Psyllid ID: psy8250

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210--
Protein Sequence
METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCRPADELNRQ
Secondary Structure (PSIPRED)
cccccccccccccccccEEEEEccEEEEEEccccccHHHHHHHHHcccccccEEEEEEccEEccccccccEEEEEEccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHcccccHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEcccEEEEcccEEEEEEccccccHHHHHHHHHHHcccccccEEEEcccEccHHHHHHHHcHHEEccccccccHHHHHHHccHHHHHcccccHHHHHHHHHHHHHHcccHHHHcccccHcccHHHHHHHHHHHHHccccEEEEcccccccHHHHHHHHHHHHHHHHccEEEEEccccEEEEEEccccHcHHcHHHHHHcc
Coil and Loop (DISEMBL)
metfhplfgdtnykeSLSGiaesgsllaimgpsgagkTTLLACISQRiqgdvdgqILLNGLEVEKNLMVkvsgfvpqhdltvdtlTVHEHMTLMARLKMDRNLHHVERARTVDALLKELgllkcknsVLNVLSGGERKRVALAVQTIIVqsgfvpqhdltvdtltVHEHMTLMARLKMDRNLHHVERARTVDALLKELgllkcrpadelnrq
Flexible Loop (DISEMBL)
METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIvqsgfvpqhdlTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLkelgllkcrpadelnrq
Low Complexity Region (SEG)
METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCRPADELNRQ
Disordered region (IsUnstruct)
*******************I***GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKC*********
Disordered Region (DISOPRED)
*******FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDR*****ERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCR********
Disordered Region (DISEMBL)
METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCRPADELNRQ
Disordered Region (DISPRO)
*ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCRPADELNR*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCRPADELNRQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	212	2.2.26 [Sep-21-2011]
P12428	675	Protein brown OS=Drosophi	yes	N/A	0.627	0.197	0.436	3e-27
Q24739	668	Protein brown OS=Drosophi	N/A	N/A	0.617	0.196	0.412	2e-24
Q11180	598	ABC transporter ATP-bindi	yes	N/A	0.603	0.214	0.437	3e-22
P10090	687	Protein white OS=Drosophi	no	N/A	0.764	0.235	0.358	4e-22
Q55DW4	793	ABC transporter G family	yes	N/A	0.622	0.166	0.366	4e-21
Q54T02	1159	ABC transporter G family	no	N/A	0.759	0.138	0.343	9e-21
P45843	666	Protein scarlet OS=Drosop	no	N/A	0.608	0.193	0.405	3e-20
Q05360	677	Protein white OS=Lucilia	N/A	N/A	0.627	0.196	0.370	4e-20
Q7XA72	672	ABC transporter G family	no	N/A	0.617	0.194	0.386	6e-20
Q84TH5	662	ABC transporter G family	no	N/A	0.632	0.202	0.382	1e-19

>sp|P12428|BROWN_DROME Protein brown OS=Drosophila melanogaster GN=bw PE=2 SV=1

 Score =  121 bits (304), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 58/133 (43%), Positives = 90/133 (67%)

Query: 15  ESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGF 74
           +  SG  ++G L+AI+G SGAGKTTLLA ISQR++G++ G ++LNG+ +E++ M ++S F
Sbjct: 50  QDASGHMKTGDLIAILGGSGAGKTTLLAAISQRLRGNLTGDVVLNGMAMERHQMTRISSF 109

Query: 75  VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSG 134
           +PQ ++ V T T +EH+  M+  KM R     E+ + V  LL  +GL    ++ +  LSG
Sbjct: 110 LPQFEINVKTFTAYEHLYFMSHFKMHRRTTKAEKRQRVADLLLAVGLRDAAHTRIQQLSG 169

Query: 135 GERKRVALAVQTI 147
           GERKR++LA + I
Sbjct: 170 GERKRLSLAEELI 182

Part of a membrane-spanning permease system necessary for the transport of pigment precursors into pigment cells responsible for eye color. Brown and white dimerize for the transport of guanine.
Drosophila melanogaster (taxid: 7227)

>sp|Q24739|BROWN_DROVI Protein brown OS=Drosophila virilis GN=bw PE=2 SV=1

 Score =  112 bits (279), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 54/131 (41%), Positives = 88/131 (67%)

Query: 17  LSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVP 76
           +SG  ++G L+AI+G SGAGKTTLLA ISQR++G++ G ++LNG+ +E++ M ++S F+ 
Sbjct: 49  VSGHLKTGDLIAILGGSGAGKTTLLAAISQRLRGNLTGDVVLNGMAMERDQMTRISSFLR 108

Query: 77  QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGE 136
           + ++ V T T ++ +  M+  KM R     E+ + V  LL  +GL    ++ +  LSGGE
Sbjct: 109 EFEINVKTFTAYDDLYFMSHFKMHRRTTKSEKRQAVSDLLLAVGLRDAAHTRIQQLSGGE 168

Query: 137 RKRVALAVQTI 147
           RKR++LA + I
Sbjct: 169 RKRLSLAEELI 179

Part of a membrane-spanning permease system necessary for the transport of pigment precursors into pigment cells responsible for eye color. Brown and white dimerize for the transport of guanine.

Drosophila virilis (taxid: 7244)

>sp|Q11180|WHT1_CAEEL ABC transporter ATP-binding protein/permease wht-1 OS=Caenorhabditis elegans GN=wht-1 PE=2 SV=2

 Score =  105 bits (261), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 60/137 (43%), Positives = 88/137 (64%), Gaps = 9/137 (6%)

Query: 16  SLSGIAESGSLLAIMGPSGAGKTTLLACISQR--IQGDVDGQILLNGLEVEKNLMVKVSG 73
           ++SG+AESG LLAI+G SGAGKTTL+  ++ R     DV G IL++G    K  + ++S 
Sbjct: 12  NVSGMAESGKLLAILGSSGAGKTTLMNVLTSRNLTNLDVQGSILIDGRRANKWKIREMSA 71

Query: 74  FVPQHDLTVDTLTVHEHMTLMARLKM-DRNLHHVERARTVDALLKELGLLKCKNSVLNV- 131
           FV QHD+ V T+T  EH+  MARL+M D+     ER   V+ +L ++GL KC ++V+ + 
Sbjct: 72  FVQQHDMFVGTMTAREHLQFMARLRMGDQYYSDHERQLRVEQVLTQMGLKKCADTVIGIP 131

Query: 132 -----LSGGERKRVALA 143
                LS GE+KR++ A
Sbjct: 132 NQLKGLSCGEKKRLSFA 148

Caenorhabditis elegans (taxid: 6239)

>sp|P10090|WHITE_DROME Protein white OS=Drosophila melanogaster GN=w PE=2 SV=2

 Score =  104 bits (260), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 62/173 (35%), Positives = 98/173 (56%), Gaps = 11/173 (6%)

Query: 15  ESLSGIAESGSLLAIMGPSGAGKTTLLACIS----QRIQGDVDGQILLNGLEVEKNLMVK 70
           +++ G+A  G LLA+MG SGAGKTTLL  ++    Q IQ    G  LLNG  V+   M  
Sbjct: 114 KNVCGVAYPGELLAVMGSSGAGKTTLLNALAFRSPQGIQVSPSGMRLLNGQPVDAKEMQA 173

Query: 71  VSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLN 130
              +V Q DL + +LT  EH+   A ++M R+L + +R   VD +++EL L KC+++++ 
Sbjct: 174 RCAYVQQDDLFIGSLTAREHLIFQAMVRMPRHLTYRQRVARVDQVIQELSLSKCQHTIIG 233

Query: 131 V------LSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARL 176
           V      LSGGERKR+A A + +      +     + +D+ T H  + ++ +L
Sbjct: 234 VPGRVKGLSGGERKRLAFASEALTDPPLLICDEPTSGLDSFTAHSVVQVLKKL 286

Part of a membrane-spanning permease system necessary for the transport of pigment precursors into pigment cells responsible for eye color. White dimerize with brown for the transport of guanine. Scarlet and white complex transports a metabolic intermediate (such as 3-hydroxy kynurenine) from the cytoplasm into the pigment granules.

Drosophila melanogaster (taxid: 7227)

>sp|Q55DW4|ABCG1_DICDI ABC transporter G family member 1 OS=Dictyostelium discoideum GN=abcG1 PE=3 SV=1

 Score =  101 bits (251), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 51/139 (36%), Positives = 89/139 (64%), Gaps = 7/139 (5%)

Query: 16  SLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFV 75
           +++G  ESG++ AIMGPSGAGKTTLL  ++ R+  +  G + LNG + + N+  K+ G+V
Sbjct: 141 NINGHIESGTIFAIMGPSGAGKTTLLDILAHRLNINGSGTMYLNGNKSDFNIFKKLCGYV 200

Query: 76  PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV---- 131
            Q D  + +LTV E +   A+LKM R++   E+ + V  ++ E+GL +C ++++      
Sbjct: 201 TQSDSLMPSLTVRETLNFYAQLKMPRDVPLKEKLQRVQDIIDEMGLNRCADTLVGTADNK 260

Query: 132 ---LSGGERKRVALAVQTI 147
              +SGGER+RV ++++ +
Sbjct: 261 IRGISGGERRRVTISIELL 279

Dictyostelium discoideum (taxid: 44689)

>sp|Q54T02|ABCGO_DICDI ABC transporter G family member 24 OS=Dictyostelium discoideum GN=abcG24 PE=3 SV=1

 Score =  100 bits (248), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 58/169 (34%), Positives = 104/169 (61%), Gaps = 8/169 (4%)

Query: 15  ESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ-GDVDGQILLNGLEVEKNLMVKVSG 73
           ++++G+   G L A+MG SG+GKT+LL  +S R   G++DG++L+NG  V KN   ++SG
Sbjct: 481 DNVNGVCPPGQLTALMGLSGSGKTSLLDILSGRKNVGNIDGKVLINGAPVGKNFK-RISG 539

Query: 74  FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV-- 131
           +V Q D+ + TLT  EH+   A LK+  N+    + + V ++L+ELGL +  ++ +    
Sbjct: 540 YVTQDDIQIGTLTCREHLMFAALLKLPENMSLEIKQQRVASVLEELGLTRVADNPIGTSE 599

Query: 132 ---LSGGERKRVALAVQTIIVQS-GFVPQHDLTVDTLTVHEHMTLMARL 176
              +SGGER+R+++A + I+  S  F+ +    +D+ +  E +T + +L
Sbjct: 600 KRGISGGERRRLSIATELIVDPSILFIDEPTSGLDSHSASELITKLKQL 648

Dictyostelium discoideum (taxid: 44689)

>sp|P45843|SCRT_DROME Protein scarlet OS=Drosophila melanogaster GN=st PE=1 SV=3

 Score = 98.6 bits (244), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 56/138 (40%), Positives = 84/138 (60%), Gaps = 9/138 (6%)

Query: 18  SGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD--VDGQILLNGLEVEKNLMVKVSGFV 75
           +G  + G+L+A+MG SG+GKTTL++ ++ R      V G IL+NG  +    M ++SG+V
Sbjct: 95  TGAIQPGTLMALMGSSGSGKTTLMSTLAFRQPAGTVVQGDILINGRRIGP-FMHRISGYV 153

Query: 76  PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVL------ 129
            Q DL + +LTV EH+  MA L++DR +   ER   +  LL+  GLL    + +      
Sbjct: 154 YQDDLFLGSLTVLEHLNFMAHLRLDRRVSKEERRLIIKELLERTGLLSAAQTRIGSGDDK 213

Query: 130 NVLSGGERKRVALAVQTI 147
            VLSGGERKR+A AV+ +
Sbjct: 214 KVLSGGERKRLAFAVELL 231

Part of a membrane-spanning permease system necessary for the transport of pigment precursors into pigment cells responsible for eye color. Scarlet and white complex transports a metabolic intermediate (such as 3-hydroxy kynurenine) from the cytoplasm into the pigment granules.

Drosophila melanogaster (taxid: 7227)

>sp|Q05360|WHITE_LUCCU Protein white OS=Lucilia cuprina GN=W PE=2 SV=2

 Score = 98.2 bits (243), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 53/143 (37%), Positives = 85/143 (59%), Gaps = 10/143 (6%)

Query: 15  ESLSGIAESGSLLAIMGPSGAGKTTLLACISQR----IQGDVDGQILLNGLEVEKNLMVK 70
           +++ G+A  G LLA+MG SGAGKTTLL  ++ R    +Q       +LNG  V+   M  
Sbjct: 103 KNVCGVAYPGELLAVMGSSGAGKTTLLNALAFRSARGVQISPSSVRMLNGHPVDAKEMQA 162

Query: 71  VSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLN 130
              +V Q DL + +LT  EH+   A ++M R +   ++ + VD ++++L L+KC+N+++ 
Sbjct: 163 RCAYVQQDDLFIGSLTAREHLIFQATVRMPRTMTQKQKLQRVDQVIQDLSLIKCQNTIIG 222

Query: 131 V------LSGGERKRVALAVQTI 147
           V      LSGGERKR+A A + +
Sbjct: 223 VPGRVKGLSGGERKRLAFASEAL 245

May be part of a membrane-spanning permease system necessary for the transport of pigment precursors into pigment cells responsible for eye color.

Lucilia cuprina (taxid: 7375)

>sp|Q7XA72|AB21G_ARATH ABC transporter G family member 21 OS=Arabidopsis thaliana GN=ABCG21 PE=2 SV=2

 Score = 97.4 bits (241), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 53/137 (38%), Positives = 85/137 (62%), Gaps = 6/137 (4%)

Query: 17  LSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVP 76
           +SGI + G LLA++GPSG+GKTTL+  ++ R+QG + G +  NG     ++  K +GFV 
Sbjct: 103 VSGIVKPGELLAMLGPSGSGKTTLVTALAGRLQGKLSGTVSYNGEPFTSSVKRK-TGFVT 161

Query: 77  QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSV-----LNV 131
           Q D+    LTV E +T  A L++ + L   E+   V+ ++ +LGL +C NSV     +  
Sbjct: 162 QDDVLYPHLTVMETLTYTALLRLPKELTRKEKLEQVEMVVSDLGLTRCCNSVIGGGLIRG 221

Query: 132 LSGGERKRVALAVQTII 148
           +SGGERKRV++  + ++
Sbjct: 222 ISGGERKRVSIGQEMLV 238

Arabidopsis thaliana (taxid: 3702)

>sp|Q84TH5|AB25G_ARATH ABC transporter G family member 25 OS=Arabidopsis thaliana GN=ABCG25 PE=2 SV=1

 Score = 96.7 bits (239), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/141 (38%), Positives = 91/141 (64%), Gaps = 7/141 (4%)

Query: 17  LSGIAESGSLLAIMGPSGAGKTTLLACISQRIQG-DVDGQILLNGLEVEKNLMVKVSGFV 75
           ++G+   G  +A++GPSG+GK+TLL  ++ R+ G ++ G+IL+N  ++ K  + K +GFV
Sbjct: 87  VTGMISPGEFMAVLGPSGSGKSTLLNAVAGRLHGSNLTGKILINDGKITKQTL-KRTGFV 145

Query: 76  PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSV-----LN 130
            Q DL    LTV E +  +A L++ R+L    + R  ++++ ELGL KC+N+V     + 
Sbjct: 146 AQDDLLYPHLTVRETLVFVALLRLPRSLTRDVKLRAAESVISELGLTKCENTVVGNTFIR 205

Query: 131 VLSGGERKRVALAVQTIIVQS 151
            +SGGERKRV++A + +I  S
Sbjct: 206 GISGGERKRVSIAHELLINPS 226

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	212
383866342	643	PREDICTED: protein scarlet-like [Megachi	0.617	0.203	0.587	1e-35
380024007	629	PREDICTED: protein scarlet-like [Apis fl	0.608	0.205	0.558	4e-34
350405171	629	PREDICTED: protein scarlet-like [Bombus	0.608	0.205	0.573	4e-34
340726282	629	PREDICTED: protein scarlet-like [Bombus	0.608	0.205	0.573	5e-34
328719323	552	PREDICTED: protein scarlet-like [Acyrtho	0.636	0.244	0.492	1e-32
357621664	644	putative scarlet [Danaus plexippus]	0.617	0.203	0.534	9e-32
328719312	533	PREDICTED: protein scarlet-like [Acyrtho	0.636	0.253	0.5	3e-31
328696629	621	PREDICTED: protein scarlet-like [Acyrtho	0.613	0.209	0.530	3e-31
328712876	620	PREDICTED: protein scarlet-like [Acyrtho	0.627	0.214	0.533	1e-29
321460546	558	ABC protein, subfamily ABCG [Daphnia pul	0.622	0.236	0.453	2e-26

>gi|383866342|ref|XP_003708629.1| PREDICTED: protein scarlet-like [Megachile rotundata]

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 77/131 (58%), Positives = 97/131 (74%)

Query: 17  LSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVP 76
           +SGI  SG L+AI+GPSGAGKTTLLA IS+R++G   G+ILLNG  ++   M+++SGFVP
Sbjct: 68  VSGIVNSGMLMAILGPSGAGKTTLLATISRRVKGQATGEILLNGKPIDTGQMIRISGFVP 127

Query: 77  QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGE 136
           Q DL +++LTV EHM  MA +KMDR L    R + +  LL ELGL KC NS L+ LSGGE
Sbjct: 128 QTDLAIESLTVLEHMEFMACMKMDRRLRANVRRQRIMVLLGELGLGKCGNSKLSSLSGGE 187

Query: 137 RKRVALAVQTI 147
           RKRV LAVQ +
Sbjct: 188 RKRVTLAVQLL 198

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380024007|ref|XP_003695800.1| PREDICTED: protein scarlet-like [Apis florea]

 Score =  150 bits (378), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 72/129 (55%), Positives = 95/129 (73%)

Query: 17  LSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVP 76
           ++GI  SG L+AIMGPSGAGKTTLLA IS+R++G   G +LLNG  ++   M+++SGFVP
Sbjct: 56  VNGIVNSGMLMAIMGPSGAGKTTLLATISRRVKGKATGDVLLNGKPIDTEQMIRISGFVP 115

Query: 77  QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGE 136
           Q DL +++LT+ EHM  MA +KMDR L    R + +  LL+ELGL KC  + L+ LSGGE
Sbjct: 116 QTDLAIESLTIQEHMEFMACMKMDRRLRANFRRQRITILLRELGLAKCTFTKLSALSGGE 175

Query: 137 RKRVALAVQ 145
           RKRV LAV+
Sbjct: 176 RKRVTLAVE 184

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350405171|ref|XP_003487348.1| PREDICTED: protein scarlet-like [Bombus impatiens]

 Score =  150 bits (378), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 74/129 (57%), Positives = 96/129 (74%)

Query: 17  LSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVP 76
           +SGI  SG L+AIMGPSGAGKTTLLA IS+R++G+  G +LLNG  ++ + M+++SGFVP
Sbjct: 56  VSGIVNSGMLMAIMGPSGAGKTTLLATISRRVKGEATGDVLLNGKPIDTDQMIRISGFVP 115

Query: 77  QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGE 136
           Q DL +++LT+ EHM  MA +KMDR L    R + +  LL ELGL KC  + L+ LSGGE
Sbjct: 116 QMDLAIESLTILEHMEFMACMKMDRRLRANVRRQRIMVLLGELGLGKCITTKLSALSGGE 175

Query: 137 RKRVALAVQ 145
           RKRV LAVQ
Sbjct: 176 RKRVTLAVQ 184

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340726282|ref|XP_003401489.1| PREDICTED: protein scarlet-like [Bombus terrestris]

 Score =  149 bits (377), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 74/129 (57%), Positives = 96/129 (74%)

Query: 17  LSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVP 76
           +SGI  SG L+AIMGPSGAGKTTLLA IS+R++G+  G +LLNG  ++ + M+++SGFVP
Sbjct: 56  VSGIVNSGMLMAIMGPSGAGKTTLLATISRRVKGEATGDVLLNGKPIDTDQMIRISGFVP 115

Query: 77  QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGE 136
           Q DL +++LT+ EHM  MA +KMDR L    R + +  LL ELGL KC  + L+ LSGGE
Sbjct: 116 QMDLAIESLTILEHMEFMACMKMDRRLGANVRRQRIMVLLGELGLGKCITTKLSALSGGE 175

Query: 137 RKRVALAVQ 145
           RKRV LAVQ
Sbjct: 176 RKRVTLAVQ 184

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328719323|ref|XP_001952363.2| PREDICTED: protein scarlet-like [Acyrthosiphon pisum]

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 68/138 (49%), Positives = 102/138 (73%), Gaps = 3/138 (2%)

Query: 11  TNYKE---SLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL 67
           T+YK+   ++SG  +SG+LL IMGPSG+GKTTL+A IS R +G+ +G++LLNG  + + +
Sbjct: 63  TSYKQLLHNVSGNVQSGNLLGIMGPSGSGKTTLMATISHRTKGNFEGELLLNGQPISEEV 122

Query: 68  MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNS 127
           M+K+SGFVPQHD++ D LT  EH++LMA LK+ R    +E    +D ++  LG+ K  ++
Sbjct: 123 MIKISGFVPQHDISFDQLTALEHLSLMANLKVSRKTTKIELKEHIDKIITTLGMSKFLDT 182

Query: 128 VLNVLSGGERKRVALAVQ 145
            ++ LSGGERK++ALAVQ
Sbjct: 183 RISFLSGGERKKIALAVQ 200

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357621664|gb|EHJ73425.1| putative scarlet [Danaus plexippus]

 Score =  142 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 70/131 (53%), Positives = 93/131 (70%)

Query: 17  LSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVP 76
           +SG+  SG+L+A+MG SGAGKTTLLA IS+R +  + G ++LNG     +L+ ++SGF+P
Sbjct: 70  VSGVVSSGNLVALMGSSGAGKTTLLAAISRRDKSAMSGYLMLNGRLAGADLIARISGFLP 129

Query: 77  QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGE 136
           Q DL++D LTV EHM  MARL MD+      R+R V+ LL ELG+  C  + L  LSGGE
Sbjct: 130 QEDLSIDDLTVSEHMEFMARLMMDKRSTKSIRSRRVEQLLGELGVANCTRTKLKALSGGE 189

Query: 137 RKRVALAVQTI 147
           RKRVALAVQ +
Sbjct: 190 RKRVALAVQLL 200

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328719312|ref|XP_001950672.2| PREDICTED: protein scarlet-like [Acyrthosiphon pisum]

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 69/138 (50%), Positives = 98/138 (71%), Gaps = 3/138 (2%)

Query: 11  TNYKESL---SGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL 67
           T+YK+ L   SG   SG LL IMGPSG+GKTTL+A IS R +G+ +G++LLNG  + + +
Sbjct: 63  TSYKQILHNVSGNIHSGHLLGIMGPSGSGKTTLMATISHRSKGNFEGELLLNGQPISEEV 122

Query: 68  MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNS 127
           M+K+SGFVPQHD+  D LT  EH++LMA LK+ R    +E    +D ++  LG+ K  ++
Sbjct: 123 MIKISGFVPQHDINFDQLTALEHLSLMANLKVSRKTTKIELKEHIDKIITTLGMSKFLDT 182

