Psyllid ID: psy8249

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230--
Protein Sequence
MSVSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYTIFGKVIDGLETLDNLEKLPVNPN
Secondary Structure (PSIPRED)
cEEEEEEccccEEEEEEcccccHHHHHHHHHHHcccccccEEEEcccccccEEEccccccccEEEEcccccHHHHHHHHHHHHcccccccccEEEccccEEEcccccccccccccccccccccccccccccccccEEEEcccccccccccEEEEccccccccccccEEEEEEccHHHHHHHHcccccccccccccEEEEEEEEEcccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEccEEEEEEEcccccHHHHHHHHHHHHccccccEEEEEEEcccEEEEcccEccEEEEEEEcccccHHHHHHHHHHHHccccccEEEEEEEcccEEEEcccccccccccEccEccEccccccccccccccEEEEcccccccEcccEEEEccccHHHcccccEEEEEEEcHHHHHHHHcccEcccccEcccEEEEEEEEEEEEEEEEccccccccccccccccccccc
Coil and Loop (DISEMBL)
msvslhtdvgdikIELFCEDCPKTCENFLALCASdyyngcifhrNIKGfivqtgdpthtgdikielfcEDCPKTCENFLALCASdyyngcifhrNIKGfivqtgdpthtgkggnsiwgkkFEDEFKETLKHSERGIVSmanngpntnasQFFITYAAHAHLDLKYTIFGKVIdgfetldnleklpvnpnhkpiFFITYAAHAHLDLKYTIFGKVIdgletldnleklpvnpn
Flexible Loop (DISEMBL)
msvslhtdvgdikiELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPthtgkggnsiwgkKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYTIFGKVIDGLetldnleklpvnpn
Low Complexity Region (SEG)
MSVSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYTIFGKVIDGLETLDNLEKLPVNPN
Disordered region (IsUnstruct)
******TDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFE************************NASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYTIFGKVIDGLETLDN*********
Disordered Region (DISOPRED)
*SVSLHTDVGDIKIELFCEDCPKTCENFLAL******************IVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYTIFGKVIDGLETLDNL********
Disordered Region (DISEMBL)
********VGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYTIFGKVIDGLETLDNLEKLPVNPN
Disordered Region (DISPRO)
*SVSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYTIFGKVI**LETLDNLEKL*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSVSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYTIFGKVIDGLETLDNLEKLPVNPN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	232	2.2.26 [Sep-21-2011]
Q9H2H8	161	Peptidyl-prolyl cis-trans	yes	N/A	0.590	0.850	0.782	3e-60
Q5ZLV2	161	Peptidyl-prolyl cis-trans	yes	N/A	0.590	0.850	0.789	3e-60
Q812D3	161	Peptidyl-prolyl cis-trans	yes	N/A	0.590	0.850	0.768	1e-59
Q9D6L8	161	Peptidyl-prolyl cis-trans	yes	N/A	0.590	0.850	0.760	4e-59
P52017	161	Peptidyl-prolyl cis-trans	yes	N/A	0.590	0.850	0.715	4e-56
P0CP86	167	Peptidyl-prolyl cis-trans	yes	N/A	0.590	0.820	0.664	6e-53
P0CP87	167	Peptidyl-prolyl cis-trans	N/A	N/A	0.590	0.820	0.664	6e-53
P0C1I5	170	Peptidyl-prolyl cis-trans	N/A	N/A	0.642	0.876	0.551	8e-53
Q54E95	161	Peptidyl-prolyl cis-trans	yes	N/A	0.590	0.850	0.620	3e-47
Q4PCH8	168	Peptidyl-prolyl cis-trans	N/A	N/A	0.586	0.809	0.597	6e-44

>sp|Q9H2H8|PPIL3_HUMAN Peptidyl-prolyl cis-trans isomerase-like 3 OS=Homo sapiens GN=PPIL3 PE=1 SV=1

 Score =  231 bits (589), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 108/138 (78%), Positives = 120/138 (86%), Gaps = 1/138 (0%)

Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T  GDIKIE+FCE  PKTCENFLALCAS+YYNGCIFHRNIKGF+VQTGDPT TG+GGNSI
Sbjct: 7   TDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRGGNSI 66

Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
           WGKKFEDE+ E LKH+ RG+VSMANNGPNTN SQFFITY    HLD+KYT+FGKVIDG E
Sbjct: 67  WGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLE 126

Query: 177 TLDNLEKLPVN-PNHKPI 193
           TLD LEKLPVN   ++P+
Sbjct: 127 TLDELEKLPVNEKTYRPL 144

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. May be involved in pre-mRNA splicing.
Homo sapiens (taxid: 9606)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

>sp|Q5ZLV2|PPIL3_CHICK Peptidyl-prolyl cis-trans isomerase-like 3 OS=Gallus gallus GN=PPIL3 PE=2 SV=1

 Score =  231 bits (589), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 109/138 (78%), Positives = 118/138 (85%), Gaps = 1/138 (0%)

Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T  GDIKIELFCE  PKTCENFLALCAS+YYNGC+FHRNIKGF+VQTGDP  TGKGG SI
Sbjct: 7   TDVGDIKIELFCERTPKTCENFLALCASNYYNGCVFHRNIKGFMVQTGDPLGTGKGGTSI 66

Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
           WGKKFEDEF E LKHS RG+VSMANNGPNTN SQFFITY    HLD+KYT+FGKVIDG E
Sbjct: 67  WGKKFEDEFSEYLKHSVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLE 126

Query: 177 TLDNLEKLPVN-PNHKPI 193
           TLD LEKLPVN   ++P+
Sbjct: 127 TLDELEKLPVNEKTYRPL 144

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Gallus gallus (taxid: 9031)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q812D3|PPIL3_RAT Peptidyl-prolyl cis-trans isomerase-like 3 OS=Rattus norvegicus GN=Ppil3 PE=2 SV=1

 Score =  229 bits (584), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 106/138 (76%), Positives = 120/138 (86%), Gaps = 1/138 (0%)

Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T  GDIKIE+FCE  PKTCENFLALCAS+YYNGC+FHRNIKGF+VQTGDPT TG+GG+SI
Sbjct: 7   TDVGDIKIEVFCERTPKTCENFLALCASNYYNGCVFHRNIKGFMVQTGDPTGTGRGGSSI 66

Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
           WGKKFEDE+ E LKH+ RG+VSMANNGPNTN SQFFITY    HLD+KYT+FGKVIDG E
Sbjct: 67  WGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLE 126

Query: 177 TLDNLEKLPVN-PNHKPI 193
           TLD LEKLPVN   ++P+
Sbjct: 127 TLDELEKLPVNEKTYRPL 144

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. May be involved in pre-mRNA splicing.

Rattus norvegicus (taxid: 10116)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9D6L8|PPIL3_MOUSE Peptidyl-prolyl cis-trans isomerase-like 3 OS=Mus musculus GN=Ppil3 PE=2 SV=1

 Score =  227 bits (579), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 105/138 (76%), Positives = 119/138 (86%), Gaps = 1/138 (0%)

Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T  GDIKIE+FCE  PKTCENFLALCAS+YYNGC+FHRNIKGF+VQTGDPT TG+GG+SI
Sbjct: 7   TDVGDIKIEVFCERTPKTCENFLALCASNYYNGCVFHRNIKGFMVQTGDPTGTGRGGSSI 66

Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
           W KKFEDE+ E LKH+ RG+VSMANNGPNTN SQFFITY    HLD+KYT+FGKVIDG E
Sbjct: 67  WAKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLE 126

Query: 177 TLDNLEKLPVN-PNHKPI 193
           TLD LEKLPVN   ++P+
Sbjct: 127 TLDELEKLPVNEKTYRPL 144

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. May be involved in pre-mRNA splicing.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P52017|CYP10_CAEEL Peptidyl-prolyl cis-trans isomerase 10 OS=Caenorhabditis elegans GN=cyn-10 PE=2 SV=2

 Score =  218 bits (554), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 98/137 (71%), Positives = 115/137 (83%)

Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T +GDIKIEL+ +D PK CENFLALCASDYYNGCIFHRNIK F+VQTGDPTH+GKGG SI
Sbjct: 7   TTSGDIKIELYVDDAPKACENFLALCASDYYNGCIFHRNIKDFMVQTGDPTHSGKGGESI 66

Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
           WG  FEDEF   LKH  RG VSMANNGP++N SQFFITYA  AHLD+KYT+FGKVIDGF+
Sbjct: 67  WGGPFEDEFVSALKHDSRGCVSMANNGPDSNRSQFFITYAKQAHLDMKYTLFGKVIDGFD 126

Query: 177 TLDNLEKLPVNPNHKPI 193
           TL+ +E + V+  ++P+
Sbjct: 127 TLEEIETIKVDNKYRPL 143

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Caenorhabditis elegans (taxid: 6239)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P0CP86|PPIL3_CRYNJ Peptidyl-prolyl cis-trans isomerase-like 3 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CYP10 PE=3 SV=1

 Score =  207 bits (526), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 91/137 (66%), Positives = 111/137 (81%)

Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T+ GDIKIELFCE  P+T ENFLALCAS  Y+G +FHRNI+GF++Q GDPT TGKGG SI
Sbjct: 7   TNLGDIKIELFCESVPRTAENFLALCASGQYDGTLFHRNIRGFMIQGGDPTGTGKGGQSI 66

Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
           WG+ F DE ++TL+ + RG+V+MAN GP+TN SQFFITYA    LD KY+IFGKVIDG E
Sbjct: 67  WGRPFSDEIRQTLRFNNRGMVAMANAGPDTNKSQFFITYAKQPSLDGKYSIFGKVIDGME 126

Query: 177 TLDNLEKLPVNPNHKPI 193
           TLD++EK PVNP  +P+
Sbjct: 127 TLDSMEKTPVNPKSRPL 143

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P0CP87|PPIL3_CRYNB Peptidyl-prolyl cis-trans isomerase-like 3 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=CYP10 PE=3 SV=1

 Score =  207 bits (526), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 91/137 (66%), Positives = 111/137 (81%)

Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T+ GDIKIELFCE  P+T ENFLALCAS  Y+G +FHRNI+GF++Q GDPT TGKGG SI
Sbjct: 7   TNLGDIKIELFCESVPRTAENFLALCASGQYDGTLFHRNIRGFMIQGGDPTGTGKGGQSI 66

Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
           WG+ F DE ++TL+ + RG+V+MAN GP+TN SQFFITYA    LD KY+IFGKVIDG E
Sbjct: 67  WGRPFSDEIRQTLRFNNRGMVAMANAGPDTNKSQFFITYAKQPSLDGKYSIFGKVIDGME 126

Query: 177 TLDNLEKLPVNPNHKPI 193
           TLD++EK PVNP  +P+
Sbjct: 127 TLDSMEKTPVNPKSRPL 143

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P0C1I5|PPIL3_RHIO9 Peptidyl-prolyl cis-trans isomerase-like 3 OS=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) GN=cyp4 PE=3 SV=1

 Score =  206 bits (525), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 107/194 (55%), Positives = 124/194 (63%), Gaps = 45/194 (23%)

Query: 1   MSVSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTG 60
           MSV+LHTD+GDIKIE+FCE  PKT ENFLALCAS YY+   FHRNI GF++Q  +  HTG
Sbjct: 1   MSVTLHTDLGDIKIEVFCEAVPKTAENFLALCASGYYDNNTFHRNIPGFMIQVHEHLHTG 60

Query: 61  DIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKK 120
                                                       DPT TGKGGNSIWGKK
Sbjct: 61  --------------------------------------------DPTGTGKGGNSIWGKK 76

Query: 121 FEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE-TLD 179
           F DE + TLKH+ RGIVSMAN+GPNTN SQFFITYA H HLD KYT+FGKVIDG + TLD
Sbjct: 77  FNDEIRSTLKHNSRGIVSMANSGPNTNGSQFFITYAKHPHLDTKYTVFGKVIDGADSTLD 136

Query: 180 NLEKLPVNPNHKPI 193
            +EK+PV+  H+P+
Sbjct: 137 MMEKVPVDEKHRPL 150

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) (taxid: 246409)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q54E95|PPIL3_DICDI Peptidyl-prolyl cis-trans isomerase-like 3 OS=Dictyostelium discoideum GN=ppil3 PE=3 SV=1

 Score =  188 bits (478), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 85/137 (62%), Positives = 106/137 (77%)

Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T  GDIK+E+FC+  P   ENFLALCAS+YYN  IFHRNIKGF++Q GDPT+TG+GG SI
Sbjct: 7   TSLGDIKVEIFCDSVPLASENFLALCASNYYNNTIFHRNIKGFMIQGGDPTNTGRGGESI 66

Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
           W K+F+DEF   LKH+ RGI+SMAN+GP+TN SQFFITY  H  L+  YT+FGK+I G E
Sbjct: 67  WKKQFKDEFPSHLKHNTRGILSMANSGPDTNGSQFFITYGKHRSLNKVYTVFGKIIAGIE 126

Query: 177 TLDNLEKLPVNPNHKPI 193
            LD +EK+PV+    P+
Sbjct: 127 VLDLMEKVPVDDKDLPL 143

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Dictyostelium discoideum (taxid: 44689)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q4PCH8|PPIL3_USTMA Peptidyl-prolyl cis-trans isomerase-like 3 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=CYP10 PE=3 SV=1

 Score =  177 bits (449), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 83/139 (59%), Positives = 101/139 (72%), Gaps = 3/139 (2%)

Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T+ GDIK+E+FC+  P+  ENFL  CA+  YN   +HRNIK F++QTGDPT TGKGG SI
Sbjct: 7   TNVGDIKVEVFCDATPRAAENFLGHCAAGTYNDVKWHRNIKSFMIQTGDPTGTGKGGQSI 66

Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
           WGK F DE + +LK   RGIV+ AN GP+TN SQFFITYA   HLD KYTI GKVIDG E
Sbjct: 67  WGKPFADEIRSSLKFDRRGIVACANAGPDTNKSQFFITYAKQPHLDGKYTIIGKVIDGAE 126

Query: 177 ---TLDNLEKLPVNPNHKP 192
              TLD +E +PV+  ++P
Sbjct: 127 DGGTLDAMEAIPVDAKNRP 145

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
242247236	161	cyclophilin-10-like [Acyrthosiphon pisum	0.590	0.850	0.826	2e-62
157107329	161	cyclophilin-10 [Aedes aegypti] gi|108879	0.590	0.850	0.826	4e-62
91077922	172	PREDICTED: similar to AGAP009996-PA [Tri	0.590	0.796	0.826	5e-61
340711065	161	PREDICTED: peptidyl-prolyl cis-trans iso	0.590	0.850	0.804	1e-60
357619503	161	putative cyclophilin-10 [Danaus plexippu	0.590	0.850	0.804	2e-60
390464717	328	PREDICTED: peptidyl-prolyl cis-trans iso	0.590	0.417	0.789	3e-60
345493781	161	PREDICTED: peptidyl-prolyl cis-trans iso	0.590	0.850	0.811	5e-60
307176780	161	Peptidyl-prolyl cis-trans isomerase-like	0.590	0.850	0.804	8e-60
350405564	161	PREDICTED: peptidyl-prolyl cis-trans iso	0.590	0.850	0.797	9e-60
170052053	161	peptidyl-prolyl cis-trans isomerase 10 [	0.590	0.850	0.789	1e-59

>gi|242247236|ref|NP_001156057.1| cyclophilin-10-like [Acyrthosiphon pisum] gi|239791807|dbj|BAH72320.1| ACYPI000589 [Acyrthosiphon pisum]

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 114/138 (82%), Positives = 125/138 (90%), Gaps = 1/138 (0%)

Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T  GDIKIE+FCE+CPKT ENFLALCASDYYNGC+FHRNIKGFIVQTGDPTHTGKGG+SI
Sbjct: 7   TDVGDIKIEVFCEECPKTAENFLALCASDYYNGCLFHRNIKGFIVQTGDPTHTGKGGSSI 66

Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
           WG+KFEDEFKE LKH ERG VSMANNGPNTN+SQFF+TYAA  +LDLKYT+FG+VIDGFE
Sbjct: 67  WGRKFEDEFKENLKHKERGTVSMANNGPNTNSSQFFLTYAAQPNLDLKYTVFGRVIDGFE 126

Query: 177 TLDNLEKLPVNP-NHKPI 193
            LD LEKLPVN  N KP+
Sbjct: 127 ALDELEKLPVNSKNFKPL 144

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157107329|ref|XP_001649729.1| cyclophilin-10 [Aedes aegypti] gi|108879606|gb|EAT43831.1| AAEL004779-PA [Aedes aegypti]

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 114/138 (82%), Positives = 124/138 (89%), Gaps = 1/138 (0%)

Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T  GDIK+ELFCEDCPK CENFLALCASDYYNGCIFHRNIKGFIVQTGDP+ TGKGG SI
Sbjct: 7   TDVGDIKLELFCEDCPKNCENFLALCASDYYNGCIFHRNIKGFIVQTGDPSGTGKGGQSI 66

Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
           WG+K+EDEFKE LKH+ERG+VSMANNGPNTNASQFFITYAA   LDLKYT+FGKVIDGFE
Sbjct: 67  WGRKYEDEFKENLKHNERGMVSMANNGPNTNASQFFITYAAQPALDLKYTLFGKVIDGFE 126

Query: 177 TLDNLEKLPVNPN-HKPI 193
            LD LEKL VNP  ++P+
Sbjct: 127 ALDELEKLTVNPKTYRPV 144

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91077922|ref|XP_974063.1| PREDICTED: similar to AGAP009996-PA [Tribolium castaneum]

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 114/138 (82%), Positives = 123/138 (89%), Gaps = 1/138 (0%)

Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T  G+IK+ELFCE CPKTCENFLALCASDYY G +FHRNIKGFIVQTGDPT TGKGG SI
Sbjct: 17  TDLGNIKMELFCESCPKTCENFLALCASDYYTGNLFHRNIKGFIVQTGDPTGTGKGGTSI 76

Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
           W +KFEDEFKE LKH+ RGIVSMANNGPNTN SQFFITY AH HLDLKYTIFGKVIDGFE
Sbjct: 77  WERKFEDEFKEQLKHTARGIVSMANNGPNTNGSQFFITYGAHPHLDLKYTIFGKVIDGFE 136

Query: 177 TLDNLEKLPVNP-NHKPI 193
           TLD LEK+PVNP N++P+
Sbjct: 137 TLDELEKVPVNPKNYRPV 154

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340711065|ref|XP_003394102.1| PREDICTED: peptidyl-prolyl cis-trans isomerase-like 3-like [Bombus terrestris]

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 111/138 (80%), Positives = 122/138 (88%), Gaps = 1/138 (0%)

Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T  GDIKIELFCE CPKTCENFLALCASDYY+ C+FHRNIKGFIVQTGDPTHTGKGG SI
Sbjct: 7   TDVGDIKIELFCELCPKTCENFLALCASDYYDNCLFHRNIKGFIVQTGDPTHTGKGGTSI 66

Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
           W +KFEDEFKE LKH+ RG++SMANNGPNTN SQFFITY    HLDLKYT+FGKVIDG E
Sbjct: 67  WNRKFEDEFKEELKHNARGLISMANNGPNTNGSQFFITYGPQPHLDLKYTLFGKVIDGLE 126

Query: 177 TLDNLEKLPVNP-NHKPI 193
           TL+ LEKLPVNP N++P+
Sbjct: 127 TLEQLEKLPVNPKNYRPL 144

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357619503|gb|EHJ72048.1| putative cyclophilin-10 [Danaus plexippus]

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 111/138 (80%), Positives = 121/138 (87%), Gaps = 1/138 (0%)

Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T  GDIKIELFCE CPK CENFLALCASDYYNGC+FHRNIKGFIVQTGDPT TGKGG SI
Sbjct: 7   TDIGDIKIELFCEQCPKACENFLALCASDYYNGCLFHRNIKGFIVQTGDPTGTGKGGTSI 66

Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
           WGKKF+DEFKE LKH+ RG+VSMANNGPNTN SQFF TY+   HLDLKYT+FG+VIDGFE
Sbjct: 67  WGKKFDDEFKEELKHNARGMVSMANNGPNTNGSQFFFTYSEQPHLDLKYTLFGRVIDGFE 126

Query: 177 TLDNLEKLPVNPN-HKPI 193
            LD+LEK+PVNP   KP+
Sbjct: 127 ALDDLEKMPVNPKTFKPL 144

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|390464717|ref|XP_002749663.2| PREDICTED: peptidyl-prolyl cis-trans isomerase C isoform 1 [Callithrix jacchus]

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 109/138 (78%), Positives = 120/138 (86%), Gaps = 1/138 (0%)

Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T  GDIKIE+FCE  PKTCENFLALCAS+YYNGCIFHRNIKGF+VQTGDPT TG+GGNSI
Sbjct: 174 TDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRGGNSI 233

Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
           WGKKFEDE+ E LKHS RG+VSMANNGPNTN SQFFITY    HLD+KYT+FGKVIDG E
Sbjct: 234 WGKKFEDEYSEYLKHSVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLE 293

Query: 177 TLDNLEKLPVN-PNHKPI 193
           TLD LEKLPVN   ++P+
Sbjct: 294 TLDELEKLPVNEKTYRPL 311

Source: Callithrix jacchus

Species: Callithrix jacchus

Genus: Callithrix

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|345493781|ref|XP_001605618.2| PREDICTED: peptidyl-prolyl cis-trans isomerase-like 3-like isoform 1 [Nasonia vitripennis] gi|345493783|ref|XP_003427152.1| PREDICTED: peptidyl-prolyl cis-trans isomerase-like 3-like isoform 2 [Nasonia vitripennis] gi|345493785|ref|XP_003427153.1| PREDICTED: peptidyl-prolyl cis-trans isomerase-like 3-like isoform 3 [Nasonia vitripennis]

 Score =  236 bits (602), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 112/138 (81%), Positives = 120/138 (86%), Gaps = 1/138 (0%)

Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T  GDIKIELFCE CPKTCENFLALCASDYYN C FHRNIKGFIVQTGDPT TGKGG SI
Sbjct: 7   TDVGDIKIELFCELCPKTCENFLALCASDYYNNCTFHRNIKGFIVQTGDPTQTGKGGTSI 66

Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
           W +KFEDEFKE LKH+ RG+VSMANNGPNTN SQFFITYA   HLDLKYT+FG+VIDG +
Sbjct: 67  WNRKFEDEFKEELKHNARGLVSMANNGPNTNGSQFFITYAPQPHLDLKYTLFGRVIDGLD 126

Query: 177 TLDNLEKLPVNP-NHKPI 193
           TL+ LEKLPVNP N KP+
Sbjct: 127 TLEQLEKLPVNPKNFKPL 144

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307176780|gb|EFN66180.1| Peptidyl-prolyl cis-trans isomerase-like 3 [Camponotus floridanus]

 Score =  236 bits (601), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 111/138 (80%), Positives = 122/138 (88%), Gaps = 1/138 (0%)

Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T  GDIKIELFCE CPKTCENFLALCAS YY+ C+FHRNIKGFIVQTGDPT+TGKGG SI
Sbjct: 7   TDVGDIKIELFCEMCPKTCENFLALCASGYYDNCLFHRNIKGFIVQTGDPTNTGKGGTSI 66

Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
           W +KFEDEFKE LKH+ RG+VSMANNGPNTN SQFFITYA  +HLDLKYT+FGKVIDG E
Sbjct: 67  WNRKFEDEFKEELKHNARGLVSMANNGPNTNGSQFFITYAPQSHLDLKYTLFGKVIDGLE 126

Query: 177 TLDNLEKLPVNP-NHKPI 193
            L+ LEKLPVNP N+KP+
Sbjct: 127 ALEQLEKLPVNPKNYKPL 144

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350405564|ref|XP_003487479.1| PREDICTED: peptidyl-prolyl cis-trans isomerase-like 3-like [Bombus impatiens]

 Score =  235 bits (600), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 110/138 (79%), Positives = 121/138 (87%), Gaps = 1/138 (0%)

Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T  GDIKIELFCE CPK+CENFLALCASDYY+ C+FHRNIKGFIVQTGDPTH GKGG SI
Sbjct: 7   TDVGDIKIELFCELCPKSCENFLALCASDYYDNCLFHRNIKGFIVQTGDPTHIGKGGTSI 66

Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
           W +KFEDEFKE LKH+ RG+VSMANNGPNTN SQFFITY    HLDLKYT+FGKVIDG E
Sbjct: 67  WNRKFEDEFKEELKHNARGLVSMANNGPNTNGSQFFITYGPQPHLDLKYTLFGKVIDGLE 126

Query: 177 TLDNLEKLPVNP-NHKPI 193
           TL+ LEKLPVNP N++P+
Sbjct: 127 TLEQLEKLPVNPKNYRPL 144

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170052053|ref|XP_001862046.1| peptidyl-prolyl cis-trans isomerase 10 [Culex quinquefasciatus] gi|170073840|ref|XP_001870450.1| peptidyl-prolyl cis-trans isomerase cyp8 [Culex quinquefasciatus] gi|167870550|gb|EDS33933.1| peptidyl-prolyl cis-trans isomerase cyp8 [Culex quinquefasciatus] gi|167873071|gb|EDS36454.1| peptidyl-prolyl cis-trans isomerase 10 [Culex quinquefasciatus]

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 109/138 (78%), Positives = 122/138 (88%), Gaps = 1/138 (0%)

Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T  GDIK+ELFCE+CPKTCENFLALC S+YYNG IFHRNIKGFIVQTGDPT TGKGG SI
Sbjct: 7   TDVGDIKLELFCEECPKTCENFLALCGSNYYNGSIFHRNIKGFIVQTGDPTGTGKGGQSI 66

Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
           W +KFEDEF++ LKH+ERG++SMANNGPNTNASQFFITYAA   LDLKYT+FGKVIDGFE
Sbjct: 67  WARKFEDEFRDGLKHNERGMISMANNGPNTNASQFFITYAAQPALDLKYTLFGKVIDGFE 126

Query: 177 TLDNLEKLPVNPN-HKPI 193
            LD LEKL VNP  ++P+
Sbjct: 127 ALDELEKLAVNPKTYRPV 144

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
FB|FBgn0033527	161	CG11777 [Drosophila melanogast	0.586	0.844	0.781	5.7e-59
UNIPROTKB|H7BZ14	180	PPIL3 "Peptidyl-prolyl cis-tra	0.698	0.9	0.698	1.2e-58
UNIPROTKB|Q9H2H8	161	PPIL3 "Peptidyl-prolyl cis-tra	0.590	0.850	0.782	1.9e-58
UNIPROTKB|F2Z5T7	161	PPIL3 "Peptidyl-prolyl cis-tra	0.590	0.850	0.782	1.9e-58
UNIPROTKB|J9NZK4	160	PPIL3 "Peptidyl-prolyl cis-tra	0.590	0.856	0.782	1.9e-58
UNIPROTKB|Q5ZLV2	161	PPIL3 "Peptidyl-prolyl cis-tra	0.590	0.850	0.789	2.5e-58
UNIPROTKB|J9P7M4	161	J9P7M4 "Peptidyl-prolyl cis-tr	0.564	0.813	0.816	4e-58
RGD|631415	161	Ppil3 "peptidylprolyl isomeras	0.590	0.850	0.768	8.4e-58
MGI|MGI:1917475	161	Ppil3 "peptidylprolyl isomeras	0.590	0.850	0.760	3.6e-57
ZFIN|ZDB-GENE-040625-159	161	zgc:86715 "zgc:86715" [Danio r	0.564	0.813	0.786	1.6e-56

FB|FBgn0033527 CG11777 [Drosophila melanogaster (taxid:7227)]

 Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
 Identities = 107/137 (78%), Positives = 124/137 (90%)

Query:    57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
             T  GD+KIELFC+ CPK CENFLALCASDYY+GC+F RNIKGFIVQTGDPT+TGK G SI
Sbjct:     7 TDVGDLKIELFCDACPKACENFLALCASDYYSGCVFIRNIKGFIVQTGDPTNTGKNGQSI 66

Query:   117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
             WG+KF+DEFKET+KH++RG+VSMANNGPN NASQFFITYAA  +LDLKYT+FG+VIDGF+
Sbjct:    67 WGQKFDDEFKETIKHTDRGMVSMANNGPNANASQFFITYAAQPNLDLKYTLFGRVIDGFD 126

Query:   177 TLDNLEKLPVNP-NHKP 192
              LD LEKLPVNP N++P
Sbjct:   127 ALDELEKLPVNPKNYRP 143

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|H7BZ14 PPIL3 "Peptidyl-prolyl cis-trans isomerase" [Homo sapiens (taxid:9606)]

 Score = 602 (217.0 bits), Expect = 1.2e-58, P = 1.2e-58
 Identities = 116/166 (69%), Positives = 131/166 (78%)

Query:    29 LALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDYYN 88
             L L  S + NGC   R+ +   V     T  GDIKIE+FCE  PKTCENFLALCAS+YYN
Sbjct:     1 LRLHFSCFNNGCA-RRSGEAQSVTLH--TDVGDIKIEVFCERTPKTCENFLALCASNYYN 57

Query:    89 GCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNA 148
             GCIFHRNIKGF+VQTGDPT TG+GGNSIWGKKFEDE+ E LKH+ RG+VSMANNGPNTN 
Sbjct:    58 GCIFHRNIKGFMVQTGDPTGTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNG 117

Query:   149 SQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPN-HKPI 193
             SQFFITY    HLD+KYT+FGKVIDG ETLD LEKLPVN   ++P+
Sbjct:   118 SQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPL 163

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

UNIPROTKB|Q9H2H8 PPIL3 "Peptidyl-prolyl cis-trans isomerase-like 3" [Homo sapiens (taxid:9606)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 108/138 (78%), Positives = 120/138 (86%)

Query:    57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
             T  GDIKIE+FCE  PKTCENFLALCAS+YYNGCIFHRNIKGF+VQTGDPT TG+GGNSI
Sbjct:     7 TDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRGGNSI 66

Query:   117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
             WGKKFEDE+ E LKH+ RG+VSMANNGPNTN SQFFITY    HLD+KYT+FGKVIDG E
Sbjct:    67 WGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLE 126

Query:   177 TLDNLEKLPVNPN-HKPI 193
             TLD LEKLPVN   ++P+
Sbjct:   127 TLDELEKLPVNEKTYRPL 144

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F2Z5T7 PPIL3 "Peptidyl-prolyl cis-trans isomerase" [Sus scrofa (taxid:9823)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 108/138 (78%), Positives = 120/138 (86%)

Query:    57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
             T  GDIKIE+FCE  PKTCENFLALCAS+YYNGCIFHRNIKGF+VQTGDPT TG+GGNSI
Sbjct:     7 TDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRGGNSI 66

Query:   117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
             WGKKFEDE+ E LKH+ RG+VSMANNGPNTN SQFFITY    HLD+KYT+FGKVIDG E
Sbjct:    67 WGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLE 126

Query:   177 TLDNLEKLPVNPN-HKPI 193
             TLD LEKLPVN   ++P+
Sbjct:   127 TLDELEKLPVNEKTYRPL 144

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|J9NZK4 PPIL3 "Peptidyl-prolyl cis-trans isomerase" [Canis lupus familiaris (taxid:9615)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 108/138 (78%), Positives = 120/138 (86%)

Query:    57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
             T  GDIKIE+FCE  PKTCENFLALCAS+YYNGCIFHRNIKGF+VQTGDPT TG+GGNSI
Sbjct:     6 TDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRGGNSI 65

Query:   117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
             WGKKFEDE+ E LKH+ RG+VSMANNGPNTN SQFFITY    HLD+KYT+FGKVIDG E
Sbjct:    66 WGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLE 125

Query:   177 TLDNLEKLPVNPN-HKPI 193
             TLD LEKLPVN   ++P+
Sbjct:   126 TLDELEKLPVNEKTYRPL 143

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|Q5ZLV2 PPIL3 "Peptidyl-prolyl cis-trans isomerase-like 3" [Gallus gallus (taxid:9031)]

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 109/138 (78%), Positives = 118/138 (85%)

Query:    57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
             T  GDIKIELFCE  PKTCENFLALCAS+YYNGC+FHRNIKGF+VQTGDP  TGKGG SI
Sbjct:     7 TDVGDIKIELFCERTPKTCENFLALCASNYYNGCVFHRNIKGFMVQTGDPLGTGKGGTSI 66

Query:   117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
             WGKKFEDEF E LKHS RG+VSMANNGPNTN SQFFITY    HLD+KYT+FGKVIDG E
Sbjct:    67 WGKKFEDEFSEYLKHSVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLE 126

Query:   177 TLDNLEKLPVNPN-HKPI 193
             TLD LEKLPVN   ++P+
Sbjct:   127 TLDELEKLPVNEKTYRPL 144

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

UNIPROTKB|J9P7M4 J9P7M4 "Peptidyl-prolyl cis-trans isomerase" [Canis lupus familiaris (taxid:9615)]

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 107/131 (81%), Positives = 116/131 (88%)

Query:    57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
             T  GDIKIE+FCE  PKTCENFLALCAS+YYNGCIFHRNIKGF+VQTGDPT TG+GGNSI
Sbjct:     7 TDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRGGNSI 66

Query:   117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
             WGKKFEDE+ E LKH+ RG+VSMANNGPNTN SQFFITY    HLD+KYT+FGKVIDG E
Sbjct:    67 WGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLE 126

Query:   177 TLDNLEKLPVN 187
             TLD LEKLPVN
Sbjct:   127 TLDELEKLPVN 137

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

RGD|631415 Ppil3 "peptidylprolyl isomerase (cyclophilin)-like 3" [Rattus norvegicus (taxid:10116)]

 Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
 Identities = 106/138 (76%), Positives = 120/138 (86%)

Query:    57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
             T  GDIKIE+FCE  PKTCENFLALCAS+YYNGC+FHRNIKGF+VQTGDPT TG+GG+SI
Sbjct:     7 TDVGDIKIEVFCERTPKTCENFLALCASNYYNGCVFHRNIKGFMVQTGDPTGTGRGGSSI 66

Query:   117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
             WGKKFEDE+ E LKH+ RG+VSMANNGPNTN SQFFITY    HLD+KYT+FGKVIDG E
Sbjct:    67 WGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLE 126

Query:   177 TLDNLEKLPVNPN-HKPI 193
             TLD LEKLPVN   ++P+
Sbjct:   127 TLDELEKLPVNEKTYRPL 144

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO

MGI|MGI:1917475 Ppil3 "peptidylprolyl isomerase (cyclophilin)-like 3" [Mus musculus (taxid:10090)]

 Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
 Identities = 105/138 (76%), Positives = 119/138 (86%)

Query:    57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
             T  GDIKIE+FCE  PKTCENFLALCAS+YYNGC+FHRNIKGF+VQTGDPT TG+GG+SI
Sbjct:     7 TDVGDIKIEVFCERTPKTCENFLALCASNYYNGCVFHRNIKGFMVQTGDPTGTGRGGSSI 66

Query:   117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
             W KKFEDE+ E LKH+ RG+VSMANNGPNTN SQFFITY    HLD+KYT+FGKVIDG E
Sbjct:    67 WAKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLE 126

Query:   177 TLDNLEKLPVNPN-HKPI 193
             TLD LEKLPVN   ++P+
Sbjct:   127 TLDELEKLPVNEKTYRPL 144

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=ISO

ZFIN|ZDB-GENE-040625-159 zgc:86715 "zgc:86715" [Danio rerio (taxid:7955)]

 Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
 Identities = 103/131 (78%), Positives = 114/131 (87%)

Query:    57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
             T  GD+KIELFCE  PK+CENFLALCA  +YNGCIFHRNIKGFIVQTGDPT TGKGG SI
Sbjct:     7 TDLGDMKIELFCEKAPKSCENFLALCAGGFYNGCIFHRNIKGFIVQTGDPTGTGKGGTSI 66

Query:   117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
             WG+KFEDEF E LKH+ RG+V+MANNGPNTNASQFF TYA   HLD+KYT+FGK+IDG E
Sbjct:    67 WGRKFEDEFSEHLKHNVRGVVAMANNGPNTNASQFFFTYAKQPHLDMKYTVFGKIIDGLE 126

Query:   177 TLDNLEKLPVN 187
             TLD +EKLPVN
Sbjct:   127 TLDEIEKLPVN 137

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016853 "isomerase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5ZLV2	PPIL3_CHICK	5, ., 2, ., 1, ., 8	0.7898	0.5905	0.8509	yes	N/A
Q9D6L8	PPIL3_MOUSE	5, ., 2, ., 1, ., 8	0.7608	0.5905	0.8509	yes	N/A
Q4WVU5	PPIL2_ASPFU	5, ., 2, ., 1, ., 8	0.5369	0.6120	0.2452	yes	N/A
Q09928	PPIL2_SCHPO	5, ., 2, ., 1, ., 8	0.5514	0.5862	0.2635	yes	N/A
Q54E95	PPIL3_DICDI	5, ., 2, ., 1, ., 8	0.6204	0.5905	0.8509	yes	N/A
Q812D3	PPIL3_RAT	5, ., 2, ., 1, ., 8	0.7681	0.5905	0.8509	yes	N/A
Q9H2H8	PPIL3_HUMAN	5, ., 2, ., 1, ., 8	0.7826	0.5905	0.8509	yes	N/A
Q5AXT6	PPIL2_EMENI	5, ., 2, ., 1, ., 8	0.5028	0.6939	0.2775	yes	N/A
P52017	CYP10_CAEEL	5, ., 2, ., 1, ., 8	0.7153	0.5905	0.8509	yes	N/A
P0CP86	PPIL3_CRYNJ	5, ., 2, ., 1, ., 8	0.6642	0.5905	0.8203	yes	N/A
Q2U5W8	PPIL2_ASPOR	5, ., 2, ., 1, ., 8	0.5703	0.5646	0.2298	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.2.1	0.921
4th Layer	5.2.1.8	0.914

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	232
cd01928	153	cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3	2e-93
cd01923	159	cd01923, cyclophilin_RING, cyclophilin_RING: cyclo	2e-70
cd00317	146	cd00317, cyclophilin, cyclophilin: cyclophilin-typ	5e-61
cd01927	148	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclo	1e-59
pfam00160	144	pfam00160, Pro_isomerase, Cyclophilin type peptidy	2e-56
cd01922	146	cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCY	4e-52
cd01925	171	cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeC	1e-50
COG0652	158	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase	5e-50
cd01921	166	cd01921, cyclophilin_RRM, cyclophilin_RRM: cycloph	3e-46
cd01926	164	cd01926, cyclophilin_ABH_like, cyclophilin_ABH_lik	4e-46
PTZ00060	183	PTZ00060, PTZ00060, cyclophilin; Provisional	3e-39
PLN03149	186	PLN03149, PLN03149, peptidyl-prolyl isomerase H (c	7e-37
cd01920	155	cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP	3e-24
pfam00160	144	pfam00160, Pro_isomerase, Cyclophilin type peptidy	9e-24
PRK10903	190	PRK10903, PRK10903, peptidyl-prolyl cis-trans isom	1e-17
PRK10791	164	PRK10791, PRK10791, peptidyl-prolyl cis-trans isom	6e-17
cd01924	176	cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40	1e-16
PTZ00221	249	PTZ00221, PTZ00221, cyclophilin; Provisional	7e-16
cd01920	155	cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP	4e-13
PRK10791	164	PRK10791, PRK10791, peptidyl-prolyl cis-trans isom	7e-12

>gnl|CDD|238909 cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3_like

 Score =  270 bits (692), Expect = 2e-93
 Identities = 112/137 (81%), Positives = 122/137 (89%)

Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T+ GDIKIELFC+DCPK CENFLALCAS YYNGCIFHRNIKGF+VQTGDPT TGKGG SI
Sbjct: 7   TNLGDIKIELFCDDCPKACENFLALCASGYYNGCIFHRNIKGFMVQTGDPTGTGKGGESI 66

Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
           WGKKFEDEF+ETLKH  RG+VSMANNGPNTN SQFFITYA   HLD KYT+FGKVIDGFE
Sbjct: 67  WGKKFEDEFRETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFE 126

Query: 177 TLDNLEKLPVNPNHKPI 193
           TLD LEKLPV+  ++P+
Sbjct: 127 TLDTLEKLPVDKKYRPL 143

Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known. Length = 153

>gnl|CDD|238904 cd01923, cyclophilin_RING, cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain

 Score =  211 bits (540), Expect = 2e-70
 Identities = 77/137 (56%), Positives = 101/137 (73%)

Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T+ GD+ +EL C+  PK CENF+ LC   YY+G IFHR+I+ F++Q GDPT TG+GG SI
Sbjct: 6   TNKGDLNLELHCDKAPKACENFIKLCKKGYYDGTIFHRSIRNFMIQGGDPTGTGRGGESI 65

Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
           WGK F+DEFK  L H  RG++SMAN+GPNTN SQFFITY +  HLD K+T+FG+V+ G E
Sbjct: 66  WGKPFKDEFKPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLE 125

Query: 177 TLDNLEKLPVNPNHKPI 193
           TL+ +E +P     +P 
Sbjct: 126 TLEAMENVPDPGTDRPK 142

This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination. Length = 159

>gnl|CDD|238194 cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases

 Score =  187 bits (478), Expect = 5e-61
 Identities = 71/137 (51%), Positives = 90/137 (65%), Gaps = 1/137 (0%)

Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T  G I IEL+ ++ PKT ENFL+L    +Y+G  FHR I GF++Q GDPT TG GG S 
Sbjct: 4   TTKGRIVIELYGDEAPKTVENFLSLARGGFYDGTTFHRVIPGFMIQGGDPTGTG-GGGSG 62

Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
            G KF DE      H  RG +SMAN GPNTN SQFFIT A   HLD K+T+FGKV++G +
Sbjct: 63  PGYKFPDENFPLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMD 122

Query: 177 TLDNLEKLPVNPNHKPI 193
            +D +E+   + N +PI
Sbjct: 123 VVDKIERGDTDENGRPI 139

This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP, whose isomerization or chaperoning activities may play a role in RNA splicing. . Length = 146

>gnl|CDD|238908 cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain

 Score =  184 bits (469), Expect = 1e-59
 Identities = 74/137 (54%), Positives = 91/137 (66%)

Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T  GDI I LF E+ PKT ENF     + YYN  IFHR IKGF++QTGDPT  G GG SI
Sbjct: 4   TTKGDIHIRLFPEEAPKTVENFTTHARNGYYNNTIFHRVIKGFMIQTGDPTGDGTGGESI 63

Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
           WGK+FEDEF  +LKH     +SMAN GPNTN SQFFIT  A   LD K+T+FG+V+ G +
Sbjct: 64  WGKEFEDEFSPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMD 123

Query: 177 TLDNLEKLPVNPNHKPI 193
            +  +E +  + N +P 
Sbjct: 124 VVQRIENVKTDKNDRPY 140

This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known. Length = 148

>gnl|CDD|215759 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

 Score =  175 bits (447), Expect = 2e-56
 Identities = 63/131 (48%), Positives = 86/131 (65%), Gaps = 5/131 (3%)

Query: 60  GDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGK 119
           G I IELF ++ PKT ENFL+LC   +Y+G IFHR I GF++Q GDPT  G GG     +
Sbjct: 9   GRIVIELFGDEAPKTVENFLSLCKKGFYDGTIFHRVIPGFMIQGGDPTGPGTGG----KR 64

Query: 120 KFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLD 179
              DEF   LKH +RG +SMA +GPN+  SQFFIT     HLD  YT+FG+V++G + ++
Sbjct: 65  SIPDEFVSKLKH-KRGTLSMARSGPNSAGSQFFITLGDAPHLDGGYTVFGRVVEGMDVVE 123

Query: 180 NLEKLPVNPNH 190
            +EK+  + + 
Sbjct: 124 KIEKVETDGDR 134

The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyze peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function. Length = 144

>gnl|CDD|238903 cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2

 Score =  165 bits (419), Expect = 4e-52
 Identities = 74/140 (52%), Positives = 95/140 (67%), Gaps = 1/140 (0%)

Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T  G+I +EL+    PKTC+NF  L    YYNG IFHR IK F++Q GDPT TG+GG SI
Sbjct: 4   TTMGEITLELYWNHAPKTCKNFYELAKRGYYNGTIFHRLIKDFMIQGGDPTGTGRGGASI 63

Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
           +GKKFEDE    LKH+  GI+SMAN GPNTN SQFFIT A    LD K+TIFG+V  G +
Sbjct: 64  YGKKFEDEIHPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMK 123

Query: 177 TLDNLEKLPVNPNHKPIFFI 196
            ++N+ ++    + +PI  +
Sbjct: 124 VIENMVEVQTQTD-RPIDEV 142

These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling. Length = 146

>gnl|CDD|238906 cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16

 Score =  162 bits (411), Expect = 1e-50
 Identities = 64/141 (45%), Positives = 89/141 (63%), Gaps = 1/141 (0%)

Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T  GDI IEL+ ++ PK C NF+ LC   YY+  IFHR + GFI+Q GDPT TG GG SI
Sbjct: 12  TTAGDIDIELWSKEAPKACRNFIQLCLEGYYDNTIFHRVVPGFIIQGGDPTGTGTGGESI 71

Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVI-DGF 175
           +G+ F+DEF   L+ + RG+V MAN G ++N SQFF T      L+ K+T+FGKV  D  
Sbjct: 72  YGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTI 131

Query: 176 ETLDNLEKLPVNPNHKPIFFI 196
             L  L ++  + + +P++  
Sbjct: 132 YNLLKLAEVETDKDERPVYPP 152

C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding. Length = 171

>gnl|CDD|223725 COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

 Score =  160 bits (406), Expect = 5e-50
 Identities = 59/141 (41%), Positives = 78/141 (55%), Gaps = 10/141 (7%)

Query: 60  GDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHT-GKGGNSIWG 118
           GDI IEL+ +  PKT  NFL L    +Y+G IFHR I GF++Q GDPT   G GG     
Sbjct: 9   GDITIELYPDKAPKTVANFLQLVKEGFYDGTIFHRVIPGFMIQGGDPTGGDGTGGPGP-- 66

Query: 119 KKFEDEFKETLKH-SERGIVSMANNG-PNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
             F+DE         +RG +SMA  G PN+N SQFFIT   +  LD KYT+FG+V++G +
Sbjct: 67  -PFKDENFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMD 125

Query: 177 TLDNLEKLPV----NPNHKPI 193
            +D ++             P 
Sbjct: 126 VVDKIKNGDTDDSGYVQDVPA 146

Length = 158

>gnl|CDD|238902 cd01921, cyclophilin_RRM, cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)

 Score =  150 bits (382), Expect = 3e-46
 Identities = 66/144 (45%), Positives = 90/144 (62%), Gaps = 8/144 (5%)

Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T  GD+ I+LF ++CP  C NFL LC   YYN C+F+   K FI QTGDPT TG GG SI
Sbjct: 4   TTLGDLVIDLFTDECPLACLNFLKLCKLKYYNFCLFYNVQKDFIAQTGDPTGTGAGGESI 63

Query: 117 WGKK-------FEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHA-HLDLKYTIF 168
           + +        FE E    LKHS++G VSM N G N N SQF+IT   +  +LD K+T+F
Sbjct: 64  YSQLYGRQARFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVF 123

Query: 169 GKVIDGFETLDNLEKLPVNPNHKP 192
           G+V++GF+ L+ +    V+ + +P
Sbjct: 124 GQVVEGFDVLEKINDAIVDDDGRP 147

This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis. Length = 166

>gnl|CDD|238907 cd01926, cyclophilin_ABH_like, cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

 Score =  150 bits (381), Expect = 4e-46
 Identities = 68/143 (47%), Positives = 86/143 (60%), Gaps = 13/143 (9%)

Query: 60  GDIKIELFCEDCPKTCENFLALCASDY--------YNGCIFHRNIKGFIVQTGDPT-HTG 110
           G I +ELF +  PKT ENF ALC  +         Y G  FHR I  F++Q GD T   G
Sbjct: 15  GRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFTRGNG 74

Query: 111 KGGNSIWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFG 169
            GG SI+G+KF DE FK  LKH+  G++SMAN GPNTN SQFFIT      LD K+ +FG
Sbjct: 75  TGGKSIYGEKFPDENFK--LKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFG 132

Query: 170 KVIDGFETLDNLEKLPVNPNHKP 192
           KV++G + +  +E +    N KP
Sbjct: 133 KVVEGMDVVKKIENVGS-GNGKP 154

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the splicesome. Length = 164

>gnl|CDD|240249 PTZ00060, PTZ00060, cyclophilin; Provisional

 Score =  133 bits (336), Expect = 3e-39
 Identities = 72/150 (48%), Positives = 87/150 (58%), Gaps = 11/150 (7%)

Query: 44  RNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASD---------YYNGCIFHR 94
           +  K F   + D    G I  ELF +  PKT ENF ALC  D         +Y G IFHR
Sbjct: 14  KRPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHR 73

Query: 95  NIKGFIVQTGDPT-HTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFI 153
            I  F+ Q GD T H G GG SI+G+KF DE    LKH + G++SMAN GPNTN SQFFI
Sbjct: 74  IIPQFMCQGGDITNHNGTGGESIYGRKFTDE-NFKLKHDQPGLLSMANAGPNTNGSQFFI 132

Query: 154 TYAAHAHLDLKYTIFGKVIDGFETLDNLEK 183
           T      LD K+ +FGKVI+G E +  +EK
Sbjct: 133 TTVPCPWLDGKHVVFGKVIEGMEVVRAMEK 162

Length = 183

>gnl|CDD|178694 PLN03149, PLN03149, peptidyl-prolyl isomerase H (cyclophilin H); Provisional

 Score =  127 bits (321), Expect = 7e-37
 Identities = 65/143 (45%), Positives = 85/143 (59%), Gaps = 11/143 (7%)

Query: 60  GDIKIELFCEDCPKTCENFLALCASDY--------YNGCIFHRNIKGFIVQTGD-PTHTG 110
           G IK+ELF +  PKT ENF   C  ++        Y GC FHR IK F++Q GD     G
Sbjct: 33  GRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDG 92

Query: 111 KGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGK 170
            G  SI+G KFEDE     KH+  G++SMAN+GPNTN  QFFIT A    LD K+ +FG+
Sbjct: 93  TGCVSIYGSKFEDE-NFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGR 151

Query: 171 VI-DGFETLDNLEKLPVNPNHKP 192
           V+ DG   +  +E +   PN++P
Sbjct: 152 VLGDGLLVVRKIENVATGPNNRP 174

Length = 186

>gnl|CDD|238901 cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E

 Score = 94.0 bits (234), Expect = 3e-24
 Identities = 48/136 (35%), Positives = 73/136 (53%), Gaps = 9/136 (6%)

Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T  GDI +EL+ +  P T ENFLA     +Y+  IFHR I GF++Q G  T       + 
Sbjct: 4   TSLGDIVVELYDDKAPITVENFLAYVRKGFYDNTIFHRVISGFVIQGGGFTPDLAQKET- 62

Query: 117 WGKKFEDEFKETLKHSERGIVSMA-NNGPNTNASQFFITYAAHAHLDLK-----YTIFGK 170
             K  ++E    L ++ RG ++MA  N P++  SQFFI    +A LD +     YT+FG+
Sbjct: 63  -LKPIKNEAGNGLSNT-RGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGE 120

Query: 171 VIDGFETLDNLEKLPV 186
           V +G + +D +  +  
Sbjct: 121 VTEGMDVVDKIAGVET 136

coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding. Length = 155

>gnl|CDD|215759 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

 Score = 92.3 bits (230), Expect = 9e-24
 Identities = 31/58 (53%), Positives = 42/58 (72%)

Query: 3  VSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTG 60
          + + T++G I IELF ++ PKT ENFL+LC   +Y+G IFHR I GF++Q GDPT  G
Sbjct: 2  LDITTNLGRIVIELFGDEAPKTVENFLSLCKKGFYDGTIFHRVIPGFMIQGGDPTGPG 59

The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyze peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function. Length = 144

>gnl|CDD|182824 PRK10903, PRK10903, peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional

 Score = 77.2 bits (190), Expect = 1e-17
 Identities = 47/149 (31%), Positives = 74/149 (49%), Gaps = 14/149 (9%)

Query: 48  GFIVQTGDP-----THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQ 102
             +   GDP     T  G+I++EL  +  P + +NF+    S +YN   FHR I GF++Q
Sbjct: 21  AALAAKGDPHVLLTTSAGNIELELNSQKAPVSVKNFVDYVNSGFYNNTTFHRVIPGFMIQ 80

Query: 103 TGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNA-SQFFITYAAHAHL 161
            G  T   +          ++E    L+++ RG ++MA      +A SQFFI  A +A L
Sbjct: 81  GGGFTEQMQQKKP--NPPIKNEADNGLRNT-RGTIAMARTADKDSATSQFFINVADNAFL 137

Query: 162 -----DLKYTIFGKVIDGFETLDNLEKLP 185
                D  Y +FGKV+ G +  D + ++P
Sbjct: 138 DHGQRDFGYAVFGKVVKGMDVADKISQVP 166

Length = 190

>gnl|CDD|182734 PRK10791, PRK10791, peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional

 Score = 74.9 bits (184), Expect = 6e-17
 Identities = 43/137 (31%), Positives = 71/137 (51%), Gaps = 16/137 (11%)

Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTG--DPTHTGKGGN 114
           T+ GDI I+ F +  P+T +NFL  C   +YN  IFHR I GF++Q G  +P    K   
Sbjct: 6   TNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQKATK 65

Query: 115 SIWGKKFEDEFKETLKHSERGIVSMA-NNGPNTNASQFFITYAAHAHLDLK--------Y 165
                  ++E    LK++ RG ++MA    P++  +QFFI    +  L+          Y
Sbjct: 66  E----PIKNEANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGY 120

Query: 166 TIFGKVIDGFETLDNLE 182
            +F +V++G + +D ++
Sbjct: 121 CVFAEVVEGMDVVDKIK 137

Length = 164

>gnl|CDD|238905 cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40

 Score = 74.8 bits (184), Expect = 1e-16
 Identities = 51/163 (31%), Positives = 71/163 (43%), Gaps = 34/163 (20%)

Query: 54  GDPTHTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDP------- 106
           G+ T  G I I L   + P T  NF+ L    +Y+G  FHR   GF+VQTGDP       
Sbjct: 1   GEATDNGTITIVLDGYNAPVTAGNFVDLVERGFYDGMEFHRVEGGFVVQTGDPQGKNPGF 60

Query: 107 --THTGK------------GGNSIWGKKFED--EFKE--TLKHSERGIVSMAN--NGPNT 146
               TGK                ++GK  E+   + E   L  +  G ++MA     PN+
Sbjct: 61  PDPETGKSRTIPLEIKPEGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNS 120

Query: 147 NASQFFITYAAHAH-------LDLKYTIFGKVIDGFETLDNLE 182
            +SQFF     +         LD +Y +FG V DG + L  L+
Sbjct: 121 ASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDILRELK 163

Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation. Length = 176

>gnl|CDD|140248 PTZ00221, PTZ00221, cyclophilin; Provisional

 Score = 73.8 bits (181), Expect = 7e-16
 Identities = 46/154 (29%), Positives = 72/154 (46%), Gaps = 18/154 (11%)

Query: 59  TGDIKIELFCEDCPKTCENFLALCAS------------DYYNGCIFHRNIKGFIVQTGDP 106
            G +  ELF +  P+T ENF AL               DY    + H +    I+  G+ 
Sbjct: 66  AGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGEL 125

Query: 107 THTGKGGNSIWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKY 165
                   S  G    DE ++   +H+ERG+++M + GP+T+ S F IT      LD K 
Sbjct: 126 DSFNV---SSTGTPIADEGYRH--RHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQ 180

Query: 166 TIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYA 199
            +FGK +D    L+ LE LP++   +P+  +T +
Sbjct: 181 VVFGKAVDDLSLLEKLESLPLDDVGRPLLPVTVS 214

Length = 249

>gnl|CDD|238901 cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E

 Score = 64.4 bits (157), Expect = 4e-13
 Identities = 23/50 (46%), Positives = 31/50 (62%)

Query: 5  LHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTG 54
            T +GDI +EL+ +  P T ENFLA     +Y+  IFHR I GF++Q G
Sbjct: 2  FQTSLGDIVVELYDDKAPITVENFLAYVRKGFYDNTIFHRVISGFVIQGG 51

coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding. Length = 155

>gnl|CDD|182734 PRK10791, PRK10791, peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional

 Score = 61.4 bits (149), Expect = 7e-12
 Identities = 25/52 (48%), Positives = 34/52 (65%)

Query: 3  VSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTG 54
          V+ HT+ GDI I+ F +  P+T +NFL  C   +YN  IFHR I GF++Q G
Sbjct: 2  VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGG 53

Length = 164

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	232
KOG0881|consensus	164		100.0
cd01928	153	Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Pro	100.0
KOG0884|consensus	161		100.0
KOG0880|consensus	217		100.0
cd01923	159	cyclophilin_RING cyclophilin_RING: cyclophilin-typ	100.0
cd01921	166	cyclophilin_RRM cyclophilin_RRM: cyclophilin-type	100.0
COG0652	158	PpiB Peptidyl-prolyl cis-trans isomerase (rotamase	100.0
cd01927	148	cyclophilin_WD40 cyclophilin_WD40: cyclophilin-typ	100.0
KOG0546|consensus	372		100.0
KOG0882|consensus	558		100.0
KOG0883|consensus	518		100.0
cd01922	146	cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: c	100.0
cd01925	171	cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like:	100.0
PLN03149	186	peptidyl-prolyl isomerase H (cyclophilin H); Provi	100.0
PRK10903	190	peptidyl-prolyl cis-trans isomerase A (rotamase A)	100.0
cd01926	164	cyclophilin_ABH_like cyclophilin_ABH_like: Cycloph	100.0
PRK10791	164	peptidyl-prolyl cis-trans isomerase B (rotamase B)	100.0
KOG0415|consensus	479		100.0
PTZ00221	249	cyclophilin; Provisional	100.0
PTZ00060	183	cyclophilin; Provisional	100.0
KOG0879|consensus	177		100.0
cd01920	155	cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyc	100.0
KOG0885|consensus	439		100.0
cd00317	146	cyclophilin cyclophilin: cyclophilin-type peptidyl	100.0
PF00160	155	Pro_isomerase: Cyclophilin type peptidyl-prolyl ci	100.0
cd01924	176	cyclophilin_TLP40_like cyclophilin_TLP40_like: cyc	100.0
KOG0111|consensus	298		100.0
KOG0865|consensus	167		99.95
cd01921	166	cyclophilin_RRM cyclophilin_RRM: cyclophilin-type	99.91
COG0652	158	PpiB Peptidyl-prolyl cis-trans isomerase (rotamase	99.89
cd01924	176	cyclophilin_TLP40_like cyclophilin_TLP40_like: cyc	99.88
cd01927	148	cyclophilin_WD40 cyclophilin_WD40: cyclophilin-typ	99.88
cd01922	146	cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: c	99.87
cd01928	153	Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Pro	99.87
cd01920	155	cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyc	99.86
cd01923	159	cyclophilin_RING cyclophilin_RING: cyclophilin-typ	99.86
PRK10791	164	peptidyl-prolyl cis-trans isomerase B (rotamase B)	99.85
PLN03149	186	peptidyl-prolyl isomerase H (cyclophilin H); Provi	99.84
PRK10903	190	peptidyl-prolyl cis-trans isomerase A (rotamase A)	99.84
cd01926	164	cyclophilin_ABH_like cyclophilin_ABH_like: Cycloph	99.84
cd00317	146	cyclophilin cyclophilin: cyclophilin-type peptidyl	99.83
PTZ00060	183	cyclophilin; Provisional	99.83
PTZ00221	249	cyclophilin; Provisional	99.83
KOG0881|consensus	164		99.82
KOG0884|consensus	161		99.81
KOG0880|consensus	217		99.8
cd01925	171	cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like:	99.77
PF00160	155	Pro_isomerase: Cyclophilin type peptidyl-prolyl ci	99.77
KOG0415|consensus	479		99.75
KOG0883|consensus	518		99.73
KOG0882|consensus	558		99.67
KOG0879|consensus	177		99.64
KOG0546|consensus	372		99.64
KOG0885|consensus	439		99.4
KOG0111|consensus	298		98.98
KOG0865|consensus	167		98.09
TIGR03268	503	methan_mark_3 putative methanogenesis marker prote	95.39
PRK00969	508	hypothetical protein; Provisional	95.21
COG4070	512	Predicted peptidyl-prolyl cis-trans isomerase (rot	91.93
TIGR03268	503	methan_mark_3 putative methanogenesis marker prote	85.13

>KOG0881|consensus

Probab=100.00  E-value=1.1e-48  Score=279.74  Aligned_cols=152  Identities=49%  Similarity=0.822  Sum_probs=143.7

Q ss_pred             EEEEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhhh
Q psy8249           2 SVSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLAL   81 (232)
Q Consensus         2 ~v~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l   81 (232)
                      .|.+|||+|.|++|||-+.||+||+||.+|++.+||++..|||+|++|||||||||..|+                    
T Consensus        11 ~V~LeTsmG~i~~ElY~kHaP~TC~NF~eLarrgYYn~v~FHRii~DFmiQGGDPTGTGR--------------------   70 (164)
T KOG0881|consen   11 NVTLETSMGKITLELYWKHAPRTCQNFAELARRGYYNGVIFHRIIKDFMIQGGDPTGTGR--------------------   70 (164)
T ss_pred             eEEEeecccceehhhhhhcCcHHHHHHHHHHhcccccceeeeehhhhheeecCCCCCCCC--------------------
Confidence            489999999999999999999999999999999999999999999999999999986665                    


Q ss_pred             ccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCCC
Q psy8249          82 CASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHL  161 (232)
Q Consensus        82 ~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~l  161 (232)
                                                    ++.|+||.+|.+|.++.|+|...|++|||+++|++++|||||||.+.+||
T Consensus        71 ------------------------------GGaSIYG~kF~DEi~~dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~L  120 (164)
T KOG0881|consen   71 ------------------------------GGASIYGDKFEDEIHSDLKHTGAGILSMANAGPNTNGSQFFITLAPTQWL  120 (164)
T ss_pred             ------------------------------CccccccchhhhhhhhhhcccchhhhhhhccCCCCCCceEEEEecCcccc
Confidence                                          45577888999999999999999999999999999999999999999999


Q ss_pred             CCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeee
Q psy8249         162 DLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAH  203 (232)
Q Consensus       162 d~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~  203 (232)
                      |++|++||||+.||+|+.++-.+.+++++||..+++|..+-.
T Consensus       121 DGKHTIFGRV~~Gm~vikr~G~v~Td~~DRPi~~~kIika~~  162 (164)
T KOG0881|consen  121 DGKHTIFGRVCSGMEVIKRMGMVETDNSDRPIDEVKIIKAYP  162 (164)
T ss_pred             CCcceeehhhhhhHHHHHhhcceecCCCCCCccceeeEeeec
Confidence            999999999999999999999999999999999999986643

>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like

Probab=100.00  E-value=9.4e-46  Score=285.10  Aligned_cols=152  Identities=76%  Similarity=1.274  Sum_probs=136.6

Q ss_pred             CEEEEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhh
Q psy8249           1 MSVSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLA   80 (232)
Q Consensus         1 ~~v~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~   80 (232)
                      |+|.|+|+.|+|+|+||++.||+|++||++||+++||+++.|||++++|++|+||+...|..                  
T Consensus         1 m~v~l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~f~iq~Gd~~~~g~g------------------   62 (153)
T cd01928           1 MSVTLHTNLGDIKIELFCDDCPKACENFLALCASGYYNGCIFHRNIKGFMVQTGDPTGTGKG------------------   62 (153)
T ss_pred             CEEEEEEccccEEEEEcCCCCcHHHHHHHHHHhcCccCCcEEEEeCCCCEEEccccCCCCCC------------------
Confidence            99999999999999999999999999999999999999999999999999999997633321                  


Q ss_pred             hccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCC
Q psy8249          81 LCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAH  160 (232)
Q Consensus        81 l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~  160 (232)
                                                      +.++++..+++|..+.+.|+.+|+++|++.++++++|||||++++.|+
T Consensus        63 --------------------------------~~~~~~~~~~~e~~~~~~~~~~G~v~ma~~~~~~~~SqFfI~~~~~~~  110 (153)
T cd01928          63 --------------------------------GESIWGKKFEDEFRETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPH  110 (153)
T ss_pred             --------------------------------CCccCCCccccccccCCCcCCCcEEEEeeCCCCCcccEEEEEeCCCcc
Confidence                                            112334456667666778889999999999999999999999999999


Q ss_pred             CCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeee
Q psy8249         161 LDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHA  202 (232)
Q Consensus       161 ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~  202 (232)
                      ||++|+|||+|++|||+|++|++++++++++|..+|+|.+|.
T Consensus       111 Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~~  152 (153)
T cd01928         111 LDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEEIRIKDVT  152 (153)
T ss_pred             cCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCCeEEEEeE
Confidence            999999999999999999999999999999999999999873

Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.

>KOG0884|consensus

Probab=100.00  E-value=6.2e-46  Score=264.24  Aligned_cols=159  Identities=74%  Similarity=1.227  Sum_probs=148.7

Q ss_pred             CEEEEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhh
Q psy8249           1 MSVSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLA   80 (232)
Q Consensus         1 ~~v~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~   80 (232)
                      |||.++|..|+|+|+||.+.+|++|+||+.||.+.||+++.|||-+++||+|+|+++..|                    
T Consensus         1 msvtlht~~gdikiev~~e~tpktce~~l~~~~~~~~n~~~~~~~~~~f~v~~~~~~~tg--------------------   60 (161)
T KOG0884|consen    1 MSVTLHTDVGDIKIEVFCERTPKTCENFLALCASDYYNGCIFHRNIKGFMVQTGDPTHTG--------------------   60 (161)
T ss_pred             CeEEEeeccCcEEEEEEecCChhHHHHHHHHhhhhhccceeecCCCCCcEEEeCCCCCCC--------------------
Confidence            999999999999999999999999999999999999999999999999999999987444                    


Q ss_pred             hccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCC
Q psy8249          81 LCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAH  160 (232)
Q Consensus        81 l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~  160 (232)
                                                    .++.|++|+++.+|+.+.|+|+.+|.+|||+++|++++||||||.+.+||
T Consensus        61 ------------------------------rgg~siwg~~fede~~~~lkh~~rg~vsmanngp~tn~sqffity~kq~h  110 (161)
T KOG0884|consen   61 ------------------------------RGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPH  110 (161)
T ss_pred             ------------------------------CCCccccCCcchHHHHHHHhhccceeEEcccCCCCCCCceEEEEecCCCc
Confidence                                          35668889999999999999999999999999999999999999999999


Q ss_pred             CCCCccEEEEEeeccchhhhcccCCCCCC-CCceeeEEEeeeeecCCCCc
Q psy8249         161 LDLKYTIFGKVIDGFETLDNLEKLPVNPN-HKPIFFITYAAHAHLDLKYT  209 (232)
Q Consensus       161 ld~~~tvfG~VveG~dvl~~I~~~~~~~~-~~P~~~i~I~~~~~ld~~~~  209 (232)
                      ||.+|++||+|++|+|.|+.|+..+++++ .||+.++.|.+...-..+|+
T Consensus       111 ldmkytvfgkvidg~etldele~l~v~~ktyrpl~~~~ik~itihanp~a  160 (161)
T KOG0884|consen  111 LDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIHANPFA  160 (161)
T ss_pred             cceeEeeeeeeccchhhHHHHhhcccCccccccchheeeeeeEEecCcCC
Confidence            99999999999999999999999999986 99999999988876666554

>KOG0880|consensus

Probab=100.00  E-value=6e-46  Score=285.43  Aligned_cols=158  Identities=43%  Similarity=0.693  Sum_probs=141.4

Q ss_pred             EEE-EeCCeeEEEEeecCCCchhHHhHHHhhhcC---c-ccceeeeeecceeEEeeCCCccccccceeccccCCCCcchh
Q psy8249           3 VSL-HTDVGDIKIELFCEDCPKTCENFLALCASD---Y-YNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCEN   77 (232)
Q Consensus         3 v~~-~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~---~-y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~   77 (232)
                      +.+ +...|+|+|+||++.+|+||+||.+||.++   + |.++.|||||++|||||||-+                    
T Consensus        46 i~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~gY~gS~FhRVi~nfmIQGGd~t--------------------  105 (217)
T KOG0880|consen   46 IEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYGYKGSKFHRVIPNFMIQGGDFT--------------------  105 (217)
T ss_pred             EEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcccCCceeeeeecCceeecCccc--------------------
Confidence            344 567899999999999999999999999832   2 788888888888888888854                    


Q ss_pred             hhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccC
Q psy8249          78 FLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAA  157 (232)
Q Consensus        78 F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~  157 (232)
                                                   .+++.++.|+||.++++|+. .|+|.++|.+|||+.+|++++||||||+..
T Consensus       106 -----------------------------~g~gtGg~SIyG~~F~DENf-~LkH~rpG~lSMAn~GpDtNGsQFfItT~~  155 (217)
T KOG0880|consen  106 -----------------------------KGDGTGGKSIYGEKFPDENF-KLKHDRPGRLSMANAGPDTNGSQFFITTVK  155 (217)
T ss_pred             -----------------------------cCCCCCCeEeecCCCCCccc-eeecCCCceEeeeccCCCCCCceEEEEecC
Confidence                                         12355677899999999998 899999999999999999999999999999


Q ss_pred             CCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCcc
Q psy8249         158 HAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYTI  210 (232)
Q Consensus       158 ~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~~  210 (232)
                      .+||||+|+|||+|++|||++.+|+.+++++.++|.+.++|.+|++|..+|+.
T Consensus       156 t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~dkP~e~v~I~~~g~l~~~~~~  208 (217)
T KOG0880|consen  156 TPWLDGKHVVFGQVLEGMDVVRKIENVKTDERDKPLEDVVIANCGELPVEYLE  208 (217)
T ss_pred             CccccCceeEEeeehhhHHHHHHHHhcccCCCCCccccEEEeecCcccccchh
Confidence            99999999999999999999999999999999999999999999999987653

>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain

Probab=100.00  E-value=3.1e-45  Score=284.13  Aligned_cols=157  Identities=51%  Similarity=0.931  Sum_probs=142.1

Q ss_pred             EEEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhhhc
Q psy8249           3 VSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALC   82 (232)
Q Consensus         3 v~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~   82 (232)
                      |+|+|++|+|+|+||++.||+|++||++||+.+||+++.|||++++|++|+||++..|..                    
T Consensus         2 v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~~~iq~Gd~~~~g~~--------------------   61 (159)
T cd01923           2 VRLHTNKGDLNLELHCDKAPKACENFIKLCKKGYYDGTIFHRSIRNFMIQGGDPTGTGRG--------------------   61 (159)
T ss_pred             EEEEEccccEEEEEeCCCChHHHHHHHHHHhcCccCCcEEEEEeCCcEEEecccCCCCCC--------------------
Confidence            789999999999999999999999999999999999999999999999999997643321                    


Q ss_pred             cCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCCCC
Q psy8249          83 ASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLD  162 (232)
Q Consensus        83 ~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld  162 (232)
                                                    +.++++..+++|....++|+++|+++|+++++++++|||||+++++|+||
T Consensus        62 ------------------------------~~~~~g~~~~~E~~~~~~h~~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld  111 (159)
T cd01923          62 ------------------------------GESIWGKPFKDEFKPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLD  111 (159)
T ss_pred             ------------------------------CccccCCccCcccccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccC
Confidence                                          12333455666766678888999999999999999999999999999999


Q ss_pred             CCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCc
Q psy8249         163 LKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYT  209 (232)
Q Consensus       163 ~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~  209 (232)
                      ++|+|||+|++|||+|++|++.+++++++|+.+|+|.+|.++.++|.
T Consensus       112 ~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~~~i~~dpf~  158 (159)
T cd01923         112 GKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIKIEDTSVFVDPFE  158 (159)
T ss_pred             CCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEeEEEeCCCC
Confidence            99999999999999999999999998999999999999999999886

This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.

>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)

Probab=100.00  E-value=3.9e-44  Score=279.98  Aligned_cols=163  Identities=40%  Similarity=0.667  Sum_probs=139.9

Q ss_pred             EEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhhhcc
Q psy8249           4 SLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCA   83 (232)
Q Consensus         4 ~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~   83 (232)
                      +|+|+.|+|+|+||++.||+|++||++||+.+||+++.||||+++||+|+||+...|.....++....            
T Consensus         1 ll~Ts~G~i~ieL~~~~aP~t~~nF~~L~~~~~Y~g~~fhrvi~~f~iQgGd~~~~g~~~~~~~~~~~------------   68 (166)
T cd01921           1 LLETTLGDLVIDLFTDECPLACLNFLKLCKLKYYNFCLFYNVQKDFIAQTGDPTGTGAGGESIYSQLY------------   68 (166)
T ss_pred             CcEeccCCEEEEEcCCCCCHHHHHHHHHHhcCCcCCCEEEEEeCCceEEECCcCCCCCCCcccccccc------------
Confidence            47999999999999999999999999999999999999999999999999998755443221110000            


Q ss_pred             CCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccC-CCCCC
Q psy8249          84 SDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAA-HAHLD  162 (232)
Q Consensus        84 ~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~-~~~ld  162 (232)
                                                     ...+..+++|..+.++|+.+|+++|++.++++++|||||++++ .|+||
T Consensus        69 -------------------------------~~~~~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ld  117 (166)
T cd01921          69 -------------------------------GRQARFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLD  117 (166)
T ss_pred             -------------------------------cccCcccCcccCCccccCCceEEEEeECCCCCccceEEEEcCCCCcccC
Confidence                                           0012234556666788989999999999999999999999986 79999


Q ss_pred             CCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCc
Q psy8249         163 LKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYT  209 (232)
Q Consensus       163 ~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~  209 (232)
                      ++|+|||+|++|||+|++|++++++++++|..+|+|.+|.+|+++|.
T Consensus       118 g~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i~I~~~~i~~~pf~  164 (166)
T cd01921         118 GKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDIRIKHTHILDDPFP  164 (166)
T ss_pred             CCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEEEEECCCCC
Confidence            99999999999999999999999999999999999999999999875

This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.

>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.9e-44  Score=272.27  Aligned_cols=147  Identities=43%  Similarity=0.732  Sum_probs=124.2

Q ss_pred             EEEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccc-cccceeccccCCCCcchhhhhh
Q psy8249           3 VSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHT-GDIKIELFCEDCPKTCENFLAL   81 (232)
Q Consensus         3 v~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~-G~i~i~l~~~~~P~~~~~F~~l   81 (232)
                      |.++|+.|+|+|+||++.||+||+||++||+.+||+|+.|||||++||+||||++.. |.                    
T Consensus         2 v~~~t~~G~I~ieL~~~~aP~Tv~NF~~l~~~g~Ydg~~FHRVi~~FmiQgGd~~~~~g~--------------------   61 (158)
T COG0652           2 VILETNKGDITIELYPDKAPKTVANFLQLVKEGFYDGTIFHRVIPGFMIQGGDPTGGDGT--------------------   61 (158)
T ss_pred             ceeeccCCCEEEEECCCcCcHHHHHHHHHHHcCCCCCceEEEeecCceeecCCCCCCCCC--------------------
Confidence            789999999999999999999999999999999999999999999999999998743 11                    


Q ss_pred             ccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCccccccccccc--ccceEEecccC-CCcccceEEeeccCC
Q psy8249          82 CASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHS--ERGIVSMANNG-PNTNASQFFITYAAH  158 (232)
Q Consensus        82 ~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~--~~g~v~~~~~~-~~~~~s~f~itl~~~  158 (232)
                                                    ++.   +..+++|+... .++  .+|++||||.+ |++++|||||++.++
T Consensus        62 ------------------------------gg~---~~~f~~E~~~~-~~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~  107 (158)
T COG0652          62 ------------------------------GGP---GPPFKDENFAL-NGDRHKRGTLSMARAGDPNSNGSQFFITVVDN  107 (158)
T ss_pred             ------------------------------CCC---CCCCccccccc-ccccCCcceEeEcccCCcCCccCeEEEEecCC
Confidence                                          111   24566675532 333  49999999998 999999999999999


Q ss_pred             CCCCCCccEEEEEeeccchhhhcccCCCCCC----CCceeeEEEeeeee
Q psy8249         159 AHLDLKYTIFGKVIDGFETLDNLEKLPVNPN----HKPIFFITYAAHAH  203 (232)
Q Consensus       159 ~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~----~~P~~~i~I~~~~~  203 (232)
                      ||||++|+|||+|++|||+|++|++..+...    ..|..+++|.....
T Consensus       108 ~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~~~~i~~~~~  156 (158)
T COG0652         108 PFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKILSVKI  156 (158)
T ss_pred             cccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCCCeEEeeeee
Confidence            9999999999999999999999999887753    34556677765443

>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain

Probab=100.00  E-value=7.1e-44  Score=273.34  Aligned_cols=147  Identities=51%  Similarity=0.832  Sum_probs=131.5

Q ss_pred             EEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhhhcc
Q psy8249           4 SLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCA   83 (232)
Q Consensus         4 ~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~   83 (232)
                      .|+|++|+|+|+||++.||+|++||++||+.+||+++.|||++++|++|+||+...|..                     
T Consensus         1 ~i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~g~g---------------------   59 (148)
T cd01927           1 IIHTTKGDIHIRLFPEEAPKTVENFTTHARNGYYNNTIFHRVIKGFMIQTGDPTGDGTG---------------------   59 (148)
T ss_pred             CeEeccccEEEEEeCCCCcHHHHHHHHHhhcCCcCCcEEEEEcCCcEEEecccCCCCCC---------------------
Confidence            47999999999999999999999999999999999999999999999999997533221                     


Q ss_pred             CCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCCCCC
Q psy8249          84 SDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDL  163 (232)
Q Consensus        84 ~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~  163 (232)
                                                   +.++++..+++|..+.++|+++|+++|++.++++++|||||+++++|+||+
T Consensus        60 -----------------------------~~~~~~~~~~~e~~~~~~h~~~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg  110 (148)
T cd01927          60 -----------------------------GESIWGKEFEDEFSPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDN  110 (148)
T ss_pred             -----------------------------CCcccCCccccccccccCcCCCeEEEEeeCCCCCCCceEEEEcCCCcccCC
Confidence                                         123344556677766788888999999999999999999999999999999


Q ss_pred             CccEEEEEeeccchhhhcccCCCCCCCCceeeEEEee
Q psy8249         164 KYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAA  200 (232)
Q Consensus       164 ~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~  200 (232)
                      +|+|||+|++|||+|++|++++++++++|..+|+|.+
T Consensus       111 ~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~  147 (148)
T cd01927         111 KHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKIIN  147 (148)
T ss_pred             CceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeEEEe
Confidence            9999999999999999999999998999999999974

This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.

