

>PLN02807 diaminohydroxyphosphoribosylaminopyrimidine deaminase Back     alignment and domain information
>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD Back     alignment and domain information
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism] Back     alignment and domain information
>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase Back     alignment and domain information
>PRK10860 tRNA-specific adenosine deaminase; Provisional Back     alignment and domain information
>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional Back     alignment and domain information
>PHA02588 cd deoxycytidylate deaminase; Provisional Back     alignment and domain information
>TIGR02571 ComEB ComE operon protein 2 Back     alignment and domain information
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases Back     alignment and domain information
>cd01286 deoxycytidylate_deaminase Deoxycytidylate deaminase domain Back     alignment and domain information
>cd00786 cytidine_deaminase-like Cytidine and deoxycytidylate deaminase zinc-binding region Back     alignment and domain information
>KOG1018|consensus Back     alignment and domain information
>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3 Back     alignment and domain information
>COG2131 ComEB Deoxycytidylate deaminase [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG3127|consensus Back     alignment and domain information
>cd01283 cytidine_deaminase Cytidine deaminase zinc-binding domain Back     alignment and domain information
>PRK14059 hypothetical protein; Provisional Back     alignment and domain information
>KOG2771|consensus Back     alignment and domain information
>PF14439 Bd3614-deam: Bd3614-like deaminase Back     alignment and domain information
>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric Back     alignment and domain information
>PRK06848 hypothetical protein; Validated Back     alignment and domain information
>PRK12411 cytidine deaminase; Provisional Back     alignment and domain information
>PRK05578 cytidine deaminase; Validated Back     alignment and domain information
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric Back     alignment and domain information
>PLN02402 cytidine deaminase Back     alignment and domain information
>PRK08298 cytidine deaminase; Validated Back     alignment and domain information
>KOG0833|consensus Back     alignment and domain information
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK09027 cytidine deaminase; Provisional Back     alignment and domain information
>PF08210 APOBEC_N: APOBEC-like N-terminal domain; InterPro: IPR013158 This domain is found at the N terminus of the Apolipoprotein B mRNA editing enzyme Back     alignment and domain information
>PF14437 MafB19-deam: MafB19-like deaminase Back     alignment and domain information
>PLN02182 cytidine deaminase Back     alignment and domain information
>PRK09027 cytidine deaminase; Provisional Back     alignment and domain information
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric Back     alignment and domain information
>PF14431 YwqJ-deaminase: YwqJ-like deaminase Back     alignment and domain information
>PLN02402 cytidine deaminase Back     alignment and domain information
>PF14440 XOO_2897-deam: Xanthomonas XOO_2897-like deaminase Back     alignment and domain information
>PF08211 dCMP_cyt_deam_2: Cytidine and deoxycytidylate deaminase zinc-binding region ; InterPro: IPR013171 This region contains the zinc-binding domain of cytidine and deoxycytidylate deaminase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query192
2g6v_A 402 The Crystal Structure Of Ribd From Escherichia Coli 1e-44
2o7p_A 380 The Crystal Structure Of Ribd From Escherichia Coli 1e-44
2b3z_A 373 Crystal Structure Of A Bifunctional Deaminase And R 2e-40
2hxv_A 360 Crystal Structure Of A Diaminohydroxyphosphoribosyl 2e-34
1z3a_A168 Crystal Structure Of Trna Adenosine Deaminase Tada 2e-09
3ocq_A183 Crystal Structure Of Trna-Specific Adenosine Deamin 3e-09
1vq2_A193 Crystal Structure Of T4-Bacteriophage Deoxycytidyla 4e-06
2hvv_A184 Crystal Structure Of Dcmp Deaminase From Streptococ 4e-06
2nx8_A179 The Crystal Structure Of The Trna-Specific Adenosin 4e-05
1wwr_A171 Crystal Structure Of Trna Adenosine Deaminase Tada 5e-05
2b3j_A159 Crystal Structure Of Staphylococcus Aureus Trna Ade 1e-04
2w4l_A178 Human Dcmp Deaminase Length = 178 2e-04
>pdb|2G6V|A Chain A, The Crystal Structure Of Ribd From Escherichia Coli Length = 402 Back     alignment and structure 
Iteration: 1