Query: 128 VLNVLSGGERKRVALAVQ 145
            ++ LSGGERK++ALAVQ
Sbjct: 183 RISFLSGGERKKIALAVQ 200

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328696629|ref|XP_001944001.2| PREDICTED: protein scarlet-like [Acyrthosiphon pisum]

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 69/130 (53%), Positives = 95/130 (73%)

Query: 16  SLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFV 75
           ++SG A+ G+LL IMGPSG+GKTTL+A IS R +G+ +G++LLNG  V + +M+K+SGFV
Sbjct: 70  NVSGNAQCGNLLGIMGPSGSGKTTLMATISHRTKGNFEGELLLNGRPVSEEVMIKISGFV 129

Query: 76  PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGG 135
           PQHD+T + LT  EH+ LMA LKMDR          VD  +  LG+ +  ++ L++LSGG
Sbjct: 130 PQHDITFEQLTTLEHLYLMANLKMDRRTTKTALKARVDYTVITLGMREFLDTALSMLSGG 189

Query: 136 ERKRVALAVQ 145
           ERK+VALAVQ
Sbjct: 190 ERKKVALAVQ 199

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328712876|ref|XP_001942858.2| PREDICTED: protein scarlet-like [Acyrthosiphon pisum]

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 71/133 (53%), Positives = 92/133 (69%)

Query: 15  ESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGF 74
            ++SG  E G+LL IMGPSG+GKTTL+A IS R +G+ +G++LLNG  V +++M+K+SGF
Sbjct: 68  NNVSGNVECGTLLGIMGPSGSGKTTLMATISHRTKGNFNGELLLNGRSVSEDVMIKISGF 127

Query: 75  VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSG 134
           V Q D++   LTV E + LMA+LKMDR          +D L   LGL K  NS L  LSG
Sbjct: 128 VAQEDISFVQLTVLEQLKLMAKLKMDRTTSDKVIKDRIDYLAAHLGLNKIINSRLCFLSG 187

Query: 135 GERKRVALAVQTI 147
           GERK+VALAVQ I
Sbjct: 188 GERKKVALAVQLI 200

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321460546|gb|EFX71587.1| ABC protein, subfamily ABCG [Daphnia pulex]

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 64/141 (45%), Positives = 94/141 (66%), Gaps = 9/141 (6%)

Query: 16  SLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD--VDGQILLNGLEVEKNLMVKVSG 73
           S++G  + G  LAIMG SGAGKTTLL C++ R  G   ++G+  LNG EV  +++ ++SG
Sbjct: 11  SVTGCLQPGEFLAIMGASGAGKTTLLNCLTFRNAGKLKINGERYLNGAEVNTDILARISG 70

Query: 74  FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV-- 131
           FV Q DL + TLTV EH+   A L+MD++L + ER   VD ++ ELGL++C N+V+ +  
Sbjct: 71  FVQQDDLFIPTLTVKEHLQFQALLRMDKHLSYEERMNRVDNVILELGLIQCVNTVIGLPE 130

Query: 132 -----LSGGERKRVALAVQTI 147
                +SGGERKR+A A + +
Sbjct: 131 RDLKSISGGERKRLAFASEVL 151

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	212
FB|FBgn0000241	675	bw "brown" [Drosophila melanog	0.627	0.197	0.436	4.3e-25
UNIPROTKB|E3LWM9	654	Cre-wht-1 "CRE-WHT-1 protein"	0.622	0.201	0.432	8.9e-22
WB|WBGene00015479	598	wht-1 [Caenorhabditis elegans	0.622	0.220	0.425	2.5e-21
UNIPROTKB|Q11180	598	wht-1 "ABC transporter ATP-bin	0.622	0.220	0.425	2.5e-21
FB|FBgn0003996	687	w "white" [Drosophila melanoga	0.764	0.235	0.358	1.2e-20
DICTYBASE|DDB_G0282103	1159	abcG24 "ABC transporter G fami	0.811	0.148	0.336	2.8e-20
WB|WBGene00021535	684	wht-7 [Caenorhabditis elegans	0.792	0.245	0.323	4e-20
UNIPROTKB|A8XZE0	627	wht-1 "Protein CBR-WHT-1" [Cae	0.547	0.185	0.453	4.3e-20
TAIR|locus:2016089	662	ABCG25 "ATP-binding casette G2	0.617	0.197	0.391	6.2e-20
UNIPROTKB|E1BDU6	665	ABCG1 "Uncharacterized protein	0.660	0.210	0.4	2.2e-19

FB|FBgn0000241 bw "brown" [Drosophila melanogaster (taxid:7227)]

 Score = 294 (108.6 bits), Expect = 4.3e-25, P = 4.3e-25
 Identities = 58/133 (43%), Positives = 90/133 (67%)

Query:    15 ESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGF 74
             +  SG  ++G L+AI+G SGAGKTTLLA ISQR++G++ G ++LNG+ +E++ M ++S F
Sbjct:    50 QDASGHMKTGDLIAILGGSGAGKTTLLAAISQRLRGNLTGDVVLNGMAMERHQMTRISSF 109

Query:    75 VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSG 134
             +PQ ++ V T T +EH+  M+  KM R     E+ + V  LL  +GL    ++ +  LSG
Sbjct:   110 LPQFEINVKTFTAYEHLYFMSHFKMHRRTTKAEKRQRVADLLLAVGLRDAAHTRIQQLSG 169

Query:   135 GERKRVALAVQTI 147
             GERKR++LA + I
Sbjct:   170 GERKRLSLAEELI 182

GO:0006727 "ommochrome biosynthetic process" evidence=IMP

GO:0006856 "eye pigment precursor transport" evidence=TAS

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0005395 "eye pigment precursor transporter activity" evidence=NAS

GO:0006726 "eye pigment biosynthetic process" evidence=NAS

GO:0006728 "pteridine biosynthetic process" evidence=NAS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0006810 "transport" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IMP

UNIPROTKB|E3LWM9 Cre-wht-1 "CRE-WHT-1 protein" [Caenorhabditis remanei (taxid:31234)]

 Score = 263 (97.6 bits), Expect = 8.9e-22, P = 8.9e-22
 Identities = 61/141 (43%), Positives = 89/141 (63%)

Query:    16 SLSGIAESGSLLAIMGPSGAGKTTLLACISQR--IQGDVDGQILLNGLEVEKNLMVKVSG 73
             ++SG+AESG LLAIMG SGAGKTTL+  ++ R     DV G IL++G    K  + ++S 
Sbjct:    68 NVSGMAESGKLLAIMGSSGAGKTTLMNVLTSRNLTNLDVQGSILIDGKRANKWKIREMSA 127

Query:    74 FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART-VDALLKELGLLKCKNSVLNV- 131
             FV QHD+ V T+T  EH+  MARL+M    +  E   T V+ +L ++GL KC ++V+ + 
Sbjct:   128 FVQQHDMFVGTMTAREHLQFMARLRMGSEYYSEEERETRVNQVLTQMGLQKCADTVIGIP 187

Query:   132 -----LSGGERKRVALAVQTI 147
                  LS GE+KR+A A + +
Sbjct:   188 NQLKGLSCGEKKRLAFASEIL 208

GO:0016246 "RNA interference" evidence=ISS

WB|WBGene00015479 wht-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 258 (95.9 bits), Expect = 2.5e-21, P = 2.5e-21
 Identities = 60/141 (42%), Positives = 90/141 (63%)

Query:    16 SLSGIAESGSLLAIMGPSGAGKTTLLACISQR--IQGDVDGQILLNGLEVEKNLMVKVSG 73
             ++SG+AESG LLAI+G SGAGKTTL+  ++ R     DV G IL++G    K  + ++S 
Sbjct:    12 NVSGMAESGKLLAILGSSGAGKTTLMNVLTSRNLTNLDVQGSILIDGRRANKWKIREMSA 71

Query:    74 FVPQHDLTVDTLTVHEHMTLMARLKM-DRNLHHVERARTVDALLKELGLLKCKNSVLNV- 131
             FV QHD+ V T+T  EH+  MARL+M D+     ER   V+ +L ++GL KC ++V+ + 
Sbjct:    72 FVQQHDMFVGTMTAREHLQFMARLRMGDQYYSDHERQLRVEQVLTQMGLKKCADTVIGIP 131

Query:   132 -----LSGGERKRVALAVQTI 147
                  LS GE+KR++ A + +
Sbjct:   132 NQLKGLSCGEKKRLSFASEIL 152

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q11180 wht-1 "ABC transporter ATP-binding protein/permease wht-1" [Caenorhabditis elegans (taxid:6239)]

 Score = 258 (95.9 bits), Expect = 2.5e-21, P = 2.5e-21
 Identities = 60/141 (42%), Positives = 90/141 (63%)

Query:    16 SLSGIAESGSLLAIMGPSGAGKTTLLACISQR--IQGDVDGQILLNGLEVEKNLMVKVSG 73
             ++SG+AESG LLAI+G SGAGKTTL+  ++ R     DV G IL++G    K  + ++S 
Sbjct:    12 NVSGMAESGKLLAILGSSGAGKTTLMNVLTSRNLTNLDVQGSILIDGRRANKWKIREMSA 71

Query:    74 FVPQHDLTVDTLTVHEHMTLMARLKM-DRNLHHVERARTVDALLKELGLLKCKNSVLNV- 131
             FV QHD+ V T+T  EH+  MARL+M D+     ER   V+ +L ++GL KC ++V+ + 
Sbjct:    72 FVQQHDMFVGTMTAREHLQFMARLRMGDQYYSDHERQLRVEQVLTQMGLKKCADTVIGIP 131

Query:   132 -----LSGGERKRVALAVQTI 147
                  LS GE+KR++ A + +
Sbjct:   132 NQLKGLSCGEKKRLSFASEIL 152

GO:0016246 "RNA interference" evidence=IMP

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

FB|FBgn0003996 w "white" [Drosophila melanogaster (taxid:7227)]

 Score = 253 (94.1 bits), Expect = 1.2e-20, P = 1.2e-20
 Identities = 62/173 (35%), Positives = 98/173 (56%)

Query:    15 ESLSGIAESGSLLAIMGPSGAGKTTLLACIS----QRIQGDVDGQILLNGLEVEKNLMVK 70
             +++ G+A  G LLA+MG SGAGKTTLL  ++    Q IQ    G  LLNG  V+   M  
Sbjct:   114 KNVCGVAYPGELLAVMGSSGAGKTTLLNALAFRSPQGIQVSPSGMRLLNGQPVDAKEMQA 173

Query:    71 VSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLN 130
                +V Q DL + +LT  EH+   A ++M R+L + +R   VD +++EL L KC+++++ 
Sbjct:   174 RCAYVQQDDLFIGSLTAREHLIFQAMVRMPRHLTYRQRVARVDQVIQELSLSKCQHTIIG 233

Query:   131 V------LSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARL 176
             V      LSGGERKR+A A + +      +     + +D+ T H  + ++ +L
Sbjct:   234 VPGRVKGLSGGERKRLAFASEALTDPPLLICDEPTSGLDSFTAHSVVQVLKKL 286

GO:0006856 "eye pigment precursor transport" evidence=NAS;TAS

GO:0006727 "ommochrome biosynthetic process" evidence=IMP

GO:0042441 "eye pigment metabolic process" evidence=TAS

GO:0005395 "eye pigment precursor transporter activity" evidence=NAS

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006726 "eye pigment biosynthetic process" evidence=NAS

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0008049 "male courtship behavior" evidence=IMP

GO:0004888 "transmembrane signaling receptor activity" evidence=NAS

GO:0005524 "ATP binding" evidence=IEA

GO:0048072 "compound eye pigmentation" evidence=IMP

GO:0031410 "cytoplasmic vesicle" evidence=IDA

GO:0070731 "cGMP transport" evidence=IMP

GO:0007613 "memory" evidence=IMP

GO:0042401 "cellular biogenic amine biosynthetic process" evidence=IMP

DICTYBASE|DDB_G0282103 abcG24 "ABC transporter G family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 253 (94.1 bits), Expect = 2.8e-20, P = 2.8e-20
 Identities = 62/184 (33%), Positives = 109/184 (59%)

Query:    15 ESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ-GDVDGQILLNGLEVEKNLMVKVSG 73
             ++++G+   G L A+MG SG+GKT+LL  +S R   G++DG++L+NG  V KN   ++SG
Sbjct:   481 DNVNGVCPPGQLTALMGLSGSGKTSLLDILSGRKNVGNIDGKVLINGAPVGKNFK-RISG 539

Query:    74 FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV-- 131
             +V Q D+ + TLT  EH+   A LK+  N+    + + V ++L+ELGL +  ++ +    
Sbjct:   540 YVTQDDIQIGTLTCREHLMFAALLKLPENMSLEIKQQRVASVLEELGLTRVADNPIGTSE 599

Query:   132 ---LSGGERKRVALAVQTIIVQSG-FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER 187
                +SGGER+R+++A + I+  S  F+ +    +D+   H    L+ +LK   N +  + 
Sbjct:   600 KRGISGGERRRLSIATELIVDPSILFIDEPTSGLDS---HSASELITKLKQLAN-NSTKG 655

Query:   188 ARTV 191
              RT+
Sbjct:   656 QRTI 659

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006200 "ATP catabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

WB|WBGene00021535 wht-7 [Caenorhabditis elegans (taxid:6239)]

 Score = 248 (92.4 bits), Expect = 4.0e-20, P = 4.0e-20
 Identities = 57/176 (32%), Positives = 102/176 (57%)

Query:    15 ESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVD--GQILLNGLEVEKNLMVKVS 72
             +S+ G+A  G + AI+GPSGAGKTTLL  +++R   ++   G + +NG+  E++ M +V 
Sbjct:    83 DSVFGVARPGEVTAIIGPSGAGKTTLLNVLTKRNLSNLKATGSVKVNGIRAERSYMRQVC 142

Query:    73 GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV- 131
              +V Q D  + +LTV EH+  MA+LKM       E+ R V ++++ LGL K  +S++   
Sbjct:   143 AYVQQDDCFIGSLTVEEHLKFMAKLKMGSEYDLNEQERRVKSVMRSLGLEKIADSIIGTR 202

Query:   132 ----LSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDRNL 182
                 +SGGE+KR+A A + +      +     + +D+   ++ + ++ +L   RN+
Sbjct:   203 TRKGISGGEKKRLAFASEILTSPPILICDEPTSGLDSFLAYQVVCVLKKLAETRNM 258

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|A8XZE0 wht-1 "Protein CBR-WHT-1" [Caenorhabditis briggsae (taxid:6238)]

 Score = 247 (92.0 bits), Expect = 4.3e-20, P = 4.3e-20
 Identities = 54/119 (45%), Positives = 77/119 (64%)

Query:    16 SLSGIAESGSLLAIMGPSGAGKTTLLACISQR--IQGDVDGQILLNGLEVEKNLMVKVSG 73
             ++SG+AESG LLAIMG SGAGKTTLL  ++ R     DV G IL++G    +  + ++S 
Sbjct:    68 NVSGMAESGKLLAIMGSSGAGKTTLLNVLTSRSLTNLDVQGSILIDGKRANRWKIREMSA 127

Query:    74 FVPQHDLTVDTLTVHEHMTLMARLKMDRNLH-HVERARTVDALLKELGLLKCKNSVLNV 131
             FV QHD+ V T+T  EH+  MARL+M    +   ER   VD +L ++GL KC ++V+ +
Sbjct:   128 FVQQHDMFVGTMTAREHLQFMARLRMGSEYYSEEERESRVDQVLTQMGLQKCADTVIGI 186

GO:0016246 "RNA interference" evidence=ISS

TAIR|locus:2016089 ABCG25 "ATP-binding casette G25" [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 6.2e-20, P = 6.2e-20
 Identities = 54/138 (39%), Positives = 91/138 (65%)

Query:    17 LSGIAESGSLLAIMGPSGAGKTTLLACISQRIQG-DVDGQILLNGLEVEKNLMVKVSGFV 75
             ++G+   G  +A++GPSG+GK+TLL  ++ R+ G ++ G+IL+N  ++ K  + K +GFV
Sbjct:    87 VTGMISPGEFMAVLGPSGSGKSTLLNAVAGRLHGSNLTGKILINDGKITKQTL-KRTGFV 145

Query:    76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVL-NV--- 131
              Q DL    LTV E +  +A L++ R+L    + R  ++++ ELGL KC+N+V+ N    
Sbjct:   146 AQDDLLYPHLTVRETLVFVALLRLPRSLTRDVKLRAAESVISELGLTKCENTVVGNTFIR 205

Query:   132 -LSGGERKRVALAVQTII 148
              +SGGERKRV++A + +I
Sbjct:   206 GISGGERKRVSIAHELLI 223

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0080168 "abscisic acid transport" evidence=IDA

UNIPROTKB|E1BDU6 ABCG1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 241 (89.9 bits), Expect = 2.2e-19, P = 2.2e-19
 Identities = 58/145 (40%), Positives = 84/145 (57%)

Query:     6 PLFGDTNYKESLSGIA---ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLE 62
             P +    YK  L GI+    SG L+AIMGPSGAGK+TL+  ++   +  + G++L+NGL 
Sbjct:    89 PWWRKKGYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETGMKGEVLINGLP 148

Query:    63 VEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL 122
              +     KVS ++ Q DL +  LTV E M + A LK+        R   V  +L  LGLL
Sbjct:   149 RDLRCFRKVSCYIMQDDLLLPHLTVQEAMMVSAHLKLQEK--DEGRREMVKEILTALGLL 206

Query:   123 KCKNSVLNVLSGGERKRVALAVQTI 147
              C N+    LSGG+RKR+A+A++ +
Sbjct:   207 SCANTRTGSLSGGQRKRLAIALELV 231

GO:0055099 "response to high density lipoprotein particle stimulus" evidence=IEA

GO:0055091 "phospholipid homeostasis" evidence=IEA

GO:0055037 "recycling endosome" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0045542 "positive regulation of cholesterol biosynthetic process" evidence=IEA

GO:0043691 "reverse cholesterol transport" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042987 "amyloid precursor protein catabolic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042632 "cholesterol homeostasis" evidence=IEA