>KOG0546|consensus

Probab=100.00  E-value=1.3e-44  Score=301.95  Aligned_cols=163  Identities=43%  Similarity=0.652  Sum_probs=155.8

Q ss_pred             cceeEEeeCCCccccccceeccccCCCCcchhhhhhccCC-----------CCCCceeEEeecCcEEEcCCCC-CCCCCC
Q psy8249          46 IKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASD-----------YYNGCIFHRNIKGFIVQTGDPT-HTGKGG  113 (232)
Q Consensus        46 i~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~~~-----------~y~g~~~~rv~~~~~vq~G~~~-~~~~~~  113 (232)
                      .+.|+.+..+....|+|+++||.+.+|+|++||++||++.           .|+|+.||||+++|||||||.+ ++|+++
T Consensus         9 pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGtGG   88 (372)
T KOG0546|consen    9 PRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGTGG   88 (372)
T ss_pred             ceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCCCc
Confidence            4678999999999999999999999999999999999975           5999999999999999999988 778999


Q ss_pred             CccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCce
Q psy8249         114 NSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPI  193 (232)
Q Consensus       114 ~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~  193 (232)
                      .||||.+|.+|++ .++|+++++|||||.||++++||||||+.++|||||.|+|||+||.|++|++.|+++.+++..+|.
T Consensus        89 eSIYG~~FdDEnF-~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~skP~  167 (372)
T KOG0546|consen   89 ESIYGEKFDDENF-ELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESKPL  167 (372)
T ss_pred             ccccccccccccc-eeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccCCCCc
Confidence            9999999999999 899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEEeeeeecCCCCc
Q psy8249         194 FFITYAAHAHLDLKYT  209 (232)
Q Consensus       194 ~~i~I~~~~~ld~~~~  209 (232)
                      .+|+|.+||+|-..+.
T Consensus       168 ~dV~I~dCGel~~~~~  183 (372)
T KOG0546|consen  168 ADVVISDCGELVKKSK  183 (372)
T ss_pred             cceEeccccccccccc
Confidence            9999999999988655

>KOG0882|consensus

Probab=100.00  E-value=2.4e-44  Score=306.05  Aligned_cols=151  Identities=46%  Similarity=0.799  Sum_probs=143.6

Q ss_pred             EEEEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhhh
Q psy8249           2 SVSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLAL   81 (232)
Q Consensus         2 ~v~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l   81 (232)
                      ++.|+|++|+|.|+|||++||++|+||..+++.||||+..|||+|++||||+|||..                       
T Consensus       406 ~aiihtt~gdi~~kl~p~ecpktvenf~th~rngyy~~~~fhriik~fmiqtgdp~g-----------------------  462 (558)
T KOG0882|consen  406 AAIIHTTQGDIHIKLYPEECPKTVENFTTHSRNGYYDNHTFHRIIKGFMIQTGDPLG-----------------------  462 (558)
T ss_pred             ceEEEecccceEEEecccccchhhhhhhccccCccccCcchHHhhhhheeecCCCCC-----------------------
Confidence            478999999999999999999999999999999999999999999999999999863                       


Q ss_pred             ccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCCC
Q psy8249          82 CASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHL  161 (232)
Q Consensus        82 ~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~l  161 (232)
                                                 .|.+++|+||+.+.+|+++.|+|+++-.+||||+||+++|||||||+...|||
T Consensus       463 ---------------------------~gtggesiwg~dfedefh~~lrhdrpft~smanag~ntngsqffit~~~tpwl  515 (558)
T KOG0882|consen  463 ---------------------------DGTGGESIWGKDFEDEFHPNLRHDRPFTVSMANAGPNTNGSQFFITTVPTPWL  515 (558)
T ss_pred             ---------------------------CCCCCcccccccchhhcCcccccCCCceEEecccCCCCCCceEEEEecCcccc
Confidence                                       34567889999999999999999999999999999999999999999999999


Q ss_pred             CCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeee
Q psy8249         162 DLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHA  202 (232)
Q Consensus       162 d~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~  202 (232)
                      |++|||||||..||||+++|+++.++.++||.+++.|.+..
T Consensus       516 d~khtvfgrv~~gm~vvqri~~v~t~k~drp~e~v~iinis  556 (558)
T KOG0882|consen  516 DGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPYEDVKIINIS  556 (558)
T ss_pred             CCcceeEEEEecchhHHhHhhhcccCcCCCCCCceeEEEEe
Confidence            99999999999999999999999999999999999998754

>KOG0883|consensus

Probab=100.00  E-value=3.4e-44  Score=299.95  Aligned_cols=161  Identities=48%  Similarity=0.871  Sum_probs=153.6

Q ss_pred             EEEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhhhc
Q psy8249           3 VSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALC   82 (232)
Q Consensus         3 v~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~   82 (232)
                      |+|.|..|.+.|+|+++.||++|+||+.||+.|||+++.|||.|++|||||||||..|                      
T Consensus       280 vrl~Tn~G~lNlELhcd~~P~aceNFI~lc~~gYYnnt~FHRsIrnFmiQGGDPTGTG----------------------  337 (518)
T KOG0883|consen  280 VRLVTNHGPLNLELHCDYAPRACENFITLCKNGYYNNTIFHRSIRNFMIQGGDPTGTG----------------------  337 (518)
T ss_pred             EEEeccCCceeeEeecCcchHHHHHHHHHHhcccccchHHHHHHHHHeeeCCCCCCCC----------------------
Confidence            8899999999999999999999999999999999999999999999999999988544                      


Q ss_pred             cCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCCCC
Q psy8249          83 ASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLD  162 (232)
Q Consensus        83 ~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld  162 (232)
                                                  .+++|+||+.|++|+.+.|.|+.||++|||++||++++|||||+...+.|||
T Consensus       338 ----------------------------~GGeSiWgKpFkDEf~~~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd  389 (518)
T KOG0883|consen  338 ----------------------------RGGESIWGKPFKDEFCSNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLD  389 (518)
T ss_pred             ----------------------------CCCccccCCccccccCCCCCcCCcceEeeccCCCCCCCceEEEEecchhhcc
Confidence                                        4677899999999999999999999999999999999999999999999999


Q ss_pred             CCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCcccce
Q psy8249         163 LKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYTIFGK  213 (232)
Q Consensus       163 ~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~~fg~  213 (232)
                      ++||+||+||.|+|+|.+|++++++++++|+.+|+|.+..+.-++|+.+-+
T Consensus       390 ~KHTIFGrvVGGldtL~amEnve~d~~DrP~e~I~i~~~~VFVdPfeEa~~  440 (518)
T KOG0883|consen  390 NKHTIFGRVVGGLDTLTAMENVETDEKDRPKEEIKIEDAIVFVDPFEEADK  440 (518)
T ss_pred             ccceeeeeeeccHHHHHHHhcCCCCCCCCcccceEEeeeEEeeCcHHHHHH
Confidence            999999999999999999999999999999999999999999888876644

>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2

Probab=100.00  E-value=3.5e-43  Score=268.75  Aligned_cols=145  Identities=51%  Similarity=0.854  Sum_probs=129.2

Q ss_pred             EEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhhhcc
Q psy8249           4 SLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCA   83 (232)
Q Consensus         4 ~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~   83 (232)
                      +|+|+.|+|+|+||++.||++++||++||+++||+++.|||++++|++|+||++..|..                     
T Consensus         1 ~i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~g~~---------------------   59 (146)
T cd01922           1 TLETTMGEITLELYWNHAPKTCKNFYELAKRGYYNGTIFHRLIKDFMIQGGDPTGTGRG---------------------   59 (146)
T ss_pred             CeEeccccEEEEEcCCCCcHHHHHHHHHHhcCCcCCcEEEEEcCCcEEEecccCCCCCC---------------------
Confidence            47999999999999999999999999999999999999999999999999997633321                     


Q ss_pred             CCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCCCCC
Q psy8249          84 SDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDL  163 (232)
Q Consensus        84 ~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~  163 (232)
                                                   +.++++..+++|..+.++|+++|+++|++.++++++|||||+++++|+||+
T Consensus        60 -----------------------------~~~~~~~~~~~e~~~~~~h~~~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~  110 (146)
T cd01922          60 -----------------------------GASIYGKKFEDEIHPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDG  110 (146)
T ss_pred             -----------------------------cccccCCCcccccccCcCCCCCeEEEEeeCCCCCCccEEEEEcCCCcccCC
Confidence                                         112334456667666788888999999999999999999999999999999


Q ss_pred             CccEEEEEeeccchhhhcccCCCCCCCCceeeEEEe
Q psy8249         164 KYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYA  199 (232)
Q Consensus       164 ~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~  199 (232)
                      +|+|||+|++|||||++|++++++ +++|..+|+|.
T Consensus       111 ~~tvFG~V~~G~dvl~~I~~~~~~-~~~P~~~I~I~  145 (146)
T cd01922         111 KHTIFGRVSKGMKVIENMVEVQTQ-TDRPIDEVKIL  145 (146)
T ss_pred             CCCEEEEEEcCHHHHHHHHhCCCC-CCCcCCCeEEe
Confidence            999999999999999999999998 88999999986

These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.

>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16

Probab=100.00  E-value=4.5e-42  Score=269.28  Aligned_cols=158  Identities=42%  Similarity=0.788  Sum_probs=141.2

Q ss_pred             EEEEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhhh
Q psy8249           2 SVSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLAL   81 (232)
Q Consensus         2 ~v~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l   81 (232)
                      +|.|+|++|+|+|+||++.||+|++||++||+.+||+++.||||+++|++|+|+++..|.                    
T Consensus         7 ~v~i~Ts~G~i~ieL~~~~~P~t~~nF~~L~~~~~Y~~~~f~Rvi~~f~iQgGd~~~~g~--------------------   66 (171)
T cd01925           7 KVILKTTAGDIDIELWSKEAPKACRNFIQLCLEGYYDNTIFHRVVPGFIIQGGDPTGTGT--------------------   66 (171)
T ss_pred             EEEEEEccccEEEEEeCCCChHHHHHHHHHHhcCCCCCCEEEEEcCCcEEEccccCCCCc--------------------
Confidence            689999999999999999999999999999999999999999999999999999763332                    


Q ss_pred             ccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCCC
Q psy8249          82 CASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHL  161 (232)
Q Consensus        82 ~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~l  161 (232)
                                                    ++.++++..+++|..+.++|+++|+++|++.++++++|||||++++.|+|
T Consensus        67 ------------------------------g~~s~~g~~~~~E~~~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~l  116 (171)
T cd01925          67 ------------------------------GGESIYGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADEL  116 (171)
T ss_pred             ------------------------------cCcccCCCccCcccccCcCCCCCcEEEECcCCCCCcccEEEEEcCCCccc
Confidence                                          11234455667777767888899999999999999999999999999999


Q ss_pred             CCCccEEEEEe-eccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCc
Q psy8249         162 DLKYTIFGKVI-DGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYT  209 (232)
Q Consensus       162 d~~~tvfG~Vv-eG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~  209 (232)
                      |++|+|||+|+ ++++++++|++++++++++|..+|+|.+|..++.+|.
T Consensus       117 dg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~P~~~i~I~~~~i~~~pf~  165 (171)
T cd01925         117 NNKHTLFGKVTGDTIYNLLKLAEVETDKDERPVYPPKITSVEVLENPFD  165 (171)
T ss_pred             CCCceEEEEEEECcHHHHHHHhcCCcCCCCCcCCCeEEEEEEEEcCCch
Confidence            99999999999 4578899999999999999999999999999998775

C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.

>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional

Probab=100.00  E-value=1.6e-40  Score=263.17  Aligned_cols=148  Identities=44%  Similarity=0.772  Sum_probs=125.9

Q ss_pred             eCCeeEEEEeecCCCchhHHhHHHhhhcCc--------ccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhh
Q psy8249           7 TDVGDIKIELFCEDCPKTCENFLALCASDY--------YNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENF   78 (232)
Q Consensus         7 t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~--------y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F   78 (232)
                      ++.|+|+|+||.+.||+|++||++||+.++        |+++.||||+++|+||+||+...                   
T Consensus        30 ~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~-------------------   90 (186)
T PLN03149         30 IPAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLKG-------------------   90 (186)
T ss_pred             cccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCcEEEcCCcccC-------------------
Confidence            367999999999999999999999998665        99999999999999999985310                   


Q ss_pred             hhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCC
Q psy8249          79 LALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAH  158 (232)
Q Consensus        79 ~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~  158 (232)
                                                    ++.++.++++..+++|.. .++|+.+|+++|++.++++++|||||++.+.
T Consensus        91 ------------------------------~g~g~~~~~g~~f~~e~~-~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~  139 (186)
T PLN03149         91 ------------------------------DGTGCVSIYGSKFEDENF-IAKHTGPGLLSMANSGPNTNGCQFFITCAKC  139 (186)
T ss_pred             ------------------------------CCCCcccccCCccCCccc-ccccCCCCEEEEeeCCCCCcccEEEEECCCC
Confidence                                          011122333444555544 4678889999999999999999999999999


Q ss_pred             CCCCCCccEEEEEe-eccchhhhcccCCCCCCCCceeeEEEeeeeec
Q psy8249         159 AHLDLKYTIFGKVI-DGFETLDNLEKLPVNPNHKPIFFITYAAHAHL  204 (232)
Q Consensus       159 ~~ld~~~tvfG~Vv-eG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~l  204 (232)
                      |+||++|+|||+|+ +|||+|++|++++++++++|..+|+|.+|+.+
T Consensus       140 p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~~P~~~i~I~~cG~~  186 (186)
T PLN03149        140 DWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVISECGEM  186 (186)
T ss_pred             CccCCCceEEEEEEECcHHHHHHHHcCCCCCCCCCcCCeEEEeCEeC
Confidence            99999999999999 79999999999999999999999999999864

>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional

Probab=100.00  E-value=3.7e-40  Score=261.79  Aligned_cols=150  Identities=31%  Similarity=0.540  Sum_probs=126.4

Q ss_pred             EEEEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhhh
Q psy8249           2 SVSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLAL   81 (232)
Q Consensus         2 ~v~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l   81 (232)
                      .|.|+|++|+|+|+||++.||+|++||++||+.+|||++.|||++++||+|+|+++.....                   
T Consensus        30 ~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRvi~~f~iQgG~~~~~~~~-------------------   90 (190)
T PRK10903         30 HVLLTTSAGNIELELNSQKAPVSVKNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQ-------------------   90 (190)
T ss_pred             EEEEEeccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEeCCceEEeCCcCCCCCC-------------------
Confidence            5899999999999999999999999999999999999999999999999999986521100                   


Q ss_pred             ccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccC-CCcccceEEeeccCCCC
Q psy8249          82 CASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNG-PNTNASQFFITYAAHAH  160 (232)
Q Consensus        82 ~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~-~~~~~s~f~itl~~~~~  160 (232)
                         .                              .++..+++|..+.+ ++.+|+|+|++.+ +++++|||||++++.++
T Consensus        91 ---~------------------------------~~~~~~~~e~~~~l-~~~~G~lama~~~~~~sn~SQFfIt~~~~~~  136 (190)
T PRK10903         91 ---K------------------------------KPNPPIKNEADNGL-RNTRGTIAMARTADKDSATSQFFINVADNAF  136 (190)
T ss_pred             ---C------------------------------CCCCcccCcccccC-cCCCcEEEeCCCCCCCCcccEEEEECcCccc
Confidence               0                              00112333433333 4589999999865 89999999999999999


Q ss_pred             CCC-----CccEEEEEeeccchhhhcccCCCCC----CCCceeeEEEeeeeec
Q psy8249         161 LDL-----KYTIFGKVIDGFETLDNLEKLPVNP----NHKPIFFITYAAHAHL  204 (232)
Q Consensus       161 ld~-----~~tvfG~VveG~dvl~~I~~~~~~~----~~~P~~~i~I~~~~~l  204 (232)
                      ||+     +|+|||+|++|||||++|+++++++    +++|..+|+|.+|.++
T Consensus       137 ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~~~~v~  189 (190)
T PRK10903        137 LDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKVL  189 (190)
T ss_pred             ccCCccCCCccEEEEEecCHHHHHHHHcCCCCCCCCCCCcccCCeEEEEEEEe
Confidence            984     8999999999999999999999976    5799999999999765

>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

Probab=100.00  E-value=3.4e-40  Score=257.36  Aligned_cols=149  Identities=45%  Similarity=0.737  Sum_probs=127.4

Q ss_pred             EEEE-EeCCeeEEEEeecCCCchhHHhHHHhhhc--C------cccceeeeeecceeEEeeCCCcc-ccccceeccccCC
Q psy8249           2 SVSL-HTDVGDIKIELFCEDCPKTCENFLALCAS--D------YYNGCIFHRNIKGFIVQTGDPTH-TGDIKIELFCEDC   71 (232)
Q Consensus         2 ~v~~-~t~~G~i~i~L~~~~~p~~~~nf~~l~~~--~------~y~~~~f~rvi~~f~iq~Gd~t~-~G~i~i~l~~~~~   71 (232)
                      ++.+ .+++|+|+|+||++.||+||+||++||++  +      +|+++.|||++++|++|+||+.. .|.          
T Consensus         6 di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~----------   75 (164)
T cd01926           6 DITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFTRGNGT----------   75 (164)
T ss_pred             EEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccccCCCEEEEEeCCcEEEcCCccCCCCC----------
Confidence            4445 36899999999999999999999999984  4      79999999999999999998641 111          


Q ss_pred             CCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceE
Q psy8249          72 PKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQF  151 (232)
Q Consensus        72 P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f  151 (232)
                                                              ++.++++..+++|.. .++|+.+|+|+|++.++++++|||
T Consensus        76 ----------------------------------------~~~~~~g~~~~~e~~-~~~h~~~G~lsma~~~~~~~~sqF  114 (164)
T cd01926          76 ----------------------------------------GGKSIYGEKFPDENF-KLKHTGPGLLSMANAGPNTNGSQF  114 (164)
T ss_pred             ----------------------------------------CCCcccCCccCCCCc-cccCCCccEEEeeECCCCCcccEE
Confidence                                                    112233444555543 578888999999999999999999


Q ss_pred             EeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeee
Q psy8249         152 FITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHA  202 (232)
Q Consensus       152 ~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~  202 (232)
                      ||++++.|+||++|+|||+|++|||||++|++++++ +++|+.+|+|.+||
T Consensus       115 fIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~-~~~P~~~i~I~~cG  164 (164)
T cd01926         115 FITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSG-NGKPKKKVVIADCG  164 (164)
T ss_pred             EEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCC-CCCCcCCeEEEECC
Confidence            999999999999999999999999999999999999 99999999999996

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl

>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional

Probab=100.00  E-value=9.6e-40  Score=254.00  Aligned_cols=148  Identities=30%  Similarity=0.573  Sum_probs=122.9

Q ss_pred             EEEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhhhc
Q psy8249           3 VSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALC   82 (232)
Q Consensus         3 v~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~   82 (232)
                      |+|+|++|+|+|+||++.||+|++||++||+.+||+++.||||+++||+|+|+++. |.        .            
T Consensus         2 v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQgGd~~~-~~--------~------------   60 (164)
T PRK10791          2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEP-GM--------K------------   60 (164)
T ss_pred             EEEEEccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEecCcEEEeCCcCC-CC--------C------------
Confidence            67999999999999999999999999999999999999999999999999998531 00        0            


Q ss_pred             cCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccC-CCcccceEEeeccCCCCC
Q psy8249          83 ASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNG-PNTNASQFFITYAAHAHL  161 (232)
Q Consensus        83 ~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~-~~~~~s~f~itl~~~~~l  161 (232)
                             .                        ..++..+++|....+.| .+|+|+|++.+ +++++|||||++.++++|
T Consensus        61 -------~------------------------~~~~~~~~~e~~~~~~~-~~G~lsma~~~~p~s~~SQFfI~~~~~~~l  108 (164)
T PRK10791         61 -------Q------------------------KATKEPIKNEANNGLKN-TRGTLAMARTQAPHSATAQFFINVVDNDFL  108 (164)
T ss_pred             -------c------------------------CCCCCCcCCcccccccC-CCcEEEECCCCCcCCccceEEEEecCchhh
Confidence                   0                        00012233444434444 79999999875 899999999999998877


Q ss_pred             C-------C-CccEEEEEeeccchhhhcccCCCCC----CCCceeeEEEeeeee
Q psy8249         162 D-------L-KYTIFGKVIDGFETLDNLEKLPVNP----NHKPIFFITYAAHAH  203 (232)
Q Consensus       162 d-------~-~~tvfG~VveG~dvl~~I~~~~~~~----~~~P~~~i~I~~~~~  203 (232)
                      |       + +|+|||+|++|||+|++|+++++++    +++|..+|+|..|.+
T Consensus       109 d~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~~~~i  162 (164)
T PRK10791        109 NFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVIIESVTV  162 (164)
T ss_pred             cccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCcCCCeEEEEEEE
Confidence            6       3 7999999999999999999999876    369999999998854

>KOG0415|consensus

Probab=100.00  E-value=2.4e-40  Score=274.07  Aligned_cols=166  Identities=43%  Similarity=0.680  Sum_probs=151.7

Q ss_pred             CEEEEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhh
Q psy8249           1 MSVSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLA   80 (232)
Q Consensus         1 ~~v~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~   80 (232)
                      |+|+|+|++|+++|+||-+++|.+|.|||+||+.+||+.+.||-|+++|.+|.||||..|+..-.+|+...-        
T Consensus         1 MsVlieTtlGDlvIDLf~~erP~~clNFLKLCk~KYYN~clfh~vq~~f~aQTGDPtGtG~GG~si~~~lyG--------   72 (479)
T KOG0415|consen    1 MSVLIETTLGDLVIDLFVKERPRTCLNFLKLCKIKYYNFCLFHTVQRDFTAQTGDPTGTGDGGESIYGVLYG--------   72 (479)
T ss_pred             CcEEEEeecccEEeeeecccCcHHHHHHHHHHhHhhcccceeeeccccceeecCCCCCCCCCcceeeeeccc--------
Confidence            999999999999999999999999999999999999999999999999999999999999876655532210        


Q ss_pred             hccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCC-C
Q psy8249          81 LCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAH-A  159 (232)
Q Consensus        81 l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~-~  159 (232)
                             .                            ....|+.|+.+.++|.+.|++||++++.+..+|||||||+++ .
T Consensus        73 -------~----------------------------q~rffeaE~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLd  117 (479)
T KOG0415|consen   73 -------E----------------------------QARFFEAEFLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLD  117 (479)
T ss_pred             -------c----------------------------cchhhhhhhcccccccccceEEeecCCcccccceEEEEcccccc
Confidence                   0                            023467899999999999999999999999999999999984 7


Q ss_pred             CCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCc
Q psy8249         160 HLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYT  209 (232)
Q Consensus       160 ~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~  209 (232)
                      .||++|+|||+|+||||+|.+|+...++++++|+.+|+|.+.-+||+||.
T Consensus       118 yLDg~htvfGqV~EG~dtl~kiNea~vD~~~rPykdIRI~HTiiLdDPFd  167 (479)
T KOG0415|consen  118 YLDGKHTVFGQVAEGFDTLTKINEAIVDPKNRPYKDIRIKHTIILDDPFD  167 (479)
T ss_pred             ccccccceeeehhhhHHHHHHHHHHhcCCCCCcccceeeeeeEEecCCCC
Confidence            89999999999999999999999999999999999999999999999875

>PTZ00221 cyclophilin; Provisional

Probab=100.00  E-value=1.1e-39  Score=266.20  Aligned_cols=155  Identities=30%  Similarity=0.435  Sum_probs=130.4

Q ss_pred             EEEEEeC-----CeeEEEEeecCCCchhHHhHHHhhhcCc-----------ccceeeeeecce-eEEeeCCCccccccce
Q psy8249           2 SVSLHTD-----VGDIKIELFCEDCPKTCENFLALCASDY-----------YNGCIFHRNIKG-FIVQTGDPTHTGDIKI   64 (232)
Q Consensus         2 ~v~~~t~-----~G~i~i~L~~~~~p~~~~nf~~l~~~~~-----------y~~~~f~rvi~~-f~iq~Gd~t~~G~i~i   64 (232)
                      .|.|+|+     .|+|+|+||.+.||+|++||++||++..           |+++.|||++++ ||||+||+++.|    
T Consensus        54 rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~~g----  129 (249)
T PTZ00221         54 RAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDSFN----  129 (249)
T ss_pred             EEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCCCC----
Confidence            3566665     5679999999999999999999997542           888888888864 788888754211    


Q ss_pred             eccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCC
Q psy8249          65 ELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGP  144 (232)
Q Consensus        65 ~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~  144 (232)
                                                                       .+++|..+++|.. .++|+++|+|+|++.++
T Consensus       130 -------------------------------------------------~s~~G~~f~dE~~-~~~h~~~G~LsMan~Gp  159 (249)
T PTZ00221        130 -------------------------------------------------VSSTGTPIADEGY-RHRHTERGLLTMISEGP  159 (249)
T ss_pred             -------------------------------------------------ccCCCCcccCccc-cccCCCCCEEEeCcCCC
Confidence                                                             1223445666654 57888999999999999


Q ss_pred             CcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCcc
Q psy8249         145 NTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYTI  210 (232)
Q Consensus       145 ~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~~  210 (232)
                      ++++||||||+.++|+||++|+|||+|++|||+|++|++++++.+++|..+|+|.+|++|+++-..
T Consensus       160 ntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~~grP~~~V~I~~Cgvl~~~~p~  225 (249)
T PTZ00221        160 HTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVGRPLLPVTVSFCGALTGEKPP  225 (249)
T ss_pred             CCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCCCCCCCCCeEEEECeEecCCCCC
Confidence            999999999999999999999999999999999999999999889999999999999999986443

>PTZ00060 cyclophilin; Provisional

Probab=100.00  E-value=1.3e-39  Score=257.80  Aligned_cols=151  Identities=46%  Similarity=0.718  Sum_probs=127.5

Q ss_pred             EEEE-EeCCeeEEEEeecCCCchhHHhHHHhhh---------cCcccceeeeeecceeEEeeCCCcc-ccccceeccccC
Q psy8249           2 SVSL-HTDVGDIKIELFCEDCPKTCENFLALCA---------SDYYNGCIFHRNIKGFIVQTGDPTH-TGDIKIELFCED   70 (232)
Q Consensus         2 ~v~~-~t~~G~i~i~L~~~~~p~~~~nf~~l~~---------~~~y~~~~f~rvi~~f~iq~Gd~t~-~G~i~i~l~~~~   70 (232)
                      .+.+ .|+.|+|+|+||.+.||+|++||++||+         .++|+++.|||++++|++|+||++. .|.         
T Consensus        21 di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g~---------   91 (183)
T PTZ00060         21 DISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIPQFMCQGGDITNHNGT---------   91 (183)
T ss_pred             EEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccccCCeEEEEEcCCCeEEeCCccCCCCC---------
Confidence            4455 4578999999999999999999999996         5689999999999999999998652 111         


Q ss_pred             CCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccce
Q psy8249          71 CPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQ  150 (232)
Q Consensus        71 ~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~  150 (232)
                                                               ++.++++..+++|.. .+.|+.+|+++|++.++++++||
T Consensus        92 -----------------------------------------~g~~~~g~~~~~e~~-~~~h~~~G~lsma~~g~~~~~sq  129 (183)
T PTZ00060         92 -----------------------------------------GGESIYGRKFTDENF-KLKHDQPGLLSMANAGPNTNGSQ  129 (183)
T ss_pred             -----------------------------------------CCCcccccccCCccc-cccCCCCCEEEeccCCCCCCcce
Confidence                                                     112233444455533 56788899999999999999999


Q ss_pred             EEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeec
Q psy8249         151 FFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHL  204 (232)
Q Consensus       151 f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~l  204 (232)
                      |||++++.|+||++|+|||+|++|||||++|++.++. +++|..+|+|.+|++|
T Consensus       130 FfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~-~~~P~~~v~I~~cg~~  182 (183)
T PTZ00060        130 FFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQ-SGYPKKPVVVTDCGEL  182 (183)
T ss_pred             EEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCCC-CCCCcCCeEEEEeEEc
Confidence            9999999999999999999999999999999998875 7899999999999987

>KOG0879|consensus

Probab=100.00  E-value=1.1e-39  Score=236.14  Aligned_cols=156  Identities=42%  Similarity=0.694  Sum_probs=147.7

Q ss_pred             eeEEeeCCCccccccceeccccCCCCcchhhhhhccCCC--------CCCceeEEeecCcEEEcCCCC-CCCCCCCccCC
Q psy8249          48 GFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY--------YNGCIFHRNIKGFIVQTGDPT-HTGKGGNSIWG  118 (232)
Q Consensus        48 ~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~--------y~g~~~~rv~~~~~vq~G~~~-~~~~~~~~~~~  118 (232)
                      .|+....+....|++.++|+.+..|+|++||++.|++.+        |+++.|||++++|||||||.. +.+++..++|+
T Consensus        13 VF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGtG~~sIy~   92 (177)
T KOG0879|consen   13 VFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGTGVASIYG   92 (177)
T ss_pred             EEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhheeccCceecCCCceEEEEcC
Confidence            477777778899999999999999999999999999875        999999999999999999976 56788899999


Q ss_pred             CCCcccccccccccccceEEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEE
Q psy8249         119 KKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITY  198 (232)
Q Consensus       119 ~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I  198 (232)
                      .++++|+. .++|+.+|++|||++++++++.|||||...+.+||++|+|||+|++|+.++++|+++++..+++|+.++.|
T Consensus        93 ~~F~DENF-tlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~NnkPKl~v~i  171 (177)
T KOG0879|consen   93 STFPDENF-TLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNNKPKLPVVI  171 (177)
T ss_pred             CCCCCcce-eeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCCCCCCcEEE
Confidence            99999998 89999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeec
Q psy8249         199 AAHAHL  204 (232)
Q Consensus       199 ~~~~~l  204 (232)
                      ..|+.+
T Consensus       172 ~qCGem  177 (177)
T KOG0879|consen  172 VQCGEM  177 (177)
T ss_pred             eecccC
Confidence            999853

>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E

Probab=100.00  E-value=1.9e-38  Score=245.08  Aligned_cols=144  Identities=33%  Similarity=0.565  Sum_probs=119.7

Q ss_pred             EEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhhhcc
Q psy8249           4 SLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCA   83 (232)
Q Consensus         4 ~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~   83 (232)
                      .|+|+.|+|+|+||++.||+|++||++||+.+||+++.||||+++||+|+|+++..+.-                     
T Consensus         1 ~l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQ~Gd~~~~~~~---------------------   59 (155)
T cd01920           1 EFQTSLGDIVVELYDDKAPITVENFLAYVRKGFYDNTIFHRVISGFVIQGGGFTPDLAQ---------------------   59 (155)
T ss_pred             CcEecceeEEEEEeCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCcEEEeCCCCCCCCc---------------------
Confidence            37999999999999999999999999999999999999999999999999987632210                     


Q ss_pred             CCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccC-CCcccceEEeeccCCCCCC
Q psy8249          84 SDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNG-PNTNASQFFITYAAHAHLD  162 (232)
Q Consensus        84 ~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~-~~~~~s~f~itl~~~~~ld  162 (232)
                       ..                              ++..+.+|.... .++.+|+|+||+.+ +++++|||||+++++|+||
T Consensus        60 -~~------------------------------~~~~~~~e~~~~-~~~~~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld  107 (155)
T cd01920          60 -KE------------------------------TLKPIKNEAGNG-LSNTRGTIAMARTNAPDSATSQFFINLKDNASLD  107 (155)
T ss_pred             -cc------------------------------cCCcccCccccc-ccCCceEEEECCCCCCCCccceEEEECCCchhcC
Confidence             00                              011222333322 34589999999865 8999999999999999999


Q ss_pred             C-----CccEEEEEeeccchhhhcccCCCCCC----CCceeeEEEee
Q psy8249         163 L-----KYTIFGKVIDGFETLDNLEKLPVNPN----HKPIFFITYAA  200 (232)
Q Consensus       163 ~-----~~tvfG~VveG~dvl~~I~~~~~~~~----~~P~~~i~I~~  200 (232)
                      +     +|+|||+|++|||||++|++++++++    ++|..+|+|..
T Consensus       108 ~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~v~i~~  154 (155)
T cd01920         108 YQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDVIIES  154 (155)
T ss_pred             CcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCCeEEEE
Confidence            5     79999999999999999999999874    68988888864

coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.

>KOG0885|consensus

Probab=100.00  E-value=3.7e-38  Score=262.60  Aligned_cols=165  Identities=41%  Similarity=0.733  Sum_probs=152.8

Q ss_pred             EEEEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhhh
Q psy8249           2 SVSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLAL   81 (232)
Q Consensus         2 ~v~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l   81 (232)
                      .|+++|+.|+|.|+||+++||++|.||++||-.|||+++.|||++++|++|||||+.                       
T Consensus        14 kvil~TT~G~I~iELW~kE~P~acrnFiqKOGegyy~nt~fhrlvp~f~~Qggdp~~-----------------------   70 (439)
T KOG0885|consen   14 KVILKTTKGDIDIELWAKECPKACRNFIQLCLEGYYDNTEFHRLVPGFLVQGGDPTG-----------------------   70 (439)
T ss_pred             eEEEEeccCceeeeehhhhhhHHHHHHHHHHHhccccCceeeeeccchhcccCCCCC-----------------------
Confidence            589999999999999999999999999999999999999999999999999999863                       


Q ss_pred             ccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCCC
Q psy8249          82 CASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHL  161 (232)
Q Consensus        82 ~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~l  161 (232)
                                                 ++.++.||||..+.+|.+++|+.+++|+++||+.+.+.++||||+||+++|+|
T Consensus        71 ---------------------------~gtGgesiyg~~fadE~h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el  123 (439)
T KOG0885|consen   71 ---------------------------TGTGGESIYGRPFADEFHPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPEL  123 (439)
T ss_pred             ---------------------------CCCCccccccccchhhcCcceeeeccceeeecccCCCCCCceEEEEecCChHh
Confidence                                       34567789999999999999999999999999999999999999999999999


Q ss_pred             CCCccEEEEEe-eccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCc-ccceeec
Q psy8249         162 DLKYTIFGKVI-DGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYT-IFGKVID  216 (232)
Q Consensus       162 d~~~tvfG~Vv-eG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~-~fg~V~~  216 (232)
                      ++++++||+|+ +-.-.+-+|..+.++.+.||..+-.|.+|.++..+|. +++|++.
T Consensus       124 ~nk~tiFGKVtGdtIYn~lri~e~eida~~Rp~~p~kI~s~EV~~npFdDI~pr~~r  180 (439)
T KOG0885|consen  124 NNKHTIFGKVTGDTIYNMLRISEVEIDADDRPVDPPKIKSVEVLINPFDDIKPRELR  180 (439)
T ss_pred             cccCceeeeecchhhhhhhhhcccccccccCCCCccceeeeEeecCchhhcchhhhh
Confidence            99999999999 6788889999999999999999999999999999875 5565543

>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases

Probab=100.00  E-value=6.3e-37  Score=235.06  Aligned_cols=145  Identities=49%  Similarity=0.746  Sum_probs=128.6

Q ss_pred             EEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhhhcc
Q psy8249           4 SLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCA   83 (232)
Q Consensus         4 ~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~   83 (232)
                      .++|+.|+|+|+||++.||++++||++||+.++|+++.|||++++|++|+|+++..+...                    
T Consensus         1 ~~~T~~G~i~IeL~~~~~P~~~~nF~~l~~~~~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~--------------------   60 (146)
T cd00317           1 TLDTTKGRIVIELYGDEAPKTVENFLSLARGGFYDGTTFHRVIPGFMIQGGDPTGTGGGG--------------------   60 (146)
T ss_pred             CeEeccCcEEEEEcCCCChHHHHHHHHHHhcCCcCCCEEEEEeCCCeEEECCCCCCCCCC--------------------
Confidence            379999999999999999999999999999999999999999999999999976332110                    


Q ss_pred             CCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCCCCC
Q psy8249          84 SDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDL  163 (232)
Q Consensus        84 ~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~  163 (232)
                                                     +.++..+++|..+...|+++|+++|++.+++++++||||++.+.++||+
T Consensus        61 -------------------------------~~~~~~~~~E~~~~~~~~~~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~  109 (146)
T cd00317          61 -------------------------------SGPGYKFPDENFPLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDG  109 (146)
T ss_pred             -------------------------------CcCCCccCCccccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCC
Confidence                                           1113456667776665789999999999999999999999999999999


Q ss_pred             CccEEEEEeeccchhhhcccCCCCCCCCceeeEEEe
Q psy8249         164 KYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYA  199 (232)
Q Consensus       164 ~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~  199 (232)
                      +|+|||+|++||++|++|++.+++++++|..+|+|.
T Consensus       110 ~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~  145 (146)
T cd00317         110 KHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTIS  145 (146)
T ss_pred             CceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEe
Confidence            999999999999999999999999999999999986

This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP

>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms

Probab=100.00  E-value=7e-36  Score=231.43  Aligned_cols=151  Identities=46%  Similarity=0.810  Sum_probs=127.7

Q ss_pred             EEEEeC-CeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhhh
Q psy8249           3 VSLHTD-VGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLAL   81 (232)
Q Consensus         3 v~~~t~-~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l   81 (232)
                      |.|+|+ +|+|+|+||++.||++++||++||+.++|+++.|||+++++++|+|+++..+.     ....           
T Consensus         2 ~~i~t~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~ri~~~~~i~~G~~~~~~~-----~~~~-----------   65 (155)
T PF00160_consen    2 VDIETSGLGRIVIELFGDEAPKTVENFLRLCTSGFYDGTKFHRIIPNFVIQGGDPTGNGG-----YGRE-----------   65 (155)
T ss_dssp             EEEEETTEEEEEEEEETTTSHHHHHHHHHHHHTTSSTTEBEEEEETTTEEEESSTTTSSS-----STSE-----------
T ss_pred             EEEEeCCccCEEEEEeCCCCcHHHHhhehhhcccccCCceeecccccceeeeeeccCCCC-----cccc-----------
Confidence            689997 99999999999999999999999999999999999999999999999764432     0000           


Q ss_pred             ccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccC--CCcccceEEeeccCCC
Q psy8249          82 CASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNG--PNTNASQFFITYAAHA  159 (232)
Q Consensus        82 ~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~--~~~~~s~f~itl~~~~  159 (232)
                               .                       ...+..+++|......++.+|+++|++.+  +++++|||||++.+.|
T Consensus        66 ---------~-----------------------~~~~~~~~~E~~~~~~~~~~G~v~~~~~~~~~~~~~sqF~I~l~~~~  113 (155)
T PF00160_consen   66 ---------D-----------------------STGGEPIPDEFNPSLLKHRRGLVSMARSGKDPNSNGSQFFITLSDAP  113 (155)
T ss_dssp             ---------E-----------------------BTTBSCBSSSGBTTSSSSSTTEEEEEBSSSSTTEBSSEEEEESSCGG
T ss_pred             ---------c-----------------------ccCccccccccccccccccceeeeecccccCCCCCCceEEeeccCCC
Confidence                     0                       00122355666433344499999999875  7889999999999999


Q ss_pred             CCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeee
Q psy8249         160 HLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAH  203 (232)
Q Consensus       160 ~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~  203 (232)
                      +||++|+|||+|++||++|++|++.++++  +|..+|+|.+|++
T Consensus       114 ~ld~~~~vfG~V~~G~~vl~~i~~~~~~~--~p~~~v~I~~cgv  155 (155)
T PF00160_consen  114 HLDGKYTVFGRVIEGMDVLDKIEAGPTDE--RPKQDVTISSCGV  155 (155)
T ss_dssp             GGTTTSEEEEEEEEHHHHHHHHHTSBBTT--EBSSTEEEEEEEE
T ss_pred             ccccceeeeeEEehhHHHHHHHHCCCCCC--ccCCCeEEEEeEC
Confidence            99999999999999999999999998887  9999999999985

It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....

>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40

Probab=100.00  E-value=7.8e-36  Score=234.48  Aligned_cols=150  Identities=35%  Similarity=0.507  Sum_probs=110.4

Q ss_pred             EeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhhhccCC
Q psy8249           6 HTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASD   85 (232)
Q Consensus         6 ~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~~~   85 (232)
                      .|++|+|+|+||++.||.||+||++||+.+||+++.||||+++||+|+||++..+....      .|.+.. +       
T Consensus         3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRVi~~fviQgGdp~~~~~~~~------~~~~~~-~-------   68 (176)
T cd01924           3 ATDNGTITIVLDGYNAPVTAGNFVDLVERGFYDGMEFHRVEGGFVVQTGDPQGKNPGFP------DPETGK-S-------   68 (176)
T ss_pred             ccccceEEEEEcCCCCCHHHHHHHHHHHhCCcCCCEEEEecCCcEEEecCCCCCCCCcc------cccccc-c-------
Confidence            58999999999999999999999999999999999999999999999999876543311      010000 0       


Q ss_pred             CCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCc----ccccccccccccceEEecccC--CCcccceEEeecc---
Q psy8249          86 YYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFE----DEFKETLKHSERGIVSMANNG--PNTNASQFFITYA---  156 (232)
Q Consensus        86 ~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~----~e~~~~l~~~~~g~v~~~~~~--~~~~~s~f~itl~---  156 (232)
                              |.+|--+ +.      ...+.++++..+.    .+..+.+.|+.+|+++|++++  +++++|||||+++   
T Consensus        69 --------~~~p~e~-~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~  133 (176)
T cd01924          69 --------RTIPLEI-KP------EGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNE  133 (176)
T ss_pred             --------cccccee-cc------cCCCCCccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEecccc
Confidence                    0001000 00      0001112222111    122335677799999999987  6999999999998   


Q ss_pred             ----CCCCCCCCccEEEEEeeccchhhhcccC
Q psy8249         157 ----AHAHLDLKYTIFGKVIDGFETLDNLEKL  184 (232)
Q Consensus       157 ----~~~~ld~~~tvfG~VveG~dvl~~I~~~  184 (232)
                          +.|+||++|+|||+|++|||||++|+..
T Consensus       134 ~~~~~~~~Ldg~ytVFG~VveG~dvl~~I~~g  165 (176)
T cd01924         134 LTPSRNNVLDGRYAVFGYVTDGLDILRELKVG  165 (176)
T ss_pred             ccCCCCCccCCCceEEEEEecCHHHHHhhcCC
Confidence                7899999999999999999999999764

Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.

>KOG0111|consensus

Probab=100.00  E-value=4.3e-35  Score=229.09  Aligned_cols=156  Identities=38%  Similarity=0.579  Sum_probs=142.6

Q ss_pred             ceeEEeeCCCccccccceeccccCCCCcchhhhhhccCC---CCCCceeEEeecCcEEEcCCCC-CCCCCCCccCCCCCc
Q psy8249          47 KGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASD---YYNGCIFHRNIKGFIVQTGDPT-HTGKGGNSIWGKKFE  122 (232)
Q Consensus        47 ~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~~~---~y~g~~~~rv~~~~~vq~G~~~-~~~~~~~~~~~~~~~  122 (232)
                      +.|+..-......|++++.|..+..|.+++||..||++.   -|.|+.|||++|.||+||||.+ ++++++.|+||+++.
T Consensus       138 qv~~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfgykgssfhriip~fmcqggdftn~ngtggksiygkkfd  217 (298)
T KOG0111|consen  138 QVYHDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFGYKGSSFHRIIPKFMCQGGDFTNGNGTGGKSIYGKKFD  217 (298)
T ss_pred             HhhhheeecccccceEEEeecccCChhhhhhhhhhccccCccCccccchhhhhhhhhccCCccccCCCCCCccccccccc
Confidence            334433333456799999999999999999999999985   3999999999999999999998 678999999999999


Q ss_pred             ccccccccccccceEEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeee
Q psy8249         123 DEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHA  202 (232)
Q Consensus       123 ~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~  202 (232)
                      +|+. .|+|+.+|++||+++++++++|||||++....|||++|+|||.|++||+|++++++..+. .++|...|.|..|+
T Consensus       218 denf-~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgsk-sgkp~qkv~i~~cg  295 (298)
T KOG0111|consen  218 DENF-TLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGSK-SGKPQQKVKIVECG  295 (298)
T ss_pred             ccce-eeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhccCC-CCCcceEEEEEecc
Confidence            9998 899999999999999999999999999999999999999999999999999999999776 89999999999998


Q ss_pred             ec
Q psy8249         203 HL  204 (232)
Q Consensus       203 ~l  204 (232)
                      .+
T Consensus       296 e~  297 (298)
T KOG0111|consen  296 EI  297 (298)
T ss_pred             cc
Confidence            76

>KOG0865|consensus

Probab=99.95  E-value=1.7e-28  Score=188.78  Aligned_cols=156  Identities=47%  Similarity=0.711  Sum_probs=141.3

Q ss_pred             ceeEEeeCCCccccccceeccccCCCCcchhhhhhccCC---CCCCceeEE---eecCcEEEcCCCC-CCCCCCCccCCC
Q psy8249          47 KGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASD---YYNGCIFHR---NIKGFIVQTGDPT-HTGKGGNSIWGK  119 (232)
Q Consensus        47 ~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~~~---~y~g~~~~r---v~~~~~vq~G~~~-~~~~~~~~~~~~  119 (232)
                      +-|+.+.-+.+..|++.++|+.+..|++++||.+||++.   -|.++.|||   ..+++|+|+||.+ ++++++.|+|+.
T Consensus         5 ~vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~yk~s~fhr~~~~~~~fm~qggDft~hngtggkSiy~e   84 (167)
T KOG0865|consen    5 TVFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFGYKGSCFHRLIPIIPGFMCQGGDFTCHNGTGGKSIYGE   84 (167)
T ss_pred             eeeeeeeecCccccccceecccccCcchHhhhhhcccCCCccccccchhhhccccccceeeccCcccccCCccceEeccc
Confidence            446677777889999999999999999999999999964   389999999   3457999999987 678999999999


Q ss_pred             CCcccccccccccccceEEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEe
Q psy8249         120 KFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYA  199 (232)
Q Consensus       120 ~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~  199 (232)
                      ++++|+. .++|..+|+++||+.+|++++|||||++....|||++|+|||+|.+||+++++|+..... ++++...|+|.
T Consensus        85 kF~DenF-ilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~gs~-~gk~~~~i~i~  162 (167)
T KOG0865|consen   85 KFDDENF-ILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERFGSR-NGKTSKKITIA  162 (167)
T ss_pred             ccCCcCc-EEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhccCCc-CCcccccEEEe
Confidence            9999988 889999999999999999999999999999999999999999999999999999996544 88999999999


Q ss_pred             eeeec
Q psy8249         200 AHAHL  204 (232)
Q Consensus       200 ~~~~l  204 (232)
                      +|+.|
T Consensus       163 dcg~l  167 (167)
T KOG0865|consen  163 DCGQL  167 (167)
T ss_pred             cCCcC
Confidence            99875

>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)

Probab=99.91  E-value=2.6e-24  Score=168.12  Aligned_cols=139  Identities=37%  Similarity=0.665  Sum_probs=100.5

Q ss_pred             ccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccce
Q psy8249          57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGI  136 (232)
Q Consensus        57 t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~  136 (232)
                      |+.|+++++|+.+.+|++++||++||+.++|+++.|||+++++++|+|++..++.++.++++...... .....      
T Consensus         4 Ts~G~i~ieL~~~~aP~t~~nF~~L~~~~~Y~g~~fhrvi~~f~iQgGd~~~~g~~~~~~~~~~~~~~-~~~~~------   76 (166)
T cd01921           4 TTLGDLVIDLFTDECPLACLNFLKLCKLKYYNFCLFYNVQKDFIAQTGDPTGTGAGGESIYSQLYGRQ-ARFFE------   76 (166)
T ss_pred             eccCCEEEEEcCCCCCHHHHHHHHHHhcCCcCCCEEEEEeCCceEEECCcCCCCCCCccccccccccc-CcccC------
Confidence            78999999999999999999999999999999999999999999999998876666655543211100 00000      


Q ss_pred             EEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEee-eeecCCCCcccceee
Q psy8249         137 VSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAA-HAHLDLKYTIFGKVI  215 (232)
Q Consensus       137 v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~-~~~ld~~~~~fg~V~  215 (232)
                                  .++      .+.  ..|..-|.|.        +++...+ .+.-.++|+..+ +++||+.|++||||+
T Consensus        77 ------------~e~------~~~--~~h~~~G~l~--------ma~~~~~-~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi  127 (166)
T cd01921          77 ------------PEI------LPL--LKHSKKGTVS--------MVNAGDN-LNGSQFYITLGENLDYLDGKHTVFGQVV  127 (166)
T ss_pred             ------------ccc------CCc--cccCCceEEE--------EeECCCC-CccceEEEEcCCCCcccCCCccEEEEEE
Confidence                        000      000  0122335552        2332222 345567888864 899999999999999


Q ss_pred             cchhhhhhhccCcCCC
Q psy8249         216 DGLETLDNLEKLPVNP  231 (232)
Q Consensus       216 ~g~~v~~~i~~~~~~~  231 (232)
                      +|||||++|+++++++
T Consensus       128 ~G~dvv~~I~~~~~~~  143 (166)
T cd01921         128 EGFDVLEKINDAIVDD  143 (166)
T ss_pred             cCHHHHHHHHcCCCCC
Confidence            9999999999999875

This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.

>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=1.6e-23  Score=160.05  Aligned_cols=133  Identities=34%  Similarity=0.584  Sum_probs=99.7

Q ss_pred             CccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccc
Q psy8249          56 PTHTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERG  135 (232)
Q Consensus        56 ~t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g  135 (232)
                      .|+.|+|+++||++.+|+|++||++||+.++|+|+.|||++++||+||||+..+     ...+..-     ...      
T Consensus         5 ~t~~G~I~ieL~~~~aP~Tv~NF~~l~~~g~Ydg~~FHRVi~~FmiQgGd~~~~-----~g~gg~~-----~~f------   68 (158)
T COG0652           5 ETNKGDITIELYPDKAPKTVANFLQLVKEGFYDGTIFHRVIPGFMIQGGDPTGG-----DGTGGPG-----PPF------   68 (158)
T ss_pred             eccCCCEEEEECCCcCcHHHHHHHHHHHcCCCCCceEEEeecCceeecCCCCCC-----CCCCCCC-----CCC------
Confidence            478999999999999999999999999999999999999999999999998752     0001110     000      


Q ss_pred             eEEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCcccceee
Q psy8249         136 IVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYTIFGKVI  215 (232)
Q Consensus       136 ~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~~fg~V~  215 (232)
                              ++    +++-.+.    +.   -.-|.+        +|++......+...++|...+.++||+.|+|||+|+
T Consensus        69 --------~~----E~~~~~~----~~---~~~G~l--------sMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv  121 (158)
T COG0652          69 --------KD----ENFALNG----DR---HKRGTL--------SMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVV  121 (158)
T ss_pred             --------cc----ccccccc----cc---CCcceE--------eEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEe
Confidence                    11    1110000    00   112333        566666444666779999999999999999999999


Q ss_pred             cchhhhhhhccCcCCC
Q psy8249         216 DGLETLDNLEKLPVNP  231 (232)
Q Consensus       216 ~g~~v~~~i~~~~~~~  231 (232)
                      +||||||+|++..++.
T Consensus       122 ~GmdvvdkI~~~~~~~  137 (158)
T COG0652         122 EGMDVVDKIKNGDTDD  137 (158)
T ss_pred             hhHHHHHHHHcCCccC
Confidence            9999999999988764

>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40

Probab=99.88  E-value=9.5e-23  Score=160.29  Aligned_cols=153  Identities=29%  Similarity=0.468  Sum_probs=98.2

Q ss_pred             CCCccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCc-cCC--CCCccccccccc
Q psy8249          54 GDPTHTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNS-IWG--KKFEDEFKETLK  130 (232)
Q Consensus        54 Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~-~~~--~~~~~e~~~~l~  130 (232)
                      |..|+.|+++++|+++.+|+++.||++||+.++|+++.|||+++++++|+|++...+.+... ..+  ..++.|....  
T Consensus         1 ~~~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p~e~~~~--   78 (176)
T cd01924           1 GEATDNGTITIVLDGYNAPVTAGNFVDLVERGFYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPLEIKPE--   78 (176)
T ss_pred             CCccccceEEEEEcCCCCCHHHHHHHHHHHhCCcCCCEEEEecCCcEEEecCCCCCCCCcccccccccccccceeccc--
Confidence            45689999999999999999999999999999999999999999999999998755333210 000  1111111100  


Q ss_pred             ccccceEEecccCCCcccceEEeecc-CCCCCCCCccEEEEEeeccchhhhcccCCC-CCCCCceeeEEEe-------ee
Q psy8249         131 HSERGIVSMANNGPNTNASQFFITYA-AHAHLDLKYTIFGKVIDGFETLDNLEKLPV-NPNHKPIFFITYA-------AH  201 (232)
Q Consensus       131 ~~~~g~v~~~~~~~~~~~s~f~itl~-~~~~ld~~~tvfG~VveG~dvl~~I~~~~~-~~~~~P~~~i~I~-------~~  201 (232)
                        ..+       .+ ..+..|- ..+ +.......+..-|.|        +|++..- ...+.-.++|++.       .+
T Consensus        79 --~~~-------~~-~~~~~~~-~~~~~~~~~~~~~~~~G~l--------aMa~~~~~~ns~~SQFfI~~~~~~~~~~~~  139 (176)
T cd01924          79 --GQK-------QP-VYGKTLE-EAGRYDEQPVLPFNAFGAI--------AMARTEFDPNSASSQFFFLLKDNELTPSRN  139 (176)
T ss_pred             --CCC-------CC-ccCcccc-cccccccccccccCCCCeE--------EEccCCCCCCCccceEEEEeccccccCCCC
Confidence              000       00 0000000 000 000011122233555        3444332 1345567788888       79


Q ss_pred             eecCCCCcccceeecchhhhhhhccC
Q psy8249         202 AHLDLKYTIFGKVIDGLETLDNLEKL  227 (232)
Q Consensus       202 ~~ld~~~~~fg~V~~g~~v~~~i~~~  227 (232)
                      ++||+.|+|||+|++|||||++|+..
T Consensus       140 ~~Ldg~ytVFG~VveG~dvl~~I~~g  165 (176)
T cd01924         140 NVLDGRYAVFGYVTDGLDILRELKVG  165 (176)
T ss_pred             CccCCCceEEEEEecCHHHHHhhcCC
Confidence            99999999999999999999999765

Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.

>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain

Probab=99.88  E-value=1.2e-22  Score=155.77  Aligned_cols=132  Identities=38%  Similarity=0.642  Sum_probs=94.8

Q ss_pred             ccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccce
Q psy8249          57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGI  136 (232)
Q Consensus        57 t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~  136 (232)
                      |+.|+++++||.+.+|++++||++||++++|+++.|||+++++++|+|++...   +.   +..  ......+       
T Consensus         4 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~---g~---g~~--~~~~~~~-------   68 (148)
T cd01927           4 TTKGDIHIRLFPEEAPKTVENFTTHARNGYYNNTIFHRVIKGFMIQTGDPTGD---GT---GGE--SIWGKEF-------   68 (148)
T ss_pred             eccccEEEEEeCCCCcHHHHHHHHHhhcCCcCCcEEEEEcCCcEEEecccCCC---CC---CCC--cccCCcc-------
Confidence            78999999999999999999999999999999999999999999999987521   11   100  0000000       


Q ss_pred             EEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCcccceeec
Q psy8249         137 VSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYTIFGKVID  216 (232)
Q Consensus       137 v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~~fg~V~~  216 (232)
                             ++    ++      .+.+  .|..-|.|.        +++... ..+...++|+..++++||+.|++||+|++
T Consensus        69 -------~~----e~------~~~~--~h~~~G~l~--------ma~~~~-~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~  120 (148)
T cd01927          69 -------ED----EF------SPSL--KHDRPYTLS--------MANAGP-NTNGSQFFITTVATPWLDNKHTVFGRVVK  120 (148)
T ss_pred             -------cc----cc------cccc--CcCCCeEEE--------EeeCCC-CCCCceEEEEcCCCcccCCCceEEEEEEc
Confidence                   00    00      0011  122224442        222222 24456789999999999999999999999


Q ss_pred             chhhhhhhccCcCCC
Q psy8249         217 GLETLDNLEKLPVNP  231 (232)
Q Consensus       217 g~~v~~~i~~~~~~~  231 (232)
                      |||||++|+++++|+
T Consensus       121 G~dvl~~I~~~~~~~  135 (148)
T cd01927         121 GMDVVQRIENVKTDK  135 (148)
T ss_pred             CHHHHHHHHcCCCCC
Confidence            999999999999875

This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.

>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2

Probab=99.87  E-value=2.3e-22  Score=153.75  Aligned_cols=131  Identities=39%  Similarity=0.662  Sum_probs=94.0

Q ss_pred             ccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccce
Q psy8249          57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGI  136 (232)
Q Consensus        57 t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~  136 (232)
                      |+.|+++++||.+.+|++++||++||+.++|+++.|||+++++++|+|++...   +.  .+..+...   .        
T Consensus         4 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~---g~--~~~~~~~~---~--------   67 (146)
T cd01922           4 TTMGEITLELYWNHAPKTCKNFYELAKRGYYNGTIFHRLIKDFMIQGGDPTGT---GR--GGASIYGK---K--------   67 (146)
T ss_pred             eccccEEEEEcCCCCcHHHHHHHHHHhcCCcCCcEEEEEcCCcEEEecccCCC---CC--CcccccCC---C--------
Confidence            78999999999999999999999999999999999999999999999987521   10  00000000   0        


Q ss_pred             EEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCcccceeec
Q psy8249         137 VSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYTIFGKVID  216 (232)
Q Consensus       137 v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~~fg~V~~  216 (232)
                                        +.+.....-.|..-|.|.        +++.. ...+.-.++|+...+++||+.|++||+|++
T Consensus        68 ------------------~~~e~~~~~~h~~~G~l~--------ma~~~-~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~  120 (146)
T cd01922          68 ------------------FEDEIHPELKHTGAGILS--------MANAG-PNTNGSQFFITLAPTPWLDGKHTIFGRVSK  120 (146)
T ss_pred             ------------------cccccccCcCCCCCeEEE--------EeeCC-CCCCccEEEEEcCCCcccCCCCCEEEEEEc
Confidence                              000000001122235542        22222 223455688999999999999999999999


Q ss_pred             chhhhhhhccCcCC
Q psy8249         217 GLETLDNLEKLPVN  230 (232)
Q Consensus       217 g~~v~~~i~~~~~~  230 (232)
                      |||||++|++++++
T Consensus       121 G~dvl~~I~~~~~~  134 (146)
T cd01922         121 GMKVIENMVEVQTQ  134 (146)
T ss_pred             CHHHHHHHHhCCCC
Confidence            99999999999886

These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.

>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like

Probab=99.87  E-value=2.7e-22  Score=154.57  Aligned_cols=132  Identities=64%  Similarity=1.070  Sum_probs=94.8

Q ss_pred             ccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccce
Q psy8249          57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGI  136 (232)
Q Consensus        57 t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~  136 (232)
                      |+.|+++++|+++.+|++++||++||++++|+++.|||+++++++|+|++..+   +.   +..       ..    .|.
T Consensus         7 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~f~iq~Gd~~~~---g~---g~~-------~~----~~~   69 (153)
T cd01928           7 TNLGDIKIELFCDDCPKACENFLALCASGYYNGCIFHRNIKGFMVQTGDPTGT---GK---GGE-------SI----WGK   69 (153)
T ss_pred             EccccEEEEEcCCCCcHHHHHHHHHHhcCccCCcEEEEeCCCCEEEccccCCC---CC---CCC-------cc----CCC
Confidence            78999999999999999999999999999999999999999999999987521   11   100       00    000


Q ss_pred             EEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCcccceeec
Q psy8249         137 VSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYTIFGKVID  216 (232)
Q Consensus       137 v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~~fg~V~~  216 (232)
                           .-++    ++      .+.  ..|..-|.|.        +++...+ .+.-.++|++.++++||+.|++||+|++
T Consensus        70 -----~~~~----e~------~~~--~~~~~~G~v~--------ma~~~~~-~~~SqFfI~~~~~~~Ld~~~tvFG~V~~  123 (153)
T cd01928          70 -----KFED----EF------RET--LKHDSRGVVS--------MANNGPN-TNGSQFFITYAKQPHLDGKYTVFGKVID  123 (153)
T ss_pred             -----cccc----cc------ccC--CCcCCCcEEE--------EeeCCCC-CcccEEEEEeCCCcccCCCceEEEEEEe
Confidence                 0000    00      000  0122234442        2222222 3455789999999999999999999999


Q ss_pred             chhhhhhhccCcCCC
Q psy8249         217 GLETLDNLEKLPVNP  231 (232)
Q Consensus       217 g~~v~~~i~~~~~~~  231 (232)
                      |||||++|+++++|+
T Consensus       124 G~dvl~~I~~~~~~~  138 (153)
T cd01928         124 GFETLDTLEKLPVDK  138 (153)
T ss_pred             CHHHHHHHHcCCCCC
Confidence            999999999999864

Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.

>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E

Probab=99.86  E-value=1.2e-21  Score=151.36  Aligned_cols=130  Identities=32%  Similarity=0.559  Sum_probs=93.7

Q ss_pred             ccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccce
Q psy8249          57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGI  136 (232)
Q Consensus        57 t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~  136 (232)
                      |+.|+++++||++.+|++++||++||+.++|+++.|||+++++++|+|++...        ...  ......+.      
T Consensus         4 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQ~Gd~~~~--------~~~--~~~~~~~~------   67 (155)
T cd01920           4 TSLGDIVVELYDDKAPITVENFLAYVRKGFYDNTIFHRVISGFVIQGGGFTPD--------LAQ--KETLKPIK------   67 (155)
T ss_pred             ecceeEEEEEeCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCcEEEeCCCCCC--------CCc--cccCCccc------
Confidence            78999999999999999999999999999999999999999999999987531        000  00000000      


Q ss_pred             EEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCC-----CCccc
Q psy8249         137 VSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDL-----KYTIF  211 (232)
Q Consensus       137 v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~-----~~~~f  211 (232)
                              +    +        +. ...+-.-|.|.        |++..-...+.-.++|+..++++||.     .|++|
T Consensus        68 --------~----e--------~~-~~~~~~~G~v~--------ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvF  118 (155)
T cd01920          68 --------N----E--------AG-NGLSNTRGTIA--------MARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVF  118 (155)
T ss_pred             --------C----c--------cc-ccccCCceEEE--------ECCCCCCCCccceEEEECCCchhcCCcccCCCccEE
Confidence                    0    0        00 00011225552        22221122445668999999999995     79999


Q ss_pred             ceeecchhhhhhhccCcCCC
Q psy8249         212 GKVIDGLETLDNLEKLPVNP  231 (232)
Q Consensus       212 g~V~~g~~v~~~i~~~~~~~  231 (232)
                      |+|++|||||++|+++++++
T Consensus       119 G~V~eG~dvl~~I~~~~~~~  138 (155)
T cd01920         119 GEVTEGMDVVDKIAGVETYS  138 (155)
T ss_pred             EEEecCHHHHHHHHcCCccC
Confidence            99999999999999999975

coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.

>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain

Probab=99.86  E-value=1.1e-21  Score=152.25  Aligned_cols=132  Identities=41%  Similarity=0.781  Sum_probs=94.1

Q ss_pred             ccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccce
Q psy8249          57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGI  136 (232)
Q Consensus        57 t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~  136 (232)
                      |+.|+++++||++.+|++++||++||+.++|+++.|||+++++++|+|++..+   +.  -+..+...   .+       
T Consensus         6 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~~~iq~Gd~~~~---g~--~~~~~~g~---~~-------   70 (159)
T cd01923           6 TNKGDLNLELHCDKAPKACENFIKLCKKGYYDGTIFHRSIRNFMIQGGDPTGT---GR--GGESIWGK---PF-------   70 (159)
T ss_pred             EccccEEEEEeCCCChHHHHHHHHHHhcCccCCcEEEEEeCCcEEEecccCCC---CC--CCccccCC---cc-------
Confidence            78999999999999999999999999999999999999999999999987421   11  00000000   00       


Q ss_pred             EEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCcccceeec
Q psy8249         137 VSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYTIFGKVID  216 (232)
Q Consensus       137 v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~~fg~V~~  216 (232)
                             ++    ++      .+.  ..|..-|.|.        +.+... ..+.-.++|+...+++||+.|++||+|++
T Consensus        71 -------~~----E~------~~~--~~h~~~G~v~--------ma~~~~-~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~  122 (159)
T cd01923          71 -------KD----EF------KPN--LSHDGRGVLS--------MANSGP-NTNGSQFFITYRSCKHLDGKHTVFGRVVG  122 (159)
T ss_pred             -------Cc----cc------ccC--cCcCCCcEEE--------EeeCCC-CCcccEEEEECCCCcccCCCccEEEEEEc
Confidence                   00    00      000  0122234442        222221 23456688999999999999999999999


Q ss_pred             chhhhhhhccCcCCC
Q psy8249         217 GLETLDNLEKLPVNP  231 (232)
Q Consensus       217 g~~v~~~i~~~~~~~  231 (232)
                      |||||++|+++++++
T Consensus       123 G~~vl~~I~~~~~~~  137 (159)
T cd01923         123 GLETLEAMENVPDPG  137 (159)
T ss_pred             CHHHHHHHHcCCCCC
Confidence            999999999998864

This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.

>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional

Probab=99.85  E-value=3.2e-21  Score=150.06  Aligned_cols=130  Identities=29%  Similarity=0.561  Sum_probs=92.2

Q ss_pred             ccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccce
Q psy8249          57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGI  136 (232)
Q Consensus        57 t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~  136 (232)
                      |+.|+++++||.+.+|++++||++||+.++|+++.|||+++++++|||++..         +.... .         .+ 
T Consensus         6 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQgGd~~~---------~~~~~-~---------~~-   65 (164)
T PRK10791          6 TNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEP---------GMKQK-A---------TK-   65 (164)
T ss_pred             EccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEecCcEEEeCCcCC---------CCCcC-C---------CC-
Confidence            7899999999999999999999999999999999999999999999997531         11000 0         00 


Q ss_pred             EEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecC-------C-CC
Q psy8249         137 VSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLD-------L-KY  208 (232)
Q Consensus       137 v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld-------~-~~  208 (232)
                                  ..|    .+.......+ .-|.|.        +++..-...+.-.++|+..+|.+||       + .|
T Consensus        66 ------------~~~----~~e~~~~~~~-~~G~ls--------ma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~  120 (164)
T PRK10791         66 ------------EPI----KNEANNGLKN-TRGTLA--------MARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGY  120 (164)
T ss_pred             ------------CCc----CCcccccccC-CCcEEE--------ECCCCCcCCccceEEEEecCchhhcccccccCCCCc
Confidence                        000    0000000111 125552        3332212244567889999998886       2 69


Q ss_pred             cccceeecchhhhhhhccCcCCC
Q psy8249         209 TIFGKVIDGLETLDNLEKLPVNP  231 (232)
Q Consensus       209 ~~fg~V~~g~~v~~~i~~~~~~~  231 (232)
                      ++||+|++|||||++|+++++++
T Consensus       121 tvFG~V~eG~dvl~~I~~~~~~~  143 (164)
T PRK10791        121 CVFAEVVEGMDVVDKIKGVATGR  143 (164)
T ss_pred             cEEEEEecCHHHHHHHHcCcCCC
Confidence            99999999999999999999864

>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional

Probab=99.84  E-value=4.6e-21  Score=152.02  Aligned_cols=141  Identities=38%  Similarity=0.603  Sum_probs=98.0

Q ss_pred             eeEEeeCCCccccccceeccccCCCCcchhhhhhccCCC--------CCCceeEEeecCcEEEcCCCCCCCCCCCccCCC
Q psy8249          48 GFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY--------YNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGK  119 (232)
Q Consensus        48 ~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~--------y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~  119 (232)
                      -|+...-+..+.|+++|+||.+.+|++++||++||++++        |+++.|||+++++++|+|++    ..+.   + 
T Consensus        21 v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f~iqgGd~----~~~~---g-   92 (186)
T PLN03149         21 VFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDF----LKGD---G-   92 (186)
T ss_pred             EEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCcEEEcCCc----ccCC---C-
Confidence            366666666789999999999999999999999998754        99999999999999999863    0000   0 


Q ss_pred             CCcccccccccccccceEEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEe
Q psy8249         120 KFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYA  199 (232)
Q Consensus       120 ~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~  199 (232)
                                    .|-.+.       .+..|    .+. .....|..-|.|.        +.+.. ...+...++|++.
T Consensus        93 --------------~g~~~~-------~g~~f----~~e-~~~~~h~~~G~ls--------ma~~g-~~s~~sqFfIt~~  137 (186)
T PLN03149         93 --------------TGCVSI-------YGSKF----EDE-NFIAKHTGPGLLS--------MANSG-PNTNGCQFFITCA  137 (186)
T ss_pred             --------------CCcccc-------cCCcc----CCc-ccccccCCCCEEE--------EeeCC-CCCcccEEEEECC
Confidence                          000000       00000    000 0011122234442        22222 2345677899999


Q ss_pred             eeeecCCCCcccceee-cchhhhhhhccCcCCC
Q psy8249         200 AHAHLDLKYTIFGKVI-DGLETLDNLEKLPVNP  231 (232)
Q Consensus       200 ~~~~ld~~~~~fg~V~-~g~~v~~~i~~~~~~~  231 (232)
                      .+++||+.|++||+|+ +|||||++|+++++++
T Consensus       138 ~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~  170 (186)
T PLN03149        138 KCDWLDNKHVVFGRVLGDGLLVVRKIENVATGP  170 (186)
T ss_pred             CCCccCCCceEEEEEEECcHHHHHHHHcCCCCC
Confidence            9999999999999999 7999999999999964

>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional

Probab=99.84  E-value=6.5e-21  Score=151.56  Aligned_cols=130  Identities=29%  Similarity=0.551  Sum_probs=93.8

Q ss_pred             ccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccce
Q psy8249          57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGI  136 (232)
Q Consensus        57 t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~  136 (232)
                      |+.|+++++||++.+|++++||++||+.++|+++.|||+++++++|+|++...      . +..   .....+.+     
T Consensus        35 T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRvi~~f~iQgG~~~~~------~-~~~---~~~~~~~~-----   99 (190)
T PRK10903         35 TSAGNIELELNSQKAPVSVKNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQ------M-QQK---KPNPPIKN-----   99 (190)
T ss_pred             eccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEeCCceEEeCCcCCC------C-CCC---CCCCcccC-----
Confidence            78999999999999999999999999999999999999999999999976521      0 000   00000000     


Q ss_pred             EEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCC-----CCccc
Q psy8249         137 VSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDL-----KYTIF  211 (232)
Q Consensus       137 v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~-----~~~~f  211 (232)
                                   ++      .+   ..+..-|.|.        +++....+.+.-.++|+...+++||.     .|++|
T Consensus       100 -------------e~------~~---~l~~~~G~la--------ma~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvF  149 (190)
T PRK10903        100 -------------EA------DN---GLRNTRGTIA--------MARTADKDSATSQFFINVADNAFLDHGQRDFGYAVF  149 (190)
T ss_pred             -------------cc------cc---cCcCCCcEEE--------eCCCCCCCCcccEEEEECcCcccccCCccCCCccEE
Confidence                         00      00   0011235552        33222122445678999999999985     89999


Q ss_pred             ceeecchhhhhhhccCcCCC
Q psy8249         212 GKVIDGLETLDNLEKLPVNP  231 (232)
Q Consensus       212 g~V~~g~~v~~~i~~~~~~~  231 (232)
                      |+|++|||||++|+++++++
T Consensus       150 G~V~eG~dvl~~I~~~~~~~  169 (190)
T PRK10903        150 GKVVKGMDVADKISQVPTHD  169 (190)
T ss_pred             EEEecCHHHHHHHHcCCCCC
Confidence            99999999999999999864

>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

Probab=99.84  E-value=2.1e-20  Score=145.88  Aligned_cols=140  Identities=34%  Similarity=0.554  Sum_probs=98.6

Q ss_pred             eeEEeeCCCccccccceeccccCCCCcchhhhhhccC--C------CCCCceeEEeecCcEEEcCCCCCCCCCCCccCCC
Q psy8249          48 GFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCAS--D------YYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGK  119 (232)
Q Consensus        48 ~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~~--~------~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~  119 (232)
                      .|+...-+.++.|+++|+|+.+.+|++++||++||++  +      +|+++.|||+++++++|+|++...  .+.   +.
T Consensus         3 v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~--~g~---~~   77 (164)
T cd01926           3 VFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFTRG--NGT---GG   77 (164)
T ss_pred             EEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccccCCCEEEEEeCCcEEEcCCccCC--CCC---CC
Confidence            3566555668899999999999999999999999984  3      799999999999999999986521  100   00


Q ss_pred             CCcccccccccccccceEEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEe
Q psy8249         120 KFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYA  199 (232)
Q Consensus       120 ~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~  199 (232)
                          +   .+.    |     .        .|    .+. .....|..-|.|.        +++.. .......++|+..
T Consensus        78 ----~---~~~----g-----~--------~~----~~e-~~~~~h~~~G~ls--------ma~~~-~~~~~sqFfIt~~  119 (164)
T cd01926          78 ----K---SIY----G-----E--------KF----PDE-NFKLKHTGPGLLS--------MANAG-PNTNGSQFFITTV  119 (164)
T ss_pred             ----C---ccc----C-----C--------cc----CCC-CccccCCCccEEE--------eeECC-CCCcccEEEEEeC
Confidence                0   000    0     0        00    000 0011222334442        22222 2245577899999


Q ss_pred             eeeecCCCCcccceeecchhhhhhhccCcCC
Q psy8249         200 AHAHLDLKYTIFGKVIDGLETLDNLEKLPVN  230 (232)
Q Consensus       200 ~~~~ld~~~~~fg~V~~g~~v~~~i~~~~~~  230 (232)
                      .+++||+.|++||+|++|||||++|++++++
T Consensus       120 ~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~  150 (164)
T cd01926         120 KTPWLDGKHVVFGKVVEGMDVVKKIENVGSG  150 (164)
T ss_pred             CCCccCCcccEEEEEEEcHHHHHHHHcCCCC
Confidence            9999999999999999999999999999986

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl

>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases

Probab=99.83  E-value=1.3e-20  Score=144.45  Aligned_cols=131  Identities=36%  Similarity=0.587  Sum_probs=93.9

Q ss_pred             ccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccce
Q psy8249          57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGI  136 (232)
Q Consensus        57 t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~  136 (232)
                      |+.|+++|+|+.+.+|++++||++||++++|+++.|||+++++++|+|++...        +.. .......+..     
T Consensus         4 T~~G~i~IeL~~~~~P~~~~nF~~l~~~~~Y~~~~f~rv~~~~~iq~Gd~~~~--------~~~-~~~~~~~~~~-----   69 (146)
T cd00317           4 TTKGRIVIELYGDEAPKTVENFLSLARGGFYDGTTFHRVIPGFMIQGGDPTGT--------GGG-GSGPGYKFPD-----   69 (146)
T ss_pred             eccCcEEEEEcCCCChHHHHHHHHHHhcCCcCCCEEEEEeCCCeEEECCCCCC--------CCC-CCcCCCccCC-----
Confidence            67799999999999999999999999999999999999999999999987531        000 0000000000     


Q ss_pred             EEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCcccceeec
Q psy8249         137 VSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYTIFGKVID  216 (232)
Q Consensus       137 v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~~fg~V~~  216 (232)
                                   +      ..+..  .+..-|.|.        +.+.. +....+.++|+..++++||+.|++||+|++
T Consensus        70 -------------E------~~~~~--~~~~~G~v~--------~~~~~-~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~  119 (146)
T cd00317          70 -------------E------NFPLK--YHHRRGTLS--------MANAG-PNTNGSQFFITTAPTPHLDGKHTVFGKVVE  119 (146)
T ss_pred             -------------c------cccCc--CcCCCcEEE--------EeeCC-CCCcccEEEEECCCCcccCCCceEEEEEeC
Confidence                         0      00000  012224442        11111 124456789999999999999999999999


Q ss_pred             chhhhhhhccCcCCC
Q psy8249         217 GLETLDNLEKLPVNP  231 (232)
Q Consensus       217 g~~v~~~i~~~~~~~  231 (232)
                      |||||++|++.++++
T Consensus       120 G~~vl~~I~~~~~~~  134 (146)
T cd00317         120 GMDVVDKIERGDTDE  134 (146)
T ss_pred             CHHHHHHHHcCCCCC
Confidence            999999999999974

This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP

>PTZ00060 cyclophilin; Provisional

Probab=99.83  E-value=1.8e-20  Score=148.37  Aligned_cols=141  Identities=36%  Similarity=0.530  Sum_probs=98.8

Q ss_pred             ceeEEeeCCCccccccceeccccCCCCcchhhhhhcc---------CCCCCCceeEEeecCcEEEcCCCCCCCCCCCccC
Q psy8249          47 KGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCA---------SDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIW  117 (232)
Q Consensus        47 ~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~---------~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~  117 (232)
                      +-|+....+.++.|+++|+|+.+.+|++++||++||+         ..+|+++.|||++|++++|+|++...  .+.   
T Consensus        17 ~v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~--~g~---   91 (183)
T PTZ00060         17 KVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIPQFMCQGGDITNH--NGT---   91 (183)
T ss_pred             EEEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccccCCeEEEEEcCCCeEEeCCccCC--CCC---
Confidence            4577777777889999999999999999999999997         35899999999999999999986521  110   


Q ss_pred             CCCCcccccccccccccceEEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEE
Q psy8249         118 GKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFIT  197 (232)
Q Consensus       118 ~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~  197 (232)
                      +..       ..    .|.. +    ++    +.         ....|.--|.|.        +.+.. ...+...++|+
T Consensus        92 ~g~-------~~----~g~~-~----~~----e~---------~~~~h~~~G~ls--------ma~~g-~~~~~sqFfIt  133 (183)
T PTZ00060         92 GGE-------SI----YGRK-F----TD----EN---------FKLKHDQPGLLS--------MANAG-PNTNGSQFFIT  133 (183)
T ss_pred             CCC-------cc----cccc-c----CC----cc---------ccccCCCCCEEE--------eccCC-CCCCcceEEEE
Confidence            000       00    0000 0    00    00         001121123332        22222 22456778999


Q ss_pred             EeeeeecCCCCcccceeecchhhhhhhccCcCC
Q psy8249         198 YAAHAHLDLKYTIFGKVIDGLETLDNLEKLPVN  230 (232)
Q Consensus       198 I~~~~~ld~~~~~fg~V~~g~~v~~~i~~~~~~  230 (232)
                      ...+++||+.|++||+|++|||||++|++++++
T Consensus       134 ~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~  166 (183)
T PTZ00060        134 TVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQ  166 (183)
T ss_pred             eCCCcccCCCccEEEEEEccHHHHHHHHccCCC
Confidence            999999999999999999999999999988774

>PTZ00221 cyclophilin; Provisional

Probab=99.83  E-value=2.7e-20  Score=152.40  Aligned_cols=139  Identities=27%  Similarity=0.362  Sum_probs=99.0

Q ss_pred             cceeEEeeCCCccccccceeccccCCCCcchhhhhhccCC-----------CCCCceeEEeecC-cEEEcCCCCCCCCCC
Q psy8249          46 IKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASD-----------YYNGCIFHRNIKG-FIVQTGDPTHTGKGG  113 (232)
Q Consensus        46 i~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~~~-----------~y~g~~~~rv~~~-~~vq~G~~~~~~~~~  113 (232)
                      .+.||...-+....|+++|+||.+.+|++++||++||++.           .|+++.|||++++ +++|+|++.      
T Consensus        53 ~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~------  126 (249)
T PTZ00221         53 CRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELD------  126 (249)
T ss_pred             CEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCC------
Confidence            4568877777788999999999999999999999999853           3999999999986 899998753      


Q ss_pred             CccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCce
Q psy8249         114 NSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPI  193 (232)
Q Consensus       114 ~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~  193 (232)
                       + .+..            ..|        . ...-+.+         ...|.--|.|.        |.+... ..+...
T Consensus       127 -~-~g~s------------~~G--------~-~f~dE~~---------~~~h~~~G~Ls--------Man~Gp-ntngSQ  165 (249)
T PTZ00221        127 -S-FNVS------------STG--------T-PIADEGY---------RHRHTERGLLT--------MISEGP-HTSGSV  165 (249)
T ss_pred             -C-CCcc------------CCC--------C-cccCccc---------cccCCCCCEEE--------eCcCCC-CCccce
Confidence             0 0000            000        0 0000111         01122224442        223222 244567


Q ss_pred             eeEEEeeeeecCCCCcccceeecchhhhhhhccCcCCC
Q psy8249         194 FFITYAAHAHLDLKYTIFGKVIDGLETLDNLEKLPVNP  231 (232)
Q Consensus       194 ~~i~I~~~~~ld~~~~~fg~V~~g~~v~~~i~~~~~~~  231 (232)
                      ++|+...|++||+.|++||+|++|||||++|++++++.
T Consensus       166 FfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~  203 (249)
T PTZ00221        166 FGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDD  203 (249)
T ss_pred             EEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCC
Confidence            89999999999999999999999999999999998864

>KOG0881|consensus

Probab=99.82  E-value=5.3e-21  Score=137.46  Aligned_cols=133  Identities=40%  Similarity=0.661  Sum_probs=102.6

Q ss_pred             ccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccce
Q psy8249          57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGI  136 (232)
Q Consensus        57 t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~  136 (232)
                      |+.|.+.+|||-+.+|++|+||..|++.+||+|..|||++++||+|||||++     .                  .+|=
T Consensus        16 TsmG~i~~ElY~kHaP~TC~NF~eLarrgYYn~v~FHRii~DFmiQGGDPTG-----T------------------GRGG   72 (164)
T KOG0881|consen   16 TSMGKITLELYWKHAPRTCQNFAELARRGYYNGVIFHRIIKDFMIQGGDPTG-----T------------------GRGG   72 (164)
T ss_pred             ecccceehhhhhhcCcHHHHHHHHHHhcccccceeeeehhhhheeecCCCCC-----C------------------CCCc
Confidence            7899999999999999999999999999999999999999999999999873     0                  1111


Q ss_pred             EEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCcccceeec
Q psy8249         137 VSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYTIFGKVID  216 (232)
Q Consensus       137 v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~~fg~V~~  216 (232)
                      .       .-.+++|    .|.-|-|-+|+--|-       | ++++...+ .+...++|++.-..+||+..|+||||..
T Consensus        73 a-------SIYG~kF----~DEi~~dLkhTGAGI-------L-sMANaGPn-TNgSQFFiTLAPt~~LDGKHTIFGRV~~  132 (164)
T KOG0881|consen   73 A-------SIYGDKF----EDEIHSDLKHTGAGI-------L-SMANAGPN-TNGSQFFITLAPTQWLDGKHTIFGRVCS  132 (164)
T ss_pred             c-------ccccchh----hhhhhhhhcccchhh-------h-hhhccCCC-CCCceEEEEecCccccCCcceeehhhhh
Confidence            1       1123333    233344445553232       2 45555555 4455689999999999999999999999


Q ss_pred             chhhhhhhccCcCCCC
Q psy8249         217 GLETLDNLEKLPVNPN  232 (232)
Q Consensus       217 g~~v~~~i~~~~~~~~  232 (232)
                      ||+|+..+..+.||.+
T Consensus       133 Gm~vikr~G~v~Td~~  148 (164)
T KOG0881|consen  133 GMEVIKRMGMVETDNS  148 (164)
T ss_pred             hHHHHHhhcceecCCC
Confidence            9999999999888753

>KOG0884|consensus

Probab=99.81  E-value=1.3e-20  Score=134.69  Aligned_cols=132  Identities=64%  Similarity=1.060  Sum_probs=98.6

Q ss_pred             ccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccce
Q psy8249          57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGI  136 (232)
Q Consensus        57 t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~  136 (232)
                      |..|+|.||+|.+.+|++|++|+++|...+|+++.|||.+++|++|+|++.                       |..+|-
T Consensus         7 t~~gdikiev~~e~tpktce~~l~~~~~~~~n~~~~~~~~~~f~v~~~~~~-----------------------~tgrgg   63 (161)
T KOG0884|consen    7 TDVGDIKIEVFCERTPKTCENFLALCASDYYNGCIFHRNIKGFMVQTGDPT-----------------------HTGRGG   63 (161)
T ss_pred             eccCcEEEEEEecCChhHHHHHHHHhhhhhccceeecCCCCCcEEEeCCCC-----------------------CCCCCC
Confidence            678999999999999999999999999999999999999999999998753                       222221


Q ss_pred             EE-ecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCcccceee
Q psy8249         137 VS-MANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYTIFGKVI  215 (232)
Q Consensus       137 v~-~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~~fg~V~  215 (232)
                      -| |...=.+. -|++           -+|-+=|.|        ++++-..+ .++..++|+-+..+|||-.||+||+|+
T Consensus        64 ~siwg~~fede-~~~~-----------lkh~~rg~v--------smanngp~-tn~sqffity~kq~hldmkytvfgkvi  122 (161)
T KOG0884|consen   64 NSIWGKKFEDE-YSEY-----------LKHNVRGVV--------SMANNGPN-TNGSQFFITYGKQPHLDMKYTVFGKVI  122 (161)
T ss_pred             ccccCCcchHH-HHHH-----------HhhccceeE--------EcccCCCC-CCCceEEEEecCCCccceeEeeeeeec
Confidence            11 11100000 0000           023344544        34444444 566778999999999999999999999


Q ss_pred             cchhhhhhhccCcCCCC
Q psy8249         216 DGLETLDNLEKLPVNPN  232 (232)
Q Consensus       216 ~g~~v~~~i~~~~~~~~  232 (232)
                      +|+|.||.|++.++|++
T Consensus       123 dg~etldele~l~v~~k  139 (161)
T KOG0884|consen  123 DGLETLDELEKLPVNEK  139 (161)
T ss_pred             cchhhHHHHhhcccCcc
Confidence            99999999999999874

>KOG0880|consensus

Probab=99.80  E-value=1.8e-19  Score=139.35  Aligned_cols=140  Identities=32%  Similarity=0.480  Sum_probs=98.9

Q ss_pred             eEEeeCCCccccccceeccccCCCCcchhhhhhccCC----CCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCccc
Q psy8249          49 FIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASD----YYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDE  124 (232)
Q Consensus        49 f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~~~----~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e  124 (232)
                      |+...-.....|+|++.||++.+|+|++||.+||.++    -|.++.|||++|++|||||    .-..+           
T Consensus        43 ~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~gY~gS~FhRVi~nfmIQGG----d~t~g-----------  107 (217)
T KOG0880|consen   43 YFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYGYKGSKFHRVIPNFMIQGG----DFTKG-----------  107 (217)
T ss_pred             EEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcccCCceeeeeecCceeecC----ccccC-----------
Confidence            4443333578999999999999999999999999943    4999999999999999984    00000           


Q ss_pred             ccccccccccceEEecc-cCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeee
Q psy8249         125 FKETLKHSERGIVSMAN-NGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAH  203 (232)
Q Consensus       125 ~~~~l~~~~~g~v~~~~-~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~  203 (232)
                             +..|-.|+-. .=|+.+   |.          -+|.--|++        +|++...|.|+ ..+.|+-..+++
T Consensus       108 -------~gtGg~SIyG~~F~DEN---f~----------LkH~rpG~l--------SMAn~GpDtNG-sQFfItT~~t~w  158 (217)
T KOG0880|consen  108 -------DGTGGKSIYGEKFPDEN---FK----------LKHDRPGRL--------SMANAGPDTNG-SQFFITTVKTPW  158 (217)
T ss_pred             -------CCCCCeEeecCCCCCcc---ce----------eecCCCceE--------eeeccCCCCCC-ceEEEEecCCcc
Confidence                   0112222211 112211   11          112233555        56666666444 457888888999


Q ss_pred             cCCCCcccceeecchhhhhhhccCcCCCC
Q psy8249         204 LDLKYTIFGKVIDGLETLDNLEKLPVNPN  232 (232)
Q Consensus       204 ld~~~~~fg~V~~g~~v~~~i~~~~~~~~  232 (232)
                      ||+...|||+|++|||+|.+|+++.||++
T Consensus       159 LDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~  187 (217)
T KOG0880|consen  159 LDGKHVVFGQVLEGMDVVRKIENVKTDER  187 (217)
T ss_pred             ccCceeEEeeehhhHHHHHHHHhcccCCC
Confidence            99999999999999999999999999864

>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16

Probab=99.77  E-value=7e-19  Score=138.01  Aligned_cols=132  Identities=36%  Similarity=0.640  Sum_probs=93.2

Q ss_pred             ccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccce
Q psy8249          57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGI  136 (232)
Q Consensus        57 t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~  136 (232)
                      |+.|+++++||.+.+|++++||++||+.++|+++.|||+++++++|+|++..   .+.  .+....            |.
T Consensus        12 Ts~G~i~ieL~~~~~P~t~~nF~~L~~~~~Y~~~~f~Rvi~~f~iQgGd~~~---~g~--g~~s~~------------g~   74 (171)
T cd01925          12 TTAGDIDIELWSKEAPKACRNFIQLCLEGYYDNTIFHRVVPGFIIQGGDPTG---TGT--GGESIY------------GE   74 (171)
T ss_pred             EccccEEEEEeCCCChHHHHHHHHHHhcCCCCCCEEEEEcCCcEEEccccCC---CCc--cCcccC------------CC
Confidence            7899999999999999999999999999999999999999999999998641   111  000000            00


Q ss_pred             EEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCcccceeec
Q psy8249         137 VSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYTIFGKVID  216 (232)
Q Consensus       137 v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~~fg~V~~  216 (232)
                                       .+.+..+-...+..-|.|.        +++...+ .+...++|+..++++||+.|++||+|++
T Consensus        75 -----------------~~~~E~~~~~~~~~~G~l~--------ma~~g~~-s~~sqFfIt~~~~~~ldg~~tvFG~V~g  128 (171)
T cd01925          75 -----------------PFKDEFHSRLRFNRRGLVG--------MANAGDD-SNGSQFFFTLDKADELNNKHTLFGKVTG  128 (171)
T ss_pred             -----------------ccCcccccCcCCCCCcEEE--------ECcCCCC-CcccEEEEEcCCCcccCCCceEEEEEEE
Confidence                             0000000000111224442        2222222 4456789999999999999999999994


Q ss_pred             -chhhhhhhccCcCCC
Q psy8249         217 -GLETLDNLEKLPVNP  231 (232)
Q Consensus       217 -g~~v~~~i~~~~~~~  231 (232)
                       ++++|++|+.+++++
T Consensus       129 ~~~~~v~~i~~~~~~~  144 (171)
T cd01925         129 DTIYNLLKLAEVETDK  144 (171)
T ss_pred             CcHHHHHHHhcCCcCC
Confidence             688999999999875

C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.