 Score =  175 bits (444), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 81/177 (45%), Positives = 115/177 (64%), Gaps = 3/177 (1%)
Query: 12  INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
             + PNP VGCVIVK+  I+  GY +  G  HAE+ AL  A   G     +T Y+TLEPC
Sbjct: 46  FTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRXA---GEKAKGATAYVTLEPC 102
Query: 72  SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
           S+ G TPPC +ALI +G+ +V+ +  DPNP V+G+G+ +L  AGI V  GL   EA ++N
Sbjct: 103 SHHGRTPPCCDALIAAGVARVVASXQDPNPQVAGRGLYRLQQAGIDVSHGLXXSEAEQLN 162
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILT 188
            GF  R + G P++++K+ +SLD +T+  +  SQWITS ++R D  + RA+S AILT
Sbjct: 163 KGFLKRXRTGFPYIQLKLGASLDGRTAXASGESQWITSPQARRDVQLLRAQSHAILT 219
>pdb|2O7P|A Chain A, The Crystal Structure Of Ribd From Escherichia Coli In Complex With The Oxidised Nadp+ Cofactor In The Active Site Of The Reductase Domain Length = 380 Back     alignment and structure
>pdb|2B3Z|A Chain A, Crystal Structure Of A Bifunctional Deaminase And Reductase Involved In Riboflavin Biosynthesis Length = 373 Back     alignment and structure
>pdb|2HXV|A Chain A, Crystal Structure Of A Diaminohydroxyphosphoribosylaminopyrimidine Deaminase 5-Amino-6-(5-Phosphoribosylamino)uracil Reductase (Tm1828) From Thermotoga Maritima At 1.80 A Resolution Length = 360 Back     alignment and structure
>pdb|1Z3A|A Chain A, Crystal Structure Of Trna Adenosine Deaminase Tada From Escherichia Coli Length = 168 Back     alignment and structure
>pdb|3OCQ|A Chain A, Crystal Structure Of Trna-Specific Adenosine Deaminase From Salmonella Enterica Length = 183 Back     alignment and structure
>pdb|1VQ2|A Chain A, Crystal Structure Of T4-Bacteriophage Deoxycytidylate Deaminase, Mutant R115e Length = 193 Back     alignment and structure
>pdb|2HVV|A Chain A, Crystal Structure Of Dcmp Deaminase From Streptococcus Mutans Length = 184 Back     alignment and structure
>pdb|2NX8|A Chain A, The Crystal Structure Of The Trna-Specific Adenosine Deaminase From Streptococcus Pyogenes Length = 179 Back     alignment and structure
>pdb|1WWR|A Chain A, Crystal Structure Of Trna Adenosine Deaminase Tada From Aquifex Aeolicus Length = 171 Back     alignment and structure
>pdb|2B3J|A Chain A, Crystal Structure Of Staphylococcus Aureus Trna Adenosine Deaminase, Tada, In Complex With Rna Length = 159 Back     alignment and structure
>pdb|2W4L|A Chain A, Human Dcmp Deaminase Length = 178 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query192
2g6v_A 402 Riboflavin biosynthesis protein RIBD; RIBD APO str 1e-104
2b3z_A 373 Riboflavin biosynthesis protein RIBD; alpha/beta/a 1e-104
2hxv_A 360 Diaminohydroxyphosphoribosylaminopyrimidine deami 1e-102
2hvw_A184 Deoxycytidylate deaminase; 3-layer (alpha-beta)-sa 5e-24
1p6o_A161 Cytosine deaminase; hydrolase, dimer, inhibitor bo 3e-20
2azn_A 219 HTP reductase, putative 5-amino-6-(5-phosphoribosy 6e-19
2w4l_A178 DCMP deaminse, deoxycytidylate deaminase; pyrimidi 8e-19
1wkq_A164 Guanine deaminase; domain SWAP, the cytidine deami 1e-17
2p4g_A 270 Hypothetical protein; pyrimidine reductase-like pr 2e-17
1z3a_A168 TRNA-specific adenosine deaminase; tRNA adenosine 5e-17
1wwr_A171 TRNA adenosine deaminase TADA; homodimer, riken st 5e-17
2nx8_A179 TRNA-specific adenosine deaminase; TAD, hydrolase; 6e-17
2b3j_A159 TRNA adenosine deaminase; mixed alpha-beta, protei 7e-17
2a8n_A144 Cytidine and deoxycytidylate deaminase; RNA editin 1e-16
3dh1_A189 TRNA-specific adenosine deaminase 2; zinc-binding 3e-16
2g84_A197 Cytidine and deoxycytidylate deaminase zinc-bindi; 5e-16
1vq2_A193 DCMP deaminase, deoxycytidylate deaminase; hydrola 4e-13
1vq2_A193 DCMP deaminase, deoxycytidylate deaminase; hydrola 5e-05
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A* Length = 402 Back     alignment and structure
 Score =  304 bits (781), Expect = e-104
 Identities = 88/192 (45%), Positives = 127/192 (66%), Gaps = 8/192 (4%)