GO:0034437 "glycoprotein transporter activity" evidence=IEA

GO:0034436 "glycoprotein transport" evidence=IEA

GO:0034375 "high-density lipoprotein particle remodeling" evidence=IEA

GO:0034374 "low-density lipoprotein particle remodeling" evidence=IEA

GO:0034041 "sterol-transporting ATPase activity" evidence=IEA

GO:0033993 "response to lipid" evidence=IEA

GO:0033700 "phospholipid efflux" evidence=IEA

GO:0033344 "cholesterol efflux" evidence=IEA

GO:0032367 "intracellular cholesterol transport" evidence=IEA

GO:0019534 "toxin transporter activity" evidence=IEA

GO:0017127 "cholesterol transporter activity" evidence=IEA

GO:0010888 "negative regulation of lipid storage" evidence=IEA

GO:0010875 "positive regulation of cholesterol efflux" evidence=IEA

GO:0010872 "regulation of cholesterol esterification" evidence=IEA

GO:0009897 "external side of plasma membrane" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005548 "phospholipid transporter activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	212
TIGR00955	617	TIGR00955, 3a01204, The Eye Pigment Precursor Tran	2e-45
cd03234	226	cd03234, ABCG_White, White pigment protein homolog	4e-34
PLN03211	659	PLN03211, PLN03211, ABC transporter G-25; Provisio	2e-26
cd03213	194	cd03213, ABCG_EPDR, Eye pigment and drug resistanc	3e-26
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	9e-25
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	3e-23
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	6e-19
cd03232	192	cd03232, ABCG_PDR_domain2, Second domain of the pl	3e-18
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	4e-17
COG1136	226	COG1136, SalX, ABC-type antimicrobial peptide tran	6e-17
COG1121	254	COG1121, ZnuC, ABC-type Mn/Zn transport systems, A	7e-17
cd03235	213	cd03235, ABC_Metallic_Cations, ATP-binding cassett	2e-16
TIGR02315	243	TIGR02315, ABC_phnC, phosphonate ABC transporter,	2e-16
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	4e-16
cd03264	211	cd03264, ABC_drug_resistance_like, ABC-type multid	2e-15
TIGR00968	237	TIGR00968, 3a0106s01, sulfate ABC transporter, ATP	3e-15
cd03296	239	cd03296, ABC_CysA_sulfate_importer, ATP-binding ca	7e-15
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	3e-14
cd03255	218	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse	3e-14
COG1137	243	COG1137, YhbG, ABC-type (unclassified) transport s	7e-14
TIGR00955	617	TIGR00955, 3a01204, The Eye Pigment Precursor Tran	1e-13
cd03256	241	cd03256, ABC_PhnC_transporter, ATP-binding cassett	2e-13
cd03259	213	cd03259, ABC_Carb_Solutes_like, ATP-binding casset	2e-13
cd03262	213	cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai	2e-13
PRK13548	258	PRK13548, hmuV, hemin importer ATP-binding subunit	2e-13
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	2e-13
cd03218	232	cd03218, ABC_YhbG, ATP-binding cassette component	3e-13
TIGR03608	206	TIGR03608, L_ocin_972_ABC, putative bacteriocin ex	4e-13
COG3638	258	COG3638, COG3638, ABC-type phosphate/phosphonate t	5e-13
COG3839	338	COG3839, MalK, ABC-type sugar transport systems, A	8e-13
COG1118	345	COG1118, CysA, ABC-type sulfate/molybdate transpor	1e-12
cd03297	214	cd03297, ABC_ModC_molybdenum_transporter, ATP-bind	4e-12
cd03293	220	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c	4e-12
COG1127	263	COG1127, Ttg2A, ABC-type transport system involved	9e-12
cd03233	202	cd03233, ABCG_PDR_domain1, First domain of the ple	1e-11
cd03261	235	cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca	1e-11
COG1116	248	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon	2e-11
COG1126	240	COG1126, GlnQ, ABC-type polar amino acid transport	2e-11
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	8e-11
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	1e-10
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	1e-10
PRK11231	255	PRK11231, fecE, iron-dicitrate transporter ATP-bin	2e-10
COG3842	352	COG3842, PotA, ABC-type spermidine/putrescine tran	2e-10
COG2884	223	COG2884, FtsE, Predicted ATPase involved in cell d	2e-10
cd03299	235	cd03299, ABC_ModC_like, ATP-binding cassette domai	2e-10
cd03265	220	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist	3e-10
cd03226	205	cd03226, ABC_cobalt_CbiO_domain2, Second domain of	3e-10
COG1124	252	COG1124, DppF, ABC-type dipeptide/oligopeptide/nic	5e-10
COG4555	245	COG4555, NatA, ABC-type Na+ transport system, ATPa	6e-10
pfam00005	119	pfam00005, ABC_tran, ABC transporter	6e-10
COG4136	213	COG4136, COG4136, ABC-type uncharacterized transpo	7e-10
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	8e-10
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	8e-10
PRK10584	228	PRK10584, PRK10584, putative ABC transporter ATP-b	1e-09
COG4525	259	COG4525, TauB, ABC-type taurine transport system,	1e-09
cd03269	210	cd03269, ABC_putative_ATPase, ATP-binding cassette	1e-09
PRK10895	241	PRK10895, PRK10895, lipopolysaccharide ABC transpo	2e-09
cd03219	236	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas	2e-09
cd03292	214	cd03292, ABC_FtsE_transporter, ATP-binding cassett	3e-09
COG3840	231	COG3840, ThiQ, ABC-type thiamine transport system,	4e-09
COG1122	235	COG1122, CbiO, ABC-type cobalt transport system, A	5e-09
TIGR03771	223	TIGR03771, anch_rpt_ABC, anchored repeat-type ABC	6e-09
TIGR01188	302	TIGR01188, drrA, daunorubicin resistance ABC trans	7e-09
COG4559	259	COG4559, COG4559, ABC-type hemin transport system,	8e-09
COG4181	228	COG4181, COG4181, Predicted ABC-type transport sys	8e-09
cd03260	227	cd03260, ABC_PstB_phosphate_transporter, ATP-bindi	9e-09
COG4604	252	COG4604, CeuD, ABC-type enterochelin transport sys	1e-08
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	1e-08
TIGR02857	529	TIGR02857, CydD, thiol reductant ABC exporter, Cyd	1e-08
TIGR03522	301	TIGR03522, GldA_ABC_ATP, gliding motility-associat	1e-08
COG1135	339	COG1135, AbcC, ABC-type metal ion transport system	1e-08
TIGR02673	214	TIGR02673, FtsE, cell division ATP-binding protein	1e-08
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	2e-08
PRK14250	241	PRK14250, PRK14250, phosphate ABC transporter ATP-	2e-08
cd03257	228	cd03257, ABC_NikE_OppD_transporters, ATP-binding c	2e-08
TIGR03265	353	TIGR03265, PhnT2, putative 2-aminoethylphosphonate	2e-08
cd03300	232	cd03300, ABC_PotA_N, ATP-binding cassette domain o	2e-08
COG4988	559	COG4988, CydD, ABC-type transport system involved	2e-08
PRK13639	275	PRK13639, cbiO, cobalt transporter ATP-binding sub	2e-08
COG0411	250	COG0411, LivG, ABC-type branched-chain amino acid	3e-08
COG1125	309	COG1125, OpuBA, ABC-type proline/glycine betaine t	3e-08
TIGR01277	213	TIGR01277, thiQ, thiamine ABC transporter, ATP-bin	3e-08
cd03224	222	cd03224, ABC_TM1139_LivF_branched, ATP-binding cas	4e-08
COG1123	539	COG1123, COG1123, ATPase components of various ABC	5e-08
COG4148	352	COG4148, ModC, ABC-type molybdate transport system	6e-08
PRK10253	265	PRK10253, PRK10253, iron-enterobactin transporter	7e-08
cd03298	211	cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin	8e-08
cd03301	213	cd03301, ABC_MalK_N, The N-terminal ATPase domain	8e-08
PRK11264	250	PRK11264, PRK11264, putative amino-acid ABC transp	9e-08
COG0410	237	COG0410, LivF, ABC-type branched-chain amino acid	1e-07
cd03258	233	cd03258, ABC_MetN_methionine_transporter, ATP-bind	1e-07
PRK13539	207	PRK13539, PRK13539, cytochrome c biogenesis protei	1e-07
TIGR01192	585	TIGR01192, chvA, glucan exporter ATP-binding prote	1e-07
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	2e-07
cd03266	218	cd03266, ABC_NatA_sodium_exporter, ATP-binding cas	2e-07
PRK09452	375	PRK09452, potA, putrescine/spermidine ABC transpor	2e-07
PRK09536	402	PRK09536, btuD, corrinoid ABC transporter ATPase;	2e-07
cd03229	178	cd03229, ABC_Class3, ATP-binding cassette domain o	2e-07
TIGR02982	220	TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi	2e-07
PRK13652	277	PRK13652, cbiO, cobalt transporter ATP-binding sub	2e-07
PRK10851	353	PRK10851, PRK10851, sulfate/thiosulfate transporte	2e-07
COG4152	300	COG4152, COG4152, ABC-type uncharacterized transpo	2e-07
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	3e-07
COG1123	539	COG1123, COG1123, ATPase components of various ABC	4e-07
TIGR03258	362	TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans	4e-07
TIGR01187	325	TIGR01187, potA, spermidine/putrescine ABC transpo	6e-07
cd03254	229	cd03254, ABCC_Glucan_exporter_like, ATP-binding ca	6e-07
TIGR02868	530	TIGR02868, CydC, thiol reductant ABC exporter, Cyd	6e-07
TIGR02142	354	TIGR02142, modC_ABC, molybdenum ABC transporter, A	6e-07
PRK10771	232	PRK10771, thiQ, thiamine transporter ATP-binding s	7e-07
COG1101	263	COG1101, PhnK, ABC-type uncharacterized transport	7e-07
PRK11831	269	PRK11831, PRK11831, putative ABC transporter ATP-b	8e-07
PRK11248	255	PRK11248, tauB, taurine transporter ATP-binding su	1e-06
COG4138	248	COG4138, BtuD, ABC-type cobalamin transport system	1e-06
PRK09493	240	PRK09493, glnQ, glutamine ABC transporter ATP-bind	1e-06
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	1e-06
COG4598	256	COG4598, HisP, ABC-type histidine transport system	2e-06
TIGR02211	221	TIGR02211, LolD_lipo_ex, lipoprotein releasing sys	2e-06
PRK13538	204	PRK13538, PRK13538, cytochrome c biogenesis protei	2e-06
TIGR02203	571	TIGR02203, MsbA_lipidA, lipid A export permease/AT	2e-06
cd03294	269	cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette	2e-06
cd03246	173	cd03246, ABCC_Protease_Secretion, ATP-binding cass	3e-06
PRK03695	248	PRK03695, PRK03695, vitamin B12-transporter ATPase	3e-06
TIGR02314	343	TIGR02314, ABC_MetN, D-methionine ABC transporter,	3e-06
TIGR01189	198	TIGR01189, ccmA, heme ABC exporter, ATP-binding pr	3e-06
cd03268	208	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c	4e-06
COG0396	251	COG0396, sufC, Cysteine desulfurase activator ATPa	4e-06
cd03295	242	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas	4e-06
COG4175	386	COG4175, ProV, ABC-type proline/glycine betaine tr	4e-06
TIGR03410	230	TIGR03410, urea_trans_UrtE, urea ABC transporter,	4e-06
PRK11432	351	PRK11432, fbpC, ferric transporter ATP-binding sub	6e-06
COG4619	223	COG4619, COG4619, ABC-type uncharacterized transpo	8e-06
PRK10070	400	PRK10070, PRK10070, glycine betaine transporter AT	8e-06
TIGR02204	576	TIGR02204, MsbA_rel, ABC transporter, permease/ATP	9e-06
TIGR01186	363	TIGR01186, proV, glycine betaine/L-proline transpo	1e-05
TIGR01166	190	TIGR01166, cbiO, cobalt transport protein ATP-bind	1e-05
PRK11607	377	PRK11607, potG, putrescine transporter ATP-binding	1e-05
TIGR00972	247	TIGR00972, 3a0107s01c2, phosphate ABC transporter,	1e-05
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	2e-05
PRK14246	257	PRK14246, PRK14246, phosphate ABC transporter ATP-	2e-05
PRK13636	283	PRK13636, cbiO, cobalt transporter ATP-binding sub	2e-05
TIGR01842	544	TIGR01842, type_I_sec_PrtD, type I secretion syste	2e-05
PRK09984	262	PRK09984, PRK09984, phosphonate/organophosphate es	2e-05
PRK15056	272	PRK15056, PRK15056, manganese/iron transporter ATP	2e-05
COG4987	573	COG4987, CydC, ABC-type transport system involved	2e-05
COG0444	316	COG0444, DppD, ABC-type dipeptide/oligopeptide/nic	3e-05
PLN03211	659	PLN03211, PLN03211, ABC transporter G-25; Provisio	4e-05
PRK14256	252	PRK14256, PRK14256, phosphate ABC transporter ATP-	4e-05
COG1117	253	COG1117, PstB, ABC-type phosphate transport system	5e-05
PRK14262	250	PRK14262, PRK14262, phosphate ABC transporter ATP-	5e-05
TIGR03873	256	TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra	5e-05
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	7e-05
cd03231	201	cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog	8e-05
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	1e-04
COG2274	709	COG2274, SunT, ABC-type bacteriocin/lantibiotic ex	1e-04
smart00382	148	smart00382, AAA, ATPases associated with a variety	1e-04
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	2e-04
TIGR01288	303	TIGR01288, nodI, ATP-binding ABC transporter famil	2e-04
PRK10575	265	PRK10575, PRK10575, iron-hydroxamate transporter A	2e-04
COG4608	268	COG4608, AppF, ABC-type oligopeptide transport sys	2e-04
PRK15064	530	PRK15064, PRK15064, ABC transporter ATP-binding pr	2e-04
PRK14237	267	PRK14237, PRK14237, phosphate transporter ATP-bind	2e-04
TIGR03864	236	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi	2e-04
PRK13657	588	PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra	2e-04
COG4107	258	COG4107, PhnK, ABC-type phosphonate transport syst	2e-04
cd03252	237	cd03252, ABCC_Hemolysin, ATP-binding cassette doma	2e-04
cd03247	178	cd03247, ABCC_cytochrome_bd, ATP-binding cassette	3e-04
PRK14247	250	PRK14247, PRK14247, phosphate ABC transporter ATP-	4e-04
TIGR01184	230	TIGR01184, ntrCD, nitrate transport ATP-binding su	4e-04
PRK13647	274	PRK13647, cbiO, cobalt transporter ATP-binding sub	5e-04
cd03249	238	cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett	6e-04
PRK11701	258	PRK11701, phnK, phosphonate C-P lyase system prote	7e-04
PRK11629	233	PRK11629, lolD, lipoprotein transporter ATP-bindin	7e-04
PRK14272	252	PRK14272, PRK14272, phosphate ABC transporter ATP-	7e-04
cd03253	236	cd03253, ABCC_ATM1_transporter, ATP-binding casset	7e-04
TIGR03740	223	TIGR03740, galliderm_ABC, gallidermin-class lantib	7e-04
COG5265	497	COG5265, ATM1, ABC-type transport system involved	8e-04
cd03237	246	cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin	9e-04
cd03251	234	cd03251, ABCC_MsbA, ATP-binding cassette domain of	9e-04
cd03234	226	cd03234, ABCG_White, White pigment protein homolog	0.001
TIGR03005	252	TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB	0.001
COG4133	209	COG4133, CcmA, ABC-type transport system involved	0.001
PRK13536	340	PRK13536, PRK13536, nodulation factor exporter sub	0.001
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	0.001
PRK14270	251	PRK14270, PRK14270, phosphate ABC transporter ATP-	0.001
TIGR03415	382	TIGR03415, ABC_choXWV_ATP, choline ABC transporter	0.001
PRK10619	257	PRK10619, PRK10619, histidine/lysine/arginine/orni	0.001
TIGR03411	242	TIGR03411, urea_trans_UrtD, urea ABC transporter,	0.001
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	0.001
COG4674	249	COG4674, COG4674, Uncharacterized ABC-type transpo	0.001
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	0.002
TIGR02323	253	TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys	0.002
PRK10789	569	PRK10789, PRK10789, putative multidrug transporter	0.002
PRK14264	305	PRK14264, PRK14264, phosphate ABC transporter ATP-	0.002
cd03216	163	cd03216, ABC_Carb_Monos_I, First domain of the ATP	0.002
PRK11819	556	PRK11819, PRK11819, putative ABC transporter ATP-b	0.002
PRK10535	648	PRK10535, PRK10535, macrolide transporter ATP-bind	0.002
TIGR02322	179	TIGR02322, phosphon_PhnN, phosphonate metabolism p	0.002
COG2401	593	COG2401, COG2401, ABC-type ATPase fused to a predi	0.003
PRK14251	251	PRK14251, PRK14251, phosphate ABC transporter ATP-	0.003
cd03245	220	cd03245, ABCC_bacteriocin_exporters, ATP-binding c	0.003
PLN03130	1622	PLN03130, PLN03130, ABC transporter C family membe	0.003
PRK14236	272	PRK14236, PRK14236, phosphate transporter ATP-bind	0.003
PRK13549	506	PRK13549, PRK13549, xylose transporter ATP-binding	0.003
PRK14269	246	PRK14269, PRK14269, phosphate ABC transporter ATP-	0.004
PRK13543	214	PRK13543, PRK13543, cytochrome c biogenesis protei	0.004
TIGR01193	708	TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t	0.004

>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein

 Score =  158 bits (401), Expect = 2e-45
 Identities = 61/140 (43%), Positives = 87/140 (62%), Gaps = 8/140 (5%)

Query: 16  SLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQ--ILLNGLEVEKNLMVKVSG 73
           ++SG+A+ G LLA+MG SGAGKTTL+  ++ R    V G   +LLNG+ ++   M  +S 
Sbjct: 43  NVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISA 102

Query: 74  FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV-- 131
           +V Q DL + TLTV EH+   A L+M R +   E+   VD +L+ LGL KC N+ + V  
Sbjct: 103 YVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPG 162

Query: 132 ----LSGGERKRVALAVQTI 147
               LSGGERKR+A A + +
Sbjct: 163 RVKGLSGGERKRLAFASELL 182

[Transport and binding proteins, Other]. Length = 617

>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily

 Score =  120 bits (304), Expect = 4e-34
 Identities = 59/167 (35%), Positives = 93/167 (55%), Gaps = 10/167 (5%)

Query: 17  LSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD--VDGQILLNGLEVEKNLMVKVSGF 74
           +S   ESG ++AI+G SG+GKTTLL  IS R++G     GQIL NG   + +   K   +
Sbjct: 26  VSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAY 85

Query: 75  VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER-ARTVDALLKELGLLKCKNSVLNVLS 133
           V Q D+ +  LTV E +T  A L++ R      R  R  D LL++L L +   +++  +S
Sbjct: 86  VRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGIS 145

Query: 134 GGERKRVALAVQTIIVQSGFV----PQHDLTVDTLTVHEHMTLMARL 176
           GGER+RV++AVQ ++     +    P   L  D+ T    ++ +++L
Sbjct: 146 GGERRRVSIAVQ-LLWDPKVLILDEPTSGL--DSFTALNLVSTLSQL 189

The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226

>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional

 Score =  105 bits (264), Expect = 2e-26
 Identities = 53/138 (38%), Positives = 89/138 (64%), Gaps = 7/138 (5%)

Query: 17  LSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD-VDGQILLNGLEVEKNLMVKVSGFV 75
           ++G+A  G +LA++GPSG+GK+TLL  ++ RIQG+   G IL N  +  K ++ K +GFV
Sbjct: 87  VTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQIL-KRTGFV 145

Query: 76  PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV---- 131
            Q D+    LTV E +   + L++ ++L   E+    ++++ ELGL KC+N+++      
Sbjct: 146 TQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIR 205

Query: 132 -LSGGERKRVALAVQTII 148
            +SGGERKRV++A + +I
Sbjct: 206 GISGGERKRVSIAHEMLI 223

Length = 659

>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily

 Score = 99.5 bits (249), Expect = 3e-26
 Identities = 48/133 (36%), Positives = 71/133 (53%), Gaps = 33/133 (24%)

Query: 16  SLSGIAESGSLLAIMGPSGAGKTTLLACIS-QRIQGDVDGQILLNGLEVEKNLMVKVSGF 74
           ++SG A+ G L AIMGPSGAGK+TLL  ++ +R    V G++L+NG  ++K    K+ G+
Sbjct: 27  NVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGY 86

Query: 75  VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSG 134
           VPQ D+   TLTV E +   A+L+                                 LSG
Sbjct: 87  VPQDDILHPTLTVRETLMFAAKLR--------------------------------GLSG 114

Query: 135 GERKRVALAVQTI 147
           GERKRV++A++ +
Sbjct: 115 GERKRVSIALELV 127

ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score = 98.1 bits (245), Expect = 9e-25
 Identities = 45/138 (32%), Positives = 72/138 (52%), Gaps = 9/138 (6%)

Query: 12  NYKESLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLM 68
             K +L G+    E G +  ++GP+GAGKTTLL  ++  ++    G+IL+ G +V K   
Sbjct: 16  GDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT-SGEILVLGYDVVKEPA 74

Query: 69  V--KVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKN 126
              +  G+VPQ       LTV E++   ARL         ER   ++ LL+  GL    N
Sbjct: 75  KVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEER---IEELLELFGLEDKAN 131

Query: 127 SVLNVLSGGERKRVALAV 144
             +  LSGG ++R+++A+
Sbjct: 132 KKVRTLSGGMKQRLSIAL 149

Length = 293

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score = 92.2 bits (230), Expect = 3e-23
 Identities = 42/127 (33%), Positives = 63/127 (49%), Gaps = 8/127 (6%)

Query: 24  GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS---GFVPQHDL 80
           G +  ++G +GAGKTT L  ++  ++    G   +NG  +  +         G+ PQ D 
Sbjct: 28  GEIFGLLGHNGAGKTTTLKMLTGELRPTS-GTAYINGYSIRTD-RKAARQSLGYCPQFDA 85

Query: 81  TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRV 140
             D LTV EH+   ARLK    L   E    V+ LL+ LGL    N     LSGG ++++
Sbjct: 86  LFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKL 142

Query: 141 ALAVQTI 147
           +LA+  I
Sbjct: 143 SLAIALI 149

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 84.0 bits (208), Expect = 6e-19
 Identities = 43/134 (32%), Positives = 75/134 (55%), Gaps = 7/134 (5%)

Query: 18  SGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDV--DGQILLNGLEVEKNLMVKVSGFV 75
            G  + G+L A+MG SGAGKTTLL  +++R+   V   G  L+NG  ++ +   +  G+V
Sbjct: 783 DGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQ-RSIGYV 841

Query: 76  PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV---- 131
            Q DL + T TV E +   A L+  +++   E+   V+ ++K L +    ++V+ V    
Sbjct: 842 QQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEG 901

Query: 132 LSGGERKRVALAVQ 145
           L+  +RKR+ + V+
Sbjct: 902 LNVEQRKRLTIGVE 915

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters

 Score = 78.4 bits (194), Expect = 3e-18
 Identities = 39/95 (41%), Positives = 55/95 (57%), Gaps = 5/95 (5%)

Query: 18  SGIAESGSLLAIMGPSGAGKTTLLACISQR-IQGDVDGQILLNGLEVEKNLMVKVSGFVP 76
           SG  + G+L A+MG SGAGKTTLL  ++ R   G + G+IL+NG  ++KN   + +G+V 
Sbjct: 27  SGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQ-RSTGYVE 85

Query: 77  QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 111
           Q D+    LTV E +   A L   R L   +R R 
Sbjct: 86  QQDVHSPNLTVREALRFSALL---RGLSVEQRKRL 117

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score = 76.8 bits (190), Expect = 4e-17
 Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 22/145 (15%)

Query: 14  KESLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE----KN 66
           K  L  +      G +  I+GP+G+GK+TLL C++  +     G++LL+G ++     K 
Sbjct: 15  KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLA-GLLKPKSGEVLLDGKDIASLSPKE 73

Query: 67  LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHH-------VERARTVDALLKEL 119
           L  K+  +VPQ       LTV+E + L+ R       H         E    V+  L+ L
Sbjct: 74  LAKKL-AYVPQSPSAPFGLTVYE-LVLLGRYP-----HLGLFGRPSKEDEEIVEEALELL 126

Query: 120 GLLKCKNSVLNVLSGGERKRVALAV 144
           GL    +  ++ LSGGER+RV +A 
Sbjct: 127 GLEHLADRPVDELSGGERQRVLIAR 151

Length = 258

>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 75.6 bits (187), Expect = 6e-17
 Identities = 45/144 (31%), Positives = 73/144 (50%), Gaps = 17/144 (11%)

Query: 12  NYKESLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK--- 65
              E+L  +    E+G  +AI+GPSG+GK+TLL  +    +    G++L+NG ++ K   
Sbjct: 16  EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT-SGEVLINGKDLTKLSE 74

Query: 66  NLMVKVS----GFVPQ-HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELG 120
             + K+     GFV Q  +L +  LTV E++ L   +           A   + LL+ LG
Sbjct: 75  KELAKLRRKKIGFVFQNFNL-LPDLTVLENVELPLLIAGKSAGRRKRAA---EELLEVLG 130

Query: 121 LLKCKNSVL-NVLSGGERKRVALA 143
           L         + LSGG+++RVA+A
Sbjct: 131 LEDRLLKKKPSELSGGQQQRVAIA 154

Length = 226

>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 76.1 bits (188), Expect = 7e-17
 Identities = 42/140 (30%), Positives = 71/140 (50%), Gaps = 11/140 (7%)

Query: 12  NYKESLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLM 68
             +  L  I    E G + A++GP+GAGK+TLL  I   ++    G+I + G  V K   
Sbjct: 15  GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK-PSSGEIKIFGKPVRKRRK 73

Query: 69  VKVSGFVPQHDLTVDT---LTVHE--HMTLMARLKMDRNLHHVERARTVDALLKELGLLK 123
               G+VPQ   +VD    +TV +   +    +    R L+  ++ + VD  L+ +G+  
Sbjct: 74  RLRIGYVPQK-SSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEK-VDEALERVGMED 131

Query: 124 CKNSVLNVLSGGERKRVALA 143
            ++  +  LSGG+++RV LA
Sbjct: 132 LRDRQIGELSGGQKQRVLLA 151

Length = 254

>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters

 Score = 74.1 bits (183), Expect = 2e-16
 Identities = 47/137 (34%), Positives = 73/137 (53%), Gaps = 16/137 (11%)

Query: 15  ESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVD---GQILLNGLEVEKNLMVKV 71
           E +S   + G  LAI+GP+GAGK+TLL      I G +    G I + G  +EK    K 
Sbjct: 16  EDVSFEVKPGEFLAIVGPNGAGKSTLLKA----ILGLLKPTSGSIRVFGKPLEK--ERKR 69

Query: 72  SGFVPQHDLTVDT---LTVHE--HMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKN 126
            G+VPQ   ++D    ++V +   M L     + R L   ++A+ VD  L+ +GL +  +
Sbjct: 70  IGYVPQR-RSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAK-VDEALERVGLSELAD 127

Query: 127 SVLNVLSGGERKRVALA 143
             +  LSGG+++RV LA
Sbjct: 128 RQIGELSGGQQQRVLLA 144

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213

>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein

 Score = 74.3 bits (183), Expect = 2e-16
 Identities = 56/196 (28%), Positives = 90/196 (45%), Gaps = 37/196 (18%)

Query: 21  AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV------EKNLMVKVSGF 74
              G  +AI+GPSGAGK+TLL CI+ R+     G ILL G ++      +   + +  G 
Sbjct: 25  INPGEFVAIIGPSGAGKSTLLRCIN-RLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGM 83