>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms

Probab=99.77  E-value=1.2e-18  Score=134.78  Aligned_cols=133  Identities=41%  Similarity=0.715  Sum_probs=92.7

Q ss_pred             ccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEE
Q psy8249          59 TGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVS  138 (232)
Q Consensus        59 ~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~  138 (232)
                      .|+++++||++.+|++++||++||+.++|+++.|||+.+++++|+|++...+.     .+.    +   ..   ..+. .
T Consensus         9 ~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~ri~~~~~i~~G~~~~~~~-----~~~----~---~~---~~~~-~   72 (155)
T PF00160_consen    9 LGRIVIELFGDEAPKTVENFLRLCTSGFYDGTKFHRIIPNFVIQGGDPTGNGG-----YGR----E---DS---TGGE-P   72 (155)
T ss_dssp             EEEEEEEEETTTSHHHHHHHHHHHHTTSSTTEBEEEEETTTEEEESSTTTSSS-----STS----E---EB---TTBS-C
T ss_pred             ccCEEEEEeCCCCcHHHHhhehhhcccccCCceeecccccceeeeeeccCCCC-----ccc----c---cc---cCcc-c
Confidence            89999999999999999999999999999999999999999999999764322     000    0   00   0000 0


Q ss_pred             ecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccC-CCCCCCCceeeEEEeeeeecCCCCcccceeecc
Q psy8249         139 MANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKL-PVNPNHKPIFFITYAAHAHLDLKYTIFGKVIDG  217 (232)
Q Consensus       139 ~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~-~~~~~~~P~~~i~I~~~~~ld~~~~~fg~V~~g  217 (232)
                      +.    +.....      ..++      .-|.|.        +.+. .......+.+.|...++++||+.|++||+|++|
T Consensus        73 ~~----~E~~~~------~~~~------~~G~v~--------~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G  128 (155)
T PF00160_consen   73 IP----DEFNPS------LLKH------RRGLVS--------MARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEG  128 (155)
T ss_dssp             BS----SSGBTT------SSSS------STTEEE--------EEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEH
T ss_pred             cc----cccccc------cccc------cceeee--------ecccccCCCCCCceEEeeccCCCccccceeeeeEEehh
Confidence            00    000000      0011      112221        1111 112234678999999999999999999999999


Q ss_pred             hhhhhhhccCcCCC
Q psy8249         218 LETLDNLEKLPVNP  231 (232)
Q Consensus       218 ~~v~~~i~~~~~~~  231 (232)
                      |||||+|+++++++
T Consensus       129 ~~vl~~i~~~~~~~  142 (155)
T PF00160_consen  129 MDVLDKIEAGPTDE  142 (155)
T ss_dssp             HHHHHHHHTSBBTT
T ss_pred             HHHHHHHHCCCCCC
Confidence            99999999998873

It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....

>KOG0415|consensus

Probab=99.75  E-value=7.8e-19  Score=146.43  Aligned_cols=140  Identities=41%  Similarity=0.710  Sum_probs=105.1

Q ss_pred             ccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccce
Q psy8249          57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGI  136 (232)
Q Consensus        57 t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~  136 (232)
                      |+.|+++|.||.+++|.+|.||++||+-.||+.+.||.|..+|++|.|||+++|.++.++|+..+-+..           
T Consensus         7 TtlGDlvIDLf~~erP~~clNFLKLCk~KYYN~clfh~vq~~f~aQTGDPtGtG~GG~si~~~lyG~q~-----------   75 (479)
T KOG0415|consen    7 TTLGDLVIDLFVKERPRTCLNFLKLCKIKYYNFCLFHTVQRDFTAQTGDPTGTGDGGESIYGVLYGEQA-----------   75 (479)
T ss_pred             eecccEEeeeecccCcHHHHHHHHHHhHhhcccceeeeccccceeecCCCCCCCCCcceeeeecccccc-----------
Confidence            789999999999999999999999999999999999999999999999999999999999885432211           


Q ss_pred             EEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEe-eeeecCCCCcccceee
Q psy8249         137 VSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYA-AHAHLDLKYTIFGKVI  215 (232)
Q Consensus       137 v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~-~~~~ld~~~~~fg~V~  215 (232)
                                   .||-   +....+-+|+--|.|.        +.....+ -....++|+++ +-..||+.+||||+|.
T Consensus        76 -------------rffe---aE~~p~l~Hsk~G~vs--------mvs~g~n-~~gSQF~iTlgenLdyLDg~htvfGqV~  130 (479)
T KOG0415|consen   76 -------------RFFE---AEFLPKLKHSKMGTVS--------MVSAGEN-LNGSQFFITLGENLDYLDGKHTVFGQVA  130 (479)
T ss_pred             -------------hhhh---hhhcccccccccceEE--------eecCCcc-cccceEEEEccccccccccccceeeehh
Confidence                         1110   0011122344445552        2222111 22334677775 4489999999999999


Q ss_pred             cchhhhhhhccCcCCCC
Q psy8249         216 DGLETLDNLEKLPVNPN  232 (232)
Q Consensus       216 ~g~~v~~~i~~~~~~~~  232 (232)
                      +|||+|.+||-.-+|++
T Consensus       131 EG~dtl~kiNea~vD~~  147 (479)
T KOG0415|consen  131 EGFDTLTKINEAIVDPK  147 (479)
T ss_pred             hhHHHHHHHHHHhcCCC
Confidence            99999999998777653

>KOG0883|consensus

Probab=99.73  E-value=2.1e-18  Score=145.47  Aligned_cols=145  Identities=37%  Similarity=0.661  Sum_probs=103.1

Q ss_pred             eeecceeEEeeCCCccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCc
Q psy8249          43 HRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFE  122 (232)
Q Consensus        43 ~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~  122 (232)
                      .||-+.-+++  -.|+.|.+.+||+.+.+|++|+||+.||+.+||+|+.|||.+.+||||||||+          |.-  
T Consensus       272 ~rvKkkgyvr--l~Tn~G~lNlELhcd~~P~aceNFI~lc~~gYYnnt~FHRsIrnFmiQGGDPT----------GTG--  337 (518)
T KOG0883|consen  272 TRVKKKGYVR--LVTNHGPLNLELHCDYAPRACENFITLCKNGYYNNTIFHRSIRNFMIQGGDPT----------GTG--  337 (518)
T ss_pred             ccccccceEE--EeccCCceeeEeecCcchHHHHHHHHHHhcccccchHHHHHHHHHeeeCCCCC----------CCC--
Confidence            3444443333  23789999999999999999999999999999999999999999999999986          110  


Q ss_pred             ccccccccccccceEEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeee
Q psy8249         123 DEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHA  202 (232)
Q Consensus       123 ~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~  202 (232)
                                ..|---|...    ..-+|--.|   .     |+       |-.|| +|++.+.+ .+...++|.-..|.
T Consensus       338 ----------~GGeSiWgKp----FkDEf~~~l---~-----H~-------gRGvl-SMANsGpn-TNgSQFFItyrsck  386 (518)
T KOG0883|consen  338 ----------RGGESIWGKP----FKDEFCSNL---S-----HD-------GRGVL-SMANSGPN-TNGSQFFITYRSCK  386 (518)
T ss_pred             ----------CCCccccCCc----cccccCCCC---C-----cC-------CcceE-eeccCCCC-CCCceEEEEecchh
Confidence                      0111111110    001111111   1     22       11122 34454444 55667899999999


Q ss_pred             ecCCCCcccceeecchhhhhhhccCcCCCC
Q psy8249         203 HLDLKYTIFGKVIDGLETLDNLEKLPVNPN  232 (232)
Q Consensus       203 ~ld~~~~~fg~V~~g~~v~~~i~~~~~~~~  232 (232)
                      |||...|+||||+.|+|+|++|+++++|++
T Consensus       387 hLd~KHTIFGrvVGGldtL~amEnve~d~~  416 (518)
T KOG0883|consen  387 HLDNKHTIFGRVVGGLDTLTAMENVETDEK  416 (518)
T ss_pred             hccccceeeeeeeccHHHHHHHhcCCCCCC
Confidence            999999999999999999999999999874

>KOG0882|consensus

Probab=99.67  E-value=3.9e-17  Score=140.33  Aligned_cols=133  Identities=35%  Similarity=0.611  Sum_probs=97.6

Q ss_pred             ccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccce
Q psy8249          57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGI  136 (232)
Q Consensus        57 t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~  136 (232)
                      |+.|+|.+.||++++|++++||..-|+.+||+|..|||++++||||+||     +.+..                 ..|-
T Consensus       411 tt~gdi~~kl~p~ecpktvenf~th~rngyy~~~~fhriik~fmiqtgd-----p~g~g-----------------tgge  468 (558)
T KOG0882|consen  411 TTQGDIHIKLYPEECPKTVENFTTHSRNGYYDNHTFHRIIKGFMIQTGD-----PLGDG-----------------TGGE  468 (558)
T ss_pred             ecccceEEEecccccchhhhhhhccccCccccCcchHHhhhhheeecCC-----CCCCC-----------------CCCc
Confidence            6789999999999999999999999999999999999999999999875     11111                 1111


Q ss_pred             EEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCcccceeec
Q psy8249         137 VSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYTIFGKVID  216 (232)
Q Consensus       137 v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~~fg~V~~  216 (232)
                      --|.+.    .--+|--+|    .-|+-|++            +|++.+.+ .+...++|+..-.++||+..|+||||..
T Consensus       469 siwg~d----fedefh~~l----rhdrpft~------------smanag~n-tngsqffit~~~tpwld~khtvfgrv~~  527 (558)
T KOG0882|consen  469 SIWGKD----FEDEFHPNL----RHDRPFTV------------SMANAGPN-TNGSQFFITTVPTPWLDGKHTVFGRVTA  527 (558)
T ss_pred             cccccc----chhhcCccc----ccCCCceE------------EecccCCC-CCCceEEEEecCccccCCcceeEEEEec
Confidence            111111    001221222    22333442            45666644 4455688999889999999999999999


Q ss_pred             chhhhhhhccCcCCCC
Q psy8249         217 GLETLDNLEKLPVNPN  232 (232)
Q Consensus       217 g~~v~~~i~~~~~~~~  232 (232)
                      |||||+.|+++.||++
T Consensus       528 gm~vvqri~~v~t~k~  543 (558)
T KOG0882|consen  528 GMDVVQRIEQVKTDKY  543 (558)
T ss_pred             chhHHhHhhhcccCcC
Confidence            9999999999999764

>KOG0879|consensus

Probab=99.64  E-value=1.5e-16  Score=115.87  Aligned_cols=72  Identities=39%  Similarity=0.738  Sum_probs=60.5

Q ss_pred             CEEEE-EeCCeeEEEEeecCCCchhHHhHHHhhhcCc--------ccceeeeeecceeEEeeCCCcc-ccccceeccccC
Q psy8249           1 MSVSL-HTDVGDIKIELFCEDCPKTCENFLALCASDY--------YNGCIFHRNIKGFIVQTGDPTH-TGDIKIELFCED   70 (232)
Q Consensus         1 ~~v~~-~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~--------y~~~~f~rvi~~f~iq~Gd~t~-~G~i~i~l~~~~   70 (232)
                      |+|.+ -++.|+|+|+||.+.+|+|.+||.+.|+..|        |.++.||||||+|||||||--+ .|.....+|+..
T Consensus        15 ~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGtG~~sIy~~~   94 (177)
T KOG0879|consen   15 FDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGTGVASIYGST   94 (177)
T ss_pred             EEEeeCCEEcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhheeccCceecCCCceEEEEcCCC
Confidence            45666 4589999999999999999999999999998        9999999999999999998743 455666666654


Q ss_pred             CC
Q psy8249          71 CP   72 (232)
Q Consensus        71 ~P   72 (232)
                      .|
T Consensus        95 F~   96 (177)
T KOG0879|consen   95 FP   96 (177)
T ss_pred             CC
Confidence            33

>KOG0546|consensus

Probab=99.64  E-value=2.7e-16  Score=132.44  Aligned_cols=68  Identities=41%  Similarity=0.698  Sum_probs=56.3

Q ss_pred             EEEE-EeCCeeEEEEeecCCCchhHHhHHHhhhcCc-----------ccceeeeeecceeEEeeCCCcc-ccccceeccc
Q psy8249           2 SVSL-HTDVGDIKIELFCEDCPKTCENFLALCASDY-----------YNGCIFHRNIKGFIVQTGDPTH-TGDIKIELFC   68 (232)
Q Consensus         2 ~v~~-~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~-----------y~~~~f~rvi~~f~iq~Gd~t~-~G~i~i~l~~   68 (232)
                      ++-| .-+.|+|+|+||.+.||+|++||.+||++.-           |.|+.||||||+|||||||.+. .|+....+|+
T Consensus        14 DISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGtGGeSIYG   93 (372)
T KOG0546|consen   14 DISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGTGGESIYG   93 (372)
T ss_pred             EEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCCCcccccc
Confidence            3445 4588999999999999999999999997653           9999999999999999999863 3555555554


Q ss_pred             c
Q psy8249          69 E   69 (232)
Q Consensus        69 ~   69 (232)
                      .
T Consensus        94 ~   94 (372)
T KOG0546|consen   94 E   94 (372)
T ss_pred             c
Confidence            3

>KOG0885|consensus

Probab=99.40  E-value=2.4e-13  Score=114.53  Aligned_cols=129  Identities=34%  Similarity=0.641  Sum_probs=84.5

Q ss_pred             ccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccce
Q psy8249          57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGI  136 (232)
Q Consensus        57 t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~  136 (232)
                      |+.|+|.|+||+.++|.+|+||+.||..+||+|+.|||++|+|++|||+     ..+...-|..                
T Consensus        19 TT~G~I~iELW~kE~P~acrnFiqKOGegyy~nt~fhrlvp~f~~Qggd-----p~~~gtGges----------------   77 (439)
T KOG0885|consen   19 TTKGDIDIELWAKECPKACRNFIQLCLEGYYDNTEFHRLVPGFLVQGGD-----PTGTGTGGES----------------   77 (439)
T ss_pred             eccCceeeeehhhhhhHHHHHHHHHHHhccccCceeeeeccchhcccCC-----CCCCCCCccc----------------
Confidence            7789999999999999999999999999999999999999999999975     1111000111                


Q ss_pred             EEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCcccceeec
Q psy8249         137 VSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYTIFGKVID  216 (232)
Q Consensus       137 v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~~fg~V~~  216 (232)
                                   -++-++.+..|---+|.-=|-|        .|++...+ .+...++++++.|++|++..|+||+|+.
T Consensus        78 -------------iyg~~fadE~h~Rlrf~rrGlv--------gmana~~~-~ngsqFfftl~~~~el~nk~tiFGKVtG  135 (439)
T KOG0885|consen   78 -------------IYGRPFADEFHPRLRFNRRGLV--------GMANAGND-DNGSQFFFTLGDTPELNNKHTIFGKVTG  135 (439)
T ss_pred             -------------cccccchhhcCcceeeecccee--------eecccCCC-CCCceEEEEecCChHhcccCceeeeecc
Confidence                         1111111111111111111222        23343333 4556789999999999999999999986


Q ss_pred             -chhhhhhhccCc
Q psy8249         217 -GLETLDNLEKLP  228 (232)
Q Consensus       217 -g~~v~~~i~~~~  228 (232)
                       -.=.+-+|.-+-
T Consensus       136 dtIYn~lri~e~e  148 (439)
T KOG0885|consen  136 DTIYNMLRISEVE  148 (439)
T ss_pred             hhhhhhhhhcccc
Confidence             333334443333

>KOG0111|consensus

Probab=98.98  E-value=2.5e-10  Score=90.35  Aligned_cols=69  Identities=32%  Similarity=0.552  Sum_probs=57.0

Q ss_pred             EEEE-EeCCeeEEEEeecCCCchhHHhHHHhhhcCc---ccceeeeeecceeEEeeCCCcc-ccccceeccccC
Q psy8249           2 SVSL-HTDVGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPTH-TGDIKIELFCED   70 (232)
Q Consensus         2 ~v~~-~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~---y~~~~f~rvi~~f~iq~Gd~t~-~G~i~i~l~~~~   70 (232)
                      .+.| +-..|+|++.|..+.+|++.+||..||....   |.|+.|||+|+.||.||||-|. .|...-.+|+..
T Consensus       142 ~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfgykgssfhriip~fmcqggdftn~ngtggksiygkk  215 (298)
T KOG0111|consen  142 DIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFGYKGSSFHRIIPKFMCQGGDFTNGNGTGGKSIYGKK  215 (298)
T ss_pred             heeecccccceEEEeecccCChhhhhhhhhhccccCccCccccchhhhhhhhhccCCccccCCCCCCccccccc
Confidence            3455 5678999999999999999999999997654   9999999999999999999875 355555555543

>KOG0865|consensus

Probab=98.09  E-value=1.9e-06  Score=66.80  Aligned_cols=67  Identities=42%  Similarity=0.731  Sum_probs=51.1

Q ss_pred             EEE-EeCCeeEEEEeecCCCchhHHhHHHhhhcCc---ccceeeee---ecceeEEeeCCCcc-ccccceecccc
Q psy8249           3 VSL-HTDVGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHR---NIKGFIVQTGDPTH-TGDIKIELFCE   69 (232)
Q Consensus         3 v~~-~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~---y~~~~f~r---vi~~f~iq~Gd~t~-~G~i~i~l~~~   69 (232)
                      +.+ .+++|++.++|+.+..|+|.+||-+|+....   |.+.+|||   .+++||.|+||.+. .|...-.+|.+
T Consensus        10 ~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~yk~s~fhr~~~~~~~fm~qggDft~hngtggkSiy~e   84 (167)
T KOG0865|consen   10 IAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFGYKGSCFHRLIPIIPGFMCQGGDFTCHNGTGGKSIYGE   84 (167)
T ss_pred             eeecCccccccceecccccCcchHhhhhhcccCCCccccccchhhhccccccceeeccCcccccCCccceEeccc
Confidence            444 4799999999999999999999999997433   89999999   34579999999863 23333333443

>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3

Probab=95.39  E-value=0.046  Score=49.09  Aligned_cols=96  Identities=24%  Similarity=0.403  Sum_probs=60.8

Q ss_pred             cCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCccc
Q psy8249          69 EDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNA  148 (232)
Q Consensus        69 ~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~  148 (232)
                      ..+|.++++|+++.+.+.+.   ..+...-|+           +.....+...+.|+.   ....+|.+.+++.|..  .
T Consensus       209 ~~~p~s~EH~la~~~~G~~~---Vd~~tsTfi-----------~d~~L~g~~~p~En~---~~R~rGtVTVRn~G~G--~  269 (503)
T TIGR03268       209 PNAPVSVEHFLALMEDGTFR---VDYRTSTFI-----------SDDSLRGLDKPEENI---EKRRRGAVTVRNSGVG--E  269 (503)
T ss_pred             CCCChhHHHHHHHHhCCeEE---EeeeecceE-----------ecccccCccCCcccc---CcccceeEEEEeeccC--c
Confidence            56899999999998876431   000001111           122333555666655   3336899999987653  3


Q ss_pred             ceEEeeccCCCCCCCCccEEEEEeeccchhhhcccC
Q psy8249         149 SQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKL  184 (232)
Q Consensus       149 s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~  184 (232)
                      -..||...+.+. .-.|+|+|+|+.|||+++--+..
T Consensus       270 G~VYIYredr~s-s~sHtvVG~V~~GiELid~a~~G  304 (503)
T TIGR03268       270 GRVYIYREDRPS-SLSHNVVGHVTRGIELIDIAQEG  304 (503)
T ss_pred             eeEEEEcCCCCC-CcccceeEEEecceeeeecccCC
Confidence            356887776542 23599999999999998765443

A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.

>PRK00969 hypothetical protein; Provisional

Probab=95.21  E-value=0.056  Score=48.69  Aligned_cols=95  Identities=25%  Similarity=0.431  Sum_probs=60.5

Q ss_pred             cCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCccc
Q psy8249          69 EDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNA  148 (232)
Q Consensus        69 ~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~  148 (232)
                      ..+|.++++|+++.+.+.+.   ..+...-|+           +..+..+...+.|+.   ....+|.+.+++.|...  
T Consensus       212 ~~~p~s~EH~la~~~~G~f~---Vd~~tstfI-----------~d~~L~g~~~p~En~---~~R~~GtVTVRt~G~g~--  272 (508)
T PRK00969        212 PGAPKSVEHFLALLEDGTFE---VDFETSTFI-----------ADDRLQGLKIPEENF---EPRRRGTVTVRTAGVGV--  272 (508)
T ss_pred             CCCCchHHHHHHHHhCCeEE---EeeeecceE-----------eeccccCccCCcccc---CccccceEEEEeeccCc--
Confidence            36799999999998876431   000001111           122333556666665   33368999998876533  


Q ss_pred             ceEEeeccCCCCCCCCccEEEEEeeccchhhhccc
Q psy8249         149 SQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEK  183 (232)
Q Consensus       149 s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~  183 (232)
                      -.-||...+.+. .-.|+|+|+|+.|||+++--.+
T Consensus       273 G~vYIyredr~s-s~sHtvVG~V~~GiELi~~a~~  306 (508)
T PRK00969        273 GKVYIYREDRPS-SLSHTVVGRVTHGIELIDFAKE  306 (508)
T ss_pred             eeEEEECCCCCC-CccceeEEEEecceeeeecccC
Confidence            356887777542 2359999999999999876444

>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=91.93  E-value=0.32  Score=42.54  Aligned_cols=95  Identities=27%  Similarity=0.421  Sum_probs=57.8

Q ss_pred             cCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCccc
Q psy8249          69 EDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNA  148 (232)
Q Consensus        69 ~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~  148 (232)
                      ..+|.++++|++|...+.+.      +-      -  .+++-.+..+....+.+.|+.. +  ..+|.++..+.|.++  
T Consensus       211 ~nsP~saEH~lalmedG~lr------i~------~--~tntfis~~~lq~~~~~~en~d-~--RerG~iTvRn~Gvge--  271 (512)
T COG4070         211 RNSPKSAEHFLALMEDGTLR------ID------V--TTNTFISDDTLQEEKVPEENFD-L--RERGAITVRNVGVGE--  271 (512)
T ss_pred             CCCchhHHHHHHHhhcceEE------EE------E--eccceeeccccccccCChhhhh-h--hhcceEEEEeeeccc--
Confidence            35789999999988765321      00      0  0011112223335566666652 2  268999998876433  


Q ss_pred             ceEEeeccCCCCCCCCccEEEEEeeccchhhhccc
Q psy8249         149 SQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEK  183 (232)
Q Consensus       149 s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~  183 (232)
                      -.-||.-.+.++ .-.|.++|+|.+||++++-...
T Consensus       272 GrvYIyRedR~s-s~sHnvVGrV~eGiELid~a~e  305 (512)
T COG4070         272 GRVYIYREDRPS-SLSHNVVGRVIEGIELIDLAEE  305 (512)
T ss_pred             ceEEEEecCCCC-ccccceeeeeecceEEEEeccc
Confidence            255777666443 2358999999999999876544

>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3

Probab=85.13  E-value=3.2  Score=37.68  Aligned_cols=113  Identities=21%  Similarity=0.300  Sum_probs=55.9

Q ss_pred             ccceeccccCCCCcchhhhhhccCCCCC-C-ceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEE
Q psy8249          61 DIKIELFCEDCPKTCENFLALCASDYYN-G-CIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVS  138 (232)
Q Consensus        61 ~i~i~l~~~~~P~~~~~F~~l~~~~~y~-g-~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~  138 (232)
                      -+.|+||.+.||.++..|+++..-.... | ..+|=..++..+--++         ..+.+.+-+|+.|.-+. .+|.++
T Consensus       376 vi~IeLydd~AP~s~~yFRk~tGL~~~~VG~L~v~F~~~d~~mFk~~---------~~~~k~LiPEN~P~~~V-~ag~Ig  445 (503)
T TIGR03268       376 VIEIELYDDNAPRSVWYFRKFTGLKTKPVGRLPVHFAFKEMIMFKGN---------KELAKGLIPENTPEDKV-EAGVIG  445 (503)
T ss_pred             EEEEEEcccCCchHHHHHHHhcCCcccccceeEEEEEeCCeeEeccC---------chhccccCCCCCCCCcc-ccceEe
Confidence            3778999999999999999886432211 1 2233333443222111         11233444454433332 456666


Q ss_pred             ecccC---CCcccceEEe--eccCC-CCCCCCccEEEEEeeccchhhhcccC
Q psy8249         139 MANNG---PNTNASQFFI--TYAAH-AHLDLKYTIFGKVIDGFETLDNLEKL  184 (232)
Q Consensus       139 ~~~~~---~~~~~s~f~i--tl~~~-~~ld~~~tvfG~VveG~dvl~~I~~~  184 (232)
                      +-|..   ....|-+|-=  ..++. -.+++ --++|+|+++++.|.++...
T Consensus       446 vTN~a~k~~G~IGVRl~d~defGPTGE~F~g-TNIiG~Vv~~~e~Lk~~KeG  496 (503)
T TIGR03268       446 VTNQACKHVGMIGVRLEDSDEFGPTGEPFSG-TNIIGRVVEGMERLKGLKEG  496 (503)
T ss_pred             eechhhhcCceEEEEccCCcccCCCCCCccC-cceEEEecCChhHhcccccC
Confidence            54322   1111111000  00111 11222 22789999999998887653

A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	232
2oju_A	167	X-Ray Structure Of Complex Of Human Cyclophilin J W		2e-61
1xyh_A	161	Crystal Structure Of Recombinant Human Cyclophilin		2e-61
2poe_A	185	Crystal Structure Of Cryptosporidium Parvum Cycloph		1e-45
2b71_A	196	Plasmodium Yoelii Cyclophilin-Like Protein Length =		2e-36
2a2n_A	176	Crystal Structure Of The Peptidylprolyl Isomerase D		2e-36
1zkc_A	197	Crystal Structure Of The Cyclophiln_ring Domain Of		5e-36
2fu0_A	160	Plasmodium Falciparum Cyclophilin Pfe0505w Putative		5e-35
1xwn_A	174	Solution Structure Of Cyclophilin Like 1(Ppil1) And		1e-33
2x7k_A	166	The Crystal Structure Of Ppil1 In Complex With Cycl		1e-33
2k7n_A	203	Solution Structure Of The Ppil1 Bound To A Fragment		1e-33
2hq6_A	185	Structure Of The Cyclophilin_cecyp16-like Domain Of		2e-31
1c5f_A	177	Crystal Structure Of The Cyclophilin-Like Domain Fr		8e-27
3rdd_A	184	Human Cyclophilin A Complexed With An Inhibitor Len		9e-27
2xgy_B	173	Complex Of Rabbit Endogenous Lentivirus (Relik)caps		9e-27
2rmc_A	182	Crystal Structure Of Murine Cyclophilin C Complexed		1e-26
1m9e_A	164	X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-		1e-26
2rma_A	165	Crystal Structures Of Cyclophilin A Complexed With		1e-26
1bck_A	165	Human Cyclophilin A Complexed With 2-Thr Cyclospori		1e-26
5cyh_A	164	Cyclophilin A Complexed With Dipeptide Gly-Pro Leng		1e-26
2haq_A	172	Crystal Structure Of Cyclophilin A From Leishmania		1e-26
1qoi_A	177	U4U6 SNRNP-Specific Cyclophilin Snucyp-20 Length =		2e-26
1qng_A	170	Plasmodium Falciparum Cyclophilin Complexed With Cy		2e-26
3k0o_A	165	Room Temperature Structure Of Cypa Mutant Ser99thr		2e-26
3k0r_A	165	Cryogenic Structure Of Cypa Mutant Arg55lys Length		3e-26
3bt8_A	172	Crystal Structure Of Mutant Cyclophilin (R147a) Fro		3e-26
2x83_B	163	Evolutionary Basis Of Hiv Restriction By The Antire		3e-26
2wlw_A	165	Structure Of The N-Terminal Capsid Domain Of Hiv-2		3e-26
2he9_A	192	Structure Of The Peptidylprolyl Isomerase Domain Of		4e-26
2alf_A	164	Crystal Structure Of Human Cypa Mutant K131a Length		4e-26
2x2c_K	165	Acetyl-Cypa:cyclosporine Complex Length = 165		4e-26
2x2a_A	165	Free Acetyl-Cypa Trigonal Form Length = 165		4e-26
4dgd_A	165	Trimcyp Cyclophilin Domain From Macaca Mulatta: H70		4e-26
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		5e-26
2x25_B	169	Free Acetyl-Cypa Orthorhombic Form Length = 169		5e-26
2esl_A	190	Human Cyclophilin C In Complex With Cyclosporin A L		6e-26
2wfj_A	179	Atomic Resolution Crystal Structure Of The Ppiase D		8e-26
1qnh_A	170	Plasmodium Falciparum Cyclophilin (Double Mutant) C		9e-26
2gw2_A	198	Crystal Structure Of The Peptidyl-Prolyl Isomerase		2e-25
2hqj_A	183	Cyclophilin From Leishmania Major Length = 183		2e-25
4frv_A	185	Crystal Structure Of Mutated Cyclophilin B That Cau		3e-25
4fru_A	185	Crystal Structure Of Horse Wild-Type Cyclophilin B		3e-25
1xo7_A	166	Crystal Structure Of Cyclophilin From Trypanosoma C		5e-25
2cfe_A	162	The 1.5 A Crystal Structure Of The Malassezia Sympo		5e-25
1aws_A	164	Secypa Complexed With Hagpia (Pseudo-Symmetric Mono		8e-25
4i9y_A	167	Structure Of The C-terminal Domain Of Nup358 Length		1e-24
2wfi_A	179	Atomic Resolution Crystal Structure Of The Ppiase D		1e-24
2c3b_A	172	The Crystal Structure Of Aspergillus Fumigatus Cycl		2e-24
1cyn_A	178	Cyclophilin B Complexed With [d-(Cholinylester)ser8		2e-24
3ich_A	188	Crystal Structure Of Cyclophilin B At 1.2 A Resolut		2e-24
2z6w_A	165	Crystal Structure Of Human Cyclophilin D In Complex		3e-24
3r49_A	166	Human Cyclophilin D Complexed With Quinolin-8-Amine		3e-24
2bit_X	165	Crystal Structure Of Human Cyclophilin D At 1.7 A R		3e-24
3qyu_A	164	Crystal Structure Of Human Cyclophilin D At 1.54 A		3e-24
1h0p_A	182	Cyclophilin_5 From C. Elegans Length = 182		6e-24
3k2c_A	193	Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isom		6e-24
2plu_A	186	Crystal Structure Of Cryptosporidium Parvum Cycloph		9e-24
1ist_A	162	Crystal Structure Of Yeast Cyclophilin A, Cpr1 Leng		1e-23
1z81_A	229	Crystal Structure Of Cyclophilin From Plasmodium Yo		4e-23
2ck1_A	172	The Structure Of Oxidised Cyclophilin A From S. Man		5e-23
3bo7_A	201	Crystal Structure Of Toxoplasma Gondii Peptidyl-Pro		5e-23
3bkp_A	232	Crystal Structure Of The Toxoplasma Gondii Cyclophi		5e-23
3pmp_A	164	Crystal Structure Of Cyclophilin A From Moniliophth		7e-23
3o7t_A	164	Crystal Structure Of Cyclophilin A From Moniliophth		7e-23
1dyw_A	173	Biochemical And Structural Characterization Of A Di		1e-22
2r99_A	173	Crystal Structure Of Cyclophilin Abh-Like Domain Of		2e-22
1zmf_A	165	C Domain Of Human Cyclophilin-33(Hcyp33) Length = 1		2e-22
1w74_A	191	X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomer		7e-21
3uch_A	174	Crystal Structure Of A Hypotherical Peptidyl-Prolyl		9e-21
1j2a_A	166	Structure Of E. Coli Cyclophilin B K163t Mutant Len		7e-14
1clh_A	166	Three-Dimensional Solution Structure Of Escherichia		8e-14
2nul_A	164	Peptidylprolyl Isomerase From E. Coli Length = 164		2e-12
1lop_A	164	Cyclophilin A Complexed With Succinyl-Ala-Pro-Ala-P		3e-12
3s6m_A	167	The Structure Of A Peptidyl-Prolyl Cis-Trans Isomer		2e-11
3t1u_A	163	Crystal Structure Of The Complex Of Cyclophilin-a E		5e-11

>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With Cyclosporin A Length = 167

Iteration: 1
 Score =  232 bits (591), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 108/138 (78%), Positives = 120/138 (86%), Gaps = 1/138 (0%)
Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T  GDIKIE+FCE  PKTCENFLALCAS+YYNGCIFHRNIKGF+VQTGDPT TG+GGNSI
Sbjct: 13  TDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRGGNSI 72
Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
           WGKKFEDE+ E LKH+ RG+VSMANNGPNTN SQFFITY    HLD+KYT+FGKVIDG E
Sbjct: 73  WGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLE 132
Query: 177 TLDNLEKLPVN-PNHKPI 193
           TLD LEKLPVN   ++P+
Sbjct: 133 TLDELEKLPVNEKTYRPL 150

>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J Length = 161

Iteration: 1
 Score =  231 bits (589), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 108/138 (78%), Positives = 120/138 (86%), Gaps = 1/138 (0%)
Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T  GDIKIE+FCE  PKTCENFLALCAS+YYNGCIFHRNIKGF+VQTGDPT TG+GGNSI
Sbjct: 7   TDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRGGNSI 66
Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
           WGKKFEDE+ E LKH+ RG+VSMANNGPNTN SQFFITY    HLD+KYT+FGKVIDG E
Sbjct: 67  WGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLE 126
Query: 177 TLDNLEKLPVN-PNHKPI 193
           TLD LEKLPVN   ++P+
Sbjct: 127 TLDELEKLPVNEKTYRPL 144

>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660 Length = 185

Iteration: 1
 Score =  179 bits (453), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 86/141 (60%), Positives = 105/141 (74%), Gaps = 4/141 (2%)
Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T+ GD+K ELFC  CPK C+NFLAL AS YY   IFH+NIKGFI+Q GDPT TGKGG SI
Sbjct: 23  TNYGDLKFELFCSQCPKACKNFLALSASGYYKNTIFHKNIKGFIIQGGDPTGTGKGGESI 82
Query: 117 WGKKFEDEFKETLKHSERGIVSMANNG----PNTNASQFFITYAAHAHLDLKYTIFGKVI 172
           +G+ F+DE    LK+  RGI+SMA+ G    PNTN SQFFITY++   L+ +Y IFGK+I
Sbjct: 83  YGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGKLI 142
Query: 173 DGFETLDNLEKLPVNPNHKPI 193
           DGFETL+ LE  P + +HKPI
Sbjct: 143 DGFETLNTLENCPSDKSHKPI 163

>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein Length = 196

Iteration: 1
 Score =  149 bits (375), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 71/138 (51%), Positives = 93/138 (67%)
Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T+ GD ++EL+    PKTC NF  LC   +Y+  IFHR I  F++Q GDPT TGKGG SI
Sbjct: 45  TNLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQGGDPTGTGKGGKSI 104
Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
           +G+ FEDE  + LKH+  GI+SM+NNGPNTN+SQFFIT A   HLD K+TIF +V     
Sbjct: 105 YGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMT 164
Query: 177 TLDNLEKLPVNPNHKPIF 194
            ++N+  +     +KPIF
Sbjct: 165 CIENIASVQTTATNKPIF 182

>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain Of Human Ppwd1 Length = 176

Iteration: 1
 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 72/132 (54%), Positives = 86/132 (65%)
Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T  GDI  +LF  +CPKT ENF     + YYNG  FHR IKGF++QTGDPT TG GG SI
Sbjct: 28  TSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESI 87
Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
           WG +FEDEF  TL+H     +SMAN G NTN SQFFIT      LD K+T+FG+V  G E
Sbjct: 88  WGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGME 147
Query: 177 TLDNLEKLPVNP 188
            +  +  + VNP
Sbjct: 148 VVQRISNVKVNP 159

>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B Length = 197

Iteration: 1
 Score =  147 bits (371), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 74/132 (56%), Positives = 100/132 (75%)
Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T+ GD+ +EL C+  PKTCENF+ LC   YY+G IFHR+I+ F++Q GDPT TG GG S 
Sbjct: 26  TNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPTGTGTGGESY 85
Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
           WGK F+DEF+  L H+ RGI+SMAN+GPN+N SQFFIT+ + A+LD K+TIFG+V+ GF+
Sbjct: 86  WGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFD 145
Query: 177 TLDNLEKLPVNP 188
            L  +E +  +P
Sbjct: 146 VLTAMENVESDP 157

>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative Cyclosporin- Binding Domain Length = 160

Iteration: 1
 Score =  144 bits (362), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 73/137 (53%), Positives = 92/137 (67%)
Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T  GDI I LF ++C KT +NF     + YYN CIFHR IK F+VQTGDP+  G GG SI
Sbjct: 12  TTMGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPSGDGTGGESI 71
Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
           WG +FEDEF + L HS+  +VSMAN GPNTN SQFFIT      LD K+T+FGKV  G +
Sbjct: 72  WGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSK 131
Query: 177 TLDNLEKLPVNPNHKPI 193
            + ++EK+  +   KP+
Sbjct: 132 IVLDIEKVRTDKRDKPL 148

>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And Insights Into Its Interaction With Skip Length = 174

Iteration: 1
 Score =  139 bits (351), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 67/137 (48%), Positives = 89/137 (64%)
Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T  G I +EL+ +  PKTC+NF  L    YYNG  FHR IK F++Q GDPT TG+GG SI
Sbjct: 18  TSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRGGASI 77
Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
           +GK+FEDE    LK +  GI++MAN GP+TN SQFF+T A    LD K+TIFG+V  G  
Sbjct: 78  YGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIG 137
Query: 177 TLDNLEKLPVNPNHKPI 193
            ++ +  +  N   +P+
Sbjct: 138 MVNRVGMVETNSQDRPV 154

>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With Cyclosporine A Suggests A Binding Mode For Skip Length = 166

Iteration: 1
 Score =  139 bits (351), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 67/137 (48%), Positives = 89/137 (64%)
Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T  G I +EL+ +  PKTC+NF  L    YYNG  FHR IK F++Q GDPT TG+GG SI
Sbjct: 18  TSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRGGASI 77
Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
           +GK+FEDE    LK +  GI++MAN GP+TN SQFF+T A    LD K+TIFG+V  G  
Sbjct: 78  YGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIG 137
Query: 177 TLDNLEKLPVNPNHKPI 193
            ++ +  +  N   +P+
Sbjct: 138 MVNRVGMVETNSQDRPV 154

>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of Skip Length = 203

Iteration: 1
 Score =  139 bits (351), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 67/137 (48%), Positives = 89/137 (64%)
Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T  G I +EL+ +  PKTC+NF  L    YYNG  FHR IK F++Q GDPT TG+GG SI
Sbjct: 18  TSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRGGASI 77
Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
           +GK+FEDE    LK +  GI++MAN GP+TN SQFF+T A    LD K+TIFG+V  G  
Sbjct: 78  YGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIG 137
Query: 177 TLDNLEKLPVNPNHKPI 193
            ++ +  +  N   +P+
Sbjct: 138 MVNRVGMVETNSQDRPV 154

>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The Serologically Defined Colon Cancer Antigen 10 From Homo Sapiens Length = 185

Iteration: 1
 Score =  131 bits (330), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 65/137 (47%), Positives = 87/137 (63%), Gaps = 1/137 (0%)
Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T  GDI IEL+ ++ PK C NF+ LC   YY+  IFHR + GFIVQ GDPT TG GG SI
Sbjct: 31  TTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTGTGSGGESI 90
Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVI-DGF 175
           +G  F+DEF   L+ + RG+V+MAN G + N SQFF T      L+ K+TIFGKV  D  
Sbjct: 91  YGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVTGDTV 150
Query: 176 ETLDNLEKLPVNPNHKP 192
             +  L ++ ++ + +P
Sbjct: 151 YNMLRLSEVDIDDDERP 167

>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From Brugia Malayi Complexed With Cyclosporin A Length = 177

Iteration: 1
 Score =  117 bits (292), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 67/157 (42%), Positives = 89/157 (56%), Gaps = 13/157 (8%)
Query: 49  FIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASD-----------YYNGCIFHRNIK 97
           F+  T D    G I +EL+ +  P+TC NFL LC              +Y G  FHR IK
Sbjct: 10  FLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIK 69
Query: 98  GFIVQTGDPTHT-GKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYA 156
            F++Q GD T   G GG SI+G  F+DE +  +KH E  +VSMAN GPNTN SQFFIT  
Sbjct: 70  NFMIQGGDFTKGDGTGGESIYGGMFDDE-EFVMKHDEPFVVSMANKGPNTNGSQFFITTT 128
Query: 157 AHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPI 193
              HL+  + +FGKV+ G E +  +E L  N  ++P+
Sbjct: 129 PAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPL 165

>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor Length = 184

Iteration: 1
 Score =  116 bits (291), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 68/139 (48%), Positives = 84/139 (60%), Gaps = 7/139 (5%)
Query: 50  IVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDP 106
           I   G+P   G +  ELF +  PKT ENF AL   +    Y G  FHR I GF+ Q GD 
Sbjct: 29  IAVDGEPL--GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDF 86
Query: 107 T-HTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKY 165
           T H G GG SI+G+KFEDE    LKH+  GI+SMAN GPNTN SQFFI  A    LD K+
Sbjct: 87  TRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKH 145
Query: 166 TIFGKVIDGFETLDNLEKL 184
            +FGKV +G   ++ +E+ 
Sbjct: 146 VVFGKVKEGMNIVEAMERF 164

>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With Cyclophilin A Length = 173

Iteration: 1
 Score =  116 bits (291), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 68/139 (48%), Positives = 84/139 (60%), Gaps = 7/139 (5%)
Query: 50  IVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDP 106
           I   G+P   G +  ELF +  PKT ENF AL   +    Y G  FHR I GF+ Q GD 
Sbjct: 18  IAVDGEPL--GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDF 75
Query: 107 T-HTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKY 165
           T H G GG SI+G+KFEDE    LKH+  GI+SMAN GPNTN SQFFI  A    LD K+
Sbjct: 76  TRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKH 134
Query: 166 TIFGKVIDGFETLDNLEKL 184
            +FGKV +G   ++ +E+ 
Sbjct: 135 VVFGKVKEGMNIVEAMERF 153

>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With Immunosuppressive Drug Cyclosporin A Length = 182

Iteration: 1
 Score =  116 bits (291), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/164 (45%), Positives = 94/164 (57%), Gaps = 8/164 (4%)
Query: 49  FIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGD 105
           F V+ GD    G I I LF    PKT ENF+AL   +    Y G IFHR IK F++Q GD
Sbjct: 12  FDVRIGD-KDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFMIQGGD 70
Query: 106 PT-HTGKGGNSIWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDL 163
            T   G GG SI+G+ F DE FK  LKH   G VSMAN GP+TN SQFFIT      LD 
Sbjct: 71  FTARDGTGGMSIYGETFPDENFK--LKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDG 128
Query: 164 KYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLK 207
           K+ +FGKV+DG   + ++E    + + +P+   T      +D+K
Sbjct: 129 KHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVNSGKIDVK 172

>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N- Terminal Domain (1-146) M-Type H87a Complex. Length = 164

Iteration: 1
 Score =  116 bits (291), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 68/139 (48%), Positives = 84/139 (60%), Gaps = 7/139 (5%)
Query: 50  IVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDP 106
           I   G+P   G +  ELF +  PKT ENF AL   +    Y G  FHR I GF+ Q GD 
Sbjct: 10  IAVDGEPL--GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDF 67
Query: 107 T-HTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKY 165
           T H G GG SI+G+KFEDE    LKH+  GI+SMAN GPNTN SQFFI  A    LD K+
Sbjct: 68  TRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKH 126
Query: 166 TIFGKVIDGFETLDNLEKL 184
            +FGKV +G   ++ +E+ 
Sbjct: 127 VVFGKVKEGMNIVEAMERF 145

>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With Cyclosporin A And N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine Cyclosporin A Length = 165

Iteration: 1
 Score =  116 bits (290), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 68/139 (48%), Positives = 84/139 (60%), Gaps = 7/139 (5%)
Query: 50  IVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDP 106
           I   G+P   G +  ELF +  PKT ENF AL   +    Y G  FHR I GF+ Q GD 
Sbjct: 10  IAVDGEPL--GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDF 67
Query: 107 T-HTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKY 165
           T H G GG SI+G+KFEDE    LKH+  GI+SMAN GPNTN SQFFI  A    LD K+
Sbjct: 68  TRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKH 126
Query: 166 TIFGKVIDGFETLDNLEKL 184
            +FGKV +G   ++ +E+ 
Sbjct: 127 VVFGKVKEGMNIVEAMERF 145

>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin Length = 165

Iteration: 1
 Score =  116 bits (290), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 68/139 (48%), Positives = 84/139 (60%), Gaps = 7/139 (5%)
Query: 50  IVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDP 106
           I   G+P   G +  ELF +  PKT ENF AL   +    Y G  FHR I GF+ Q GD 
Sbjct: 10  IAVDGEPL--GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDF 67
Query: 107 T-HTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKY 165
           T H G GG SI+G+KFEDE    LKH+  GI+SMAN GPNTN SQFFI  A    LD K+
Sbjct: 68  TRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKH 126
Query: 166 TIFGKVIDGFETLDNLEKL 184
            +FGKV +G   ++ +E+ 
Sbjct: 127 VVFGKVKEGMNIVEAMERF 145

>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro Length = 164

Iteration: 1
 Score =  116 bits (290), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 68/139 (48%), Positives = 84/139 (60%), Gaps = 7/139 (5%)
Query: 50  IVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDP 106
           I   G+P   G +  ELF +  PKT ENF AL   +    Y G  FHR I GF+ Q GD 
Sbjct: 9   IAVDGEPL--GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDF 66
Query: 107 T-HTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKY 165
           T H G GG SI+G+KFEDE    LKH+  GI+SMAN GPNTN SQFFI  A    LD K+
Sbjct: 67  TRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKH 125
Query: 166 TIFGKVIDGFETLDNLEKL 184
            +FGKV +G   ++ +E+ 
Sbjct: 126 VVFGKVKEGMNIVEAMERF 144

>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania Donovani Length = 172

Iteration: 1
 Score =  116 bits (290), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 68/154 (44%), Positives = 90/154 (58%), Gaps = 6/154 (3%)
Query: 55  DPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPTH-TG 110
           D    G I I LF +D P T ENF  LC  ++   Y   IFHR I+ F++Q GD T+  G
Sbjct: 21  DSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDG 80
Query: 111 KGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGK 170
            GG SI+G+KF DE    +KH   G +SMAN GPNTN SQFFIT A    LD ++ +FGK
Sbjct: 81  TGGKSIYGEKFADE-NLNVKHF-VGALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGK 138
Query: 171 VIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHL 204
           V+DG + +  +EK   N + +P+  +   A   L
Sbjct: 139 VLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172

>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20 Length = 177

Iteration: 1
 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/174 (41%), Positives = 96/174 (55%), Gaps = 19/174 (10%)
Query: 29  LALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY-- 86
           +A+  S   N  +F      F V  G     G +KIELF +  PKT ENF   C  ++  
Sbjct: 1   MAVANSSPVNPVVF------FDVSIGG-QEVGRMKIELFADVVPKTAENFRQFCTGEFRK 53
Query: 87  ------YNGCIFHRNIKGFIVQTGDPTHT-GKGGNSIWGKKFEDE-FKETLKHSERGIVS 138
                 Y G  FHR IK F++Q GD  +  G G  SI+   F DE FK  L+HS  G++S
Sbjct: 54  DGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFK--LRHSAPGLLS 111
Query: 139 MANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKP 192
           MAN+GP+TN  QFFIT +    LD K+ +FGK+IDG   +  +E +P  PN+KP
Sbjct: 112 MANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKP 165

>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With Cyclosporin A Length = 170

Iteration: 1
 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 64/139 (46%), Positives = 84/139 (60%), Gaps = 11/139 (7%)
Query: 55  DPTHTGDIKIELFCEDCPKTCENFLALCASD---------YYNGCIFHRNIKGFIVQTGD 105
           D ++ G I  ELF +  P+TCENF ALC  +         +Y   IFHR I  F+ Q GD
Sbjct: 13  DNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGD 72
Query: 106 PTH-TGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLK 164
            T+  G GG SI+G+ F DE    +KH + G++SMAN GPNTN+SQFFIT      LD K
Sbjct: 73  ITNGNGSGGESIYGRSFTDE-NFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGK 131
Query: 165 YTIFGKVIDGFETLDNLEK 183
           + +FGKVI+G   +  +EK
Sbjct: 132 HVVFGKVIEGMNVVREMEK 150

>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr Length = 165

Iteration: 1
 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 67/139 (48%), Positives = 84/139 (60%), Gaps = 7/139 (5%)
Query: 50  IVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDP 106
           I   G+P   G +  ELF +  PKT ENF AL   +    Y G  FHR I GF+ Q GD 
Sbjct: 10  IAVDGEPL--GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDF 67
Query: 107 T-HTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKY 165
           T H G GG SI+G+KFEDE    LKH+  GI++MAN GPNTN SQFFI  A    LD K+
Sbjct: 68  TRHNGTGGKSIYGEKFEDE-NFILKHTGPGILTMANAGPNTNGSQFFICTAKTEWLDGKH 126
Query: 166 TIFGKVIDGFETLDNLEKL 184
            +FGKV +G   ++ +E+ 
Sbjct: 127 VVFGKVKEGMNIVEAMERF 145

>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys Length = 165

Iteration: 1
 Score =  115 bits (287), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 67/139 (48%), Positives = 84/139 (60%), Gaps = 7/139 (5%)
Query: 50  IVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDP 106
           I   G+P   G +  ELF +  PKT ENF AL   +    Y G  FH+ I GF+ Q GD 
Sbjct: 10  IAVDGEPL--GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHKIIPGFMCQGGDF 67
Query: 107 T-HTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKY 165
           T H G GG SI+G+KFEDE    LKH+  GI+SMAN GPNTN SQFFI  A    LD K+
Sbjct: 68  TRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKH 126
Query: 166 TIFGKVIDGFETLDNLEKL 184
            +FGKV +G   ++ +E+ 
Sbjct: 127 VVFGKVKEGMNIVEAMERF 145

>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From Leishmania Donovani Length = 172

Iteration: 1
 Score =  114 bits (286), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 68/154 (44%), Positives = 89/154 (57%), Gaps = 6/154 (3%)
Query: 55  DPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPTH-TG 110
           D    G I I LF +D P T ENF  LC  ++   Y   IFHR I+ F++Q GD T+  G
Sbjct: 21  DSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDG 80
Query: 111 KGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGK 170
            GG SI+G+KF DE    +KH   G +SMAN GPNTN SQFFIT A    LD  + +FGK
Sbjct: 81  TGGKSIYGEKFADE-NLNVKHF-VGALSMANAGPNTNGSQFFITTAPTPWLDGAHVVFGK 138
Query: 171 VIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHL 204
           V+DG + +  +EK   N + +P+  +   A   L
Sbjct: 139 VLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172

>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The Antiretroviral Trimcyp Length = 163

Iteration: 1
 Score =  114 bits (286), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 67/139 (48%), Positives = 84/139 (60%), Gaps = 7/139 (5%)
Query: 50  IVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDP 106
           I   G+P   G +  ELF +  PKT ENF AL   +    Y G  FHR I GF+ Q GD 
Sbjct: 9   IAVDGEPL--GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDF 66
Query: 107 TH-TGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKY 165
           TH  G GG SI+G+KFEDE    LKH+  GI+SMAN GPNTN SQFFI  A    LD K+
Sbjct: 67  THHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKH 125
Query: 166 TIFGKVIDGFETLDNLEKL 184
            +FGKV +G   ++ +++ 
Sbjct: 126 VVFGKVKEGMNIVEAMKRF 144

>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2 Length = 165

Iteration: 1
 Score =  114 bits (286), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 67/139 (48%), Positives = 84/139 (60%), Gaps = 7/139 (5%)
Query: 50  IVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDP 106
           I   G+P   G +  ELF +  PKT ENF AL   +    Y G  FHR I GF+ Q G+ 
Sbjct: 10  IAVDGEPL--GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGNF 67
Query: 107 TH-TGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKY 165
           TH  G GG SI+G+KFEDE    LKH+  GI+SMAN GPNTN SQFFI  A    LD K+
Sbjct: 68  THHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKH 126
Query: 166 TIFGKVIDGFETLDNLEKL 184
            +FGKV +G   ++ +E+ 
Sbjct: 127 VVFGKVKEGMNIVEAMERF 145

>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The Human Nk-Tumour Recognition Protein Length = 192

Iteration: 1
 Score =  114 bits (286), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 63/146 (43%), Positives = 84/146 (57%), Gaps = 13/146 (8%)
Query: 59  TGDIKIELFCEDCPKTCENFLALCASDY-----------YNGCIFHRNIKGFIVQTGDPT 107
            G I  +LF + CPKTC+NFL LC+ +            Y G  FHR +K F++Q GD +
Sbjct: 33  VGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFS 92
Query: 108 H-TGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYT 166
              GKGG SI+G  F+DE    LKH    ++SMAN G +TN SQFFIT     HLD  + 
Sbjct: 93  EGNGKGGESIYGGYFKDE-NFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHV 151
Query: 167 IFGKVIDGFETLDNLEKLPVNPNHKP 192
           +FG VI GFE ++ +E L  +   +P
Sbjct: 152 VFGLVISGFEVIEQIENLKTDAASRP 177

>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a Length = 164

Iteration: 1
 Score =  114 bits (286), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 67/139 (48%), Positives = 83/139 (59%), Gaps = 7/139 (5%)
Query: 50  IVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDP 106
           I   G+P   G +  ELF +  PKT ENF AL   +    Y G  FHR I GF+ Q GD 
Sbjct: 9   IAVDGEPL--GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDF 66
Query: 107 T-HTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKY 165
           T H G GG SI+G+KFEDE    LKH+  GI+SMAN GPNTN SQFFI  A    LD K+
Sbjct: 67  TRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDGKH 125
Query: 166 TIFGKVIDGFETLDNLEKL 184
            +FG V +G   ++ +E+ 
Sbjct: 126 VVFGAVKEGMNIVEAMERF 144

>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex Length = 165

Iteration: 1
 Score =  114 bits (286), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 67/139 (48%), Positives = 83/139 (59%), Gaps = 7/139 (5%)
Query: 50  IVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDP 106
           I   G+P   G +  ELF +  PKT ENF AL   +    Y G  FHR I GF+ Q GD 
Sbjct: 10  IAVDGEPL--GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDF 67
Query: 107 T-HTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKY 165
           T H G GG SI+G+KFEDE    LKH+  GI+SMAN GPNTN SQFFI  A    LD  +
Sbjct: 68  TRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGXH 126
Query: 166 TIFGKVIDGFETLDNLEKL 184
            +FGKV +G   ++ +E+ 
Sbjct: 127 VVFGKVKEGMNIVEAMERF 145

>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form Length = 165

Iteration: 1
 Score =  114 bits (285), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 67/139 (48%), Positives = 83/139 (59%), Gaps = 7/139 (5%)
Query: 50  IVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDP 106
           I   G+P   G +  ELF +  PKT ENF AL   +    Y G  FHR I GF+ Q GD 
Sbjct: 10  IAVDGEPL--GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDF 67
Query: 107 T-HTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKY 165
           T H G GG SI+G+KFEDE    LKH+  GI+SMAN GPNTN SQFFI  A    LD  +
Sbjct: 68  TRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDGXH 126
Query: 166 TIFGKVIDGFETLDNLEKL 184
            +FGKV +G   ++ +E+ 
Sbjct: 127 VVFGKVKEGMNIVEAMERF 145

>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c Mutant Length = 165

Iteration: 1
 Score =  114 bits (285), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 67/139 (48%), Positives = 84/139 (60%), Gaps = 7/139 (5%)
Query: 50  IVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDP 106
           I   G+P   G +  ELF +  PKT ENF AL   +    Y G  FHR I GF+ Q G+ 
Sbjct: 10  IAVDGEPL--GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGNF 67
Query: 107 TH-TGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKY 165
           TH  G GG SI+G+KFEDE    LKH+  GI+SMAN GPNTN SQFFI  A    LD K+
Sbjct: 68  THCNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKH 126
Query: 166 TIFGKVIDGFETLDNLEKL 184
            +FGKV +G   ++ +E+ 
Sbjct: 127 VVFGKVKEGMNIVEAMERF 145

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score =  114 bits (285), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 67/147 (45%), Positives = 83/147 (56%), Gaps = 14/147 (9%)
Query: 58  HTGDIKIELFCEDCPKTCENFLALCASD-----------YYNGCIFHRNIKGFIVQTGD- 105
             G I +ELF +  PKT ENF ALC  +           ++ GC FHR IK F++Q GD 
Sbjct: 28  RVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDF 87
Query: 106 PTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKY 165
               G GG SI+G+KFEDE     KH + G++SMAN G NTN SQFFIT     HLD K+
Sbjct: 88  SNQNGTGGESIYGEKFEDE-NFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKH 146
Query: 166 TIFGKVIDGFETLDNLEKLPVNPNHKP 192
            +FG+VI G      LE + V    KP
Sbjct: 147 VVFGQVIKGMGVAKILENVEVK-GEKP 172

>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form Length = 169

Iteration: 1
 Score =  114 bits (284), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 67/139 (48%), Positives = 83/139 (59%), Gaps = 7/139 (5%)
Query: 50  IVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDP 106
           I   G+P   G +  ELF +  PKT ENF AL   +    Y G  FHR I GF+ Q GD 
Sbjct: 14  IAVDGEPL--GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDF 71
Query: 107 T-HTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKY 165
           T H G GG SI+G+KFEDE    LKH+  GI+SMAN GPNTN SQFFI  A    LD  +
Sbjct: 72  TRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDGXH 130
Query: 166 TIFGKVIDGFETLDNLEKL 184
            +FGKV +G   ++ +E+ 
Sbjct: 131 VVFGKVKEGMNIVEAMERF 149

>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A Length = 190

Iteration: 1
 Score =  114 bits (284), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 73/164 (44%), Positives = 94/164 (57%), Gaps = 8/164 (4%)
Query: 49  FIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGD 105
           F V+ GD    G I I LF +  PKT ENF+AL   +    Y G  FHR IK F++Q GD
Sbjct: 20  FDVRIGDK-DVGRIVIGLFGKVVPKTVENFVALATGEKGYGYKGSKFHRVIKDFMIQGGD 78
Query: 106 -PTHTGKGGNSIWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDL 163
             T  G GG SI+G+ F DE FK  LKH   G VSMAN GP+TN SQFFIT      LD 
Sbjct: 79  ITTGDGTGGVSIYGETFPDENFK--LKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDG 136
Query: 164 KYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLK 207
           K+ +FGKVIDG   + ++E    + + +P+   +      +D+K
Sbjct: 137 KHVVFGKVIDGMTVVHSIELQATDGHDRPLTNCSIINSGKIDVK 180

>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G In Complex With Cyclosporin A Length = 179

Iteration: 1
 Score =  113 bits (283), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 62/146 (42%), Positives = 84/146 (57%), Gaps = 13/146 (8%)
Query: 59  TGDIKIELFCEDCPKTCENFLALCASD-----------YYNGCIFHRNIKGFIVQTGDPT 107
            G +  ELF + CPKTCENF  LC  +           +Y  C+FHR +K F+VQ GD +
Sbjct: 23  AGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFS 82
Query: 108 H-TGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYT 166
              G+GG SI+G  FEDE    +KH++  ++SMAN G +TN SQFFIT     HLD  + 
Sbjct: 83  EGNGRGGESIYGGFFEDE-SFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHV 141
Query: 167 IFGKVIDGFETLDNLEKLPVNPNHKP 192
           +FG+VI G E +  +E    +   KP
Sbjct: 142 VFGQVISGQEVVREIENQKTDAASKP 167

>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant) Complexed With Cyclosporin A Length = 170

Iteration: 1
 Score =  113 bits (282), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 63/139 (45%), Positives = 83/139 (59%), Gaps = 11/139 (7%)
Query: 55  DPTHTGDIKIELFCEDCPKTCENFLALCASD---------YYNGCIFHRNIKGFIVQTGD 105
           D ++ G I  ELF +  P+TCENF ALC  +         +Y   IFHR I  F+ Q GD
Sbjct: 13  DNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGD 72
Query: 106 PTH-TGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLK 164
            T+  G GG SI+G+ F DE    +KH + G++SMAN GPNTN+SQF IT      LD K
Sbjct: 73  ITNGNGSGGESIYGRSFTDE-NFNMKHDQPGLLSMANAGPNTNSSQFLITLVPCPWLDGK 131
Query: 165 YTIFGKVIDGFETLDNLEK 183
           + +FGKVI+G   +  +EK
Sbjct: 132 HVVFGKVIEGMNVVREMEK 150

>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain Of Human Cyclophilin G Length = 198

Iteration: 1
 Score =  112 bits (280), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/146 (42%), Positives = 83/146 (56%), Gaps = 13/146 (8%)
Query: 59  TGDIKIELFCEDCPKTCENFLALCASD-----------YYNGCIFHRNIKGFIVQTGDPT 107
            G +  ELF + CPKTCENF  LC  +           +Y  C+FHR +K F+VQ GD +
Sbjct: 40  AGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFS 99
Query: 108 H-TGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYT 166
              G+GG SI+G  FEDE    +KH+   ++SMAN G +TN SQFFIT     HLD  + 
Sbjct: 100 EGNGRGGESIYGGFFEDE-SFAVKHNAAFLLSMANRGKDTNGSQFFITTKPTPHLDGHHV 158
Query: 167 IFGKVIDGFETLDNLEKLPVNPNHKP 192
           +FG+VI G E +  +E    +   KP
Sbjct: 159 VFGQVISGQEVVREIENQKTDAASKP 184

>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major Length = 183

Iteration: 1
 Score =  112 bits (280), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/143 (43%), Positives = 82/143 (57%), Gaps = 13/143 (9%)
Query: 55  DPTHTGDIKIELFCEDCPKTCENFLALCASD----------YYNGCIFHRNIKGFIVQTG 104
           D    G I +EL+ +  PKT ENF ALC  +          +Y   +FHR I  F++Q G
Sbjct: 17  DNKAAGRIVMELYADTVPKTAENFRALCTGEKGKGRSGKPLHYKSSVFHRVIPNFMIQGG 76
Query: 105 DPTH-TGKGGNSIWGKKFEDEF--KETLKHSERGIVSMANNGPNTNASQFFITYAAHAHL 161
           D T   G GG SI+G  F DE    +  +H+  G +SMAN GPNTN SQFFI  AA   L
Sbjct: 77  DFTRGNGTGGESIYGTTFRDESFSGKAGRHTGLGCLSMANAGPNTNGSQFFICTAATPWL 136
Query: 162 DLKYTIFGKVIDGFETLDNLEKL 184
           D K+ +FG+VIDG + +  +E+L
Sbjct: 137 DGKHVVFGRVIDGLDVVKKVERL 159

>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes Hyperelastosis Cutis In The American Quarter Horse Length = 185

Iteration: 1
 Score =  111 bits (278), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 69/156 (44%), Positives = 91/156 (58%), Gaps = 8/156 (5%)
Query: 49  FIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGD 105
           F ++ GD    G + I LF +  PKT +NF+AL   +    Y    FHR IK F++Q GD
Sbjct: 17  FDLRIGDE-DIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGD 75
Query: 106 PTH-TGKGGNSIWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDL 163
            T   G GG SI+G++F DE FK  LKH   G VSMAN G +TN SQFFIT    A LD 
Sbjct: 76  FTRGDGTGGKSIYGERFPDENFK--LKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDG 133
Query: 164 KYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYA 199
           K+ +FGKV++G E +  +E    +   KP+  +T A
Sbjct: 134 KHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIA 169

>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B Length = 185

Iteration: 1
 Score =  111 bits (278), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 69/156 (44%), Positives = 91/156 (58%), Gaps = 8/156 (5%)
Query: 49  FIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGD 105
           F ++ GD    G + I LF +  PKT +NF+AL   +    Y    FHR IK F++Q GD
Sbjct: 17  FDLRIGDE-DIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGD 75
Query: 106 PTHT-GKGGNSIWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDL 163
            T   G GG SI+G++F DE FK  LKH   G VSMAN G +TN SQFFIT    A LD 
Sbjct: 76  FTRGDGTGGKSIYGERFPDENFK--LKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDG 133
Query: 164 KYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYA 199
           K+ +FGKV++G E +  +E    +   KP+  +T A
Sbjct: 134 KHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIA 169

>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi Length = 166

Iteration: 1
 Score =  110 bits (276), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 62/138 (44%), Positives = 83/138 (60%), Gaps = 6/138 (4%)
Query: 59  TGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPTH-TGKGGN 114
            G + I LF  D PKT ENF  L + +    Y G IFHR I+ F++Q GD T+  G GG 
Sbjct: 19  VGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNFMIQGGDFTNFDGTGGK 78
Query: 115 SIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDG 174
           SI+G +F+DE    +KH   G VSMAN GPN+N SQFF+T A    LD ++ +FGKV++G
Sbjct: 79  SIYGTRFDDE-NLKIKHFV-GAVSMANAGPNSNGSQFFVTTAPTPWLDGRHVVFGKVVEG 136
Query: 175 FETLDNLEKLPVNPNHKP 192
            + +  +E      N KP
Sbjct: 137 MDVVKKVENTKTGLNDKP 154

>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis Mala S 6 Allergen, A Member Of The Cyclophilin Pan- Allergen Family Length = 162

Iteration: 1
 Score =  110 bits (276), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 66/137 (48%), Positives = 83/137 (60%), Gaps = 7/137 (5%)
Query: 50  IVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDP 106
           I + G P   G IK +LF +  PKT  NF ALC  +    Y G  FHR I  F++Q GD 
Sbjct: 8   ITKNGAPL--GTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFMLQGGDF 65
Query: 107 TH-TGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKY 165
           T   G GG SI+G KF DE    LKH++ G++SMAN GPNTN SQFFIT    + LD K+
Sbjct: 66  TAGNGTGGKSIYGAKFADE-NFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSWLDGKH 124
Query: 166 TIFGKVIDGFETLDNLE 182
            +FG+VIDG   +  +E
Sbjct: 125 VVFGEVIDGMNVVKAIE 141

>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer) Length = 164

Iteration: 1
 Score =  110 bits (274), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 67/139 (48%), Positives = 81/139 (58%), Gaps = 7/139 (5%)
Query: 50  IVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDP 106
           I   G+P   G +  ELF +  PKT ENF AL   +    Y G  FHR I GF  Q GD 
Sbjct: 9   IAVDGEPL--GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFXCQGGDF 66
Query: 107 T-HTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKY 165
           T H G GG SI+G+KFEDE    LKH+  GI+S AN GPNTN SQFFI  A    LD K+
Sbjct: 67  TRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSXANAGPNTNGSQFFICTAKTEWLDGKH 125
Query: 166 TIFGKVIDGFETLDNLEKL 184
            +FGKV +G   ++  E+ 
Sbjct: 126 VVFGKVKEGXNIVEAXERF 144

>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358 Length = 167

Iteration: 1
 Score =  109 bits (273), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 64/135 (47%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 54  GDPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPT-HT 109
           G+P   G I +ELF    P+T ENF ALC  +    +   IFHR I  F+ Q GD T H 
Sbjct: 17  GEPL--GRITMELFSNIVPRTAENFRALCTGEKGFGFKNSIFHRVIPDFVCQGGDITKHD 74
Query: 110 GKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFG 169
           G GG SI+G KFEDE    +KH+  G++SMAN G NTN SQF IT     HLD K+ +FG
Sbjct: 75  GTGGQSIYGDKFEDE-NFDVKHTGPGLLSMANQGQNTNNSQFVITLKKAEHLDFKHVVFG 133
Query: 170 KVIDGFETLDNLEKL 184
            V DG +T+  +E  
Sbjct: 134 FVKDGMDTVKKIESF 148

>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G Length = 179

Iteration: 1
 Score =  109 bits (273), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 61/146 (41%), Positives = 83/146 (56%), Gaps = 13/146 (8%)
Query: 59  TGDIKIELFCEDCPKTCENFLALCASD-----------YYNGCIFHRNIKGFIVQTGDPT 107
            G +  ELF + CPKTCENF  LC  +           +Y   +FHR +K F+VQ GD +
Sbjct: 23  AGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXLFHRVVKDFMVQGGDFS 82
Query: 108 H-TGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYT 166
              G+GG SI+G  FEDE    +KH++  ++SMAN G +TN SQFFIT     HLD  + 
Sbjct: 83  EGNGRGGESIYGGFFEDE-SFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHV 141
Query: 167 IFGKVIDGFETLDNLEKLPVNPNHKP 192
           +FG+VI G E +  +E    +   KP
Sbjct: 142 VFGQVISGQEVVREIENQKTDAASKP 167

>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin Reveals 3d Domain Swapping Of A Central Element Length = 172

Iteration: 1
 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/147 (44%), Positives = 84/147 (57%), Gaps = 12/147 (8%)
Query: 57  THTGDIKIELFCEDCPKTCENFLALC---ASDYYNGCIFHRNIKGFIVQTGDPTH-TGKG 112
           T  G I   LF +D PKT +NF  LC   A + Y    FHR I  F++Q GD T   G G
Sbjct: 19  TKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTG 78
Query: 113 GNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVI 172
           G SI+G KF DE   + KH ++GI+SMAN GPNTN SQFFIT A  + LD K+ +FG+V 
Sbjct: 79  GRSIYGDKFADE-NFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVA 137
Query: 173 D--GFETLDNLEKL-----PVNPNHKP 192
           D   +  +  +E L      V  N +P
Sbjct: 138 DEKSYSVVKEIEALGSSSGSVRSNTRP 164