Query: 1   MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNA--AAQGY 57
           M  AL+ A+     + PNP VGCVIVK+  I+  GY +  G  HAE+ AL  A   A+G 
Sbjct: 34  MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKG- 92

Query: 58  DVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGIS 117
               +T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L  AGI 
Sbjct: 93  ----ATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 148

Query: 118 VKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSH 177
           V  GLM  EA ++N GF  RM+ G P++++K+ +SLD +T++ +  SQWITS ++R D  
Sbjct: 149 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 208

Query: 178 IWRARSCAILTG 189
           + RA+S AILT 
Sbjct: 209 LLRAQSHAILTS 220
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A* Length = 373 Back     alignment and structure
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2 Length = 360 Back     alignment and structure
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A* Length = 184 Back     alignment and structure
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A Length = 161 Back     alignment and structure
>2azn_A HTP reductase, putative 5-amino-6-(5-phosphoribosylamino)uracil; oxidoreductase; HET: MA5 NAP EPE; 2.70A {Methanocaldococcus jannaschii} SCOP: c.71.1.2 Length = 219 Back     alignment and structure
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens} Length = 178 Back     alignment and structure
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A Length = 164 Back     alignment and structure
>2p4g_A Hypothetical protein; pyrimidine reductase-like protein, structural genomics, JOIN for structural genomics, JCSG; 2.30A {Corynebacterium diphtheriae} Length = 270 Back     alignment and structure
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A Length = 168 Back     alignment and structure
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2 Length = 171 Back     alignment and structure
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6} Length = 179 Back     alignment and structure
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2 Length = 159 Back     alignment and structure
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2 Length = 144 Back     alignment and structure
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens} Length = 189 Back     alignment and structure
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2 Length = 197 Back     alignment and structure
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2 Length = 193 Back     alignment and structure
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2 Length = 193 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query192
2hxv_A 360 Diaminohydroxyphosphoribosylaminopyrimidine deami 100.0
2b3z_A 373 Riboflavin biosynthesis protein RIBD; alpha/beta/a 100.0
2g6v_A 402 Riboflavin biosynthesis protein RIBD; RIBD APO str 100.0
3dh1_A189 TRNA-specific adenosine deaminase 2; zinc-binding 100.0
2nx8_A179 TRNA-specific adenosine deaminase; TAD, hydrolase; 100.0
2b3j_A159 TRNA adenosine deaminase; mixed alpha-beta, protei 100.0
1z3a_A168 TRNA-specific adenosine deaminase; tRNA adenosine 100.0
2g84_A197 Cytidine and deoxycytidylate deaminase zinc-bindi; 100.0
1wwr_A171 TRNA adenosine deaminase TADA; homodimer, riken st 100.0
2a8n_A144 Cytidine and deoxycytidylate deaminase; RNA editin 100.0
1wkq_A164 Guanine deaminase; domain SWAP, the cytidine deami 100.0
1p6o_A161 Cytosine deaminase; hydrolase, dimer, inhibitor bo 100.0
1vq2_A193 DCMP deaminase, deoxycytidylate deaminase; hydrola 99.98
2w4l_A178 DCMP deaminse, deoxycytidylate deaminase; pyrimidi 99.98
2hvw_A184 Deoxycytidylate deaminase; 3-layer (alpha-beta)-sa 99.97
3g8q_A 278 Predicted RNA-binding protein, contains thump doma 99.94
2nyt_A190 Probable C->U-editing enzyme apobec-2; cytidine de 99.91
1uwz_A136 Cytidine deaminase; CDD, tetramer, zinc binding, p 99.45
2p4g_A 270 Hypothetical protein; pyrimidine reductase-like pr 99.38
2fr5_A146 Cytidine deaminase; tetrahydrouridine, protein-inh 99.32
2z3g_A130 Blasticidin-S deaminase; hydrolase, cytidine deami 99.31
3ky8_A 197 Putative riboflavin biosynthesis protein; structur 98.93
3b8f_A142 Putative blasticidin S deaminase; cytidine deamina 98.81
1r5t_A142 Cytidine deaminase; zinc dependent deaminase, RNA 98.74
3r2n_A138 Cytidine deaminase; structural genomics, seattle s 98.66
2d30_A141 Cytidine deaminase; purines, pyrimidines, nucleosi 98.64
3mpz_A150 Cytidine deaminase; ssgcid, structu genomics, seat 98.21
1ctt_A294 Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Es 98.13
1ctt_A294 Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Es 98.05
3dmo_A138 Cytidine deaminase; structural genomics, seattle s 97.76
3oj6_A158 Blasticidin-S deaminase; ssgcid, seattle structura 97.49
4eg2_A298 Cytidine deaminase; UMP synthesis, Zn binding, hyd 96.57
4eg2_A298 Cytidine deaminase; UMP synthesis, Zn binding, hyd 95.76
3v4k_A203 DNA DC->DU-editing enzyme apobec-3G; antiviral def 94.09
3vow_A190 Probable DNA DC->DU-editing enzyme apobec-3C; anti 93.98
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2 Back     alignment and structure
Probab=100.00  E-value=1.4e-62  Score=428.48  Aligned_cols=189  Identities=41%  Similarity=0.644  Sum_probs=183.2