Query: 75  VPQHDLTVDTLTVHEHMTLMARL-------KMDRNLHHVERARTVDALLKELGLLKCKNS 127
           + QH   ++ LTV E++ L  RL        +       ++ R + A L+ +GL      
Sbjct: 84  IFQHYNLIERLTVLENV-LHGRLGYKPTWRSLLGRFSEEDKERALSA-LERVGLADKAYQ 141

Query: 128 VLNVLSGGERKRVALAVQTIIVQSGFVPQHDL--------TVDTLTVHEHMTLMARLKMD 179
             + LSGG+++RVA+A            Q DL        ++D  T  + M  + R+  +
Sbjct: 142 RADQLSGGQQQRVAIA-------RALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKE 194

Query: 180 R------NLHHVERAR 189
                  NLH V+ A+
Sbjct: 195 DGITVIINLHQVDLAK 210

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score = 73.3 bits (181), Expect = 4e-16
 Identities = 33/132 (25%), Positives = 65/132 (49%), Gaps = 20/132 (15%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS---GFVPQH 78
           + G  + I+GP+G+GK+TLL  ++  + G   G++L++G ++ K  + ++    G V Q+
Sbjct: 25  KKGEFVLIVGPNGSGKSTLLRLLN-GLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQN 83

Query: 79  DLTVDTLTVHEHMTLMARLKMD-----RNLH--HVERARTVDALLKELGLLKCKNSVLNV 131
                     +       ++ +      NL     E    V+  L+ +GL   ++     
Sbjct: 84  P---------DDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFT 134

Query: 132 LSGGERKRVALA 143
           LSGG+++RVA+A
Sbjct: 135 LSGGQKQRVAIA 146

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component

 Score = 71.5 bits (176), Expect = 2e-15
 Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 7/130 (5%)

Query: 16  SLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMV--KVSG 73
            +S     G +  ++GP+GAGKTTL+  ++  +     G I ++G +V K      +  G
Sbjct: 18  GVSLTLGPG-MYGLLGPNGAGKTTLMRILAT-LTPPSSGTIRIDGQDVLKQPQKLRRRIG 75

Query: 74  FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLS 133
           ++PQ        TV E +  +A LK    +   E    VD +L+ + L       +  LS
Sbjct: 76  YLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKKIGSLS 132

Query: 134 GGERKRVALA 143
           GG R+RV +A
Sbjct: 133 GGMRRRVGIA 142

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein

 Score = 71.4 bits (175), Expect = 3e-15
 Identities = 49/137 (35%), Positives = 78/137 (56%), Gaps = 5/137 (3%)

Query: 8   FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-N 66
           FG     + ++    +GSL+A++GPSG+GK+TLL  I+   Q D  G+I LNG +  + +
Sbjct: 10  FGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD-SGRIRLNGQDATRVH 68

Query: 67  LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKN 126
              +  GFV QH      LTV +++     L++ ++     +AR V+ LL+ + L    +
Sbjct: 69  ARDRKIGFVFQHYALFKHLTVRDNIAF--GLEIRKHPKAKIKAR-VEELLELVQLEGLGD 125

Query: 127 SVLNVLSGGERKRVALA 143
              N LSGG+R+RVALA
Sbjct: 126 RYPNQLSGGQRQRVALA 142

[Transport and binding proteins, Anions]. Length = 237

>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter

 Score = 70.4 bits (173), Expect = 7e-15
 Identities = 49/138 (35%), Positives = 70/138 (50%), Gaps = 3/138 (2%)

Query: 8   FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV-EKN 66
           FGD    + +S    SG L+A++GPSG+GKTTLL  I+   + D  G IL  G +  +  
Sbjct: 12  FGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD-SGTILFGGEDATDVP 70

Query: 67  LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLK-MDRNLHHVERARTVDALLKELGLLKCK 125
           +  +  GFV QH      +TV +++    R+K         E    V  LLK + L    
Sbjct: 71  VQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLA 130

Query: 126 NSVLNVLSGGERKRVALA 143
           +     LSGG+R+RVALA
Sbjct: 131 DRYPAQLSGGQRQRVALA 148

Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 70.5 bits (173), Expect = 3e-14
 Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 20/155 (12%)

Query: 8   FGDTNYKESLS---GIAESGSLLAIMGPSGAGKTTLLACISQRIQG---DVDGQILLNGL 61
           F DT   + L    G+ + G L  ++G  G+G +TLL  I+    G    V+G I  +G+
Sbjct: 68  FRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGI 127

Query: 62  ---EVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRN----LHHVERARTV-D 113
              E++K+    V  +  + D+    LTV E +   AR K  +N    +   E A+ + D
Sbjct: 128 TPEEIKKHYRGDVV-YNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIAD 186

Query: 114 ALLKELGLLKCKNSV-----LNVLSGGERKRVALA 143
             +   GL   +N+      +  +SGGERKRV++A
Sbjct: 187 VYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIA 221

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein

 Score = 68.3 bits (168), Expect = 3e-14
 Identities = 43/130 (33%), Positives = 66/130 (50%), Gaps = 13/130 (10%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV----EKNLMV----KVSG 73
           E G  +AI+GPSG+GK+TLL  +    +    G++ ++G ++    EK L       + G
Sbjct: 28  EKGEFVAIVGPSGSGKSTLLNILGGLDRPT-SGEVRVDGTDISKLSEKELAAFRRRHI-G 85

Query: 74  FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLS 133
           FV Q    +  LT  E++ L   L         ERA     LL+ +GL    N   + LS
Sbjct: 86  FVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAE---ELLERVGLGDRLNHYPSELS 142

Query: 134 GGERKRVALA 143
           GG+++RVA+A
Sbjct: 143 GGQQQRVAIA 152

This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218

>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]

 Score = 67.6 bits (166), Expect = 7e-14
 Identities = 46/127 (36%), Positives = 75/127 (59%), Gaps = 8/127 (6%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS----GFVPQ 77
            SG ++ ++GP+GAGKTT    I   ++ D  G+ILL+  ++ K  M K +    G++PQ
Sbjct: 28  NSGEIVGLLGPNGAGKTTTFYMIVGLVRPD-SGKILLDDEDITKLPMHKRARLGIGYLPQ 86

Query: 78  HDLTVDTLTVHEHMTLMARLKM-DRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGE 136
                  LTV ++  +MA L++ +++L   ER   +DALL+E  +   ++S    LSGGE
Sbjct: 87  EASIFRKLTVEDN--IMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGE 144

Query: 137 RKRVALA 143
           R+RV +A
Sbjct: 145 RRRVEIA 151

Length = 243

>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein

 Score = 68.5 bits (168), Expect = 1e-13
 Identities = 24/54 (44%), Positives = 32/54 (59%)

Query: 151 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCR 204
           S +V Q DL + TLTV EH+   A L+M R +   E+   VD +L+ LGL KC 
Sbjct: 101 SAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCA 154

[Transport and binding proteins, Other]. Length = 617

>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system

 Score = 66.8 bits (164), Expect = 2e-13
 Identities = 56/207 (27%), Positives = 99/207 (47%), Gaps = 38/207 (18%)

Query: 12  NYKESLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLM 68
           N K++L  +      G  +A++GPSGAGK+TLL C++  ++    G +L++G ++ K   
Sbjct: 12  NGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT-SGSVLIDGTDINKLKG 70

Query: 69  VKV------SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNL----------HHVERARTV 112
             +       G + Q    ++ L+V E++ L  RL   R+              +RA   
Sbjct: 71  KALRQLRRQIGMIFQQFNLIERLSVLENV-LSGRLG-RRSTWRSLFGLFPKEEKQRAL-- 126

Query: 113 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFV----PQHDLTVDTLTVHE 168
            A L+ +GLL       + LSGG+++RVA+A + ++ Q   +    P   L  D  +  +
Sbjct: 127 -AALERVGLLDKAYQRADQLSGGQQQRVAIA-RALMQQPKLILADEPVASL--DPASSRQ 182

Query: 169 HMTLMARLKMDR------NLHHVERAR 189
            M L+ R+  +       +LH V+ AR
Sbjct: 183 VMDLLKRINREEGITVIVSLHQVDLAR 209

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241

>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like

 Score = 66.0 bits (162), Expect = 2e-13
 Identities = 48/143 (33%), Positives = 71/143 (49%), Gaps = 17/143 (11%)

Query: 8   FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV---- 63
           +G     + LS   E G  LA++GPSG GKTTLL  I+   + D  G+IL++G +V    
Sbjct: 10  YGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD-SGEILIDGRDVTGVP 68

Query: 64  --EKNLMVKVSGFVPQHDLTVDTLTVHEHMTL-MARLKMDRNLHHVERARTVDALLKELG 120
              +N+     G V Q       LTV E++   +    + +     E    V  LL+ +G
Sbjct: 69  PERRNI-----GMVFQDYALFPHLTVAENIAFGLKLRGVPKA----EIRARVRELLELVG 119

Query: 121 LLKCKNSVLNVLSGGERKRVALA 143
           L    N   + LSGG+++RVALA
Sbjct: 120 LEGLLNRYPHELSGGQQQRVALA 142

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213

>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters

 Score = 66.0 bits (162), Expect = 2e-13
 Identities = 49/148 (33%), Positives = 77/148 (52%), Gaps = 22/148 (14%)

Query: 8   FGDTNYKESLSGI---AESGSLLAIMGPSGAGKTTLLACIS--QRIQGDVDGQILLNGLE 62
           FGD      L GI    + G ++ I+GPSG+GK+TLL CI+  +       G I+++GL+
Sbjct: 10  FGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDS---GTIIIDGLK 63

Query: 63  VEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTL--MARLKMDRNLHHVERARTVDAL 115
           +       N + +  G V Q       LTV E++TL  +    M +     ERA     L
Sbjct: 64  LTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKA-EAEERAL---EL 119

Query: 116 LKELGLLKCKNSVLNVLSGGERKRVALA 143
           L+++GL    ++    LSGG+++RVA+A
Sbjct: 120 LEKVGLADKADAYPAQLSGGQQQRVAIA 147

HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213

>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 66.7 bits (164), Expect = 2e-13
 Identities = 43/134 (32%), Positives = 63/134 (47%), Gaps = 12/134 (8%)

Query: 17  LSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVK 70
           L  +      G ++AI+GP+GAGK+TLL  +S  +  D  G++ LNG  +       + +
Sbjct: 18  LDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD-SGEVRLNGRPLADWSPAELAR 76

Query: 71  VSGFVPQH-DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVL 129
               +PQH  L+    TV E +  M R      L   E    V A L ++ L        
Sbjct: 77  RRAVLPQHSSLSFP-FTVEE-VVAMGR--APHGLSRAEDDALVAAALAQVDLAHLAGRDY 132

Query: 130 NVLSGGERKRVALA 143
             LSGGE++RV LA
Sbjct: 133 PQLSGGEQQRVQLA 146

Length = 258

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score = 67.9 bits (166), Expect = 2e-13
 Identities = 40/138 (28%), Positives = 78/138 (56%), Gaps = 6/138 (4%)

Query: 16   SLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD-VDGQILLNGLEVEKNLMVKVSGF 74
             ++G    G L A+MG SGAGKTTL+  ++ R  G  ++G I ++G   ++    ++SG+
Sbjct: 898  EVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGY 957

Query: 75   VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV--- 131
              Q+D+    +TV E +   A L++ + +   E+   VD +++ + L   K++++ +   
Sbjct: 958  CEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGV 1017

Query: 132  --LSGGERKRVALAVQTI 147
              LS  +RKR+ +AV+ +
Sbjct: 1018 TGLSTEQRKRLTIAVELV 1035

Length = 1470

>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system

 Score = 66.0 bits (162), Expect = 3e-13
 Identities = 45/125 (36%), Positives = 72/125 (57%), Gaps = 8/125 (6%)

Query: 23  SGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS----GFVPQH 78
            G ++ ++GP+GAGKTT    I   ++ D  G+ILL+G ++ K  M K +    G++PQ 
Sbjct: 25  QGEIVGLLGPNGAGKTTTFYMIVGLVKPD-SGKILLDGQDITKLPMHKRARLGIGYLPQE 83

Query: 79  DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERK 138
                 LTV E+  ++A L++ R L   ER   ++ LL+E  +   + S  + LSGGER+
Sbjct: 84  ASIFRKLTVEEN--ILAVLEI-RGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERR 140

Query: 139 RVALA 143
           RV +A
Sbjct: 141 RVEIA 145

The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232

>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group

 Score = 64.9 bits (159), Expect = 4e-13
 Identities = 47/143 (32%), Positives = 71/143 (49%), Gaps = 11/143 (7%)

Query: 8   FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL 67
           FGD    + L+   E G + AI+G SG+GK+TLL  I   ++    GQ+ LNG E     
Sbjct: 8   FGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIG-LLEKFDSGQVYLNGQETPPLN 66

Query: 68  MVKVS-------GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELG 120
             K S       G++ Q+   ++  TV E++ L  + K    L   E+       L+++G
Sbjct: 67  SKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVG 123

Query: 121 LLKCKNSVLNVLSGGERKRVALA 143
           L       +  LSGGE++RVALA
Sbjct: 124 LNLKLKQKIYELSGGEQQRVALA 146

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206

>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 65.4 bits (160), Expect = 5e-13
 Identities = 52/187 (27%), Positives = 93/187 (49%), Gaps = 25/187 (13%)

Query: 24  GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV------EKNLMVKVSGFVPQ 77
           G ++AI+GPSGAGK+TLL  ++  +     G+IL NG+++      E   + +  G + Q
Sbjct: 30  GEMVAIIGPSGAGKSTLLRSLNGLVD-PTSGEILFNGVQITKLKGKELRKLRRDIGMIFQ 88

Query: 78  HDLTVDTLTVHEHMTL-----MARLKMDRNL-HHVERARTVDALLKELGLLKCKNSVLNV 131
               V  L+V E++ L      +  +    L    ++A+ +DA L+ +G+L       + 
Sbjct: 89  QFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDA-LERVGILDKAYQRAST 147

Query: 132 LSGGERKRVALAVQTIIVQSGFVPQHDLTV---DTLTVHEHMTLMARLKMDR------NL 182
           LSGG+++RVA+A    +VQ   +   D  V   D  +  + M ++  +  +       NL
Sbjct: 148 LSGGQQQRVAIA--RALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNL 205

Query: 183 HHVERAR 189
           H V+ A+
Sbjct: 206 HQVDLAK 212

Length = 258

>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

 Score = 65.7 bits (161), Expect = 8e-13
 Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 23/132 (17%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV------EKNLMVKVSGFV 75
           E G  + ++GPSG GK+TLL  I+   +    G+IL++G +V      ++ +       V
Sbjct: 27  EDGEFVVLLGPSGCGKSTLLRMIAGLEEPT-SGEILIDGRDVTDLPPEKRGI-----AMV 80

Query: 76  PQHDLTVDTLTVHEHMTLMARL-KMDRNLHHVERARTVDALLKELGL---LKCKNSVLNV 131
            Q+      +TV+E++    +L  + +     E  + V  + K LGL   L  K      
Sbjct: 81  FQNYALYPHMTVYENIAFGLKLRGVPKA----EIDKRVKEVAKLLGLEHLLNRK---PLQ 133

Query: 132 LSGGERKRVALA 143
           LSGG+R+RVALA
Sbjct: 134 LSGGQRQRVALA 145

Length = 338

>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 65.1 bits (159), Expect = 1e-12
 Identities = 45/126 (35%), Positives = 68/126 (53%), Gaps = 6/126 (4%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS----GFVPQ 77
           +SG L+A++GPSGAGK+TLL  I+     D  G+I LNG  +     + V     GFV Q
Sbjct: 26  KSGELVALLGPSGAGKSTLLRIIAGLETPD-AGRIRLNGRVLFDVSNLAVRDRKVGFVFQ 84

Query: 78  HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGER 137
           H      +TV +++    +++ +R     E    V+ LL+ + L    +     LSGG+R
Sbjct: 85  HYALFPHMTVADNIAFGLKVRKER-PSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQR 143

Query: 138 KRVALA 143
           +RVALA
Sbjct: 144 QRVALA 149

Length = 345

>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system

 Score = 62.7 bits (153), Expect = 4e-12
 Identities = 46/128 (35%), Positives = 62/128 (48%), Gaps = 13/128 (10%)

Query: 23  SGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG---LEVEKNLMVKVS----GFV 75
           +  +  I G SGAGK+TLL CI+   + D  G I+LNG    +  K + +       G V
Sbjct: 22  NEEVTGIFGASGAGKSTLLRCIAGLEKPDG-GTIVLNGTVLFDSRKKINLPPQQRKIGLV 80

Query: 76  PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGG 135
            Q       L V E++    + K +R     E   +VD LL  LGL    N     LSGG
Sbjct: 81  FQQYALFPHLNVRENLAFGLKRKRNR-----EDRISVDELLDLLGLDHLLNRYPAQLSGG 135

Query: 136 ERKRVALA 143
           E++RVALA
Sbjct: 136 EKQRVALA 143

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214

>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters

 Score = 62.5 bits (153), Expect = 4e-12
 Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 8/123 (6%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV-EKNLMVKVSGFVPQHDL 80
           E G  +A++GPSG GK+TLL  I+   +    G++L++G  V          G+V Q D 
Sbjct: 28  EEGEFVALVGPSGCGKSTLLRIIAGLERPT-SGEVLVDGEPVTGPGPDR---GYVFQQDA 83

Query: 81  TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRV 140
            +  LTV +++ L   L   + +   E     + LL+ +GL   +N+  + LSGG R+RV
Sbjct: 84  LLPWLTVLDNVALGLEL---QGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRV 140

Query: 141 ALA 143
           ALA
Sbjct: 141 ALA 143

NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 62.2 bits (152), Expect = 9e-12
 Identities = 47/148 (31%), Positives = 73/148 (49%), Gaps = 20/148 (13%)

Query: 8   FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV---- 63
           FGD    + +      G +LAI+G SG+GK+TLL  I   ++ D  G+IL++G ++    
Sbjct: 18  FGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD-KGEILIDGEDIPQLS 76

Query: 64  --EKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMAR--LKMDRNLHHVERARTVDALLKEL 119
             E   + K  G + Q      +LTV E++    R   K+  +L        V   L+ +
Sbjct: 77  EEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIR----ELVLMKLELV 132

Query: 120 GLLKCKNSVLNV----LSGGERKRVALA 143
           GL   + +  ++    LSGG RKRVALA
Sbjct: 133 GL---RGAAADLYPSELSGGMRKRVALA 157

Length = 263

>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters

 Score = 61.1 bits (149), Expect = 1e-11
 Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 32/133 (24%)

Query: 17  LSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD--VDGQILLNGLEVEKNLMV--KVS 72
            SG+ + G ++ ++G  G+G +TLL  ++ R +G+  V+G I  NG+  ++         
Sbjct: 26  FSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEI 85

Query: 73  GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCK-NSVLNV 131
            +V + D+   TLTV E                     T+D        L+CK N  +  
Sbjct: 86  IYVSEEDVHFPTLTVRE---------------------TLDF------ALRCKGNEFVRG 118

Query: 132 LSGGERKRVALAV 144
           +SGGERKRV++A 
Sbjct: 119 ISGGERKRVSIAE 131

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202

>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents

 Score = 61.0 bits (149), Expect = 1e-11
 Identities = 43/126 (34%), Positives = 67/126 (53%), Gaps = 9/126 (7%)

Query: 24  GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV------EKNLMVKVSGFVPQ 77
           G +LAI+GPSG+GK+TLL  I   ++ D  G++L++G ++      E   + +  G + Q
Sbjct: 26  GEILAIIGPSGSGKSTLLRLIVGLLRPDS-GEVLIDGEDISGLSEAELYRLRRRMGMLFQ 84

Query: 78  HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGER 137
                D+LTV E++     L+    L   E    V   L+ +GL   ++     LSGG +
Sbjct: 85  SGALFDSLTVFENVAFP--LREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMK 142

Query: 138 KRVALA 143
           KRVALA
Sbjct: 143 KRVALA 148

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 61.0 bits (149), Expect = 2e-11
 Identities = 42/122 (34%), Positives = 64/122 (52%), Gaps = 6/122 (4%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLT 81
           E G  +AI+GPSG GK+TLL  I+  ++    G++LL+G  V         G+V Q D  
Sbjct: 27  EKGEFVAILGPSGCGKSTLLRLIA-GLEKPTSGEVLLDGRPV--TGPGPDIGYVFQEDAL 83

Query: 82  VDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVA 141
           +  LTV +++ L   L+        E       LL+ +GL   ++   + LSGG R+RVA
Sbjct: 84  LPWLTVLDNVALGLELRGKSK---AEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVA 140

Query: 142 LA 143
           +A
Sbjct: 141 IA 142

Length = 248

>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

 Score = 60.6 bits (148), Expect = 2e-11
 Identities = 49/147 (33%), Positives = 79/147 (53%), Gaps = 21/147 (14%)

Query: 8   FGDTNYKESLSGIA---ESGSLLAIMGPSGAGKTTLLACIS--QRIQGDVDGQILLNGLE 62
           FGD   KE L GI+   E G ++ I+GPSG+GK+TLL C++  +       G I ++G +
Sbjct: 12  FGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGED 65

Query: 63  V----EKNLMVKVSGFVPQHDLTVDTLTVHEHMTL--MARLKMDRNLHHVERARTVDALL 116
           V    +   + +  G V Q       LTV E++TL  +   K+ +     E+A     LL
Sbjct: 66  VGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAR-EKAL---ELL 121

Query: 117 KELGLLKCKNSVLNVLSGGERKRVALA 143
           +++GL    ++    LSGG+++RVA+A
Sbjct: 122 EKVGLADKADAYPAQLSGGQQQRVAIA 148

Length = 240

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score = 58.2 bits (142), Expect = 8e-11
 Identities = 37/136 (27%), Positives = 57/136 (41%), Gaps = 44/136 (32%)

Query: 14  KESLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVK 70
           +  L  +    E+G ++ I+GP+GAGK+TLL  ++  +     G+ILL+G ++       
Sbjct: 12  RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLA-GLLKPSSGEILLDGKDLAS----- 65

Query: 71  VSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDAL---LKELGLLKCKNS 127
                                           L   E AR +  +   L+ LGL    + 
Sbjct: 66  --------------------------------LSPKELARKIAYVPQALELLGLAHLADR 93

Query: 128 VLNVLSGGERKRVALA 143
             N LSGGER+RV LA
Sbjct: 94  PFNELSGGERQRVLLA 109

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score = 57.8 bits (141), Expect = 1e-10
 Identities = 24/74 (32%), Positives = 44/74 (59%), Gaps = 3/74 (4%)

Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN--LMVKVSGFVPQHD 79
          E G +  ++GP+GAGKTTL+  I   ++ D  G+I + G +++K    + +  G++P+  
Sbjct: 24 EKGEIYGLLGPNGAGKTTLIKIILGLLKPD-SGEIKVLGKDIKKEPEEVKRRIGYLPEEP 82