>pdb|1CYN|A Chain A, Cyclophilin B Complexed With [d-(Cholinylester)ser8]-Cyclosporin Length = 178

Iteration: 1
 Score =  108 bits (271), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/150 (44%), Positives = 87/150 (58%), Gaps = 8/150 (5%)
Query: 49  FIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGD 105
           F ++ GD    G +   LF +  PKT +NF+AL   +    Y    FHR IK F++Q GD
Sbjct: 10  FDLRIGDE-DVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGD 68
Query: 106 PTHT-GKGGNSIWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDL 163
            T   G GG SI+G++F DE FK  LKH   G VSMAN G +TN SQFFIT    A LD 
Sbjct: 69  FTRGDGTGGKSIYGERFPDENFK--LKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDG 126
Query: 164 KYTIFGKVIDGFETLDNLEKLPVNPNHKPI 193
           K+ +FGKV++G E +  +E    +   KP+
Sbjct: 127 KHVVFGKVLEGMEVVRKVESTKTDSRDKPL 156

>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution Length = 188

Iteration: 1
 Score =  108 bits (270), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/150 (44%), Positives = 87/150 (58%), Gaps = 8/150 (5%)
Query: 49  FIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGD 105
           F ++ GD    G +   LF +  PKT +NF+AL   +    Y    FHR IK F++Q GD
Sbjct: 20  FDLRIGD-EDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGD 78
Query: 106 PTHT-GKGGNSIWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDL 163
            T   G GG SI+G++F DE FK  LKH   G VSMAN G +TN SQFFIT    A LD 
Sbjct: 79  FTRGDGTGGKSIYGERFPDENFK--LKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDG 136
Query: 164 KYTIFGKVIDGFETLDNLEKLPVNPNHKPI 193
           K+ +FGKV++G E +  +E    +   KP+
Sbjct: 137 KHVVFGKVLEGMEVVRKVESTKTDSRDKPL 166

>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With Cyclosporin A Length = 165

Iteration: 1
 Score =  108 bits (269), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 61/129 (47%), Positives = 76/129 (58%), Gaps = 5/129 (3%)
Query: 60  GDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPT-HTGKGGNS 115
           G + +EL  +  PKT ENF ALC  +    Y G  FHR I  F+ Q GD T H G GG S
Sbjct: 18  GRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKS 77
Query: 116 IWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGF 175
           I+G +F DE   TLKH   G++SMAN GPNTN SQFFI       LD K+ +FG VI+G 
Sbjct: 78  IYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGM 136
Query: 176 ETLDNLEKL 184
           + +  +E  
Sbjct: 137 DVVKKIESF 145

>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine Length = 166

Iteration: 1
 Score =  108 bits (269), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 61/129 (47%), Positives = 76/129 (58%), Gaps = 5/129 (3%)
Query: 60  GDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPT-HTGKGGNS 115
           G + +EL  +  PKT ENF ALC  +    Y G  FHR I  F+ Q GD T H G GG S
Sbjct: 19  GRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKS 78
Query: 116 IWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGF 175
           I+G +F DE   TLKH   G++SMAN GPNTN SQFFI       LD K+ +FG VI+G 
Sbjct: 79  IYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGM 137
Query: 176 ETLDNLEKL 184
           + +  +E  
Sbjct: 138 DVVKKIESF 146

>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A Resolution Length = 165

Iteration: 1
 Score =  108 bits (269), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 61/129 (47%), Positives = 76/129 (58%), Gaps = 5/129 (3%)
Query: 60  GDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPT-HTGKGGNS 115
           G + +EL  +  PKT ENF ALC  +    Y G  FHR I  F+ Q GD T H G GG S
Sbjct: 18  GRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKS 77
Query: 116 IWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGF 175
           I+G +F DE   TLKH   G++SMAN GPNTN SQFFI       LD K+ +FG VI+G 
Sbjct: 78  IYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGM 136
Query: 176 ETLDNLEKL 184
           + +  +E  
Sbjct: 137 DVVKKIESF 145

>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A Resolution At Room Temperature Length = 164

Iteration: 1
 Score =  108 bits (269), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 61/129 (47%), Positives = 76/129 (58%), Gaps = 5/129 (3%)
Query: 60  GDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPT-HTGKGGNS 115
           G + +EL  +  PKT ENF ALC  +    Y G  FHR I  F+ Q GD T H G GG S
Sbjct: 17  GRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKS 76
Query: 116 IWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGF 175
           I+G +F DE   TLKH   G++SMAN GPNTN SQFFI       LD K+ +FG VI+G 
Sbjct: 77  IYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGM 135
Query: 176 ETLDNLEKL 184
           + +  +E  
Sbjct: 136 DVVKKIESF 144

>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans Length = 182

Iteration: 1
 Score =  107 bits (267), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 63/150 (42%), Positives = 85/150 (56%), Gaps = 7/150 (4%)
Query: 60  GDIKIELFCEDCPKTCENFLALCA---SDYYNGCIFHRNIKGFIVQTGDPTHT-GKGGNS 115
           G I I LF +  PKT  NF+ L      + Y G  FHR I  F++Q GD T   G GG S
Sbjct: 21  GRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADFMIQGGDFTRGDGTGGRS 80
Query: 116 IWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDG 174
           I+G+KF DE FK  LKH   G +SMAN G +TN SQFFIT      LD ++ +FGK+++G
Sbjct: 81  IYGEKFADENFK--LKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEG 138
Query: 175 FETLDNLEKLPVNPNHKPIFFITYAAHAHL 204
            + +  +E+    P  +P   +  AA  H+
Sbjct: 139 MDVVRKIEQTEKLPGDRPKQDVIIAASGHI 168

>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase From Encephalitozoon Cuniculi At 1.9 A Resolution Length = 193

Iteration: 1
 Score =  107 bits (266), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 61/128 (47%), Positives = 81/128 (63%), Gaps = 5/128 (3%)
Query: 60  GDIKIELFCEDCPKTCENFLALC---ASDYYNGCIFHRNIKGFIVQTGDPT-HTGKGGNS 115
           G I ++L  +  PKT +NF  LC     + Y G  FHR I GF+VQ GD T H G GG S
Sbjct: 42  GRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMVQGGDYTAHNGTGGRS 101
Query: 116 IWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGF 175
           I+G+KF DE  E LKH++ GI+SMAN G +TN SQFFIT      LD K+ +FG+V++G 
Sbjct: 102 IYGEKFPDENFE-LKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGM 160
Query: 176 ETLDNLEK 183
           + +  + K
Sbjct: 161 DVVHKIAK 168

>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120 Length = 186

Iteration: 1
 Score =  106 bits (265), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 62/138 (44%), Positives = 77/138 (55%), Gaps = 12/138 (8%)
Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDY----------YNGCIFHRNIKGFIVQTGDP 106
           T  G I +ELF +  P T ENF ALC  +           Y G  FHR I  F++Q GD 
Sbjct: 31  TPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGDF 90
Query: 107 THT-GKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKY 165
           T   G GG SI+G KF DE      H    ++SMAN GPNTN SQFFIT      LD K+
Sbjct: 91  TRGDGTGGESIYGSKFRDE-NFVYTHDAPFLLSMANAGPNTNGSQFFITTVPCPWLDGKH 149
Query: 166 TIFGKVIDGFETLDNLEK 183
            +FGKV++G E + ++EK
Sbjct: 150 VVFGKVLEGMEVVKSIEK 167

>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1 Length = 162

Iteration: 1
 Score =  106 bits (264), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/136 (47%), Positives = 83/136 (61%), Gaps = 9/136 (6%)
Query: 55  DPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPTH-TG 110
           D    G +  +L+ +  PKT ENF ALC  +    Y G  FHR I  F++Q GD T   G
Sbjct: 11  DGQPIGRVVFKLYNDIVPKTAENFRALCTGEKGFGYAGSPFHRVIPDFMLQGGDFTAGNG 70
Query: 111 KGGNSIWGKKFEDE-FKETLKHSER-GIVSMANNGPNTNASQFFITYAAHAHLDLKYTIF 168
            GG SI+G KF DE FK   KH +R G++SMAN GPNTN SQFFIT      LD K+ +F
Sbjct: 71  TGGKSIYGGKFPDENFK---KHHDRPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVF 127
Query: 169 GKVIDGFETLDNLEKL 184
           G+V+DG++ +  +E L
Sbjct: 128 GEVVDGYDIVKKVESL 143

>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii Length = 229

Iteration: 1
 Score =  104 bits (259), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 62/140 (44%), Positives = 78/140 (55%), Gaps = 12/140 (8%)
Query: 60  GDIKIELFCEDCPKTCENFLALCASDY--------YNGCIFHRNIKGFIVQTGD-PTHTG 110
           G  K ELF    PKT ENF   C  +Y        Y   IFHR IK F++Q GD   H G
Sbjct: 74  GKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHNG 133
Query: 111 KGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGK 170
            G  SI+G+KF+DE    +KH + G++SMAN+GPNTN  QFFIT      LD K  +FG+
Sbjct: 134 SGSLSIYGEKFDDE-NFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGR 192
Query: 171 VI--DGFETLDNLEKLPVNP 188
           +I  D    L  +E + V P
Sbjct: 193 IIDNDSLLLLKKIENVSVTP 212

>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni Length = 172

Iteration: 1
 Score =  104 bits (259), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 58/130 (44%), Positives = 78/130 (60%), Gaps = 5/130 (3%)
Query: 59  TGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGD-PTHTGKGGN 114
            G I +EL  +  P+T ENF ALC  +    Y+ C FHR I  F+ Q GD     G GG 
Sbjct: 24  AGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQGGDFVKGDGTGGK 83
Query: 115 SIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDG 174
           SI+G+KF+DE    L+H   G++SMAN+GPNTN SQFFI       LD K+ +FG+V+DG
Sbjct: 84  SIYGRKFDDE-NFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDG 142
Query: 175 FETLDNLEKL 184
              +  +E +
Sbjct: 143 QNVVKKMESV 152

>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl Cis-Trans Isomerase, 541.M00136 Length = 201

Iteration: 1
 Score =  104 bits (259), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 56/140 (40%), Positives = 81/140 (57%), Gaps = 12/140 (8%)
Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTG-----DPTHTGK 111
           T  G + IEL  +  P+ C++FL LCA  Y++  IFHR I+ F++Q G      P+   +
Sbjct: 13  TTQGSLNIELHADMAPRACDSFLRLCAVKYFDDTIFHRCIRNFMIQGGRAELRQPSKKKE 72
Query: 112 GGNSIW-------GKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLK 164
              S         G  FEDEF   L H   G++SMAN+G ++N S+FFIT+ +  HL+ K
Sbjct: 73  VQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNK 132
Query: 165 YTIFGKVIDGFETLDNLEKL 184
           +TIFG+V+ G + L   EKL
Sbjct: 133 HTIFGRVVGGLDVLRQWEKL 152

>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin, 49.m03261 Length = 232

Iteration: 1
 Score =  104 bits (259), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 66/156 (42%), Positives = 83/156 (53%), Gaps = 21/156 (13%)
Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGG--N 114
           T  GD+ +EL+  +CP  C NF+ LC   YY   IFHR +K FIVQ GDPT TG+GG   
Sbjct: 28  TSLGDLDVELWARECPLACRNFVQLCLEGYYVNTIFHRVVKDFIVQGGDPTGTGRGGADT 87
Query: 115 SIWGKKFEDEFKETLKHSERGIVSMANNGPN--------------TNASQFFITYAAHAH 160
           +  GK F+ E    LK   RG+V +AN G +              TN +QFFIT A    
Sbjct: 88  TFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARADV 147
Query: 161 LDLKYTIFGKVIDGFETLDNLEK---LPVNPNHKPI 193
           L+  YT+FGKV     TL NL K   L V    +P+
Sbjct: 148 LNNAYTLFGKVTG--HTLYNLMKFNDLEVGKEDRPM 181

>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa In Complex With Cyclosporin A Length = 164

Iteration: 1
 Score =  103 bits (258), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 58/127 (45%), Positives = 79/127 (62%), Gaps = 5/127 (3%)
Query: 60  GDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPT-HTGKGGNS 115
           G I  +L+ E  PKT +NF  L    +   Y   IFHR I  F++Q GD T H G GG S
Sbjct: 17  GRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKS 76
Query: 116 IWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGF 175
           I+G+KF DE    +KH++ G++SMAN G NTN SQFFIT    + LD K+ +FG+VI+G 
Sbjct: 77  IYGEKFADE-NFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGL 135
Query: 176 ETLDNLE 182
           + +  +E
Sbjct: 136 DIVRKVE 142

>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa Length = 164

Iteration: 1
 Score =  103 bits (258), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 58/127 (45%), Positives = 79/127 (62%), Gaps = 5/127 (3%)
Query: 60  GDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPT-HTGKGGNS 115
           G I  +L+ E  PKT +NF  L    +   Y   IFHR I  F++Q GD T H G GG S
Sbjct: 18  GRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKS 77
Query: 116 IWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGF 175
           I+G+KF DE    +KH++ G++SMAN G NTN SQFFIT    + LD K+ +FG+VI+G 
Sbjct: 78  IYGEKFADE-NFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGL 136
Query: 176 ETLDNLE 182
           + +  +E
Sbjct: 137 DIVRKVE 143

>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent Loop Cyclophilin From Caenorhabditis Elegans Length = 173

Iteration: 1
 Score =  103 bits (256), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/136 (43%), Positives = 82/136 (60%), Gaps = 14/136 (10%)
Query: 59  TGDIKIELFCEDCPKTCENFLALCASD----------YYNGCIFHRNIKGFIVQTGDPTH 108
           +G I +EL+ +  PKT  NF ALC  +          ++ G  FHR I  F++Q GD T 
Sbjct: 17  SGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTR 76
Query: 109 -TGKGGNSIWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYT 166
             G GG SI+G+KF DE FKE  KH+  G++SMAN GPNTN SQFF+       LD K+ 
Sbjct: 77  GNGTGGESIYGEKFPDENFKE--KHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHV 134
Query: 167 IFGKVIDGFETLDNLE 182
           +FG+V++G + +  +E
Sbjct: 135 VFGRVVEGLDVVKAVE 150

>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human Peptidylprolyl Isomerase E Isoform 1 Length = 173

Iteration: 1
 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/128 (46%), Positives = 78/128 (60%), Gaps = 5/128 (3%)
Query: 59  TGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPT-HTGKGGN 114
            G I++ L  +  P T ENF  LC  +    + G  FHR I  F+ Q GD T H G GG 
Sbjct: 25  AGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGK 84
Query: 115 SIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDG 174
           SI+GKKF+DE    LKH+  G++SMAN+GPNTN SQFF+T      LD K+ +FG+V +G
Sbjct: 85  SIYGKKFDDE-NFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEG 143
Query: 175 FETLDNLE 182
            + L  +E
Sbjct: 144 LDVLRQIE 151

>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33) Length = 165

Iteration: 1
 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/128 (46%), Positives = 78/128 (60%), Gaps = 5/128 (3%)
Query: 59  TGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPT-HTGKGGN 114
            G I++ L  +  P T ENF  LC  +    + G  FHR I  F+ Q GD T H G GG 
Sbjct: 17  AGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGK 76
Query: 115 SIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDG 174
           SI+GKKF+DE    LKH+  G++SMAN+GPNTN SQFF+T      LD K+ +FG+V +G
Sbjct: 77  SIYGKKFDDE-NFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEG 135
Query: 175 FETLDNLE 182
            + L  +E
Sbjct: 136 LDVLRQIE 143

>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A, Ppia, Rv0009, From Mycobacterium Tuberculosis. Length = 191

Iteration: 1
 Score = 97.1 bits (240), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 61/153 (39%), Positives = 85/153 (55%), Gaps = 20/153 (13%)
Query: 57  THTGDIKIELFCEDCPKTCENFLALC---------------ASDYYNGCIFHRNIKGFIV 101
           T+ GDIKI LF    PKT  NF+ L                +  +Y+G +FHR I+GF++
Sbjct: 30  TNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMI 89
Query: 102 QTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHL 161
           Q GDPT TG+      G KF DEF   L+  +  +++MAN GP TN SQFFIT     HL
Sbjct: 90  QGGDPTGTGR---GGPGYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHL 146
Query: 162 DLKYTIFGKVIDG--FETLDNLEKLPVNPNHKP 192
           + ++TIFG+VID      ++ + K   + N +P
Sbjct: 147 NRRHTIFGEVIDAESQRVVEAISKTATDGNDRP 179

>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A Resolution Length = 174

Iteration: 1
 Score = 96.7 bits (239), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 58/128 (45%), Positives = 75/128 (58%), Gaps = 5/128 (3%)
Query: 59  TGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPT-HTGKGGN 114
            G I+  L  +  P T ENF  LC  +    + G  FHR I  F  Q GD T H G GG 
Sbjct: 26  AGRIQXLLRSDVVPXTAENFRCLCTHEKGFGFKGSSFHRIIPQFXCQGGDFTNHNGTGGK 85
Query: 115 SIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDG 174
           SI+GKKF+DE    LKH+  G++S AN+GPNTN SQFF+T      LD K+ +FG+V +G
Sbjct: 86  SIYGKKFDDE-NFILKHTGPGLLSXANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEG 144
Query: 175 FETLDNLE 182
            + L  +E
Sbjct: 145 LDVLRQIE 152

>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Length = 166

Iteration: 1
 Score = 73.9 bits (180), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 73/143 (51%), Gaps = 14/143 (9%)
Query: 54  GDP-----THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTH 108
           GDP     T  G+I++EL  +  P + +NF+    S +YN   FHR I GF++Q G  T 
Sbjct: 3   GDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTE 62
Query: 109 TGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNA-SQFFITYAAHAHL-----D 162
             +          ++E    L+++ RG ++MA      +A SQFFI  A +A L     D
Sbjct: 63  QMQ--QKKPNPPIKNEADNGLRNT-RGTIAMARTADKDSATSQFFINVADNAFLDHGQRD 119
Query: 163 LKYTIFGKVIDGFETLDNLEKLP 185
             Y +FGKV+ G +  D + ++P
Sbjct: 120 FGYAVFGKVVKGMDVADKISQVP 142

>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli Periplasmic Cyclophilin Length = 166

Iteration: 1
 Score = 73.6 bits (179), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 73/143 (51%), Gaps = 14/143 (9%)
Query: 54  GDP-----THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTH 108
           GDP     T  G+I++EL  +  P + +NF+    S +YN   FHR I GF++Q G  T 
Sbjct: 3   GDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTE 62
Query: 109 TGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNA-SQFFITYAAHAHL-----D 162
             +          ++E    L+++ RG ++MA      +A SQFFI  A +A L     D
Sbjct: 63  QMQ--QKKPNPPIKNEADNGLRNT-RGTIAMARTADKDSATSQFFINVADNAFLDHGQRD 119
Query: 163 LKYTIFGKVIDGFETLDNLEKLP 185
             Y +FGKV+ G +  D + ++P
Sbjct: 120 FGYAVFGKVVKGMDVADKISQVP 142

>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli Length = 164

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 73/139 (52%), Gaps = 16/139 (11%)
Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTG--DPTHTGKGGN 114
           T+ GDI I+ F +  P+T +NFL  C   +YN  IFHR I GF++Q G  +P    K   
Sbjct: 6   TNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQKATK 65
Query: 115 SIWGKKFEDEFKETLKHSERGIVSMAN-NGPNTNASQFFITYAAHAHLDLK--------Y 165
               +  ++E    LK++ RG ++MA    P++  +QFFI    +  L+          Y
Sbjct: 66  ----EPIKNEANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGY 120
Query: 166 TIFGKVIDGFETLDNLEKL 184
            +F +V+DG + +D ++ +
Sbjct: 121 CVFAEVVDGMDVVDKIKGV 139

>pdb|1LOP|A Chain A, Cyclophilin A Complexed With Succinyl-Ala-Pro-Ala-P-Nitroanilide Length = 164

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 73/139 (52%), Gaps = 16/139 (11%)
Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTG--DPTHTGKGGN 114
           T+ GDI I+ F +  P+T +NFL  C   +YN  IFHR I GF++Q G  +P    K   
Sbjct: 6   TNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQKATK 65
Query: 115 SIWGKKFEDEFKETLKHSERGIVSMAN-NGPNTNASQFFITYAAHAHLDLK--------Y 165
               +  ++E    LK++ RG ++MA    P++  +QFFI    +  L+          Y
Sbjct: 66  ----EPIKNEANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGY 120
Query: 166 TIFGKVIDGFETLDNLEKL 184
            +F +V+DG + +D ++ +
Sbjct: 121 CVFAEVVDGMDEVDKIKGV 139

>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Length = 167

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 68/138 (49%), Gaps = 14/138 (10%)
Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTG--DPTHTGKGGN 114
           T+ G IK+EL     PKT ENFL      +Y+G IFHR I GF++Q G  +P    K  +
Sbjct: 10  TNHGVIKLELDEAKAPKTVENFLNYVKKGHYDGTIFHRVINGFMIQGGGFEPGLKQKPTD 69
Query: 115 SIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLD--------LKYT 166
           +       +E    LK+    I     N P++  +QFFI    +  L+          Y 
Sbjct: 70  A----PIANEANNGLKNDTYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWGYA 125
Query: 167 IFGKVIDGFETLDNLEKL 184
           +FGKV++G + +D ++ +
Sbjct: 126 VFGKVVEGQDIVDKIKAV 143

>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme From Azotobacter Vinelandii With Sucafpfpna Peptide Length = 163

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 68/138 (49%), Gaps = 14/138 (10%)
Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTG--DPTHTGKGGN 114
           T+ G I ++LF +  P+T  NF       +Y+G IFHR I GF++Q G  +P    K   
Sbjct: 6   TNHGTITLKLFADKAPETAANFEQYVKDGHYDGTIFHRVIDGFMIQGGGFEPGMKQKSTR 65
Query: 115 SIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLD--------LKYT 166
           +      ++E    L + +  I       P++ ++QFFI    +A LD          Y 
Sbjct: 66  A----PIKNEANNGLSNKKYTIAMARTPDPHSASAQFFINVKDNAFLDHTAPTAHGWGYA 121
Query: 167 IFGKVIDGFETLDNLEKL 184
           +FG+V++G + +D ++ +
Sbjct: 122 VFGEVVEGTDVVDRIKSV 139

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	232
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	2e-89
2b71_A	196	Cyclophilin-like protein; structural genomics, str	5e-89
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	2e-88
2fu0_A	160	Cyclophilin, putative; PFE0505W, cyclosporin-bindi	2e-88
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	7e-88
2a2n_A	176	Peptidylprolyl isomerase domain and WD repeat CON;	1e-87
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	1e-86
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	1e-86
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	2e-86
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	2e-84
3bkp_A	232	Cyclophilin; malaria, isomerase, structural GENO s	5e-80
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	2e-69
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	3e-56
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	5e-56
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	8e-56
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	1e-55
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	2e-53
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	4e-52
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	7e-52
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	1e-51
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	1e-51
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	1e-51
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	6e-51
1z81_A	229	Cyclophilin; structural genomics, structural genom	8e-51
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	2e-50
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	2e-50
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	3e-50
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	4e-50
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	8e-50
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	1e-49
1lop_A	164	Cyclophilin A; rotamase, isomerase-isomerase inhib	6e-49
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	1e-48
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	4e-48
1v9t_A	166	Cyclophilin B; beta barrel, isomerase-isomerase in	4e-47
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	2e-41
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	3e-38
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A* Length = 161

 Score =  259 bits (665), Expect = 2e-89
 Identities = 108/138 (78%), Positives = 120/138 (86%), Gaps = 1/138 (0%)

Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T  GDIKIE+FCE  PKTCENFLALCAS+YYNGCIFHRNIKGF+VQTGDPT TG+GGNSI
Sbjct: 7   TDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRGGNSI 66

Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
           WGKKFEDE+ E LKH+ RG+VSMANNGPNTN SQFFITY    HLD+KYT+FGKVIDG E
Sbjct: 67  WGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLE 126

Query: 177 TLDNLEKLPVNP-NHKPI 193
           TLD LEKLPVN   ++P+
Sbjct: 127 TLDELEKLPVNEKTYRPL 144

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1 Length = 196

 Score =  259 bits (665), Expect = 5e-89
 Identities = 70/137 (51%), Positives = 92/137 (67%)

Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T+ GD ++EL+    PKTC NF  LC   +Y+  IFHR I  F++Q GDPT TGKGG SI
Sbjct: 45  TNLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQGGDPTGTGKGGKSI 104

Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
           +G+ FEDE  + LKH+  GI+SM+NNGPNTN+SQFFIT A   HLD K+TIF +V     
Sbjct: 105 YGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMT 164

Query: 177 TLDNLEKLPVNPNHKPI 193
            ++N+  +     +KPI
Sbjct: 165 CIENIASVQTTATNKPI 181

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A Length = 166

 Score =  257 bits (659), Expect = 2e-88
 Identities = 67/137 (48%), Positives = 89/137 (64%)

Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T  G I +EL+ +  PKTC+NF  L    YYNG  FHR IK F++Q GDPT TG+GG SI
Sbjct: 18  TSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRGGASI 77

Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
           +GK+FEDE    LK +  GI++MAN GP+TN SQFF+T A    LD K+TIFG+V  G  
Sbjct: 78  YGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIG 137

Query: 177 TLDNLEKLPVNPNHKPI 193
            ++ +  +  N   +P+
Sbjct: 138 MVNRVGMVETNSQDRPV 154

>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1 Length = 160

 Score =  257 bits (658), Expect = 2e-88
 Identities = 73/137 (53%), Positives = 92/137 (67%)

Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T  GDI I LF ++C KT +NF     + YYN CIFHR IK F+VQTGDP+  G GG SI
Sbjct: 12  TTMGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPSGDGTGGESI 71

Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
           WG +FEDEF + L HS+  +VSMAN GPNTN SQFFIT      LD K+T+FGKV  G +
Sbjct: 72  WGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSK 131

Query: 177 TLDNLEKLPVNPNHKPI 193
            + ++EK+  +   KP+
Sbjct: 132 IVLDIEKVRTDKRDKPL 148

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens} Length = 203

 Score =  257 bits (659), Expect = 7e-88
 Identities = 67/137 (48%), Positives = 89/137 (64%)

Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T  G I +EL+ +  PKTC+NF  L    YYNG  FHR IK F++Q GDPT TG+GG SI
Sbjct: 18  TSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRGGASI 77

Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
           +GK+FEDE    LK +  GI++MAN GP+TN SQFF+T A    LD K+TIFG+V  G  
Sbjct: 78  YGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIG 137

Query: 177 TLDNLEKLPVNPNHKPI 193
            ++ +  +  N   +P+
Sbjct: 138 MVNRVGMVETNSQDRPV 154

>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 176

 Score =  255 bits (654), Expect = 1e-87
 Identities = 74/138 (53%), Positives = 88/138 (63%), Gaps = 1/138 (0%)

Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T  GDI  +LF  +CPKT ENF     + YYNG  FHR IKGF++QTGDPT TG GG SI
Sbjct: 28  TSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESI 87

Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
           WG +FEDEF  TL+H     +SMAN G NTN SQFFIT      LD K+T+FG+V  G E
Sbjct: 88  WGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGME 147

Query: 177 TLDNLEKLPVNP-NHKPI 193
            +  +  + VNP   KP 
Sbjct: 148 VVQRISNVKVNPKTDKPY 165

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A Length = 185

 Score =  253 bits (648), Expect = 1e-86
 Identities = 86/141 (60%), Positives = 105/141 (74%), Gaps = 4/141 (2%)

Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T+ GD+K ELFC  CPK C+NFLAL AS YY   IFH+NIKGFI+Q GDPT TGKGG SI
Sbjct: 23  TNYGDLKFELFCSQCPKACKNFLALSASGYYKNTIFHKNIKGFIIQGGDPTGTGKGGESI 82

Query: 117 WGKKFEDEFKETLKHSERGIVSMANNG----PNTNASQFFITYAAHAHLDLKYTIFGKVI 172
           +G+ F+DE    LK+  RGI+SMA+ G    PNTN SQFFITY++   L+ +Y IFGK+I
Sbjct: 83  YGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGKLI 142

Query: 173 DGFETLDNLEKLPVNPNHKPI 193
           DGFETL+ LE  P + +HKPI
Sbjct: 143 DGFETLNTLENCPSDKSHKPI 163

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 197

 Score =  253 bits (649), Expect = 1e-86
 Identities = 75/138 (54%), Positives = 102/138 (73%), Gaps = 1/138 (0%)

Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T+ GD+ +EL C+  PKTCENF+ LC   YY+G IFHR+I+ F++Q GDPT TG GG S 
Sbjct: 26  TNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPTGTGTGGESY 85

Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
           WGK F+DEF+  L H+ RGI+SMAN+GPN+N SQFFIT+ + A+LD K+TIFG+V+ GF+
Sbjct: 86  WGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFD 145

Query: 177 TLDNLEKLPVNP-NHKPI 193
            L  +E +  +P   +P 
Sbjct: 146 VLTAMENVESDPKTDRPK 163

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens} Length = 185

 Score =  252 bits (647), Expect = 2e-86
 Identities = 68/162 (41%), Positives = 94/162 (58%), Gaps = 10/162 (6%)

Query: 42  FHRNIKGFIVQTGDPT-------HT--GDIKIELFCEDCPKTCENFLALCASDYYNGCIF 92
            H +  G + +  +P         T  GDI IEL+ ++ PK C NF+ LC   YY+  IF
Sbjct: 7   HHHHSSGLVPRGSEPPTNGKVLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIF 66

Query: 93  HRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFF 152
           HR + GFIVQ GDPT TG GG SI+G  F+DEF   L+ + RG+V+MAN G + N SQFF
Sbjct: 67  HRVVPGFIVQGGDPTGTGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFF 126

Query: 153 ITYAAHAHLDLKYTIFGKVI-DGFETLDNLEKLPVNPNHKPI 193
            T      L+ K+TIFGKV  D    +  L ++ ++ + +P 
Sbjct: 127 FTLGRADELNNKHTIFGKVTGDTVYNMLRLSEVDIDDDERPH 168

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii} Length = 201

 Score =  248 bits (635), Expect = 2e-84
 Identities = 58/149 (38%), Positives = 85/149 (57%), Gaps = 12/149 (8%)

Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTG-----DPTHTGK 111
           T  G + IEL  +  P+ C++FL LCA  Y++  IFHR I+ F++Q G      P+   +
Sbjct: 13  TTQGSLNIELHADMAPRACDSFLRLCAVKYFDDTIFHRCIRNFMIQGGRAELRQPSKKKE 72

Query: 112 GGNSI-------WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLK 164
              S         G  FEDEF   L H   G++SMAN+G ++N S+FFIT+ +  HL+ K
Sbjct: 73  VQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNK 132

Query: 165 YTIFGKVIDGFETLDNLEKLPVNPNHKPI 193
           +TIFG+V+ G + L   EKL  +   KP+
Sbjct: 133 HTIFGRVVGGLDVLRQWEKLETDKKDKPL 161

>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 232

 Score =  238 bits (609), Expect = 5e-80
 Identities = 63/155 (40%), Positives = 80/155 (51%), Gaps = 19/155 (12%)

Query: 58  HT--GDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGN- 114
           HT  GD+ +EL+  +CP  C NF+ LC   YY   IFHR +K FIVQ GDPT TG+GG  
Sbjct: 27  HTSLGDLDVELWARECPLACRNFVQLCLEGYYVNTIFHRVVKDFIVQGGDPTGTGRGGAD 86

Query: 115 -SIWGKKFEDEFKETLKHSERGIVSMANNGPN--------------TNASQFFITYAAHA 159
            +  GK F+ E    LK   RG+V +AN G +              TN +QFFIT A   
Sbjct: 87  TTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARAD 146

Query: 160 HLDLKYTIFGKVI-DGFETLDNLEKLPVNPNHKPI 193
            L+  YT+FGKV       L     L V    +P+
Sbjct: 147 VLNNAYTLFGKVTGHTLYNLMKFNDLEVGKEDRPM 181

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1 Length = 191

 Score =  210 bits (536), Expect = 2e-69
 Identities = 63/154 (40%), Positives = 87/154 (56%), Gaps = 20/154 (12%)

Query: 57  THTGDIKIELFCEDCPKTCENFLALC---------------ASDYYNGCIFHRNIKGFIV 101
           T+ GDIKI LF    PKT  NF+ L                +  +Y+G +FHR I+GF++
Sbjct: 30  TNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMI 89

Query: 102 QTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHL 161
           Q GDPT TG+GG    G KF DEF   L+  +  +++MAN GP TN SQFFIT     HL
Sbjct: 90  QGGDPTGTGRGG---PGYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHL 146

Query: 162 DLKYTIFGKVID--GFETLDNLEKLPVNPNHKPI 193
           + ++TIFG+VID      ++ + K   + N +P 
Sbjct: 147 NRRHTIFGEVIDAESQRVVEAISKTATDGNDRPT 180

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A Length = 179

 Score =  176 bits (449), Expect = 3e-56
 Identities = 63/146 (43%), Positives = 84/146 (57%), Gaps = 15/146 (10%)

Query: 60  GDIKIELFCEDCPKTCENFLALC-----------ASDYYNGCIFHRNIKGFIVQTGDPT- 107
           G +  ELF + CPKTCENF  LC              +Y  C+FHR +K F+VQ GD + 
Sbjct: 24  GRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSE 83

Query: 108 HTGKGGNSIWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYT 166
             G+GG SI+G  FEDE F   +KH++  ++SMAN G +TN SQFFIT     HLD  + 
Sbjct: 84  GNGRGGESIYGGFFEDESFA--VKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHV 141

Query: 167 IFGKVIDGFETLDNLEKLPVNPNHKP 192
           +FG+VI G E +  +E    +   KP
Sbjct: 142 VFGQVISGQEVVREIENQKTDAASKP 167

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens} Length = 192

 Score =  175 bits (447), Expect = 5e-56
 Identities = 64/146 (43%), Positives = 83/146 (56%), Gaps = 15/146 (10%)

Query: 60  GDIKIELFCEDCPKTCENFLALC-----------ASDYYNGCIFHRNIKGFIVQTGDPT- 107
           G I  +LF + CPKTC+NFL LC               Y G  FHR +K F++Q GD + 
Sbjct: 34  GRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSE 93

Query: 108 HTGKGGNSIWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYT 166
             GKGG SI+G  F+DE F   LKH    ++SMAN G +TN SQFFIT     HLD  + 
Sbjct: 94  GNGKGGESIYGGYFKDENFI--LKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHV 151

Query: 167 IFGKVIDGFETLDNLEKLPVNPNHKP 192
           +FG VI GFE ++ +E L  +   +P
Sbjct: 152 VFGLVISGFEVIEQIENLKTDAASRP 177

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A Length = 177

 Score =  175 bits (445), Expect = 8e-56
 Identities = 65/143 (45%), Positives = 85/143 (59%), Gaps = 12/143 (8%)

Query: 60  GDIKIELFCEDCPKTCENFLALCASDY--------YNGCIFHRNIKGFIVQTGDPT-HTG 110
           G +KIELF +  PKT ENF   C  ++        Y G  FHR IK F++Q GD     G
Sbjct: 25  GRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDG 84

Query: 111 KGGNSIWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFG 169
            G  SI+   F DE FK  L+HS  G++SMAN+GP+TN  QFFIT +    LD K+ +FG
Sbjct: 85  TGVASIYRGPFADENFK--LRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFG 142

Query: 170 KVIDGFETLDNLEKLPVNPNHKP 192
           K+IDG   +  +E +P  PN+KP
Sbjct: 143 KIIDGLLVMRKIENVPTGPNNKP 165

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A* Length = 177

 Score =  175 bits (445), Expect = 1e-55
 Identities = 65/146 (44%), Positives = 84/146 (57%), Gaps = 15/146 (10%)

Query: 60  GDIKIELFCEDCPKTCENFLALC-----------ASDYYNGCIFHRNIKGFIVQTGDPT- 107
           G I +EL+ +  P+TC NFL LC              +Y G  FHR IK F++Q GD T 
Sbjct: 21  GRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTK 80

Query: 108 HTGKGGNSIWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYT 166
             G GG SI+G  F+DE F   +KH E  +VSMAN GPNTN SQFFIT     HL+  + 
Sbjct: 81  GDGTGGESIYGGMFDDEEFV--MKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHV 138

Query: 167 IFGKVIDGFETLDNLEKLPVNPNHKP 192
           +FGKV+ G E +  +E L  N  ++P
Sbjct: 139 VFGKVVSGQEVVTKIEYLKTNSKNRP 164

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A* Length = 188

 Score =  169 bits (431), Expect = 2e-53
 Identities = 63/138 (45%), Positives = 81/138 (58%), Gaps = 7/138 (5%)

Query: 60  GDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPT-HTGKGGNS 115
           G +   LF +  PKT +NF+AL   +    Y    FHR IK F++Q GD T   G GG S
Sbjct: 30  GRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKS 89

Query: 116 IWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDG 174
           I+G++F DE FK  LKH   G VSMAN G +TN SQFFIT    A LD K+ +FGKV++G
Sbjct: 90  IYGERFPDENFK--LKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEG 147

Query: 175 FETLDNLEKLPVNPNHKP 192
            E +  +E    +   KP
Sbjct: 148 MEVVRKVESTKTDSRDKP 165

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A Length = 172

 Score =  165 bits (420), Expect = 4e-52
 Identities = 65/138 (47%), Positives = 84/138 (60%), Gaps = 8/138 (5%)

Query: 60  GDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPT-HTGKGGNS 115
           G I I LF +D P T ENF  LC  ++   Y   IFHR I+ F++Q GD T   G GG S
Sbjct: 26  GRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGKS 85

Query: 116 IWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDG 174
           I+G+KF DE     +KH   G +SMAN GPNTN SQFFIT A    LD ++ +FGKV+DG
Sbjct: 86  IYGEKFADENLN--VKHFV-GALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLDG 142

Query: 175 FETLDNLEKLPVNPNHKP 192
            + +  +EK   N + +P
Sbjct: 143 MDVVLRIEKTKTNSHDRP 160

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A* Length = 186

 Score =  165 bits (420), Expect = 7e-52
 Identities = 65/145 (44%), Positives = 80/145 (55%), Gaps = 15/145 (10%)

Query: 60  GDIKIELFCEDCPKTCENFLALC----------ASDYYNGCIFHRNIKGFIVQTGDPT-H 108
           G I +ELF +  P T ENF ALC              Y G  FHR I  F++Q GD T  
Sbjct: 34  GRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGDFTRG 93

Query: 109 TGKGGNSIWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTI 167
            G GG SI+G KF DE F     H    ++SMAN GPNTN SQFFIT      LD K+ +
Sbjct: 94  DGTGGESIYGSKFRDENFV--YTHDAPFLLSMANAGPNTNGSQFFITTVPCPWLDGKHVV 151

Query: 168 FGKVIDGFETLDNLEKLPVNPNHKP 192
           FGKV++G E + ++EK   + N KP
Sbjct: 152 FGKVLEGMEVVKSIEKCG-SQNGKP 175

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A* Length = 170

 Score =  164 bits (417), Expect = 1e-51
 Identities = 64/144 (44%), Positives = 82/144 (56%), Gaps = 14/144 (9%)

Query: 60  GDIKIELFCEDCPKTCENFLALCASD---------YYNGCIFHRNIKGFIVQTGDPT-HT 109
           G I  ELF +  P+TCENF ALC  +         +Y   IFHR I  F+ Q GD T   
Sbjct: 18  GRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGN 77

Query: 110 GKGGNSIWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIF 168
           G GG SI+G+ F DE F   +KH + G++SMAN GPNTN+SQFFIT      LD K+ +F
Sbjct: 78  GSGGESIYGRSFTDENFN--MKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVF 135

Query: 169 GKVIDGFETLDNLEKLPVNPNHKP 192
           GKVI+G   +  +EK     +   
Sbjct: 136 GKVIEGMNVVREMEKEGA-KSGYV 158

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score =  170 bits (432), Expect = 1e-51
 Identities = 68/146 (46%), Positives = 85/146 (58%), Gaps = 16/146 (10%)

Query: 60  GDIKIELFCEDCPKTCENFLALCASD-----------YYNGCIFHRNIKGFIVQTGDPT- 107
           G I +ELF +  PKT ENF ALC  +           ++ GC FHR IK F++Q GD + 
Sbjct: 30  GRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSN 89

Query: 108 HTGKGGNSIWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYT 166
             G GG SI+G+KFEDE F    KH + G++SMAN G NTN SQFFIT     HLD K+ 
Sbjct: 90  QNGTGGESIYGEKFEDENFH--YKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHV 147

Query: 167 IFGKVIDGFETLDNLEKLPVNPNHKP 192
           +FG+VI G      LE + V    KP
Sbjct: 148 VFGQVIKGMGVAKILENVEVK-GEKP 172

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A Length = 173

 Score =  164 bits (417), Expect = 1e-51
 Identities = 60/145 (41%), Positives = 83/145 (57%), Gaps = 15/145 (10%)

Query: 60  GDIKIELFCEDCPKTCENFLALC----------ASDYYNGCIFHRNIKGFIVQTGDPT-H 108
           G I +EL+ +  PKT  NF ALC             ++ G  FHR I  F++Q GD T  
Sbjct: 18  GRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRG 77

Query: 109 TGKGGNSIWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTI 167
            G GG SI+G+KF DE FK   KH+  G++SMAN GPNTN SQFF+       LD K+ +
Sbjct: 78  NGTGGESIYGEKFPDENFK--EKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVV 135

Query: 168 FGKVIDGFETLDNLEKLPVNPNHKP 192
           FG+V++G + +  +E    + + KP
Sbjct: 136 FGRVVEGLDVVKAVESNG-SQSGKP 159

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A Length = 172

 Score =  162 bits (413), Expect = 6e-51
 Identities = 60/138 (43%), Positives = 83/138 (60%), Gaps = 8/138 (5%)

Query: 60  GDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPT-HTGKGGNS 115
           G I +EL  +  P+T ENF ALC  +    Y+ C FHR I  F+ Q GD     G GG S
Sbjct: 25  GRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQGGDFVKGDGTGGKS 84

Query: 116 IWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDG 174
           I+G+KF+DE F+  L+H   G++SMAN+GPNTN SQFFI       LD K+ +FG+V+DG
Sbjct: 85  IYGRKFDDENFQ--LRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDG 142

Query: 175 FETLDNLEKLPVNPNHKP 192
              +  +E +  + + K 
Sbjct: 143 QNVVKKMESVG-SKSGKV 159

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1 Length = 229

 Score =  164 bits (416), Expect = 8e-51
 Identities = 64/146 (43%), Positives = 79/146 (54%), Gaps = 15/146 (10%)

Query: 60  GDIKIELFCEDCPKTCENFLALC--------ASDYYNGCIFHRNIKGFIVQTGDPT-HTG 110
           G  K ELF    PKT ENF   C            Y   IFHR IK F++Q GD   H G
Sbjct: 74  GKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHNG 133

Query: 111 KGGNSIWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFG 169
            G  SI+G+KF+DE F   +KH + G++SMAN+GPNTN  QFFIT      LD K  +FG
Sbjct: 134 SGSLSIYGEKFDDENFD--IKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFG 191

Query: 170 KVI--DGFETLDNLEKLPVNPNH-KP 192
           ++I  D    L  +E + V P   KP
Sbjct: 192 RIIDNDSLLLLKKIENVSVTPYIYKP 217

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ... Length = 165

 Score =  161 bits (409), Expect = 2e-50
 Identities = 61/131 (46%), Positives = 76/131 (58%), Gaps = 7/131 (5%)

Query: 60  GDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPT-HTGKGGNS 115
           G + +EL  +  PKT ENF ALC  +    Y G  FHR I  F+ Q GD T H G GG S
Sbjct: 18  GRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKS 77

Query: 116 IWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDG 174
           I+G +F DE F   LKH   G++SMAN GPNTN SQFFI       LD K+ +FG VI+G
Sbjct: 78  IYGSRFPDENFT--LKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEG 135

Query: 175 FETLDNLEKLP 185
            + +  +E   
Sbjct: 136 MDVVKKIESFG 146

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A Length = 173

 Score =  161 bits (409), Expect = 2e-50
 Identities = 62/138 (44%), Positives = 83/138 (60%), Gaps = 8/138 (5%)

Query: 60  GDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPT-HTGKGGNS 115
           G I++ L  +  P T ENF  LC  +    + G  FHR I  F+ Q GD T H G GG S
Sbjct: 26  GRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKS 85

Query: 116 IWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDG 174
           I+GKKF+DE F   LKH+  G++SMAN+GPNTN SQFF+T      LD K+ +FG+V +G
Sbjct: 86  IYGKKFDDENFI--LKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEG 143

Query: 175 FETLDNLEKLPVNPNHKP 192
            + L  +E    + + KP
Sbjct: 144 LDVLRQIEAQG-SKDGKP 160

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi} Length = 193

 Score =  161 bits (409), Expect = 3e-50
 Identities = 61/131 (46%), Positives = 81/131 (61%), Gaps = 7/131 (5%)

Query: 60  GDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPT-HTGKGGNS 115
           G I ++L  +  PKT +NF  LC       Y G  FHR I GF+VQ GD T H G GG S
Sbjct: 42  GRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMVQGGDYTAHNGTGGRS 101

Query: 116 IWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDG 174
           I+G+KF DE F+  LKH++ GI+SMAN G +TN SQFFIT      LD K+ +FG+V++G
Sbjct: 102 IYGEKFPDENFE--LKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEG 159

Query: 175 FETLDNLEKLP 185
            + +  + K  
Sbjct: 160 MDVVHKIAKYG 170

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus} Length = 234

 Score =  162 bits (412), Expect = 4e-50
 Identities = 32/166 (19%), Positives = 56/166 (33%), Gaps = 33/166 (19%)

Query: 60  GDIKIELFCEDCPKTCENFLALC--------------------ASDYYNGCIFHRNIKGF 99
           G ++I+LF +  P   ENF+ L                      +  Y GC FH  +   
Sbjct: 29  GRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTYEGCKFHNVLHNN 88

Query: 100 IVQTGDPT-HTGKGGNSIWGKKFEDEFKE--TLKHSERGIVSMA----NNGPNTNASQFF 152
            + +GD     G    +++  +            H  +G++S+      +G     S F 
Sbjct: 89  YIVSGDIYNSNGSSAGTVYCDEPIPPVFGDYFYPHESKGLLSLVPYTDESGNRYYDSTFM 148

Query: 153 ITYAAHA------HLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKP 192
           IT            LD    + G+V  G + LD +  +      + 
Sbjct: 149 ITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSMIKPYAGRK 194

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens} Length = 184

 Score =  160 bits (406), Expect = 8e-50
 Identities = 66/131 (50%), Positives = 81/131 (61%), Gaps = 7/131 (5%)

Query: 60  GDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPT-HTGKGGNS 115
           G +  ELF +  PKT ENF AL   +    Y G  FHR I GF+ Q GD T H G GG S
Sbjct: 37  GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKS 96

Query: 116 IWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDG 174
           I+G+KFEDE F   LKH+  GI+SMAN GPNTN SQFFI  A    LD K+ +FGKV +G
Sbjct: 97  IYGEKFEDENFI--LKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEG 154

Query: 175 FETLDNLEKLP 185
              ++ +E+  
Sbjct: 155 MNIVEAMERFG 165

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} PDB: 3o7t_A Length = 164

 Score =  159 bits (404), Expect = 1e-49
 Identities = 60/138 (43%), Positives = 84/138 (60%), Gaps = 8/138 (5%)

Query: 60  GDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPT-HTGKGGNS 115
           G I  +L+ E  PKT +NF  L    +   Y   IFHR I  F++Q GD T H G GG S
Sbjct: 17  GRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKS 76

Query: 116 IWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDG 174
           I+G+KF DE F+  +KH++ G++SMAN G NTN SQFFIT    + LD K+ +FG+VI+G
Sbjct: 77  IYGEKFADENFQ--VKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEG 134

Query: 175 FETLDNLEKLPVNPNHKP 192
            + +  +E    + + K 
Sbjct: 135 LDIVRKVEGKG-SASGKT 151

>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A Length = 164

 Score =  157 bits (399), Expect = 6e-49
 Identities = 43/142 (30%), Positives = 71/142 (50%), Gaps = 12/142 (8%)

Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T+ GDI I+ F +  P+T +NFL  C   +YN  IFHR I GF++Q G      K     
Sbjct: 6   TNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQK--A 63

Query: 117 WGKKFEDEFKETLKHSERGIVSMA-NNGPNTNASQFFITYAAHAHLDLK--------YTI 167
             +  ++E    LK+  RG ++MA    P++  +QFFI    +  L+          Y +
Sbjct: 64  TKEPIKNEANNGLKN-TRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCV 122

Query: 168 FGKVIDGFETLDNLEKLPVNPN 189
           F +V+DG + +D ++ +    +
Sbjct: 123 FAEVVDGMDEVDKIKGVATGRS 144

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} PDB: 3t1u_A* Length = 167

 Score =  156 bits (397), Expect = 1e-48
 Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 12/141 (8%)

Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T+ G IK+EL     PKT ENFL      +Y+G IFHR I GF++Q G      K   + 
Sbjct: 10  TNHGVIKLELDEAKAPKTVENFLNYVKKGHYDGTIFHRVINGFMIQGGGFEPGLKQKPT- 68

Query: 117 WGKKFEDEFKETLKHSERGIVSMA-NNGPNTNASQFFITYAAHAHLDLK--------YTI 167
                 +E    LK+ +   ++MA  N P++  +QFFI    +  L+          Y +
Sbjct: 69  -DAPIANEANNGLKN-DTYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWGYAV 126

Query: 168 FGKVIDGFETLDNLEKLPVNP 188
           FGKV++G + +D ++ +    
Sbjct: 127 FGKVVEGQDIVDKIKAVKTGS 147

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1 Length = 172

 Score =  155 bits (393), Expect = 4e-48
 Identities = 62/146 (42%), Positives = 80/146 (54%), Gaps = 10/146 (6%)

Query: 60  GDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPT-HTGKGGNS 115
           G I   LF +D PKT +NF  LC       Y    FHR I  F++Q GD T   G GG S
Sbjct: 22  GRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTGGRS 81

Query: 116 IWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVID- 173
           I+G KF DE F    KH ++GI+SMAN GPNTN SQFFIT A  + LD K+ +FG+V D 
Sbjct: 82  IYGDKFADENFS--RKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADE 139

Query: 174 -GFETLDNLEKLPV-NPNHKPIFFIT 197
             +  +  +E L   + + +      
Sbjct: 140 KSYSVVKEIEALGSSSGSVRSNTRPK 165

>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A Length = 166

 Score =  152 bits (386), Expect = 4e-47
 Identities = 43/139 (30%), Positives = 70/139 (50%), Gaps = 9/139 (6%)

Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T  G+I++EL  +  P + +NF+    S +YN   FHR I GF++Q G  T   +     
Sbjct: 11  TSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKKP- 69

Query: 117 WGKKFEDEFKETLKHSERGIVSMA-NNGPNTNASQFFITYAAHAHLD-----LKYTIFGK 170
                ++E    L++  RG ++MA     ++  SQFFI  A +A LD       Y +FGK
Sbjct: 70  -NPPIKNEADNGLRN-TRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGK 127

Query: 171 VIDGFETLDNLEKLPVNPN 189
           V+ G +  D + ++P +  
Sbjct: 128 VVKGMDVADKISQVPTHDV 146

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana} Length = 369

 Score =  144 bits (363), Expect = 2e-41
 Identities = 42/192 (21%), Positives = 71/192 (36%), Gaps = 43/192 (22%)

Query: 5   LHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKI 64
            + +    +I L   + P T  NF+ L    +Y+G    R   GF+VQTGDP    +  I
Sbjct: 183 PNIEDCVFRIVLDGYNAPVTAGNFVDLVERHFYDGMEIQR-SDGFVVQTGDPEGPAEGFI 241

Query: 65  ELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFED- 123
                               D        R +   I+ TG+           +G   E+ 
Sbjct: 242 --------------------DPSTEKT--RTVPLEIMVTGE-------KTPFYGSTLEEL 272

Query: 124 ---EFKETLKHSERGIVSMANNG--PNTNASQFFI-------TYAAHAHLDLKYTIFGKV 171
              + +  +  +  G ++MA      ++ +SQ F        T +    LD +Y +FG V
Sbjct: 273 GLYKAQVVIPFNAFGTMAMAREEFENDSGSSQVFWLLKESELTPSNSNILDGRYAVFGYV 332

Query: 172 IDGFETLDNLEK 183
            D  + L +L+ 
Sbjct: 333 TDNEDFLADLKV 344

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana} Length = 369

 Score =  135 bits (341), Expect = 3e-38
 Identities = 37/197 (18%), Positives = 62/197 (31%), Gaps = 64/197 (32%)

Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKG---- 112
                 +I L   + P T  NF+ L    +Y+G    R   GF+VQTGDP    +G    
Sbjct: 185 IEDCVFRIVLDGYNAPVTAGNFVDLVERHFYDGMEIQR-SDGFVVQTGDPEGPAEGFIDP 243

Query: 113 -----------------GNSIWGKKFED----EFKETLKHSERGIVSMANNG--PNTNAS 149
                                +G   E+    + +  +  +  G ++MA      ++ +S
Sbjct: 244 STEKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEFENDSGSS 303

Query: 150 QFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYT 209
           Q F                                           +T +    LD +Y 
Sbjct: 304 QVFWLLKESE------------------------------------LTPSNSNILDGRYA 327

Query: 210 IFGKVIDGLETLDNLEK 226
           +FG V D  + L +L+ 
Sbjct: 328 VFGYVTDNEDFLADLKV 344

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 9e-05
 Identities = 22/143 (15%), Positives = 48/143 (33%), Gaps = 32/143 (22%)

Query: 85  DYYNGC-IFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNG 143
             ++   +F  +    I     PT        IW    + +    +    +   S+    
Sbjct: 373 KMFDRLSVFPPSAH--I-----PTILLS---LIWFDVIKSDVMVVVNKLHK--YSLVEKQ 420

Query: 144 PNTNASQFFITYAAHA-HLDLK------YTIFGKVIDGFETLDNLEKLPVNPNHKPIFFI 196
           P  +      T +  + +L+LK      Y +   ++D +      +   + P +   +F 
Sbjct: 421 PKES------TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474

Query: 197 TYAAHAHL-----DLKYTIFGKV 214
           ++  H HL       + T+F  V
Sbjct: 475 SHIGH-HLKNIEHPERMTLFRMV 496

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	232
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	100.0
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	100.0
2fu0_A	160	Cyclophilin, putative; PFE0505W, cyclosporin-bindi	100.0
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	100.0
2b71_A	196	Cyclophilin-like protein; structural genomics, str	100.0
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	100.0
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	100.0
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	100.0
2a2n_A	176	Peptidylprolyl isomerase domain and WD repeat CON;	100.0
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	100.0
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	100.0
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	100.0
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	100.0
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	100.0
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	100.0
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	100.0
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	100.0
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	100.0
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	100.0
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	100.0
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	100.0
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	100.0
3bkp_A	232	Cyclophilin; malaria, isomerase, structural GENO s	100.0
4fru_A	185	Cyclophilin B, peptidyl-prolyl CIS-trans isomerase	100.0
1lop_A	164	Cyclophilin A; rotamase, isomerase-isomerase inhib	100.0
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	100.0
1v9t_A	166	Cyclophilin B; beta barrel, isomerase-isomerase in	100.0
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	100.0
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	100.0
1z81_A	229	Cyclophilin; structural genomics, structural genom	100.0
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	100.0
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	100.0
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	100.0
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	99.88
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	99.88
2fu0_A	160	Cyclophilin, putative; PFE0505W, cyclosporin-bindi	99.88
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	99.88
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	99.88
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	99.87
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	99.87
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	99.87
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	99.87
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	99.87
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	99.87
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	99.87
2b71_A	196	Cyclophilin-like protein; structural genomics, str	99.87
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	99.87
2a2n_A	176	Peptidylprolyl isomerase domain and WD repeat CON;	99.87
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	99.87
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	99.86
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	99.86
4fru_A	185	Cyclophilin B, peptidyl-prolyl CIS-trans isomerase	99.86
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	99.86
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	99.86
1v9t_A	166	Cyclophilin B; beta barrel, isomerase-isomerase in	99.86
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	99.86
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	99.86
1lop_A	164	Cyclophilin A; rotamase, isomerase-isomerase inhib	99.86
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	99.86
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	99.86
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	99.86
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	99.85
1z81_A	229	Cyclophilin; structural genomics, structural genom	99.83
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	99.82
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	99.82
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	99.82
3bkp_A	232	Cyclophilin; malaria, isomerase, structural GENO s	99.81
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.79
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	99.79

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A*

Probab=100.00  E-value=4.7e-50  Score=310.04  Aligned_cols=159  Identities=72%  Similarity=1.200  Sum_probs=147.1

Q ss_pred             CEEEEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhh
Q psy8249           1 MSVSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLA   80 (232)
Q Consensus         1 ~~v~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~   80 (232)
                      |+|+|+|++|+|+|+||++.||+|++||++||+.+||+++.||||+++||+||||++..|.                   
T Consensus         1 m~v~~~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~fhRvi~~f~iQgGd~~~~g~-------------------   61 (161)
T 2ok3_A            1 MSVTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGR-------------------   61 (161)
T ss_dssp             CEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEECCTTSSSS-------------------
T ss_pred             CEEEEEeCCccEEEEEcCCCCcHHHHHHHHHhhhcccCCCEEEEEECCCEEecCCCCCCCC-------------------
Confidence            9999999999999999999999999999999999999999999999999999999863331                   


Q ss_pred             hccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCC
Q psy8249          81 LCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAH  160 (232)
Q Consensus        81 l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~  160 (232)
                                                     ++.++++..+++|..+.++|+++|+|+||++++++++|||||+++++||
T Consensus        62 -------------------------------gg~si~g~~~~dE~~~~l~h~~~G~lsma~~gp~s~~SQFfI~~~~~~~  110 (161)
T 2ok3_A           62 -------------------------------GGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPH  110 (161)
T ss_dssp             -------------------------------CCCCTTSSCBCCCCCTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGG
T ss_pred             -------------------------------CCCcccCCccccccCcCcCcCCCeEEEEecCCCCCcceEEEEEcCCCCc
Confidence                                           2235567778888877899999999999999999999999999999999


Q ss_pred             CCCCccEEEEEeeccchhhhcccCCCCCC-CCceeeEEEeeeeecCCCCc
Q psy8249         161 LDLKYTIFGKVIDGFETLDNLEKLPVNPN-HKPIFFITYAAHAHLDLKYT  209 (232)
Q Consensus       161 ld~~~tvfG~VveG~dvl~~I~~~~~~~~-~~P~~~i~I~~~~~ld~~~~  209 (232)
                      ||++|+|||+|++|||+|++|++++++++ ++|..+|+|.+|..++++|.
T Consensus       111 Ldg~~tvFG~Vv~G~dvv~~I~~~~~~~~~~~P~~~v~I~~~~i~~~Pf~  160 (161)
T 2ok3_A          111 LDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIHANPFA  160 (161)
T ss_dssp             GTTTSCEEEEEEECHHHHHHHHTCCBCTTTCCBSSCCBEEEEEEECCSCC
T ss_pred             cCCCEeEEEEEeCCHHHHHHHHhCCccCCCCCcCCCeEEEEEEEecCCCC
Confidence            99999999999999999999999999987 99999999999999999874

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A

Probab=100.00  E-value=7.3e-49  Score=309.07  Aligned_cols=159  Identities=55%  Similarity=0.929  Sum_probs=145.3

Q ss_pred             CEEEEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhh
Q psy8249           1 MSVSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLA   80 (232)
Q Consensus         1 ~~v~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~   80 (232)
                      |.|.|+|++|+|+|+||++.||+||+||++||+.+||+++.||||+++||+||||++..|.                   
T Consensus        17 ~~v~i~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~g~-------------------   77 (185)
T 2poe_A           17 QGVRIITNYGDLKFELFCSQCPKACKNFLALSASGYYKNTIFHKNIKGFIIQGGDPTGTGK-------------------   77 (185)
T ss_dssp             CEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTEEEEEECTTSEEEEEETTSSSS-------------------
T ss_pred             eEEEEEecCccEEEEEeCCCCcHHHHHHHHHhccCCCCCCEEEEEECCCEEEcCCCCCCCC-------------------
Confidence            6899999999999999999999999999999999999999999999999999999763331                   


Q ss_pred             hccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccC----CCcccceEEeecc
Q psy8249          81 LCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNG----PNTNASQFFITYA  156 (232)
Q Consensus        81 l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~----~~~~~s~f~itl~  156 (232)
                                                     ++.++++..+++|..+.++|+++|+|+||+++    |++++|||||+++
T Consensus        78 -------------------------------gg~si~g~~~~dE~~~~l~h~~~G~lsmA~~g~~~~p~s~gSQFFIt~~  126 (185)
T 2poe_A           78 -------------------------------GGESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYS  126 (185)
T ss_dssp             -------------------------------CCCBTTBSCBCCCCCTTSCCCSTTEEEECCSCC-CCCSCBCSCEEEESS
T ss_pred             -------------------------------CCCccCCCcccccccCCCccCCCeEEEEecCCCCCCCCCccceEEEECC
Confidence                                           22345677788888778999999999999998    9999999999999


Q ss_pred             CCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCc
Q psy8249         157 AHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYT  209 (232)
Q Consensus       157 ~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~  209 (232)
                      ++|+||++|+|||+|++|||||++|++++++.+++|..+|+|.+|.+++++|.
T Consensus       127 ~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~v~I~~~~i~~dPf~  179 (185)
T 2poe_A          127 SLPQLNGEYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKDIVIHSNPIA  179 (185)
T ss_dssp             CCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTSCBSSCCEEEEEEEECCC--
T ss_pred             CCCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCcCCCeEEEEEEEECCCCC
Confidence            99999999999999999999999999999998999999999999999998875

>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1

Probab=100.00  E-value=1.4e-48  Score=301.17  Aligned_cols=155  Identities=48%  Similarity=0.775  Sum_probs=141.8

Q ss_pred             CEEEEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhh
Q psy8249           1 MSVSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLA   80 (232)
Q Consensus         1 ~~v~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~   80 (232)
                      +.|+|+|++|+|+|+||++.||+|++||++||+.+||+++.||||+++||+||||++..|                    
T Consensus         6 ~~v~~~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~fhRvi~~f~iQgGd~~~~g--------------------   65 (160)
T 2fu0_A            6 KSAIIYTTMGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPSGDG--------------------   65 (160)
T ss_dssp             CEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEECCTTSSS--------------------
T ss_pred             CEEEEEecCccEEEEEeCCCChHHHHHHHHHhccCccCCCEEEEEECCCEEEeCCcCCCC--------------------
Confidence            579999999999999999999999999999999999999999999999999999976322                    


Q ss_pred             hccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCC
Q psy8249          81 LCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAH  160 (232)
Q Consensus        81 l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~  160 (232)
                                                    .++.++++..+++|..+.++|+++|+|+||+++|++++|||||++.++||
T Consensus        66 ------------------------------~gg~si~g~~~~dE~~~~l~h~~~G~lsmA~~gp~s~~SQFfI~~~~~~~  115 (160)
T 2fu0_A           66 ------------------------------TGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPW  115 (160)
T ss_dssp             ------------------------------SCCCCTTSSCBCCCCBTTBCSSSSSEEEECCSSTTCBCSCEEEESSCCGG
T ss_pred             ------------------------------CCCCcccCCCccccccCCcccCCceEEEEecCCCCCcccEEEEECCCCCc
Confidence                                          12235667778889887899988999999999999999999999999999


Q ss_pred             CCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecC
Q psy8249         161 LDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLD  205 (232)
Q Consensus       161 ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld  205 (232)
                      ||++|+|||+|++|||||++|++++++++++|..+|+|.+|..++
T Consensus       116 Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~~~v~~  160 (160)
T 2fu0_A          116 LDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNIKINN  160 (160)
T ss_dssp             GTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCCBEEEEEEC-
T ss_pred             cCCCcEEEEEEEcCHHHHHHHHhCCcCCCCCcCCCeEEEEEEEeC
Confidence            999999999999999999999999999899999999999998764

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A

Probab=100.00  E-value=2.6e-48  Score=301.31  Aligned_cols=154  Identities=45%  Similarity=0.740  Sum_probs=141.8

Q ss_pred             CEEEEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhh
Q psy8249           1 MSVSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLA   80 (232)
Q Consensus         1 ~~v~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~   80 (232)
                      |.|.|+|++|+|+|+||++.||+|++||++||+.+||+++.||||+++||+|+||++..|.                   
T Consensus        12 ~~v~l~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~fhRvi~~f~iQgGd~~~~g~-------------------   72 (166)
T 2x7k_A           12 PNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGR-------------------   72 (166)
T ss_dssp             SEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHHTTTTTEECCEEETTTEEEECCTTSSSS-------------------
T ss_pred             CEEEEEeCCCcEEEEEccCCCCHHHHHHHHHHhcCCCCCCEEEEEECCCEEEcCCCCCCCC-------------------
Confidence            5799999999999999999999999999999999999999999999999999999763332                   


Q ss_pred             hccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCC
Q psy8249          81 LCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAH  160 (232)
Q Consensus        81 l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~  160 (232)
                                                     ++.++++..+++|..+.++|.++|+|+||+++|++++|||||+++++||
T Consensus        73 -------------------------------gg~si~g~~~~dE~~~~l~h~~~G~lsmAn~gp~s~gSQFfI~~~~~~~  121 (166)
T 2x7k_A           73 -------------------------------GGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQW  121 (166)
T ss_dssp             -------------------------------CCCCTTSSCBCCCCCTTSCCCSTTEEEECBSSTTCBCSCEEEESSCCGG
T ss_pred             -------------------------------CCCccCCCccccccccccCCCCCeEEEEeeCCCCCccceEEEECCCCCc
Confidence                                           2335567778888877899988999999999999999999999999999


Q ss_pred             CCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeec
Q psy8249         161 LDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHL  204 (232)
Q Consensus       161 ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~l  204 (232)
                      ||++|+|||+|++|||+|++|++.+++++++|..+|+|.+|.++
T Consensus       122 Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~P~~~i~I~~~~i~  165 (166)
T 2x7k_A          122 LDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAYPS  165 (166)
T ss_dssp             GTTTSCEEEEEEECHHHHHHHTTSCBCTTSCBSSCCEEEEEEEC
T ss_pred             cCCCeeEEEEEEcCHHHHHHHHcCCcCCCCCcCCCeEEEEEEEe
Confidence            99999999999999999999999999988999999999999865

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1

Probab=100.00  E-value=3.3e-48  Score=307.17  Aligned_cols=157  Identities=45%  Similarity=0.776  Sum_probs=141.6

Q ss_pred             CEEEEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhh
Q psy8249           1 MSVSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLA   80 (232)
Q Consensus         1 ~~v~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~   80 (232)
                      |.|.|+|++|+|+|+||++.||+||+||++||+.+||+++.||||+++||+||||++..|.                   
T Consensus        39 ~~V~l~T~~G~I~ieL~~~~aP~tv~NF~~L~~~g~Y~g~~FhRVi~~f~iQgGd~~~~g~-------------------   99 (196)
T 2b71_A           39 GYITIYTNLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQGGDPTGTGK-------------------   99 (196)
T ss_dssp             CEEEEEETTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEEEEEEETTTEEEEEETTSSSS-------------------
T ss_pred             cEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHhhcCCcCCCEEEEEeCCcEEEcCCCCCCCC-------------------
Confidence            5799999999999999999999999999999999999999999999999999999763332                   


Q ss_pred             hccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCC
Q psy8249          81 LCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAH  160 (232)
Q Consensus        81 l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~  160 (232)
                                                     ++.++++..+++|..+.++|+++|+|+||+++|++++|||||+++++||
T Consensus       100 -------------------------------gg~si~g~~~~dE~~~~l~h~~~G~lsMAn~gpns~gSQFFIt~~~~~~  148 (196)
T 2b71_A          100 -------------------------------GGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPH  148 (196)
T ss_dssp             -------------------------------CCCBTTBSCBCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGG
T ss_pred             -------------------------------CCCccCCCcccccccCCcCcCCCeEEEEccCCCCCcccEEEEECCCCCc
Confidence                                           2235566778888777899999999999999999999999999999999


Q ss_pred             CCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCC
Q psy8249         161 LDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLK  207 (232)
Q Consensus       161 ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~  207 (232)
                      ||++|+|||+|++|||||++|++++++.+++|..+|+|.+|.++++|
T Consensus       149 LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~i~I~~~~i~~dP  195 (196)
T 2b71_A          149 LDGKHTIFARVSKNMTCIENIASVQTTATNKPIFDLKILRTSTAVNA  195 (196)
T ss_dssp             GTTTSCEEEEEEECHHHHHHHHTSCBCTTCCBSSCCEEEEEEC----
T ss_pred             cCCCEeEEEEEecCHHHHHHHHhCCcCCCCCCCCCeEEEEEEEecCC
Confidence            99999999999999999999999999999999999999999998764

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1

Probab=100.00  E-value=5.8e-48  Score=305.73  Aligned_cols=159  Identities=51%  Similarity=0.926  Sum_probs=145.7

Q ss_pred             EEEEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhhh
Q psy8249           2 SVSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLAL   81 (232)
Q Consensus         2 ~v~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l   81 (232)
                      .|+|+|++|+|+|+||++.||+||+||++||+.+||+++.||||+++||+||||++..|.                    
T Consensus        21 ~v~l~T~~G~I~ieL~~~~aP~tv~NF~~L~~~g~Ydg~~FhRVi~~f~iQgGd~~~~g~--------------------   80 (197)
T 1zkc_A           21 YVRLHTNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPTGTGT--------------------   80 (197)
T ss_dssp             EEEEEETTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEEEEEEETTTEEEECCTTSSSS--------------------
T ss_pred             EEEEEeCCccEEEEEcCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCCEEEcCCCCCCCC--------------------
Confidence            589999999999999999999999999999999999999999999999999999763331                    


Q ss_pred             ccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCCC
Q psy8249          82 CASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHL  161 (232)
Q Consensus        82 ~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~l  161 (232)
                                                    ++.++++..+++|....++|+.+|+|+||+.++++++|||||++.++|+|
T Consensus        81 ------------------------------Gg~si~g~~f~dE~~~~l~h~~~G~lsMAn~gp~sngSQFFIt~~~~~~L  130 (197)
T 1zkc_A           81 ------------------------------GGESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYL  130 (197)
T ss_dssp             ------------------------------CCCBTTBSCBCCCCCTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGG
T ss_pred             ------------------------------CCCccCCCccccccCcCcCCCCceEEEEecCCCCCcccEEEEEcCCCCcc
Confidence                                          22345667788887778899999999999999999999999999999999


Q ss_pred             CCCccEEEEEeeccchhhhcccCCCCCC-CCceeeEEEeeeeecCCCCcc
Q psy8249         162 DLKYTIFGKVIDGFETLDNLEKLPVNPN-HKPIFFITYAAHAHLDLKYTI  210 (232)
Q Consensus       162 d~~~tvfG~VveG~dvl~~I~~~~~~~~-~~P~~~i~I~~~~~ld~~~~~  210 (232)
                      |++|+|||+|++|||||++|++++++.+ ++|..+|+|.+|++++++|.-
T Consensus       131 Dg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~~P~~~i~I~~~~v~~dPf~d  180 (197)
T 1zkc_A          131 DKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTVFVDPYEE  180 (197)
T ss_dssp             TTTSCEEEEEEECHHHHHHHHHSCBCTTTCCBSSCCEEEEEEEEECTTHH
T ss_pred             CCCccEEEEEEcCHHHHHHHHcCCCCCCCCCcCCCeEEEEEEEEcCCccc
Confidence            9999999999999999999999999987 999999999999999988764

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}

Probab=100.00  E-value=1.5e-47  Score=305.79  Aligned_cols=167  Identities=34%  Similarity=0.606  Sum_probs=141.5

Q ss_pred             EEEEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeC-----CCccccccceeccccCCCCcch
Q psy8249           2 SVSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTG-----DPTHTGDIKIELFCEDCPKTCE   76 (232)
Q Consensus         2 ~v~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~G-----d~t~~G~i~i~l~~~~~P~~~~   76 (232)
                      .|+|+|++|+|+|+||++.||+||+||++||+.+||+++.||||+++||+|||     |++..|...-.+|...      
T Consensus         8 ~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRvi~~f~iQgG~~~~~Dp~~~g~gg~si~~~~------   81 (201)
T 3bo7_A            8 YLRIVTTQGSLNIELHADMAPRACDSFLRLCAVKYFDDTIFHRCIRNFMIQGGRAELRQPSKKKEVQQSPRSIS------   81 (201)
T ss_dssp             EEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBEEEEETTTEEEECCGGGCCC-------CCSSCCC------
T ss_pred             EEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHhcCccCCCEEEEeeCCCEEEcCcccccCCCCCCCCCccccccc------
Confidence            58999999999999999999999999999999999999999999999999999     8764443222111100      


Q ss_pred             hhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeecc
Q psy8249          77 NFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYA  156 (232)
Q Consensus        77 ~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~  156 (232)
                                               + +           ..+..+++|..+.++|+.+|+|+||+++|++++|||||+++
T Consensus        82 -------------------------~-~-----------~~g~~f~dE~~~~l~h~~~G~lsmA~~gp~s~gSQFFIt~~  124 (201)
T 3bo7_A           82 -------------------------G-F-----------PGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFK  124 (201)
T ss_dssp             -------------------------S-S-----------TTCCCBCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESS
T ss_pred             -------------------------c-c-----------cCCCcccCcccCCCCcCCCcEEEEeeCCCCCcccEEEEECC
Confidence                                     0 0           01556778877789999999999999999999999999999


Q ss_pred             CCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCccc
Q psy8249         157 AHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYTIF  211 (232)
Q Consensus       157 ~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~~f  211 (232)
                      ++||||++|+|||+|++|||||++|++++++.+++|..+|+|.+|++++++|.-.
T Consensus       125 ~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~i~I~~~~v~~dPf~d~  179 (201)
T 3bo7_A          125 SCEHLNNKHTIFGRVVGGLDVLRQWEKLETDKKDKPLKPPKVEEIIVFKNPFEDA  179 (201)
T ss_dssp             CCGGGTTTSCEEEEEEECHHHHHHHTTCCBCTTSCBSSCCBEEEEEEEECCC---
T ss_pred             CCcccCCCceEEEEEecCHHHHHHHHhCCcCCCCCcCCCeEEEEEEEEcCCccCH
Confidence            9999999999999999999999999999999999999999999999999987643

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens}

Probab=100.00  E-value=1.4e-47  Score=304.66  Aligned_cols=162  Identities=43%  Similarity=0.681  Sum_probs=147.3

Q ss_pred             CEEEEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhh
Q psy8249           1 MSVSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLA   80 (232)
Q Consensus         1 ~~v~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~   80 (232)
                      |.|.|+|++|+|+|+||++.||+||+||++||+.+||+++.||||+++||+|+||++..|.                   
T Consensus        12 ~~V~l~T~~G~I~ieL~~d~aP~tv~NF~~L~~~g~Ydg~~FhRVi~~F~iQgGd~~~~g~-------------------   72 (203)
T 2k7n_A           12 PNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGR-------------------   72 (203)
T ss_dssp             SEEEEEESSCEEEEEECTTTCTTHHHHHHHHHHHTCGGGCEEEEEETTTEEEEECSSSSSS-------------------
T ss_pred             CEEEEEeCCCcEEEEEccCCCcHHHHHHHHHHhcCccCCCEEEEEeCCcEEEcCCCCCCCC-------------------
Confidence            5799999999999999999999999999999999999999999999999999999763332                   


Q ss_pred             hccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCC
Q psy8249          81 LCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAH  160 (232)
Q Consensus        81 l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~  160 (232)
                                                     ++.++++..+++|+.+.++|.++|+|+||+.++++++|||||++.++||
T Consensus        73 -------------------------------gg~si~g~~f~dE~~~~l~h~~~G~lsMAn~gpnsngSQFFIt~~~~~~  121 (203)
T 2k7n_A           73 -------------------------------GGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQW  121 (203)
T ss_dssp             -------------------------------CCCTTSCSCBCCCCCCSSCCCSSCEEEEEESSTTCEEEEEEEESSCCCS
T ss_pred             -------------------------------CCCccCCCcccccccccccCCCCeEEEEeeCCCCCcccEEEEEcCCCCc
Confidence                                           2234566778888877899988999999999999999999999999999


Q ss_pred             CCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCcccc
Q psy8249         161 LDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYTIFG  212 (232)
Q Consensus       161 ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~~fg  212 (232)
                      ||++|+|||+|++|||||++|++++++++++|..+|+|.+|.+++.+..--|
T Consensus       122 LDg~~tVFG~VveGmdvv~kI~~~~t~~~~~P~~~V~I~~~~v~~~~~s~~g  173 (203)
T 2k7n_A          122 LDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAYPSGGGGSGGG  173 (203)
T ss_dssp             STTTSCEEEEEESCHHHHHHHHSCCEEETTEECCCCBEEEEEECCCCCCCCC
T ss_pred             cCCCeeEEEEEEcCHHHHHHHHcCCcCCCCCcCCCeEEEEEEEEecCCCCCC
Confidence            9999999999999999999999999998899999999999999998765443

>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1

Probab=100.00  E-value=8.1e-47  Score=295.17  Aligned_cols=153  Identities=49%  Similarity=0.795  Sum_probs=139.6

Q ss_pred             CEEEEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhh
Q psy8249           1 MSVSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLA   80 (232)
Q Consensus         1 ~~v~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~   80 (232)
                      +.|+++|++|+|+|+||++.||+||+||++||+.+||+++.||||+++||+|+||++..|                    
T Consensus        22 ~~v~~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~g--------------------   81 (176)
T 2a2n_A           22 DSAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTG--------------------   81 (176)
T ss_dssp             SEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEECCTTSSS--------------------
T ss_pred             CEEEEEecCccEEEEEeCCCChHHHHHHHHHhhcCccCCCEEEEEECCcEEEccCCCCCC--------------------
Confidence            368999999999999999999999999999999999999999999999999999975322                    


Q ss_pred             hccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCC
Q psy8249          81 LCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAH  160 (232)
Q Consensus        81 l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~  160 (232)
                                                    .++.++++..+++|..+.++|+++|+|+||+.+|++++|||||++.++||
T Consensus        82 ------------------------------~gg~si~g~~~~dE~~~~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~  131 (176)
T 2a2n_A           82 ------------------------------MGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPW  131 (176)
T ss_dssp             ------------------------------SCCCCTTSSCBCCCCCTTCCSCSSSEEEECCSSTTCBCSCEEEESSCCGG
T ss_pred             ------------------------------CCCCcccCCccccccccccccCCceEEEEEeCCCCCcccEEEEECCCCCc
Confidence                                          12335667778888887899999999999999999999999999999999


Q ss_pred             CCCCccEEEEEeeccchhhhcccCCCC-CCCCceeeEEEeeeee
Q psy8249         161 LDLKYTIFGKVIDGFETLDNLEKLPVN-PNHKPIFFITYAAHAH  203 (232)
Q Consensus       161 ld~~~tvfG~VveG~dvl~~I~~~~~~-~~~~P~~~i~I~~~~~  203 (232)
                      ||++|+|||+|++|||||++|++++++ .+++|..+|+|.+|.+
T Consensus       132 LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~~P~~~v~I~~v~v  175 (176)
T 2a2n_A          132 LDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITV  175 (176)
T ss_dssp             GTTTSCEEEEEEECHHHHHHHHTSCBCTTTCCBSSCCBEEEEEE
T ss_pred             cCCCeeEEEEEeCCHHHHHHHHcCCccCCCCccCCCeEEEEEEE
Confidence            999999999999999999999999998 6899999999998854

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A

Probab=100.00  E-value=1.4e-46  Score=295.09  Aligned_cols=154  Identities=41%  Similarity=0.730  Sum_probs=134.8