Q ss_pred             CHHHHHHHhhc-ccCCCCCeEEEEEEeCCeEEEEeecCCCCCccHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCChh
Q psy8195           1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPP   79 (192)
Q Consensus         1 M~~Ai~~A~~~-~~~~~~p~vGaviv~~g~ii~~g~n~~~~~~HAE~~ai~~a~~~~~~~~~~tlYvTlEPC~~~g~tp~   79 (192)
                      |++||++|+++ ..+.|||+||||||+||+||++|+|...++.|||++||+++++.+..++|||||||||||+|+|||||
T Consensus        18 m~~al~lA~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~~~~~HAE~~Ai~~a~~~~~~~~g~tlYvTlEPC~h~g~t~~   97 (360)
T 2hxv_A           18 MKRAIELAKKGLGRVNPNPPVGAVVVKDGRIIAEGFHPYFGGPHAERMAIESARKKGEDLRGATLIVTLEPCDHHGKTPP   97 (360)
T ss_dssp             HHHHHHHHHTTTTTSTTSCCCEEEEEETTEEEEEEECCSTTSCCHHHHHHHHHHHTTCCCTTCEEEEEECCCCSCSSSCC
T ss_pred             HHHHHHHHHHhccccCCCCCEEEEEEECCEEEEEEeCCCCCCcCHHHHHHHHHHhcCCCcCCcEEEEecCcccccCCCHH
Confidence            89999999999 67789999999999999999999999999999999999999877788999999999999999999999