Query: 80 LTVDTLTVHEHMTL 93
             + LTV E++ L
Sbjct: 83 SLYENLTVRENLKL 96

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 60.0 bits (145), Expect = 1e-10
 Identities = 40/121 (33%), Positives = 69/121 (57%), Gaps = 6/121 (4%)

Query: 26   LLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL-MVKVS-GFVPQHDLTVD 83
            + A +G +GAGKTT L+ ++  +     G +L+ G ++E NL  V+ S G  PQH++   
Sbjct: 958  ITAFLGHNGAGKTTTLSILTGLLP-PTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFH 1016

Query: 84   TLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 143
             LTV EH+   A+LK        E    ++A+L++ GL   +N     LSGG ++++++A
Sbjct: 1017 HLTVAEHILFYAQLK---GRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVA 1073

Query: 144  V 144
            +
Sbjct: 1074 I 1074

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 21/148 (14%)

Query: 8   FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV---- 63
           +G       LS    +G + A++GP+G GK+TLL C + R+     G + L    +    
Sbjct: 12  YGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFA-RLLTPQSGTVFLGDKPISMLS 70

Query: 64  EKNLMVKVSGFVPQHDLTVDTLTVHE--------HMTLMARLKMDRNLHHVERARTVDAL 115
            + L  +++  +PQH LT + +TV E         ++L  RL    +   V +A      
Sbjct: 71  SRQLARRLA-LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLS-AEDNARVNQA------ 122

Query: 116 LKELGLLKCKNSVLNVLSGGERKRVALA 143
           +++  +    +  L  LSGG+R+R  LA
Sbjct: 123 MEQTRINHLADRRLTDLSGGQRQRAFLA 150

Length = 255

>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 59.2 bits (144), Expect = 2e-10
 Identities = 47/150 (31%), Positives = 69/150 (46%), Gaps = 30/150 (20%)

Query: 8   FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG-----LE 62
           FGD    + +S   + G  + ++GPSG GKTTLL  I+   Q    G+ILL+G     + 
Sbjct: 15  FGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS-SGEILLDGEDITDVP 73

Query: 63  VEK-NLMVKVSGFVPQHDLTVDTLTVHEHMT--------LMARLKMDRNLHHVERARTVD 113
            EK  +     G V Q         +  HMT        L  R K+ +     E    V+
Sbjct: 74  PEKRPI-----GMVFQS------YALFPHMTVEENVAFGLKVRKKLKKA----EIKARVE 118

Query: 114 ALLKELGLLKCKNSVLNVLSGGERKRVALA 143
             L+ +GL    +   + LSGG+++RVALA
Sbjct: 119 EALELVGLEGFADRKPHQLSGGQQQRVALA 148

Length = 352

>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

 Score = 57.6 bits (140), Expect = 2e-10
 Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 13/139 (9%)

Query: 14  KESLSGIA---ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK----- 65
           +E+L  ++     G  + + GPSGAGK+TLL  I    +    G+IL+NG ++ +     
Sbjct: 15  REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT-RGKILVNGHDLSRLKGRE 73

Query: 66  -NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKC 124
              + +  G V Q    +   TV+E++ L  R+         E  R V  +L  +GL   
Sbjct: 74  IPFLRRQIGVVFQDFRLLPDRTVYENVALPLRV---IGKPPREIRRRVSEVLDLVGLKHK 130

Query: 125 KNSVLNVLSGGERKRVALA 143
             ++ + LSGGE++RVA+A
Sbjct: 131 ARALPSQLSGGEQQRVAIA 149

Length = 223

>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter

 Score = 57.7 bits (140), Expect = 2e-10
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 13/133 (9%)

Query: 21  AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV-----EKNLMVKVSGFV 75
            E G    I+GP+G+GK+ LL  I+  I+ D  G+ILLNG ++     EK  +     +V
Sbjct: 22  VERGDYFVILGPTGSGKSVLLETIAGFIKPD-SGKILLNGKDITNLPPEKRDI----SYV 76

Query: 76  PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGG 135
           PQ+      +TV++++    + +        E  R V  + + LG+    N     LSGG
Sbjct: 77  PQNYALFPHMTVYKNIAYGLKKRKVDK---KEIERKVLEIAEMLGIDHLLNRKPETLSGG 133

Query: 136 ERKRVALAVQTII 148
           E++RVA+A   ++
Sbjct: 134 EQQRVAIARALVV 146

Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein

 Score = 57.4 bits (139), Expect = 3e-10
 Identities = 43/139 (30%), Positives = 73/139 (52%), Gaps = 8/139 (5%)

Query: 8   FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV--EK 65
           +GD      +S     G +  ++GP+GAGKTT +  ++  ++    G+  + G +V  E 
Sbjct: 10  YGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT-SGRATVAGHDVVREP 68

Query: 66  NLMVKVSGFVPQHDLTVD-TLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKC 124
             + +  G V Q DL+VD  LT  E++ + ARL     +   ER   +D LL  +GLL+ 
Sbjct: 69  REVRRRIGIVFQ-DLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEA 124

Query: 125 KNSVLNVLSGGERKRVALA 143
            + ++   SGG R+R+ +A
Sbjct: 125 ADRLVKTYSGGMRRRLEIA 143

DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system

 Score = 57.3 bits (139), Expect = 3e-10
 Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 15/129 (11%)

Query: 21  AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL 80
             +G ++A+ G +GAGKTTL   ++  +  +  G ILLNG  ++     K  G+V Q   
Sbjct: 23  LYAGEIIALTGKNGAGKTTLAKILAG-LIKESSGSILLNGKPIKAKERRKSIGYVMQD-- 79

Query: 81  TVD----TLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGE 136
            VD    T +V E + L  +     N    E+A TV   LK+L L   K      LSGG+
Sbjct: 80  -VDYQLFTDSVREELLLGLKELDAGN----EQAETV---LKDLDLYALKERHPLSLSGGQ 131

Query: 137 RKRVALAVQ 145
           ++R+A+A  
Sbjct: 132 KQRLAIAAA 140

Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205

>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 56.9 bits (138), Expect = 5e-10
 Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 19/132 (14%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS----GFVPQ 77
           E G  L I+G SG+GK+TL   ++   +    G ILL+G  +      K        V Q
Sbjct: 31  ERGETLGIVGESGSGKSTLARLLAGLEKPS-SGSILLDGKPLAPKKRAKAFYRPVQMVFQ 89

Query: 78  HDLTVDTLTVHEHMTLMARLKMD--RNLHHVERARTVDALLKELGLLKCKNSVL----NV 131
                   +++   T + R+  +  R     +  + +  LL ++GL     S L    + 
Sbjct: 90  D----PYSSLNPRRT-VGRILSEPLRPHGLSKSQQRIAELLDQVGL---PPSFLDRRPHE 141

Query: 132 LSGGERKRVALA 143
           LSGG+R+R+A+A
Sbjct: 142 LSGGQRQRIAIA 153

Length = 252

>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

 Score = 57.0 bits (138), Expect = 6e-10
 Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 7/139 (5%)

Query: 8   FGD-TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN 66
           +G        +S  AE G +  ++G +GAGKTTLL  I+  +  D  G++ ++G++  ++
Sbjct: 11  YGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD-SGKVTIDGVDTVRD 69

Query: 67  LM--VKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKC 124
                +  G +         LT  E++   ARL     L   E    +  L K L LL+ 
Sbjct: 70  PSFVRRKIGVLFGERGLYARLTARENLKYFARL---NGLSRKEIKARIAELSKRLQLLEY 126

Query: 125 KNSVLNVLSGGERKRVALA 143
            +  +   S G +++VA+A
Sbjct: 127 LDRRVGEFSTGMKQKVAIA 145

Length = 245

>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter

 Score = 54.6 bits (132), Expect = 6e-10
 Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 14/111 (12%)

Query: 38  TTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS----GFVPQHDLTVDTLTVHEHMTL 93
           +TLL  I+  +Q    G ILL+G +       K+     G V Q       LTV E   L
Sbjct: 1   STLLKLITGLLQPT-SGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRE--NL 57

Query: 94  MARLKMDRNLHHVERARTVDALLKELGLLKCKN-SVLNVLSGGERKRVALA 143
              L+        E     +  L+ +GL    +   +  LSGG+++RVA+A
Sbjct: 58  FFGLRDK------EADARAEEALERVGLPDFLDREPVGTLSGGQKQRVAIA 102

ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119

>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 56.4 bits (136), Expect = 7e-10
 Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 13/125 (10%)

Query: 24  GSLLAIMGPSGAGKTTLLACISQRIQGDVD--GQILLNGLEVEKNLMVKVS----GFVPQ 77
           G ++ +MGPSG GK+TLL+ +   + G     G++ LN   ++   M+  +    G + Q
Sbjct: 28  GEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLD---MLPAAQRQIGILFQ 84

Query: 78  HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGER 137
             L    L+V +++       +   L    R    +A L+  GL    +     LSGG+R
Sbjct: 85  DALLFPHLSVGQNLL----FALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQR 140

Query: 138 KRVAL 142
            RVAL
Sbjct: 141 ARVAL 145

Length = 213

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score = 57.5 bits (139), Expect = 8e-10
 Identities = 42/161 (26%), Positives = 74/161 (45%), Gaps = 38/161 (23%)

Query: 18  SGIAESGSLLAIMGPSGAGKTTLLACISQRIQG--DVDGQILLNGLEVEKNLMVKVSGFV 75
           SGI +   +  ++GP  +GKTTLL  ++ ++     V G+I  NG  + + +  K S ++
Sbjct: 185 SGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYI 244

Query: 76  PQHDLTVDTLTVHEHM----------------TLMARLKMDRNLH--------------- 104
            Q+D+ V  +TV E +                + +AR + D  +                
Sbjct: 245 SQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAME 304

Query: 105 HVERARTVDALLKELGLLKCKNSV-----LNVLSGGERKRV 140
            V+ +   D  LK LGL  CK+++     +  +SGG++KRV
Sbjct: 305 GVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRV 345

Length = 1470

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score = 55.5 bits (135), Expect = 8e-10
 Identities = 33/140 (23%), Positives = 55/140 (39%), Gaps = 48/140 (34%)

Query: 10  DTNYKESLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK- 65
               K  L  +    + G  +AI+GPSG+GK+TLL  + +       G+IL++G+++   
Sbjct: 11  PGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT-SGEILIDGVDLRDL 69

Query: 66  --NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK 123
               + K   +VPQ        T+ E                                  
Sbjct: 70  DLESLRKNIAYVPQDPFLFSG-TIRE---------------------------------- 94

Query: 124 CKNSVLNVLSGGERKRVALA 143
                 N+LSGG+R+R+A+A
Sbjct: 95  ------NILSGGQRQRIAIA 108

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional

 Score = 55.9 bits (135), Expect = 1e-09
 Identities = 46/131 (35%), Positives = 71/131 (54%), Gaps = 11/131 (8%)

Query: 20  IAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGL-------EVEKNLMVKVS 72
           + + G  +A++G SG+GK+TLLA ++    G   G++ L G        E    L  K  
Sbjct: 32  VVKRGETIALIGESGSGKSTLLAILAGLDDGS-SGEVSLVGQPLHQMDEEARAKLRAKHV 90

Query: 73  GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVL 132
           GFV Q  + + TL   E++ L A L+ + +      A+   ALL++LGL K  + +   L
Sbjct: 91  GFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAK---ALLEQLGLGKRLDHLPAQL 147

Query: 133 SGGERKRVALA 143
           SGGE++RVALA
Sbjct: 148 SGGEQQRVALA 158

Length = 228

>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 56.3 bits (136), Expect = 1e-09
 Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 6/122 (4%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLT 81
            SG L+ ++GPSG GKTTLL  I+        G I LNG  +E     +  G V Q++  
Sbjct: 29  ASGELVVVLGPSGCGKTTLLNLIAG-FVTPSRGSIQLNGRRIEGPGAER--GVVFQNEAL 85

Query: 82  VDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVA 141
           +  L V +++    +L   R +   +R      +L  +GL   ++  +  LSGG R+RV 
Sbjct: 86  LPWLNVIDNVAFGLQL---RGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVG 142

Query: 142 LA 143
           +A
Sbjct: 143 IA 144

Length = 259

>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter

 Score = 55.4 bits (134), Expect = 1e-09
 Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 12/144 (8%)

Query: 8   FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE--- 64
           FG     + +S   E G +  ++GP+GAGKTT +  I   I  D  G++L +G  ++   
Sbjct: 10  FGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD-SGEVLFDGKPLDIAA 68

Query: 65  KNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKC 124
           +N +    G++P+       + V + +  +A+LK    L   E  R +D  L+ L L + 
Sbjct: 69  RNRI----GYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEY 121

Query: 125 KNSVLNVLSGGERKRVALAVQTII 148
            N  +  LS G +++V      +I
Sbjct: 122 ANKRVEELSKGNQQKVQFIA-AVI 144

This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210

>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional

 Score = 55.3 bits (133), Expect = 2e-09
 Identities = 42/135 (31%), Positives = 72/135 (53%), Gaps = 11/135 (8%)

Query: 15  ESLSGIAESGSLLAIMGPSGAGKTT---LLACISQRIQGDV---DGQILLNGLEVEKNLM 68
           E +S    SG ++ ++GP+GAGKTT   ++  I  R  G++   D  I L  L       
Sbjct: 20  EDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79

Query: 69  VKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSV 128
           +   G++PQ       L+V+++  LMA L++  +L   +R    + L++E  +   ++S+
Sbjct: 80  I---GYLPQEASIFRRLSVYDN--LMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSM 134

Query: 129 LNVLSGGERKRVALA 143
              LSGGER+RV +A
Sbjct: 135 GQSLSGGERRRVEIA 149

Length = 241

>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system

 Score = 55.1 bits (134), Expect = 2e-09
 Identities = 33/133 (24%), Positives = 62/133 (46%), Gaps = 12/133 (9%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGF------- 74
             G +  ++GP+GAGKTTL   IS  ++    G +L +G ++      +++         
Sbjct: 24  RPGEIHGLIGPNGAGKTTLFNLISGFLRPT-SGSVLFDGEDITGLPPHEIARLGIGRTFQ 82

Query: 75  VPQ--HDLTV-DTLTVHEHMTLMARLKMDRNLHHVERAR-TVDALLKELGLLKCKNSVLN 130
           +P+   +LTV + + V       + L + R       AR   + LL+ +GL    +    
Sbjct: 83  IPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAG 142

Query: 131 VLSGGERKRVALA 143
            LS G+++R+ +A
Sbjct: 143 ELSYGQQRRLEIA 155

The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236

>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter

 Score = 54.7 bits (132), Expect = 3e-09
 Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 13/137 (9%)

Query: 16  SLSGIA---ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK------N 66
           +L GI     +G  + ++GPSGAGK+TLL  I  + +    G I +NG +V         
Sbjct: 16  ALDGINISISAGEFVFLVGPSGAGKSTLLKLIY-KEELPTSGTIRVNGQDVSDLRGRAIP 74

Query: 67  LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKN 126
            + +  G V Q    +    V+E++     +     +   E  + V A L+ +GL     
Sbjct: 75  YLRRKIGVVFQDFRLLPDRNVYENVAFALEVT---GVPPREIRKRVPAALELVGLSHKHR 131

Query: 127 SVLNVLSGGERKRVALA 143
           ++   LSGGE++RVA+A
Sbjct: 132 ALPAELSGGEQQRVAIA 148

FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214

>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

 Score = 54.3 bits (131), Expect = 4e-09
 Identities = 43/124 (34%), Positives = 70/124 (56%), Gaps = 7/124 (5%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVK--VSGFVPQHD 79
            +G ++AI+GPSGAGK+TLL  I+        G+IL+NG++   +   +  VS    +++
Sbjct: 23  PAGEIVAILGPSGAGKSTLLNLIAGFETPA-SGEILINGVDHTASPPAERPVSMLFQENN 81

Query: 80  LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKR 139
           L    LTV +++ L   L     L+  +R + V+A   ++GL      +   LSGG+R+R
Sbjct: 82  LFAH-LTVAQNIGL--GLSPGLKLNAEQREK-VEAAAAQVGLAGFLKRLPGELSGGQRQR 137

Query: 140 VALA 143
           VALA
Sbjct: 138 VALA 141

Length = 231

>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 54.2 bits (131), Expect = 5e-09
 Identities = 35/129 (27%), Positives = 65/129 (50%), Gaps = 11/129 (8%)

Query: 21  AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL----MVKVSGFVP 76
            E G  + ++GP+G+GK+TLL  ++  ++    G++L++GL+         + +  G V 
Sbjct: 27  IEKGERVLLIGPNGSGKSTLLKLLNGLLK-PTSGEVLVDGLDTSSEKSLLELRQKVGLVF 85

Query: 77  QH-DLTVDTLTVHEHMTLMAR-LKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSG 134
           Q+ D  +   TV + +      L + R     E    V   L+ +GL +  +     LSG
Sbjct: 86  QNPDDQLFGPTVEDEVAFGLENLGLPRE----EIEERVAEALELVGLEELLDRPPFNLSG 141

Query: 135 GERKRVALA 143
           G+++RVA+A
Sbjct: 142 GQKQRVAIA 150

Length = 235

>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit

 Score = 53.7 bits (129), Expect = 6e-09
 Identities = 41/126 (32%), Positives = 59/126 (46%), Gaps = 6/126 (4%)

Query: 21  AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQ-HD 79
           A+ G LL ++GP+GAGKTTLL  I   I     G + + G    K    +  G+VPQ H+
Sbjct: 3   ADKGELLGLLGPNGAGKTTLLRAILGLIP-PAKGTVKVAGASPGKGW--RHIGYVPQRHE 59

Query: 80  LTVDTLTVHEHMTLMARLKMDRNLHHVERA--RTVDALLKELGLLKCKNSVLNVLSGGER 137
              D      H  +  R      L     A    V   L+ +GL +  +  +  LSGG+R
Sbjct: 60  FAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQR 119

Query: 138 KRVALA 143
           +RV +A
Sbjct: 120 QRVLVA 125

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223

>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit

 Score = 53.9 bits (130), Expect = 7e-09
 Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 6/142 (4%)

Query: 8   FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN- 66
           +GD    + ++     G +   +GP+GAGKTT +  ++  ++    G   + G +V +  
Sbjct: 3   YGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT-SGTARVAGYDVVREP 61

Query: 67  -LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCK 125
             + +  G VPQ+    + LT  E++ +M RL     L   E     + LL+   L +  
Sbjct: 62  RKVRRSIGIVPQYASVDEDLTGRENLEMMGRL---YGLPKDEAEERAEELLELFELGEAA 118

Query: 126 NSVLNVLSGGERKRVALAVQTI 147
           +  +   SGG R+R+ +A   I
Sbjct: 119 DRPVGTYSGGMRRRLDIAASLI 140

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302

>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 53.5 bits (129), Expect = 8e-09
 Identities = 39/126 (30%), Positives = 56/126 (44%), Gaps = 5/126 (3%)

Query: 21  AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGL---EVEKNLMVKVSGFVPQ 77
              G +LAI+GP+GAGK+TLL  +S  +  D  G++ LNG+         + +    +PQ
Sbjct: 24  LRPGEVLAILGPNGAGKSTLLKALSGELSPD-SGEVTLNGVPLNSWPPEELARHRAVLPQ 82

Query: 78  HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGER 137
           +       TV E +  M R+         E  R     L    L          LSGGE+
Sbjct: 83  NSSLAFPFTVQE-VVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQ 141

Query: 138 KRVALA 143
           +RV LA
Sbjct: 142 QRVQLA 147

Length = 259

>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 53.2 bits (128), Expect = 8e-09
 Identities = 44/129 (34%), Positives = 66/129 (51%), Gaps = 11/129 (8%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-------NLMVKVSGF 74
           + G  +AI+GPSG+GK+TLLA ++        G++ L G  + K        L  +  GF
Sbjct: 34  KRGETVAIVGPSGSGKSTLLAVLAGLDDPS-SGEVRLLGQPLHKLDEDARAALRARHVGF 92

Query: 75  VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSG 134
           V Q    +  LT  E++ L   L+ + +      A+   ALL+ +GL K        LSG
Sbjct: 93  VFQSFHLIPNLTALENVALPLELRGESSADSRAGAK---ALLEAVGLGKRLTHYPAQLSG 149

Query: 135 GERKRVALA 143
           GE++RVALA
Sbjct: 150 GEQQRVALA 158

Length = 228

>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system

 Score = 53.3 bits (129), Expect = 9e-09
 Identities = 33/147 (22%), Positives = 68/147 (46%), Gaps = 15/147 (10%)

Query: 15  ESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD----VDGQILLNGLEVEKNLMVK 70
           + +S     G + A++GPSG GK+TLL  +++          +G++LL+G ++    +  
Sbjct: 17  KDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDV 76

Query: 71  VS-----GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCK 125
           +      G V Q        ++++++    RL   +     E    V+  L++  L    
Sbjct: 77  LELRRRVGMVFQK-PNPFPGSIYDNVAYGLRLHGIKL--KEELDERVEEALRKAALWDEV 133

Query: 126 NSVLNV--LSGGERKRVALAVQTIIVQ 150
              L+   LSGG+++R+ LA + +  +
Sbjct: 134 KDRLHALGLSGGQQQRLCLA-RALANE 159

Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227

>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 40/134 (29%), Positives = 72/134 (53%), Gaps = 9/134 (6%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE----KNLMVKVSGFVPQ 77
             G + +I+GP+GAGK+TLL+ +S+ ++ D  G+I ++GLE+     K L  K+S  + Q
Sbjct: 25  PKGGITSIIGPNGAGKSTLLSMMSRLLKKD-SGEITIDGLELTSTPSKELAKKLS-ILKQ 82

Query: 78  HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGER 137
            +     LTV + +    R    +     E  R ++  ++ L L    +  L+ LSGG+R
Sbjct: 83  ENHINSRLTVRD-LVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQR 141

Query: 138 KRVALAVQTIIVQS 151
           +R  +A+  ++ Q 
Sbjct: 142 QRAFIAM--VLAQD 153

Length = 252

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 22/130 (16%)

Query: 17  LSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVP 76
           LS   + G  +AI+GP+GAGK+TLL  ++  +        +   +++         G+  
Sbjct: 341 LSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKI---------GYFD 391

Query: 77  QH-DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCK--NSVLNVLS 133
           QH D      TV E ++       D +   V       A L   G    +     + VLS
Sbjct: 392 QHRDELDPDKTVLEELS---EGFPDGDEQEVR------AYLGRFG-FTGEDQEKPVGVLS 441

Query: 134 GGERKRVALA 143
           GGE+ R+ LA
Sbjct: 442 GGEKARLLLA 451

Length = 530

>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit

 Score = 53.8 bits (130), Expect = 1e-08
 Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 13/136 (9%)

Query: 16  SLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV----EKNLMVKV 71
            +S     G  +A++GPSGAGK+TLL  +   +    +G I +NG+ +      +   ++
Sbjct: 340 PVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT-EGSIAVNGVPLADADADSWRDQI 398

Query: 72  SGFVPQHDLTVDTLTVHEHMTL----MARLKMDRNLHHVERARTVDALLKELGLLKCKNS 127
             +VPQH       T+ E++ L     +  ++   L        V AL + L     +  
Sbjct: 399 -AWVPQHPFLFAG-TIAENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEGG 456