Q ss_pred             CEEEE-EeCCeeEEEEeecCCCchhHHhHHHhhh-----------cCcccceeeeeecceeEEeeCCCccccccceeccc
Q psy8249           1 MSVSL-HTDVGDIKIELFCEDCPKTCENFLALCA-----------SDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFC   68 (232)
Q Consensus         1 ~~v~~-~t~~G~i~i~L~~~~~p~~~~nf~~l~~-----------~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~   68 (232)
                      |.|.+ +|++|+|+|+||++.||+||+||++||+           .+||+++.||||+++||||+||++.          
T Consensus        14 ~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~----------   83 (179)
T 2wfi_A           14 FDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSE----------   83 (179)
T ss_dssp             EEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECCTTT----------
T ss_pred             EEEEECCccceEEEEEEcCCCCChHHHHHHHHhcCCcCcccccccCCeECCCEEEEEECCCEEEcccccC----------
Confidence            34555 7899999999999999999999999996           5678888888888888888888641          


Q ss_pred             cCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCccc
Q psy8249          69 EDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNA  148 (232)
Q Consensus        69 ~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~  148 (232)
                                                             .++.++.++++..+++|.. .++|+++|+|+||+++|++++
T Consensus        84 ---------------------------------------~~g~gg~si~g~~f~dE~~-~~~h~~~G~lsMAn~gp~tng  123 (179)
T 2wfi_A           84 ---------------------------------------GNGRGGESIYGGFFEDESF-AVKHNKEFLLSMANRGKDTNG  123 (179)
T ss_dssp             ---------------------------------------SSSSCCCCTTSSCBCCCCC-CSCCCSTTEEEECCSSTTCBC
T ss_pred             ---------------------------------------CCCCCCCcccCCccccccc-CcCcCCCeEEEEEeCCCCCcc
Confidence                                                   1122344666777888865 688989999999999999999


Q ss_pred             ceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeec
Q psy8249         149 SQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHL  204 (232)
Q Consensus       149 s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~l  204 (232)
                      |||||++.++||||++|+|||+|++|||||++|++++++.+++|..+|+|.+|+.|
T Consensus       124 SQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~~G~l  179 (179)
T 2wfi_A          124 SQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL  179 (179)
T ss_dssp             SCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTSCBSSCEEEEEEEEC
T ss_pred             eEEEEEcCCCcccCCCeeEEEEEeCCHHHHHHHHcCCCCCCCCCCCCeEEEeCeeC
Confidence            99999999999999999999999999999999999999999999999999999976

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A

Probab=100.00  E-value=1.5e-46  Score=294.29  Aligned_cols=148  Identities=43%  Similarity=0.767  Sum_probs=133.6

Q ss_pred             eCCeeEEEEeecCCCchhHHhHHHhhhcCc--------ccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhh
Q psy8249           7 TDVGDIKIELFCEDCPKTCENFLALCASDY--------YNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENF   78 (232)
Q Consensus         7 t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~--------y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F   78 (232)
                      |++|+|+|+||++.||+||+||++||+.++        |+++.|||++++||+|+||++.                    
T Consensus        22 t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~g~~~~Y~g~~FhRvi~~f~iQgGd~~~--------------------   81 (177)
T 1mzw_A           22 QEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVN--------------------   81 (177)
T ss_dssp             EEEEEEEEEECTTTCHHHHHHHHHHHHTCCEETTEECSSTTCBCCEEETTTEEEECCTTT--------------------
T ss_pred             eeceeEEEEEcCCCCcHHHHHHHHHHhcccCCcCccceECCCEEEEEECCCEEEcCCccc--------------------
Confidence            679999999999999999999999999998        9999999999999999999751                    


Q ss_pred             hhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCC
Q psy8249          79 LALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAH  158 (232)
Q Consensus        79 ~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~  158 (232)
                                                   ..+.++.++++..+++|.. .++|+++|+|+||+++|++++|||||++.++
T Consensus        82 -----------------------------~~G~gg~si~g~~f~dE~~-~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~  131 (177)
T 1mzw_A           82 -----------------------------GDGTGVASIYRGPFADENF-KLRHSAPGLLSMANSGPSTNGCQFFITCSKC  131 (177)
T ss_dssp             -----------------------------SSSCCCCCTTSSCBCCCCC-CSCCCSTTEEEECCSSTTCBCSCEEEESSCC
T ss_pred             -----------------------------CCCCCCCccCCCcccCccc-ccccCCCCEEEEccCCCCCcceEEEEECCCC
Confidence                                         0112334566777888864 7889889999999999999999999999999


Q ss_pred             CCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeec
Q psy8249         159 AHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHL  204 (232)
Q Consensus       159 ~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~l  204 (232)
                      ||||++|+|||+|++|||||++|++++++.+++|..+|+|.+|+.|
T Consensus       132 ~~LDg~~~VFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~cG~l  177 (177)
T 1mzw_A          132 DWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM  177 (177)
T ss_dssp             GGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSCEEEEEEEEC
T ss_pred             CccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCCCCCEEEEeceeC
Confidence            9999999999999999999999999999989999999999999976

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens}

Probab=100.00  E-value=6.4e-46  Score=292.04  Aligned_cols=157  Identities=43%  Similarity=0.745  Sum_probs=142.9

Q ss_pred             EEEEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhhh
Q psy8249           2 SVSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLAL   81 (232)
Q Consensus         2 ~v~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l   81 (232)
                      .|.|+|++|+|+|+||++.||+|++||++||+.+||+++.||||+++||+|+||++..|.                    
T Consensus        26 ~V~l~T~~G~I~ieL~~~~aP~tv~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~g~--------------------   85 (185)
T 2hq6_A           26 KVLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTGTGS--------------------   85 (185)
T ss_dssp             EEEEEETTEEEEEEEBTTTCHHHHHHHHHHHHTTTTTTEECCEEETTTEEEECCTTSSSS--------------------
T ss_pred             EEEEEeCCccEEEEEeCCCCcHHHHHHHHHhhcCccCCCEEEEEECCCEEEcCCCCCCCC--------------------
Confidence            689999999999999999999999999999999999999999999999999999763221                    


Q ss_pred             ccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCCC
Q psy8249          82 CASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHL  161 (232)
Q Consensus        82 ~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~l  161 (232)
                                                    ++.++++..+++|..+.++|+.+|+|+||++++++++|||||+++++|+|
T Consensus        86 ------------------------------gg~si~g~~~~dE~~~~l~h~~~G~lsMA~~g~~s~gSQFFIt~~~~~~L  135 (185)
T 2hq6_A           86 ------------------------------GGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADEL  135 (185)
T ss_dssp             ------------------------------CCCCTTSSCBCCCCBTTBCSCSSSEEEECCSSTTCBCSCEEEESSCCGGG
T ss_pred             ------------------------------CCCcccCCccccccccCcccCCCeEEEEccCCCCCccceEEEECCCCCcc
Confidence                                          22355677788888778899999999999999999999999999999999


Q ss_pred             CCCccEEEEEeeccchh--hhcccCCCCCCCCceeeEEEeeeeecCCCCc
Q psy8249         162 DLKYTIFGKVIDGFETL--DNLEKLPVNPNHKPIFFITYAAHAHLDLKYT  209 (232)
Q Consensus       162 d~~~tvfG~VveG~dvl--~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~  209 (232)
                      |++|+|||+|+ |++++  ++|++++++.+++|..+|+|.+|+.++++|.
T Consensus       136 Dg~~tVFG~V~-G~~v~~~~~i~~~~~~~~~~P~~~v~I~~~~v~~~Pf~  184 (185)
T 2hq6_A          136 NNKHTIFGKVT-GDTVYNMLRLSEVDIDDDERPHNPHKIKSCEVLFNPFD  184 (185)
T ss_dssp             TTTSCEEEEEC-GGGHHHHHHTTCSCBCTTSCBSSCCEEEEEEEEECTTC
T ss_pred             CCCceEEEEEE-eCeeehhhHHhhCCcCCCCCCCCCeEEEEEEEeCCCCC
Confidence            99999999999 88875  6899999999999999999999999999874

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A*

Probab=100.00  E-value=3.2e-46  Score=292.63  Aligned_cols=153  Identities=43%  Similarity=0.721  Sum_probs=134.6

Q ss_pred             EEEE-EeCCeeEEEEeecCCCchhHHhHHHhhhc--------C---cccceeeeeecceeEEeeCCCccccccceecccc
Q psy8249           2 SVSL-HTDVGDIKIELFCEDCPKTCENFLALCAS--------D---YYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCE   69 (232)
Q Consensus         2 ~v~~-~t~~G~i~i~L~~~~~p~~~~nf~~l~~~--------~---~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~   69 (232)
                      .+.+ .|++|+|+|+||++.||+||+||++||+.        +   ||+++.||||+++||+|+||++.           
T Consensus        12 di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~~~~g~~~~Y~g~~FhRvi~~f~iQgGd~~~-----------   80 (177)
T 1a58_A           12 DVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTK-----------   80 (177)
T ss_dssp             EEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCCCTTCBEEEEETTTEEEECCCSS-----------
T ss_pred             EEEECCEeceeEEEEEcCCCCchHHHHHHHHhcCCcCcccccCCcceeCCCEEEEEECCCEEEeCCccC-----------
Confidence            3444 57899999999999999999999999985        3   89999999999999999998651           


Q ss_pred             CCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccc
Q psy8249          70 DCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNAS  149 (232)
Q Consensus        70 ~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s  149 (232)
                                                            .++.++.++++..+++|.. .++|+++|+|+||+++|++++|
T Consensus        81 --------------------------------------~~g~gg~si~g~~f~dE~~-~~~h~~~G~lsmAn~gp~tngS  121 (177)
T 1a58_A           81 --------------------------------------GDGTGGESIYGGMFDDEEF-VMKHDEPFVVSMANKGPNTNGS  121 (177)
T ss_dssp             --------------------------------------SSSSCCCCTTSSCBCCCCC-CSCCCSSSEEEECCSSTTCBCS
T ss_pred             --------------------------------------CCCCCCCcccCCcccCccc-CcccCCCeEEEEeeCCCCCcee
Confidence                                                  1122334566777778865 6889899999999999999999


Q ss_pred             eEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeec
Q psy8249         150 QFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHL  204 (232)
Q Consensus       150 ~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~l  204 (232)
                      ||||++.++||||++|+|||+|++|||||++|++++++++++|..+|+|.+|+.|
T Consensus       122 QFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~~~~~~~P~~~v~I~~~G~l  176 (177)
T 1a58_A          122 QFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL  176 (177)
T ss_dssp             CEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEEEEEE
T ss_pred             EEEEECCCCCccCCCEEEEEEEEcCHHHHHHHHhCCCCCCCcCCCCeEEEEeEEE
Confidence            9999999999999999999999999999999999999999999999999999987

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens}

Probab=100.00  E-value=5.4e-46  Score=294.08  Aligned_cols=156  Identities=42%  Similarity=0.717  Sum_probs=136.1

Q ss_pred             CEEEE-EeCCeeEEEEeecCCCchhHHhHHHhhh-----------cCcccceeeeeecceeEEeeCCCccccccceeccc
Q psy8249           1 MSVSL-HTDVGDIKIELFCEDCPKTCENFLALCA-----------SDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFC   68 (232)
Q Consensus         1 ~~v~~-~t~~G~i~i~L~~~~~p~~~~nf~~l~~-----------~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~   68 (232)
                      |+|.+ +|++|+|+|+||++.||+||+||++||+           .+||+++.||||+++||||+||++.          
T Consensus        24 ~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~k~~~Y~g~~FhRVi~~fmiQgGd~~~----------   93 (192)
T 2he9_A           24 FDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSE----------   93 (192)
T ss_dssp             EEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECCTTT----------
T ss_pred             EEEEECCEecceEEEEEcCCCCchHHHHHHHHhcCCCCcccccccCCeECCCEEEEEECCCEEEcCcccC----------
Confidence            45655 7899999999999999999999999995           5678888888888888888888641          


Q ss_pred             cCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCccc
Q psy8249          69 EDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNA  148 (232)
Q Consensus        69 ~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~  148 (232)
                                                             .++.++.++++..+++|.. .++|+++|+|+||+.+|++++
T Consensus        94 ---------------------------------------~~G~gg~siyg~~f~dE~~-~l~h~~~G~lsMAn~gp~tng  133 (192)
T 2he9_A           94 ---------------------------------------GNGKGGESIYGGYFKDENF-ILKHDRAFLLSMANRGKHTNG  133 (192)
T ss_dssp             ---------------------------------------SSSSCCCCTTSSCBCCCCC-CSCCCSTTEEEECCSSTTCBC
T ss_pred             ---------------------------------------CCCCCCCcccCCcccCccc-cCCCCCCeEEEEEeCCCCCcc
Confidence                                                   1223344667777888865 688989999999999999999


Q ss_pred             ceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCC
Q psy8249         149 SQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDL  206 (232)
Q Consensus       149 s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~  206 (232)
                      |||||++.++||||++|+|||+|++|||||++|++++++++++|..+|+|.+|+.|..
T Consensus       134 SQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~v~I~~~g~l~~  191 (192)
T 2he9_A          134 SQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVLAT  191 (192)
T ss_dssp             SCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEEEEECC-
T ss_pred             eEEEEEcCCCcccCCCccEEEEEEeCHHHHHHHHcCCcCCCCCCcCCeEEEEeEEEcc
Confidence            9999999999999999999999999999999999999999999999999999998863

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A

Probab=100.00  E-value=4.4e-46  Score=289.74  Aligned_cols=152  Identities=45%  Similarity=0.740  Sum_probs=136.1

Q ss_pred             CEEEE-EeCCeeEEEEeecCCCchhHHhHHHhh--hcCc-ccceeeeeecceeEEeeCCCc-cccccceeccccCCCCcc
Q psy8249           1 MSVSL-HTDVGDIKIELFCEDCPKTCENFLALC--ASDY-YNGCIFHRNIKGFIVQTGDPT-HTGDIKIELFCEDCPKTC   75 (232)
Q Consensus         1 ~~v~~-~t~~G~i~i~L~~~~~p~~~~nf~~l~--~~~~-y~~~~f~rvi~~f~iq~Gd~t-~~G~i~i~l~~~~~P~~~   75 (232)
                      |+|.+ +|++|+|+|+||++.||+|++||++||  +.+| |+++.|||++++||+||||.+ ..|               
T Consensus        16 ~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g---------------   80 (172)
T 2haq_A           16 FDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDG---------------   80 (172)
T ss_dssp             EEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBCCEEETTTEEEECCTTTSSS---------------
T ss_pred             EEEEECCEecceEEEEEeCCCCcHHHHHHHHHhccCCCcccCCCEEEEEECCCEEecCCccCCCC---------------
Confidence            45666 799999999999999999999999999  7899 999999999999999999943 111               


Q ss_pred             hhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeec
Q psy8249          76 ENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITY  155 (232)
Q Consensus        76 ~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl  155 (232)
                                                         .++.++++..+++|. ..++|. +|+|+||+++|++++|||||++
T Consensus        81 -----------------------------------~gg~si~g~~f~dE~-~~l~h~-~G~lsmAn~gp~tngSQFfIt~  123 (172)
T 2haq_A           81 -----------------------------------TGGKSIYGEKFADEN-LNVKHF-VGALSMANAGPNTNGSQFFITT  123 (172)
T ss_dssp             -----------------------------------SCCCCSSSSCBCCCC-CCSCCC-TTEEEECCSSTTCBCSCEEEES
T ss_pred             -----------------------------------CCCccccCCcccCcC-CCcccC-ceEEEEccCCCCCcccEEEEEC
Confidence                                               223456677788884 478887 9999999999999999999999


Q ss_pred             cCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeec
Q psy8249         156 AAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHL  204 (232)
Q Consensus       156 ~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~l  204 (232)
                      .++|+||++|+|||+|++|||||++|++++++++++|..+|+|.+|+.|
T Consensus       124 ~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~~g~l  172 (172)
T 2haq_A          124 APTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL  172 (172)
T ss_dssp             SCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSCEEEEEEEEC
T ss_pred             CCCCccCCCEeEEEEEeCCHHHHHHHHhCCcCCCCcCCCCeEEEEeEEC
Confidence            9999999999999999999999999999999988999999999999976

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A

Probab=100.00  E-value=9.5e-46  Score=288.33  Aligned_cols=148  Identities=41%  Similarity=0.675  Sum_probs=132.1

Q ss_pred             eCCeeEEEEeecCCCchhHHhHHHhhhc--Cc-ccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhhhcc
Q psy8249           7 TDVGDIKIELFCEDCPKTCENFLALCAS--DY-YNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCA   83 (232)
Q Consensus         7 t~~G~i~i~L~~~~~p~~~~nf~~l~~~--~~-y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~   83 (232)
                      |++|+|+|+||++.||+|++||++||+.  +| |+++.||||+++||+|+||++..                        
T Consensus        22 t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~------------------------   77 (172)
T 2cmt_A           22 GDAGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQGGDFVKG------------------------   77 (172)
T ss_dssp             EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBEEEEETTTEEEECCTTTS------------------------
T ss_pred             eecceEEEEEcCCCCCHHHHHHHHHhccCCCceECCCEEEEEECCCEEEcCCccCC------------------------
Confidence            8999999999999999999999999984  78 99999999999999999997510                        


Q ss_pred             CCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCCCCC
Q psy8249          84 SDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDL  163 (232)
Q Consensus        84 ~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~  163 (232)
                                               .+.++.++++..+++|.. .++|+++|+|+||+++|++++|||||++.++||||+
T Consensus        78 -------------------------~G~gg~si~g~~f~dE~~-~l~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg  131 (172)
T 2cmt_A           78 -------------------------DGTGGKSIYGRKFDDENF-QLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDG  131 (172)
T ss_dssp             -------------------------SSSCCCBTTBSCBCCCCC-CSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTT
T ss_pred             -------------------------CCCCCCccCCCccccccc-CcccCCceEEEEeeCCCCCcccEEEEECCCCCccCC
Confidence                                     112234556667778865 788988999999999999999999999999999999


Q ss_pred             CccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecC
Q psy8249         164 KYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLD  205 (232)
Q Consensus       164 ~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld  205 (232)
                      +|+|||+|++|||||++|++++++ +++|..+|+|.+|+.|+
T Consensus       132 ~~tvFG~Vv~G~dvv~~I~~~~~~-~~~P~~~v~I~~~g~l~  172 (172)
T 2cmt_A          132 KHVVFGRVVDGQNVVKKMESVGSK-SGKVKEPVIISRCGELI  172 (172)
T ss_dssp             TSCEEEEEEECHHHHHHGGGGCCT-TCCCSSCEEEEEEEEEC
T ss_pred             CeeEEEEEEcCHHHHHHHHhCCCC-CCCCCCCEEEEEeEeEC
Confidence            999999999999999999999885 78999999999999874

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1

Probab=100.00  E-value=1.1e-45  Score=291.90  Aligned_cols=151  Identities=42%  Similarity=0.712  Sum_probs=135.0

Q ss_pred             CEEEEEeCCeeEEEEeecCCCchhHHhHHHhh---------------hcCcccceeeeeecceeEEeeCCCcccccccee
Q psy8249           1 MSVSLHTDVGDIKIELFCEDCPKTCENFLALC---------------ASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIE   65 (232)
Q Consensus         1 ~~v~~~t~~G~i~i~L~~~~~p~~~~nf~~l~---------------~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~   65 (232)
                      +.|+|+|++|+|+|+||++.||+|++||++||               +.+||+++.||||+++|||||||++..|..   
T Consensus        24 ~~v~l~t~~G~I~ieL~~~~aP~tv~NF~~L~tG~~~~~~~~~g~~~~~~~Y~g~~FhRVi~~fmiQgGd~~g~G~g---  100 (191)
T 1w74_A           24 ATATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPTGTGRG---  100 (191)
T ss_dssp             EEEEEEETTEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCSSTTEEEEEEETTTEEEECCTTSSSSC---
T ss_pred             eEEEEEecceeEEEEEcCCCChHHHHHHHHHhcCCcccccccccccccCCccCCCEEEEEeCCCEEecCCCCCCCCC---
Confidence            46999999999999999999999999999999               457899999999999999999987533321   


Q ss_pred             ccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCC
Q psy8249          66 LFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPN  145 (232)
Q Consensus        66 l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~  145 (232)
                                                                     +   ++..+++|....++|+++|+|+||+++|+
T Consensus       101 -----------------------------------------------g---~g~~f~dE~~~~l~h~~~G~lsMAn~gpn  130 (191)
T 1w74_A          101 -----------------------------------------------G---PGYKFADEFHPELQFDKPYLLAMANAGPG  130 (191)
T ss_dssp             -----------------------------------------------C---SSCCBCCCCCTTCCSCSSSEEEECCSSTT
T ss_pred             -----------------------------------------------C---CCCccccccccCCCcCCCcEEEEeeCCCC
Confidence                                                           1   24567778767889999999999999999


Q ss_pred             cccceEEeeccCCCCCCCCccEEEEEee--ccchhhhcccCCCCCCCCceeeEEEeeeeec
Q psy8249         146 TNASQFFITYAAHAHLDLKYTIFGKVID--GFETLDNLEKLPVNPNHKPIFFITYAAHAHL  204 (232)
Q Consensus       146 ~~~s~f~itl~~~~~ld~~~tvfG~Vve--G~dvl~~I~~~~~~~~~~P~~~i~I~~~~~l  204 (232)
                      +++|||||++.++||||++|+|||+|++  |||||++|++++++.+++|..+|+|.+|+++
T Consensus       131 tngSQFFIt~~~~~~LDg~~tVFG~Vv~~~Gmdvv~~I~~~~t~~~~~P~~~v~I~~~~i~  191 (191)
T 1w74_A          131 TNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIESITIS  191 (191)
T ss_dssp             CBSSCEEEESSCCGGGTTTSCEEEEECSHHHHHHHHHHHTSCBCTTSCBSSCCEEEEEEEC
T ss_pred             CccceEEEEcCCCcccCCCeeEEEEEEECCCHHHHHHHHcCCcCCCCCcCCCeEEEEEEEC
Confidence            9999999999999999999999999999  9999999999999989999999999999864

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*

Probab=100.00  E-value=7.7e-46  Score=288.70  Aligned_cols=147  Identities=44%  Similarity=0.716  Sum_probs=130.4

Q ss_pred             eCCeeEEEEeecCCCchhHHhHHHhhh-cCc--------ccceeeeeecceeEEeeCCCccccccceeccccCCCCcchh
Q psy8249           7 TDVGDIKIELFCEDCPKTCENFLALCA-SDY--------YNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCEN   77 (232)
Q Consensus         7 t~~G~i~i~L~~~~~p~~~~nf~~l~~-~~~--------y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~   77 (232)
                      |++|+|+|+||++.||+||+||++||+ ++|        |+++.||||+++||+|+||++.                   
T Consensus        15 ~~~G~i~ieL~~~~aP~t~~NF~~L~~~~g~g~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~-------------------   75 (170)
T 1qng_A           15 SNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDITN-------------------   75 (170)
T ss_dssp             SEEEEEEEEECTTTCHHHHHHHHHHHHTCEECTTSSEECCTTCBCCEEETTTEEEECCTTT-------------------
T ss_pred             EeceeEEEEEcCCCCCHHHHHHHHHhccCCcCccCccceECCCEEEEEECCCEEEcCCccC-------------------
Confidence            459999999999999999999999998 588        9999999999999999999751                   


Q ss_pred             hhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccC
Q psy8249          78 FLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAA  157 (232)
Q Consensus        78 F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~  157 (232)
                                                    .++.++.++++..+++|.. .++|+++|+|+||+++|++++|||||++.+
T Consensus        76 ------------------------------~~g~gg~si~g~~f~dE~~-~l~h~~~G~lsmAn~gp~tngSQFfIt~~~  124 (170)
T 1qng_A           76 ------------------------------GNGSGGESIYGRSFTDENF-NMKHDQPGLLSMANAGPNTNSSQFFITLVP  124 (170)
T ss_dssp             ------------------------------SSSSCCCBTTBSCBCCCCC-CSCCCSTTEEEECCSSTTCBCSCEEEESSC
T ss_pred             ------------------------------CCCCCCccccCCccccccc-ccccCCCCEEEEeecCCCCcccEEEEECCC
Confidence                                          0112234566677778864 788988999999999999999999999999


Q ss_pred             CCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeec
Q psy8249         158 HAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHL  204 (232)
Q Consensus       158 ~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~l  204 (232)
                      +||||++|+|||+|++|||||++|+++++ .+++|..+|+|.+|+.|
T Consensus       125 ~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~t-~~~~P~~~v~I~~cG~l  170 (170)
T 1qng_A          125 CPWLDGKHVVFGKVIEGMNVVREMEKEGA-KSGYVKRSVVITDCGEL  170 (170)
T ss_dssp             CGGGTTTSCEEEEEEECHHHHHHHHTTCC-TTCCCSSCEEEEEEEEC
T ss_pred             CcccCCCeeEEEEEECCHHHHHHHHhCCC-CCCCCCCCeEEEeceeC
Confidence            99999999999999999999999999998 68999999999999976

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} SCOP: b.62.1.1 PDB: 3o7t_A

Probab=100.00  E-value=1.3e-45  Score=286.26  Aligned_cols=153  Identities=40%  Similarity=0.648  Sum_probs=136.7

Q ss_pred             CEEEEE-eCCeeEEEEeecCCCchhHHhHHHhhh--cCc-ccceeeeeecceeEEeeCCCccccccceeccccCCCCcch
Q psy8249           1 MSVSLH-TDVGDIKIELFCEDCPKTCENFLALCA--SDY-YNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCE   76 (232)
Q Consensus         1 ~~v~~~-t~~G~i~i~L~~~~~p~~~~nf~~l~~--~~~-y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~   76 (232)
                      |+|.++ |++|+|+|+||++.||+|++||++||+  .+| |+++.|||++++||+|+||.+.                  
T Consensus         7 ~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~------------------   68 (164)
T 3pmp_A            7 FNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTR------------------   68 (164)
T ss_dssp             EEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBEEEEETTTEEEECCTTT------------------
T ss_pred             EEEEECCEEeeEEEEEEeCCCCcHHHHHHHHHhcccCCCcccCCEEEEEECCCeEEeCCCCC------------------
Confidence            577885 999999999999999999999999999  888 9999999999999999999431                  


Q ss_pred             hhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeecc
Q psy8249          77 NFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYA  156 (232)
Q Consensus        77 ~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~  156 (232)
                                                     .++.++.++++..+++|. ..++|+++|+++||+.++++++|||||++.
T Consensus        69 -------------------------------~~g~gg~si~g~~~~dE~-~~l~h~~~G~lsma~~g~~t~~SQFfIt~~  116 (164)
T 3pmp_A           69 -------------------------------HNGTGGKSIYGEKFADEN-FQVKHTKPGLLSMANAGANTNGSQFFITTV  116 (164)
T ss_dssp             -------------------------------SSSSCCCBTTBSCBCCCC-CCSCCCSTTEEEECBSSTTCBCSCEEEESS
T ss_pred             -------------------------------CCCCCCcccCCccccccc-cccCcCCCcEEEEeeCCCCCcccEEEEECC
Confidence                                           011233456677788884 478998999999999999999999999999


Q ss_pred             CCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeec
Q psy8249         157 AHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHL  204 (232)
Q Consensus       157 ~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~l  204 (232)
                      ++||||++|+|||+|++|||||++|++++++ +++|..+|+|.+|+.|
T Consensus       117 ~~~~Ld~~~~vFG~Vv~G~~vv~~I~~~~~~-~~~P~~~v~I~~cg~l  163 (164)
T 3pmp_A          117 PTSWLDGKHVVFGEVIEGLDIVRKVEGKGSA-SGKTNATIKITDCGTV  163 (164)
T ss_dssp             CCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TCCCSSCEEEEEEEEC
T ss_pred             CChhhCCCccEEEEEeCCHHHHHHHHhCCCC-CCCcccCEEEEeCeEE
Confidence            9999999999999999999999999999887 7999999999999987

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...

Probab=100.00  E-value=1.3e-45  Score=286.11  Aligned_cols=149  Identities=42%  Similarity=0.683  Sum_probs=132.4

Q ss_pred             EeCCeeEEEEeecCCCchhHHhHHHhhh--cCc-ccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhhhc
Q psy8249           6 HTDVGDIKIELFCEDCPKTCENFLALCA--SDY-YNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALC   82 (232)
Q Consensus         6 ~t~~G~i~i~L~~~~~p~~~~nf~~l~~--~~~-y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~   82 (232)
                      .|++|+|+|+||++.||+|++||++||+  .+| |+++.||||+++||+|+||++..                       
T Consensus        14 ~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~-----------------------   70 (165)
T 2z6w_A           14 GKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNH-----------------------   70 (165)
T ss_dssp             TEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTS-----------------------
T ss_pred             CEeeeEEEEEEeCCCCcHHHHHHHHHhccCCCccCcCCEEEEEECCCEEEeCCccCC-----------------------
Confidence            4689999999999999999999999999  999 99999999999999999997520                       


Q ss_pred             cCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCCCC
Q psy8249          83 ASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLD  162 (232)
Q Consensus        83 ~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld  162 (232)
                                                ++.++.++++..+++|. ..++|.++|+|+||+.+|++++|||||++.++||||
T Consensus        71 --------------------------~g~gg~si~g~~f~dE~-~~l~h~~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ld  123 (165)
T 2z6w_A           71 --------------------------NGTGGKSIYGSRFPDEN-FTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLD  123 (165)
T ss_dssp             --------------------------SSSCCCBTTBSCBCCCC-CCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGT
T ss_pred             --------------------------CCCCCCcccCCcccCcc-cccccCCCCEEEEeeCCCCCcccEEEEEcCCCcccC
Confidence                                      11223355666777774 478898899999999999999999999999999999


Q ss_pred             CCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecC
Q psy8249         163 LKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLD  205 (232)
Q Consensus       163 ~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld  205 (232)
                      ++|+|||+|++|||||++|++.++ .+++|..+|+|.+|+.|.
T Consensus       124 g~~~vFG~Vv~G~dvv~~I~~~~~-~~~~P~~~v~I~~~g~l~  165 (165)
T 2z6w_A          124 GKHVVFGHVIEGMDVVKKIESFGS-KSGRTSKKIVITDCGQLS  165 (165)
T ss_dssp             TTSCEEEEEEECHHHHHHHHHTCC-TTSCCSSCEEEEEEEECC
T ss_pred             CCeeEEEEEEcCHHHHHHHHhCCC-CCCCCCCcEEEEEeEEEC
Confidence            999999999999999999999985 589999999999999873

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A

Probab=100.00  E-value=1.6e-45  Score=287.72  Aligned_cols=148  Identities=41%  Similarity=0.658  Sum_probs=130.7

Q ss_pred             eCCeeEEEEeecCCCchhHHhHHHhhhc--C--------cccceeeeeecceeEEeeCCCccccccceeccccCCCCcch
Q psy8249           7 TDVGDIKIELFCEDCPKTCENFLALCAS--D--------YYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCE   76 (232)
Q Consensus         7 t~~G~i~i~L~~~~~p~~~~nf~~l~~~--~--------~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~   76 (232)
                      |++|+|+|+||++.||+|++||++||+.  +        ||+++.||||+++||+|+||++.                  
T Consensus        15 ~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~g~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~------------------   76 (173)
T 2igv_A           15 KASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTR------------------   76 (173)
T ss_dssp             EEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTT------------------
T ss_pred             EecceEEEEEeCCCCcHHHHHHHHHhcCCCCCCccCccceECCCEEEEEECCCEEEcCCCCC------------------
Confidence            4599999999999999999999999987  4        79999999999999999998651                  


Q ss_pred             hhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeecc
Q psy8249          77 NFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYA  156 (232)
Q Consensus        77 ~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~  156 (232)
                                                     .++.++.++++..+++|.. .++|+++|+|+||+++|++++|||||++.
T Consensus        77 -------------------------------~~G~gg~siyg~~f~dE~~-~l~h~~~G~lsmAn~gp~tngSQFfIt~~  124 (173)
T 2igv_A           77 -------------------------------GNGTGGESIYGEKFPDENF-KEKHTGPGVLSMANAGPNTNGSQFFLCTV  124 (173)
T ss_dssp             -------------------------------SSSSCCCBTTBSCBCCCCC-CSCCCSTTEEEECCSSTTCBSSCEEEESS
T ss_pred             -------------------------------CCCCCCCccCCCcccCccc-ccCCCCCeEEEEeeCCCCCcceEEEEEcC
Confidence                                           1122334566777788865 78998899999999999999999999999


Q ss_pred             CCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecC
Q psy8249         157 AHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLD  205 (232)
Q Consensus       157 ~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld  205 (232)
                      ++||||++|+|||+|++|||||++|++++++ +++|..+|+|.+|+.|+
T Consensus       125 ~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~-~~~P~~~v~I~~~g~l~  172 (173)
T 2igv_A          125 KTEWLDGKHVVFGRVVEGLDVVKAVESNGSQ-SGKPVKDCMIADCGQLK  172 (173)
T ss_dssp             CCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TSCCSSCEEEEEEEEEC
T ss_pred             CccccCCCeeEEEEEecCHHHHHHHHhCCCC-CCCCCCCEEEEEeEEEc
Confidence            9999999999999999999999999999885 68999999999999986

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A

Probab=100.00  E-value=2e-45  Score=286.92  Aligned_cols=149  Identities=41%  Similarity=0.665  Sum_probs=131.8

Q ss_pred             EeCCeeEEEEeecCCCchhHHhHHHhhh--cCc-ccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhhhc
Q psy8249           6 HTDVGDIKIELFCEDCPKTCENFLALCA--SDY-YNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALC   82 (232)
Q Consensus         6 ~t~~G~i~i~L~~~~~p~~~~nf~~l~~--~~~-y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~   82 (232)
                      +|++|+|+|+||++.||+|++||++||+  .+| |+++.||||+++||+|+||++..                       
T Consensus        22 ~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~-----------------------   78 (173)
T 2r99_A           22 NKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNH-----------------------   78 (173)
T ss_dssp             TEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTS-----------------------
T ss_pred             CccceeEEEEECCCCCcHHHHHHHHHhcccCCceecCCEEEEeeCCCEEEeCCcCCC-----------------------
Confidence            3899999999999999999999999995  677 99999999999999999997510                       


Q ss_pred             cCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCCCC
Q psy8249          83 ASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLD  162 (232)
Q Consensus        83 ~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld  162 (232)
                                                .+.++.++++..+++|.. .++|+.+|+|+||+++|++++|||||++.++||||
T Consensus        79 --------------------------~g~gg~si~g~~f~dE~~-~l~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LD  131 (173)
T 2r99_A           79 --------------------------NGTGGKSIYGKKFDDENF-ILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLD  131 (173)
T ss_dssp             --------------------------SSSCCCBTTBSCBCCCCC-CSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGT
T ss_pred             --------------------------CCCCCCccCCCcccCccc-CcccCCCcEEEEccCCCCCcccEEEEECCCCCccC
Confidence                                      112233556667777754 78898999999999999999999999999999999


Q ss_pred             CCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecC
Q psy8249         163 LKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLD  205 (232)
Q Consensus       163 ~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld  205 (232)
                      ++|+|||+|++|||||++|++.+++ +++|..+|+|.+|+.|.
T Consensus       132 g~~tVFG~Vv~G~dvv~~I~~~~~~-~~~P~~~v~I~~cG~l~  173 (173)
T 2r99_A          132 GKHVVFGEVTEGLDVLRQIEAQGSK-DGKPKQKVIIADCGEYV  173 (173)
T ss_dssp             TTSCEEEEEEECHHHHHHHHTTCCT-TCCCSSCEEEEEEEECC
T ss_pred             CCeeEEEEEEcCHHHHHHHHhCCCC-CCCCCCCeEEEEeeeEC
Confidence            9999999999999999999999876 68999999999999874

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=100.00  E-value=1.2e-45  Score=291.48  Aligned_cols=156  Identities=40%  Similarity=0.671  Sum_probs=137.2

Q ss_pred             EEEE-EeCCeeEEEEeecCCCchhHHhHHHhhh--cCc-ccceeeeeecceeEEeeCCC-ccccccceeccccCCCCcch
Q psy8249           2 SVSL-HTDVGDIKIELFCEDCPKTCENFLALCA--SDY-YNGCIFHRNIKGFIVQTGDP-THTGDIKIELFCEDCPKTCE   76 (232)
Q Consensus         2 ~v~~-~t~~G~i~i~L~~~~~p~~~~nf~~l~~--~~~-y~~~~f~rvi~~f~iq~Gd~-t~~G~i~i~l~~~~~P~~~~   76 (232)
                      .|.+ .|++|+|+|+||++.||+||+||++||+  .+| |+++.||||+++||+||||. +..|                
T Consensus        21 di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g----------------   84 (188)
T 3ich_A           21 DLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDG----------------   84 (188)
T ss_dssp             EEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBCCEEETTTEEEECCTTTSSS----------------
T ss_pred             EEEECCEeceeEEEEEcCCCCcHHHHHHHHHhcccCCccccCCEEEEEECCCEEEcCCccCCCC----------------
Confidence            3444 3899999999999999999999999995  789 99999999999999999994 2211                


Q ss_pred             hhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeecc
Q psy8249          77 NFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYA  156 (232)
Q Consensus        77 ~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~  156 (232)
                                                        .++.++++..+++|. ..++|+++|+|+||++++++++|||||++.
T Consensus        85 ----------------------------------~gg~si~g~~f~dE~-~~l~h~~~G~lsmAn~gp~tngSQFfIt~~  129 (188)
T 3ich_A           85 ----------------------------------TGGKSIYGERFPDEN-FKLKHYGPGWVSMANAGKDTNGSQFFITTV  129 (188)
T ss_dssp             ----------------------------------SCCCBTTBSCBCCCC-CCSCCCSTTEEEECCSSTTCBCSCEEEESS
T ss_pred             ----------------------------------CCCccccCCcccccc-cCcccCCCeEEEEccCCCCCcccEEEEECC
Confidence                                              223456677788884 478898999999999999999999999999


Q ss_pred             CCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeec--CCCC
Q psy8249         157 AHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHL--DLKY  208 (232)
Q Consensus       157 ~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~l--d~~~  208 (232)
                      ++||||++|+|||+|++|||||++|++++++.+++|..+|+|.+|+.|  +++|
T Consensus       130 ~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~~~~P~~~v~I~~~~~l~~~~Pf  183 (188)
T 3ich_A          130 KTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKIEVEKPF  183 (188)
T ss_dssp             CCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEEEEEEEEEEEE
T ss_pred             CCcccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCeECCCEEEEEeEEEecCCCC
Confidence            999999999999999999999999999999988999999999999988  4444

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} SCOP: b.62.1.1 PDB: 3t1u_A*

Probab=100.00  E-value=2e-45  Score=286.28  Aligned_cols=151  Identities=31%  Similarity=0.498  Sum_probs=133.5

Q ss_pred             CEEEEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhh
Q psy8249           1 MSVSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLA   80 (232)
Q Consensus         1 ~~v~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~   80 (232)
                      |+|+|+|++|+|+|+||++.||+||+||++||+.+||+++.||||+++||+|+||++..+.                   
T Consensus         4 ~~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~~~-------------------   64 (167)
T 3s6m_A            4 SMVELHTNHGVIKLELDEAKAPKTVENFLNYVKKGHYDGTIFHRVINGFMIQGGGFEPGLK-------------------   64 (167)
T ss_dssp             CEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHHTTTTTEECCEEETTTEEEESSEETTTE-------------------
T ss_pred             cEEEEEeCCceEEEEEeCCCCcHHHHHHHHHhhhcccCCCEeEEecCCcEEEeccccCCCC-------------------
Confidence            7899999999999999999999999999999999999999999999999999999763210                   


Q ss_pred             hccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecc-cCCCcccceEEeeccCCC
Q psy8249          81 LCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMAN-NGPNTNASQFFITYAAHA  159 (232)
Q Consensus        81 l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~-~~~~~~~s~f~itl~~~~  159 (232)
                                                       .+.++..+++|....++| .+|+|+||+ .+|++++|||||++.+++
T Consensus        65 ---------------------------------~~~~~~~~~~E~~~~l~~-~~G~lsmA~~~~p~t~gSQFfI~~~~~~  110 (167)
T 3s6m_A           65 ---------------------------------QKPTDAPIANEANNGLKN-DTYTIAMARTNDPHSATAQFFINVNDNE  110 (167)
T ss_dssp             ---------------------------------ECCCCCCBCCCGGGCCCC-CTTEEEECCCSSTTCBCSCEEEESSCCG
T ss_pred             ---------------------------------CCCCCCccCCcccccccC-CccEEEEecCCCCCCccceEEEEcCCch
Confidence                                             001133456676656666 899999999 679999999999999999


Q ss_pred             CCCCC--------ccEEEEEeeccchhhhcccCCCCC----CCCceeeEEEeeeeec
Q psy8249         160 HLDLK--------YTIFGKVIDGFETLDNLEKLPVNP----NHKPIFFITYAAHAHL  204 (232)
Q Consensus       160 ~ld~~--------~tvfG~VveG~dvl~~I~~~~~~~----~~~P~~~i~I~~~~~l  204 (232)
                      |||++        |+|||+|++|||+|++|+++++++    +++|..+|+|.+|.+|
T Consensus       111 ~Ld~~~~~~~~~~~~VFG~Vv~G~dvv~~I~~~~t~~~~~~~~~P~~~v~I~~~~il  167 (167)
T 3s6m_A          111 FLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPNDDVVIEKAVVV  167 (167)
T ss_dssp             GGSCCSSSTTTCCCCEEEEEEECHHHHHHHTTSCBBC---CBTCBSSCCEEEEEEEC
T ss_pred             hcCCcccccCCCCceEEEEEEcCHHHHHHHHcCCcCCCcccCCCcCCCeEEEEEEEC
Confidence            99998        999999999999999999999987    6899999999999765

>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=100.00  E-value=4.3e-45  Score=296.44  Aligned_cols=158  Identities=42%  Similarity=0.668  Sum_probs=141.0

Q ss_pred             CEEEEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhh
Q psy8249           1 MSVSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLA   80 (232)
Q Consensus         1 ~~v~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~   80 (232)
                      ..|.|+|++|+|+|+||++.||+||+||++||+.+||+++.||||+++|||||||++..|..                  
T Consensus        22 ~~V~l~T~~G~I~ieL~~d~aP~tv~NF~~L~~~g~Ydgt~FhRVi~~FmiQgGdp~~~G~G------------------   83 (232)
T 3bkp_A           22 GKVVLHTSLGDLDVELWARECPLACRNFVQLCLEGYYVNTIFHRVVKDFIVQGGDPTGTGRG------------------   83 (232)
T ss_dssp             CEEEEEETTEEEEEEEBTTTCHHHHHHHHHHHHHTTTTTCBEEEEETTTEEEECCTTSSSSC------------------
T ss_pred             CEEEEEECCCcEEEEEcCCCCcHHHHHHHHHhhcCccCCCEEEEEeCCCEEEcCCCCCCCCC------------------
Confidence            36999999999999999999999999999999999999999999999999999998743321                  


Q ss_pred             hccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccC--CCCCcccccccccccccceEEecccCC--------------
Q psy8249          81 LCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIW--GKKFEDEFKETLKHSERGIVSMANNGP--------------  144 (232)
Q Consensus        81 l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~--~~~~~~e~~~~l~~~~~g~v~~~~~~~--------------  144 (232)
                                                      +.+++  +..+++|..+.++|+.+|+|+||+.++              
T Consensus        84 --------------------------------g~si~~~g~~f~dE~~~~l~h~~~G~lsMA~~g~~~~~~~n~e~g~~~  131 (232)
T 3bkp_A           84 --------------------------------GADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSL  131 (232)
T ss_dssp             --------------------------------CCCCTTTTCCBCCCCCTTCCCCSTTEEEECCCC---------------
T ss_pred             --------------------------------CCccccCCCccCCccccCcCcCCCeEEEEeccCCcccccccccccccC
Confidence                                            22334  566778887788999999999999987              


Q ss_pred             CcccceEEeeccCCCCCCCCccEEEEEeeccch--hhhcccCCCCCCCCceeeEEEeeeeecCCCCc
Q psy8249         145 NTNASQFFITYAAHAHLDLKYTIFGKVIDGFET--LDNLEKLPVNPNHKPIFFITYAAHAHLDLKYT  209 (232)
Q Consensus       145 ~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dv--l~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~  209 (232)
                      ++++|||||+++++|+||++|+|||+|+ ||++  +++|++++++.+++|..+|+|.+|++++++|.
T Consensus       132 ~sngSQFFIt~~~~p~LDg~~tVFG~Vv-g~~v~~v~kI~~~~t~~~~~P~~~i~I~~~~vl~dPf~  197 (232)
T 3bkp_A          132 GTNGNQFFITLARADVLNNAYTLFGKVT-GHTLYNLMKFNDLEVGKEDRPMTPPFIKSVDVLWNPFE  197 (232)
T ss_dssp             -CBCSCEEEESSCCGGGTTTSCEEEEEC-GGGHHHHHHHTTSCBCGGGCBSSCCBEEEEEEEECCCT
T ss_pred             CCcCCEEEEECCCCcccCCCccEEEEEE-eCchHHHHHHHcCCcCCCCCcCCCeEEEEEEEEcCChh
Confidence            5999999999999999999999999999 7776  88999999999999999999999999999875

>4fru_A Cyclophilin B, peptidyl-prolyl CIS-trans isomerase; cyclophilin-type ppiase, peptidyl-prolyl CIS-trans isomerase chaperone, foldase; HET: ME2 PEG; 1.10A {Equus caballus} PDB: 4frv_A* 3ich_A 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=100.00  E-value=3.6e-45  Score=288.82  Aligned_cols=153  Identities=42%  Similarity=0.672  Sum_probs=135.6

Q ss_pred             eCCeeEEEEeecCCCchhHHhHHHhhhc--C-cccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhhhcc
Q psy8249           7 TDVGDIKIELFCEDCPKTCENFLALCAS--D-YYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCA   83 (232)
Q Consensus         7 t~~G~i~i~L~~~~~p~~~~nf~~l~~~--~-~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~   83 (232)
                      |++|+|+|+||++.||+||+||++||+.  + +|+++.|||++++||+||||++.                         
T Consensus        24 ~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~~-------------------------   78 (185)
T 4fru_A           24 EDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTR-------------------------   78 (185)
T ss_dssp             EEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCCSTTCBCCEEETTTEEEECCTTT-------------------------
T ss_pred             EecceEEEEEeCCCCcHHHHHHHHHHhcCCCCeEcCCEEEEeeCCCeEEECCCCC-------------------------
Confidence            5699999999999999999999999976  5 79999999999999999999751                         


Q ss_pred             CCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCCCCC
Q psy8249          84 SDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDL  163 (232)
Q Consensus        84 ~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~  163 (232)
                                              ..+.++.++++..+++|.. .++|+++|+|+||+.++++++|||||+++++||||+
T Consensus        79 ------------------------~~g~gg~si~g~~f~de~~-~~~h~~~G~lsma~~gp~t~~SQFfI~~~~~~~Ld~  133 (185)
T 4fru_A           79 ------------------------GDGTGGKSIYGERFPDENF-KLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDG  133 (185)
T ss_dssp             ------------------------SSSSCCCBTTBSCBCCCCC-CSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTT
T ss_pred             ------------------------CCCCCCccccCCccCcccc-ccCcCCCeEEEEeeCCCCCcceEEEEEeCCCcccCC
Confidence                                    1122344566777888865 788989999999999999999999999999999999


Q ss_pred             CccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeec--CCCCc
Q psy8249         164 KYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHL--DLKYT  209 (232)
Q Consensus       164 ~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~l--d~~~~  209 (232)
                      +|+|||+|++|||||++|++++++.+++|..+|+|.+|+.|  +++|+
T Consensus       134 ~~~vFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~~g~l~~~~Pf~  181 (185)
T 4fru_A          134 KHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIADCGKIEVEKPFA  181 (185)
T ss_dssp             TSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEEEEEEEEEEEEE
T ss_pred             CccEEEEEeCCHHHHHHHHhCCCCCCCcCCCCEEEEEceEEecCCCCc
Confidence            99999999999999999999999999999999999999977  34444

>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A

Probab=100.00  E-value=2e-45  Score=285.13  Aligned_cols=151  Identities=30%  Similarity=0.587  Sum_probs=133.1

Q ss_pred             EEEEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhhh
Q psy8249           2 SVSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLAL   81 (232)
Q Consensus         2 ~v~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l   81 (232)
                      .|+|+|++|+|+|+||++.||+||+||++||+.+||+++.||||+++||+|+||++. |.                    
T Consensus         1 ~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~-~~--------------------   59 (164)
T 1lop_A            1 MVTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEP-GM--------------------   59 (164)
T ss_dssp             CEEEEETTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEECCEEETTTEEEESSEET-TT--------------------
T ss_pred             CEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCceEecCCccc-CC--------------------
Confidence            389999999999999999999999999999999999999999999999999999762 10                    


Q ss_pred             ccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEeccc-CCCcccceEEeeccCCCC
Q psy8249          82 CASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANN-GPNTNASQFFITYAAHAH  160 (232)
Q Consensus        82 ~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~-~~~~~~s~f~itl~~~~~  160 (232)
                                                     +.++++..+++|..+.++| .+|+|+||++ +|++++|||||++.+++|
T Consensus        60 -------------------------------g~~~~g~~~~dE~~~~l~~-~~G~lsmA~~~~p~s~gSQFfI~~~~~~~  107 (164)
T 1lop_A           60 -------------------------------KQKATKEPIKNEANNGLKN-TRGTLAMARTQAPHSATAQFFINVVDNDF  107 (164)
T ss_dssp             -------------------------------EECCCCCCBCCCCCSSCCC-CTTEEEECCCSSTTCBCSCEEEESSCCGG
T ss_pred             -------------------------------CcCCCCCcccccccccccc-CccEEEEeecCCCCCccceEEEEcCCccc
Confidence                                           0012345677777666777 6999999974 799999999999999999


Q ss_pred             CCCC--------ccEEEEEeeccchhhhcccCCCCC----CCCceeeEEEeeeeecC
Q psy8249         161 LDLK--------YTIFGKVIDGFETLDNLEKLPVNP----NHKPIFFITYAAHAHLD  205 (232)
Q Consensus       161 ld~~--------~tvfG~VveG~dvl~~I~~~~~~~----~~~P~~~i~I~~~~~ld  205 (232)
                      ||++        |+|||+|++|||||++|+++++++    +++|..+|+|.+|..++
T Consensus       108 Ld~~~~~~~~~~~tvFG~Vv~G~dvv~~I~~~~t~~~~~~~~~P~~~v~I~~~~v~~  164 (164)
T 1lop_A          108 LNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVIIESVTVSE  164 (164)
T ss_dssp             GSCCSSSTTTSCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEESSCCEEEEEEECC
T ss_pred             cCCccccccCCceEEEEEEecCHHHHHHHHhCCcCCccccCCCcCCCeEEEEEEEeC
Confidence            9998        999999999999999999999875    58999999999998864

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*

Probab=100.00  E-value=1.3e-44  Score=284.74  Aligned_cols=146  Identities=45%  Similarity=0.703  Sum_probs=128.1

Q ss_pred             eCCeeEEEEeecCCCchhHHhHHHhhh--cCc--------ccceeeeeecceeEEeeCCCccccccceeccccCCCCcch
Q psy8249           7 TDVGDIKIELFCEDCPKTCENFLALCA--SDY--------YNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCE   76 (232)
Q Consensus         7 t~~G~i~i~L~~~~~p~~~~nf~~l~~--~~~--------y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~   76 (232)
                      |++|+|+|+||++.||+||+||++||+  .+|        |+++.||||+++||+|+||++.                  
T Consensus        31 t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~Y~g~~FhRVi~~f~iQgGd~~~------------------   92 (186)
T 2poy_A           31 TPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGDFTR------------------   92 (186)
T ss_dssp             EEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTT------------------
T ss_pred             EecccEEEEEeCCCCcHHHHHHHHHhcccCCccccCccceECCCEEEEEeCCCEEEeCCCCC------------------
Confidence            559999999999999999999999996  577        9999999999999999999751                  


Q ss_pred             hhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeecc
Q psy8249          77 NFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYA  156 (232)
Q Consensus        77 ~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~  156 (232)
                                                     .++.++.++++..+++|.. .++|.++|+|+||+++|++++|||||++.
T Consensus        93 -------------------------------~~G~gg~si~g~~f~dE~~-~l~h~~~G~lsMAn~gpntngSQFFIt~~  140 (186)
T 2poy_A           93 -------------------------------GDGTGGESIYGSKFRDENF-VYTHDAPFLLSMANAGPNTNGSQFFITTV  140 (186)
T ss_dssp             -------------------------------SSSSCCCCTTC-CBCCCCC-CSCCCSTTEEEECCSSTTCBCSCEEEESS
T ss_pred             -------------------------------CCCCCCCccCCCcccCccc-ccccCCCcEEEEeeCCCCCcccEEEEECC
Confidence                                           0122334566777788864 78898899999999999999999999999


Q ss_pred             CCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeee
Q psy8249         157 AHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAH  203 (232)
Q Consensus       157 ~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~  203 (232)
                      ++|+||++|+|||+|++|||||++|+++++ .+++|..+|+|.+|+.
T Consensus       141 ~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t-~~~~P~~~v~I~~cG~  186 (186)
T 2poy_A          141 PCPWLDGKHVVFGKVLEGMEVVKSIEKCGS-QNGKPTKSVCITASGV  186 (186)
T ss_dssp             CCGGGTTTSCEEEEEEECHHHHHHHHHTCC-TTSCCSSCEEEEEEEC
T ss_pred             CCcccCCCeeEEEEEecCHHHHHHHHhCCC-CCCCCCCCEEEEeCCC
Confidence            999999999999999999999999999988 4789999999999984

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens}

Probab=100.00  E-value=3.2e-44  Score=282.56  Aligned_cols=153  Identities=46%  Similarity=0.719  Sum_probs=133.9

Q ss_pred             EEEEEeC-----CeeEEEEeecCCCchhHHhHHHhhhcCc---ccceeeeeecceeEEeeCCCccccccceeccccCCCC
Q psy8249           2 SVSLHTD-----VGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPK   73 (232)
Q Consensus         2 ~v~~~t~-----~G~i~i~L~~~~~p~~~~nf~~l~~~~~---y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~   73 (232)
                      .|.|+|+     +|+|+|+||++.||+||+||++||+.++   |+++.||||+++||+||||++..              
T Consensus        24 ~v~~di~i~~~~~G~I~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~--------------   89 (184)
T 3rdd_A           24 TVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRH--------------   89 (184)
T ss_dssp             EEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCSSTTCBCCEEETTTEEEECCTTTS--------------
T ss_pred             EEEEEEeECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCcCcccCCCEEEEccCCcEEEeCCCCCC--------------
Confidence            3667766     9999999999999999999999998766   99999999999999999995410              


Q ss_pred             cchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEe
Q psy8249          74 TCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFI  153 (232)
Q Consensus        74 ~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~i  153 (232)
                                                         .+.++.++++..+++|.. .++|+.+|+|+||++++++++|||||
T Consensus        90 -----------------------------------~g~gg~si~g~~~~de~~-~l~h~~~G~lsmA~~gp~s~gSQFfI  133 (184)
T 3rdd_A           90 -----------------------------------NGTGGKSIYGEKFEDENF-ILKHTGPGILSMANAGPNTNGSQFFI  133 (184)
T ss_dssp             -----------------------------------SSSCCCBTTBSCBCCCCC-CSCCCSTTEEEECCSSTTCBSSCEEE
T ss_pred             -----------------------------------CCCCCcccCCCcccCccc-ccccCCCcEEEEEeCCCCCcccEEEE
Confidence                                               112233556667777755 68888999999999999999999999


Q ss_pred             eccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecC
Q psy8249         154 TYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLD  205 (232)
Q Consensus       154 tl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld  205 (232)
                      +++++|+||++|+|||+|++|||||++|++++++ +++|..+|+|.+|++|+
T Consensus       134 t~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~-~g~P~~~v~I~~cG~l~  184 (184)
T 3rdd_A          134 CTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSR-NGKTSKKITIADCGQLE  184 (184)
T ss_dssp             ESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TSCCSSCEEEEEEEECC
T ss_pred             EeCCchhhCCCceEEEEEecCHHHHHHHHhcCCC-CCCCcCCeEEEeCeEEC
Confidence            9999999999999999999999999999999865 78999999999999985

>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A

Probab=100.00  E-value=1.2e-44  Score=281.28  Aligned_cols=152  Identities=31%  Similarity=0.524  Sum_probs=132.2

Q ss_pred             CEEEEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhh
Q psy8249           1 MSVSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLA   80 (232)
Q Consensus         1 ~~v~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~   80 (232)
                      ..|.|+|++|+|+|+||++.||+||+||++||+.+||+++.||||+++||+||||++..+.-                  
T Consensus         5 ~~v~~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~~~~------------------   66 (166)
T 1v9t_A            5 PHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQ------------------   66 (166)
T ss_dssp             CEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBEEEEETTTEEEESSBCTTCCB------------------
T ss_pred             eEEEEEeCCccEEEEEcCCCCcHHHHHHHHHhccCCCCCCEEEEEECCcEEEcCCcCcCCCC------------------
Confidence            36899999999999999999999999999999999999999999999999999997643210                  


Q ss_pred             hccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEeccc-CCCcccceEEeeccCCC
Q psy8249          81 LCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANN-GPNTNASQFFITYAAHA  159 (232)
Q Consensus        81 l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~-~~~~~~s~f~itl~~~~  159 (232)
                                                        ..++..+++|..+.+.| .+|+|+||++ +|++++|||||++.+++
T Consensus        67 ----------------------------------~~~g~~~~dE~~~~l~~-~~G~lsmA~~~~p~t~gSQFfI~~~~~~  111 (166)
T 1v9t_A           67 ----------------------------------KKPNPPIKNEADNGLRN-TRGTIAMARTADKDSATSQFFINVADNA  111 (166)
T ss_dssp             ----------------------------------CCCCCCBCCCGGGSCCC-CTTEEEECCCSSTTCBCSCEEEESSCCG
T ss_pred             ----------------------------------CCCCCcccccccccccC-CceEEEEeecCCCCCccceEEEEeCCcc
Confidence                                              00123456676655554 7999999996 69999999999999999


Q ss_pred             CCCCC-----ccEEEEEeeccchhhhcccCCCCC----CCCceeeEEEeeeeecC
Q psy8249         160 HLDLK-----YTIFGKVIDGFETLDNLEKLPVNP----NHKPIFFITYAAHAHLD  205 (232)
Q Consensus       160 ~ld~~-----~tvfG~VveG~dvl~~I~~~~~~~----~~~P~~~i~I~~~~~ld  205 (232)
                      |||++     |+|||+|++|||||++|+++++++    +++|..+|+|.+|.+++
T Consensus       112 ~Ld~~~~~~~~tvFG~Vv~G~dvv~~I~~~~~~~~~~~~~~P~~~v~I~~~~v~~  166 (166)
T 1v9t_A          112 FLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSATVLP  166 (166)
T ss_dssp             GGSCCSSCCCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEESSCCBEEEEEECC
T ss_pred             ccCCccCcCCeeEEEEEecCHHHHHHHHhCCCCCCCccCCCcCCCeEEEEEEEeC
Confidence            99998     999999999999999999999886    47899999999998763

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1

Probab=100.00  E-value=3.8e-45  Score=285.15  Aligned_cols=147  Identities=43%  Similarity=0.678  Sum_probs=112.1

Q ss_pred             eCCeeEEEEeecCCCchhHHhHHHhhh--cCc-ccceeeeeecceeEEeeCC-CccccccceeccccCCCCcchhhhhhc
Q psy8249           7 TDVGDIKIELFCEDCPKTCENFLALCA--SDY-YNGCIFHRNIKGFIVQTGD-PTHTGDIKIELFCEDCPKTCENFLALC   82 (232)
Q Consensus         7 t~~G~i~i~L~~~~~p~~~~nf~~l~~--~~~-y~~~~f~rvi~~f~iq~Gd-~t~~G~i~i~l~~~~~P~~~~~F~~l~   82 (232)
                      |++|+|+|+||++.||+|++||++||+  .++ |+++.||||+++||+|+|| ++..|                      
T Consensus        19 T~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~~g----------------------   76 (172)
T 2c3b_A           19 TKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNG----------------------   76 (172)
T ss_dssp             CEEEEEEEEECTTTSHHHHHHHHHHHHSCTTTSSTTCBCCEEETTTEEEECC----------------------------
T ss_pred             cccccEEEEEcCCCCcHHHHHHHHHhccCCCcccCCCEEEEEeCCCEEEeCCcCCCCC----------------------
Confidence            888999999999999999999999999  778 9999999999999999999 43222                      


Q ss_pred             cCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCCCC
Q psy8249          83 ASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLD  162 (232)
Q Consensus        83 ~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld  162 (232)
                                                  .++.++++..+++|. ..++|+++|+|+||+++|++++|||||++.++||||
T Consensus        77 ----------------------------~gg~si~g~~f~dE~-~~~~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LD  127 (172)
T 2c3b_A           77 ----------------------------TGGRSIYGDKFADEN-FSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLD  127 (172)
T ss_dssp             ---------------------------------------------CHHHHHTCEEEEC---------CEEEECSCCTTCC
T ss_pred             ----------------------------CCCcccCCCcccCcc-cccccCCCeEEEEeeCCCCCcccEEEEECCCCCccC
Confidence                                        122345566777784 477888999999999999999999999999999999


Q ss_pred             CCccEEEEEee--ccchhhhcccCCCCCCC-CceeeEEEeeeeec
Q psy8249         163 LKYTIFGKVID--GFETLDNLEKLPVNPNH-KPIFFITYAAHAHL  204 (232)
Q Consensus       163 ~~~tvfG~Vve--G~dvl~~I~~~~~~~~~-~P~~~i~I~~~~~l  204 (232)
                      ++|+|||+|++  |||||++|+++++++.+ +|..+|+|.+|+.|
T Consensus       128 g~~tvFG~Vv~~~G~dvv~~I~~~~t~~~~~~P~~~v~I~~cG~l  172 (172)
T 2c3b_A          128 GKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL  172 (172)
T ss_dssp             SCCEEEEEECSHHHHHHHHHHHTTCCTTSCCCSSSCCEEEEEEEC
T ss_pred             CCeeEEEEEEecCCHHHHHHHHhCCCCCCCccCCCCeEEEeCeeC
Confidence            99999999999  99999999999998765 99999999999976

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi}

Probab=100.00  E-value=4.5e-44  Score=283.54  Aligned_cols=154  Identities=41%  Similarity=0.651  Sum_probs=134.4

Q ss_pred             EEEE-EeCCeeEEEEeecCCCchhHHhHHHhhh--cCc-ccceeeeeecceeEEeeCCCccccccceeccccCCCCcchh
Q psy8249           2 SVSL-HTDVGDIKIELFCEDCPKTCENFLALCA--SDY-YNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCEN   77 (232)
Q Consensus         2 ~v~~-~t~~G~i~i~L~~~~~p~~~~nf~~l~~--~~~-y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~   77 (232)
                      .+.+ +|++|+|+|+||++.||+||+||++||+  .++ |+++.||||+++||+|+||.+.                   
T Consensus        33 di~i~~t~~G~I~ieL~~~~aP~tv~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~-------------------   93 (193)
T 3k2c_A           33 DVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMVQGGDYTA-------------------   93 (193)
T ss_dssp             EEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHSCTTSSSTTCBEEEEETTTEEEECCTTT-------------------
T ss_pred             EEeECCEEeeEEEEEEcCCCChHHHHHHHHHhccccCCcccCCEEEEEeCCCEEEeCCCCC-------------------
Confidence            3444 3899999999999999999999999999  667 9999999999999999999531                   


Q ss_pred             hhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccC
Q psy8249          78 FLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAA  157 (232)
Q Consensus        78 F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~  157 (232)
                                                    ..+.++.++++..+++|.. .++|+++|+++||+.++++++|||||++++
T Consensus        94 ------------------------------~~g~gg~si~g~~f~dE~~-~l~h~~~G~lsmAn~gp~t~gSQFFIt~~~  142 (193)
T 3k2c_A           94 ------------------------------HNGTGGRSIYGEKFPDENF-ELKHTKEGILSMANCGAHTNGSQFFITLGK  142 (193)
T ss_dssp             ------------------------------SSSSCCCCTTSSCBCCCCC-CSCCCSTTEEEECCSSTTCBCSCEEEESSC
T ss_pred             ------------------------------CCCcCCcccCCCccccccc-ccccCCCcEEEEEeCCCCCCccEEEEECCC
Confidence                                          1112334566777778744 788989999999999999999999999999


Q ss_pred             CCCCCCCccEEEEEeeccchhhhcccCCCCCCCCce--eeEEEeeeeecCC
Q psy8249         158 HAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPI--FFITYAAHAHLDL  206 (232)
Q Consensus       158 ~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~--~~i~I~~~~~ld~  206 (232)
                      +|+||++|+|||+|++|||||++|++++++ +++|.  .+|+|.+|+.|+.
T Consensus       143 ~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~-~g~P~~~~~v~I~~cG~l~~  192 (193)
T 3k2c_A          143 TQWLDEKHVVFGEVVEGMDVVHKIAKYGSE-SGQVKKGYRIEIRDCGVLGS  192 (193)
T ss_dssp             CGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TCCCCTTCCEEEEEEEECC-
T ss_pred             CcccCCCccEEEEEeCCHHHHHHHHhcCCC-CCcCccCccEEEEEceEeCC
Confidence            999999999999999999999999999988 67999  9999999999873

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1

Probab=100.00  E-value=6.1e-44  Score=288.30  Aligned_cols=148  Identities=44%  Similarity=0.717  Sum_probs=132.2

Q ss_pred             eCCeeEEEEeecCCCchhHHhHHHhhhcC--------cccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhh
Q psy8249           7 TDVGDIKIELFCEDCPKTCENFLALCASD--------YYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENF   78 (232)
Q Consensus         7 t~~G~i~i~L~~~~~p~~~~nf~~l~~~~--------~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F   78 (232)
                      |++|+|+|+||++.||+||+||++||+.+        +|+++.||||+++||||+||++.                    
T Consensus        71 t~~G~I~ieL~~d~aP~tv~NF~~L~~~~~g~~g~~~~Y~gt~FHRVi~~FmiQgGD~~~--------------------  130 (229)
T 1z81_A           71 NFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFIN--------------------  130 (229)
T ss_dssp             EEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSSSSBCSSTTEECCEEETTTEEEECCTTT--------------------
T ss_pred             eecccEEEEEcCCCCCHHHHHHHHHhhCCCCCcCCCceECCCEEEEEeCCCEEEcCCCcC--------------------
Confidence            45999999999999999999999999988        69999999999999999999751                    


Q ss_pred             hhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCC
Q psy8249          79 LALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAH  158 (232)
Q Consensus        79 ~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~  158 (232)
                                                   .++.++.++++..+++|.. .++|+++|+|+||+.+|++++|||||++.++
T Consensus       131 -----------------------------g~G~Gg~siyg~~f~dE~~-~l~h~~~G~LsMAn~gpntngSQFFIt~~~~  180 (229)
T 1z81_A          131 -----------------------------HNGSGSLSIYGEKFDDENF-DIKHDKEGLLSMANSGPNTNGCQFFITTKKC  180 (229)
T ss_dssp             -----------------------------SSSCCCCBTTBSCCCCCCC-CSCCCSTTEEEECCSSSSCCCSCEEEESSCC
T ss_pred             -----------------------------CCCCCCCccCCCccccccc-ccccCCCcEEEeccCCCCCcccEEEEECCCC
Confidence                                         0122334566777788864 7889899999999999999999999999999


Q ss_pred             CCCCCCccEEEEEe--eccchhhhcccCCCCCC-CCceeeEEEeeeeec
Q psy8249         159 AHLDLKYTIFGKVI--DGFETLDNLEKLPVNPN-HKPIFFITYAAHAHL  204 (232)
Q Consensus       159 ~~ld~~~tvfG~Vv--eG~dvl~~I~~~~~~~~-~~P~~~i~I~~~~~l  204 (232)
                      |+||++|+|||+|+  +|||||++|++++++++ ++|..+|+|.+|+.|
T Consensus       181 ~~LDg~~tVFG~Vv~~eGmdVv~~I~~~~t~~~~~~P~~~V~I~~cG~l  229 (229)
T 1z81_A          181 EWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL  229 (229)
T ss_dssp             GGGBTTBCEEEEECSHHHHHHHHHHHHSCBCTTTCCBSSCEEEEEEEEC
T ss_pred             cccCCCeeEEEEEEecCcHHHHHHHHhCCCCCCCCCCCCCeEEEeCeeC
Confidence            99999999999999  99999999999999987 999999999999976

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus}

Probab=100.00  E-value=5.2e-44  Score=290.68  Aligned_cols=155  Identities=23%  Similarity=0.423  Sum_probs=129.6

Q ss_pred             CEEEEE-eCCeeEEEEeecCCCchhHHhHHHhhhc-----------------C--c-ccceeeeeecceeEEeeCCC-cc
Q psy8249           1 MSVSLH-TDVGDIKIELFCEDCPKTCENFLALCAS-----------------D--Y-YNGCIFHRNIKGFIVQTGDP-TH   58 (232)
Q Consensus         1 ~~v~~~-t~~G~i~i~L~~~~~p~~~~nf~~l~~~-----------------~--~-y~~~~f~rvi~~f~iq~Gd~-t~   58 (232)
                      |+|.|+ |++|+|+|+||++.||+||+||++||+.                 +  | |+++.||||+++|||||||. +.
T Consensus        19 ~di~i~~t~~G~I~ieL~~d~aP~tv~NF~~L~~g~~~~~~p~~~~~~~~~~G~~~~Y~gt~FHRVi~~FmiQgGd~~~g   98 (234)
T 2ose_A           19 MDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTYEGCKFHNVLHNNYIVSGDIYNS   98 (234)
T ss_dssp             EEEEETTEEEEEEEEEECGGGCHHHHHHHHHHHHTCCCC---------------CCCSTTCBCCEEETTTEEEECCCC--
T ss_pred             EEEEECCcccceEEEEEcCCCCcHHHHHHHHHhcCCccccccccccccccccCCceEECCcEEEEEECCCEEEcCCccCC
Confidence            455665 9999999999999999999999999984                 3  6 88888888888888888883 32


Q ss_pred             ccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCC-----Ccccccccccccc
Q psy8249          59 TGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKK-----FEDEFKETLKHSE  133 (232)
Q Consensus        59 ~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~-----~~~e~~~~l~~~~  133 (232)
                      .|                                                  .++.++++..     ++ +  ..++|++
T Consensus        99 ~G--------------------------------------------------~Gg~siyg~~~~p~~f~-~--~~l~h~~  125 (234)
T 2ose_A           99 NG--------------------------------------------------SSAGTVYCDEPIPPVFG-D--YFYPHES  125 (234)
T ss_dssp             ----------------------------------------------------CCCCCTTTTCCBCCCCC-S--CCCCSCS
T ss_pred             CC--------------------------------------------------CCCccccCCccCccccc-C--cCccCCC
Confidence            22                                                  2223334433     33 2  2578888


Q ss_pred             cceEEecc----cCCCcccceEEeeccC------CCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeee
Q psy8249         134 RGIVSMAN----NGPNTNASQFFITYAA------HAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAH  203 (232)
Q Consensus       134 ~g~v~~~~----~~~~~~~s~f~itl~~------~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~  203 (232)
                      +|+||||+    +++++++|||||++.+      +||||++|+|||+|++|||||++|++++++.+++|..+|+|.+|+.
T Consensus       126 ~G~lsMAn~~~~~gpntngSQFFIt~~~~~~~~g~p~LDg~~tVFG~Vv~GmdVv~~I~~~~t~~~~~P~~~V~I~~~~~  205 (234)
T 2ose_A          126 KGLLSLVPYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSMIKPYAGRKYPTFSIGKCGA  205 (234)
T ss_dssp             TTEEEECCEECTTSCEEBCSCEEEESSCCCTTSSGGGSCTTSEEEEEEEECHHHHHHHHHHTCCCTTCCCCCEEEEEEEE
T ss_pred             CCEEEEecccccCCCCCccceEEEEecCccccCCCcccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCccCCEEEEEEEE
Confidence            99999999    8999999999999999      9999999999999999999999999999998899999999999999


Q ss_pred             cCCCC
Q psy8249         204 LDLKY  208 (232)
Q Consensus       204 ld~~~  208 (232)
                      ++.++
T Consensus       206 l~~p~  210 (234)
T 2ose_A          206 YLDSS  210 (234)
T ss_dssp             CCCHH
T ss_pred             ecCCc
Confidence            98754

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=100.00  E-value=4.9e-40  Score=286.66  Aligned_cols=154  Identities=47%  Similarity=0.740  Sum_probs=136.7

Q ss_pred             EEEEeC-----CeeEEEEeecCCCchhHHhHHHhhhc--------C---cccceeeeeecceeEEeeCCCccccccceec
Q psy8249           3 VSLHTD-----VGDIKIELFCEDCPKTCENFLALCAS--------D---YYNGCIFHRNIKGFIVQTGDPTHTGDIKIEL   66 (232)
Q Consensus         3 v~~~t~-----~G~i~i~L~~~~~p~~~~nf~~l~~~--------~---~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l   66 (232)
                      |.|+|+     .|+|+|+||++.||+||+||++||+.        |   +|+|+.|||||++|||||||++.        
T Consensus        18 v~~~~~~~~~~~G~i~~~l~~~~~P~t~~nf~~l~~~~~~~~~~~g~~~~y~~~~fhrv~~~f~~q~Gd~~~--------   89 (370)
T 1ihg_A           18 VFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSN--------   89 (370)
T ss_dssp             EEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEETTTEEEECCTTT--------
T ss_pred             EEEEEEECCEecccEEEEEcCCCCchHHHHHHHHcCCCcCcCccCCCcceeCCcEeEEEECCcEEECCCCCC--------
Confidence            667776     89999999999999999999999998        5   68999999999999999988751        


Q ss_pred             cccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCc
Q psy8249          67 FCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNT  146 (232)
Q Consensus        67 ~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~  146 (232)
                                                               +++.++.++++..+++|.. .++|+.+|+|+|++.+|++
T Consensus        90 -----------------------------------------~~g~g~~~~~~~~~~~e~~-~~~~~~~g~l~ma~~~~~~  127 (370)
T 1ihg_A           90 -----------------------------------------QNGTGGESIYGEKFEDENF-HYKHDKEGLLSMANAGSNT  127 (370)
T ss_dssp             -----------------------------------------SSSSCCCBTTBSCBCCCCC-CBCCCSTTEEEECCSSTTC
T ss_pred             -----------------------------------------CCCCCCCCCCCCCcCCCcC-CcCCCCCeEEEEeeCCCCC
Confidence                                                     1223445677888888865 7889999999999999999


Q ss_pred             ccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCC
Q psy8249         147 NASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLK  207 (232)
Q Consensus       147 ~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~  207 (232)
                      ++|||||+++++||||++|+|||+|++||+++++|++.+++. ++|..+|+|.+|+.+...
T Consensus       128 ~~sqffi~~~~~~~ld~~~~vfG~v~~g~~v~~~i~~~~~~~-~~P~~~v~I~~~g~l~~~  187 (370)
T 1ihg_A          128 NGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKG-EKPAKLCVIAECGELKEG  187 (370)
T ss_dssp             BCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEET-TEESSCEEEEEEEEECTT
T ss_pred             CCceEEEeCCCCcccCCCceEEEEEecCHHHHHHHHcCCCCC-CccceeEEEEEEEEeccC
Confidence            999999999999999999999999999999999999999886 899999999999998764

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}

Probab=100.00  E-value=1.5e-35  Score=253.52  Aligned_cols=151  Identities=27%  Similarity=0.422  Sum_probs=118.1

Q ss_pred             EEEEeC--------CeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCc
Q psy8249           3 VSLHTD--------VGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKT   74 (232)
Q Consensus         3 v~~~t~--------~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~   74 (232)
                      |.|+|+        .|+|+|+||++.||+||+||++||+.+||+++.|||| ++||+||||++..|..-..      |.+
T Consensus       173 V~m~t~~~~~~~~~~G~I~IeL~~d~AP~Tv~NFl~L~~~GfYdGt~FHRV-~gFmIQgGDp~g~G~G~~~------~~~  245 (369)
T 3rfy_A          173 VDMKVKIKDNPNIEDCVFRIVLDGYNAPVTAGNFVDLVERHFYDGMEIQRS-DGFVVQTGDPEGPAEGFID------PST  245 (369)
T ss_dssp             EEEEEECCSCSSCSEEEEEEEEETTTCHHHHHHHHHHHHTTTTTTEECEEE-EEEEECCCCCCCCCSCCCS------CCC
T ss_pred             EEEEEeccCCCcccceEEEEEEeCCCCcHHHHHHHHHhhcCCcCCCeeeee-CCeeEecCCCCCCCCCccC------ccc
Confidence            566665        9999999999999999999999999999999999999 9999999999866543111      110


Q ss_pred             chhhhhhccCCCCCCceeEEeecC-cEEEcCCCCCCCCCCCccCCCCCcccc----cccccccccceEEeccc--CCCcc
Q psy8249          75 CENFLALCASDYYNGCIFHRNIKG-FIVQTGDPTHTGKGGNSIWGKKFEDEF----KETLKHSERGIVSMANN--GPNTN  147 (232)
Q Consensus        75 ~~~F~~l~~~~~y~g~~~~rv~~~-~~vq~G~~~~~~~~~~~~~~~~~~~e~----~~~l~~~~~g~v~~~~~--~~~~~  147 (232)
                      ..         .       +.+|. +.+        ...+.++|+..+++|.    .+.++|+.+|+++||++  +++++
T Consensus       246 g~---------~-------~~iP~E~~~--------~G~g~piyg~~fedegf~~~~~~L~h~~~G~LsMAns~~gPnSn  301 (369)
T 3rfy_A          246 EK---------T-------RTVPLEIMV--------TGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEFENDSG  301 (369)
T ss_dssp             CC---------C-------CSSSSSSCS--------SSSCCSCCCSSTGGGTEEEEEEEECCCCCCCCCCSSCCCCCCCS
T ss_pred             Cc---------C-------cccCccccc--------cCCCCCcCCCccccccccccccccccCCCceEEEeecCCCCCCc
Confidence            00         0       00000 000        0012356677777663    45788999999999997  89999


Q ss_pred             cceEEeec-------cCCCCCCCCccEEEEEeeccchhhhcccC
Q psy8249         148 ASQFFITY-------AAHAHLDLKYTIFGKVIDGFETLDNLEKL  184 (232)
Q Consensus       148 ~s~f~itl-------~~~~~ld~~~tvfG~VveG~dvl~~I~~~  184 (232)
                      +|||||++       .+.+|||++|+|||+|++|||||++|++.
T Consensus       302 gSQFFItl~d~~L~~~~~~~LDgkytVFG~VveGmdVVdkI~~G  345 (369)
T 3rfy_A          302 SSQVFWLLKESELTPSNSNILDGRYAVFGYVTDNEDFLADLKVG  345 (369)
T ss_dssp             SCCCCCCCEEEEECSCCCSSSCSCEEEEEEEEESTTGGGGCCTT
T ss_pred             cceEEEEecccccCCCCCcccCCCeeEEEEEecCHHHHHHHhCC
Confidence            99999999       46899999999999999999999999884

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}

Probab=99.88  E-value=1.4e-23  Score=167.29  Aligned_cols=139  Identities=32%  Similarity=0.580  Sum_probs=98.5