Q ss_pred             hHHHHHHcCCCEEEEEeeCCCCCCcchhHHhhhhCCCeeeeccchHHHHhhccccccccccCCceeeeeecccCCCcccc
Q psy8195          80 CTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSL  159 (192)
Q Consensus        80 C~~ai~~~gI~rvv~~~~dp~~~~~g~g~~~l~~~gi~v~~g~l~~e~~~l~~~f~~~~~~~rP~v~~K~A~SlDG~ia~  159 (192)
                      |+++|+++||+||||+..||++ +.|.|++.|+++||+|..|++++||.++++.||.+.+.++|||++|+|+|+||+|+.
T Consensus        98 C~~ai~~agi~rVv~~~~d~~~-~~g~g~~~l~~~gi~v~~g~l~~e~~~l~~~f~~~~~~~rP~V~lk~A~SLDG~IA~  176 (360)
T 2hxv_A           98 CTDLIIESGIKTVVIGTRDPNP-VSGNGVEKFRNHGIEVIEGVLEEEVKKLCEFFITYVTKKRPFVALKYASTLDGKIAD  176 (360)
T ss_dssp             HHHHHHHHTCCEEEEEECCCCG-GGCCHHHHHHTTTCEEEECTTHHHHHHHTHHHHHHHHHSSCEEEEEEEEETTSEEEC
T ss_pred             HHHHHHHhCCCEEEEEecCchh-hhhhHHHHHHhCCcEEEECCccccchhccceeeeccccchhhheeehhhccCCcccC
Confidence            9999999999999999999999 889999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccccCCHHHHHHHHHHHhhcCeEEEccC
Q psy8195         160 YNNSSQWITSKESRNDSHIWRARSCAILTGKN  191 (192)
Q Consensus       160 ~~g~s~~it~~~sr~~~h~lR~~~daIlvG~~  191 (192)
                      ++|.+.||| ++++.++|+||+.+|+||+|.+
T Consensus       177 ~~G~s~Wit-~~~~~~~~~lr~~~DAILvG~~  207 (360)
T 2hxv_A          177 HRGDSKWIT-DKLRFKVHEMRNIYSAVLVGAG  207 (360)
T ss_dssp             TTSCCTTSC-STTHHHHHHHHHHSSEEEEEHH
T ss_pred             CCCCcccCC-HHHHHHHHHHHHHCCEEEECcc
Confidence            999999999 9999999999999999999975
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A* Back     alignment and structure
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A* Back     alignment and structure
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens} Back     alignment and structure
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6} Back     alignment and structure
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2 Back     alignment and structure
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A Back     alignment and structure
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2 Back     alignment and structure
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2 Back     alignment and structure
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2 Back     alignment and structure
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A Back     alignment and structure
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A Back     alignment and structure
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2 Back     alignment and structure
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens} Back     alignment and structure
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A* Back     alignment and structure
>3g8q_A Predicted RNA-binding protein, contains thump domain; cytidine deaminase, ferredoxin-like domain; 2.40A {Methanopyrus kandleri} Back     alignment and structure
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A Back     alignment and structure
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A* Back     alignment and structure
>2p4g_A Hypothetical protein; pyrimidine reductase-like protein, structural genomics, JOIN for structural genomics, JCSG; 2.30A {Corynebacterium diphtheriae} Back     alignment and structure
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A* Back     alignment and structure
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A* Back     alignment and structure
>3ky8_A Putative riboflavin biosynthesis protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE UNL; 2.12A {Shewanella loihica} Back     alignment and structure
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis} Back     alignment and structure
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1 Back     alignment and structure
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0 Back     alignment and structure
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1 Back     alignment and structure
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A Back     alignment and structure
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A* Back     alignment and structure
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A* Back     alignment and structure
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei} Back     alignment and structure
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis} Back     alignment and structure
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae} Back     alignment and structure
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae} Back     alignment and structure
>3v4k_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrola metal-binding, nucleus; HET: DNA; 1.38A {Homo sapiens} PDB: 3v4j_A* 3ir2_A* 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A* Back     alignment and structure
>3vow_A Probable DNA DC->DU-editing enzyme apobec-3C; antiviral deffense, HOST-virus interaction, metal- HIV-1 VIF, BET, single domain, sivagm, hydrolase; 2.15A {Homo sapiens} PDB: 3vm8_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 192
d2b3za2145 c.97.1.2 (A:1-145) Riboflavin biosynthesis protein 5e-30
d2hxva2147 c.97.1.2 (A:1-147) Riboflavin biosynthesis protein 2e-27
d1z3aa1156 c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA 2e-21
d1wwra1151 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA { 3e-20
d2b3ja1151 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA { 3e-19
d1p6oa_156 c.97.1.2 (A:) Cytosine deaminase {Baker's yeast (S 3e-18
d2g84a1189 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitr 4e-18
d1vq2a_193 c.97.1.2 (A:) Deoxycytidylate deaminase {Bacteriop 9e-18
d1wkqa_158 c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus sub 2e-16
d2a8na1130 c.97.1.2 (A:2-131) Cytidine and deoxycytidylate de 3e-14
d2b3za1 214 c.71.1.2 (A:146-359) Riboflavin biosynthesis prote 7e-13
d2hxva1 198 c.71.1.2 (A:148-345) Riboflavin biosynthesis prote 6e-11
d2azna1 219 c.71.1.2 (A:6-224) HTP reductase {Methanococcus ja 1e-10
>d2b3za2 c.97.1.2 (A:1-145) Riboflavin biosynthesis protein RibD {Bacillus subtilis [TaxId: 1423]} Length = 145 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: Riboflavin biosynthesis protein RibD
species: Bacillus subtilis [TaxId: 1423]