Query: 128 VLNVLSGGERKRVALA 143
               LSGG+ +R+ALA
Sbjct: 457 --AGLSGGQAQRLALA 470

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA

 Score = 53.2 bits (128), Expect = 1e-08
 Identities = 41/146 (28%), Positives = 78/146 (53%), Gaps = 11/146 (7%)

Query: 7   LFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN 66
           L+G  N  + +S  A+ G ++  +GP+GAGK+T +  I+  +  D  G + + G +V +N
Sbjct: 11  LYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD-SGSVQVCGEDVLQN 69

Query: 67  LMVKVS---GFVPQHDLTVDTLTVHEHMTLMARL-KMDRNLHHVERARTVDALLKELGLL 122
              +V    G++P+H+     + V E++  +A +  M   L      + V+ +++ +GL 
Sbjct: 70  PK-EVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQL----LKQRVEEMIELVGLR 124

Query: 123 KCKNSVLNVLSGGERKRVALAVQTII 148
             ++  +  LS G R+RV LA Q +I
Sbjct: 125 PEQHKKIGQLSKGYRQRVGLA-QALI 149

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301

>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 53.4 bits (129), Expect = 1e-08
 Identities = 37/129 (28%), Positives = 64/129 (49%), Gaps = 12/129 (9%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV----EKNLMV--KVSGFV 75
             G +  I+G SGAGK+TLL  I+  ++    G + ++G ++    E  L    +  G +
Sbjct: 30  PKGEIFGIIGYSGAGKSTLLRLIN-LLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMI 88

Query: 76  PQHDLTVDTLTVHEHMTLMARL-KMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSG 134
            QH   + + TV E++     L  + +     E  + V  LL+ +GL    +     LSG
Sbjct: 89  FQHFNLLSSRTVFENVAFPLELAGVPKA----EIKQRVAELLELVGLSDKADRYPAQLSG 144

Query: 135 GERKRVALA 143
           G+++RVA+A
Sbjct: 145 GQKQRVAIA 153

Length = 339

>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE

 Score = 52.6 bits (127), Expect = 1e-08
 Identities = 43/131 (32%), Positives = 66/131 (50%), Gaps = 16/131 (12%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-------NLMVKVSGF 74
             G  L + GPSGAGKTTLL  +   +     GQ+ + G +V +        L  ++ G 
Sbjct: 26  RKGEFLFLTGPSGAGKTTLLKLLYGALTPS-RGQVRIAGEDVNRLRGRQLPLLRRRI-GV 83

Query: 75  VPQHDLTVDTLTVHEH--MTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVL 132
           V Q    +   TV+E+  + L  R K +R +      R V A L+++GL    ++    L
Sbjct: 84  VFQDFRLLPDRTVYENVALPLEVRGKKEREIQ-----RRVGAALRQVGLEHKADAFPEQL 138

Query: 133 SGGERKRVALA 143
           SGGE++RVA+A
Sbjct: 139 SGGEQQRVAIA 149

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score = 51.7 bits (125), Expect = 2e-08
 Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 152 GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCR 204
           G+ PQ D   D LTV EH+   ARLK    L   E    V+ LL+ LGL    
Sbjct: 78  GYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKA 127

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 52.5 bits (126), Expect = 2e-08
 Identities = 49/147 (33%), Positives = 79/147 (53%), Gaps = 20/147 (13%)

Query: 8   FGDTNY----KESLSGIA---ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG 60
           F + +Y    KE L  I+   E G++  I+GPSGAGK+TL+  I++ I    +G IL++G
Sbjct: 6   FKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID-PTEGSILIDG 64

Query: 61  LEVEKNLMV----KVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALL 116
           +++ K + V    +  G V Q     +  TV +++     LK ++N+  VE   ++  L 
Sbjct: 65  VDI-KTIDVIDLRRKIGMVFQQPHLFEG-TVKDNIEYGPMLKGEKNV-DVEYYLSIVGLN 121

Query: 117 KELGLLKCKNSVLNVLSGGERKRVALA 143
           KE      KN     LSGGE +RV++A
Sbjct: 122 KEYATRDVKN-----LSGGEAQRVSIA 143

Length = 241

>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters

 Score = 52.5 bits (127), Expect = 2e-08
 Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 19/133 (14%)

Query: 24  GSLLAIMGPSGAGKTTLLACI---SQRIQGDV--DGQILLNGLEVEKNLMVKVSGFVPQH 78
           G  L ++G SG+GK+TL   I    +   G +  DG+ LL      + +  K    V Q 
Sbjct: 31  GETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQD 90

Query: 79  DLTV--DTLTVHEHM--TLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV--- 131
            ++     +T+ E +   L    K+ +      R   V  LL  +GL +    VLN    
Sbjct: 91  PMSSLNPRMTIGEQIAEPLRIHGKLSK---KEARKEAVLLLLVGVGLPE---EVLNRYPH 144

Query: 132 -LSGGERKRVALA 143
            LSGG+R+RVA+A
Sbjct: 145 ELSGGQRQRVAIA 157

The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228

>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

 Score = 53.1 bits (128), Expect = 2e-08
 Identities = 42/124 (33%), Positives = 58/124 (46%), Gaps = 11/124 (8%)

Query: 24  GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS--GFVPQHDLT 81
           G  + ++GPSG GKTTLL  I+   +    G I   G ++   L  +    G V Q    
Sbjct: 30  GEFVCLLGPSGCGKTTLLRIIAGLERQTA-GTIYQGGRDI-TRLPPQKRDYGIVFQSYAL 87

Query: 82  VDTLTVHEHMT--LMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKR 139
              LTV +++   L  R  M R     E A  V  LL  +GL   +      LSGG+++R
Sbjct: 88  FPNLTVADNIAYGLKNR-GMGRA----EVAERVAELLDLVGLPGSERKYPGQLSGGQQQR 142

Query: 140 VALA 143
           VALA
Sbjct: 143 VALA 146

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353

>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter

 Score = 52.2 bits (126), Expect = 2e-08
 Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 25/133 (18%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLT 81
           + G    ++GPSG GKTTLL  I+        G+ILL+G ++           +P H   
Sbjct: 24  KEGEFFTLLGPSGCGKTTLLRLIAGFETPT-SGEILLDGKDITN---------LPPHKRP 73

Query: 82  VDT----------LTVHEHMTLMARLK-MDRNLHHVERARTVDALLKELGLLKCKNSVLN 130
           V+T          LTV E++    RLK + +     E    V   L  + L    N   +
Sbjct: 74  VNTVFQNYALFPHLTVFENIAFGLRLKKLPKA----EIKERVAEALDLVQLEGYANRKPS 129

Query: 131 VLSGGERKRVALA 143
            LSGG+++RVA+A
Sbjct: 130 QLSGGQQQRVAIA 142

PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232

>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 53.0 bits (128), Expect = 2e-08
 Identities = 39/141 (27%), Positives = 71/141 (50%), Gaps = 17/141 (12%)

Query: 14  KESLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL--- 67
           K +LS +    ++G L A++G SGAGK+TLL  +   +     G+I +NG+++  +L   
Sbjct: 334 KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT-QGEIRVNGIDLR-DLSPE 391

Query: 68  -MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKN 126
              K   +V Q+   +   T+ E++ L    + D +   +  A     LL+ +      +
Sbjct: 392 AWRKQISWVSQNPY-LFAGTIRENILL---ARPDASDEEIIAALDQAGLLEFVPKPDGLD 447

Query: 127 SVL----NVLSGGERKRVALA 143
           +V+      LSGG+ +R+ALA
Sbjct: 448 TVIGEGGAGLSGGQAQRLALA 468

Length = 559

>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 45/138 (32%), Positives = 77/138 (55%), Gaps = 13/138 (9%)

Query: 15  ESLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG--LEVEKNLMV 69
           E+L GI   AE G ++A++GP+GAGK+TL    +  ++    G++L+ G  ++ +K  ++
Sbjct: 16  EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT-SGEVLIKGEPIKYDKKSLL 74

Query: 70  KVS---GFVPQH-DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCK 125
           +V    G V Q+ D  +   TV E    +A   ++  L   E  + V   LK +G+   +
Sbjct: 75  EVRKTVGIVFQNPDDQLFAPTVEED---VAFGPLNLGLSKEEVEKRVKEALKAVGMEGFE 131

Query: 126 NSVLNVLSGGERKRVALA 143
           N   + LSGG++KRVA+A
Sbjct: 132 NKPPHHLSGGQKKRVAIA 149

Length = 275

>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 52.2 bits (126), Expect = 3e-08
 Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 14/135 (10%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS--GFV---- 75
             G ++ ++GP+GAGKTTL   I+   +    G ++  G ++      +++  G      
Sbjct: 28  RPGEIVGLIGPNGAGKTTLFNLITGFYKPS-SGTVIFRGRDITGLPPHRIARLGIARTFQ 86

Query: 76  ---PQHDLTV-DTLTV--HEHMTLMARLKMDRNLHHVERART-VDALLKELGLLKCKNSV 128
                  LTV + + V  H  + L   L   R       AR     LL+ +GL +  +  
Sbjct: 87  ITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRP 146

Query: 129 LNVLSGGERKRVALA 143
              LS G+++R+ +A
Sbjct: 147 AGNLSYGQQRRLEIA 161

Length = 250

>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 52.3 bits (126), Expect = 3e-08
 Identities = 40/128 (31%), Positives = 68/128 (53%), Gaps = 11/128 (8%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS---GFVPQH 78
           E G  L ++GPSG+GKTT L  I++ I+    G+IL++G ++     V++    G+V Q 
Sbjct: 25  EEGEFLVLIGPSGSGKTTTLKMINRLIEPT-SGEILIDGEDISDLDPVELRRKIGYVIQQ 83

Query: 79  DLTVDTLTVHEHMTLMARL-KMDRNLHHVERARTVDALLKELGL--LKCKNSVLNVLSGG 135
                 LTV E++  + +L   D+        +  D LL  +GL   +  +   + LSGG
Sbjct: 84  IGLFPHLTVAENIATVPKLLGWDKE----RIKKRADELLDLVGLDPSEYADRYPHELSGG 139

Query: 136 ERKRVALA 143
           +++RV +A
Sbjct: 140 QQQRVGVA 147

Length = 309

>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein

 Score = 51.4 bits (123), Expect = 3e-08
 Identities = 52/177 (29%), Positives = 86/177 (48%), Gaps = 14/177 (7%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVK--VSGFVPQHD 79
             G ++AIMGPSGAGK+TLL  I+  I+    G I +N          +  VS    +++
Sbjct: 22  ADGEIVAIMGPSGAGKSTLLNLIAGFIE-PASGSIKVNDQSHTGLAPYQRPVSMLFQENN 80

Query: 80  LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKR 139
           L    LTV +++ L   L     L+  ++ + VDA  +++G+    + +   LSGG+R+R
Sbjct: 81  L-FAHLTVRQNIGL--GLHPGLKLNAEQQEKVVDA-AQQVGIADYLDRLPEQLSGGQRQR 136

Query: 140 VALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDRNL------HHVERAR 189
           VALA   +      +     + +D L   E + L+ +L  +R        HH+  AR
Sbjct: 137 VALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDAR 193

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213

>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter

 Score = 51.3 bits (124), Expect = 4e-08
 Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 20/146 (13%)

Query: 10  DTNYKES--LSGI---AESGSLLAIMGPSGAGKTTLLACIS--QRIQGDVDGQILLNGLE 62
           +  Y +S  L G+      G ++A++G +GAGKTTLL  I      +    G I  +G +
Sbjct: 7   NAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRS---GSIRFDGRD 63

Query: 63  VEK---NLMVKVS-GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKE 118
           +     +   +   G+VP+       LTV E++ L A  +        +R   ++ + + 
Sbjct: 64  ITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRA-----KRKARLERVYEL 118

Query: 119 LGLLKCKNSVL-NVLSGGERKRVALA 143
              LK +   L   LSGGE++ +A+A
Sbjct: 119 FPRLKERRKQLAGTLSGGEQQMLAIA 144

LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 51.8 bits (125), Expect = 5e-08
 Identities = 34/140 (24%), Positives = 64/140 (45%), Gaps = 16/140 (11%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGD---VDGQILLNGLEV-------EKNLMVKV 71
           E G +L I+G SG+GK+TL   +   +        G+++L+G ++        + L  K 
Sbjct: 33  EPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKR 92

Query: 72  SGFVPQHDLTV--DTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL--KCKNS 127
              + Q  +T     +T+ + +    RL         E  +    LL+++GL   + ++ 
Sbjct: 93  IAMIFQDPMTSLNPVMTIGDQIREALRLHG--KGSRAEARKRAVELLEQVGLPDPERRDR 150

Query: 128 VLNVLSGGERKRVALAVQTI 147
             + LSGG R+RV +A+   
Sbjct: 151 YPHQLSGGMRQRVMIAMALA 170

Length = 539

>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 51.6 bits (124), Expect = 6e-08
 Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 17/123 (13%)

Query: 28  AIMGPSGAGKTTLLACISQRIQGDVDGQILLNG---LEVEKNLMVKVS----GFVPQHDL 80
           A+ GPSG+GKT+L+  I+   + D  G+I LNG   ++ EK + +       G+V Q   
Sbjct: 28  ALFGPSGSGKTSLINMIAGLTRPDE-GRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDAR 86

Query: 81  TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRV 140
                TV  ++       M      +     ++ LL               LSGGE++RV
Sbjct: 87  LFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYP---------GTLSGGEKQRV 137

Query: 141 ALA 143
           A+ 
Sbjct: 138 AIG 140

Length = 352

>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional

 Score = 51.1 bits (122), Expect = 7e-08
 Identities = 54/214 (25%), Positives = 95/214 (44%), Gaps = 28/214 (13%)

Query: 8   FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL 67
           +G     E+L+     G   AI+GP+G GK+TLL  +S R+     G + L+G  ++   
Sbjct: 17  YGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLS-RLMTPAHGHVWLDGEHIQHYA 75

Query: 68  MVKVS---GFVPQHDLTVDTLTVHE--------HMTLMARLKMDRNLHHVERARTVDALL 116
             +V+   G + Q+  T   +TV E        H  L  R +        E    V   +
Sbjct: 76  SKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRK-------EDEEAVTKAM 128

Query: 117 KELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHMTLMARL 176
           +  G+    +  ++ LSGG+R+R  +A+  ++ Q   +   D     L +   + L+  L
Sbjct: 129 QATGITHLADQSVDTLSGGQRQRAWIAM--VLAQETAIMLLDEPTTWLDISHQIDLLELL 186

Query: 177 -KMDRNLHHVERARTVDALLKELGLLKCRPADEL 209
            +++R     E+  T+ A+L +L    CR A  L
Sbjct: 187 SELNR-----EKGYTLAAVLHDLN-QACRYASHL 214

Length = 265

>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system

 Score = 50.6 bits (121), Expect = 8e-08
 Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 19/130 (14%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLT 81
             G + AI+GPSG+GK+TLL  I+        G++L+NG++V            P  D  
Sbjct: 22  AQGEITAIVGPSGSGKSTLLNLIAGFETPQ-SGRVLINGVDV---------TAAPPADRP 71

Query: 82  VDTL----TVHEHMTLMARLKMDRN----LHHVERARTVDALLKELGLLKCKNSVLNVLS 133
           V  L     +  H+T+   + +  +    L   +R   ++  L  +GL   +  +   LS
Sbjct: 72  VSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQA-IEVALARVGLAGLEKRLPGELS 130

Query: 134 GGERKRVALA 143
           GGER+RVALA
Sbjct: 131 GGERQRVALA 140

Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK

 Score = 50.3 bits (121), Expect = 8e-08
 Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 17/143 (11%)

Query: 8   FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV---- 63
           FG+    + L+     G  + ++GPSG GKTT L  I+   +    G+I + G +V    
Sbjct: 10  FGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT-SGRIYIGGRDVTDLP 68

Query: 64  --EKNL-MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELG 120
             ++++ MV  +  +  H      +TV++++    +L+        ER R V  LL+   
Sbjct: 69  PKDRDIAMVFQNYALYPH------MTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEH 122

Query: 121 LLKCKNSVLNVLSGGERKRVALA 143
           LL  K      LSGG+R+RVAL 
Sbjct: 123 LLDRKPK---QLSGGQRQRVALG 142

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213

>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

 Score = 50.5 bits (121), Expect = 9e-08
 Identities = 48/150 (32%), Positives = 73/150 (48%), Gaps = 35/150 (23%)

Query: 17  LSGI---AESGSLLAIMGPSGAGKTTLLACI-------SQRIQ-GDV--DGQILLNGLEV 63
           L GI    + G ++AI+GPSG+GKTTLL CI       +  I+ GD+  D    L+    
Sbjct: 19  LHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQ--- 75

Query: 64  EKNLMVKVS---GFVPQHDLTVDTLTVHEHMTLMARL-------KMDRNLHHVERARTVD 113
           +K L+ ++    GFV Q         +  H T++  +       K +       RAR   
Sbjct: 76  QKGLIRQLRQHVGFVFQ------NFNLFPHRTVLENIIEGPVIVKGEPKEEATARAR--- 126

Query: 114 ALLKELGLLKCKNSVLNVLSGGERKRVALA 143
            LL ++GL   + S    LSGG+++RVA+A
Sbjct: 127 ELLAKVGLAGKETSYPRRLSGGQQQRVAIA 156

Length = 250

>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 50.2 bits (121), Expect = 1e-07
 Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 22/134 (16%)

Query: 21  AESGSLLAIMGPSGAGKTTLLACIS--QRIQGDVDGQILLNGLEVEKNLMVKVS------ 72
            E G ++A++G +GAGKTTLL  I    R +    G+I+ +G ++     +         
Sbjct: 26  VERGEIVALLGRNGAGKTTLLKTIMGLVRPRS---GRIIFDGEDITG---LPPHERARLG 79

Query: 73  -GFVPQHDLTVDTLTVHEH--MTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVL 129
             +VP+       LTV E+  +   AR   +     +E    +   LKE      +N   
Sbjct: 80  IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKER-----RNQRA 134

Query: 130 NVLSGGERKRVALA 143
             LSGGE++ +A+A
Sbjct: 135 GTLSGGEQQMLAIA 148

Length = 237

>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 44/148 (29%), Positives = 74/148 (50%), Gaps = 18/148 (12%)

Query: 8   FGDTNYK-ESLSGIA---ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV 63
           FGDT  K  +L  ++     G +  I+G SGAGK+TL+ CI+   +    G +L++G ++
Sbjct: 11  FGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT-SGSVLVDGTDL 69

Query: 64  ----EKNLMVKVS---GFVPQHDLTVDTLTVHEHMTLMARL-KMDRNLHHVERARTVDAL 115
                K L  K     G + QH   + + TV E++ L   +  + +     E    V  L
Sbjct: 70  TLLSGKEL-RKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKA----EIEERVLEL 124

Query: 116 LKELGLLKCKNSVLNVLSGGERKRVALA 143
           L+ +GL    ++    LSGG+++RV +A
Sbjct: 125 LELVGLEDKADAYPAQLSGGQKQRVGIA 152

MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233

>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional

 Score = 49.9 bits (120), Expect = 1e-07
 Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 8/127 (6%)

Query: 17  LSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVP 76
           LS    +G  L + GP+G+GKTTLL  I+  +     G I L+G +++   + +   ++ 
Sbjct: 21  LSFTLAAGEALVLTGPNGSGKTTLLRLIA-GLLPPAAGTIKLDGGDIDDPDVAEACHYLG 79

Query: 77  QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGE 136
             +     LTV E++   A       L        + A L+ +GL    +     LS G+
Sbjct: 80  HRNAMKPALTVAENLEFWAAFLGGEELD-------IAAALEAVGLAPLAHLPFGYLSAGQ 132

Query: 137 RKRVALA 143
           ++RVALA
Sbjct: 133 KRRVALA 139

Length = 207

>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein

 Score = 50.7 bits (121), Expect = 1e-07
 Identities = 43/128 (33%), Positives = 69/128 (53%), Gaps = 7/128 (5%)

Query: 21  AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLE---VEKNLMVKVSGFVPQ 77
           A++G  +AI+GP+GAGKTTL+  + QR+     GQIL++G++   V +  + K    V Q
Sbjct: 358 AKAGQTVAIVGPTGAGKTTLINLL-QRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQ 416

Query: 78  HDLTVDTLTVHEHMTLMARLKMDRNLHH-VERARTVDALLKEL-GLLKCKNSVLNVLSGG 135
            D  +   ++ E++ L      D  ++   + A   D +LK   G         N LSGG
Sbjct: 417 -DAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGG 475

Query: 136 ERKRVALA 143
           ER+R+A+A
Sbjct: 476 ERQRLAIA 483

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 50.8 bits (121), Expect = 2e-07
 Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 14/130 (10%)

Query: 24   GSLLAIMGPSGAGKTT---LLACISQRIQGD--VDGQ-ILLNGLEVEKNLMVKVSGFVPQ 77
            G    ++G +GAGKTT   +L   +    GD  V G+ IL N  +V +N+     G+ PQ
Sbjct: 1965 GECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNM-----GYCPQ 2019

Query: 78   HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGER 137
             D   D LT  EH+ L ARL   R +   E  +  +  ++ LGL    + +    SGG +
Sbjct: 2020 FDAIDDLLTGREHLYLYARL---RGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNK 2076

Query: 138  KRVALAVQTI 147
            ++++ A+  I
Sbjct: 2077 RKLSTAIALI 2086

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 34/134 (25%), Positives = 63/134 (47%), Gaps = 12/134 (8%)

Query: 15  ESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVS- 72
           + +S   + G +  ++GP+GAGKTT L  ++  ++ D  G   ++G +V K     +   
Sbjct: 22  DGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD-AGFATVDGFDVVKEPAEARRRL 80

Query: 73  GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR---TVDALLKELGLLKCKNSVL 129
           GFV       D LT  E++   A       L+ ++       ++ L   LG+ +  +  +
Sbjct: 81  GFVSDSTGLYDRLTARENLEYFAG------LYGLKGDELTARLEELADRLGMEELLDRRV 134

Query: 130 NVLSGGERKRVALA 143
              S G R++VA+A
Sbjct: 135 GGFSTGMRQKVAIA 148

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218

>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 42/148 (28%), Positives = 67/148 (45%), Gaps = 27/148 (18%)

Query: 8   FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL 67
           F       +L     +G  L ++GPSG GKTT+L  I+     D  G+I+L+G ++    
Sbjct: 24  FDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD-SGRIMLDGQDITH-- 80

Query: 68  MVKVSGFVPQHDLTVDTL----TVHEHMTLMAR----LKMDRNLHHVERARTVDAL---- 115
                  VP  +  V+T+     +  HMT+       L+M +        R ++AL    
Sbjct: 81  -------VPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQ 133

Query: 116 LKELGLLKCKNSVLNVLSGGERKRVALA 143
           L+E    K        LSGG+++RVA+A
Sbjct: 134 LEEFAQRKPHQ-----LSGGQQQRVAIA 156