Q ss_pred             ccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcC-----CCCCCCCCCCccCCCCCcccccccccc
Q psy8249          57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTG-----DPTHTGKGGNSIWGKKFEDEFKETLKH  131 (232)
Q Consensus        57 t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G-----~~~~~~~~~~~~~~~~~~~e~~~~l~~  131 (232)
                      |+.|+++++||++.+|++++||++||+.++|+++.|||++++||+|||     |+..++.++.+++......        
T Consensus        13 T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRvi~~f~iQgG~~~~~Dp~~~g~gg~si~~~~~~~--------   84 (201)
T 3bo7_A           13 TTQGSLNIELHADMAPRACDSFLRLCAVKYFDDTIFHRCIRNFMIQGGRAELRQPSKKKEVQQSPRSISGFP--------   84 (201)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBEEEEETTTEEEECCGGGCCC-------CCSSCCCSST--------
T ss_pred             eCCCCEEEEEcCCCCcHHHHHHHHHHhcCccCCCEEEEeeCCCEEEcCcccccCCCCCCCCCcccccccccc--------
Confidence            789999999999999999999999999999999999999999999999     8887777777665432100        


Q ss_pred             cccceEEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCccc
Q psy8249         132 SERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYTIF  211 (232)
Q Consensus       132 ~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~~f  211 (232)
                        .|.- +    ++    ++      .+.|  .|..-|.|        +|++... ..+...++|+..++++||+.|+||
T Consensus        85 --~g~~-f----~d----E~------~~~l--~h~~~G~l--------smA~~gp-~s~gSQFFIt~~~~~~LDg~~tVF  136 (201)
T 3bo7_A           85 --GGAP-F----ED----EF------DNRL--VHQGIGVL--------SMANDGK-HSNLSEFFITFKSCEHLNNKHTIF  136 (201)
T ss_dssp             --TCCC-B----CC----CC------CTTC--CCCSTTEE--------EECCSST-TCBSSCEEEESSCCGGGTTTSCEE
T ss_pred             --CCCc-c----cC----cc------cCCC--CcCCCcEE--------EEeeCCC-CCcccEEEEECCCCcccCCCceEE
Confidence              0000 0    00    00      0111  12222333        2333332 245667899999999999999999


Q ss_pred             ceeecchhhhhhhccCcCCC
Q psy8249         212 GKVIDGLETLDNLEKLPVNP  231 (232)
Q Consensus       212 g~V~~g~~v~~~i~~~~~~~  231 (232)
                      |+|++|||||++|++++++.
T Consensus       137 G~Vv~Gmdvv~~I~~~~t~~  156 (201)
T 3bo7_A          137 GRVVGGLDVLRQWEKLETDK  156 (201)
T ss_dssp             EEEEECHHHHHHHTTCCBCT
T ss_pred             EEEecCHHHHHHHHhCCcCC
Confidence            99999999999999999875

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A*

Probab=99.88  E-value=1.4e-23  Score=161.82  Aligned_cols=132  Identities=61%  Similarity=1.035  Sum_probs=95.5

Q ss_pred             ccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccce
Q psy8249          57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGI  136 (232)
Q Consensus        57 t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~  136 (232)
                      |+.|+++++|+++.+|++++||++||++++|+++.|||+++++++|||++..   .+.   +.    +   ...    | 
T Consensus         7 T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~fhRvi~~f~iQgGd~~~---~g~---gg----~---si~----g-   68 (161)
T 2ok3_A            7 TDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTG---TGR---GG----N---SIW----G-   68 (161)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEECCTTS---SSS---CC----C---CTT----S-
T ss_pred             eCCccEEEEEcCCCCcHHHHHHHHHhhhcccCCCEEEEEECCCEEecCCCCC---CCC---CC----C---ccc----C-
Confidence            7899999999999999999999999999999999999999999999998651   110   10    0   000    0 


Q ss_pred             EEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCcccceeec
Q psy8249         137 VSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYTIFGKVID  216 (232)
Q Consensus       137 v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~~fg~V~~  216 (232)
                                  .    .+.+...-.-+|..-|.|        ++++... ..+...++|+..++++||+.|++||+|++
T Consensus        69 ------------~----~~~dE~~~~l~h~~~G~l--------sma~~gp-~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~  123 (161)
T 2ok3_A           69 ------------K----KFEDEYSEYLKHNVRGVV--------SMANNGP-NTNGSQFFITYGKQPHLDMKYTVFGKVID  123 (161)
T ss_dssp             ------------S----CBCCCCCTTCCSCSTTEE--------EECCSST-TCBCSCEEEESSCCGGGTTTSCEEEEEEE
T ss_pred             ------------C----ccccccCcCcCcCCCeEE--------EEecCCC-CCcceEEEEEcCCCCccCCCEeEEEEEeC
Confidence                        0    000000000112122333        3333332 24556789999999999999999999999


Q ss_pred             chhhhhhhccCcCCC
Q psy8249         217 GLETLDNLEKLPVNP  231 (232)
Q Consensus       217 g~~v~~~i~~~~~~~  231 (232)
                      |||||++|++++++.
T Consensus       124 G~dvv~~I~~~~~~~  138 (161)
T 2ok3_A          124 GLETLDELEKLPVNE  138 (161)
T ss_dssp             CHHHHHHHHTCCBCT
T ss_pred             CHHHHHHHHhCCccC
Confidence            999999999999875

>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1

Probab=99.88  E-value=1.5e-23  Score=161.32  Aligned_cols=132  Identities=39%  Similarity=0.677  Sum_probs=94.6

Q ss_pred             ccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccce
Q psy8249          57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGI  136 (232)
Q Consensus        57 t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~  136 (232)
                      |+.|+++++||++.+|++++||++||+.++|+++.|||++++||+|||++.     +... +..  ......+       
T Consensus        12 T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~fhRvi~~f~iQgGd~~-----~~g~-gg~--si~g~~~-------   76 (160)
T 2fu0_A           12 TTMGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPS-----GDGT-GGE--SIWGNEF-------   76 (160)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEECCTT-----SSSS-CCC--CTTSSCB-------
T ss_pred             ecCccEEEEEeCCCChHHHHHHHHHhccCccCCCEEEEEECCCEEEeCCcC-----CCCC-CCC--cccCCCc-------
Confidence            789999999999999999999999999999999999999999999999863     1100 100  0000000       


Q ss_pred             EEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCcccceeec
Q psy8249         137 VSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYTIFGKVID  216 (232)
Q Consensus       137 v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~~fg~V~~  216 (232)
                             ++    +++      +.|  +|..-|.|        ++++...+ .+...++|+..++++||+.|++||+|++
T Consensus        77 -------~d----E~~------~~l--~h~~~G~l--------smA~~gp~-s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~  128 (160)
T 2fu0_A           77 -------ED----EFF------DHL--NHSKPFMV--------SMANCGPN-TNGSQFFITTVPCPWLDFKHTVFGKVTQ  128 (160)
T ss_dssp             -------CC----CCB------TTB--CSSSSSEE--------EECCSSTT-CBCSCEEEESSCCGGGTTTSCEEEEEEE
T ss_pred             -------cc----ccc------CCc--ccCCceEE--------EEecCCCC-CcccEEEEECCCCCccCCCcEEEEEEEc
Confidence                   00    110      001  11111333        23333322 4556789999999999999999999999


Q ss_pred             chhhhhhhccCcCCC
Q psy8249         217 GLETLDNLEKLPVNP  231 (232)
Q Consensus       217 g~~v~~~i~~~~~~~  231 (232)
                      |||||++|+++++++
T Consensus       129 G~dvv~~I~~~~t~~  143 (160)
T 2fu0_A          129 GSKIVLDIEKVRTDK  143 (160)
T ss_dssp             CHHHHHHHHTSCBCT
T ss_pred             CHHHHHHHHhCCcCC
Confidence            999999999999874

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A

Probab=99.88  E-value=1.7e-23  Score=161.88  Aligned_cols=132  Identities=37%  Similarity=0.616  Sum_probs=95.5

Q ss_pred             ccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccce
Q psy8249          57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGI  136 (232)
Q Consensus        57 t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~  136 (232)
                      |+.|+++++|+++.+|++++||++||+.++|+++.|||++++|++|||++..   .+.  -+..+..+   .        
T Consensus        18 t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~fhRvi~~f~iQgGd~~~---~g~--gg~si~g~---~--------   81 (166)
T 2x7k_A           18 TSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTG---TGR--GGASIYGK---Q--------   81 (166)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHHHHTTTTTEECCEEETTTEEEECCTTS---SSS--CCCCTTSS---C--------
T ss_pred             eCCCcEEEEEccCCCCHHHHHHHHHHhcCCCCCCEEEEEECCCEEEcCCCCC---CCC--CCCccCCC---c--------
Confidence            6789999999999999999999999999999999999999999999998751   110  00000000   0        


Q ss_pred             EEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCcccceeec
Q psy8249         137 VSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYTIFGKVID  216 (232)
Q Consensus       137 v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~~fg~V~~  216 (232)
                                        +.+..+..-+|..-|.|        ++++... ..+...++|+..++++||+.|++||+|++
T Consensus        82 ------------------~~dE~~~~l~h~~~G~l--------smAn~gp-~s~gSQFfI~~~~~~~Ldg~~tvFG~Vv~  134 (166)
T 2x7k_A           82 ------------------FEDELHPDLKFTGAGIL--------AMANAGP-DTNGSQFFVTLAPTQWLDGKHTIFGRVCQ  134 (166)
T ss_dssp             ------------------BCCCCCTTSCCCSTTEE--------EECBSST-TCBCSCEEEESSCCGGGTTTSCEEEEEEE
T ss_pred             ------------------cccccccccCCCCCeEE--------EEeeCCC-CCccceEEEECCCCCccCCCeeEEEEEEc
Confidence                              00100001112212333        2333332 34566789999999999999999999999


Q ss_pred             chhhhhhhccCcCCC
Q psy8249         217 GLETLDNLEKLPVNP  231 (232)
Q Consensus       217 g~~v~~~i~~~~~~~  231 (232)
                      |||||++|+++++++
T Consensus       135 G~dvv~~I~~~~t~~  149 (166)
T 2x7k_A          135 GIGMVNRVGMVETNS  149 (166)
T ss_dssp             CHHHHHHHTTSCBCT
T ss_pred             CHHHHHHHHcCCcCC
Confidence            999999999999875

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A

Probab=99.88  E-value=1.8e-23  Score=164.31  Aligned_cols=133  Identities=47%  Similarity=0.851  Sum_probs=95.5

Q ss_pred             ccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccce
Q psy8249          57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGI  136 (232)
Q Consensus        57 t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~  136 (232)
                      |+.|+++++||++.+|++++||++||+.++|+++.|||++++||+|||++..   .+.   +..       ...    |.
T Consensus        23 t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~---~g~---gg~-------si~----g~   85 (185)
T 2poe_A           23 TNYGDLKFELFCSQCPKACKNFLALSASGYYKNTIFHKNIKGFIIQGGDPTG---TGK---GGE-------SIY----GR   85 (185)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTEEEEEECTTSEEEEEETTS---SSS---CCC-------BTT----BS
T ss_pred             ecCccEEEEEeCCCCcHHHHHHHHHhccCCCCCCEEEEEECCCEEEcCCCCC---CCC---CCC-------ccC----CC
Confidence            7899999999999999999999999999999999999999999999998641   110   100       000    00


Q ss_pred             EEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCC---CCCCCceeeEEEeeeeecCCCCcccce
Q psy8249         137 VSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPV---NPNHKPIFFITYAAHAHLDLKYTIFGK  213 (232)
Q Consensus       137 v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~---~~~~~P~~~i~I~~~~~ld~~~~~fg~  213 (232)
                                       .+.+.....-+|..-|.|        ++++...   ...+...++|+..++++||+.|++||+
T Consensus        86 -----------------~~~dE~~~~l~h~~~G~l--------smA~~g~~~~p~s~gSQFFIt~~~~~~LDg~~tVFG~  140 (185)
T 2poe_A           86 -----------------YFDDEIYPELKYDRRGIL--------SMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGK  140 (185)
T ss_dssp             -----------------CBCCCCCTTSCCCSTTEE--------EECCSCC-CCCSCBCSCEEEESSCCGGGTTTSCEEEE
T ss_pred             -----------------cccccccCCCccCCCeEE--------EEecCCCCCCCCCccceEEEECCCCCccCCCeeEEEE
Confidence                             000000001112222333        2333321   224556789999999999999999999


Q ss_pred             eecchhhhhhhccCcCCC
Q psy8249         214 VIDGLETLDNLEKLPVNP  231 (232)
Q Consensus       214 V~~g~~v~~~i~~~~~~~  231 (232)
                      |++|||||++|++++++.
T Consensus       141 Vv~Gmdvv~~I~~~~t~~  158 (185)
T 2poe_A          141 LIDGFETLNTLENCPSDK  158 (185)
T ss_dssp             EEECHHHHHHHHHSCBCT
T ss_pred             EeCCHHHHHHHHhCCcCC
Confidence            999999999999999875

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} SCOP: b.62.1.1 PDB: 3o7t_A

Probab=99.87  E-value=1.1e-22  Score=157.43  Aligned_cols=142  Identities=32%  Similarity=0.499  Sum_probs=99.2

Q ss_pred             ceeEEeeCCCccccccceeccccCCCCcchhhhhhcc--CCC-CCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcc
Q psy8249          47 KGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCA--SDY-YNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFED  123 (232)
Q Consensus        47 ~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~--~~~-y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~  123 (232)
                      +.||....+.|+.|+++++||++.+|++++||++||+  .++ |+++.|||+++++++|+|+  .  ....   +     
T Consensus         4 ~vf~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd--~--~~~~---g-----   71 (164)
T 3pmp_A            4 NVFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGD--F--TRHN---G-----   71 (164)
T ss_dssp             CEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBEEEEETTTEEEECC--T--TTSS---S-----
T ss_pred             EEEEEEEECCEEeeEEEEEEeCCCCcHHHHHHHHHhcccCCCcccCCEEEEEECCCeEEeCC--C--CCCC---C-----
Confidence            4577777777999999999999999999999999999  567 9999999999999999985  0  0000   0     


Q ss_pred             cccccccccccceEEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeee
Q psy8249         124 EFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAH  203 (232)
Q Consensus       124 e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~  203 (232)
                                .|-.+.       .+..|    .+. ....+|..-|.|        ++++...+ .+...++|+..++++
T Consensus        72 ----------~gg~si-------~g~~~----~dE-~~~l~h~~~G~l--------sma~~g~~-t~~SQFfIt~~~~~~  120 (164)
T 3pmp_A           72 ----------TGGKSI-------YGEKF----ADE-NFQVKHTKPGLL--------SMANAGAN-TNGSQFFITTVPTSW  120 (164)
T ss_dssp             ----------SCCCBT-------TBSCB----CCC-CCCSCCCSTTEE--------EECBSSTT-CBCSCEEEESSCCGG
T ss_pred             ----------CCCccc-------CCccc----ccc-ccccCcCCCcEE--------EEeeCCCC-CcccEEEEECCCChh
Confidence                      000000       00000    000 011112212333        23333322 445678999999999


Q ss_pred             cCCCCcccceeecchhhhhhhccCcCCC
Q psy8249         204 LDLKYTIFGKVIDGLETLDNLEKLPVNP  231 (232)
Q Consensus       204 ld~~~~~fg~V~~g~~v~~~i~~~~~~~  231 (232)
                      ||+.|++||+|++||||||+|++++++.
T Consensus       121 Ld~~~~vFG~Vv~G~~vv~~I~~~~~~~  148 (164)
T 3pmp_A          121 LDGKHVVFGEVIEGLDIVRKVEGKGSAS  148 (164)
T ss_dssp             GTTTSCEEEEEEECHHHHHHHHTTCCTT
T ss_pred             hCCCccEEEEEeCCHHHHHHHHhCCCCC
Confidence            9999999999999999999999998863

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A

Probab=99.87  E-value=1e-22  Score=159.46  Aligned_cols=142  Identities=33%  Similarity=0.577  Sum_probs=99.2

Q ss_pred             ceeEEeeCCCccccccceeccccCCCCcchhhhhhcc-----------CCCCCCceeEEeecCcEEEcCCCCCCCCCCCc
Q psy8249          47 KGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCA-----------SDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNS  115 (232)
Q Consensus        47 ~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~-----------~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~  115 (232)
                      +.|+....+.++.|+++++||++.+|++++||++||+           .++|+++.|||++++||+|+|+   . ..+. 
T Consensus        11 ~vf~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~~Y~g~~FhRvi~~f~iQgGd---~-~~~~-   85 (179)
T 2wfi_A           11 RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGD---F-SEGN-   85 (179)
T ss_dssp             EEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECC---T-TTSS-
T ss_pred             eEEEEEEECCccceEEEEEEcCCCCChHHHHHHHHhcCCcCcccccccCCeECCCEEEEEECCCEEEccc---c-cCCC-
Confidence            4577777778999999999999999999999999996           4589999999999999999985   1 0000 


Q ss_pred             cCCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceee
Q psy8249         116 IWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFF  195 (232)
Q Consensus       116 ~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~  195 (232)
                        +               .|--+.       .+..    +.+. ....+|..-|.|        ++++...+ .+...++
T Consensus        86 --g---------------~gg~si-------~g~~----f~dE-~~~~~h~~~G~l--------sMAn~gp~-tngSQFf  127 (179)
T 2wfi_A           86 --G---------------RGGESI-------YGGF----FEDE-SFAVKHNKEFLL--------SMANRGKD-TNGSQFF  127 (179)
T ss_dssp             --S---------------SCCCCT-------TSSC----BCCC-CCCSCCCSTTEE--------EECCSSTT-CBCSCEE
T ss_pred             --C---------------CCCCcc-------cCCc----cccc-ccCcCcCCCeEE--------EEEeCCCC-CcceEEE
Confidence              0               000000       0000    0000 001112111222        33343333 4556789


Q ss_pred             EEEeeeeecCCCCcccceeecchhhhhhhccCcCCC
Q psy8249         196 ITYAAHAHLDLKYTIFGKVIDGLETLDNLEKLPVNP  231 (232)
Q Consensus       196 i~I~~~~~ld~~~~~fg~V~~g~~v~~~i~~~~~~~  231 (232)
                      |+..++++||+.|+|||+|++|||||++|+++++++
T Consensus       128 It~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~t~~  163 (179)
T 2wfi_A          128 ITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDA  163 (179)
T ss_dssp             EESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCT
T ss_pred             EEcCCCcccCCCeeEEEEEeCCHHHHHHHHcCCCCC
Confidence            999999999999999999999999999999999875

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1

Probab=99.87  E-value=3.5e-23  Score=163.72  Aligned_cols=132  Identities=39%  Similarity=0.765  Sum_probs=95.6

Q ss_pred             ccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccce
Q psy8249          57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGI  136 (232)
Q Consensus        57 t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~  136 (232)
                      |+.|+|+++||++.+|++++||++||+.++|+++.|||++++||+|||++..   .+.   +..       ...    | 
T Consensus        26 T~~G~I~ieL~~~~aP~tv~NF~~L~~~g~Ydg~~FhRVi~~f~iQgGd~~~---~g~---Gg~-------si~----g-   87 (197)
T 1zkc_A           26 TNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPTG---TGT---GGE-------SYW----G-   87 (197)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEEEEEEETTTEEEECCTTS---SSS---CCC-------BTT----B-
T ss_pred             eCCccEEEEEcCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCCEEEcCCCCC---CCC---CCC-------ccC----C-
Confidence            7899999999999999999999999999999999999999999999998641   110   100       000    0 


Q ss_pred             EEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCcccceeec
Q psy8249         137 VSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYTIFGKVID  216 (232)
Q Consensus       137 v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~~fg~V~~  216 (232)
                                  ..    +.+.....-.|..-|.|        +|++... ..+...++|+..++++||+.|++||+|++
T Consensus        88 ------------~~----f~dE~~~~l~h~~~G~l--------sMAn~gp-~sngSQFFIt~~~~~~LDg~~tVFG~Vv~  142 (197)
T 1zkc_A           88 ------------KP----FKDEFRPNLSHTGRGIL--------SMANSGP-NSNRSQFFITFRSCAYLDKKHTIFGRVVG  142 (197)
T ss_dssp             ------------SC----BCCCCCTTCCSCSTTEE--------EECCSST-TCBCSCEEEESSCCGGGTTTSCEEEEEEE
T ss_pred             ------------Cc----cccccCcCcCCCCceEE--------EEecCCC-CCcccEEEEEcCCCCccCCCccEEEEEEc
Confidence                        00    00000001112222333        2333332 24566799999999999999999999999


Q ss_pred             chhhhhhhccCcCCC
Q psy8249         217 GLETLDNLEKLPVNP  231 (232)
Q Consensus       217 g~~v~~~i~~~~~~~  231 (232)
                      |||||++|++++++.
T Consensus       143 Gmdvv~~I~~~~t~~  157 (197)
T 1zkc_A          143 GFDVLTAMENVESDP  157 (197)
T ss_dssp             CHHHHHHHHHSCBCT
T ss_pred             CHHHHHHHHcCCCCC
Confidence            999999999999875

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A*

Probab=99.87  E-value=1.4e-22  Score=158.40  Aligned_cols=142  Identities=34%  Similarity=0.546  Sum_probs=99.7

Q ss_pred             ceeEEeeCCCccccccceeccccCCCCcchhhhhhccC--------C---CCCCceeEEeecCcEEEcCCCCCCCCCCCc
Q psy8249          47 KGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCAS--------D---YYNGCIFHRNIKGFIVQTGDPTHTGKGGNS  115 (232)
Q Consensus        47 ~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~~--------~---~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~  115 (232)
                      +.|+....+.++.|+++++||++.+|++++||++||++        +   +|+++.|||++++||+|+|+   . ..+. 
T Consensus         8 ~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~~~~g~~~~Y~g~~FhRvi~~f~iQgGd---~-~~~~-   82 (177)
T 1a58_A            8 RVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGD---F-TKGD-   82 (177)
T ss_dssp             EEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCCCTTCBEEEEETTTEEEECC---C-SSSS-
T ss_pred             EEEEEEEECCEeceeEEEEEcCCCCchHHHHHHHHhcCCcCcccccCCcceeCCCEEEEEECCCEEEeCC---c-cCCC-
Confidence            45777766779999999999999999999999999985        3   89999999999999999985   0 0000 


Q ss_pred             cCCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceee
Q psy8249         116 IWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFF  195 (232)
Q Consensus       116 ~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~  195 (232)
                        +               .|--+.       .+..    +.+.. ...+|..-|.|        ++++...+ .+...++
T Consensus        83 --g---------------~gg~si-------~g~~----f~dE~-~~~~h~~~G~l--------smAn~gp~-tngSQFf  124 (177)
T 1a58_A           83 --G---------------TGGESI-------YGGM----FDDEE-FVMKHDEPFVV--------SMANKGPN-TNGSQFF  124 (177)
T ss_dssp             --S---------------SCCCCT-------TSSC----BCCCC-CCSCCCSSSEE--------EECCSSTT-CBCSCEE
T ss_pred             --C---------------CCCCcc-------cCCc----ccCcc-cCcccCCCeEE--------EEeeCCCC-CceeEEE
Confidence              0               000000       0000    00000 01122222333        33443333 4556789


Q ss_pred             EEEeeeeecCCCCcccceeecchhhhhhhccCcCCC
Q psy8249         196 ITYAAHAHLDLKYTIFGKVIDGLETLDNLEKLPVNP  231 (232)
Q Consensus       196 i~I~~~~~ld~~~~~fg~V~~g~~v~~~i~~~~~~~  231 (232)
                      |+..++++||+.|+|||+|++|||||++|++++++.
T Consensus       125 It~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~~~~  160 (177)
T 1a58_A          125 ITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNS  160 (177)
T ss_dssp             EESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCT
T ss_pred             EECCCCCccCCCEEEEEEEEcCHHHHHHHHhCCCCC
Confidence            999999999999999999999999999999999875

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A

Probab=99.87  E-value=5.3e-23  Score=159.71  Aligned_cols=141  Identities=35%  Similarity=0.576  Sum_probs=102.1

Q ss_pred             ceeEEeeCCCccccccceeccccCCCCcchhhhhhc--cCCC-CCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcc
Q psy8249          47 KGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALC--ASDY-YNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFED  123 (232)
Q Consensus        47 ~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~--~~~~-y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~  123 (232)
                      +.|+....+.++.|+++++||++.+|++++||++||  +.++ |+++.|||++++||+|||++..    +.. .+.    
T Consensus        13 ~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~----~~g-~gg----   83 (172)
T 2haq_A           13 KVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTN----FDG-TGG----   83 (172)
T ss_dssp             EEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBCCEEETTTEEEECCTTT----SSS-SCC----
T ss_pred             eEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHhccCCCcccCCCEEEEEECCCEEecCCccC----CCC-CCC----
Confidence            457777777899999999999999999999999999  5678 9999999999999999998541    100 000    


Q ss_pred             cccccccccccceEEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeee
Q psy8249         124 EFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAH  203 (232)
Q Consensus       124 e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~  203 (232)
                      +   ...    |             ..    +.+. ...-+|. -|.|        ++++...+ .+...++|+..++++
T Consensus        84 ~---si~----g-------------~~----f~dE-~~~l~h~-~G~l--------smAn~gp~-tngSQFfIt~~~~~~  128 (172)
T 2haq_A           84 K---SIY----G-------------EK----FADE-NLNVKHF-VGAL--------SMANAGPN-TNGSQFFITTAPTPW  128 (172)
T ss_dssp             C---CSS----S-------------SC----BCCC-CCCSCCC-TTEE--------EECCSSTT-CBCSCEEEESSCCGG
T ss_pred             c---ccc----C-------------Cc----ccCc-CCCcccC-ceEE--------EEccCCCC-CcccEEEEECCCCCc
Confidence            0   000    0             00    0000 0111222 3444        33343322 455778999999999


Q ss_pred             cCCCCcccceeecchhhhhhhccCcCCC
Q psy8249         204 LDLKYTIFGKVIDGLETLDNLEKLPVNP  231 (232)
Q Consensus       204 ld~~~~~fg~V~~g~~v~~~i~~~~~~~  231 (232)
                      ||+.|++||+|++|||||++|+++++++
T Consensus       129 LDg~~~vFG~Vv~G~dvv~~I~~~~t~~  156 (172)
T 2haq_A          129 LDGRHVVFGKVLDGMDVVLRIEKTKTNS  156 (172)
T ss_dssp             GTTTSCEEEEEEECHHHHHHHHTSCBCG
T ss_pred             cCCCEeEEEEEeCCHHHHHHHHhCCcCC
Confidence            9999999999999999999999999864

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A

Probab=99.87  E-value=8.9e-23  Score=159.48  Aligned_cols=142  Identities=35%  Similarity=0.630  Sum_probs=99.4

Q ss_pred             ceeEEeeCCCccccccceeccccCCCCcchhhhhhccCCC--------CCCceeEEeecCcEEEcCCCCCCCCCCCccCC
Q psy8249          47 KGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY--------YNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWG  118 (232)
Q Consensus        47 ~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~--------y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~  118 (232)
                      +.|+....+.++.|+++++||++.+|++++||++||++++        |+++.|||++++|++|||+   . ..+.   +
T Consensus        12 ~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~g~~~~Y~g~~FhRvi~~f~iQgGd---~-~~~~---G   84 (177)
T 1mzw_A           12 VVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGD---F-VNGD---G   84 (177)
T ss_dssp             EEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCEETTEECSSTTCBCCEEETTTEEEECC---T-TTSS---S
T ss_pred             EEEEEEEECCeeceeEEEEEcCCCCcHHHHHHHHHHhcccCCcCccceECCCEEEEEECCCEEEcCC---c-ccCC---C
Confidence            3466666667899999999999999999999999999988        9999999999999999985   1 0000   0


Q ss_pred             CCCcccccccccccccceEEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEE
Q psy8249         119 KKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITY  198 (232)
Q Consensus       119 ~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I  198 (232)
                                     .|-.+.       .+..|    .+. ....+|..-|.|        ++++...+ .+...++|+.
T Consensus        85 ---------------~gg~si-------~g~~f----~dE-~~~l~h~~~G~l--------smAn~gp~-tngSQFfIt~  128 (177)
T 1mzw_A           85 ---------------TGVASI-------YRGPF----ADE-NFKLRHSAPGLL--------SMANSGPS-TNGCQFFITC  128 (177)
T ss_dssp             ---------------CCCCCT-------TSSCB----CCC-CCCSCCCSTTEE--------EECCSSTT-CBCSCEEEES
T ss_pred             ---------------CCCCcc-------CCCcc----cCc-ccccccCCCCEE--------EEccCCCC-CcceEEEEEC
Confidence                           000000       00000    000 001112222333        23333323 4556789999


Q ss_pred             eeeeecCCCCcccceeecchhhhhhhccCcCCC
Q psy8249         199 AAHAHLDLKYTIFGKVIDGLETLDNLEKLPVNP  231 (232)
Q Consensus       199 ~~~~~ld~~~~~fg~V~~g~~v~~~i~~~~~~~  231 (232)
                      .++++||+.|++||+|++|||||++|+++++++
T Consensus       129 ~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~t~~  161 (177)
T 1mzw_A          129 SKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGP  161 (177)
T ss_dssp             SCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCG
T ss_pred             CCCCccCCCeeEEEEEeCCHHHHHHHHhCCcCC
Confidence            999999999999999999999999999999864

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1

Probab=99.87  E-value=6.3e-23  Score=161.76  Aligned_cols=129  Identities=36%  Similarity=0.633  Sum_probs=94.4

Q ss_pred             ccccccceeccccCCCCcchhhhhhc---------------cCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCC
Q psy8249          57 THTGDIKIELFCEDCPKTCENFLALC---------------ASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKF  121 (232)
Q Consensus        57 t~~G~i~i~l~~~~~P~~~~~F~~l~---------------~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~  121 (232)
                      |+.|+|+++||++.+|++++||++||               +.++|+++.|||++++||+|||++..+        +..-
T Consensus        30 t~~G~I~ieL~~~~aP~tv~NF~~L~tG~~~~~~~~~g~~~~~~~Y~g~~FhRVi~~fmiQgGd~~g~--------G~gg  101 (191)
T 1w74_A           30 TNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPTGT--------GRGG  101 (191)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCSSTTEEEEEEETTTEEEECCTTSS--------SSCC
T ss_pred             ecceeEEEEEcCCCChHHHHHHHHHhcCCcccccccccccccCCccCCCEEEEEeCCCEEecCCCCCC--------CCCC
Confidence            77899999999999999999999999               347999999999999999999996421        1100


Q ss_pred             cccccccccccccceEEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeee
Q psy8249         122 EDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAH  201 (232)
Q Consensus       122 ~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~  201 (232)
                                  .|        .         .+.+.....-+|..-|.|        +|++... ..+...++|+...+
T Consensus       102 ------------~g--------~---------~f~dE~~~~l~h~~~G~l--------sMAn~gp-ntngSQFFIt~~~~  143 (191)
T 1w74_A          102 ------------PG--------Y---------KFADEFHPELQFDKPYLL--------AMANAGP-GTNGSQFFITVGKT  143 (191)
T ss_dssp             ------------SS--------C---------CBCCCCCTTCCSCSSSEE--------EECCSST-TCBSSCEEEESSCC
T ss_pred             ------------CC--------C---------ccccccccCCCcCCCcEE--------EEeeCCC-CCccceEEEEcCCC
Confidence                        00        0         000110011112222333        3344332 34556789999999


Q ss_pred             eecCCCCcccceeec--chhhhhhhccCcCCC
Q psy8249         202 AHLDLKYTIFGKVID--GLETLDNLEKLPVNP  231 (232)
Q Consensus       202 ~~ld~~~~~fg~V~~--g~~v~~~i~~~~~~~  231 (232)
                      ++||+.|+|||+|++  |||||++|++++++.
T Consensus       144 ~~LDg~~tVFG~Vv~~~Gmdvv~~I~~~~t~~  175 (191)
T 1w74_A          144 PHLNRRHTIFGEVIDAESQRVVEAISKTATDG  175 (191)
T ss_dssp             GGGTTTSCEEEEECSHHHHHHHHHHHTSCBCT
T ss_pred             cccCCCeeEEEEEEECCCHHHHHHHHcCCcCC
Confidence            999999999999999  999999999999874

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1

Probab=99.87  E-value=6.1e-23  Score=162.34  Aligned_cols=132  Identities=36%  Similarity=0.647  Sum_probs=95.4

Q ss_pred             ccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccce
Q psy8249          57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGI  136 (232)
Q Consensus        57 t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~  136 (232)
                      |+.|+++++|+++.+|++++||++||+.++|+++.|||++++||+|||++..   .+.   +..       ...    | 
T Consensus        45 T~~G~I~ieL~~~~aP~tv~NF~~L~~~g~Y~g~~FhRVi~~f~iQgGd~~~---~g~---gg~-------si~----g-  106 (196)
T 2b71_A           45 TNLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQGGDPTG---TGK---GGK-------SIY----G-  106 (196)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEEEEEEETTTEEEEEETTS---SSS---CCC-------BTT----B-
T ss_pred             eCCCCEEEEEeCCCCcHHHHHHHHHhhcCCcCCCEEEEEeCCcEEEcCCCCC---CCC---CCC-------ccC----C-
Confidence            7899999999999999999999999999999999999999999999998751   110   100       000    0 


Q ss_pred             EEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCcccceeec
Q psy8249         137 VSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYTIFGKVID  216 (232)
Q Consensus       137 v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~~fg~V~~  216 (232)
                                  ..    +.+.....-+|..-|.|        +|++...+ .+...++|+..++++||+.|++||+|++
T Consensus       107 ------------~~----~~dE~~~~l~h~~~G~l--------sMAn~gpn-s~gSQFFIt~~~~~~LDg~~tVFG~Vv~  161 (196)
T 2b71_A          107 ------------EY----FEDEINKELKHTGAGIL--------SMSNNGPN-TNSSQFFITLAPLPHLDGKHTIFARVSK  161 (196)
T ss_dssp             ------------SC----BCCCCCTTCCCCSTTEE--------EECCSSTT-CBSSCEEEESSCCGGGTTTSCEEEEEEE
T ss_pred             ------------Cc----ccccccCCcCcCCCeEE--------EEccCCCC-CcccEEEEECCCCCccCCCEeEEEEEec
Confidence                        00    00000001112222333        23333322 4556789999999999999999999999


Q ss_pred             chhhhhhhccCcCCC
Q psy8249         217 GLETLDNLEKLPVNP  231 (232)
Q Consensus       217 g~~v~~~i~~~~~~~  231 (232)
                      |||||++|++++++.
T Consensus       162 Gmdvv~~I~~~~t~~  176 (196)
T 2b71_A          162 NMTCIENIASVQTTA  176 (196)
T ss_dssp             CHHHHHHHHTSCBCT
T ss_pred             CHHHHHHHHhCCcCC
Confidence            999999999999875

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens}

Probab=99.87  E-value=2.2e-22  Score=158.89  Aligned_cols=144  Identities=32%  Similarity=0.540  Sum_probs=100.4

Q ss_pred             ecceeEEeeCCCccccccceeccccCCCCcchhhhhhcc-----------CCCCCCceeEEeecCcEEEcCCCCCCCCCC
Q psy8249          45 NIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCA-----------SDYYNGCIFHRNIKGFIVQTGDPTHTGKGG  113 (232)
Q Consensus        45 vi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~-----------~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~  113 (232)
                      ..+.|+....+.++.|+++++||++.+|++++||++||+           .++|+++.|||++++||+|+||   . ..+
T Consensus        19 ~~~vf~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~k~~~Y~g~~FhRVi~~fmiQgGd---~-~~~   94 (192)
T 2he9_A           19 SPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGD---F-SEG   94 (192)
T ss_dssp             CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECC---T-TTS
T ss_pred             CCeEEEEEEECCEecceEEEEEcCCCCchHHHHHHHHhcCCCCcccccccCCeECCCEEEEEECCCEEEcCc---c-cCC
Confidence            345677777778999999999999999999999999996           4589999999999999999985   1 000


Q ss_pred             CccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCce
Q psy8249         114 NSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPI  193 (232)
Q Consensus       114 ~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~  193 (232)
                      .   +               .|-.+.       .+..    +.+.. ...+|..-|.|        ++++...+ .+...
T Consensus        95 ~---G---------------~gg~si-------yg~~----f~dE~-~~l~h~~~G~l--------sMAn~gp~-tngSQ  135 (192)
T 2he9_A           95 N---G---------------KGGESI-------YGGY----FKDEN-FILKHDRAFLL--------SMANRGKH-TNGSQ  135 (192)
T ss_dssp             S---S---------------SCCCCT-------TSSC----BCCCC-CCSCCCSTTEE--------EECCSSTT-CBCSC
T ss_pred             C---C---------------CCCCcc-------cCCc----ccCcc-ccCCCCCCeEE--------EEEeCCCC-CcceE
Confidence            0   0               000000       0000    00000 01111111222        33443333 45567


Q ss_pred             eeEEEeeeeecCCCCcccceeecchhhhhhhccCcCCC
Q psy8249         194 FFITYAAHAHLDLKYTIFGKVIDGLETLDNLEKLPVNP  231 (232)
Q Consensus       194 ~~i~I~~~~~ld~~~~~fg~V~~g~~v~~~i~~~~~~~  231 (232)
                      ++|+...+++||+.|++||+|++|||||++|+++++++
T Consensus       136 FFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~  173 (192)
T 2he9_A          136 FFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDA  173 (192)
T ss_dssp             EEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCT
T ss_pred             EEEEcCCCcccCCCccEEEEEEeCHHHHHHHHcCCcCC
Confidence            89999999999999999999999999999999999875

>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1

Probab=99.87  E-value=5.7e-23  Score=160.21  Aligned_cols=131  Identities=38%  Similarity=0.659  Sum_probs=94.2

Q ss_pred             ccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccce
Q psy8249          57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGI  136 (232)
Q Consensus        57 t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~  136 (232)
                      |+.|+++++||++.+|++++||++||+.++|+++.|||++++||+|||++.     +... +..       ...    | 
T Consensus        28 t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~-----~~g~-gg~-------si~----g-   89 (176)
T 2a2n_A           28 TSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPT-----GTGM-GGE-------SIW----G-   89 (176)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEECCTT-----SSSS-CCC-------CTT----S-
T ss_pred             ecCccEEEEEeCCCChHHHHHHHHHhhcCccCCCEEEEEECCcEEEccCCC-----CCCC-CCC-------ccc----C-
Confidence            789999999999999999999999999999999999999999999999863     1100 100       000    0 


Q ss_pred             EEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCcccceeec
Q psy8249         137 VSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYTIFGKVID  216 (232)
Q Consensus       137 v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~~fg~V~~  216 (232)
                             . ....+++      +.|  +|.--|.|        ++++... ..+...++|+..++++||+.|++||+|++
T Consensus        90 -------~-~~~dE~~------~~l--~h~~~G~l--------smA~~gp-~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~  144 (176)
T 2a2n_A           90 -------G-EFEDEFH------STL--RHDRPYTL--------SMANAGS-NTNGSQFFITVVPTPWLDNKHTVFGRVTK  144 (176)
T ss_dssp             -------S-CBCCCCC------TTC--CSCSSSEE--------EECCSST-TCBCSCEEEESSCCGGGTTTSCEEEEEEE
T ss_pred             -------C-ccccccc------ccc--ccCCceEE--------EEEeCCC-CCcccEEEEECCCCCccCCCeeEEEEEeC
Confidence                   0 0000110      001  11111333        2333332 24556789999999999999999999999


Q ss_pred             chhhhhhhccCcCC
Q psy8249         217 GLETLDNLEKLPVN  230 (232)
Q Consensus       217 g~~v~~~i~~~~~~  230 (232)
                      |||||++|++++++
T Consensus       145 Gmdvv~~I~~~~t~  158 (176)
T 2a2n_A          145 GMEVVQRISNVKVN  158 (176)
T ss_dssp             CHHHHHHHHTSCBC
T ss_pred             CHHHHHHHHcCCcc
Confidence            99999999999987

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens}

Probab=99.87  E-value=5.5e-23  Score=163.18  Aligned_cols=132  Identities=37%  Similarity=0.616  Sum_probs=95.0

Q ss_pred             ccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccce
Q psy8249          57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGI  136 (232)
Q Consensus        57 t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~  136 (232)
                      |+.|+|+++||++.+|++++||++||+.++|+++.|||++++|++|+|++..   .+.  -+..+..+   .        
T Consensus        18 T~~G~I~ieL~~d~aP~tv~NF~~L~~~g~Ydg~~FhRVi~~F~iQgGd~~~---~g~--gg~si~g~---~--------   81 (203)
T 2k7n_A           18 TSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTG---TGR--GGASIYGK---Q--------   81 (203)
T ss_dssp             ESSCEEEEEECTTTCTTHHHHHHHHHHHTCGGGCEEEEEETTTEEEEECSSS---SSS--CCCTTSCS---C--------
T ss_pred             eCCCcEEEEEccCCCcHHHHHHHHHHhcCccCCCEEEEEeCCcEEEcCCCCC---CCC--CCCccCCC---c--------
Confidence            6789999999999999999999999999999999999999999999998751   110  00000000   0        


Q ss_pred             EEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCcccceeec
Q psy8249         137 VSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYTIFGKVID  216 (232)
Q Consensus       137 v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~~fg~V~~  216 (232)
                                        +.+.....-+|..-|.|        ++++... ..+...++|+..++++||+.|+|||+|++
T Consensus        82 ------------------f~dE~~~~l~h~~~G~l--------sMAn~gp-nsngSQFFIt~~~~~~LDg~~tVFG~Vve  134 (203)
T 2k7n_A           82 ------------------FEDELHPDLKFTGAGIL--------AMANAGP-DTNGSQFFVTLAPTQWLDGKHTIFGRVCQ  134 (203)
T ss_dssp             ------------------BCCCCCCSSCCCSSCEE--------EEEESST-TCEEEEEEEESSCCCSSTTTSCEEEEEES
T ss_pred             ------------------ccccccccccCCCCeEE--------EEeeCCC-CCcccEEEEEcCCCCccCCCeeEEEEEEc
Confidence                              00000001112222333        2333322 24557789999999999999999999999


Q ss_pred             chhhhhhhccCcCCC
Q psy8249         217 GLETLDNLEKLPVNP  231 (232)
Q Consensus       217 g~~v~~~i~~~~~~~  231 (232)
                      |||||++|+++++++
T Consensus       135 Gmdvv~kI~~~~t~~  149 (203)
T 2k7n_A          135 GIGMVNRVGMVETNS  149 (203)
T ss_dssp             CHHHHHHHHSCCEEE
T ss_pred             CHHHHHHHHcCCcCC
Confidence            999999999998864

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi}

Probab=99.86  E-value=2.9e-22  Score=158.43  Aligned_cols=143  Identities=29%  Similarity=0.485  Sum_probs=98.8

Q ss_pred             cceeEEeeCCCccccccceeccccCCCCcchhhhhhcc--CCC-CCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCc
Q psy8249          46 IKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCA--SDY-YNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFE  122 (232)
Q Consensus        46 i~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~--~~~-y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~  122 (232)
                      .+.|+....+.++.|+|+++||++.+|++++||++||+  .++ |+++.|||++++|++|+|+  .  ......-+..+.
T Consensus        28 p~v~~di~i~~t~~G~I~ieL~~~~aP~tv~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd--~--~~~~g~gg~si~  103 (193)
T 3k2c_A           28 GNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMVQGGD--Y--TAHNGTGGRSIY  103 (193)
T ss_dssp             TCEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHSCTTSSSTTCBEEEEETTTEEEECC--T--TTSSSSCCCCTT
T ss_pred             CEEEEEEeECCEEeeEEEEEEcCCCChHHHHHHHHHhccccCCcccCCEEEEEeCCCEEEeCC--C--CCCCCcCCcccC
Confidence            34567766677999999999999999999999999998  456 9999999999999999984  1  110000000000


Q ss_pred             ccccccccccccceEEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeee
Q psy8249         123 DEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHA  202 (232)
Q Consensus       123 ~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~  202 (232)
                      .+                         .    +.+. ....++..-|.|        ++++...+ .+...++|+..+++
T Consensus       104 g~-------------------------~----f~dE-~~~l~h~~~G~l--------smAn~gp~-t~gSQFFIt~~~~~  144 (193)
T 3k2c_A          104 GE-------------------------K----FPDE-NFELKHTKEGIL--------SMANCGAH-TNGSQFFITLGKTQ  144 (193)
T ss_dssp             SS-------------------------C----BCCC-CCCSCCCSTTEE--------EECCSSTT-CBCSCEEEESSCCG
T ss_pred             CC-------------------------c----cccc-ccccccCCCcEE--------EEEeCCCC-CCccEEEEECCCCc
Confidence            00                         0    0000 001112112333        23333322 44567899999999


Q ss_pred             ecCCCCcccceeecchhhhhhhccCcCCC
Q psy8249         203 HLDLKYTIFGKVIDGLETLDNLEKLPVNP  231 (232)
Q Consensus       203 ~ld~~~~~fg~V~~g~~v~~~i~~~~~~~  231 (232)
                      +||+.|+|||+|++|||||++|+++++++
T Consensus       145 ~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~  173 (193)
T 3k2c_A          145 WLDEKHVVFGEVVEGMDVVHKIAKYGSES  173 (193)
T ss_dssp             GGTTTSCEEEEEEECHHHHHHHHTTCCTT
T ss_pred             ccCCCccEEEEEeCCHHHHHHHHhcCCCC
Confidence            99999999999999999999999998864

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A

Probab=99.86  E-value=3.3e-22  Score=155.45  Aligned_cols=142  Identities=30%  Similarity=0.525  Sum_probs=99.2

Q ss_pred             ceeEEeeCCCccccccceeccccCCCCcchhhhhhccC--CC-CCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcc
Q psy8249          47 KGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCAS--DY-YNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFED  123 (232)
Q Consensus        47 ~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~~--~~-y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~  123 (232)
                      +.|+....+.|+.|+++++||++.+|++++||++||++  ++ |+++.|||++++|++|+|++    ..+.   +     
T Consensus        12 ~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~----~~~~---G-----   79 (172)
T 2cmt_A           12 RVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQGGDF----VKGD---G-----   79 (172)
T ss_dssp             EEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBEEEEETTTEEEECCT----TTSS---S-----
T ss_pred             EEEEEEEECCeecceEEEEEcCCCCCHHHHHHHHHhccCCCceECCCEEEEEECCCEEEcCCc----cCCC---C-----
Confidence            34666666679999999999999999999999999985  67 99999999999999999874    0000   0     


Q ss_pred             cccccccccccceEEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeee
Q psy8249         124 EFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAH  203 (232)
Q Consensus       124 e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~  203 (232)
                                .|-.+.       .+..    +.+.. ...+|..-|.|        ++++...+ .+...++|+..++++
T Consensus        80 ----------~gg~si-------~g~~----f~dE~-~~l~h~~~G~l--------smA~~gp~-t~gSQFfIt~~~~~~  128 (172)
T 2cmt_A           80 ----------TGGKSI-------YGRK----FDDEN-FQLRHEGFGVL--------SMANSGPN-TNGSQFFICTTKCDW  128 (172)
T ss_dssp             ----------SCCCBT-------TBSC----BCCCC-CCSCCCSTTEE--------EECCSSTT-CBCSCEEEESSCCGG
T ss_pred             ----------CCCCcc-------CCCc----ccccc-cCcccCCceEE--------EEeeCCCC-CcccEEEEECCCCCc
Confidence                      000000       0000    00100 01112212333        33343323 455678999999999


Q ss_pred             cCCCCcccceeecchhhhhhhccCcCCC
Q psy8249         204 LDLKYTIFGKVIDGLETLDNLEKLPVNP  231 (232)
Q Consensus       204 ld~~~~~fg~V~~g~~v~~~i~~~~~~~  231 (232)
                      ||+.|++||+|++|||||++|++++++.
T Consensus       129 LDg~~tvFG~Vv~G~dvv~~I~~~~~~~  156 (172)
T 2cmt_A          129 LDGKHVVFGRVVDGQNVVKKMESVGSKS  156 (172)
T ss_dssp             GTTTSCEEEEEEECHHHHHHGGGGCCTT
T ss_pred             cCCCeeEEEEEEcCHHHHHHHHhCCCCC
Confidence            9999999999999999999999988753

>4fru_A Cyclophilin B, peptidyl-prolyl CIS-trans isomerase; cyclophilin-type ppiase, peptidyl-prolyl CIS-trans isomerase chaperone, foldase; HET: ME2 PEG; 1.10A {Equus caballus} PDB: 4frv_A* 3ich_A 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=99.86  E-value=2.5e-22  Score=158.21  Aligned_cols=142  Identities=32%  Similarity=0.473  Sum_probs=98.3

Q ss_pred             ceeEEeeCCCccccccceeccccCCCCcchhhhhhccC--C-CCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcc
Q psy8249          47 KGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCAS--D-YYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFED  123 (232)
Q Consensus        47 ~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~~--~-~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~  123 (232)
                      +.|+....+.++.|+++++||++.+|++++||++||++  + +|+++.|||+++++++|||+   . ..+.         
T Consensus        14 ~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd---~-~~~~---------   80 (185)
T 4fru_A           14 KVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGD---F-TRGD---------   80 (185)
T ss_dssp             EEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCCSTTCBCCEEETTTEEEECC---T-TTSS---------
T ss_pred             EEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHHhcCCCCeEcCCEEEEeeCCCeEEECC---C-CCCC---------
Confidence            34666666678999999999999999999999999987  4 79999999999999999985   0 0000         


Q ss_pred             cccccccccccceEEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeee
Q psy8249         124 EFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAH  203 (232)
Q Consensus       124 e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~  203 (232)
                               ..|-.+.-       +..|    .+. ....+|..-|.|        ++++...+ .+...++|+...+++
T Consensus        81 ---------g~gg~si~-------g~~f----~de-~~~~~h~~~G~l--------sma~~gp~-t~~SQFfI~~~~~~~  130 (185)
T 4fru_A           81 ---------GTGGKSIY-------GERF----PDE-NFKLKHYGPGWV--------SMANAGKD-TNGSQFFITTVKTAW  130 (185)
T ss_dssp             ---------SSCCCBTT-------BSCB----CCC-CCCSCCCSTTEE--------EECCSSTT-CBCSCEEEESSCCGG
T ss_pred             ---------CCCCcccc-------CCcc----Ccc-ccccCcCCCeEE--------EEeeCCCC-CcceEEEEEeCCCcc
Confidence                     00000000       0000    000 001112112333        23333322 445678999999999


Q ss_pred             cCCCCcccceeecchhhhhhhccCcCCC
Q psy8249         204 LDLKYTIFGKVIDGLETLDNLEKLPVNP  231 (232)
Q Consensus       204 ld~~~~~fg~V~~g~~v~~~i~~~~~~~  231 (232)
                      ||+.|++||+|++|||||++|++++++.
T Consensus       131 Ld~~~~vFG~Vv~G~dvv~~I~~~~t~~  158 (185)
T 4fru_A          131 LDGKHVVFGKVLEGMEVVRKVETTKTDG  158 (185)
T ss_dssp             GTTTSCEEEEEEECHHHHHHHHTSCBCT
T ss_pred             cCCCccEEEEEeCCHHHHHHHHhCCCCC
Confidence            9999999999999999999999999874

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...

Probab=99.86  E-value=3.7e-22  Score=154.33  Aligned_cols=141  Identities=29%  Similarity=0.504  Sum_probs=98.9

Q ss_pred             ceeEEeeCCCccccccceeccccCCCCcchhhhhhcc--CCC-CCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcc
Q psy8249          47 KGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCA--SDY-YNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFED  123 (232)
Q Consensus        47 ~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~--~~~-y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~  123 (232)
                      +.|+....+.++.|+++++||++.+|++++||++||+  .++ |+++.|||++++|++|+|++    ..+.. .+.    
T Consensus         5 ~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~----~~~~g-~gg----   75 (165)
T 2z6w_A            5 LVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDF----TNHNG-TGG----   75 (165)
T ss_dssp             EEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCT----TTSSS-SCC----
T ss_pred             EEEEEEEECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCCCccCcCCEEEEEECCCEEEeCCc----cCCCC-CCC----
Confidence            3466666677899999999999999999999999999  788 99999999999999999874    10000 000    


Q ss_pred             cccccccccccceEEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeee
Q psy8249         124 EFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAH  203 (232)
Q Consensus       124 e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~  203 (232)
                      +   ...    |             ..    +.+. ...-+|.--|.|        ++++... ..+...++|+..++++
T Consensus        76 ~---si~----g-------------~~----f~dE-~~~l~h~~~G~l--------smA~~gp-~s~~SQFfI~~~~~~~  121 (165)
T 2z6w_A           76 K---SIY----G-------------SR----FPDE-NFTLKHVGPGVL--------SMANAGP-NTNGSQFFICTIKTDW  121 (165)
T ss_dssp             C---BTT----B-------------SC----BCCC-CCCSCCCSTTEE--------EECCSST-TCBCSCEEEESSCCGG
T ss_pred             C---ccc----C-------------Cc----ccCc-ccccccCCCCEE--------EEeeCCC-CCcccEEEEEcCCCcc
Confidence            0   000    0             00    0010 000111111333        3344332 3455678999999999


Q ss_pred             cCCCCcccceeecchhhhhhhccCcCC
Q psy8249         204 LDLKYTIFGKVIDGLETLDNLEKLPVN  230 (232)
Q Consensus       204 ld~~~~~fg~V~~g~~v~~~i~~~~~~  230 (232)
                      ||+.|++||+|++|||||++|+++++.
T Consensus       122 Ldg~~~vFG~Vv~G~dvv~~I~~~~~~  148 (165)
T 2z6w_A          122 LDGKHVVFGHVIEGMDVVKKIESFGSK  148 (165)
T ss_dssp             GTTTSCEEEEEEECHHHHHHHHHTCCT
T ss_pred             cCCCeeEEEEEEcCHHHHHHHHhCCCC
Confidence            999999999999999999999988763

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} SCOP: b.62.1.1 PDB: 3t1u_A*

Probab=99.86  E-value=6.4e-23  Score=159.22  Aligned_cols=130  Identities=30%  Similarity=0.475  Sum_probs=94.1

Q ss_pred             ccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccce
Q psy8249          57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGI  136 (232)
Q Consensus        57 t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~  136 (232)
                      |+.|+++++||++.+|++++||++||+.++|+++.|||++++||+|||++..         +..   +     ..  .+ 
T Consensus        10 T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~---------~~~---~-----~~--~~-   69 (167)
T 3s6m_A           10 TNHGVIKLELDEAKAPKTVENFLNYVKKGHYDGTIFHRVINGFMIQGGGFEP---------GLK---Q-----KP--TD-   69 (167)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHHHHTTTTTEECCEEETTTEEEESSEET---------TTE---E-----CC--CC-
T ss_pred             eCCceEEEEEeCCCCcHHHHHHHHHhhhcccCCCEeEEecCCcEEEeccccC---------CCC---C-----CC--CC-
Confidence            7899999999999999999999999999999999999999999999998641         100   0     00  00 


Q ss_pred             EEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCC--------C
Q psy8249         137 VSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLK--------Y  208 (232)
Q Consensus       137 v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~--------~  208 (232)
                          ..-++    ++.   ....|      .-|.|        ++++..-...+...++|+..++++||..        |
T Consensus        70 ----~~~~~----E~~---~~l~~------~~G~l--------smA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~~~~  124 (167)
T 3s6m_A           70 ----APIAN----EAN---NGLKN------DTYTI--------AMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWGY  124 (167)
T ss_dssp             ----CCBCC----CGG---GCCCC------CTTEE--------EECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTCCC
T ss_pred             ----CccCC----ccc---ccccC------CccEE--------EEecCCCCCCccceEEEEcCCchhcCCcccccCCCCc
Confidence                00000    000   00011      11333        2333222234556789999999999998        9


Q ss_pred             cccceeecchhhhhhhccCcCCC
Q psy8249         209 TIFGKVIDGLETLDNLEKLPVNP  231 (232)
Q Consensus       209 ~~fg~V~~g~~v~~~i~~~~~~~  231 (232)
                      ++||+|++|||||++|+++++++
T Consensus       125 ~VFG~Vv~G~dvv~~I~~~~t~~  147 (167)
T 3s6m_A          125 AVFGKVVEGQDIVDKIKAVKTGS  147 (167)
T ss_dssp             CEEEEEEECHHHHHHHTTSCBBC
T ss_pred             eEEEEEEcCHHHHHHHHcCCcCC
Confidence            99999999999999999999875

>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A

Probab=99.86  E-value=1.2e-22  Score=157.49  Aligned_cols=129  Identities=32%  Similarity=0.557  Sum_probs=94.0

Q ss_pred             ccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccce
Q psy8249          57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGI  136 (232)
Q Consensus        57 t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~  136 (232)
                      |+.|+++++||++.+|++++||++||+.++|+++.|||++++||+|||++...        +.    + .   .  ....
T Consensus        11 t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~--------~~----~-~---~--~g~~   72 (166)
T 1v9t_A           11 TSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQ--------MQ----Q-K---K--PNPP   72 (166)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBEEEEETTTEEEESSBCTT--------CC----B-C---C--CCCC
T ss_pred             eCCccEEEEEcCCCCcHHHHHHHHHhccCCCCCCEEEEEECCcEEEcCCcCcC--------CC----C-C---C--CCCc
Confidence            78999999999999999999999999999999999999999999999987531        10    0 0   0  0000


Q ss_pred             EEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCC-----Cccc
Q psy8249         137 VSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLK-----YTIF  211 (232)
Q Consensus       137 v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~-----~~~f  211 (232)
                        .    ++    +++      +.+-  |. -|.|        +|++..-...+...++|+..++++||..     |++|
T Consensus        73 --~----~d----E~~------~~l~--~~-~G~l--------smA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~tvF  125 (166)
T 1v9t_A           73 --I----KN----EAD------NGLR--NT-RGTI--------AMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVF  125 (166)
T ss_dssp             --B----CC----CGG------GSCC--CC-TTEE--------EECCCSSTTCBCSCEEEESSCCGGGSCCSSCCCCCEE
T ss_pred             --c----cc----ccc------cccc--CC-ceEE--------EEeecCCCCCccceEEEEeCCccccCCccCcCCeeEE
Confidence              0    00    100      0010  11 1333        3443322234556789999999999998     9999


Q ss_pred             ceeecchhhhhhhccCcCC
Q psy8249         212 GKVIDGLETLDNLEKLPVN  230 (232)
Q Consensus       212 g~V~~g~~v~~~i~~~~~~  230 (232)
                      |+|++|||||++|++++++
T Consensus       126 G~Vv~G~dvv~~I~~~~~~  144 (166)
T 1v9t_A          126 GKVVKGMDVADKISQVPTH  144 (166)
T ss_dssp             EEEEECHHHHHHHHTSCEE
T ss_pred             EEEecCHHHHHHHHhCCCC
Confidence            9999999999999999885

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A

Probab=99.86  E-value=5.7e-22  Score=154.35  Aligned_cols=142  Identities=29%  Similarity=0.445  Sum_probs=98.4

Q ss_pred             ceeEEeeCCCccccccceeccccCCCCcchhhhhhcc--CCC-CCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcc
Q psy8249          47 KGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCA--SDY-YNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFED  123 (232)
Q Consensus        47 ~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~--~~~-y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~  123 (232)
                      +.|+....+.|+.|+++++||++.+|++++||++||+  .++ |+++.|||++++||+|+|++    ..+.. .+..   
T Consensus        13 ~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~----~~~~g-~gg~---   84 (173)
T 2r99_A           13 QVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDF----TNHNG-TGGK---   84 (173)
T ss_dssp             EEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCT----TTSSS-SCCC---
T ss_pred             EEEEEEEECCccceeEEEEECCCCCcHHHHHHHHHhcccCCceecCCEEEEeeCCCEEEeCCc----CCCCC-CCCC---
Confidence            3455555567899999999999999999999999996  466 99999999999999999874    10000 0000   


Q ss_pred             cccccccccccceEEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeee
Q psy8249         124 EFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAH  203 (232)
Q Consensus       124 e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~  203 (232)
                          .+.                 +..|    .+. ....+|..-|.|        +|++...+ .+...++|+..++++
T Consensus        85 ----si~-----------------g~~f----~dE-~~~l~h~~~G~l--------smA~~gp~-t~gSQFfIt~~~~~~  129 (173)
T 2r99_A           85 ----SIY-----------------GKKF----DDE-NFILKHTGPGLL--------SMANSGPN-TNGSQFFLTCDKTDW  129 (173)
T ss_dssp             ----BTT-----------------BSCB----CCC-CCCSCCCSSSEE--------EECCSSTT-CBCSCEEEESSCCGG
T ss_pred             ----ccC-----------------CCcc----cCc-ccCcccCCCcEE--------EEccCCCC-CcccEEEEECCCCCc
Confidence                000                 0000    010 011122222444        33333333 455678999999999


Q ss_pred             cCCCCcccceeecchhhhhhhccCcCCC
Q psy8249         204 LDLKYTIFGKVIDGLETLDNLEKLPVNP  231 (232)
Q Consensus       204 ld~~~~~fg~V~~g~~v~~~i~~~~~~~  231 (232)
                      ||+.|++||+|++|||||++|++++++.
T Consensus       130 LDg~~tVFG~Vv~G~dvv~~I~~~~~~~  157 (173)
T 2r99_A          130 LDGKHVVFGEVTEGLDVLRQIEAQGSKD  157 (173)
T ss_dssp             GTTTSCEEEEEEECHHHHHHHHTTCCTT
T ss_pred             cCCCeeEEEEEEcCHHHHHHHHhCCCCC
Confidence            9999999999999999999999988753

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens}

Probab=99.86  E-value=4.5e-22  Score=156.32  Aligned_cols=142  Identities=34%  Similarity=0.481  Sum_probs=98.7

Q ss_pred             ceeEEeeCCCccccccceeccccCCCCcchhhhhhccCCC---CCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcc
Q psy8249          47 KGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFED  123 (232)
Q Consensus        47 ~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~---y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~  123 (232)
                      +.|+...-+.++.|+++++||++.+|++++||++||++++   |+++.|||++++|++|||++  .  .....-+..+..
T Consensus        24 ~v~~di~i~~~~~G~I~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~--~--~~~g~gg~si~g   99 (184)
T 3rdd_A           24 TVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDF--T--RHNGTGGKSIYG   99 (184)
T ss_dssp             EEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCSSTTCBCCEEETTTEEEECCT--T--TSSSSCCCBTTB
T ss_pred             EEEEEEeECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCcCcccCCCEEEEccCCcEEEeCCC--C--CCCCCCCcccCC
Confidence            4566666677899999999999999999999999998766   99999999999999999974  1  111000000000


Q ss_pred             cccccccccccceEEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeee
Q psy8249         124 EFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAH  203 (232)
Q Consensus       124 e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~  203 (232)
                      +   ..              ++.           ..  ..++..-|.|        ++++...+ .+...++|+..++++
T Consensus       100 ~---~~--------------~de-----------~~--~l~h~~~G~l--------smA~~gp~-s~gSQFfIt~~~~~~  140 (184)
T 3rdd_A          100 E---KF--------------EDE-----------NF--ILKHTGPGIL--------SMANAGPN-TNGSQFFICTAKTEW  140 (184)
T ss_dssp             S---CB--------------CCC-----------CC--CSCCCSTTEE--------EECCSSTT-CBSSCEEEESSCCGG
T ss_pred             C---cc--------------cCc-----------cc--ccccCCCcEE--------EEEeCCCC-CcccEEEEEeCCchh
Confidence            0   00              000           00  0011111333        23333322 445678999999999


Q ss_pred             cCCCCcccceeecchhhhhhhccCcCCC
Q psy8249         204 LDLKYTIFGKVIDGLETLDNLEKLPVNP  231 (232)
Q Consensus       204 ld~~~~~fg~V~~g~~v~~~i~~~~~~~  231 (232)
                      ||+.|+|||+|++||||||+|++++++.
T Consensus       141 LDg~~tVFG~Vv~G~dvv~~I~~~~~~~  168 (184)
T 3rdd_A          141 LDGKHVVFGKVKEGMNIVEAMERFGSRN  168 (184)
T ss_dssp             GTTTSCEEEEEEECHHHHHHHHTTCCTT
T ss_pred             hCCCceEEEEEecCHHHHHHHHhcCCCC
Confidence            9999999999999999999999988753

>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A

Probab=99.86  E-value=1.1e-22  Score=157.32  Aligned_cols=129  Identities=29%  Similarity=0.577  Sum_probs=93.3

Q ss_pred             ccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccce
Q psy8249          57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGI  136 (232)
Q Consensus        57 t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~  136 (232)
                      |+.|+++++||++.+|++++||++||+.++|+++.|||++++||+|||++.     .    + .  .+   .    ..  
T Consensus         6 T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~-----~----~-~--g~---~----~~--   64 (164)
T 1lop_A            6 TNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFE-----P----G-M--KQ---K----AT--   64 (164)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEECCEEETTTEEEESSEE-----T----T-T--EE---C----CC--
T ss_pred             eCCCCEEEEEeCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCceEecCCcc-----c----C-C--Cc---C----CC--
Confidence            789999999999999999999999999999999999999999999999853     0    0 0  00   0    00  


Q ss_pred             EEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCC--------C
Q psy8249         137 VSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLK--------Y  208 (232)
Q Consensus       137 v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~--------~  208 (232)
                            +. ....+++      +.|  .|. -|.|        ++++..-...+...++|+..++++||+.        |
T Consensus        65 ------g~-~~~dE~~------~~l--~~~-~G~l--------smA~~~~p~s~gSQFfI~~~~~~~Ld~~~~~~~~~~~  120 (164)
T 1lop_A           65 ------KE-PIKNEAN------NGL--KNT-RGTL--------AMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGY  120 (164)
T ss_dssp             ------CC-CBCCCCC------SSC--CCC-TTEE--------EECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTSCC
T ss_pred             ------CC-ccccccc------ccc--ccC-ccEE--------EEeecCCCCCccceEEEEcCCccccCCccccccCCce
Confidence                  00 0000110      001  111 2333        3333212234566789999999999997        9


Q ss_pred             cccceeecchhhhhhhccCcCC
Q psy8249         209 TIFGKVIDGLETLDNLEKLPVN  230 (232)
Q Consensus       209 ~~fg~V~~g~~v~~~i~~~~~~  230 (232)
                      ++||+|++|||||++|++++++
T Consensus       121 tvFG~Vv~G~dvv~~I~~~~t~  142 (164)
T 1lop_A          121 CVFAEVVDGMDEVDKIKGVATG  142 (164)
T ss_dssp             CEEEEEEECHHHHHHHHTSCEE
T ss_pred             EEEEEEecCHHHHHHHHhCCcC
Confidence            9999999999999999999885

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=99.86  E-value=2.6e-22  Score=158.05  Aligned_cols=142  Identities=31%  Similarity=0.511  Sum_probs=100.3

Q ss_pred             ceeEEeeCCCccccccceeccccCCCCcchhhhhhcc--CCC-CCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcc
Q psy8249          47 KGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCA--SDY-YNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFED  123 (232)
Q Consensus        47 ~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~--~~~-y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~  123 (232)
                      +.|+....+.++.|+++++||++.+|++++||++||+  .++ |+++.|||++++||+|||++..    +.. .+.    
T Consensus        17 ~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~----~~g-~gg----   87 (188)
T 3ich_A           17 KVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTR----GDG-TGG----   87 (188)
T ss_dssp             EEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBCCEEETTTEEEECCTTT----SSS-SCC----
T ss_pred             eEEEEEEECCEeceeEEEEEcCCCCcHHHHHHHHHhcccCCccccCCEEEEEECCCEEEcCCccC----CCC-CCC----
Confidence            4466666667899999999999999999999999996  568 9999999999999999998531    100 000    


Q ss_pred             cccccccccccceEEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeee
Q psy8249         124 EFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAH  203 (232)
Q Consensus       124 e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~  203 (232)
                      +   ...    |             ..    +.+. ....+|..-|.|        +|++... ..+...++|+...+++
T Consensus        88 ~---si~----g-------------~~----f~dE-~~~l~h~~~G~l--------smAn~gp-~tngSQFfIt~~~~~~  133 (188)
T 3ich_A           88 K---SIY----G-------------ER----FPDE-NFKLKHYGPGWV--------SMANAGK-DTNGSQFFITTVKTAW  133 (188)
T ss_dssp             C---BTT----B-------------SC----BCCC-CCCSCCCSTTEE--------EECCSST-TCBCSCEEEESSCCGG
T ss_pred             c---ccc----C-------------Cc----cccc-ccCcccCCCeEE--------EEccCCC-CCcccEEEEECCCCcc
Confidence            0   000    0             00    0000 011112222333        2333332 2455678999999999


Q ss_pred             cCCCCcccceeecchhhhhhhccCcCCC
Q psy8249         204 LDLKYTIFGKVIDGLETLDNLEKLPVNP  231 (232)
Q Consensus       204 ld~~~~~fg~V~~g~~v~~~i~~~~~~~  231 (232)
                      ||+.|+|||+|++|||||++|++++++.
T Consensus       134 LDg~~tVFG~Vv~G~dvv~~I~~~~~~~  161 (188)
T 3ich_A          134 LDGKHVVFGKVLEGMEVVRKVESTKTDS  161 (188)
T ss_dssp             GTTTSCEEEEEEECHHHHHHHHTSCBCT
T ss_pred             cCCCeeEEEEEeCCHHHHHHHHhCCcCC
Confidence            9999999999999999999999999874

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*

Probab=99.86  E-value=4.3e-22  Score=154.69  Aligned_cols=141  Identities=35%  Similarity=0.594  Sum_probs=98.1

Q ss_pred             ceeEEeeCCCccccccceeccccCCCCcchhhhhhccC-CC--------CCCceeEEeecCcEEEcCCCCCCCCCCCccC
Q psy8249          47 KGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCAS-DY--------YNGCIFHRNIKGFIVQTGDPTHTGKGGNSIW  117 (232)
Q Consensus        47 ~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~~-~~--------y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~  117 (232)
                      +.||....+.++.|+++++||++.+|++++||++||++ ++        |+++.|||++++||+|+|+   . ..+.   
T Consensus         5 ~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~g~g~~~~~~~Y~g~~FhRvi~~f~iQgGd---~-~~~~---   77 (170)
T 1qng_A            5 KVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGD---I-TNGN---   77 (170)
T ss_dssp             EEEEEEEESSSEEEEEEEEECTTTCHHHHHHHHHHHHTCEECTTSSEECCTTCBCCEEETTTEEEECC---T-TTSS---
T ss_pred             EEEEEEeECCEeceeEEEEEcCCCCCHHHHHHHHHhccCCcCccCccceECCCEEEEEECCCEEEcCC---c-cCCC---
Confidence            44666666678999999999999999999999999984 77        9999999999999999985   0 0000   


Q ss_pred             CCCCcccccccccccccceEEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEE
Q psy8249         118 GKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFIT  197 (232)
Q Consensus       118 ~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~  197 (232)
                      +               .|-.+.       .+..    +.+. ....+|..-|.|        +|++...+ .+...++|+
T Consensus        78 g---------------~gg~si-------~g~~----f~dE-~~~l~h~~~G~l--------smAn~gp~-tngSQFfIt  121 (170)
T 1qng_A           78 G---------------SGGESI-------YGRS----FTDE-NFNMKHDQPGLL--------SMANAGPN-TNSSQFFIT  121 (170)
T ss_dssp             S---------------SCCCBT-------TBSC----BCCC-CCCSCCCSTTEE--------EECCSSTT-CBCSCEEEE
T ss_pred             C---------------CCCccc-------cCCc----cccc-ccccccCCCCEE--------EEeecCCC-CcccEEEEE
Confidence            0               000000       0000    0000 001112212333        23333333 455678999


Q ss_pred             EeeeeecCCCCcccceeecchhhhhhhccCcCC
Q psy8249         198 YAAHAHLDLKYTIFGKVIDGLETLDNLEKLPVN  230 (232)
Q Consensus       198 I~~~~~ld~~~~~fg~V~~g~~v~~~i~~~~~~  230 (232)
                      ..++++||+.|++||+|++|||||++|++++++
T Consensus       122 ~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~t~  154 (170)
T 1qng_A          122 LVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAK  154 (170)
T ss_dssp             SSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT
T ss_pred             CCCCcccCCCeeEEEEEECCHHHHHHHHhCCCC
Confidence            999999999999999999999999999999884

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A

Probab=99.86  E-value=5.8e-22  Score=154.40  Aligned_cols=142  Identities=31%  Similarity=0.485  Sum_probs=98.6

Q ss_pred             ceeEEeeCCCccccccceeccccCCCCcchhhhhhccC--C--------CCCCceeEEeecCcEEEcCCCCCCCCCCCcc
Q psy8249          47 KGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCAS--D--------YYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI  116 (232)
Q Consensus        47 ~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~~--~--------~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~  116 (232)
                      +.|+....+.++.|+++++||++.+|++++||++||++  +        +|+++.|||++++||+|+|+   . ..+.  
T Consensus         5 ~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~g~~~~~~~Y~g~~FhRvi~~f~iQgGd---~-~~~~--   78 (173)
T 2igv_A            5 KVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGD---F-TRGN--   78 (173)
T ss_dssp             EEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECC---T-TTSS--
T ss_pred             EEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHhcCCCCCCccCccceECCCEEEEEECCCEEEcCC---C-CCCC--
Confidence            44666666778999999999999999999999999987  4        79999999999999999985   0 0000  


Q ss_pred             CCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeE
Q psy8249         117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFI  196 (232)
Q Consensus       117 ~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i  196 (232)
                       +               .|-.+.       .+..    +.+.. ...+|..-|.|        ++++...+ .+...++|
T Consensus        79 -G---------------~gg~si-------yg~~----f~dE~-~~l~h~~~G~l--------smAn~gp~-tngSQFfI  121 (173)
T 2igv_A           79 -G---------------TGGESI-------YGEK----FPDEN-FKEKHTGPGVL--------SMANAGPN-TNGSQFFL  121 (173)
T ss_dssp             -S---------------SCCCBT-------TBSC----BCCCC-CCSCCCSTTEE--------EECCSSTT-CBSSCEEE
T ss_pred             -C---------------CCCCcc-------CCCc----ccCcc-cccCCCCCeEE--------EEeeCCCC-CcceEEEE
Confidence             0               000000       0000    00100 01112212333        33343333 45567899


Q ss_pred             EEeeeeecCCCCcccceeecchhhhhhhccCcCCC
Q psy8249         197 TYAAHAHLDLKYTIFGKVIDGLETLDNLEKLPVNP  231 (232)
Q Consensus       197 ~I~~~~~ld~~~~~fg~V~~g~~v~~~i~~~~~~~  231 (232)
                      +...+++||+.|++||+|++|||||++|++++++.
T Consensus       122 t~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~~  156 (173)
T 2igv_A          122 CTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQS  156 (173)
T ss_dssp             ESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTT
T ss_pred             EcCCccccCCCeeEEEEEecCHHHHHHHHhCCCCC
Confidence            99999999999999999999999999999988753

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*

Probab=99.85  E-value=1.1e-21  Score=154.06  Aligned_cols=141  Identities=32%  Similarity=0.502  Sum_probs=97.8

Q ss_pred             ceeEEeeCCCccccccceeccccCCCCcchhhhhhccC--CC--------CCCceeEEeecCcEEEcCCCCCCCCCCCcc
Q psy8249          47 KGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCAS--DY--------YNGCIFHRNIKGFIVQTGDPTHTGKGGNSI  116 (232)
Q Consensus        47 ~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~~--~~--------y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~  116 (232)
                      +.|+....+.++.|+++++||++.+|++++||++||++  ++        |+++.|||++++||+|+|+   . ..+.  
T Consensus        21 ~v~~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~Y~g~~FhRVi~~f~iQgGd---~-~~~~--   94 (186)
T 2poy_A           21 VVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGD---F-TRGD--   94 (186)
T ss_dssp             EEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECC---T-TTSS--
T ss_pred             EEEEEEeECCEecccEEEEEeCCCCcHHHHHHHHHhcccCCccccCccceECCCEEEEEeCCCEEEeCC---C-CCCC--
Confidence            45666666678999999999999999999999999974  56        9999999999999999985   0 0000  


Q ss_pred             CCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeE
Q psy8249         117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFI  196 (232)
Q Consensus       117 ~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i  196 (232)
                       +               .|-.+.       .+..    +.+.. ....|..-|.|        ++++...+ .+...++|
T Consensus        95 -G---------------~gg~si-------~g~~----f~dE~-~~l~h~~~G~l--------sMAn~gpn-tngSQFFI  137 (186)
T 2poy_A           95 -G---------------TGGESI-------YGSK----FRDEN-FVYTHDAPFLL--------SMANAGPN-TNGSQFFI  137 (186)
T ss_dssp             -S---------------SCCCCT-------TC-C----BCCCC-CCSCCCSTTEE--------EECCSSTT-CBCSCEEE
T ss_pred             -C---------------CCCCcc-------CCCc----ccCcc-cccccCCCcEE--------EEeeCCCC-CcccEEEE
Confidence             0               000000       0000    00100 01112212333        23343333 45567899


Q ss_pred             EEeeeeecCCCCcccceeecchhhhhhhccCcCC
Q psy8249         197 TYAAHAHLDLKYTIFGKVIDGLETLDNLEKLPVN  230 (232)
Q Consensus       197 ~I~~~~~ld~~~~~fg~V~~g~~v~~~i~~~~~~  230 (232)
                      +..++++||+.|+|||+|++|||||++|++++++
T Consensus       138 t~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~  171 (186)
T 2poy_A          138 TTVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGSQ  171 (186)
T ss_dssp             ESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCCT
T ss_pred             ECCCCcccCCCeeEEEEEecCHHHHHHHHhCCCC
Confidence            9999999999999999999999999999999874

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1

Probab=99.83  E-value=2.5e-21  Score=156.20  Aligned_cols=142  Identities=35%  Similarity=0.536  Sum_probs=99.3

Q ss_pred             ceeEEeeCCCccccccceeccccCCCCcchhhhhhccCC--------CCCCceeEEeecCcEEEcCCCCCCCCCCCccCC
Q psy8249          47 KGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASD--------YYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWG  118 (232)
Q Consensus        47 ~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~~~--------~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~  118 (232)
                      ..|+....+.++.|+|+++||++.+|++++||++||+++        +|+++.|||++++||+|||+   . ..+.   +
T Consensus        61 ~V~~disi~~t~~G~I~ieL~~d~aP~tv~NF~~L~~~~~g~~g~~~~Y~gt~FHRVi~~FmiQgGD---~-~~g~---G  133 (229)
T 1z81_A           61 VVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGD---F-INHN---G  133 (229)
T ss_dssp             EEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSSSSBCSSTTEECCEEETTTEEEECC---T-TTSS---S
T ss_pred             EEEEEEeECCeecccEEEEEcCCCCCHHHHHHHHHhhCCCCCcCCCceECCCEEEEEeCCCEEEcCC---C-cCCC---C
Confidence            346665556688999999999999999999999999987        69999999999999999985   0 0000   0


Q ss_pred             CCCcccccccccccccceEEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEE
Q psy8249         119 KKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITY  198 (232)
Q Consensus       119 ~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I  198 (232)
                                     .|-.+.       .+..|    .+. ....+|..-|.|        ++++...+ .+...++|+.
T Consensus       134 ---------------~Gg~si-------yg~~f----~dE-~~~l~h~~~G~L--------sMAn~gpn-tngSQFFIt~  177 (229)
T 1z81_A          134 ---------------SGSLSI-------YGEKF----DDE-NFDIKHDKEGLL--------SMANSGPN-TNGCQFFITT  177 (229)
T ss_dssp             ---------------CCCCBT-------TBSCC----CCC-CCCSCCCSTTEE--------EECCSSSS-CCCSCEEEES
T ss_pred             ---------------CCCCcc-------CCCcc----ccc-ccccccCCCcEE--------EeccCCCC-CcccEEEEEC
Confidence                           000000       00000    000 001112212333        33444333 4566789999