 Score =  105 bits (263), Expect = 5e-30
 Identities = 60/143 (41%), Positives = 88/143 (61%), Gaps = 4/143 (2%)

Query: 1   MTLALQQAKLSINS-SPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
           M LAL  AK        NP VG V+VK+ +I+  G     G  HAE+ A+  A   G   
Sbjct: 6   MKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMA---GAHA 62

Query: 60  YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
             + +Y+TLEPCS++G TPPC E +I SGIK+V +A+ DPNPLV+G+G++ +  AGI V+
Sbjct: 63  EGADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAGIEVR 122

Query: 120 QGLMQKEAYEINIGFFSRMQRGI 142
           +G++  +A  +N  F   M+ G+
Sbjct: 123 EGILADQAERLNEKFLHFMRTGL 145
>d2hxva2 c.97.1.2 (A:1-147) Riboflavin biosynthesis protein RibD {Thermotoga maritima [TaxId: 2336]} Length = 147 Back     information, alignment and structure
>d1z3aa1 c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA {Escherichia coli [TaxId: 562]} Length = 156 Back     information, alignment and structure
>d1wwra1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Aquifex aeolicus [TaxId: 63363]} Length = 151 Back     information, alignment and structure
>d2b3ja1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Staphylococcus aureus [TaxId: 1280]} Length = 151 Back     information, alignment and structure
>d1p6oa_ c.97.1.2 (A:) Cytosine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 156 Back     information, alignment and structure
>d2g84a1 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitrosomonas europaea [TaxId: 915]} Length = 189 Back     information, alignment and structure
>d1vq2a_ c.97.1.2 (A:) Deoxycytidylate deaminase {Bacteriophage T4 [TaxId: 10665]} Length = 193 Back     information, alignment and structure
>d1wkqa_ c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus subtilis [TaxId: 1423]} Length = 158 Back     information, alignment and structure
>d2a8na1 c.97.1.2 (A:2-131) Cytidine and deoxycytidylate deaminase CodA {Agrobacterium tumefaciens [TaxId: 358]} Length = 130 Back     information, alignment and structure
>d2b3za1 c.71.1.2 (A:146-359) Riboflavin biosynthesis protein RibD {Bacillus subtilis [TaxId: 1423]} Length = 214 Back     information, alignment and structure
>d2hxva1 c.71.1.2 (A:148-345) Riboflavin biosynthesis protein RibD {Thermotoga maritima [TaxId: 2336]} Length = 198 Back     information, alignment and structure
>d2azna1 c.71.1.2 (A:6-224) HTP reductase {Methanococcus jannaschii [TaxId: 2190]} Length = 219 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query192
d2hxva2147 Riboflavin biosynthesis protein RibD {Thermotoga m 100.0
d2b3za2145 Riboflavin biosynthesis protein RibD {Bacillus sub 100.0
d1z3aa1156 tRNA adenosine deaminase TadA {Escherichia coli [T 100.0
d2b3ja1151 tRNA adenosine deaminase TadA {Staphylococcus aure 100.0
d1wwra1151 tRNA adenosine deaminase TadA {Aquifex aeolicus [T 100.0
d1p6oa_156 Cytosine deaminase {Baker's yeast (Saccharomyces c 100.0
d2g84a1189 Putative deaminase NE0047 {Nitrosomonas europaea [ 100.0
d1wkqa_158 Guanine deaminase GuaD {Bacillus subtilis [TaxId: 100.0
d2a8na1130 Cytidine and deoxycytidylate deaminase CodA {Agrob 100.0
d1vq2a_193 Deoxycytidylate deaminase {Bacteriophage T4 [TaxId 99.97
d1alna2144 Two-domain cytidine deaminase {Escherichia coli [T 98.35
d1r5ta_141 mono-domain cytidine deaminase {Baker's yeast (Sac 98.05
d2fr5a1136 mono-domain cytidine deaminase {Mouse (Mus musculu 97.91
d2d30a1124 mono-domain cytidine deaminase {Bacillus anthracis 97.89
d1uwza_130 mono-domain cytidine deaminase {Bacillus subtilis 97.86
d1alna1150 Two-domain cytidine deaminase {Escherichia coli [T 97.25
d2z3ga1123 Blasticidin-S deaminase {Aspergillus terreus [TaxI 97.14
>d2hxva2 c.97.1.2 (A:1-147) Riboflavin biosynthesis protein RibD {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: Riboflavin biosynthesis protein RibD
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=8e-47  Score=289.79  Aligned_cols=141  Identities=42%  Similarity=0.682  Sum_probs=133.4