Length = 375

>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed

 Score = 50.2 bits (120), Expect = 2e-07
 Identities = 46/146 (31%), Positives = 70/146 (47%), Gaps = 17/146 (11%)

Query: 8   FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL 67
           FGDT   + +      GSL+ ++GP+GAGKTTLL  I+  +     G +L+ G +VE   
Sbjct: 13  FGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTA-GTVLVAGDDVEALS 71

Query: 68  MVKVS---GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLH------HVERART-VDALLK 117
               S     VPQ     DT ++     +   ++M R  H        E  R  V+  ++
Sbjct: 72  ARAASRRVASVPQ-----DT-SLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAME 125

Query: 118 ELGLLKCKNSVLNVLSGGERKRVALA 143
             G+ +  +  +  LSGGER+RV LA
Sbjct: 126 RTGVAQFADRPVTSLSGGERQRVLLA 151

Length = 402

>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems

 Score = 48.7 bits (117), Expect = 2e-07
 Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 43/127 (33%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMV-----KVSGFVP 76
           E+G ++A++GPSG+GK+TLL CI+   + D  G IL++G ++           +  G V 
Sbjct: 24  EAGEIVALLGPSGSGKSTLLRCIAGLEEPD-SGSILIDGEDLTDLEDELPPLRRRIGMVF 82

Query: 77  QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGE 136
           Q       LTV E++ L                                      LSGG+
Sbjct: 83  QDFALFPHLTVLENIAL-------------------------------------GLSGGQ 105

Query: 137 RKRVALA 143
           ++RVALA
Sbjct: 106 QQRVALA 112

This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178

>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 37/130 (28%), Positives = 69/130 (53%), Gaps = 13/130 (10%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACIS--QRIQGDVDGQILLNGLEVE---KNLMVKVS---G 73
             G ++ + GPSG+GKTTLL  I   + +Q   +G + + G E+    +  +V++    G
Sbjct: 29  NPGEIVILTGPSGSGKTTLLTLIGGLRSVQ---EGSLKVLGQELYGASEKELVQLRRNIG 85

Query: 74  FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLS 133
           ++ Q    +  LT  +++ +   L+   NL + E      A+L+ +GL    +   + LS
Sbjct: 86  YIFQAHNLLGFLTARQNVQMALELQ--PNLSYQEARERARAMLEAVGLGDHLDYYPHNLS 143

Query: 134 GGERKRVALA 143
           GG+++RVA+A
Sbjct: 144 GGQKQRVAIA 153

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220

>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 49.8 bits (119), Expect = 2e-07
 Identities = 43/143 (30%), Positives = 71/143 (49%), Gaps = 8/143 (5%)

Query: 5   HPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE 64
           +   G      +++ IA   S +A++GP+GAGK+TL    +  I     G +L+ G  + 
Sbjct: 11  YSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNG-ILKPTSGSVLIRGEPIT 69

Query: 65  KNLMVKVSGFV----PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELG 120
           K  + +V  FV       D  + + TV + +   A   ++  L     A  V + L  LG
Sbjct: 70  KENIREVRKFVGLVFQNPDDQIFSPTVEQDI---AFGPINLGLDEETVAHRVSSALHMLG 126

Query: 121 LLKCKNSVLNVLSGGERKRVALA 143
           L + ++ V + LSGGE+KRVA+A
Sbjct: 127 LEELRDRVPHHLSGGEKKRVAIA 149

Length = 277

>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 47/144 (32%), Positives = 75/144 (52%), Gaps = 15/144 (10%)

Query: 8   FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE--- 64
           FG T     +S    SG ++A++GPSG+GKTTLL  I+  ++    G I  +G +V    
Sbjct: 12  FGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAG-LEHQTSGHIRFHGTDVSRLH 70

Query: 65  -KNLMVKVSGFVPQHDLTVDTLTVHEH----MTLMARLKMDRNLHHVERARTVDALLKEL 119
            ++  V   GFV QH      +TV ++    +T++ R +  R      +A+ V  LL+ +
Sbjct: 71  ARDRKV---GFVFQHYALFRHMTVFDNIAFGLTVLPRRE--RPNAAAIKAK-VTQLLEMV 124

Query: 120 GLLKCKNSVLNVLSGGERKRVALA 143
            L    +     LSGG+++RVALA
Sbjct: 125 QLAHLADRYPAQLSGGQKQRVALA 148

Length = 353

>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 34/136 (25%), Positives = 68/136 (50%), Gaps = 7/136 (5%)

Query: 8   FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL 67
           FGD    +++S     G +  ++GP+GAGKTT    I   ++   +G+I  NG  + + +
Sbjct: 12  FGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT-EGEITWNGGPLSQEI 70

Query: 68  MVKVSGFVPQHDLTVDTLTVHEHMTLMARLK-MDRNLHHVERARTVDALLKELGLLKCKN 126
             ++ G++P+       +TV + +  +A LK M +     E  + + A L+ L ++  K 
Sbjct: 71  KNRI-GYLPEERGLYPKMTVEDQLKYLAELKGMPKA----EIQKKLQAWLERLEIVGKKT 125

Query: 127 SVLNVLSGGERKRVAL 142
             +  LS G ++++  
Sbjct: 126 KKIKELSKGNQQKIQF 141

Length = 300

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score = 48.0 bits (115), Expect = 3e-07
 Identities = 20/59 (33%), Positives = 40/59 (67%), Gaps = 4/59 (6%)

Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS---GFVPQ 77
          ++G ++A++GP+G+GK+TLL  I+  +     G+IL++G ++ K  + ++    G+VPQ
Sbjct: 23 KAGEIVALVGPNGSGKSTLLRAIA-GLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ 80

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 49.1 bits (118), Expect = 4e-07
 Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 21/133 (15%)

Query: 24  GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSG-----FVPQH 78
           G  L ++G SG+GK+TL   ++  +     G I+ +G +++               V Q 
Sbjct: 317 GETLGLVGESGSGKSTLARILAGLLPPS-SGSIIFDGQDLDLTGGELRRLRRRIQMVFQD 375

Query: 79  DLTVDTLTVHEHMT----LMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV--- 131
                +L     MT    L   L++       ER   V  LL+ +GL       L+    
Sbjct: 376 --PYSSLNP--RMTVGDILAEPLRIHGGGSGAERRARVAELLELVGL---PPEFLDRYPH 428

Query: 132 -LSGGERKRVALA 143
            LSGG+R+RVA+A
Sbjct: 429 ELSGGQRQRVAIA 441

Length = 539

>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

 Score = 49.2 bits (117), Expect = 4e-07
 Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 15/136 (11%)

Query: 15  ESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD-VDGQILLNGLEV------EKNL 67
           + LS   E+G LLA++G SG GKTTLL  I+  ++   + G+I +   ++      ++ L
Sbjct: 22  DDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGL 81

Query: 68  MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNS 127
                  + Q+      L V +++    R    + +   + A  V   LK +GL      
Sbjct: 82  -----ALLFQNYALFPHLKVEDNVAFGLRA---QKMPKADIAERVADALKLVGLGDAAAH 133

Query: 128 VLNVLSGGERKRVALA 143
           +   LSGG ++R+A+A
Sbjct: 134 LPAQLSGGMQQRIAIA 149

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362

>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit

 Score = 48.6 bits (116), Expect = 6e-07
 Identities = 40/123 (32%), Positives = 61/123 (49%), Gaps = 19/123 (15%)

Query: 29  IMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTL--- 85
           ++GPSG GKTTLL  ++   Q D  G I+L+G +V           VP H   ++ +   
Sbjct: 1   LLGPSGCGKTTLLRLLAGFEQPD-SGSIMLDGEDVTN---------VPPHLRHINMVFQS 50

Query: 86  -TVHEHMTLMAR----LKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRV 140
             +  HMT+       LKM R +   E    V   L+ + L +  +   + LSGG+++RV
Sbjct: 51  YALFPHMTVEENVAFGLKM-RKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRV 109

Query: 141 ALA 143
           ALA
Sbjct: 110 ALA 112

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325

>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C

 Score = 48.0 bits (115), Expect = 6e-07
 Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 25/137 (18%)

Query: 21  AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLE---VEKNLMVKVSGFVPQ 77
            + G  +AI+GP+GAGKTTL+  +  R      GQIL++G++   + +  +  + G V Q
Sbjct: 26  IKPGETVAIVGPTGAGKTTLINLLM-RFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQ 84

Query: 78  HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELG-------LLKCKNSVLN 130
                         T+M  +++ R     E    V    KE G       L    ++VL 
Sbjct: 85  DTFLFSG-------TIMENIRLGRPNATDEE---VIEAAKEAGAHDFIMKLPNGYDTVLG 134

Query: 131 ----VLSGGERKRVALA 143
                LS GER+ +A+A
Sbjct: 135 ENGGNLSQGERQLLAIA 151

Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229

>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit

 Score = 48.9 bits (117), Expect = 6e-07
 Identities = 45/137 (32%), Positives = 70/137 (51%), Gaps = 17/137 (12%)

Query: 17  LSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGL---EVEKNLMVKVSG 73
           +S     G  +AI+GPSG+GK+TLLA +   +   + G++ L+G+    ++++ + +   
Sbjct: 354 VSLDLPPGERVAILGPSGSGKSTLLATL-AGLLDPLQGEVTLDGVPVSSLDQDEVRRRVS 412

Query: 74  FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHV-ERARTVDALLKEL--GLLKCKNSVLN 130
              Q     DT TV E++ L      D  L    ER    D  L+ L  GL    ++VL 
Sbjct: 413 VCAQDAHLFDT-TVRENLRLARPDATDEELWAALERVGLAD-WLRALPDGL----DTVLG 466

Query: 131 ----VLSGGERKRVALA 143
                LSGGER+R+ALA
Sbjct: 467 EGGARLSGGERQRLALA 483

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530

>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein

 Score = 48.6 bits (116), Expect = 6e-07
 Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 19/126 (15%)

Query: 28  AIMGPSGAGKTTLLACISQRIQGDVDGQILLNG---LEVEKNLMVKVSGFVPQHDLTVDT 84
           AI G SG+GKTTL+  I+   + D  G+I+LNG    +  K +      F+P     +  
Sbjct: 27  AIFGRSGSGKTTLIRLIAGLTRPDE-GEIVLNGRTLFDSRKGI------FLPPEKRRIG- 78

Query: 85  LTVHEHMTLMARLKMDRNLHH-------VERARTVDALLKELGLLKCKNSVLNVLSGGER 137
             V +   L   L +  NL +        ER  + + +++ LG+      +   LSGGE+
Sbjct: 79  -YVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEK 137

Query: 138 KRVALA 143
           +RVA+ 
Sbjct: 138 QRVAIG 143

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354

>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional

 Score = 48.0 bits (115), Expect = 7e-07
 Identities = 41/125 (32%), Positives = 66/125 (52%), Gaps = 7/125 (5%)

Query: 21  AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVK--VSGFVPQH 78
            E G  +AI+GPSGAGK+TLL  I+  +     G + LNG +       +  VS    ++
Sbjct: 22  VERGERVAILGPSGAGKSTLLNLIAGFLTPA-SGSLTLNGQDHTTTPPSRRPVSMLFQEN 80

Query: 79  DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERK 138
           +L    LTV +++ L   L     L+  +R   + A+ +++G+      +   LSGG+R+
Sbjct: 81  NL-FSHLTVAQNIGL--GLNPGLKLNAAQR-EKLHAIARQMGIEDLLARLPGQLSGGQRQ 136

Query: 139 RVALA 143
           RVALA
Sbjct: 137 RVALA 141

Length = 232

>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 48.1 bits (115), Expect = 7e-07
 Identities = 55/192 (28%), Positives = 88/192 (45%), Gaps = 31/192 (16%)

Query: 20  IAESGSLLAIMGPSGAGKTTLLACISQRIQGDVD---GQILLNGLEVEK-------NLMV 69
           IAE G  + ++G +GAGK+TLL  I+    GD+    GQIL++G++V K       NL+ 
Sbjct: 29  IAE-GDFVTVIGSNGAGKSTLLNAIA----GDLKPTSGQILIDGVDVTKKSVAKRANLLA 83

Query: 70  KVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD---ALLKEL--GLLKC 124
           +V  F      T   LT+ E++ L       R L      R        L  L  GL   
Sbjct: 84  RV--FQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENR 141

Query: 125 KNSVLNVLSGGERKRVALAVQTIIVQSG--FVPQHDLTVDTLTVHEHMTLMARLKMDRNL 182
            +  + +LSGG+R+ ++L + T +       + +H   +D  T    M L A++  +  L
Sbjct: 142 LSDRIGLLSGGQRQALSLLMAT-LHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKL 200

Query: 183 ------HHVERA 188
                 H++E A
Sbjct: 201 TTLMVTHNMEDA 212

Length = 263

>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional

 Score = 47.8 bits (114), Expect = 8e-07
 Identities = 56/164 (34%), Positives = 73/164 (44%), Gaps = 37/164 (22%)

Query: 24  GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG-----------LEVEKNL-MVKV 71
           G + AIMGPSG GKTTLL  I  +I  D  G+IL +G             V K + M+  
Sbjct: 33  GKITAIMGPSGIGKTTLLRLIGGQIAPD-HGEILFDGENIPAMSRSRLYTVRKRMSMLFQ 91

Query: 72  SG--FVPQHDLTV-DTLT--VHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKN 126
           SG  F    D+ V D +   + EH  L A L     LH      TV   L+ +GL     
Sbjct: 92  SGALFT---DMNVFDNVAYPLREHTQLPAPL-----LH-----STVMMKLEAVGLRGAAK 138

Query: 127 SVLNVLSGGERKRVALA------VQTIIVQSGFVPQHDLTVDTL 164
            + + LSGG  +R ALA         I+    FV Q  +T+  L
Sbjct: 139 LMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVL 182

Length = 269

>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 40/122 (32%), Positives = 64/122 (52%), Gaps = 6/122 (4%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLT 81
           ESG LL ++GPSG GKTTLL  I+  +     G I L+G  VE     +  G V Q++  
Sbjct: 25  ESGELLVVLGPSGCGKTTLLNLIAGFVPYQ-HGSITLDGKPVEGPGAER--GVVFQNEGL 81

Query: 82  VDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVA 141
           +    V +++    +L     +  ++R      +LK++GL   +   +  LSGG+R+RV 
Sbjct: 82  LPWRNVQDNVAFGLQL---AGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVG 138

Query: 142 LA 143
           +A
Sbjct: 139 IA 140

Length = 255

>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

 Score = 47.1 bits (112), Expect = 1e-06
 Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 13/131 (9%)

Query: 16  SLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS--- 72
            LSG   +G +L ++GP+GAGK+TLLA ++    G   G I   G  +E     +++   
Sbjct: 17  PLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG--SGSIQFAGQPLEAWSATELARHR 74

Query: 73  GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVL 132
            ++ Q       + V  ++TL        +     R   ++ +   L L        N L
Sbjct: 75  AYLSQQQTPPFAMPVWHYLTL--------HQPDKTRTELLNDVAGALALDDKLGRSTNQL 126

Query: 133 SGGERKRVALA 143
           SGGE +RV LA
Sbjct: 127 SGGEWQRVRLA 137

Length = 248

>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 44/147 (29%), Positives = 74/147 (50%), Gaps = 20/147 (13%)

Query: 8   FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACIS--QRIQGD---VDGQILLNGLE 62
           FG T    ++    + G ++ I+GPSG+GK+TLL CI+  + I      VDG + +N  +
Sbjct: 11  FGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDG-LKVNDPK 69

Query: 63  VEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA------LL 116
           V++ L+ + +G V Q       LT  E++              V  A   +A      LL
Sbjct: 70  VDERLIRQEAGMVFQQFYLFPHLTALENVMFGPL--------RVRGASKEEAEKQARELL 121

Query: 117 KELGLLKCKNSVLNVLSGGERKRVALA 143
            ++GL +  +   + LSGG+++RVA+A
Sbjct: 122 AKVGLAERAHHYPSELSGGQQQRVAIA 148

Length = 240

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 47.5 bits (114), Expect = 1e-06
 Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 13/125 (10%)

Query: 24  GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS--------GFV 75
           G + A++G +GAGK+TL+  +    Q D  G+I ++G EV     +K          G V
Sbjct: 30  GEIHALLGENGAGKSTLMKILFGLYQPD-SGEIRVDGKEVR----IKSPRDAIRLGIGMV 84

Query: 76  PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGG 135
            QH + V TLTV E++ L         +   +    +  L +  GL    ++ +  LS G
Sbjct: 85  HQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVG 144

Query: 136 ERKRV 140
           E++RV
Sbjct: 145 EQQRV 149

Length = 501

>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 42/166 (25%), Positives = 76/166 (45%), Gaps = 35/166 (21%)

Query: 2   ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGL 61
           E  H  +G+    + +S  A +G +++I+G SG+GK+T L CI+  ++    G I +NG 
Sbjct: 10  EDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINF-LEKPSAGSIRVNGE 68

Query: 62  EV----------------EKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMAR--------L 97
           E+                +   +    G V QH        +  HMT++          L
Sbjct: 69  EIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQH------FNLWSHMTVLENVIEAPVHVL 122

Query: 98  KMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 143
            + +    +ERA      L ++G+ +  ++    LSGG+++RVA+A
Sbjct: 123 GVSKA-EAIERAE---KYLAKVGIAEKADAYPAHLSGGQQQRVAIA 164

Length = 256

>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 21/132 (15%)

Query: 24  GSLLAIMGPSGAGKTTLLACISQRIQGDVD----GQILLNGLEVEK-------NLMVKVS 72
           G ++AI+G SG+GK+TLL      + G +D    G++L NG  + K        L  K  
Sbjct: 31  GEIVAIVGSSGSGKSTLL-----HLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKL 85

Query: 73  GFVPQ-HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV 131
           GF+ Q H L  D  T  E++ +   +         ERA     +L+++GL    N   + 
Sbjct: 86  GFIYQFHHLLPD-FTALENVAMPLLIGKKSVKEAKERAY---EMLEKVGLEHRINHRPSE 141

Query: 132 LSGGERKRVALA 143
           LSGGER+RVA+A
Sbjct: 142 LSGGERQRVAIA 153

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221

>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional

 Score = 46.3 bits (111), Expect = 2e-06
 Identities = 39/147 (26%), Positives = 62/147 (42%), Gaps = 27/147 (18%)

Query: 5   HPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE 64
             LF        LS    +G L+ I GP+GAGKT+LL  ++   + D  G++L  G  + 
Sbjct: 14  RILF------SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD-AGEVLWQGEPIR 66

Query: 65  KNLMVKVSGFVPQHDLTV--------DTLTVHEHMTLMARLKMDRNLHHVERARTVDALL 116
           +             DL            LT  E++    RL         +     +AL 
Sbjct: 67  RQ------RDEYHQDLLYLGHQPGIKTELTALENLRFYQRLH-----GPGDDEALWEALA 115

Query: 117 KELGLLKCKNSVLNVLSGGERKRVALA 143
           + +GL   ++  +  LS G+++RVALA
Sbjct: 116 Q-VGLAGFEDVPVRQLSAGQQRRVALA 141

Length = 204

>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 45/139 (32%), Positives = 73/139 (52%), Gaps = 18/139 (12%)

Query: 16  SLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE----KNLMVKV 71
           S+S + E G  +A++G SG+GK+TL+  I +  + D  GQILL+G ++      +L  +V
Sbjct: 350 SISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD-SGQILLDGHDLADYTLASLRRQV 408

Query: 72  SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART-------VDALLKELGLLKC 124
           +  V Q  +  +  T+  ++      + DR    +ERA         VD L   L     
Sbjct: 409 A-LVSQDVVLFND-TIANNIAYGRTEQADR--AEIERALAAAYAQDFVDKLPLGLDTPIG 464

Query: 125 KNSVLNVLSGGERKRVALA 143
           +N VL  LSGG+R+R+A+A
Sbjct: 465 ENGVL--LSGGQRQRLAIA 481

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571

>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 37/129 (28%), Positives = 62/129 (48%), Gaps = 11/129 (8%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-------NLMVKVSGF 74
             G +  IMG SG+GK+TLL CI++ I+    G++L++G ++          L  K    
Sbjct: 48  REGEIFVIMGLSGSGKSTLLRCINRLIEPT-SGKVLIDGQDIAAMSRKELRELRRKKISM 106

Query: 75  VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSG 134
           V Q    +   TV E++     +   + +   ER       L+ +GL   ++   + LSG
Sbjct: 107 VFQSFALLPHRTVLENVAFGLEV---QGVPRAEREERAAEALELVGLEGWEHKYPDELSG 163

Query: 135 GERKRVALA 143
           G ++RV LA
Sbjct: 164 GMQQRVGLA 172

This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269

>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C

 Score = 45.7 bits (109), Expect = 3e-06
 Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 45/125 (36%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQH 78
           E G  LAI+GPSG+GK+TL   I   ++    G++ L+G ++ +   N +    G++PQ 
Sbjct: 26  EPGESLAIIGPSGSGKSTLARLILGLLR-PTSGRVRLDGADISQWDPNELGDHVGYLPQD 84

Query: 79  DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERK 138
           D      ++ E                                        N+LSGG+R+
Sbjct: 85  DELFSG-SIAE----------------------------------------NILSGGQRQ 103

Query: 139 RVALA 143
           R+ LA
Sbjct: 104 RLGLA 108

This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173

>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 9/131 (6%)

Query: 16  SLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG---LEVEKNLMVKVS 72
            LS    +G +L ++GP+GAGK+TLLA ++  + G   G I   G          + +  
Sbjct: 14  PLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG--SGSIQFAGQPLEAWSAAELARHR 71

Query: 73  GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVL 132
            ++ Q       + V +++T    L           A  ++ + + LGL       +N L
Sbjct: 72  AYLSQQQTPPFAMPVFQYLT----LHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQL 127

Query: 133 SGGERKRVALA 143
           SGGE +RV LA
Sbjct: 128 SGGEWQRVRLA 138

Length = 248

>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein

 Score = 46.4 bits (110), Expect = 3e-06
 Identities = 37/126 (29%), Positives = 65/126 (51%), Gaps = 10/126 (7%)

Query: 24  GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV----EKNLMV--KVSGFVPQ 77
           G +  ++G SGAGK+TL+ C++  ++    G ++++G ++       L    +  G + Q
Sbjct: 31  GQIYGVIGASGAGKSTLIRCVNL-LERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQ 89

Query: 78  HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGER 137
           H   + + TV  ++ L   L    N    E  R V  LL  +GL    +S  + LSGG++
Sbjct: 90  HFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQK 146

Query: 138 KRVALA 143
           +RVA+A
Sbjct: 147 QRVAIA 152

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343

>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 10/131 (7%)

Query: 15  ESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK--NLMVKVS 72
           E LS    +G  L + GP+G GKTTLL  ++  +     G++  NG  + +  +   +  
Sbjct: 17  EGLSFTLNAGEALQVTGPNGIGKTTLLRILAG-LLRPDSGEVRWNGTALAEQRDEPHRNI 75