Q ss_pred             eeeeecCCCCcccceee--cchhhhhhhccCcCCC
Q psy8249         199 AAHAHLDLKYTIFGKVI--DGLETLDNLEKLPVNP  231 (232)
Q Consensus       199 ~~~~~ld~~~~~fg~V~--~g~~v~~~i~~~~~~~  231 (232)
                      ..+++||+.|+|||+|+  +|||||++|+++++++
T Consensus       178 ~~~~~LDg~~tVFG~Vv~~eGmdVv~~I~~~~t~~  212 (229)
T 1z81_A          178 KKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTP  212 (229)
T ss_dssp             SCCGGGBTTBCEEEEECSHHHHHHHHHHHHSCBCT
T ss_pred             CCCcccCCCeeEEEEEEecCcHHHHHHHHhCCCCC
Confidence            99999999999999999  9999999999999875

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}

Probab=99.82  E-value=6.3e-21  Score=163.23  Aligned_cols=149  Identities=23%  Similarity=0.337  Sum_probs=95.3

Q ss_pred             ccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCc---cCCCCCcccccccccccc
Q psy8249          57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNS---IWGKKFEDEFKETLKHSE  133 (232)
Q Consensus        57 t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~---~~~~~~~~e~~~~l~~~~  133 (232)
                      ++.|+|+++||++.+|+|++||++||+.++|+|+.|||+ ++||+||||+.+++.+...   ..+..++.|....    .
T Consensus       185 ~~~G~I~IeL~~d~AP~Tv~NFl~L~~~GfYdGt~FHRV-~gFmIQgGDp~g~G~G~~~~~~g~~~~iP~E~~~~----G  259 (369)
T 3rfy_A          185 IEDCVFRIVLDGYNAPVTAGNFVDLVERHFYDGMEIQRS-DGFVVQTGDPEGPAEGFIDPSTEKTRTVPLEIMVT----G  259 (369)
T ss_dssp             CSEEEEEEEEETTTCHHHHHHHHHHHHTTTTTTEECEEE-EEEEECCCCCCCCCSCCCSCCCCCCCSSSSSSCSS----S
T ss_pred             ccceEEEEEEeCCCCcHHHHHHHHHhhcCCcCCCeeeee-CCeeEecCCCCCCCCCccCcccCcCcccCcccccc----C
Confidence            568999999999999999999999999999999999999 9999999999876554211   1223444453210    0


Q ss_pred             cceEEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccC--CCCCCCCceeeEEE-------eeeeec
Q psy8249         134 RGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKL--PVNPNHKPIFFITY-------AAHAHL  204 (232)
Q Consensus       134 ~g~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~--~~~~~~~P~~~i~I-------~~~~~l  204 (232)
                      .+.-.+   +.......|+-.....+     |..-|.|        +|++.  ..+ .+...++|+.       ..+++|
T Consensus       260 ~g~piy---g~~fedegf~~~~~~L~-----h~~~G~L--------sMAns~~gPn-SngSQFFItl~d~~L~~~~~~~L  322 (369)
T 3rfy_A          260 EKTPFY---GSTLEELGLYKAQVVIP-----FNAFGTM--------AMAREEFEND-SGSSQVFWLLKESELTPSNSNIL  322 (369)
T ss_dssp             SCCSCC---CSSTGGGTEEEEEEEEC-----CCCCCCC--------CCSSCCCCCC-CSSCCCCCCCEEEEECSCCCSSS
T ss_pred             CCCCcC---CCccccccccccccccc-----cCCCceE--------EEeecCCCCC-CccceEEEEecccccCCCCCccc
Confidence            000000   00000000100000000     1112222        33333  222 3445677877       368999


Q ss_pred             CCCCcccceeecchhhhhhhccC
Q psy8249         205 DLKYTIFGKVIDGLETLDNLEKL  227 (232)
Q Consensus       205 d~~~~~fg~V~~g~~v~~~i~~~  227 (232)
                      |+.|+|||+|++|||||++|++.
T Consensus       323 DgkytVFG~VveGmdVVdkI~~G  345 (369)
T 3rfy_A          323 DGRYAVFGYVTDNEDFLADLKVG  345 (369)
T ss_dssp             CSCEEEEEEEEESTTGGGGCCTT
T ss_pred             CCCeeEEEEEecCHHHHHHHhCC
Confidence            99999999999999999999875

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus}

Probab=99.82  E-value=2.9e-21  Score=156.82  Aligned_cols=145  Identities=23%  Similarity=0.302  Sum_probs=98.5

Q ss_pred             ceeEEeeCCCccccccceeccccCCCCcchhhhhhccCC-------------------C-CCCceeEEeecCcEEEcCCC
Q psy8249          47 KGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASD-------------------Y-YNGCIFHRNIKGFIVQTGDP  106 (232)
Q Consensus        47 ~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~~~-------------------~-y~g~~~~rv~~~~~vq~G~~  106 (232)
                      +.||....+.++.|+|+++||++.+|++++||++||++.                   + |+++.|||++++||||||++
T Consensus        16 ~v~~di~i~~t~~G~I~ieL~~d~aP~tv~NF~~L~~g~~~~~~p~~~~~~~~~~G~~~~Y~gt~FHRVi~~FmiQgGd~   95 (234)
T 2ose_A           16 RVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTYEGCKFHNVLHNNYIVSGDI   95 (234)
T ss_dssp             EEEEEEEETTEEEEEEEEEECGGGCHHHHHHHHHHHHTCCCC---------------CCCSTTCBCCEEETTTEEEECCC
T ss_pred             EEEEEEEECCcccceEEEEEcCCCCcHHHHHHHHHhcCCccccccccccccccccCCceEECCcEEEEEECCCEEEcCCc
Confidence            346665556689999999999999999999999999953                   6 99999999999999999985


Q ss_pred             CCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhccc---
Q psy8249         107 THTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEK---  183 (232)
Q Consensus       107 ~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~---  183 (232)
                      ..    +.. .+..       ...    |..    ..|.    +|=       ...-.|..-|.|        +|++   
T Consensus        96 ~~----g~G-~Gg~-------siy----g~~----~~p~----~f~-------~~~l~h~~~G~l--------sMAn~~~  136 (234)
T 2ose_A           96 YN----SNG-SSAG-------TVY----CDE----PIPP----VFG-------DYFYPHESKGLL--------SLVPYTD  136 (234)
T ss_dssp             C---------CCCC-------CTT----TTC----CBCC----CCC-------SCCCCSCSTTEE--------EECCEEC
T ss_pred             cC----CCC-CCCc-------ccc----CCc----cCcc----ccc-------CcCccCCCCCEE--------EEecccc
Confidence            41    100 0000       000    000    0000    010       011122222333        2333   


Q ss_pred             -CCCCCCCCceeeEEEee------eeecCCCCcccceeecchhhhhhhccCcCCC
Q psy8249         184 -LPVNPNHKPIFFITYAA------HAHLDLKYTIFGKVIDGLETLDNLEKLPVNP  231 (232)
Q Consensus       184 -~~~~~~~~P~~~i~I~~------~~~ld~~~~~fg~V~~g~~v~~~i~~~~~~~  231 (232)
                       ... ..+...++|+...      +++||+.|+|||+|++|||||++|++++++.
T Consensus       137 ~~gp-ntngSQFFIt~~~~~~~~g~p~LDg~~tVFG~Vv~GmdVv~~I~~~~t~~  190 (234)
T 2ose_A          137 ESGN-RYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSMIKPY  190 (234)
T ss_dssp             TTSC-EEBCSCEEEESSCCCTTSSGGGSCTTSEEEEEEEECHHHHHHHHHHTCCC
T ss_pred             cCCC-CCccceEEEEecCccccCCCcccCCCeeEEEEEeCCHHHHHHHHhCCcCC
Confidence             222 2345578999998      9999999999999999999999999998875

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1

Probab=99.82  E-value=2.9e-21  Score=150.22  Aligned_cols=133  Identities=35%  Similarity=0.539  Sum_probs=87.2

Q ss_pred             CccccccceeccccCCCCcchhhhhhcc--CCC-CCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCccccccccccc
Q psy8249          56 PTHTGDIKIELFCEDCPKTCENFLALCA--SDY-YNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHS  132 (232)
Q Consensus        56 ~t~~G~i~i~l~~~~~P~~~~~F~~l~~--~~~-y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~  132 (232)
                      .|+.|+++++||++.+|++++||++||+  .++ |+++.|||++++||+|+|++..    +.   +              
T Consensus        18 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~----~~---g--------------   76 (172)
T 2c3b_A           18 ETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTR----GN---G--------------   76 (172)
T ss_dssp             CCEEEEEEEEECTTTSHHHHHHHHHHHHSCTTTSSTTCBCCEEETTTEEEECC---------------------------
T ss_pred             ecccccEEEEEcCCCCcHHHHHHHHHhccCCCcccCCCEEEEEeCCCEEEeCCcCC----CC---C--------------
Confidence            3677999999999999999999999999  457 9999999999999999998431    00   0              


Q ss_pred             ccceEEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCcccc
Q psy8249         133 ERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYTIFG  212 (232)
Q Consensus       133 ~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~~fg  212 (232)
                       .|--+.       .+..    +.+. ....+|..-|.|        ++++...+ .+...++|+...+++||+.|++||
T Consensus        77 -~gg~si-------~g~~----f~dE-~~~~~h~~~G~l--------smA~~gp~-t~gSQFfIt~~~~~~LDg~~tvFG  134 (172)
T 2c3b_A           77 -TGGRSI-------YGDK----FADE-NFSRKHDKKGIL--------SMANAGPN-TNGSQFFITTAVTSWLDGKHVVFG  134 (172)
T ss_dssp             -----------------------------CHHHHHTCEE--------EEC----------CEEEECSCCTTCCSCCEEEE
T ss_pred             -CCCccc-------CCCc----ccCc-ccccccCCCeEE--------EEeeCCCC-CcccEEEEECCCCCccCCCeeEEE
Confidence             000000       0000    0000 011112222333        23333222 455678999999999999999999


Q ss_pred             eeec--chhhhhhhccCcCCC
Q psy8249         213 KVID--GLETLDNLEKLPVNP  231 (232)
Q Consensus       213 ~V~~--g~~v~~~i~~~~~~~  231 (232)
                      +|++  |||||++|+++++++
T Consensus       135 ~Vv~~~G~dvv~~I~~~~t~~  155 (172)
T 2c3b_A          135 EVADEKSYSVVKEIEALGSSS  155 (172)
T ss_dssp             EECSHHHHHHHHHHHTTCCTT
T ss_pred             EEEecCCHHHHHHHHhCCCCC
Confidence            9999  999999999998864

>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.81  E-value=5.9e-21  Score=154.73  Aligned_cols=134  Identities=39%  Similarity=0.663  Sum_probs=91.6

Q ss_pred             ccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccce
Q psy8249          57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGI  136 (232)
Q Consensus        57 t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~  136 (232)
                      |+.|+|+++||++.+|++++||++||+.++|+++.|||++++||+|||++..+   +.  -+..+... ...+.      
T Consensus        28 T~~G~I~ieL~~d~aP~tv~NF~~L~~~g~Ydgt~FhRVi~~FmiQgGdp~~~---G~--Gg~si~~~-g~~f~------   95 (232)
T 3bkp_A           28 TSLGDLDVELWARECPLACRNFVQLCLEGYYVNTIFHRVVKDFIVQGGDPTGT---GR--GGADTTFD-GKPFD------   95 (232)
T ss_dssp             ETTEEEEEEEBTTTCHHHHHHHHHHHHHTTTTTCBEEEEETTTEEEECCTTSS---SS--CCCCCTTT-TCCBC------
T ss_pred             ECCCcEEEEEcCCCCcHHHHHHHHHhhcCccCCCEEEEEeCCCEEEcCCCCCC---CC--CCCccccC-CCccC------
Confidence            67899999999999999999999999999999999999999999999997631   11  01110000 00000      


Q ss_pred             EEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCC-------------CCCCceeeEEEeeeee
Q psy8249         137 VSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVN-------------PNHKPIFFITYAAHAH  203 (232)
Q Consensus       137 v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~-------------~~~~P~~~i~I~~~~~  203 (232)
                              +    ++      .+.|  +|..-|.|        +|++....             ..+...++|+...+++
T Consensus        96 --------d----E~------~~~l--~h~~~G~l--------sMA~~g~~~~~~~n~e~g~~~~sngSQFFIt~~~~p~  147 (232)
T 3bkp_A           96 --------V----ET------HPRL--KFRYRGLV--------GVANLGRSSKDAENDERGRSLGTNGNQFFITLARADV  147 (232)
T ss_dssp             --------C----CC------CTTC--CCCSTTEE--------EECCCC----------------CBCSCEEEESSCCGG
T ss_pred             --------C----cc------ccCc--CcCCCeEE--------EEeccCCcccccccccccccCCCcCCEEEEECCCCcc
Confidence                    0    00      0011  11111333        22222211             2455678999999999


Q ss_pred             cCCCCcccceeecchhh--hhhhccCcCCC
Q psy8249         204 LDLKYTIFGKVIDGLET--LDNLEKLPVNP  231 (232)
Q Consensus       204 ld~~~~~fg~V~~g~~v--~~~i~~~~~~~  231 (232)
                      ||+.|+|||+|+ ||+|  |++|++++++.
T Consensus       148 LDg~~tVFG~Vv-g~~v~~v~kI~~~~t~~  176 (232)
T 3bkp_A          148 LNNAYTLFGKVT-GHTLYNLMKFNDLEVGK  176 (232)
T ss_dssp             GTTTSCEEEEEC-GGGHHHHHHHTTSCBCG
T ss_pred             cCCCccEEEEEE-eCchHHHHHHHcCCcCC
Confidence            999999999999 7766  89999999863

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.79  E-value=8.7e-20  Score=158.68  Aligned_cols=140  Identities=35%  Similarity=0.549  Sum_probs=98.1

Q ss_pred             eeEEeeCCCccccccceeccccCCCCcchhhhhhccC--------C---CCCCceeEEeecCcEEEcCCCCCCCCCCCcc
Q psy8249          48 GFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCAS--------D---YYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI  116 (232)
Q Consensus        48 ~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~~--------~---~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~  116 (232)
                      .|+....+.++.|+|+++||++.+|+|++||++||++        +   +|+|+.||||+++|||||||   . ..+.  
T Consensus        18 v~~~~~~~~~~~G~i~~~l~~~~~P~t~~nf~~l~~~~~~~~~~~g~~~~y~~~~fhrv~~~f~~q~Gd---~-~~~~--   91 (370)
T 1ihg_A           18 VFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGD---F-SNQN--   91 (370)
T ss_dssp             EEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEETTTEEEECC---T-TTSS--
T ss_pred             EEEEEEECCEecccEEEEEcCCCCchHHHHHHHHcCCCcCcCccCCCcceeCCcEeEEEECCcEEECCC---C-CCCC--
Confidence            4566566668899999999999999999999999997        5   69999999999999999985   1 0000  


Q ss_pred             CCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeE
Q psy8249         117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFI  196 (232)
Q Consensus       117 ~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i  196 (232)
                       |               .|--+.       .+..|    .+. .....|..-|.|        ++++... ..+...++|
T Consensus        92 -g---------------~g~~~~-------~~~~~----~~e-~~~~~~~~~g~l--------~ma~~~~-~~~~sqffi  134 (370)
T 1ihg_A           92 -G---------------TGGESI-------YGEKF----EDE-NFHYKHDKEGLL--------SMANAGS-NTNGSQFFI  134 (370)
T ss_dssp             -S---------------SCCCBT-------TBSCB----CCC-CCCBCCCSTTEE--------EECCSST-TCBCSCEEE
T ss_pred             -C---------------CCCCCC-------CCCCc----CCC-cCCcCCCCCeEE--------EEeeCCC-CCCCceEEE
Confidence             0               000000       00000    000 001112222333        3444442 355667999


Q ss_pred             EEeeeeecCCCCcccceeecchhhhhhhccCcCC
Q psy8249         197 TYAAHAHLDLKYTIFGKVIDGLETLDNLEKLPVN  230 (232)
Q Consensus       197 ~I~~~~~ld~~~~~fg~V~~g~~v~~~i~~~~~~  230 (232)
                      +...+++||+.|+|||+|++||+||++|++++++
T Consensus       135 ~~~~~~~ld~~~~vfG~v~~g~~v~~~i~~~~~~  168 (370)
T 1ihg_A          135 TTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVK  168 (370)
T ss_dssp             ESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEE
T ss_pred             eCCCCcccCCCceEEEEEecCHHHHHHHHcCCCC
Confidence            9999999999999999999999999999998765

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens}

Probab=99.79  E-value=5.2e-20  Score=144.48  Aligned_cols=131  Identities=37%  Similarity=0.674  Sum_probs=91.9

Q ss_pred             ccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccce
Q psy8249          57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGI  136 (232)
Q Consensus        57 t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~  136 (232)
                      |+.|+++++||++.+|++++||++||+.++|+++.|||++++|++|||++..   .+.  -+..+..+   .+       
T Consensus        31 T~~G~I~ieL~~~~aP~tv~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~---~g~--gg~si~g~---~~-------   95 (185)
T 2hq6_A           31 TTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTG---TGS--GGESIYGA---PF-------   95 (185)
T ss_dssp             ETTEEEEEEEBTTTCHHHHHHHHHHHHTTTTTTEECCEEETTTEEEECCTTS---SSS--CCCCTTSS---CB-------
T ss_pred             eCCccEEEEEeCCCCcHHHHHHHHHhhcCccCCCEEEEEECCCEEEcCCCCC---CCC--CCCcccCC---cc-------
Confidence            5789999999999999999999999999999999999999999999998741   110  00000000   00       


Q ss_pred             EEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCcccceeec
Q psy8249         137 VSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYTIFGKVID  216 (232)
Q Consensus       137 v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~~fg~V~~  216 (232)
                             ++    ++.      +.|  +|..-|.|        ++++... ..+...++|+..++++||+.|++||+|+ 
T Consensus        96 -------~d----E~~------~~l--~h~~~G~l--------sMA~~g~-~s~gSQFFIt~~~~~~LDg~~tVFG~V~-  146 (185)
T 2hq6_A           96 -------KD----EFH------SRL--RFNRRGLV--------AMANAGS-HDNGSQFFFTLGRADELNNKHTIFGKVT-  146 (185)
T ss_dssp             -------CC----CCB------TTB--CSCSSSEE--------EECCSST-TCBCSCEEEESSCCGGGTTTSCEEEEEC-
T ss_pred             -------cc----ccc------cCc--ccCCCeEE--------EEccCCC-CCccceEEEECCCCCccCCCceEEEEEE-
Confidence                   00    100      000  11112333        2333332 3455678999999999999999999999 


Q ss_pred             chhhh--hhhccCcCCC
Q psy8249         217 GLETL--DNLEKLPVNP  231 (232)
Q Consensus       217 g~~v~--~~i~~~~~~~  231 (232)
                      |++|+  ++|+++++++
T Consensus       147 G~~v~~~~~i~~~~~~~  163 (185)
T 2hq6_A          147 GDTVYNMLRLSEVDIDD  163 (185)
T ss_dssp             GGGHHHHHHTTCSCBCT
T ss_pred             eCeeehhhHHhhCCcCC
Confidence            89885  6899988864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	232
d1xwna1	166	b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isome	2e-48
d1zkca1	178	b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans iso	1e-45
d2ok3a1	159	b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B	6e-42
d2cfea1	162	b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s	7e-39
d2b71a1	169	b.62.1.1 (A:23-191) Cyclophilin-like protein PY006	3e-38
d1a33a_	174	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (	2e-35
d2fu0a1	155	b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {	2e-35
d1qnga_	170	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium	2e-34
d1w74a_	171	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	3e-33
d1xo7a_	166	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosom	6e-33
d2rmca_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus	9e-33
d2c3ba1	171	b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Asper	3e-32
d1h0pa_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabd	3e-32
d2igva1	172	b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caeno	9e-32
d1qoia_	173	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Hom	1e-30
d1ihga2	195	b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain	2e-30
d2a2na1	164	b.62.1.1 (A:483-646) Peptidylprolyl isomerase doma	2e-29
d1lopa_	164	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	1e-28
d2z6wa1	164	b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl c	1e-28
d1z81a1	186	b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plas	2e-27
d2r99a1	161	b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl	2e-26
d1v9ta_	166	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	4e-24

>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  154 bits (391), Expect = 2e-48
 Identities = 67/137 (48%), Positives = 89/137 (64%)

Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T  G I +EL+ +  PKTC+NF  L    YYNG  FHR IK F++Q GDPT TG+GG SI
Sbjct: 18  TSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRGGASI 77

Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
           +GK+FEDE    LK +  GI++MAN GP+TN SQFF+T A    LD K+TIFG+V  G  
Sbjct: 78  YGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIG 137

Query: 177 TLDNLEKLPVNPNHKPI 193
            ++ +  +  N   +P+
Sbjct: 138 MVNRVGMVETNSQDRPV 154

>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]} Length = 178

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  147 bits (373), Expect = 1e-45
 Identities = 75/138 (54%), Positives = 102/138 (73%), Gaps = 1/138 (0%)

Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T+ GD+ +EL C+  PKTCENF+ LC   YY+G IFHR+I+ F++Q GDPT TG GG S 
Sbjct: 7   TNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPTGTGTGGESY 66

Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
           WGK F+DEF+  L H+ RGI+SMAN+GPN+N SQFFIT+ + A+LD K+TIFG+V+ GF+
Sbjct: 67  WGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFD 126

Query: 177 TLDNLEKLPVNP-NHKPI 193
            L  +E +  +P   +P 
Sbjct: 127 VLTAMENVESDPKTDRPK 144

>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  138 bits (347), Expect = 6e-42
 Identities = 108/138 (78%), Positives = 120/138 (86%), Gaps = 1/138 (0%)

Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T  GDIKIE+FCE  PKTCENFLALCAS+YYNGCIFHRNIKGF+VQTGDPT TG+GGNSI
Sbjct: 7   TDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRGGNSI 66

Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
           WGKKFEDE+ E LKH+ RG+VSMANNGPNTN SQFFITY    HLD+KYT+FGKVIDG E
Sbjct: 67  WGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLE 126

Query: 177 TLDNLEKLPVNP-NHKPI 193
           TLD LEKLPVN   ++P+
Sbjct: 127 TLDELEKLPVNEKTYRPL 144

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]} Length = 162

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

 Score =  130 bits (327), Expect = 7e-39
 Identities = 65/138 (47%), Positives = 84/138 (60%), Gaps = 6/138 (4%)

Query: 60  GDIKIELFCEDCPKTCENFLALCASD---YYNGCIFHRNIKGFIVQTGDPT-HTGKGGNS 115
           G IK +LF +  PKT  NF ALC  +    Y G  FHR I  F++Q GD T   G GG S
Sbjct: 16  GTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFMLQGGDFTAGNGTGGKS 75

Query: 116 IWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGF 175
           I+G KF DE  + LKH++ G++SMAN GPNTN SQFFIT    + LD K+ +FG+VIDG 
Sbjct: 76  IYGAKFADENFQ-LKHNKPGLLSMANAGPNTNGSQFFITTVVTSWLDGKHVVFGEVIDGM 134

Query: 176 ETLDNLEKLPVNPNHKPI 193
             +  +E    + + KP 
Sbjct: 135 NVVKAIEAEG-SGSGKPR 151

>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]} Length = 169

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]

 Score =  129 bits (324), Expect = 3e-38
 Identities = 70/137 (51%), Positives = 92/137 (67%)

Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T+ GD ++EL+    PKTC NF  LC   +Y+  IFHR I  F++Q GDPT TGKGG SI
Sbjct: 23  TNLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQGGDPTGTGKGGKSI 82

Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
           +G+ FEDE  + LKH+  GI+SM+NNGPNTN+SQFFIT A   HLD K+TIF +V     
Sbjct: 83  YGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMT 142

Query: 177 TLDNLEKLPVNPNHKPI 193
            ++N+  +     +KPI
Sbjct: 143 CIENIASVQTTATNKPI 159

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]} Length = 174

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

 Score =  121 bits (305), Expect = 2e-35
 Identities = 57/149 (38%), Positives = 78/149 (52%), Gaps = 11/149 (7%)

Query: 60  GDIKIELFCEDCPKTCENFLALCASD-----------YYNGCIFHRNIKGFIVQTGDPTH 108
           G I +EL+ +  P+TC NFL LC              +Y G  FHR IK F++Q GD T 
Sbjct: 18  GRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTK 77

Query: 109 TGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIF 168
               G         D+ +  +KH E  +VSMAN GPNTN SQFFIT     HL+  + +F
Sbjct: 78  GDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVF 137

Query: 169 GKVIDGFETLDNLEKLPVNPNHKPIFFIT 197
           GKV+ G E +  +E L  N  ++P+  + 
Sbjct: 138 GKVVSGQEVVTKIEYLKTNSKNRPLADVV 166

>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]} Length = 155

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]

 Score =  121 bits (303), Expect = 2e-35
 Identities = 73/137 (53%), Positives = 92/137 (67%)

Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T  GDI I LF ++C KT +NF     + YYN CIFHR IK F+VQTGDP+  G GG SI
Sbjct: 8   TTMGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPSGDGTGGESI 67

Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
           WG +FEDEF + L HS+  +VSMAN GPNTN SQFFIT      LD K+T+FGKV  G +
Sbjct: 68  WGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSK 127

Query: 177 TLDNLEKLPVNPNHKPI 193
            + ++EK+  +   KP+
Sbjct: 128 IVLDIEKVRTDKRDKPL 144

>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]} Length = 170

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]

 Score =  119 bits (298), Expect = 2e-34
 Identities = 62/147 (42%), Positives = 82/147 (55%), Gaps = 12/147 (8%)

Query: 57  THTGDIKIELFCEDCPKTCENFLALCASD---------YYNGCIFHRNIKGFIVQTGDP- 106
           ++ G I  ELF +  P+TCENF ALC  +         +Y   IFHR I  F+ Q GD  
Sbjct: 15  SNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDIT 74

Query: 107 THTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYT 166
              G GG SI+G+ F DE    +KH + G++SMAN GPNTN+SQFFIT      LD K+ 
Sbjct: 75  NGNGSGGESIYGRSFTDENFN-MKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHV 133

Query: 167 IFGKVIDGFETLDNLEKLPVNPNHKPI 193
           +FGKVI+G   +  +EK     +    
Sbjct: 134 VFGKVIEGMNVVREMEKEGA-KSGYVK 159

>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 171

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  116 bits (290), Expect = 3e-33
 Identities = 64/195 (32%), Positives = 92/195 (47%), Gaps = 40/195 (20%)

Query: 1   MSVSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTG 60
            + +LHT+ GDIKI LF    PKT  NF+ L                             
Sbjct: 4   ATATLHTNRGDIKIALFGNHAPKTVANFVGLA---------------------------- 35

Query: 61  DIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKK 120
                        + +N     +  +Y+G +FHR I+GF++Q GDPT TG+GG       
Sbjct: 36  -------QGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPTGTGRGGPGYK--- 85

Query: 121 FEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVID--GFETL 178
           F DEF   L+  +  +++MAN GP TN SQFFIT     HL+ ++TIFG+VID      +
Sbjct: 86  FADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVV 145

Query: 179 DNLEKLPVNPNHKPI 193
           + + K   + N +P 
Sbjct: 146 EAISKTATDGNDRPT 160

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

 Score =  114 bits (287), Expect = 6e-33
 Identities = 60/142 (42%), Positives = 80/142 (56%), Gaps = 6/142 (4%)

Query: 60  GDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPT-HTGKGGNS 115
           G + I LF  D PKT ENF  L + +    Y G IFHR I+ F++Q GD T   G GG S
Sbjct: 20  GRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNFMIQGGDFTNFDGTGGKS 79

Query: 116 IWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGF 175
           I+G +F+DE          G VSMAN GPN+N SQFF+T A    LD ++ +FGKV++G 
Sbjct: 80  IYGTRFDDEN--LKIKHFVGAVSMANAGPNSNGSQFFVTTAPTPWLDGRHVVFGKVVEGM 137

Query: 176 ETLDNLEKLPVNPNHKPIFFIT 197
           + +  +E      N KP   + 
Sbjct: 138 DVVKKVENTKTGLNDKPKKAVK 159

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

 Score =  115 bits (288), Expect = 9e-33
 Identities = 68/152 (44%), Positives = 87/152 (57%), Gaps = 5/152 (3%)

Query: 60  GDIKIELFCEDCPKTCENFLALCASD---YYNGCIFHRNIKGFIVQTGDPT-HTGKGGNS 115
           G I I LF    PKT ENF+AL   +    Y G IFHR IK F++Q GD T   G GG S
Sbjct: 22  GRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFMIQGGDFTARDGTGGMS 81

Query: 116 IWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGF 175
           I+G+ F DE    LKH   G VSMAN GP+TN SQFFIT      LD K+ +FGKV+DG 
Sbjct: 82  IYGETFPDENF-KLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGM 140

Query: 176 ETLDNLEKLPVNPNHKPIFFITYAAHAHLDLK 207
             + ++E    + + +P+   T      +D+K
Sbjct: 141 TVVHSIELQATDGHDRPLTDCTIVNSGKIDVK 172

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]} Length = 171

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

 Score =  113 bits (283), Expect = 3e-32
 Identities = 61/140 (43%), Positives = 78/140 (55%), Gaps = 7/140 (5%)

Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDP-THTGKG 112
           T  G I   LF +D PKT +NF  LC       Y    FHR I  F++Q GD     G G
Sbjct: 18  TKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTG 77

Query: 113 GNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVI 172
           G SI+G KF DE   + KH ++GI+SMAN GPNTN SQFFIT A  + LD K+ +FG+V 
Sbjct: 78  GRSIYGDKFADENF-SRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVA 136

Query: 173 D--GFETLDNLEKLPVNPNH 190
           D   +  +  +E L  +   
Sbjct: 137 DEKSYSVVKEIEALGSSSGS 156

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

 Score =  113 bits (284), Expect = 3e-32
 Identities = 57/138 (41%), Positives = 77/138 (55%), Gaps = 5/138 (3%)

Query: 60  GDIKIELFCEDCPKTCENFLALC---ASDYYNGCIFHRNIKGFIVQTGDPTH-TGKGGNS 115
           G I I LF +  PKT  NF+ L      + Y G  FHR I  F++Q GD T   G GG S
Sbjct: 21  GRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADFMIQGGDFTRGDGTGGRS 80

Query: 116 IWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGF 175
           I+G+KF D     LKH   G +SMAN G +TN SQFFIT      LD ++ +FGK+++G 
Sbjct: 81  IYGEKFAD-ENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGM 139

Query: 176 ETLDNLEKLPVNPNHKPI 193
           + +  +E+    P  +P 
Sbjct: 140 DVVRKIEQTEKLPGDRPK 157

>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]} Length = 172

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

 Score =  112 bits (280), Expect = 9e-32
 Identities = 57/145 (39%), Positives = 82/145 (56%), Gaps = 13/145 (8%)

Query: 60  GDIKIELFCEDCPKTCENFLALCASD----------YYNGCIFHRNIKGFIVQTGDP-TH 108
           G I +EL+ +  PKT  NF ALC  +          ++ G  FHR I  F++Q GD    
Sbjct: 18  GRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRG 77

Query: 109 TGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIF 168
            G GG SI+G+KF DE     KH+  G++SMAN GPNTN SQFF+       LD K+ +F
Sbjct: 78  NGTGGESIYGEKFPDENF-KEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVF 136

Query: 169 GKVIDGFETLDNLEKLPVNPNHKPI 193
           G+V++G + +  +E    + + KP+
Sbjct: 137 GRVVEGLDVVKAVESNG-SQSGKPV 160

>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]} Length = 173

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]

 Score =  109 bits (273), Expect = 1e-30
 Identities = 60/147 (40%), Positives = 82/147 (55%), Gaps = 10/147 (6%)

Query: 60  GDIKIELFCEDCPKTCENFLALCASDY--------YNGCIFHRNIKGFIVQTGDPTHT-G 110
           G +KIELF +  PKT ENF   C  ++        Y G  FHR IK F++Q GD  +  G
Sbjct: 21  GRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDG 80

Query: 111 KGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGK 170
            G  SI+   F DE  +       G++SMAN+GP+TN  QFFIT +    LD K+ +FGK
Sbjct: 81  TGVASIYRGPFADENFKLRHS-APGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGK 139

Query: 171 VIDGFETLDNLEKLPVNPNHKPIFFIT 197
           +IDG   +  +E +P  PN+KP   + 
Sbjct: 140 IIDGLLVMRKIENVPTGPNNKPKLPVV 166

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]} Length = 195

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  109 bits (273), Expect = 2e-30
 Identities = 67/150 (44%), Positives = 83/150 (55%), Gaps = 14/150 (9%)

Query: 60  GDIKIELFCEDCPKTCENFLALCASD-----------YYNGCIFHRNIKGFIVQTGD-PT 107
           G I +ELF +  PKT ENF ALC  +           ++ GC FHR IK F++Q GD   
Sbjct: 29  GRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSN 88

Query: 108 HTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTI 167
             G GG SI+G+KFEDE     KH + G++SMAN G NTN SQFFIT     HLD K+ +
Sbjct: 89  QNGTGGESIYGEKFEDENFH-YKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVV 147

Query: 168 FGKVIDGFETLDNLEKLPVNPNHKPIFFIT 197
           FG+VI G      LE + V    KP     
Sbjct: 148 FGQVIKGMGVAKILENVEVK-GEKPAKLCV 176

>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (263), Expect = 2e-29
 Identities = 74/138 (53%), Positives = 88/138 (63%), Gaps = 1/138 (0%)

Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T  GDI  +LF  +CPKT ENF     + YYNG  FHR IKGF++QTGDPT TG GG SI
Sbjct: 16  TSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESI 75

Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
           WG +FEDEF  TL+H     +SMAN G NTN SQFFIT      LD K+T+FG+V  G E
Sbjct: 76  WGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGME 135

Query: 177 TLDNLEKLPVNP-NHKPI 193
            +  +  + VNP   KP 
Sbjct: 136 VVQRISNVKVNPKTDKPY 153

>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

 Score =  104 bits (259), Expect = 1e-28
 Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 10/141 (7%)

Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T+ GDI I+ F +  P+T +NFL  C   +YN  IFHR I GF++Q G      K     
Sbjct: 6   TNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQKA-- 63

Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYA--------AHAHLDLKYTIF 168
             +  ++E    LK++   +       P++  +QFFI             +     Y +F
Sbjct: 64  TKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVF 123

Query: 169 GKVIDGFETLDNLEKLPVNPN 189
            +V+DG + +D ++ +    +
Sbjct: 124 AEVVDGMDEVDKIKGVATGRS 144

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (259), Expect = 1e-28
 Identities = 59/138 (42%), Positives = 76/138 (55%), Gaps = 6/138 (4%)

Query: 60  GDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGD-PTHTGKGGNS 115
           G + +EL  +  PKT ENF ALC  +    Y G  FHR I  F+ Q GD   H G GG S
Sbjct: 17  GRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKS 76

Query: 116 IWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGF 175
           I+G +F D    TLKH   G++SMAN GPNTN SQFFI       LD K+ +FG VI+G 
Sbjct: 77  IYGSRFPD-ENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGM 135

Query: 176 ETLDNLEKLPVNPNHKPI 193
           + +  +E      + +  
Sbjct: 136 DVVKKIESFGS-KSGRTS 152

>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]} Length = 186

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]

 Score =  101 bits (252), Expect = 2e-27
 Identities = 57/149 (38%), Positives = 75/149 (50%), Gaps = 11/149 (7%)

Query: 60  GDIKIELFCEDCPKTCENFLALCASDY--------YNGCIFHRNIKGFIVQTGDPTHTGK 111
           G  K ELF    PKT ENF   C  +Y        Y   IFHR IK F++Q GD  +   
Sbjct: 31  GKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHNG 90

Query: 112 GGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKV 171
            G+     +  D+    +KH + G++SMAN+GPNTN  QFFIT      LD K  +FG++
Sbjct: 91  SGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRI 150

Query: 172 IDG--FETLDNLEKLPVNP-NHKPIFFIT 197
           ID      L  +E + V P  +KP   I 
Sbjct: 151 IDNDSLLLLKKIENVSVTPYIYKPKIPIN 179

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.0 bits (243), Expect = 2e-26
 Identities = 60/138 (43%), Positives = 81/138 (58%), Gaps = 6/138 (4%)

Query: 60  GDIKIELFCEDCPKTCENFLALCASD---YYNGCIFHRNIKGFIVQTGDPT-HTGKGGNS 115
           G I++ L  +  P T ENF  LC  +    + G  FHR I  F+ Q GD T H G GG S
Sbjct: 16  GRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKS 75

Query: 116 IWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGF 175
           I+GKKF+DE     KH+  G++SMAN+GPNTN SQFF+T      LD K+ +FG+V +G 
Sbjct: 76  IYGKKFDDENFIL-KHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGL 134

Query: 176 ETLDNLEKLPVNPNHKPI 193
           + L  +E    + + KP 
Sbjct: 135 DVLRQIEAQG-SKDGKPK 151

>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

 Score = 92.3 bits (228), Expect = 4e-24
 Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 7/138 (5%)

Query: 57  THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
           T  G+I++EL  +  P + +NF+    S +YN   FHR I GF++Q      T +     
Sbjct: 11  TSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQ--GGGFTEQMQQKK 68

Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDL-----KYTIFGKV 171
                ++E    L+++   I        ++  SQFFI  A +A LD       Y +FGKV
Sbjct: 69  PNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKV 128

Query: 172 IDGFETLDNLEKLPVNPN 189
           + G +  D + ++P +  
Sbjct: 129 VKGMDVADKISQVPTHDV 146

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	232
d2ok3a1	159	Cyclophilin-like protein PPIL3B {Human (Homo sapie	100.0
d2fu0a1	155	Putative cyclophilin PFE0505w {Plasmodium falcipar	100.0
d1zkca1	178	Peptidyl-prolyl cis-trans isomerase-like 2, Cyclop	100.0
d1xwna1	166	Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1	100.0
d2b71a1	169	Cyclophilin-like protein PY00693 {Plasmodium yoeli	100.0
d2igva1	172	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	100.0
d2r99a1	161	Mitochondrial peptidyl-prolyl cis-trans isomerase,	100.0
d1qoia_	173	Cyclophilin (eukaryotic) {Human (Homo sapiens), U4	100.0
d2z6wa1	164	Mitochondrial peptidyl-prolyl cis-trans isomerase,	100.0
d2a2na1	164	Peptidylprolyl isomerase domain and WD repeat-cont	100.0
d1w74a_	171	Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycob	100.0
d1qnga_	170	Cyclophilin (eukaryotic) {Plasmodium falciparum [T	100.0
d1v9ta_	166	Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche	100.0
d1h0pa_	182	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	100.0
d1xo7a_	166	Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId	100.0
d2rmca_	182	Cyclophilin (eukaryotic) {Mouse (Mus musculus), va	100.0
d2cfea1	162	Cyclophilin-like allergen Mal s 6 {Malassezia symp	100.0
d1a33a_	174	Cyclophilin (eukaryotic) {Nematode (Brugia malayi)	100.0
d1ihga2	195	Cyclophilin 40 isomerase domain {Cow (Bos taurus)	100.0
d1z81a1	186	Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId	100.0
d1lopa_	164	Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche	100.0
d2c3ba1	171	Cyclophilin (eukaryotic) {Aspergillus fumigatus [T	100.0
d2fu0a1	155	Putative cyclophilin PFE0505w {Plasmodium falcipar	99.85
d2ok3a1	159	Cyclophilin-like protein PPIL3B {Human (Homo sapie	99.84
d2r99a1	161	Mitochondrial peptidyl-prolyl cis-trans isomerase,	99.83
d2b71a1	169	Cyclophilin-like protein PY00693 {Plasmodium yoeli	99.83
d1zkca1	178	Peptidyl-prolyl cis-trans isomerase-like 2, Cyclop	99.82
d1xwna1	166	Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1	99.82
d1h0pa_	182	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	99.82
d1xo7a_	166	Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId	99.81
d2rmca_	182	Cyclophilin (eukaryotic) {Mouse (Mus musculus), va	99.81
d1qoia_	173	Cyclophilin (eukaryotic) {Human (Homo sapiens), U4	99.81
d2a2na1	164	Peptidylprolyl isomerase domain and WD repeat-cont	99.81
d2igva1	172	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	99.81
d2z6wa1	164	Mitochondrial peptidyl-prolyl cis-trans isomerase,	99.81
d2cfea1	162	Cyclophilin-like allergen Mal s 6 {Malassezia symp	99.8
d1v9ta_	166	Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche	99.79
d1z81a1	186	Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId	99.79
d1qnga_	170	Cyclophilin (eukaryotic) {Plasmodium falciparum [T	99.79
d1lopa_	164	Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche	99.78
d2c3ba1	171	Cyclophilin (eukaryotic) {Aspergillus fumigatus [T	99.74
d1ihga2	195	Cyclophilin 40 isomerase domain {Cow (Bos taurus)	99.66
d1a33a_	174	Cyclophilin (eukaryotic) {Nematode (Brugia malayi)	99.64
d1w74a_	171	Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycob	99.58

>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.8e-46  Score=285.24  Aligned_cols=158  Identities=72%  Similarity=1.182  Sum_probs=141.4

Q ss_pred             CEEEEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhh
Q psy8249           1 MSVSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLA   80 (232)
Q Consensus         1 ~~v~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~   80 (232)
                      |||+|+|++|+|+|+||++.||+||+||++||+.++|+++.|||++++|++|+||+...+.-                  
T Consensus         1 msV~~~T~~G~i~ieL~~~~aP~tv~nF~~L~~~g~Y~~~~f~rv~~~~~iq~Gd~~~~~~~------------------   62 (159)
T d2ok3a1           1 MSVTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRG------------------   62 (159)
T ss_dssp             CEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEECCTTSSSSC------------------
T ss_pred             CEEEEEeCCeEEEEEEcCCCChHHHHHHHHHHhhhcccceeEecccCCeEEEeCCccccCCC------------------
Confidence            99999999999999999999999999999999999999999999999999999996532210                  


Q ss_pred             hccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCC
Q psy8249          81 LCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAH  160 (232)
Q Consensus        81 l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~  160 (232)
                                                      +...++..++.|..+.++|+++|+++|+++++++++|||||++++.|+
T Consensus        63 --------------------------------~~~~~~~~~~~e~~~~~~~~~~G~lsma~~~~~s~~sqFfIt~~~~p~  110 (159)
T d2ok3a1          63 --------------------------------GNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPH  110 (159)
T ss_dssp             --------------------------------CCCTTSSCBCCCCCTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGG
T ss_pred             --------------------------------CcccCCCccccccccCCCCCCCeEEEEeeCCCCCcCcceEeeeccCcc
Confidence                                            011234455666667788999999999999999999999999999999


Q ss_pred             CCCCccEEEEEeeccchhhhcccCCCCC-CCCceeeEEEeeeeecCCCC
Q psy8249         161 LDLKYTIFGKVIDGFETLDNLEKLPVNP-NHKPIFFITYAAHAHLDLKY  208 (232)
Q Consensus       161 ld~~~tvfG~VveG~dvl~~I~~~~~~~-~~~P~~~i~I~~~~~ld~~~  208 (232)
                      ||++|+|||+|++||++|++|+++++++ +++|..+|+|.+|.+|++||
T Consensus       111 ld~~~tvFG~V~~G~~vl~~I~~~~~~~~~~~P~~~i~I~~v~i~~~Pf  159 (159)
T d2ok3a1         111 LDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIHANPF  159 (159)
T ss_dssp             GTTTSCEEEEEEECHHHHHHHHTCCBCTTTCCBSSCCBEEEEEEECCSC
T ss_pred             cccceEEEEecccchHHHHHHHcCcCCCCCCCcCCCcEEEEEEEEeCCC
Confidence            9999999999999999999999999876 57899999999999999986

>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=1.7e-42  Score=265.49  Aligned_cols=151  Identities=49%  Similarity=0.781  Sum_probs=135.9

Q ss_pred             EEEEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhhh
Q psy8249           2 SVSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLAL   81 (232)
Q Consensus         2 ~v~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l   81 (232)
                      +|+|+|++|+|+|+||++.||+||+||++||+++||+++.|||++++|++|+|+++..+..                   
T Consensus         3 ~~~i~T~~G~i~ieL~~~~aP~tv~nF~~l~~~g~Y~g~~f~rv~~~~~iq~Gd~~~~~~~-------------------   63 (155)
T d2fu0a1           3 SAIIYTTMGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPSGDGTG-------------------   63 (155)
T ss_dssp             EEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEECCTTSSSSC-------------------
T ss_pred             eEEEEEcccEEEEEEcCCCChHHHHHHhhHhhCCccccceeeeeeecceeeccCCCCCCcC-------------------
Confidence            5889999999999999999999999999999999999999999999999999997532221                   


Q ss_pred             ccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCCC
Q psy8249          82 CASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHL  161 (232)
Q Consensus        82 ~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~l  161 (232)
                                                     +.+.++..++++..+.+.|.++++++|+++++++++|||||++++.|+|
T Consensus        64 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~sqFfI~~~~~~~l  112 (155)
T d2fu0a1          64 -------------------------------GESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWL  112 (155)
T ss_dssp             -------------------------------CCCTTSSCBCCCCBTTBCSSSSSEEEECCSSTTCBCSCEEEESSCCGGG
T ss_pred             -------------------------------CcccCCCccccccccccccCCccEEEecccCCCCCCccceecccCcccc
Confidence                                           1123355566777778889899999999999999999999999999999


Q ss_pred             CCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeee
Q psy8249         162 DLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHA  202 (232)
Q Consensus       162 d~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~  202 (232)
                      |++|+|||+|++|||+|++|++++++++++|+.+|+|.+|.
T Consensus       113 d~~~tvFG~Vi~G~~vv~~I~~~~t~~~~~P~~~i~I~~v~  153 (155)
T d2fu0a1         113 DFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNIK  153 (155)
T ss_dssp             TTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCCBEEEEE
T ss_pred             ccceEEEEEEeccHHHHHHHHhCCCCCCCCcCCCcEEEEEE
Confidence            99999999999999999999999999999999999999884

>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-42  Score=270.17  Aligned_cols=157  Identities=51%  Similarity=0.923  Sum_probs=140.3

Q ss_pred             EEEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhhhc
Q psy8249           3 VSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALC   82 (232)
Q Consensus         3 v~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~   82 (232)
                      |.|+|++|+|+|+||++.||+||+||++||+.++|+++.|||++++|++|+|++...|..                    
T Consensus         3 v~l~T~~G~i~IeL~~~~aP~tv~nF~~L~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~--------------------   62 (178)
T d1zkca1           3 VRLHTNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPTGTGTG--------------------   62 (178)
T ss_dssp             EEEEETTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEEEEEEETTTEEEECCTTSSSSC--------------------
T ss_pred             EEEEeCCEEEEEEEcCCCChHHHHHHHHHHhcCCcCceEeeeccceeEEecCCccCCCCC--------------------
Confidence            899999999999999999999999999999999999999999999999999997533321                    


Q ss_pred             cCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCCCC
Q psy8249          83 ASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLD  162 (232)
Q Consensus        83 ~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld  162 (232)
                                                    +.+.++..+++|..+.++|+.+|+++|+++++++++|||||+++++++||
T Consensus        63 ------------------------------~~~~~~~~~~~E~~~~l~~~~~G~lsma~~~~~s~~sqF~It~~~~~~ld  112 (178)
T d1zkca1          63 ------------------------------GESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLD  112 (178)
T ss_dssp             ------------------------------CCBTTBSCBCCCCCTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGT
T ss_pred             ------------------------------CcccCCCCcCCccccccCCCCCeEEEEeecCCCCccceeeccccCCcccC
Confidence                                          11223455666766678898999999999999999999999999999999


Q ss_pred             CCccEEEEEeeccchhhhcccCCCCC-CCCceeeEEEeeeeecCCCCc
Q psy8249         163 LKYTIFGKVIDGFETLDNLEKLPVNP-NHKPIFFITYAAHAHLDLKYT  209 (232)
Q Consensus       163 ~~~tvfG~VveG~dvl~~I~~~~~~~-~~~P~~~i~I~~~~~ld~~~~  209 (232)
                      ++|+|||+|++|||+|++|+++++++ +++|..+|+|.+|.+|+++|.
T Consensus       113 ~~~~vFG~Vv~G~dvl~~I~~~~t~~~~~~P~~~v~I~~~~Il~~pf~  160 (178)
T d1zkca1         113 KKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTVFVDPYE  160 (178)
T ss_dssp             TTSCEEEEEEECHHHHHHHHHSCBCTTTCCBSSCCEEEEEEEEECTTH
T ss_pred             CcceEEEEeeCcHHHHHHHHcCCCCCCCCccCCCeEEEEEEEEcCCcc
Confidence            99999999999999999999999874 789999999999999998764

>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-42  Score=265.88  Aligned_cols=150  Identities=45%  Similarity=0.752  Sum_probs=134.6

Q ss_pred             EEEEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhhh
Q psy8249           2 SVSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLAL   81 (232)
Q Consensus         2 ~v~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l   81 (232)
                      .|.|+|++|+|+|+||++.||+||+||++||+.+||+++.|||++++|++|+|+++..|.-                   
T Consensus        13 ~v~~~T~~G~i~ieL~~~~aP~tv~nF~~L~~~g~Y~g~~f~rv~~~~~iq~Gd~~~~~~~-------------------   73 (166)
T d1xwna1          13 NVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRG-------------------   73 (166)
T ss_dssp             EEEEEESSCEEEEEECTTTCHHHHHHHHHHHHHTSSTTCCEEEEETTTEEEECCSTTTTSS-------------------
T ss_pred             EEEEEECceeEEEEEcCCCChHHHHHHHHHHhcCCcCceeeeEEcccEEEEeCCCCCCCCC-------------------
Confidence            6899999999999999999999999999999999999999999999999999997643321                   


Q ss_pred             ccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCCC
Q psy8249          82 CASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHL  161 (232)
Q Consensus        82 ~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~l  161 (232)
                                                     +.+.++..+++|..+.+.|+.+|+++|+++++++++|||||++++.++|
T Consensus        74 -------------------------------~~~~~~~~~~~e~~~~~~~~~~G~lsm~~~~~~s~~sqFfI~~~~~~~l  122 (166)
T d1xwna1          74 -------------------------------GASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWL  122 (166)
T ss_dssp             -------------------------------CCCSSCSCCCCCCCTTCCSCSSSEEEEEEEETTEEEEEEEEECSCCSTT
T ss_pred             -------------------------------CccCCCCccccccCCCCCCCCCeEEEecccCCCCCCcceEEeecChhhc
Confidence                                           1122344566676667888899999999999999999999999999999


Q ss_pred             CCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeee
Q psy8249         162 DLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAH  201 (232)
Q Consensus       162 d~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~  201 (232)
                      |++|+|||+|++|||+|++|++++++++++|..+|+|..+
T Consensus       123 d~~~tvFG~Vi~G~dvl~~I~~~~t~~~~~P~~~I~I~~a  162 (166)
T d1xwna1         123 DGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKA  162 (166)
T ss_dssp             TTTSEEEEECSSCHHHHHHHHHSCBCSSSCBSSCCCEEEE
T ss_pred             cccceEEEEEechHHHHHHHHhCCCCCCCCCCCCeEEEEe
Confidence            9999999999999999999999999999999999999865

>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]

Probab=100.00  E-value=1.2e-41  Score=264.20  Aligned_cols=151  Identities=46%  Similarity=0.808  Sum_probs=133.5

Q ss_pred             EEEEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhhh
Q psy8249           2 SVSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLAL   81 (232)
Q Consensus         2 ~v~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l   81 (232)
                      -|.|+|++|+|+|+||++.||+||+||++||+.+||+++.|||++++|++|+|++...+.-                   
T Consensus        18 ~V~l~T~~G~i~IeL~~d~aP~tv~nF~~L~~~g~Y~~~~f~rv~~~~~iq~g~~~~~~~~-------------------   78 (169)
T d2b71a1          18 YITIYTNLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQGGDPTGTGKG-------------------   78 (169)
T ss_dssp             EEEEEETTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEEEEEEETTTEEEEEETTSSSSC-------------------
T ss_pred             EEEEEeCceeEEEEEeCCCCcHHHHHHHHHhhCCccceeeeccccceeeEeccccccccCC-------------------
Confidence            3889999999999999999999999999999999999999999999999999987533221                   


Q ss_pred             ccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCCC
Q psy8249          82 CASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHL  161 (232)
Q Consensus        82 ~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~l  161 (232)
                                                     +.+.....++.|....++|.++|+++|+++++++++|||||++++.|+|
T Consensus        79 -------------------------------~~~~~~~~~~~e~~~~l~h~~~g~ls~~~~~p~s~~sqFfIt~~~~~~l  127 (169)
T d2b71a1          79 -------------------------------GKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHL  127 (169)
T ss_dssp             -------------------------------CCBTTBSCBCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGG
T ss_pred             -------------------------------CccccccccccccccccCCCCcEEEEhhhCCCCCCCCEEEEecCCcchh
Confidence                                           0111233445565667889899999999999999999999999999999


Q ss_pred             CCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeee
Q psy8249         162 DLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHA  202 (232)
Q Consensus       162 d~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~  202 (232)
                      |++|+|||+|++|||+|++|++++++++++|..+|+|.++.
T Consensus       128 d~~~tvFG~Vv~G~dvl~~I~~~~~~~~~~P~~~i~I~~~~  168 (169)
T d2b71a1         128 DGKHTIFARVSKNMTCIENIASVQTTATNKPIFDLKILRTS  168 (169)
T ss_dssp             TTTSCEEEEEEECHHHHHHHHTSCBCTTCCBSSCCEEEEEE
T ss_pred             hhhcceeeEEeccHHHHHHHHhCCCCCCCCCCCCeEEEEcc
Confidence            99999999999999999999999999999999999998874

>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

Probab=100.00  E-value=1.4e-39  Score=253.27  Aligned_cols=154  Identities=39%  Similarity=0.640  Sum_probs=127.3

Q ss_pred             CEEEE-EeCCeeEEEEeecCCCchhHHhHHHhhhc----------CcccceeeeeecceeEEeeCCCccccccceecccc
Q psy8249           1 MSVSL-HTDVGDIKIELFCEDCPKTCENFLALCAS----------DYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCE   69 (232)
Q Consensus         1 ~~v~~-~t~~G~i~i~L~~~~~p~~~~nf~~l~~~----------~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~   69 (232)
                      |.|.| .|++|+|+|+||.+.||+||+||++||+.          ++|+++.|||++++|++|+|++...          
T Consensus         8 ~Di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~~~~k~~~y~~~~f~rv~~~~~i~~G~~~~~----------   77 (172)
T d2igva1           8 FDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRG----------   77 (172)
T ss_dssp             EEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTS----------
T ss_pred             EEEEECCEeccEEEEEEcCCCCcHHHHHHHHHHhccccccccCcccccCCcceeEEEecceEEcCCccCC----------
Confidence            34555 47799999999999999999999999964          5888888888888888888875421          


Q ss_pred             CCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccc
Q psy8249          70 DCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNAS  149 (232)
Q Consensus        70 ~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s  149 (232)
                                                             .+.++...++..+++|.. ...|+.+|+++|+++++++++|
T Consensus        78 ---------------------------------------~~~~~~~~~~~~~~~e~~-~~~~~~~G~lsma~~~~~~~~s  117 (172)
T d2igva1          78 ---------------------------------------NGTGGESIYGEKFPDENF-KEKHTGPGVLSMANAGPNTNGS  117 (172)
T ss_dssp             ---------------------------------------SSSCCCBTTBSCBCCCCC-CSCCCSTTEEEECCSSTTCBSS
T ss_pred             ---------------------------------------CCCCCcccCCCccCcccc-ccccCCCcEEEEeecCCCCcCc
Confidence                                                   011122233445566655 4567789999999999999999


Q ss_pred             eEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecC
Q psy8249         150 QFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLD  205 (232)
Q Consensus       150 ~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld  205 (232)
                      ||||+++++|+||++|+|||+|++|||+|++|++.++ ++++|+.+|+|.+||+|.
T Consensus       118 qFfIt~~~~~~ld~~~~vFG~Vv~Gmdvl~~I~~~~~-~~g~P~~~i~I~~cG~l~  172 (172)
T d2igva1         118 QFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGS-QSGKPVKDCMIADCGQLK  172 (172)
T ss_dssp             CEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCC-TTSCCSSCEEEEEEEEEC
T ss_pred             eeEeeecCCcccCCceeEEEEEeccHHHHHHHHcCCC-CCCCCCCCeEEEeccccC
Confidence            9999999999999999999999999999999998765 489999999999999984

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-39  Score=250.10  Aligned_cols=152  Identities=40%  Similarity=0.645  Sum_probs=126.0

Q ss_pred             CEEEE-EeCCeeEEEEeecCCCchhHHhHHHhhh---cCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcch
Q psy8249           1 MSVSL-HTDVGDIKIELFCEDCPKTCENFLALCA---SDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCE   76 (232)
Q Consensus         1 ~~v~~-~t~~G~i~i~L~~~~~p~~~~nf~~l~~---~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~   76 (232)
                      |+|.+ .+++|+|+|+||.+.||+||+||++||+   .++|+++.|||++++|++|+|+.+..+..              
T Consensus         6 ~di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~Y~g~~f~Rv~~~~~iq~G~~~~~~~~--------------   71 (161)
T d2r99a1           6 MDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGT--------------   71 (161)
T ss_dssp             EEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSS--------------
T ss_pred             EEEEECCEeceEEEEEEcCCCCcHHHHHHHHhhhhccccccCCcEEEEEEEeeeEEeeeccCCCCC--------------
Confidence            45666 5678999999999999999999999994   46899999999999999999997632110              


Q ss_pred             hhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeecc
Q psy8249          77 NFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYA  156 (232)
Q Consensus        77 ~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~  156 (232)
                                                         +..+.++....++ ...++|+.+|+++|+++++++++|||||+++
T Consensus        72 -----------------------------------~~~~~~~~~~~~~-~~~~~~~~~G~ls~~~~~~~s~~sqFfI~~~  115 (161)
T d2r99a1          72 -----------------------------------GGKSIYGKKFDDE-NFILKHTGPGLLSMANSGPNTNGSQFFLTCD  115 (161)
T ss_dssp             -----------------------------------CCCBTTBSCBCCC-CCCSCCCSSSEEEECCSSTTCBCSCEEEESS
T ss_pred             -----------------------------------CCccccCcccccc-ccccccccceeeeecccCCCCcCcceEeccC
Confidence                                               0011112222233 3366788999999999999999999999999


Q ss_pred             CCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeee
Q psy8249         157 AHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAH  203 (232)
Q Consensus       157 ~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~  203 (232)
                      +.|+||++|+|||+|++|||+|++|+..+ +++++|+.+|+|.+||+
T Consensus       116 ~~~~Ldg~~tvFG~Vv~G~dvl~~I~~~~-~~~~~P~~~i~I~~CGe  161 (161)
T d2r99a1         116 KTDWLDGKHVVFGEVTEGLDVLRQIEAQG-SKDGKPKQKVIIADCGE  161 (161)
T ss_dssp             CCGGGTTTSCEEEEEEECHHHHHHHHTTC-CTTCCCSSCEEEEEEEE
T ss_pred             CccccCCcceEEEEEeehHHHHHHHHccC-CCCCcCCCCEEEEeCCC
Confidence            99999999999999999999999998765 45899999999999984

>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]

Probab=100.00  E-value=1e-39  Score=254.33  Aligned_cols=153  Identities=42%  Similarity=0.743  Sum_probs=126.8

Q ss_pred             EEEE-EeCCeeEEEEeecCCCchhHHhHHHhhhcCc--------ccceeeeeecceeEEeeCCCccccccceeccccCCC
Q psy8249           2 SVSL-HTDVGDIKIELFCEDCPKTCENFLALCASDY--------YNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCP   72 (232)
Q Consensus         2 ~v~~-~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~--------y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P   72 (232)
                      .|.+ .|++|+|+|+||++.||+||+||++||+.+|        |+++.|||++++|++|+|+.+.....          
T Consensus        12 di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~~~~~~y~~~~f~rv~~~~~~q~G~~~~~~~~----------   81 (173)
T d1qoia_          12 DVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGT----------   81 (173)
T ss_dssp             EEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHSCCEETTEECSSTTCBCCEEETTTEEEECCTTTSSSC----------
T ss_pred             EEEECCEeCeEEEEEEcCCCCcHHHHHHHHhhcccccccCCCCCcCCcccceeccceeeccCCcccCCcc----------
Confidence            3444 4568999999999999999999999999998        89999999999999999986521100          


Q ss_pred             CcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEE
Q psy8249          73 KTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFF  152 (232)
Q Consensus        73 ~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~  152 (232)
                                                             .........+.++.. ...++.+|+++|+++++++++||||
T Consensus        82 ---------------------------------------~~~~~~~~~~~~~~~-~~~~~~~G~l~ma~~~~~s~~sqFf  121 (173)
T d1qoia_          82 ---------------------------------------GVASIYRGPFADENF-KLRHSAPGLLSMANSGPSTNGCQFF  121 (173)
T ss_dssp             ---------------------------------------CCCCTTSSCBCCCCC-CSCCCSTTEEEECCSSTTCBCSCEE
T ss_pred             ---------------------------------------eeecccCCccccccc-ccccCCCcEEEeeecCCCCCCceee
Confidence                                                   000011222333333 3466689999999999999999999


Q ss_pred             eeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeec
Q psy8249         153 ITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHL  204 (232)
Q Consensus       153 itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~l  204 (232)
                      |++++.|+||++|+|||+|++|||+|++|++++++++++|+.+|+|.+||+|
T Consensus       122 I~~~~~~~ldg~~tvFG~Vi~G~dvl~~I~~~~t~~~~~P~~~i~I~~cGel  173 (173)
T d1qoia_         122 ITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM  173 (173)
T ss_dssp             EESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSCEEEEEEEEC
T ss_pred             eeccCCccCCcceeEEEEEechHHHHHHHHhCCcCCCCcCCCCEEEEcccCC
Confidence            9999999999999999999999999999999999999999999999999986

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-39  Score=251.06  Aligned_cols=154  Identities=40%  Similarity=0.649  Sum_probs=127.3

Q ss_pred             CEEEE-EeCCeeEEEEeecCCCchhHHhHHHhhhcC---cccceeeeeecceeEEeeCCCccccccceeccccCCCCcch
Q psy8249           1 MSVSL-HTDVGDIKIELFCEDCPKTCENFLALCASD---YYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCE   76 (232)
Q Consensus         1 ~~v~~-~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~---~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~   76 (232)
                      |+|.+ .+++|+|+|+||++.||+||+||++||..+   +|+++.|||++++|++|+|+.+.....              
T Consensus         7 ~Di~i~~~~~G~i~ieL~~~~aP~tv~nF~~l~~~~~~~~Y~g~~f~rv~~~~~iq~g~~~~~~~~--------------   72 (164)
T d2z6wa1           7 LDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGT--------------   72 (164)
T ss_dssp             EEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSS--------------
T ss_pred             EEEEECCEeceEEEEEECCCcCcHHHHHHHHHHhcCCCcccCCcEEEEecccceEecCCccCCCCC--------------
Confidence            34444 345899999999999999999999999766   799999999999999999997632110              


Q ss_pred             hhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeecc
Q psy8249          77 NFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYA  156 (232)
Q Consensus        77 ~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~  156 (232)
                                                         ++.+.++..++++.. .+.|+.+|+++|++.++++++|||||++.
T Consensus        73 -----------------------------------~~~~~~~~~~~~~~~-~~~~~~~G~lsma~~~~~s~~sqFfi~~~  116 (164)
T d2z6wa1          73 -----------------------------------GGKSIYGSRFPDENF-TLKHVGPGVLSMANAGPNTNGSQFFICTI  116 (164)
T ss_dssp             -----------------------------------CCCBTTBSCBCCCCC-CSCCCSTTEEEECCSSTTCBCSCEEEESS
T ss_pred             -----------------------------------CCccccCCcCCcccc-ccccCCccEEEEecCCCCCCCcceecccc
Confidence                                               001112233333333 45667899999999999999999999999


Q ss_pred             CCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecC
Q psy8249         157 AHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLD  205 (232)
Q Consensus       157 ~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld  205 (232)
                      ++|+||++|+|||+|++|||+|++|++++++ +++|..+|+|.+||+|.
T Consensus       117 ~~~~ldg~ytVFG~Vv~G~dvl~~I~~~~~~-~~~P~~~i~I~~cG~l~  164 (164)
T d2z6wa1         117 KTDWLDGKHVVFGHVIEGMDVVKKIESFGSK-SGRTSKKIVITDCGQLS  164 (164)
T ss_dssp             CCGGGTTTSCEEEEEEECHHHHHHHHHTCCT-TSCCSSCEEEEEEEECC
T ss_pred             CCCcccccceEEEEecccHHHHHHHHhCCCC-CCCCCCCEEEEeCeecC
Confidence            9999999999999999999999999999876 78999999999999984

>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-39  Score=250.04  Aligned_cols=153  Identities=49%  Similarity=0.785  Sum_probs=131.9

Q ss_pred             CEEEEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhh
Q psy8249           1 MSVSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLA   80 (232)
Q Consensus         1 ~~v~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~   80 (232)
                      .+|+|+|++|+|+|+||.+.||+||+||++||+.++|+++.|||++++|++|+|++...+.-                  
T Consensus        10 ~~a~~~T~~G~i~ieL~~~~aP~tv~nF~~l~~~g~Y~g~~f~rv~~~~~iq~G~~~~~~~~------------------   71 (164)
T d2a2na1          10 DSAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMG------------------   71 (164)
T ss_dssp             SEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEECCTTSSSSC------------------
T ss_pred             CEEEEEeceeEEEEEEcCCCChHHHHHHHHHHhCCCcccceeeEEeeeeeEeecccccccCC------------------
Confidence            36899999999999999999999999999999999999999999999999999986421100                  


Q ss_pred             hccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCC
Q psy8249          81 LCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAH  160 (232)
Q Consensus        81 l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~  160 (232)
                                                      +.......++.+....+.|+.+++++|++.++++++|||||++++.|+
T Consensus        72 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~sqFfI~~~~~~~  119 (164)
T d2a2na1          72 --------------------------------GESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPW  119 (164)
T ss_dssp             --------------------------------CCCTTSSCBCCCCCTTCCSCSSSEEEECCSSTTCBCSCEEEESSCCGG
T ss_pred             --------------------------------CceeeecccccccccccccCccceeehhhcCCCCCcccceecccCccc
Confidence                                            000012234455556788889999999999999999999999999999


Q ss_pred             CCCCccEEEEEeeccchhhhcccCCCCC-CCCceeeEEEeeeee
Q psy8249         161 LDLKYTIFGKVIDGFETLDNLEKLPVNP-NHKPIFFITYAAHAH  203 (232)
Q Consensus       161 ld~~~tvfG~VveG~dvl~~I~~~~~~~-~~~P~~~i~I~~~~~  203 (232)
                      ||++|+|||+|++|||+|++|++++++. +++|..+|+|.++.+
T Consensus       120 ld~~~tVFG~V~~G~dvv~~I~~~~~~~~~~~P~~~V~I~~v~i  163 (164)
T d2a2na1         120 LDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITV  163 (164)
T ss_dssp             GTTTSCEEEEEEECHHHHHHHHTSCBCTTTCCBSSCCBEEEEEE
T ss_pred             cccceeEEEEecChHHHHHHHHcCCcCCCCCCcCCCcEEEEEEE
Confidence            9999999999999999999999999985 589999999998864

>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=3.4e-39  Score=250.91  Aligned_cols=163  Identities=39%  Similarity=0.663  Sum_probs=133.2

Q ss_pred             EEEEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhhh
Q psy8249           2 SVSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLAL   81 (232)
Q Consensus         2 ~v~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l   81 (232)
                      +++|+|++|+|+|+||++.||+||+||++||+.+.+.++.+++.                                   -
T Consensus         5 ~~ti~T~~G~I~ieL~~d~aP~tv~nF~~L~~~~~~~~~~~~~~-----------------------------------~   49 (171)
T d1w74a_           5 TATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASG-----------------------------------G   49 (171)
T ss_dssp             EEEEEETTEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTB-----------------------------------S
T ss_pred             EEEEEECCEEEEEEEcCCCChHHHHHHHHHHhcCCccccccccc-----------------------------------c
Confidence            58899999999999999999999999999999885444322210                                   0


Q ss_pred             ccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCCC
Q psy8249          82 CASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHL  161 (232)
Q Consensus        82 ~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~l  161 (232)
                      ....+|+++.|||+.+++++|+|++...+.++.   ...++.|..+.++|+++|+++|++.++++++|||||++++.|+|
T Consensus        50 ~~~~~Y~g~~~~rv~~~~~iq~g~~~~~~~~~~---~~~~~~e~~~~~~~~~~g~v~~~~~~~~s~~sqFfIt~~~~p~l  126 (171)
T d1w74a_          50 PSGPFYDGAVFHRVIQGFMIQGGDPTGTGRGGP---GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHL  126 (171)
T ss_dssp             SSSCSSTTEEEEEEETTTEEEECCTTSSSSCCS---SCCBCCCCCTTCCSCSSSEEEECCSSTTCBSSCEEEESSCCGGG
T ss_pred             ccCceECCeecccccCCceeEcccccCCCCCCc---ccccccccCCCcCCCCCEEEEEEecCCCCCCcceEeeccCCCcc
Confidence            123456777777777777777776654433332   23456676778899999999999999999999999999999999


Q ss_pred             CCCccEEEEEe--eccchhhhcccCCCCCCCCceeeEEEeeee
Q psy8249         162 DLKYTIFGKVI--DGFETLDNLEKLPVNPNHKPIFFITYAAHA  202 (232)
Q Consensus       162 d~~~tvfG~Vv--eG~dvl~~I~~~~~~~~~~P~~~i~I~~~~  202 (232)
                      |++|+|||+|+  ||||||++|++++++++++|+.+|+|.++.
T Consensus       127 d~~~tVFG~Vv~geGmdvl~~I~~~~~~~~~~P~~~i~I~~v~  169 (171)
T d1w74a_         127 NRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIESIT  169 (171)
T ss_dssp             TTTSCEEEEECSHHHHHHHHHHHTSCBCTTSCBSSCCEEEEEE
T ss_pred             ccccEEEEEEeccccHHHHHHHHcCCcCCCCccCCCcEEEEEE
Confidence            99999999999  599999999999999999999999999875

>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=2.3e-39  Score=251.53  Aligned_cols=153  Identities=42%  Similarity=0.690  Sum_probs=126.7

Q ss_pred             CEEEE-EeCCeeEEEEeecCCCchhHHhHHHhhh---------cCcccceeeeeecceeEEeeCCCccccccceeccccC
Q psy8249           1 MSVSL-HTDVGDIKIELFCEDCPKTCENFLALCA---------SDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCED   70 (232)
Q Consensus         1 ~~v~~-~t~~G~i~i~L~~~~~p~~~~nf~~l~~---------~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~   70 (232)
                      |.|.| .|++|+|+|+||++.||+||+||++||+         .++|+++.|||++++|++|+|+......         
T Consensus         8 ~Di~i~~t~~G~ivIeL~~~~aP~tv~nF~~l~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~g~~~~~~~---------   78 (170)
T d1qnga_           8 FDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNG---------   78 (170)
T ss_dssp             EEEEESSSEEEEEEEEECTTTCHHHHHHHHHHHHTCEECTTSSEECCTTCBCCEEETTTEEEECCTTTSSS---------
T ss_pred             EEEEECCEEccEEEEEECCCCChHHHHHHHhhhccccccccCccCccCcccceEEEeCceEEecCccCCCC---------
Confidence            45666 5899999999999999999999999997         4578889999999999999888542110         


Q ss_pred             CCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccce
Q psy8249          71 CPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQ  150 (232)
Q Consensus        71 ~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~  150 (232)
                                                              .+....++..++++.. .+.|+.+|+++|++.++++++||
T Consensus        79 ----------------------------------------~~~~~~~~~~~~~~~~-~~~~~~~G~lsma~~~~~s~~sq  117 (170)
T d1qnga_          79 ----------------------------------------SGGESIYGRSFTDENF-NMKHDQPGLLSMANAGPNTNSSQ  117 (170)
T ss_dssp             ----------------------------------------SCCCBTTBSCBCCCCC-CSCCCSTTEEEECCSSTTCBCSC
T ss_pred             ----------------------------------------CCCcccCCCccccccc-cccCCCCeEEEEeecCCCCcccc
Confidence                                                    0011122333444433 56788999999999999999999


Q ss_pred             EEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeec
Q psy8249         151 FFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHL  204 (232)
Q Consensus       151 f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~l  204 (232)
                      |||+++++|+||++|+|||+|++|||+|++|++.+++ +++|..+|+|.+||+|
T Consensus       118 FfIt~~~~~~Ld~~~~vFG~Vv~Gmdvl~~I~~~~~~-~g~P~~~i~I~~CG~l  170 (170)
T d1qnga_         118 FFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAK-SGYVKRSVVITDCGEL  170 (170)
T ss_dssp             EEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TCCCSSCEEEEEEEEC
T ss_pred             ceeccCCcccccccccEEeEEeccHHHHHHHHhcCCC-CcCCccCEEEEeeEcC
Confidence            9999999999999999999999999999999998776 6899999999999986

>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.3e-39  Score=250.64  Aligned_cols=150  Identities=31%  Similarity=0.529  Sum_probs=127.9

Q ss_pred             EEEEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhhh
Q psy8249           2 SVSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLAL   81 (232)
Q Consensus         2 ~v~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l   81 (232)
                      .|.|+|++|+|+|+||++.||+||+||++||+.+||+++.|||++++|++|+|++......                   
T Consensus         6 ~V~l~T~~G~i~ieL~~~~aP~tv~nF~~L~~~~~Y~g~~fhRv~~~~~iq~G~~~~~~~~-------------------   66 (166)
T d1v9ta_           6 HVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQ-------------------   66 (166)
T ss_dssp             EEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBEEEEETTTEEEESSBCTTCCB-------------------
T ss_pred             EEEEEECCeeEEEEEeCCCChHHHHHHHHHhhCCccccceeeEEEEEeecccCCcCCcccc-------------------
Confidence            5899999999999999999999999999999999999999999999999999986421100                   


Q ss_pred             ccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecc-cCCCcccceEEeeccCCCC
Q psy8249          82 CASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMAN-NGPNTNASQFFITYAAHAH  160 (232)
Q Consensus        82 ~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~-~~~~~~~s~f~itl~~~~~  160 (232)
                                                       ..++..+++|..+.+.| .+|.++|++ .++++++|||||++++.++
T Consensus        67 ---------------------------------~~~~~~~~~e~~~~~~~-~rg~v~~~~~~~~~s~~sqFfI~~~~~~~  112 (166)
T d1v9ta_          67 ---------------------------------KKPNPPIKNEADNGLRN-TRGTIAMARTADKDSATSQFFINVADNAF  112 (166)
T ss_dssp             ---------------------------------CCCCCCBCCCGGGSCCC-CTTEEEECCCSSTTCBCSCEEEESSCCGG
T ss_pred             ---------------------------------cCCCCCccccccccccc-cCCEEEEEeeecCCCcccccccccCCccc
Confidence                                             01133455676656665 789999987 5589999999999999999


Q ss_pred             CCCC-----ccEEEEEeeccchhhhcccCCCCCC----CCceeeEEEeeeeec
Q psy8249         161 LDLK-----YTIFGKVIDGFETLDNLEKLPVNPN----HKPIFFITYAAHAHL  204 (232)
Q Consensus       161 ld~~-----~tvfG~VveG~dvl~~I~~~~~~~~----~~P~~~i~I~~~~~l  204 (232)
                      ||+.     |+|||+|++|||+|++|+++++++.    ++|+.+|+|.+|++|
T Consensus       113 ld~~~~~~~~tvfG~VveG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~~~~vl  165 (166)
T d1v9ta_         113 LDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSATVL  165 (166)
T ss_dssp             GSCCSSCCCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEESSCCBEEEEEEC
T ss_pred             cccccccCCEEEeeEEeccHHHHHHHHhCcccCCCCCCCccCCCeEEEEEEEc
Confidence            8864     8999999999999999999988763    489999999999987

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

Probab=100.00  E-value=2e-39  Score=254.46  Aligned_cols=156  Identities=39%  Similarity=0.649  Sum_probs=131.5

Q ss_pred             CEEEE-EeCCeeEEEEeecCCCchhHHhHHHhhhcC---cccceeeeeecceeEEeeCCCccccccceeccccCCCCcch
Q psy8249           1 MSVSL-HTDVGDIKIELFCEDCPKTCENFLALCASD---YYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCE   76 (232)
Q Consensus         1 ~~v~~-~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~---~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~   76 (232)
                      |.|.+ .|++|+|+|+||.+.||+||+||++||+.+   +|+++.|||++++|++|+|+.+..-                
T Consensus        11 ~di~i~~~~~G~i~IeL~~d~aP~tv~nF~~l~~~g~~~~y~g~~f~rv~~~~~iq~G~~~~~~----------------   74 (182)
T d1h0pa_          11 FDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADFMIQGGDFTRGD----------------   74 (182)
T ss_dssp             EEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHSCTTTSSTTCBCCEEETTTEEEECCTTTSS----------------
T ss_pred             EEEEECCEECeEEEEEECCCCChHHHHHHHHHHHhcccCCcCCceEEEEEecceEEcCCCCCCC----------------
Confidence            44555 588999999999999999999999999665   8999999999999999999865210                


Q ss_pred             hhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeecc
Q psy8249          77 NFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYA  156 (232)
Q Consensus        77 ~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~  156 (232)
                                                       +.++.+.++..+.++.. ...|+.+|+++|++.++++++|||||+++
T Consensus        75 ---------------------------------~~g~~~~~~~~~~~~~~-~~~~~~~G~~~~a~~g~~s~~sqFfIt~~  120 (182)
T d1h0pa_          75 ---------------------------------GTGGRSIYGEKFADENF-KLKHYGAGWLSMANAGADTNGSQFFITTV  120 (182)
T ss_dssp             ---------------------------------SSCCCBTTBSCBCCCCC-CSCCCSTTEEEECCSSTTCBCSCEEEESS
T ss_pred             ---------------------------------CCCCCCCCCCccCcccc-cccccCCceeeecccCCCCcCcccccccc
Confidence                                             00111222333334433 55677899999999999999999999999


Q ss_pred             CCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCC
Q psy8249         157 AHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDL  206 (232)
Q Consensus       157 ~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~  206 (232)
                      +.|+||++|+|||+|++|||+|++|++.+++++++|..+|+|.+|++|..
T Consensus       121 ~~~~ldg~ytvFG~Vi~G~dvl~~I~~~~~~~~~~P~~~v~I~~cG~l~~  170 (182)
T d1h0pa_         121 KTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHIAV  170 (182)
T ss_dssp             CCGGGTTTSCEEEEEEECHHHHHHHHTSCEETTTEESSCEEEEEEEEEEE
T ss_pred             ccccccccceeEEEEeehHHHHHHHHhcCCCCCCCCCCCEEEEECCeEeC
Confidence            99999999999999999999999999999999999999999999998874

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=3.5e-39  Score=249.57  Aligned_cols=152  Identities=40%  Similarity=0.663  Sum_probs=127.2