Q ss_pred             CHHHHHHHhhc-ccCCCCCeEEEEEEeCCeEEEEeecCCCCCccHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCChh
Q psy8195           1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPP   79 (192)
Q Consensus         1 M~~Ai~~A~~~-~~~~~~p~vGaviv~~g~ii~~g~n~~~~~~HAE~~ai~~a~~~~~~~~~~tlYvTlEPC~~~g~tp~   79 (192)
                      |++||++|+++ ..+.++|+||||||+||+||+.|+|...+++|||++|++++.+.+.+++|+|||||||||.+.|+|||
T Consensus         6 M~~Al~~A~~~~~~~~~~~pVGaViV~~g~IIa~g~n~~~~~~hae~~ai~~a~~~~~~l~~~~lYvTlEPC~~~~~~p~   85 (147)
T d2hxva2           6 MKRAIELAKKGLGRVNPNPPVGAVVVKDGRIIAEGFHPYFGGPHAERMAIESARKKGEDLRGATLIVTLEPCDHHGKTPP   85 (147)
T ss_dssp             HHHHHHHHHTTTTTSTTSCCCEEEEEETTEEEEEEECCSTTSCCHHHHHHHHHHHTTCCCTTCEEEEEECCCCSCSSSCC
T ss_pred             HHHHHHHHHhccccCCCCCcEEEEEEECCeEEEeeceeccCCchHHHHHHHHHHHhCCCCCCCEEeeccccccccCCChh
Confidence            89999999999 66789999999999999999999999999999999999999988889999999999999999999999


Q ss_pred             hHHHHHHcCCCEEEEEeeCCCCCCcchhHHhhhhCCCeeeeccchHHHHhhccccccccccCC
Q psy8195          80 CTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIGFFSRMQRGI  142 (192)
Q Consensus        80 C~~ai~~~gI~rvv~~~~dp~~~~~g~g~~~l~~~gi~v~~g~l~~e~~~l~~~f~~~~~~~r  142 (192)
                      |+++|+|+||+|||||..||++ ..+.+++.|+++||+|..|+|++||.+|++.||++.+++|
T Consensus        86 C~~ai~~agi~rVv~g~~dp~~-~~~~~~~~l~~~~i~V~~gvl~~e~~~l~~~F~~~~~~kr  147 (147)
T d2hxva2          86 CTDLIIESGIKTVVIGTRDPNP-VSGNGVEKFRNHGIEVIEGVLEEEVKKLCEFFITYVTKKR  147 (147)
T ss_dssp             HHHHHHHHTCCEEEEEECCCCG-GGCCHHHHHHTTTCEEEECTTHHHHHHHTHHHHHHHHHSS
T ss_pred             hhHHHHhcCcceeeeecccccc-ccchhhhhhhcCCCEEEeCcCHHHHHHHHHHHHHHHHhCc
Confidence            9999999999999999999997 4677999999999999999999999999999998877654
>d2b3za2 c.97.1.2 (A:1-145) Riboflavin biosynthesis protein RibD {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1z3aa1 c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2b3ja1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1wwra1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1p6oa_ c.97.1.2 (A:) Cytosine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2g84a1 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitrosomonas europaea [TaxId: 915]} Back     information, alignment and structure
>d1wkqa_ c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2a8na1 c.97.1.2 (A:2-131) Cytidine and deoxycytidylate deaminase CodA {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1vq2a_ c.97.1.2 (A:) Deoxycytidylate deaminase {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1alna2 c.97.1.1 (A:151-294) Two-domain cytidine deaminase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r5ta_ c.97.1.1 (A:) mono-domain cytidine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fr5a1 c.97.1.1 (A:11-146) mono-domain cytidine deaminase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2d30a1 c.97.1.1 (A:1-124) mono-domain cytidine deaminase {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1uwza_ c.97.1.1 (A:) mono-domain cytidine deaminase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1alna1 c.97.1.1 (A:1-150) Two-domain cytidine deaminase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2z3ga1 c.97.1.1 (A:2-124) Blasticidin-S deaminase {Aspergillus terreus [TaxId: 33178]} Back     information, alignment and structure