Q ss_pred             EEEE-EeCCeeEEEEeecCCCchhHHhHHHhhhcCc---ccceeeeeecceeEEeeCCCccccccceeccccCCCCcchh
Q psy8249           2 SVSL-HTDVGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCEN   77 (232)
Q Consensus         2 ~v~~-~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~---y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~   77 (232)
                      .|.+ .+++|+|+|+||.+.||++++||++||+.++   |+++.|||++++|++|+|+.+.....               
T Consensus        11 di~i~~~~~G~i~ieL~~~~aP~t~~nF~~l~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~---------------   75 (166)
T d1xo7a_          11 DITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNFMIQGGDFTNFDGT---------------   75 (166)
T ss_dssp             EEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSS---------------
T ss_pred             EEEECCEECcEEEEEECCCCChHHHHHHHHhhcccccccccCcEEEEEcCCCEEEeCCCCCCCCC---------------
Confidence            3444 4789999999999999999999999999998   99999999999999999986532100               


Q ss_pred             hhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccC
Q psy8249          78 FLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAA  157 (232)
Q Consensus        78 F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~  157 (232)
                                                        +....++..++.+.  ...++.+|+++|+++++++++|||||++++
T Consensus        76 ----------------------------------~~~~~~~~~~~~~~--~~~~~~~G~l~~a~~g~~s~~sqFfIt~~~  119 (166)
T d1xo7a_          76 ----------------------------------GGKSIYGTRFDDEN--LKIKHFVGAVSMANAGPNSNGSQFFVTTAP  119 (166)
T ss_dssp             ----------------------------------CCCBTTBSCBCCCC--CCSCCCTTEEEECCSSTTCBCSCEEEESSC
T ss_pred             ----------------------------------CCCCCCCccccccc--ccccccccceeecccCCCCCCCeeEEccCC
Confidence                                              00011112222222  234557999999999999999999999999


Q ss_pred             CCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeec
Q psy8249         158 HAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHL  204 (232)
Q Consensus       158 ~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~l  204 (232)
                      +|+||++|+|||+|++|||+|++|++.+++.+++|..+|+|.+|++|
T Consensus       120 ~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I~~cgvl  166 (166)
T d1xo7a_         120 TPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCGVL  166 (166)
T ss_dssp             CGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSCEEEEEEEEC
T ss_pred             ccccCccceeeeEEeeHHHHHHHHHcCCCCCCCCCCCCEEEEeeEeC
Confidence            99999999999999999999999999999999999999999999986

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

Probab=100.00  E-value=5.9e-39  Score=251.74  Aligned_cols=151  Identities=45%  Similarity=0.689  Sum_probs=129.1

Q ss_pred             EeCCeeEEEEeecCCCchhHHhHHHhhhcC---cccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhhhc
Q psy8249           6 HTDVGDIKIELFCEDCPKTCENFLALCASD---YYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALC   82 (232)
Q Consensus         6 ~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~---~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~   82 (232)
                      .|++|+|+|+||.+.||+||+||++||+++   +|+++.|||++++|++|+|+.+.....                    
T Consensus        18 ~~~~G~ivieL~~d~aP~tv~nF~~l~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~--------------------   77 (182)
T d2rmca_          18 DKDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFMIQGGDFTARDGT--------------------   77 (182)
T ss_dssp             TEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCSSTTCBEEEEETTTEEEECCCSSSSSS--------------------
T ss_pred             CEECcEEEEEEcCCCCcHHHHHHHHhhhcCCCccccCceeeeeecCceEEcCCCCCCCCC--------------------
Confidence            388999999999999999999999999666   699999999999999999996522100                    


Q ss_pred             cCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCCCC
Q psy8249          83 ASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLD  162 (232)
Q Consensus        83 ~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld  162 (232)
                                                   ++.+.++..++++.. .+.|+.+|+++|++.++++++|||||++++.++||
T Consensus        78 -----------------------------~~~~~~~~~~~~~~~-~~~~~~~G~lsma~~~~~s~~sqFfI~~~~~~~ld  127 (182)
T d2rmca_          78 -----------------------------GGMSIYGETFPDENF-KLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLD  127 (182)
T ss_dssp             -----------------------------CCCBTTBSCBCCCCC-CSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGT
T ss_pred             -----------------------------CCCCCcCCccccccc-ccccCCCccEehhhcCCCccCccccccccCCchhc
Confidence                                         011122333444433 45677899999999999999999999999999999


Q ss_pred             CCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCC
Q psy8249         163 LKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDL  206 (232)
Q Consensus       163 ~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~  206 (232)
                      ++|+|||+|++|||+|++|++.+++.+++|..+|+|.+|+.|+.
T Consensus       128 ~~~~vFG~Vi~G~dvl~~I~~~~~~~~~~P~~~v~I~~~g~l~~  171 (182)
T d2rmca_         128 GKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVNSGKIDV  171 (182)
T ss_dssp             TTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEEEEEEEE
T ss_pred             ccceEEEEEechHHHHHHHHhCCcCCCCcCCCCeEEEEeeEEeC
Confidence            99999999999999999999999999999999999999999974

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

Probab=100.00  E-value=8.3e-39  Score=246.41  Aligned_cols=151  Identities=44%  Similarity=0.667  Sum_probs=125.6

Q ss_pred             EEEE-EeCCeeEEEEeecCCCchhHHhHHHhhhcCc---ccceeeeeecceeEEeeCCCccccccceeccccCCCCcchh
Q psy8249           2 SVSL-HTDVGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCEN   77 (232)
Q Consensus         2 ~v~~-~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~---y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~   77 (232)
                      .|.+ .|++|+|+|+||++.||+|++||++||+.++   |+++.|||++++|++|+|+++....                
T Consensus         7 Di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~----------------   70 (162)
T d2cfea1           7 DITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFMLQGGDFTAGNG----------------   70 (162)
T ss_dssp             EEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBCCEEETTTEEEECCTTTSSS----------------
T ss_pred             EEEECCEEeeEEEEEEcCCCChHHHHHHHHHHhhccCCccCCCEEEEEEecceEecCCCCCCCC----------------
Confidence            3444 3568999999999999999999999999996   9999999999999999999652210                


Q ss_pred             hhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccC
Q psy8249          78 FLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAA  157 (232)
Q Consensus        78 F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~  157 (232)
                                                       .++.+.+...+.+|.. .++|+.+|+++|++.++++++|||||++++
T Consensus        71 ---------------------------------~~~~~~~~~~~~~e~~-~~~h~~~G~vsm~~~~~~s~~sqF~I~~~~  116 (162)
T d2cfea1          71 ---------------------------------TGGKSIYGAKFADENF-QLKHNKPGLLSMANAGPNTNGSQFFITTVV  116 (162)
T ss_dssp             ---------------------------------SCCCBTTBSCBCCCCC-CSCCCSTTEEEECCSSTTCBSSCEEEESSC
T ss_pred             ---------------------------------CCCcccCCCccccccC-CCCCCCceEEEEeecCCCCCCcceEEeecC
Confidence                                             0001112233444433 578889999999999999999999999999


Q ss_pred             CCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeee
Q psy8249         158 HAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAH  203 (232)
Q Consensus       158 ~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~  203 (232)
                      .|+||++|+|||+|++|||||++|+..+ +++++|..+|+|.+|++
T Consensus       117 ~~~ld~~~~vFG~Vi~G~dvl~~I~~~~-~~~~~P~~~i~I~~cgv  161 (162)
T d2cfea1         117 TSWLDGKHVVFGEVIDGMNVVKAIEAEG-SGSGKPRSRIEIAKCGV  161 (162)
T ss_dssp             CGGGTTTSCEEEEEEECHHHHHHHHTTC-CTTSCCSSCEEEEEEEE
T ss_pred             CccccccceEEEEEEehHHHHHHHhcCC-CCCCCCCCCeEEEeeEc
Confidence            9999999999999999999999998765 55899999999999986

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

Probab=100.00  E-value=2.6e-38  Score=246.53  Aligned_cols=153  Identities=42%  Similarity=0.697  Sum_probs=124.7

Q ss_pred             EEEEE-eCCeeEEEEeecCCCchhHHhHHHhhhc-----------CcccceeeeeecceeEEeeCCCccccccceecccc
Q psy8249           2 SVSLH-TDVGDIKIELFCEDCPKTCENFLALCAS-----------DYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCE   69 (232)
Q Consensus         2 ~v~~~-t~~G~i~i~L~~~~~p~~~~nf~~l~~~-----------~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~   69 (232)
                      +|.|. ++.|+|+|+||++.||++|+||++||+.           ++|+++.|||++++|++|+|+......        
T Consensus         9 di~i~~~~~G~I~ieL~~d~aP~tv~nF~~l~~~~~~~~~~~~k~~~Y~~~~f~Rv~~~~~iq~g~~~~~~~--------   80 (174)
T d1a33a_           9 DVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDG--------   80 (174)
T ss_dssp             EEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCCCTTCBEEEEETTTEEEECCTTTSSS--------
T ss_pred             EEEECCEeceEEEEEECCCCChHHHHHHHHHHhcccCCCcccCccceeCCceeeEEEeCCEEeeCCCCCCCC--------
Confidence            44442 3479999999999999999999999965           468888888888888888887542110        


Q ss_pred             CCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccc
Q psy8249          70 DCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNAS  149 (232)
Q Consensus        70 ~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s  149 (232)
                                                               .+..+.+.... .+......|+.+|+++|++.++++++|
T Consensus        81 -----------------------------------------~~~~~~~~~~~-~~~~~~~~~~~~g~l~~~~~~~~s~~s  118 (174)
T d1a33a_          81 -----------------------------------------TGGESIYGGMF-DDEEFVMKHDEPFVVSMANKGPNTNGS  118 (174)
T ss_dssp             -----------------------------------------SCCCCTTSSCB-CCCCSCSCCCSTTEEEECCSSTTCBCS
T ss_pred             -----------------------------------------CCCCCccCccc-cccccccccCcceeeeeeccCCCCCCc
Confidence                                                     01111122222 333446788899999999999999999


Q ss_pred             eEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeec
Q psy8249         150 QFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHL  204 (232)
Q Consensus       150 ~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~l  204 (232)
                      ||||++++.|+||++|+|||+|++|||||++|++++++.+++|..+|+|.+||+|
T Consensus       119 qFfI~~~~~p~ld~~~~vFG~VveG~dvl~~I~~~~t~~~~~P~~~i~I~~cGel  173 (174)
T d1a33a_         119 QFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL  173 (174)
T ss_dssp             CEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEEEEEC
T ss_pred             ccccccCCcccccccceeEEEEechHHHHHHHHhCCcCCCCCCCCCEEEEeeEEE
Confidence            9999999999999999999999999999999999999999999999999999986

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.5e-38  Score=251.98  Aligned_cols=169  Identities=44%  Similarity=0.687  Sum_probs=133.4

Q ss_pred             EEEE-EeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhh
Q psy8249           2 SVSL-HTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLA   80 (232)
Q Consensus         2 ~v~~-~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~   80 (232)
                      +|.+ .+++|+|+|+||.+.||+||+||++||+.++|.+..++|                                    
T Consensus        20 Di~i~~~~~G~I~IeL~~d~aP~tv~nF~~L~~~~~~~~~~~~~------------------------------------   63 (195)
T d1ihga2          20 DVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGK------------------------------------   63 (195)
T ss_dssp             EEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSS------------------------------------
T ss_pred             EEEECCEeeeEEEEEECCCCChHHHHHHHHHhccccccccccCC------------------------------------
Confidence            4444 456899999999999999999999999977665544332                                    


Q ss_pred             hccCCCCCCceeEEeecCcEEEcCCCCC-CCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCCC
Q psy8249          81 LCASDYYNGCIFHRNIKGFIVQTGDPTH-TGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHA  159 (232)
Q Consensus        81 l~~~~~y~g~~~~rv~~~~~vq~G~~~~-~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~  159 (232)
                         ..+|+++.|||+++++++|+|+... .+.+....++..+.++.. .+.|+.+|+++|++.++++++|||||++++.|
T Consensus        64 ---~~~y~g~~f~rv~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~G~lsm~~~~~~s~~SqFfItl~~~~  139 (195)
T d1ihga2          64 ---PLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENF-HYKHDKEGLLSMANAGSNTNGSQFFITTVPTP  139 (195)
T ss_dssp             ---BSCCTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCCC-CBCCCSTTEEEECCSSTTCBCSCEEEESSCCG
T ss_pred             ---ccccCCceeeEEEcCceeecCCccCCCCCCCccCCCCccccccc-CcccCcceEEeeeecCCCCCCceeEeeccCCc
Confidence               1346666666666666666665442 223333444555666655 56788999999999999999999999999999


Q ss_pred             CCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCC--CCccc
Q psy8249         160 HLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDL--KYTIF  211 (232)
Q Consensus       160 ~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~--~~~~f  211 (232)
                      +||++|+|||+|++|||+|++|++.+++ +++|..+|+|.+||+|..  +|.+|
T Consensus       140 ~LDg~ytVFG~Vv~Gmdvl~~I~~~~t~-~~~P~~~i~I~~cG~l~~~~~~~~~  192 (195)
T d1ihga2         140 HLDGKHVVFGQVIKGMGVAKILENVEVK-GEKPAKLCVIAECGELKEGDDWGIF  192 (195)
T ss_dssp             GGTTTSCEEEEEEECHHHHHHHHTSCEE-TTEESSCEEEEEEEEECTTCCCCCS
T ss_pred             ccCCcceEEEEEecCHHHHHHHHcCCCC-CCCcCCCeEEEECcccCCCCcCCCC
Confidence            9999999999999999999999998876 789999999999999987  34444

>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]

Probab=100.00  E-value=2.4e-38  Score=249.03  Aligned_cols=153  Identities=42%  Similarity=0.705  Sum_probs=127.2

Q ss_pred             EEEE-EeCCeeEEEEeecCCCchhHHhHHHhhhcCc--------ccceeeeeecceeEEeeCCCccccccceeccccCCC
Q psy8249           2 SVSL-HTDVGDIKIELFCEDCPKTCENFLALCASDY--------YNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCP   72 (232)
Q Consensus         2 ~v~~-~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~--------y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P   72 (232)
                      +|.+ .+++|+|+|+||.+.||+||+||++||+.++        |+++.|||++++|++|+|+.......          
T Consensus        22 di~i~~~~~G~I~ieL~~d~aP~tv~nF~~L~~~~~~~~~~~~~Y~g~~f~rv~~~~~i~~G~~~~~~~~----------   91 (186)
T d1z81a1          22 DINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHNGS----------   91 (186)
T ss_dssp             EEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSSSSBCSSTTEECCEEETTTEEEECCTTTSSSC----------
T ss_pred             EEEECCEeceEEEEEEcCCCChHHHHHHHHHHhcccccCCcccccCCCeeeeeecceeeecCCccccCCc----------
Confidence            4444 4567999999999999999999999999998        99999999999999999986421100          


Q ss_pred             CcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEE
Q psy8249          73 KTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFF  152 (232)
Q Consensus        73 ~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~  152 (232)
                                                             ......+..++++.. .+.|+.+|+++|++.++++++||||
T Consensus        92 ---------------------------------------~~~~~~~~~~~~~~~-~~~~~~~G~~~~~~~g~~~~~sqFf  131 (186)
T d1z81a1          92 ---------------------------------------GSLSIYGEKFDDENF-DIKHDKEGLLSMANSGPNTNGCQFF  131 (186)
T ss_dssp             ---------------------------------------CCCBTTBSCCCCCCC-CSCCCSTTEEEECCSSSSCCCSCEE
T ss_pred             ---------------------------------------ccccccCCccccccc-ccccCCCccchhhhcCCCcccccee
Confidence                                                   000112223333433 5678899999999999999999999


Q ss_pred             eeccCCCCCCCCccEEEEEeec--cchhhhcccCCCCC-CCCceeeEEEeeeeec
Q psy8249         153 ITYAAHAHLDLKYTIFGKVIDG--FETLDNLEKLPVNP-NHKPIFFITYAAHAHL  204 (232)
Q Consensus       153 itl~~~~~ld~~~tvfG~VveG--~dvl~~I~~~~~~~-~~~P~~~i~I~~~~~l  204 (232)
                      |++++.|+||++|+|||+|++|  ||+|++|++.++++ .++|..+|+|.+||+|
T Consensus       132 It~~~~p~Ldg~~tVFG~Vv~G~~mdvv~kI~~~~~~~~~~~P~~~i~I~~CGel  186 (186)
T d1z81a1         132 ITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL  186 (186)
T ss_dssp             EESSCCGGGBTTBCEEEEECSHHHHHHHHHHHHSCBCTTTCCBSSCEEEEEEEEC
T ss_pred             eecccccccCCCccEEEEEEeCccHHHHHHHhccCCCCCCCccCCCEEEEeCCcC
Confidence            9999999999999999999998  99999999999875 7899999999999986

>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.2e-38  Score=244.60  Aligned_cols=150  Identities=29%  Similarity=0.544  Sum_probs=125.3

Q ss_pred             EEEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhhhc
Q psy8249           3 VSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALC   82 (232)
Q Consensus         3 v~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~   82 (232)
                      |+|+|++|+|+|+||++.||+|++||++||+.+||+++.|||++++|++|+|+++....-                    
T Consensus         2 V~l~T~~G~i~ieL~~~~aP~t~~nF~~l~~~g~Y~g~~fhrv~~~~~iq~G~~~~~~~~--------------------   61 (164)
T d1lopa_           2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQ--------------------   61 (164)
T ss_dssp             EEEEETTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEECCEEETTTEEEESSEETTTEE--------------------
T ss_pred             EEEEeCCeEEEEEEcCCCCHHHHHHHHHHHHccCcCCceeeEEcCCceeeeeccccCCcC--------------------
Confidence            899999999999999999999999999999999999999999999999999986421100                    


Q ss_pred             cCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEeccc-CCCcccceEEeeccCC---
Q psy8249          83 ASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANN-GPNTNASQFFITYAAH---  158 (232)
Q Consensus        83 ~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~-~~~~~~s~f~itl~~~---  158 (232)
                                                      ...+..+++|....++| .+|.++|+++ ++++++|||||++.+.   
T Consensus        62 --------------------------------~~~~~~~~~e~~~~~~h-~~g~l~~~~~~~~~~~~sqFfi~~~~~~~~  108 (164)
T d1lopa_          62 --------------------------------KATKEPIKNEANNGLKN-TRGTLAMARTQAPHSATAQFFINVVDNDFL  108 (164)
T ss_dssp             --------------------------------CCCCCCBCCCCCSSCCC-CTTEEEECCCSSTTCBCSCEEEESSCCGGG
T ss_pred             --------------------------------CccCCCccccccccccc-eeeEEEEeccCCCCCccceeeeeccccccc
Confidence                                            00122344555545566 6788888864 6899999999999764   


Q ss_pred             -----CCCCCCccEEEEEeeccchhhhcccCCCCCCC----CceeeEEEeeeeecC
Q psy8249         159 -----AHLDLKYTIFGKVIDGFETLDNLEKLPVNPNH----KPIFFITYAAHAHLD  205 (232)
Q Consensus       159 -----~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~----~P~~~i~I~~~~~ld  205 (232)
                           |++|++|+|||+|++|||+|++|+++++++.+    +|+.+|+|.++.++|
T Consensus       109 ~~~~~~~~~~~ytvFG~Vv~G~dvl~~I~~~~t~~~~~~~~~P~~~v~I~~v~I~e  164 (164)
T d1lopa_         109 NFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVIIESVTVSE  164 (164)
T ss_dssp             SCCSSSTTTSCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEESSCCEEEEEEECC
T ss_pred             cccCCCcCCCceeecCEEeccHHHHHHHHhCCcCCCCCcCCCcCCCeEEEEEEEeC
Confidence                 78999999999999999999999999987654    899999999887654

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

Probab=100.00  E-value=3.9e-38  Score=244.68  Aligned_cols=150  Identities=41%  Similarity=0.634  Sum_probs=111.1

Q ss_pred             EEeCCeeEEEEeecCCCchhHHhHHHhhhcCc---ccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhhh
Q psy8249           5 LHTDVGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLAL   81 (232)
Q Consensus         5 ~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~---y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l   81 (232)
                      .+|++|+|+|+||++.||+||+||++||+.++   |+++.|||++++|++|+|+.......                   
T Consensus        16 ~~T~~G~i~IeL~~~~aP~tv~nF~~l~~~~~~~~y~~~~f~ri~~~~~iq~G~~~~~~~~-------------------   76 (171)
T d2c3ba1          16 AETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGT-------------------   76 (171)
T ss_dssp             SCCEEEEEEEEECTTTSHHHHHHHHHHHHSCTTTSSTTCBCCEEETTTEEEECC--------------------------
T ss_pred             ccceeeEEEEEEcCCCChHHHHHHHHHhhhcccccccCceeeEEEEEEeeEcCCccCCCCC-------------------
Confidence            37899999999999999999999999999988   88999999999999999996521100                   


Q ss_pred             ccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCCC
Q psy8249          82 CASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHL  161 (232)
Q Consensus        82 ~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~l  161 (232)
                        +                            ..+..+..+.++ ...+.|+.+|+++|+++++++++|||||++++.|+|
T Consensus        77 --~----------------------------~~~~~~~~~~~~-~~~~~~~~~G~lsma~~~~~s~~sqFfI~~~~~~~l  125 (171)
T d2c3ba1          77 --G----------------------------GRSIYGDKFADE-NFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWL  125 (171)
T ss_dssp             ----------------------------------------------CHHHHHTCEEEEC---------CEEEECSCCTTC
T ss_pred             --C----------------------------CCcCCCCccccc-cccccCCCCceEEeeecCCCCCCcceeeccCCcccc
Confidence              0                            000111122222 335677789999999999999999999999999999


Q ss_pred             CCCccEEEEEee--ccchhhhcccCCCCC-CCCceeeEEEeeeeec
Q psy8249         162 DLKYTIFGKVID--GFETLDNLEKLPVNP-NHKPIFFITYAAHAHL  204 (232)
Q Consensus       162 d~~~tvfG~Vve--G~dvl~~I~~~~~~~-~~~P~~~i~I~~~~~l  204 (232)
                      |++|+|||+|++  |||+|++|+++++++ ..+|..+|.|.+||+|
T Consensus       126 dg~~tvFG~Vie~~G~dvl~~I~~~~t~~g~~~p~~~v~I~~cGel  171 (171)
T d2c3ba1         126 DGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL  171 (171)
T ss_dssp             CSCCEEEEEECSHHHHHHHHHHHTTCCTTSCCCSSSCCEEEEEEEC
T ss_pred             CCCceEEEEEEeccCHHHHHHHHcCCCCCCCcCCCCCEEEEeCccC
Confidence            999999999995  999999999998876 4478999999999986

>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.85  E-value=6.1e-22  Score=150.34  Aligned_cols=132  Identities=36%  Similarity=0.589  Sum_probs=92.8

Q ss_pred             ccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccce
Q psy8249          57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGI  136 (232)
Q Consensus        57 t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~  136 (232)
                      |+.|+++++||++.+|++++||++||++++|+++.|||+++++++|+|++...     ...+.....+..          
T Consensus         8 T~~G~i~ieL~~~~aP~tv~nF~~l~~~g~Y~g~~f~rv~~~~~iq~Gd~~~~-----~~~~~~~~~~~~----------   72 (155)
T d2fu0a1           8 TTMGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPSGD-----GTGGESIWGNEF----------   72 (155)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEECCTTSS-----SSCCCCTTSSCB----------
T ss_pred             EcccEEEEEEcCCCChHHHHHHhhHhhCCccccceeeeeeecceeeccCCCCC-----CcCCcccCCCcc----------
Confidence            89999999999999999999999999999999999999999999999987531     100100000000          


Q ss_pred             EEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCcccceeec
Q psy8249         137 VSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYTIFGKVID  216 (232)
Q Consensus       137 v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~~fg~V~~  216 (232)
                             ++..       ....++..+ . +   +        +++.... ..+...++|...++++||+.|++||+|++
T Consensus        73 -------~~~~-------~~~~~~~~~-~-~---~--------~~~~~~~-~s~~sqFfI~~~~~~~ld~~~tvFG~Vi~  124 (155)
T d2fu0a1          73 -------EDEF-------FDHLNHSKP-F-M---V--------SMANCGP-NTNGSQFFITTVPCPWLDFKHTVFGKVTQ  124 (155)
T ss_dssp             -------CCCC-------BTTBCSSSS-S-E---E--------EECCSST-TCBCSCEEEESSCCGGGTTTSCEEEEEEE
T ss_pred             -------cccc-------ccccccCCc-c-E---E--------EecccCC-CCCCccceecccCccccccceEEEEEEec
Confidence                   0000       000011111 0 0   0        1112111 23445689999999999999999999999


Q ss_pred             chhhhhhhccCcCCC
Q psy8249         217 GLETLDNLEKLPVNP  231 (232)
Q Consensus       217 g~~v~~~i~~~~~~~  231 (232)
                      |||||++|++++++.
T Consensus       125 G~~vv~~I~~~~t~~  139 (155)
T d2fu0a1         125 GSKIVLDIEKVRTDK  139 (155)
T ss_dssp             CHHHHHHHHTSCBCT
T ss_pred             cHHHHHHHHhCCCCC
Confidence            999999999999865

>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.7e-22  Score=152.90  Aligned_cols=132  Identities=62%  Similarity=1.002  Sum_probs=92.7

Q ss_pred             ccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccce
Q psy8249          57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGI  136 (232)
Q Consensus        57 t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~  136 (232)
                      |+.|+++++|+++.+|++++||++||++++|+++.|||+++++++|+|++...   .  ..+........          
T Consensus         7 T~~G~i~ieL~~~~aP~tv~nF~~L~~~g~Y~~~~f~rv~~~~~iq~Gd~~~~---~--~~~~~~~~~~~----------   71 (159)
T d2ok3a1           7 TDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGT---G--RGGNSIWGKKF----------   71 (159)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEECCTTSS---S--SCCCCTTSSCB----------
T ss_pred             eCCeEEEEEEcCCCChHHHHHHHHHHhhhcccceeEecccCCeEEEeCCcccc---C--CCCcccCCCcc----------
Confidence            78999999999999999999999999999999999999999999999986421   0  00000000000          


Q ss_pred             EEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCcccceeec
Q psy8249         137 VSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYTIFGKVID  216 (232)
Q Consensus       137 v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~~fg~V~~  216 (232)
                             +...          .+.+  +|..-|.|        ++++...+ .+...++|+..++++||+.|++||+|++
T Consensus        72 -------~~e~----------~~~~--~~~~~G~l--------sma~~~~~-s~~sqFfIt~~~~p~ld~~~tvFG~V~~  123 (159)
T d2ok3a1          72 -------EDEY----------SEYL--KHNVRGVV--------SMANNGPN-TNGSQFFITYGKQPHLDMKYTVFGKVID  123 (159)
T ss_dssp             -------CCCC----------CTTC--CSCSTTEE--------EECCSSTT-CBCSCEEEESSCCGGGTTTSCEEEEEEE
T ss_pred             -------cccc----------ccCC--CCCCCeEE--------EEeeCCCC-CcCcceEeeeccCcccccceEEEEeccc
Confidence                   0000          0000  11111222        12222222 3345688999999999999999999999


Q ss_pred             chhhhhhhccCcCCC
Q psy8249         217 GLETLDNLEKLPVNP  231 (232)
Q Consensus       217 g~~v~~~i~~~~~~~  231 (232)
                      |||||++|+++++++
T Consensus       124 G~~vl~~I~~~~~~~  138 (159)
T d2ok3a1         124 GLETLDELEKLPVNE  138 (159)
T ss_dssp             CHHHHHHHHTCCBCT
T ss_pred             chHHHHHHHcCcCCC
Confidence            999999999999865

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.2e-21  Score=148.09  Aligned_cols=141  Identities=29%  Similarity=0.435  Sum_probs=98.1

Q ss_pred             ceeEEeeCCCccccccceeccccCCCCcchhhhhhccC---CCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcc
Q psy8249          47 KGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCAS---DYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFED  123 (232)
Q Consensus        47 ~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~~---~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~  123 (232)
                      .-||...-+.+..|+++|+||.+.+|++++||++||..   ++|+++.|||+++++++|+|++...  .+.   +.   .
T Consensus         3 ~vy~di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~Y~g~~f~Rv~~~~~iq~G~~~~~--~~~---~~---~   74 (161)
T d2r99a1           3 QVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNH--NGT---GG---K   74 (161)
T ss_dssp             EEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTS--SSS---CC---C
T ss_pred             EEEEEEEECCEeceEEEEEEcCCCCcHHHHHHHHhhhhccccccCCcEEEEEEEeeeEEeeeccCC--CCC---CC---c
Confidence            34677777788899999999999999999999999954   6899999999999999999987641  000   00   0


Q ss_pred             cccccccccccceEEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeee
Q psy8249         124 EFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAH  203 (232)
Q Consensus       124 e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~  203 (232)
                      ...        +     .        .+     +.......+..-|.|        ++.+... ......++|+..++++
T Consensus        75 ~~~--------~-----~--------~~-----~~~~~~~~~~~~G~l--------s~~~~~~-~s~~sqFfI~~~~~~~  119 (161)
T d2r99a1          75 SIY--------G-----K--------KF-----DDENFILKHTGPGLL--------SMANSGP-NTNGSQFFLTCDKTDW  119 (161)
T ss_dssp             BTT--------B-----S--------CB-----CCCCCCSCCCSSSEE--------EECCSST-TCBCSCEEEESSCCGG
T ss_pred             ccc--------C-----c--------cc-----cccccccccccceee--------eecccCC-CCcCcceEeccCCccc
Confidence            000        0     0        00     001111122222333        1222222 2344568999999999


Q ss_pred             cCCCCcccceeecchhhhhhhccCcCC
Q psy8249         204 LDLKYTIFGKVIDGLETLDNLEKLPVN  230 (232)
Q Consensus       204 ld~~~~~fg~V~~g~~v~~~i~~~~~~  230 (232)
                      ||+.|++||+|++|||||+||+..++.
T Consensus       120 Ldg~~tvFG~Vv~G~dvl~~I~~~~~~  146 (161)
T d2r99a1         120 LDGKHVVFGEVTEGLDVLRQIEAQGSK  146 (161)
T ss_dssp             GTTTSCEEEEEEECHHHHHHHHTTCCT
T ss_pred             cCCcceEEEEEeehHHHHHHHHccCCC
Confidence            999999999999999999999877653

>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]

Probab=99.83  E-value=1.9e-21  Score=149.59  Aligned_cols=132  Identities=36%  Similarity=0.617  Sum_probs=92.6

Q ss_pred             ccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccce
Q psy8249          57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGI  136 (232)
Q Consensus        57 t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~  136 (232)
                      |+.|+++|+|+++.+|++++||++||+.++|+++.|||+++++++|+|++...   ..  .+.....+   .....    
T Consensus        23 T~~G~i~IeL~~d~aP~tv~nF~~L~~~g~Y~~~~f~rv~~~~~iq~g~~~~~---~~--~~~~~~~~---~~~~e----   90 (169)
T d2b71a1          23 TNLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQGGDPTGT---GK--GGKSIYGE---YFEDE----   90 (169)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEEEEEEETTTEEEEEETTSS---SS--CCCBTTBS---CBCCC----
T ss_pred             eCceeEEEEEeCCCCcHHHHHHHHHhhCCccceeeeccccceeeEeccccccc---cC--CCcccccc---ccccc----
Confidence            88999999999999999999999999999999999999999999999986531   00  00000000   00000    


Q ss_pred             EEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCcccceeec
Q psy8249         137 VSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYTIFGKVID  216 (232)
Q Consensus       137 v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~~fg~V~~  216 (232)
                                ..       ...+|..+     |.|        ++.+...+ .+...++|...++++||+.|++||+|++
T Consensus        91 ----------~~-------~~l~h~~~-----g~l--------s~~~~~p~-s~~sqFfIt~~~~~~ld~~~tvFG~Vv~  139 (169)
T d2b71a1          91 ----------IN-------KELKHTGA-----GIL--------SMSNNGPN-TNSSQFFITLAPLPHLDGKHTIFARVSK  139 (169)
T ss_dssp             ----------CC-------TTCCCCST-----TEE--------EECCSSTT-CBSSCEEEESSCCGGGTTTSCEEEEEEE
T ss_pred             ----------cc-------cccCCCCc-----EEE--------EhhhCCCC-CCCCEEEEecCCcchhhhhcceeeEEec
Confidence                      00       00111111     111        11222222 3334688999999999999999999999


Q ss_pred             chhhhhhhccCcCCC
Q psy8249         217 GLETLDNLEKLPVNP  231 (232)
Q Consensus       217 g~~v~~~i~~~~~~~  231 (232)
                      ||||||+|+++++++
T Consensus       140 G~dvl~~I~~~~~~~  154 (169)
T d2b71a1         140 NMTCIENIASVQTTA  154 (169)
T ss_dssp             CHHHHHHHHTSCBCT
T ss_pred             cHHHHHHHHhCCCCC
Confidence            999999999999875

>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.8e-21  Score=150.89  Aligned_cols=132  Identities=40%  Similarity=0.764  Sum_probs=93.2

Q ss_pred             ccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccce
Q psy8249          57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGI  136 (232)
Q Consensus        57 t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~  136 (232)
                      |+.|+++|+||.+.+|++++||++||+.++|+++.|||+.+++++|+|++..+   +.   +..  .......       
T Consensus         7 T~~G~i~IeL~~~~aP~tv~nF~~L~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~---~~---~~~--~~~~~~~-------   71 (178)
T d1zkca1           7 TNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPTGT---GT---GGE--SYWGKPF-------   71 (178)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEEEEEEETTTEEEECCTTSS---SS---CCC--BTTBSCB-------
T ss_pred             eCCEEEEEEEcCCCChHHHHHHHHHHhcCCcCceEeeeccceeEEecCCccCC---CC---CCc--ccCCCCc-------
Confidence            88999999999999999999999999999999999999999999999986421   11   000  0000000       


Q ss_pred             EEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCcccceeec
Q psy8249         137 VSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYTIFGKVID  216 (232)
Q Consensus       137 v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~~fg~V~~  216 (232)
                             +            +...-+..|..-|.|.        +.+...+ .....++|.+.++++||+.|++||+|++
T Consensus        72 -------~------------~E~~~~l~~~~~G~ls--------ma~~~~~-s~~sqF~It~~~~~~ld~~~~vFG~Vv~  123 (178)
T d1zkca1          72 -------K------------DEFRPNLSHTGRGILS--------MANSGPN-SNRSQFFITFRSCAYLDKKHTIFGRVVG  123 (178)
T ss_dssp             -------C------------CCCCTTCCSCSTTEEE--------ECCSSTT-CBCSCEEEESSCCGGGTTTSCEEEEEEE
T ss_pred             -------C------------CccccccCCCCCeEEE--------EeecCCC-CccceeeccccCCcccCCcceEEEEeeC
Confidence                   0            0000011122223331        1222212 3334689999999999999999999999


Q ss_pred             chhhhhhhccCcCCC
Q psy8249         217 GLETLDNLEKLPVNP  231 (232)
Q Consensus       217 g~~v~~~i~~~~~~~  231 (232)
                      |||||++|+++++|+
T Consensus       124 G~dvl~~I~~~~t~~  138 (178)
T d1zkca1         124 GFDVLTAMENVESDP  138 (178)
T ss_dssp             CHHHHHHHHHSCBCT
T ss_pred             cHHHHHHHHcCCCCC
Confidence            999999999998863

>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.3e-21  Score=150.09  Aligned_cols=133  Identities=34%  Similarity=0.527  Sum_probs=92.5

Q ss_pred             ccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccce
Q psy8249          57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGI  136 (232)
Q Consensus        57 t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~  136 (232)
                      |+.|+++|+||++.+|++++||++||+.++|+++.|||+++++++|+|++...   +.  .+.....+..   ..     
T Consensus        18 T~~G~i~ieL~~~~aP~tv~nF~~L~~~g~Y~g~~f~rv~~~~~iq~Gd~~~~---~~--~~~~~~~~~~---~~-----   84 (166)
T d1xwna1          18 TSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGT---GR--GGASIYGKQF---ED-----   84 (166)
T ss_dssp             ESSCEEEEEECTTTCHHHHHHHHHHHHHTSSTTCCEEEEETTTEEEECCSTTT---TS--SCCCSSCSCC---CC-----
T ss_pred             ECceeEEEEEcCCCChHHHHHHHHHHhcCCcCceeeeEEcccEEEEeCCCCCC---CC--CCccCCCCcc---cc-----
Confidence            78899999999999999999999999999999999999999999999986531   10  0100000000   00     


Q ss_pred             EEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCcccceeec
Q psy8249         137 VSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYTIFGKVID  216 (232)
Q Consensus       137 v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~~fg~V~~  216 (232)
                               ...       ...++ +.    -|.|.        +.+... ......++|.+.++++||+.|++||+|++
T Consensus        85 ---------e~~-------~~~~~-~~----~G~ls--------m~~~~~-~s~~sqFfI~~~~~~~ld~~~tvFG~Vi~  134 (166)
T d1xwna1          85 ---------ELH-------PDLKF-TG----AGILA--------MANAGP-DTNGSQFFVTLAPTQWLDGKHTIFGRVCQ  134 (166)
T ss_dssp             ---------CCC-------TTCCS-CS----SSEEE--------EEEEET-TEEEEEEEEECSCCSTTTTTSEEEEECSS
T ss_pred             ---------ccC-------CCCCC-CC----CeEEE--------ecccCC-CCCCcceEEeecChhhccccceEEEEEec
Confidence                     000       00011 11    11111        111111 12345689999999999999999999999


Q ss_pred             chhhhhhhccCcCCCC
Q psy8249         217 GLETLDNLEKLPVNPN  232 (232)
Q Consensus       217 g~~v~~~i~~~~~~~~  232 (232)
                      |||||++|++++++.+
T Consensus       135 G~dvl~~I~~~~t~~~  150 (166)
T d1xwna1         135 GIGMVNRVGMVETNSQ  150 (166)
T ss_dssp             CHHHHHHHHHSCBCSS
T ss_pred             hHHHHHHHHhCCCCCC
Confidence            9999999999998653

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

Probab=99.82  E-value=2.8e-21  Score=150.37  Aligned_cols=141  Identities=30%  Similarity=0.473  Sum_probs=97.3

Q ss_pred             eeEEeeCCCccccccceeccccCCCCcchhhhhhccCC---CCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCccc
Q psy8249          48 GFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASD---YYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDE  124 (232)
Q Consensus        48 ~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~~~---~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e  124 (232)
                      .||..+-+.++.|+++++||.+.+|++++||++||+++   +|+++.|||+++++++|+|+..    .+.   +      
T Consensus         9 vy~di~i~~~~~G~i~IeL~~d~aP~tv~nF~~l~~~g~~~~y~g~~f~rv~~~~~iq~G~~~----~~~---~------   75 (182)
T d1h0pa_           9 VYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADFMIQGGDFT----RGD---G------   75 (182)
T ss_dssp             EEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHSCTTTSSTTCBCCEEETTTEEEECCTT----TSS---S------
T ss_pred             EEEEEEECCEECeEEEEEECCCCChHHHHHHHHHHHhcccCCcCCceEEEEEecceEEcCCCC----CCC---C------
Confidence            47777777899999999999999999999999999654   8999999999999999998743    000   0      


Q ss_pred             ccccccccccceEEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeec
Q psy8249         125 FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHL  204 (232)
Q Consensus       125 ~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~l  204 (232)
                               .|-.+....       .|    .+ ......+..-|.+.        +.+.. ...+...++|+..++++|
T Consensus        76 ---------~g~~~~~~~-------~~----~~-~~~~~~~~~~G~~~--------~a~~g-~~s~~sqFfIt~~~~~~l  125 (182)
T d1h0pa_          76 ---------TGGRSIYGE-------KF----AD-ENFKLKHYGAGWLS--------MANAG-ADTNGSQFFITTVKTPWL  125 (182)
T ss_dssp             ---------SCCCBTTBS-------CB----CC-CCCCSCCCSTTEEE--------ECCSS-TTCBCSCEEEESSCCGGG
T ss_pred             ---------CCCCCCCCC-------cc----Cc-ccccccccCCceee--------ecccC-CCCcCccccccccccccc
Confidence                     000000000       00    00 00000011112221        22211 234556689999999999


Q ss_pred             CCCCcccceeecchhhhhhhccCcCCC
Q psy8249         205 DLKYTIFGKVIDGLETLDNLEKLPVNP  231 (232)
Q Consensus       205 d~~~~~fg~V~~g~~v~~~i~~~~~~~  231 (232)
                      |+.|++||+|++|||||++|++.++++
T Consensus       126 dg~ytvFG~Vi~G~dvl~~I~~~~~~~  152 (182)
T d1h0pa_         126 DGRHVVFGKILEGMDVVRKIEQTEKLP  152 (182)
T ss_dssp             TTTSCEEEEEEECHHHHHHHHTSCEET
T ss_pred             cccceeEEEEeehHHHHHHHHhcCCCC
Confidence            999999999999999999999998864

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.81  E-value=8.8e-21  Score=145.43  Aligned_cols=140  Identities=32%  Similarity=0.536  Sum_probs=97.8

Q ss_pred             eeEEeeCCCccccccceeccccCCCCcchhhhhhccCCC---CCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCccc
Q psy8249          48 GFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDE  124 (232)
Q Consensus        48 ~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~---y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e  124 (232)
                      .||...-+.+..|+++++|+.+.+|++++||++||++++   |+++.|||+.+++++|+|+....  .+.   +..  ..
T Consensus         8 V~~di~i~~~~~G~i~ieL~~~~aP~t~~nF~~l~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~--~~~---~~~--~~   80 (166)
T d1xo7a_           8 VYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNFMIQGGDFTNF--DGT---GGK--SI   80 (166)
T ss_dssp             EEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTS--SSS---CCC--BT
T ss_pred             EEEEEEECCEECcEEEEEECCCCChHHHHHHHHhhcccccccccCcEEEEEcCCCEEEeCCCCCC--CCC---CCC--CC
Confidence            466666667889999999999999999999999999987   99999999999999999986531  000   000  00


Q ss_pred             ccccccccccceEEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeec
Q psy8249         125 FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHL  204 (232)
Q Consensus       125 ~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~l  204 (232)
                      .. . ..            +...        ....+      .-|.|.        ++.... ..+...++|+..++++|
T Consensus        81 ~~-~-~~------------~~~~--------~~~~~------~~G~l~--------~a~~g~-~s~~sqFfIt~~~~~~l  123 (166)
T d1xo7a_          81 YG-T-RF------------DDEN--------LKIKH------FVGAVS--------MANAGP-NSNGSQFFVTTAPTPWL  123 (166)
T ss_dssp             TB-S-CB------------CCCC--------CCSCC------CTTEEE--------ECCSST-TCBCSCEEEESSCCGGG
T ss_pred             CC-c-cc------------cccc--------ccccc------ccccee--------ecccCC-CCCCCeeEEccCCcccc
Confidence            00 0 00            0000        00011      112221        111111 23456789999999999


Q ss_pred             CCCCcccceeecchhhhhhhccCcCCC
Q psy8249         205 DLKYTIFGKVIDGLETLDNLEKLPVNP  231 (232)
Q Consensus       205 d~~~~~fg~V~~g~~v~~~i~~~~~~~  231 (232)
                      |+.|++||+|++||||||||++.+++.
T Consensus       124 d~~~~vfG~Vi~G~~vl~~I~~~~~~~  150 (166)
T d1xo7a_         124 DGRHVVFGKVVEGMDVVKKVENTKTGL  150 (166)
T ss_dssp             TTTSCEEEEEEECHHHHHHHHTSCBCG
T ss_pred             CccceeeeEEeeHHHHHHHHHcCCCCC
Confidence            999999999999999999999998864

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

Probab=99.81  E-value=7.1e-21  Score=148.06  Aligned_cols=141  Identities=35%  Similarity=0.506  Sum_probs=97.8

Q ss_pred             eeEEeeCCCccccccceeccccCCCCcchhhhhhccCC---CCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCccc
Q psy8249          48 GFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASD---YYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDE  124 (232)
Q Consensus        48 ~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~~~---~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e  124 (232)
                      .|+..+.+.++.|+++++||.+.+|++++||++||.++   +|+++.|||+.+++++|+|+....  .+.  .+.....+
T Consensus        10 vy~di~i~~~~~G~ivieL~~d~aP~tv~nF~~l~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~--~~~--~~~~~~~~   85 (182)
T d2rmca_          10 VFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFMIQGGDFTAR--DGT--GGMSIYGE   85 (182)
T ss_dssp             EEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCSSTTCBEEEEETTTEEEECCCSSS--SSS--CCCBTTBS
T ss_pred             EEEEEEECCEECcEEEEEEcCCCCcHHHHHHHHhhhcCCCccccCceeeeeecCceEEcCCCCCC--CCC--CCCCCcCC
Confidence            35666667789999999999999999999999999765   799999999999999999986531  110  00000000


Q ss_pred             ccccccccccceEEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeec
Q psy8249         125 FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHL  204 (232)
Q Consensus       125 ~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~l  204 (232)
                      ..                 ++..             ....+..-|.|        ++++.. ...+...++|+..++++|
T Consensus        86 ~~-----------------~~~~-------------~~~~~~~~G~l--------sma~~~-~~s~~sqFfI~~~~~~~l  126 (182)
T d2rmca_          86 TF-----------------PDEN-------------FKLKHYGIGWV--------SMANAG-PDTNGSQFFITLTKPTWL  126 (182)
T ss_dssp             CB-----------------CCCC-------------CCSCCCSTTEE--------EECCSS-TTCBCSCEEEESSCCGGG
T ss_pred             cc-----------------cccc-------------cccccCCCccE--------ehhhcC-CCccCccccccccCCchh
Confidence            00                 0000             00001111222        112211 224456689999999999


Q ss_pred             CCCCcccceeecchhhhhhhccCcCCC
Q psy8249         205 DLKYTIFGKVIDGLETLDNLEKLPVNP  231 (232)
Q Consensus       205 d~~~~~fg~V~~g~~v~~~i~~~~~~~  231 (232)
                      |+.|++||+|++|||||++|++++++.
T Consensus       127 d~~~~vFG~Vi~G~dvl~~I~~~~~~~  153 (182)
T d2rmca_         127 DGKHVVFGKVLDGMTVVHSIELQATDG  153 (182)
T ss_dssp             TTTSCEEEEEEECHHHHHHHHTSCBCT
T ss_pred             cccceEEEEEechHHHHHHHHhCCcCC
Confidence            999999999999999999999999875

>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]

Probab=99.81  E-value=9.2e-21  Score=146.29  Aligned_cols=142  Identities=32%  Similarity=0.537  Sum_probs=99.4

Q ss_pred             ceeEEeeCCCccccccceeccccCCCCcchhhhhhccCCC--------CCCceeEEeecCcEEEcCCCCCCCCCCCccCC
Q psy8249          47 KGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY--------YNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWG  118 (232)
Q Consensus        47 ~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~--------y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~  118 (232)
                      ..||...-+.+..|+++|+||.+.+|++++||++||+.++        |+++.|||+++++++|+|+....         
T Consensus         8 ~v~~di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~~~~~~y~~~~f~rv~~~~~~q~G~~~~~---------   78 (173)
T d1qoia_           8 VVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNG---------   78 (173)
T ss_dssp             EEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHSCCEETTEECSSTTCBCCEEETTTEEEECCTTTS---------
T ss_pred             EEEEEEEECCEeCeEEEEEEcCCCCcHHHHHHHHhhcccccccCCCCCcCCcccceeccceeeccCCcccC---------
Confidence            3467777677889999999999999999999999999997        99999999999999999986531         


Q ss_pred             CCCcccccccccccccceEEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEE
Q psy8249         119 KKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITY  198 (232)
Q Consensus       119 ~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I  198 (232)
                      .....+..   ..   +        +..          +.. ....+..-|.|        ++.+.. ...+...++|+.
T Consensus        79 ~~~~~~~~---~~---~--------~~~----------~~~-~~~~~~~~G~l--------~ma~~~-~~s~~sqFfI~~  124 (173)
T d1qoia_          79 DGTGVASI---YR---G--------PFA----------DEN-FKLRHSAPGLL--------SMANSG-PSTNGCQFFITC  124 (173)
T ss_dssp             SSCCCCCT---TS---S--------CBC----------CCC-CCSCCCSTTEE--------EECCSS-TTCBCSCEEEES
T ss_pred             Ccceeecc---cC---C--------ccc----------ccc-cccccCCCcEE--------EeeecC-CCCCCceeeeec
Confidence            11000000   00   0        000          000 00001111222        122222 224556688999


Q ss_pred             eeeeecCCCCcccceeecchhhhhhhccCcCCC
Q psy8249         199 AAHAHLDLKYTIFGKVIDGLETLDNLEKLPVNP  231 (232)
Q Consensus       199 ~~~~~ld~~~~~fg~V~~g~~v~~~i~~~~~~~  231 (232)
                      .++++||+.|++||+|++|||||++|++++|++
T Consensus       125 ~~~~~ldg~~tvFG~Vi~G~dvl~~I~~~~t~~  157 (173)
T d1qoia_         125 SKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGP  157 (173)
T ss_dssp             SCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCG
T ss_pred             cCCccCCcceeEEEEEechHHHHHHHHhCCcCC
Confidence            999999999999999999999999999999864

>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.9e-20  Score=143.33  Aligned_cols=132  Identities=38%  Similarity=0.639  Sum_probs=92.2

Q ss_pred             ccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccce
Q psy8249          57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGI  136 (232)
Q Consensus        57 t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~  136 (232)
                      |+.|+++|+||.+.+|++++||++||+.++|+++.|||+.+++++|+|++...   .  . +.....  ...+..     
T Consensus        16 T~~G~i~ieL~~~~aP~tv~nF~~l~~~g~Y~g~~f~rv~~~~~iq~G~~~~~---~--~-~~~~~~--~~~~~~-----   82 (164)
T d2a2na1          16 TSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGT---G--M-GGESIW--GGEFED-----   82 (164)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEECCTTSS---S--S-CCCCTT--SSCBCC-----
T ss_pred             eceeEEEEEEcCCCChHHHHHHHHHHhCCCcccceeeEEeeeeeEeecccccc---c--C-CCceee--eccccc-----
Confidence            88999999999999999999999999999999999999999999999986531   0  0 000000  000000     


Q ss_pred             EEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCcccceeec
Q psy8249         137 VSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYTIFGKVID  216 (232)
Q Consensus       137 v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~~fg~V~~  216 (232)
                                       ........++.    |.+        ++.... ...+...++|...++++||..|++||+|++
T Consensus        83 -----------------~~~~~~~~~~~----~~l--------~~~~~~-~~s~~sqFfI~~~~~~~ld~~~tVFG~V~~  132 (164)
T d2a2na1          83 -----------------EFHSTLRHDRP----YTL--------SMANAG-SNTNGSQFFITVVPTPWLDNKHTVFGRVTK  132 (164)
T ss_dssp             -----------------CCCTTCCSCSS----SEE--------EECCSS-TTCBCSCEEEESSCCGGGTTTSCEEEEEEE
T ss_pred             -----------------ccccccccCcc----cee--------ehhhcC-CCCCcccceecccCccccccceeEEEEecC
Confidence                             00000001111    111        111111 223345789999999999999999999999


Q ss_pred             chhhhhhhccCcCCC
Q psy8249         217 GLETLDNLEKLPVNP  231 (232)
Q Consensus       217 g~~v~~~i~~~~~~~  231 (232)
                      |||||++|+++++++
T Consensus       133 G~dvv~~I~~~~~~~  147 (164)
T d2a2na1         133 GMEVVQRISNVKVNP  147 (164)
T ss_dssp             CHHHHHHHHTSCBCT
T ss_pred             hHHHHHHHHcCCcCC
Confidence            999999999998864

>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

Probab=99.81  E-value=1.5e-20  Score=144.93  Aligned_cols=142  Identities=31%  Similarity=0.451  Sum_probs=97.1

Q ss_pred             ceeEEeeCCCccccccceeccccCCCCcchhhhhhccC----------CCCCCceeEEeecCcEEEcCCCCCCCCCCCcc
Q psy8249          47 KGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCAS----------DYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI  116 (232)
Q Consensus        47 ~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~~----------~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~  116 (232)
                      +.|+....+.++.|+++|+||.+.+|++++||++||++          ++|+++.|||+++++++|+|++    ......
T Consensus         5 ~v~~Di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~~~~k~~~y~~~~f~rv~~~~~i~~G~~----~~~~~~   80 (172)
T d2igva1           5 KVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDF----TRGNGT   80 (172)
T ss_dssp             EEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCT----TTSSSS
T ss_pred             EEEEEEEECCEeccEEEEEEcCCCCcHHHHHHHHHHhccccccccCcccccCCcceeEEEecceEEcCCc----cCCCCC
Confidence            45777777889999999999999999999999999975          4899999999999999998852    111000


Q ss_pred             CCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeE
Q psy8249         117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFI  196 (232)
Q Consensus       117 ~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i  196 (232)
                      .+.....+..                 ++..             ....+..-|.|        ++++.. .......++|
T Consensus        81 ~~~~~~~~~~-----------------~~e~-------------~~~~~~~~G~l--------sma~~~-~~~~~sqFfI  121 (172)
T d2igva1          81 GGESIYGEKF-----------------PDEN-------------FKEKHTGPGVL--------SMANAG-PNTNGSQFFL  121 (172)
T ss_dssp             CCCBTTBSCB-----------------CCCC-------------CCSCCCSTTEE--------EECCSS-TTCBSSCEEE
T ss_pred             CCcccCCCcc-----------------Cccc-------------cccccCCCcEE--------EEeecC-CCCcCceeEe
Confidence            0000000000                 0000             00000001222        222221 2244567899


Q ss_pred             EEeeeeecCCCCcccceeecchhhhhhhccCcCCC
Q psy8249         197 TYAAHAHLDLKYTIFGKVIDGLETLDNLEKLPVNP  231 (232)
Q Consensus       197 ~I~~~~~ld~~~~~fg~V~~g~~v~~~i~~~~~~~  231 (232)
                      +...+++||+.|++||+|++|||||+||++.+++.
T Consensus       122 t~~~~~~ld~~~~vFG~Vv~Gmdvl~~I~~~~~~~  156 (172)
T d2igva1         122 CTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQS  156 (172)
T ss_dssp             ESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTT
T ss_pred             eecCCcccCCceeEEEEEeccHHHHHHHHcCCCCC
Confidence            99999999999999999999999999999987753

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.1e-20  Score=143.03  Aligned_cols=142  Identities=29%  Similarity=0.452  Sum_probs=97.2

Q ss_pred             ceeEEeeCCCccccccceeccccCCCCcchhhhhhccCC---CCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcc
Q psy8249          47 KGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASD---YYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFED  123 (232)
Q Consensus        47 ~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~~~---~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~  123 (232)
                      +-||...-+.+..|+++|+|+++.+|++++||++||.++   +|+++.|||+++++++|+|+....  .+.   +.....
T Consensus         4 ~v~~Di~i~~~~~G~i~ieL~~~~aP~tv~nF~~l~~~~~~~~Y~g~~f~rv~~~~~iq~g~~~~~--~~~---~~~~~~   78 (164)
T d2z6wa1           4 LVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNH--NGT---GGKSIY   78 (164)
T ss_dssp             EEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTS--SSS---CCCBTT
T ss_pred             eEEEEEEECCEeceEEEEEECCCcCcHHHHHHHHHHhcCCCcccCCcEEEEecccceEecCCccCC--CCC---CCcccc
Confidence            456776666788899999999999999999999999766   799999999999999999986531  110   000000


Q ss_pred             cccccccccccceEEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeee
Q psy8249         124 EFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAH  203 (232)
Q Consensus       124 e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~  203 (232)
                        . ...             ++.           ...+.  +.--|.|        ++++.. ...+...++|...++++
T Consensus        79 --~-~~~-------------~~~-----------~~~~~--~~~~G~l--------sma~~~-~~s~~sqFfi~~~~~~~  120 (164)
T d2z6wa1          79 --G-SRF-------------PDE-----------NFTLK--HVGPGVL--------SMANAG-PNTNGSQFFICTIKTDW  120 (164)
T ss_dssp             --B-SCB-------------CCC-----------CCCSC--CCSTTEE--------EECCSS-TTCBCSCEEEESSCCGG
T ss_pred             --C-CcC-------------Ccc-----------ccccc--cCCccEE--------EEecCC-CCCCCcceeccccCCCc
Confidence              0 000             000           00000  0000111        222322 22345568899999999


Q ss_pred             cCCCCcccceeecchhhhhhhccCcCCC
Q psy8249         204 LDLKYTIFGKVIDGLETLDNLEKLPVNP  231 (232)
Q Consensus       204 ld~~~~~fg~V~~g~~v~~~i~~~~~~~  231 (232)
                      ||+.|++||+|++|||||+||++.+++.
T Consensus       121 ldg~ytVFG~Vv~G~dvl~~I~~~~~~~  148 (164)
T d2z6wa1         121 LDGKHVVFGHVIEGMDVVKKIESFGSKS  148 (164)
T ss_dssp             GTTTSCEEEEEEECHHHHHHHHHTCCTT
T ss_pred             ccccceEEEEecccHHHHHHHHhCCCCC
Confidence            9999999999999999999999988753

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

Probab=99.80  E-value=2.2e-20  Score=142.63  Aligned_cols=140  Identities=34%  Similarity=0.520  Sum_probs=96.9

Q ss_pred             eeEEeeCCCccccccceeccccCCCCcchhhhhhccCCC---CCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCccc
Q psy8249          48 GFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDE  124 (232)
Q Consensus        48 ~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~---y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e  124 (232)
                      -|+..+-+.+..|+++|+|+++.+|.+++||++||++++   |+++.|||+++++++|+|++..    +....+..   .
T Consensus         4 V~fDi~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~----~~~~~~~~---~   76 (162)
T d2cfea1           4 VFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFMLQGGDFTA----GNGTGGKS---I   76 (162)
T ss_dssp             EEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBCCEEETTTEEEECCTTT----SSSSCCCB---T
T ss_pred             EEEEEEECCEEeeEEEEEEcCCCChHHHHHHHHHHhhccCCccCCCEEEEEEecceEecCCCCC----CCCCCCcc---c
Confidence            467777777889999999999999999999999999986   9999999999999999997652    10000000   0


Q ss_pred             ccccccccccceEEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeec
Q psy8249         125 FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHL  204 (232)
Q Consensus       125 ~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~l  204 (232)
                      .......            +               .....|..-|.|        ++++...+ .+...++|+..++++|
T Consensus        77 ~~~~~~~------------e---------------~~~~~h~~~G~v--------sm~~~~~~-s~~sqF~I~~~~~~~l  120 (162)
T d2cfea1          77 YGAKFAD------------E---------------NFQLKHNKPGLL--------SMANAGPN-TNGSQFFITTVVTSWL  120 (162)
T ss_dssp             TBSCBCC------------C---------------CCCSCCCSTTEE--------EECCSSTT-CBSSCEEEESSCCGGG
T ss_pred             CCCcccc------------c---------------cCCCCCCCceEE--------EEeecCCC-CCCcceEEeecCCccc
Confidence            0000000            0               000011111222        12222222 3445689999999999


Q ss_pred             CCCCcccceeecchhhhhhhccCcCC
Q psy8249         205 DLKYTIFGKVIDGLETLDNLEKLPVN  230 (232)
Q Consensus       205 d~~~~~fg~V~~g~~v~~~i~~~~~~  230 (232)
                      |+.|++||+|++|||||++|++..++
T Consensus       121 d~~~~vFG~Vi~G~dvl~~I~~~~~~  146 (162)
T d2cfea1         121 DGKHVVFGEVIDGMNVVKAIEAEGSG  146 (162)
T ss_dssp             TTTSCEEEEEEECHHHHHHHHTTCCT
T ss_pred             cccceEEEEEEehHHHHHHHhcCCCC
Confidence            99999999999999999999887664

>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=1.5e-20  Score=144.14  Aligned_cols=130  Identities=30%  Similarity=0.564  Sum_probs=89.9

Q ss_pred             ccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccce
Q psy8249          57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGI  136 (232)
Q Consensus        57 t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~  136 (232)
                      |+.|+++|+|+.+.+|++++||++||+.++|+++.|||+++++++|+|+....       .+..   .....+.      
T Consensus        11 T~~G~i~ieL~~~~aP~tv~nF~~L~~~~~Y~g~~fhRv~~~~~iq~G~~~~~-------~~~~---~~~~~~~------   74 (166)
T d1v9ta_          11 TSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQ-------MQQK---KPNPPIK------   74 (166)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBEEEEETTTEEEESSBCTT-------CCBC---CCCCCBC------
T ss_pred             ECCeeEEEEEeCCCChHHHHHHHHHhhCCccccceeeEEEEEeecccCCcCCc-------cccc---CCCCCcc------
Confidence            67899999999999999999999999999999999999999999999976431       0000   0000000      


Q ss_pred             EEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCC-----Cccc
Q psy8249         137 VSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLK-----YTIF  211 (232)
Q Consensus       137 v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~-----~~~f  211 (232)
                              +....       ..+| +.     |.|        .+.+......+...++|.+.++++||..     |++|
T Consensus        75 --------~e~~~-------~~~~-~r-----g~v--------~~~~~~~~~s~~sqFfI~~~~~~~ld~~~~~~~~tvf  125 (166)
T d1v9ta_          75 --------NEADN-------GLRN-TR-----GTI--------AMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVF  125 (166)
T ss_dssp             --------CCGGG-------SCCC-CT-----TEE--------EECCCSSTTCBCSCEEEESSCCGGGSCCSSCCCCCEE
T ss_pred             --------ccccc-------cccc-cC-----CEE--------EEEeeecCCCcccccccccCCccccccccccCCEEEe
Confidence                    00000       0011 11     222        1111111123345688999999999874     8999


Q ss_pred             ceeecchhhhhhhccCcCCC
Q psy8249         212 GKVIDGLETLDNLEKLPVNP  231 (232)
Q Consensus       212 g~V~~g~~v~~~i~~~~~~~  231 (232)
                      |+|++|||||++|+++++++
T Consensus       126 G~VveG~dvl~~I~~~~~~~  145 (166)
T d1v9ta_         126 GKVVKGMDVADKISQVPTHD  145 (166)
T ss_dssp             EEEEECHHHHHHHHTSCEEE
T ss_pred             eEEeccHHHHHHHHhCcccC
Confidence            99999999999999988753

>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]

Probab=99.79  E-value=3.8e-20  Score=144.38  Aligned_cols=141  Identities=33%  Similarity=0.514  Sum_probs=98.0

Q ss_pred             eeEEeeCCCccccccceeccccCCCCcchhhhhhccCCC--------CCCceeEEeecCcEEEcCCCCCCCCCCCccCCC
Q psy8249          48 GFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY--------YNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGK  119 (232)
Q Consensus        48 ~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~--------y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~  119 (232)
                      .||...-+.+..|+++|+||.+.+|++++||++||++++        |+++.|||+++++++|+|+....  .+.  ...
T Consensus        19 V~~di~i~~~~~G~I~ieL~~d~aP~tv~nF~~L~~~~~~~~~~~~~Y~g~~f~rv~~~~~i~~G~~~~~--~~~--~~~   94 (186)
T d1z81a1          19 VFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINH--NGS--GSL   94 (186)
T ss_dssp             EEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSSSSBCSSTTEECCEEETTTEEEECCTTTS--SSC--CCC
T ss_pred             EEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHHhcccccCCcccccCCCeeeeeecceeeecCCcccc--CCc--ccc
Confidence            467666667889999999999999999999999999987        99999999999999999986431  110  000


Q ss_pred             CCcccccccccccccceEEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEe
Q psy8249         120 KFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYA  199 (232)
Q Consensus       120 ~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~  199 (232)
                      ....+     ..                         +.......|..-|.+        ++..... ......++|+..
T Consensus        95 ~~~~~-----~~-------------------------~~~~~~~~~~~~G~~--------~~~~~g~-~~~~sqFfIt~~  135 (186)
T d1z81a1          95 SIYGE-----KF-------------------------DDENFDIKHDKEGLL--------SMANSGP-NTNGCQFFITTK  135 (186)
T ss_dssp             BTTBS-----CC-------------------------CCCCCCSCCCSTTEE--------EECCSSS-SCCCSCEEEESS
T ss_pred             cccCC-----cc-------------------------cccccccccCCCccc--------hhhhcCC-Cccccceeeecc
Confidence            00000     00                         000001111111222        1112111 234467899999


Q ss_pred             eeeecCCCCcccceeecc--hhhhhhhccCcCCC
Q psy8249         200 AHAHLDLKYTIFGKVIDG--LETLDNLEKLPVNP  231 (232)
Q Consensus       200 ~~~~ld~~~~~fg~V~~g--~~v~~~i~~~~~~~  231 (232)
                      ++++||+.|++||+|++|  ||||+||++.++++
T Consensus       136 ~~p~Ldg~~tVFG~Vv~G~~mdvv~kI~~~~~~~  169 (186)
T d1z81a1         136 KCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTP  169 (186)
T ss_dssp             CCGGGBTTBCEEEEECSHHHHHHHHHHHHSCBCT
T ss_pred             cccccCCCccEEEEEEeCccHHHHHHHhccCCCC
Confidence            999999999999999998  99999999988864

>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.79  E-value=2.4e-20  Score=143.53  Aligned_cols=142  Identities=34%  Similarity=0.530  Sum_probs=98.3

Q ss_pred             ceeEEeeCCCccccccceeccccCCCCcchhhhhhccC---------CCCCCceeEEeecCcEEEcCCCCCCCCCCCccC
Q psy8249          47 KGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCAS---------DYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIW  117 (232)
Q Consensus        47 ~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~~---------~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~  117 (232)
                      +.||....+.++.|+++|+|+++.+|++++||++||++         ++|+++.|||+++++++|+|+...  ..+.  .
T Consensus         5 ~vy~Di~i~~t~~G~ivIeL~~~~aP~tv~nF~~l~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~g~~~~--~~~~--~   80 (170)
T d1qnga_           5 KVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDITN--GNGS--G   80 (170)
T ss_dssp             EEEEEEEESSSEEEEEEEEECTTTCHHHHHHHHHHHHTCEECTTSSEECCTTCBCCEEETTTEEEECCTTT--SSSS--C
T ss_pred             EEEEEEEECCEEccEEEEEECCCCChHHHHHHHhhhccccccccCccCccCcccceEEEeCceEEecCccC--CCCC--C
Confidence            45777777779999999999999999999999999974         479999999999999999988642  0000  0


Q ss_pred             CCCCcccccccccccccceEEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEE
Q psy8249         118 GKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFIT  197 (232)
Q Consensus       118 ~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~  197 (232)
                      +.....+.   .              ++.           ...+  .|.--|.|        ++++...+ .+...++|+
T Consensus        81 ~~~~~~~~---~--------------~~~-----------~~~~--~~~~~G~l--------sma~~~~~-s~~sqFfIt  121 (170)
T d1qnga_          81 GESIYGRS---F--------------TDE-----------NFNM--KHDQPGLL--------SMANAGPN-TNSSQFFIT  121 (170)
T ss_dssp             CCBTTBSC---B--------------CCC-----------CCCS--CCCSTTEE--------EECCSSTT-CBCSCEEEE
T ss_pred             CcccCCCc---c--------------ccc-----------cccc--cCCCCeEE--------EEeecCCC-Cccccceec
Confidence            00000000   0              000           0000  11111333        22222222 345679999


Q ss_pred             EeeeeecCCCCcccceeecchhhhhhhccCcCCC
Q psy8249         198 YAAHAHLDLKYTIFGKVIDGLETLDNLEKLPVNP  231 (232)
Q Consensus       198 I~~~~~ld~~~~~fg~V~~g~~v~~~i~~~~~~~  231 (232)
                      ..++++||+.|++||+|++|||||++|++.+++.
T Consensus       122 ~~~~~~Ld~~~~vFG~Vv~Gmdvl~~I~~~~~~~  155 (170)
T d1qnga_         122 LVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAKS  155 (170)
T ss_dssp             SSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTT
T ss_pred             cCCcccccccccEEeEEeccHHHHHHHHhcCCCC
Confidence            9999999999999999999999999999988753

>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=1.4e-20  Score=143.98  Aligned_cols=129  Identities=29%  Similarity=0.565  Sum_probs=86.2

Q ss_pred             ccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccce
Q psy8249          57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGI  136 (232)
Q Consensus        57 t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~  136 (232)
                      |+.|+++|+||++.+|++++||++||+.++|+++.|||+++++++|+|++...         .. .......+       
T Consensus         6 T~~G~i~ieL~~~~aP~t~~nF~~l~~~g~Y~g~~fhrv~~~~~iq~G~~~~~---------~~-~~~~~~~~-------   68 (164)
T d1lopa_           6 TNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPG---------MK-QKATKEPI-------   68 (164)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEECCEEETTTEEEESSEETT---------TE-ECCCCCCB-------
T ss_pred             eCCeEEEEEEcCCCCHHHHHHHHHHHHccCcCCceeeEEcCCceeeeeccccC---------Cc-CCccCCCc-------
Confidence            78999999999999999999999999999999999999999999999875310         00 00000000       


Q ss_pred             EEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeee--------eecCCCC
Q psy8249         137 VSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAH--------AHLDLKY  208 (232)
Q Consensus       137 v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~--------~~ld~~~  208 (232)
                             ++...       ...+|..      |.|        .+.+......+...++|...++        +++|..|
T Consensus        69 -------~~e~~-------~~~~h~~------g~l--------~~~~~~~~~~~~sqFfi~~~~~~~~~~~~~~~~~~~y  120 (164)
T d1lopa_          69 -------KNEAN-------NGLKNTR------GTL--------AMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGY  120 (164)
T ss_dssp             -------CCCCC-------SSCCCCT------TEE--------EECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTSCC
T ss_pred             -------ccccc-------cccccee------eEE--------EEeccCCCCCccceeeeeccccccccccCCCcCCCce
Confidence                   00000       0111111      111        1111111122334466666544        6788899


Q ss_pred             cccceeecchhhhhhhccCcCC
Q psy8249         209 TIFGKVIDGLETLDNLEKLPVN  230 (232)
Q Consensus       209 ~~fg~V~~g~~v~~~i~~~~~~  230 (232)
                      ++||+|++|||||+||++++++
T Consensus       121 tvFG~Vv~G~dvl~~I~~~~t~  142 (164)
T d1lopa_         121 CVFAEVVDGMDEVDKIKGVATG  142 (164)
T ss_dssp             CEEEEEEECHHHHHHHHTSCEE
T ss_pred             eecCEEeccHHHHHHHHhCCcC
Confidence            9999999999999999998875

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

Probab=99.74  E-value=1.5e-19  Score=139.09  Aligned_cols=136  Identities=31%  Similarity=0.452  Sum_probs=87.8

Q ss_pred             eCCCccccccceeccccCCCCcchhhhhhccCCC---CCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccc
Q psy8249          53 TGDPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETL  129 (232)
Q Consensus        53 ~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~---y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l  129 (232)
                      +.+.|+.|+++|+||.+.+|++++||++||+.++   |+++.|||+++++++|+|++...    .   +.          
T Consensus        14 ~~~~T~~G~i~IeL~~~~aP~tv~nF~~l~~~~~~~~y~~~~f~ri~~~~~iq~G~~~~~----~---~~----------   76 (171)
T d2c3ba1          14 GTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRG----N---GT----------   76 (171)
T ss_dssp             TCSCCEEEEEEEEECTTTSHHHHHHHHHHHHSCTTTSSTTCBCCEEETTTEEEECC------------------------
T ss_pred             ccccceeeEEEEEEcCCCChHHHHHHHHHhhhcccccccCceeeEEEEEEeeEcCCccCC----C---CC----------
Confidence            3566889999999999999999999999999876   89999999999999999986531    0   00          


Q ss_pred             cccccceEEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCc
Q psy8249         130 KHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYT  209 (232)
Q Consensus       130 ~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~  209 (232)
                         ........         . +..    ......+..-|.|.        +++.. ...+...++|+..++++||+.|+
T Consensus        77 ---~~~~~~~~---------~-~~~----~~~~~~~~~~G~ls--------ma~~~-~~s~~sqFfI~~~~~~~ldg~~t  130 (171)
T d2c3ba1          77 ---GGRSIYGD---------K-FAD----ENFSRKHDKKGILS--------MANAG-PNTNGSQFFITTAVTSWLDGKHV  130 (171)
T ss_dssp             --------------------------------CHHHHHTCEEE--------EC----------CEEEECSCCTTCCSCCE
T ss_pred             ---CCCcCCCC---------c-ccc----ccccccCCCCceEE--------eeecC-CCCCCcceeeccCCccccCCCce
Confidence               00000000         0 000    00000011112221        11111 12445678999999999999999


Q ss_pred             ccceeec--chhhhhhhccCcCCC
Q psy8249         210 IFGKVID--GLETLDNLEKLPVNP  231 (232)
Q Consensus       210 ~fg~V~~--g~~v~~~i~~~~~~~  231 (232)
                      +||+|++  |||||++|+++++++
T Consensus       131 vFG~Vie~~G~dvl~~I~~~~t~~  154 (171)
T d2c3ba1         131 VFGEVADEKSYSVVKEIEALGSSS  154 (171)
T ss_dssp             EEEEECSHHHHHHHHHHHTTCCTT
T ss_pred             EEEEEEeccCHHHHHHHHcCCCCC
Confidence            9999995  999999999988764

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.66  E-value=1.2e-17  Score=130.99  Aligned_cols=150  Identities=24%  Similarity=0.319  Sum_probs=87.9

Q ss_pred             ceeEEeeCCCccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCccccc
Q psy8249          47 KGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFK  126 (232)
Q Consensus        47 ~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~  126 (232)
                      +.||....+.+..|+++|+||.+.+|++++||++||+++.|.+..++|..--                       ..-..
T Consensus        16 ~v~~Di~i~~~~~G~I~IeL~~d~aP~tv~nF~~L~~~~~~~~~~~~~~~~y-----------------------~g~~f   72 (195)
T d1ihga2          16 RVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHF-----------------------KGCPF   72 (195)
T ss_dssp             EEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCC-----------------------TTCBE
T ss_pred             EEEEEEEECCEeeeEEEEEECCCCChHHHHHHHHHhccccccccccCCcccc-----------------------CCcee
Confidence            4567666677889999999999999999999999999999887776552100                       00000


Q ss_pred             ccccccccceEEecccC-C-Ccccce-EEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeee
Q psy8249         127 ETLKHSERGIVSMANNG-P-NTNASQ-FFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAH  203 (232)
Q Consensus       127 ~~l~~~~~g~v~~~~~~-~-~~~~s~-f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~  203 (232)
                      .++.  ....+...... . ...++. +-.... .......|..-|.|        .+.....+ .+...++|+..++++
T Consensus        73 ~rv~--~~~~i~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~G~l--------sm~~~~~~-s~~SqFfItl~~~~~  140 (195)
T d1ihga2          73 HRII--KKFMIQGGDFSNQNGTGGESIYGEKFE-DENFHYKHDKEGLL--------SMANAGSN-TNGSQFFITTVPTPH  140 (195)
T ss_dssp             EEEE--TTTEEEECCTTTSSSSCCCBTTBSCBC-CCCCCBCCCSTTEE--------EECCSSTT-CBCSCEEEESSCCGG
T ss_pred             eEEE--cCceeecCCccCCCCCCCccCCCCccc-ccccCcccCcceEE--------eeeecCCC-CCCceeEeeccCCcc
Confidence            0110  11111111100 0 000000 000000 01111122222222        22222222 344578999999999


Q ss_pred             cCCCCcccceeecchhhhhhhccCcCCC
Q psy8249         204 LDLKYTIFGKVIDGLETLDNLEKLPVNP  231 (232)
Q Consensus       204 ld~~~~~fg~V~~g~~v~~~i~~~~~~~  231 (232)
                      ||+.|++||+|++|||||++|++.+++.
T Consensus       141 LDg~ytVFG~Vv~Gmdvl~~I~~~~t~~  168 (195)
T d1ihga2         141 LDGKHVVFGQVIKGMGVAKILENVEVKG  168 (195)
T ss_dssp             GTTTSCEEEEEEECHHHHHHHHTSCEET
T ss_pred             cCCcceEEEEEecCHHHHHHHHcCCCCC
Confidence            9999999999999999999999987753

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

Probab=99.64  E-value=3.4e-17  Score=126.07  Aligned_cols=141  Identities=34%  Similarity=0.483  Sum_probs=95.9

Q ss_pred             eeEEeeCCCccccccceeccccCCCCcchhhhhhccC-----------CCCCCceeEEeecCcEEEcCCCCCCCCCCCcc
Q psy8249          48 GFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCAS-----------DYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI  116 (232)
Q Consensus        48 ~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~~-----------~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~  116 (232)
                      .||...-+.+..|+++++||++.+|++++||++||++           ++|+++.|||+.+++++|+|+...        
T Consensus         6 v~~di~i~~~~~G~I~ieL~~d~aP~tv~nF~~l~~~~~~~~~~~~k~~~Y~~~~f~Rv~~~~~iq~g~~~~--------   77 (174)
T d1a33a_           6 VFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTK--------   77 (174)
T ss_dssp             EEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCCCTTCBEEEEETTTEEEECCTTT--------
T ss_pred             EEEEEEECCEeceEEEEEECCCCChHHHHHHHHHHhcccCCCcccCccceeCCceeeEEEeCCEEeeCCCCC--------
Confidence            4666666667889999999999999999999999975           479999999999999999987642        


Q ss_pred             CCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeE
Q psy8249         117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFI  196 (232)
Q Consensus       117 ~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i  196 (232)
                       +.....+..       .+   ..   +            ........+..-|.+        ++.....+ .+...++|
T Consensus        78 -~~~~~~~~~-------~~---~~---~------------~~~~~~~~~~~~g~l--------~~~~~~~~-s~~sqFfI  122 (174)
T d1a33a_          78 -GDGTGGESI-------YG---GM---F------------DDEEFVMKHDEPFVV--------SMANKGPN-TNGSQFFI  122 (174)
T ss_dssp             -SSSSCCCCT-------TS---SC---B------------CCCCSCSCCCSTTEE--------EECCSSTT-CBCSCEEE
T ss_pred             -CCCCCCCCc-------cC---cc---c------------cccccccccCcceee--------eeeccCCC-CCCccccc
Confidence             100000000       00   00   0            000000001100111        11122222 34567899


Q ss_pred             EEeeeeecCCCCcccceeecchhhhhhhccCcCCC
Q psy8249         197 TYAAHAHLDLKYTIFGKVIDGLETLDNLEKLPVNP  231 (232)
Q Consensus       197 ~I~~~~~ld~~~~~fg~V~~g~~v~~~i~~~~~~~  231 (232)
                      ...++++||+.|++||+|++||||||+|++++|+.
T Consensus       123 ~~~~~p~ld~~~~vFG~VveG~dvl~~I~~~~t~~  157 (174)
T d1a33a_         123 TTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNS  157 (174)
T ss_dssp             ESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCT
T ss_pred             ccCCcccccccceeEEEEechHHHHHHHHhCCcCC
Confidence            99999999999999999999999999999999875

>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.58  E-value=2.6e-16  Score=120.73  Aligned_cols=44  Identities=32%  Similarity=0.557  Sum_probs=39.6

Q ss_pred             CCCceeeEEEeeeeecCCCCcccceee--cchhhhhhhccCcCCCC
Q psy8249         189 NHKPIFFITYAAHAHLDLKYTIFGKVI--DGLETLDNLEKLPVNPN  232 (232)
Q Consensus       189 ~~~P~~~i~I~~~~~ld~~~~~fg~V~--~g~~v~~~i~~~~~~~~  232 (232)
                      .+.+.++|.+.++++||+.|+|||+|+  |||||||||++++++++
T Consensus       111 s~~sqFfIt~~~~p~ld~~~tVFG~Vv~geGmdvl~~I~~~~~~~~  156 (171)
T d1w74a_         111 TNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGN  156 (171)
T ss_dssp             CBSSCEEEESSCCGGGTTTSCEEEEECSHHHHHHHHHHHTSCBCTT
T ss_pred             CCCcceEeeccCCCccccccEEEEEEeccccHHHHHHHHcCCcCCC
Confidence            456779999999999999999999999  59999999999998753