Query: 73  GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVL 132
            ++         L+  E++   A +       H    RT++  L  +GL   ++     L
Sbjct: 76  LYLGHLPGLKPELSALENLHFWAAI-------HGGAQRTIEDALAAVGLTGFEDLPAAQL 128

Query: 133 SGGERKRVALA 143
           S G+++R+ALA
Sbjct: 129 SAGQQRRLALA 139

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198

>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter

 Score = 45.7 bits (109), Expect = 4e-06
 Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 26/141 (18%)

Query: 14  KESLSGIA---ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL--- 67
           K  L  I+   + G +   +GP+GAGKTT +  I   I+ D  G+I  +G   +KN+   
Sbjct: 13  KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDS-GEITFDGKSYQKNIEAL 71

Query: 68  -----MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL 122
                +++  GF P        LT  E++ L+ARL   R        + +D +L  +GL 
Sbjct: 72  RRIGALIEAPGFYPN-------LTARENLRLLARLLGIRK-------KRIDEVLDVVGLK 117

Query: 123 KCKNSVLNVLSGGERKRVALA 143
                 +   S G ++R+ +A
Sbjct: 118 DSAKKKVKGFSLGMKQRLGIA 138

The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208

>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

 Score = 46.0 bits (110), Expect = 4e-06
 Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 10/140 (7%)

Query: 14  KESLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDV-DGQILLNG---LEVEKN 66
           KE L G+    + G + AIMGP+G+GK+TL   I    + +V +G+IL +G   LE+  +
Sbjct: 17  KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPD 76

Query: 67  LMVKVSGFVP-QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGL-LKC 124
              +   F+  Q+ + +  +T  + +      +        E  + +    + LGL  + 
Sbjct: 77  ERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEF 136

Query: 125 KNSVLNV-LSGGERKRVALA 143
               +N   SGGE+KR  + 
Sbjct: 137 LERYVNEGFSGGEKKRNEIL 156

Length = 251

>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 37/128 (28%), Positives = 68/128 (53%), Gaps = 11/128 (8%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS---GFVPQH 78
             G  L ++GPSG+GKTT +  I++ I+    G+I ++G ++ +   V++    G+V Q 
Sbjct: 25  AKGEFLVLIGPSGSGKTTTMKMINRLIEPT-SGEIFIDGEDIREQDPVELRRKIGYVIQQ 83

Query: 79  DLTVDTLTVHEHMTLMARL-KMDRNLHHVERARTVDALLKELGL--LKCKNSVLNVLSGG 135
                 +TV E++ L+ +L K  +     +     D LL  +GL   +  +   + LSGG
Sbjct: 84  IGLFPHMTVEENIALVPKLLKWPKE----KIRERADELLALVGLDPAEFADRYPHELSGG 139

Query: 136 ERKRVALA 143
           +++RV +A
Sbjct: 140 QQQRVGVA 147

OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242

>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 11/129 (8%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-------NLMVKVSGF 74
           E G +  IMG SG+GK+TL+  ++ R+     G+IL++G ++ K        L  K    
Sbjct: 52  EEGEIFVIMGLSGSGKSTLVRLLN-RLIEPTRGEILVDGKDIAKLSAAELRELRRKKISM 110

Query: 75  VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSG 134
           V Q    +   TV E++     +   + +   ER       L+ +GL    +   N LSG
Sbjct: 111 VFQSFALLPHRTVLENVAFGLEV---QGVPKAEREERALEALELVGLEGYADKYPNELSG 167

Query: 135 GERKRVALA 143
           G ++RV LA
Sbjct: 168 GMQQRVGLA 176

Length = 386

>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE

 Score = 45.6 bits (109), Expect = 4e-06
 Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 16/130 (12%)

Query: 21  AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVS-GFVP 76
              G +  ++G +G GKTTLL  +   +     G I L+G ++ K   +   +    +VP
Sbjct: 23  VPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK-SGSIRLDGEDITKLPPHERARAGIAYVP 81

Query: 77  QHDLTVDTLTVHEH-MTLMARLKMDRNLHHVERARTVDALLKEL--GLLKCKNSVLNVLS 133
           Q       LTV E+ +T +A L          R+R +   + EL   L +        LS
Sbjct: 82  QGREIFPRLTVEENLLTGLAALP--------RRSRKIPDEIYELFPVLKEMLGRRGGDLS 133

Query: 134 GGERKRVALA 143
           GG+++++A+A
Sbjct: 134 GGQQQQLAIA 143

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230

>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional

 Score = 45.5 bits (108), Expect = 6e-06
 Identities = 39/142 (27%), Positives = 75/142 (52%), Gaps = 15/142 (10%)

Query: 8   FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL 67
           FG     ++L+   + G+++ ++GPSG GKTT+L  ++  ++   +GQI ++G +V    
Sbjct: 16  FGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAG-LEKPTEGQIFIDGEDVTHRS 74

Query: 68  MVKVSGFVPQHDLTV--DTLTVHEHMTLMAR----LKMDRNLHHVERARTVDALLKELGL 121
                  + Q D+ +   +  +  HM+L       LKM   +   ER + V   L+ + L
Sbjct: 75  -------IQQRDICMVFQSYALFPHMSLGENVGYGLKM-LGVPKEERKQRVKEALELVDL 126

Query: 122 LKCKNSVLNVLSGGERKRVALA 143
              ++  ++ +SGG+++RVALA
Sbjct: 127 AGFEDRYVDQISGGQQQRVALA 148

Length = 351

>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 44.9 bits (106), Expect = 8e-06
 Identities = 38/127 (29%), Positives = 58/127 (45%), Gaps = 13/127 (10%)

Query: 24  GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE----KNLMVKVSGFVPQHD 79
           G  +AI GPSG GK+TLL  ++  I     G +L  G +V     +    +VS       
Sbjct: 29  GEFIAITGPSGCGKSTLLKIVASLISPT-SGTLLFEGEDVSTLKPEAYRQQVSYCAQTPA 87

Query: 80  LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGL-LKCKNSVLNVLSGGERK 138
           L  D  TV +++    +++  R     +RA  +D LL    L        +  LSGGE++
Sbjct: 88  LFGD--TVEDNLIFPWQIRNRR----PDRAAALD-LLARFALPDSILTKNITELSGGEKQ 140

Query: 139 RVALAVQ 145
           R+AL   
Sbjct: 141 RIALIRN 147

Length = 223

>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional

 Score = 45.4 bits (107), Expect = 8e-06
 Identities = 36/127 (28%), Positives = 68/127 (53%), Gaps = 7/127 (5%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQH-DL 80
           E G +  IMG SG+GK+T++  +++ I+    GQ+L++G+++ K    ++     +   +
Sbjct: 52  EEGEIFVIMGLSGSGKSTMVRLLNRLIE-PTRGQVLIDGVDIAKISDAELREVRRKKIAM 110

Query: 81  TVDTLTVHEHMTLMARLKMDRNLHHV----ERARTVDALLKELGLLKCKNSVLNVLSGGE 136
              +  +  HMT++        L  +     R + +DA L+++GL    +S  + LSGG 
Sbjct: 111 VFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDA-LRQVGLENYAHSYPDELSGGM 169

Query: 137 RKRVALA 143
           R+RV LA
Sbjct: 170 RQRVGLA 176

Length = 400

>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein

 Score = 45.5 bits (108), Expect = 9e-06
 Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 34/148 (22%)

Query: 16  SLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGL---EVEKNLMV 69
           +L G+      G  +A++GPSGAGK+TL   +  R      G+ILL+G+   +++   + 
Sbjct: 355 ALDGLNLTVRPGETVALVGPSGAGKSTLFQLL-LRFYDPQSGRILLDGVDLRQLDPAELR 413

Query: 70  KVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERA--------------RTVDAL 115
                VPQ D  +   +V E++      + D     VE A                 D  
Sbjct: 414 ARMALVPQ-DPVLFAASVMENIRYG---RPDATDEEVEAAARAAHAHEFISALPEGYDTY 469

Query: 116 LKELGLLKCKNSVLNVLSGGERKRVALA 143
           L E G+          LSGG+R+R+A+A
Sbjct: 470 LGERGV---------TLSGGQRQRIAIA 488

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576

>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 37/129 (28%), Positives = 63/129 (48%), Gaps = 11/129 (8%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS-------GF 74
             G +  IMG SG+GK+T +  +++ I+    GQI ++G  + K   V++        G 
Sbjct: 17  AKGEIFVIMGLSGSGKSTTVRMLNRLIE-PTAGQIFIDGENIMKQSPVELREVRRKKIGM 75

Query: 75  VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSG 134
           V Q       +T+ ++ +L   L         E+A     LLK +GL + ++   + LSG
Sbjct: 76  VFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALE---LLKLVGLEEYEHRYPDELSG 132

Query: 135 GERKRVALA 143
           G ++RV LA
Sbjct: 133 GMQQRVGLA 141

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363

>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 13/138 (9%)

Query: 15  ESLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE---KNLM 68
           E L G+   AE G +LA++G +GAGK+TLL  ++  ++    G +L++G  ++   K L+
Sbjct: 6   EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ-SGAVLIDGEPLDYSRKGLL 64

Query: 69  ---VKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCK 125
               +V       D  +    V + +        +  L   E  R V   L  +G    +
Sbjct: 65  ERRQRVGLVFQDPDDQLFAADVDQDVAFGPL---NLGLSEAEVERRVREALTAVGASGLR 121

Query: 126 NSVLNVLSGGERKRVALA 143
               + LSGGE+KRVA+A
Sbjct: 122 ERPTHCLSGGEKKRVAIA 139

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190

>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 19/128 (14%)

Query: 24  GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK--------NLMVKVSGFV 75
           G + A++G SG GK+TLL  ++   +    GQI+L+G+++          N+M +     
Sbjct: 45  GEIFALLGASGCGKSTLLRMLAG-FEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALF 103

Query: 76  PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGG 135
           P        +TV +++     LK D+ L   E A  V+ +L  + + +      + LSGG
Sbjct: 104 PH-------MTVEQNIAF--GLKQDK-LPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGG 153

Query: 136 ERKRVALA 143
           +R+RVALA
Sbjct: 154 QRQRVALA 161

Length = 377

>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 39/159 (24%), Positives = 75/159 (47%), Gaps = 24/159 (15%)

Query: 2   ETFHPLFGDTNYKESLSGIA---ESGSLLAIMGPSGAGKTTLLACI--------SQRIQG 50
           E  +  +G+   KE+L  I        + A++GPSG GK+TLL  +          RI+G
Sbjct: 5   ENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEG 61

Query: 51  DV--DGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER 108
            V  DGQ + +  +++   + +  G V Q       +++++++    RL   ++   ++ 
Sbjct: 62  KVLFDGQDIYDK-KIDVVELRRRVGMVFQK-PNPFPMSIYDNIAYGPRLHGIKDKKELDE 119

Query: 109 ARTVDALLKELGLLKCKNSVLNV----LSGGERKRVALA 143
              V+  LK+  L       L+     LSGG+++R+ +A
Sbjct: 120 I--VEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIA 156

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 44.4 bits (106), Expect = 2e-05
 Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 16/132 (12%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS-----GFVP 76
             G + A++G +GAGK+TL+  +S     D  G+IL++G  V      + +       V 
Sbjct: 32  RPGEVHALLGENGAGKSTLMKILSGVYPPD-SGEILIDGKPVA-FSSPRDALAAGIATVH 89

Query: 77  QHDLTVDTLTVHEHMTLMARLK-----MDRNLHHVERARTVDALLKELGLLKCKNSVLNV 131
           Q    V  L+V E++ L          +DR      RAR    LL  LGL    ++++  
Sbjct: 90  QELSLVPNLSVAENIFLGREPTRRFGLIDRKAMR-RRAR---ELLARLGLDIDPDTLVGD 145

Query: 132 LSGGERKRVALA 143
           LS  +R+ V +A
Sbjct: 146 LSIAQRQMVEIA 157

Length = 500

>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 43.9 bits (103), Expect = 2e-05
 Identities = 39/133 (29%), Positives = 70/133 (52%), Gaps = 14/133 (10%)

Query: 23  SGSLLAIMGPSGAGKTTLLACISQRIQ-----GDVDGQILLNGLEVEKNLMVKVS---GF 74
           + S+  IMGPSG+GK+TLL  +++ I+       VDG++L  G ++ +   +K+    G 
Sbjct: 35  NNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGM 94

Query: 75  VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV--- 131
           V Q       L++++++     LK        E  + V+  L+++GL K     LN    
Sbjct: 95  VFQQPNPFPHLSIYDNIAY--PLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPAS 152

Query: 132 -LSGGERKRVALA 143
            LSGG+++R+ +A
Sbjct: 153 QLSGGQQQRLTIA 165

Length = 257

>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 43/140 (30%), Positives = 72/140 (51%), Gaps = 17/140 (12%)

Query: 15  ESLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE---KNLM 68
            +L GI    + G + AI+G +GAGK+TL   ++  I     G+IL +G  ++   K LM
Sbjct: 20  HALKGININIKKGEVTAILGGNGAGKSTLFQNLNG-ILKPSSGRILFDGKPIDYSRKGLM 78

Query: 69  --VKVSGFV---PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK 123
              +  G V   P + L   + +V++ ++  A   ++  L   E  + VD  LK  G+  
Sbjct: 79  KLRESVGMVFQDPDNQLF--SASVYQDVSFGA---VNLKLPEDEVRKRVDNALKRTGIEH 133

Query: 124 CKNSVLNVLSGGERKRVALA 143
            K+   + LS G++KRVA+A
Sbjct: 134 LKDKPTHCLSFGQKKRVAIA 153

Length = 283

>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 17/130 (13%)

Query: 24  GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLE---VEKNLMVKVSGFVPQHDL 80
           G  LAI+GPSG+GK+TL   I   I     G + L+G +    ++    K  G++PQ D+
Sbjct: 344 GEALAIIGPSGSGKSTLARLIVG-IWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQ-DV 401

Query: 81  TVDTLTVHEHMTLMARLKMDRNLHH---VERARTVDALLKELGLLKCKNSVLNV----LS 133
            +   TV E+   +AR     N      +E A+        L L    ++V+      LS
Sbjct: 402 ELFPGTVAEN---IAR--FGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLS 456

Query: 134 GGERKRVALA 143
           GG+R+R+ALA
Sbjct: 457 GGQRQRIALA 466

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544

>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional

 Score = 43.8 bits (103), Expect = 2e-05
 Identities = 37/138 (26%), Positives = 71/138 (51%), Gaps = 17/138 (12%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDG----QILLNGLEVEKNLMVKV------ 71
             G ++A++GPSG+GK+TLL  +S  I GD       ++L   ++ E  L   +      
Sbjct: 28  HHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRAN 87

Query: 72  SGFVPQHDLTVDTLTVHEHMTLMARLKMD------RNLHHVERARTVDALLKELGLLKCK 125
           +G++ Q    V+ L+V E++ + A                 ++ R + AL + +G++   
Sbjct: 88  TGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTR-VGMVHFA 146

Query: 126 NSVLNVLSGGERKRVALA 143
           +  ++ LSGG+++RVA+A
Sbjct: 147 HQRVSTLSGGQQQRVAIA 164

Length = 262

>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 22/143 (15%)

Query: 23  SGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHD--- 79
            GS+ A++G +G+GK+TL   +   ++    G+I + G    + L   +  +VPQ +   
Sbjct: 32  GGSIAALVGVNGSGKSTLFKALMGFVRL-ASGKISILGQPTRQALQKNLVAYVPQSEEVD 90

Query: 80  -----LTVDTLTV--HEHMTLMARLKM-DRNLHHVERARTVDALLKELGLLKCKNSVLNV 131
                L  D + +  + HM  + R K  DR +        V A L  + +++ ++  +  
Sbjct: 91  WSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQI--------VTAALARVDMVEFRHRQIGE 142

Query: 132 LSGGERKRVALAVQTIIVQSGFV 154
           LSGG++KRV LA    I Q G V
Sbjct: 143 LSGGQKKRVFLA--RAIAQQGQV 163

Length = 272

>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 29/138 (21%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVD---GQILLNGLEV----EKNLMVKVSGF 74
             G  +AI+G SG+GK+TLL    Q + G  D   G I LNG+E+    E+ L   +S  
Sbjct: 362 AQGEKVAILGRSGSGKSTLL----QLLAGAWDPQQGSITLNGVEIASLDEQALRETIS-V 416

Query: 75  VPQHDLTVDTLTVHEHMTL---------MARLKMDRNLHHVERARTVDALLKELGLLKCK 125
           + Q        T+ +++ L         +        L  +  +   D L   LG    +
Sbjct: 417 LTQRVHLFSG-TLRDNLRLANPDASDEELWAALQQVGLEKLLESAP-DGLNTWLGEGGRR 474

Query: 126 NSVLNVLSGGERKRVALA 143
                 LSGGER+R+ALA
Sbjct: 475 ------LSGGERRRLALA 486

Length = 573

>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 43.7 bits (104), Expect = 3e-05
 Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 23/141 (16%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGD----VDGQILLNG---LEVEKNLMVKVSG- 73
           + G +L I+G SG+GK+ L   I   +       V G+IL +G   L + +  + K+ G 
Sbjct: 29  KKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGK 88

Query: 74  ---FVPQHDLTV--DTLTVHEHM--TLMARLKMDRNLHHVERARTVDALLKELGLLKCKN 126
               + Q  +T     +T+ + +   L    K        ERA     LL+ +G +    
Sbjct: 89  EIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAI---ELLELVG-IPDPE 144

Query: 127 SVLNV----LSGGERKRVALA 143
             L      LSGG R+RV +A
Sbjct: 145 RRLKSYPHELSGGMRQRVMIA 165

Length = 316

>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional

 Score = 43.7 bits (103), Expect = 4e-05
 Identities = 19/57 (33%), Positives = 34/57 (59%)

Query: 147 IIVQSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKC 203
           I+ ++GFV Q D+    LTV E +   + L++ ++L   E+    ++++ ELGL KC
Sbjct: 138 ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKC 194

Length = 659

>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 42.7 bits (100), Expect = 4e-05
 Identities = 43/164 (26%), Positives = 85/164 (51%), Gaps = 18/164 (10%)

Query: 1   METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQR----IQGDVDGQI 56
           +E  +  FG  +  + +S      S+ AI+GPSG GK+T+L  I++         V G+I
Sbjct: 7   LEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKI 66

Query: 57  LLNGLEVEKNLMVKVS-----GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 111
           LL+  ++    +  VS     G V Q       ++++++  ++A  K++  ++  E    
Sbjct: 67  LLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDN--VIAGYKLNGRVNRSEADEI 124

Query: 112 VDALLKELGLL-----KCKNSVLNVLSGGERKRVALAVQTIIVQ 150
           V++ LK + L      + K++ +  LSGG+++R+ +A +TI V+
Sbjct: 125 VESSLKRVALWDEVKDRLKSNAME-LSGGQQQRLCIA-RTIAVK 166

Length = 252

>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 42.5 bits (101), Expect = 5e-05
 Identities = 40/135 (29%), Positives = 70/135 (51%), Gaps = 21/135 (15%)

Query: 28  AIMGPSGAGKTTLLACI--------SQRIQGDV--DGQILLNGLEVEKNLMVKVSGFVPQ 77
           A++GPSG GK+TLL C+          R++G+V  DG+ + +  +V+   + +  G V Q
Sbjct: 37  ALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDP-KVDVVELRRRVGMVFQ 95

Query: 78  HDLTVDTLTVHEHMTLMARL--KMDRNLHH-VERARTVDALLKELGLLKCKNSVLNVLSG 134
                  +++++++    RL    D+ L   VE +    AL  E+   +   S L  LSG
Sbjct: 96  K-PNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVK-DRLHKSALG-LSG 152

Query: 135 GERKRV----ALAVQ 145
           G+++R+    ALAV+
Sbjct: 153 GQQQRLCIARALAVK 167

Length = 253

>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 42.6 bits (100), Expect = 5e-05
 Identities = 42/156 (26%), Positives = 76/156 (48%), Gaps = 16/156 (10%)

Query: 1   METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQ---RIQG-DVDGQI 56
           +E F   +G+    ++++       + AI+GPSG GKTTLL  I++    I G  V+G+I
Sbjct: 6   IENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKI 65

Query: 57  LLNGLEVEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 111
              G ++           K  G V Q       +++++++    R+   ++ H ++  R 
Sbjct: 66  YFKGQDIYDPQLDVTEYRKKVGMVFQKPTPF-PMSIYDNVAFGPRIHGVKSKHKLD--RI 122

Query: 112 VDALLKELGLLKCKNSVLN----VLSGGERKRVALA 143
           V+  LK+  L     S LN     LSGG+++R+ +A
Sbjct: 123 VEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIA 158

Length = 250

>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein

 Score = 42.5 bits (100), Expect = 5e-05
 Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 19/134 (14%)

Query: 21  AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV---EKNLMVKVSGFVPQ 77
           A  GSL  ++GP+G+GK+TLL  ++  ++ D  G + L G+++    +    +    V Q
Sbjct: 24  APPGSLTGLLGPNGSGKSTLLRLLAGALRPD-AGTVDLAGVDLHGLSRRARARRVALVEQ 82

Query: 78  HDLTVDTLTVHE--------HMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVL 129
              T   LTV +        H +L A             A  VD  L    L    +  +
Sbjct: 83  DSDTAVPLTVRDVVALGRIPHRSLWA-------GDSPHDAAVVDRALARTELSHLADRDM 135

Query: 130 NVLSGGERKRVALA 143
           + LSGGER+RV +A
Sbjct: 136 STLSGGERQRVHVA 149

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 42.8 bits (101), Expect = 7e-05
 Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 16/150 (10%)

Query: 5   HPLFGDTNYKESLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGL 61
           +  F     K  L  I    E G  +AI+GPSG+GK+TL+  + +       G+IL++G+
Sbjct: 333 NVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT-SGEILIDGI 391

Query: 62  EVE----KNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLK 117
           ++      +L  ++ G V Q  L     T+ E++ L      D  +      +  +A   
Sbjct: 392 DIRDISLDSLRKRI-GIVSQDPLLFSG-TIRENIALGRPDATDEEIEEA--LKLANAHEF 447

Query: 118 ELGLLKCKNSVLNV----LSGGERKRVALA 143
              L    ++++      LSGG+R+R+A+A
Sbjct: 448 IANLPDGYDTIVGERGVNLSGGQRQRLAIA 477

Length = 567

>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein

 Score = 41.7 bits (98), Expect = 8e-05
 Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 12/131 (9%)

Query: 15  ESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSG- 73
             LS    +G  L + GP+G+GKTTLL  ++        G++LLNG  ++        G 
Sbjct: 17  SGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL-AGRVLLNGGPLDFQRDSIARGL 75

Query: 74  -FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVL 132
            ++        TL+V E++        D           V+  L  +GL   ++  +  L
Sbjct: 76  LYLGHAPGIKTTLSVLENLRFWHADHSD---------EQVEEALARVGLNGFEDRPVAQL 126

Query: 133 SGGERKRVALA 143
           S G+++RVALA
Sbjct: 127 SAGQQRRVALA 137

CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 23/136 (16%)

Query: 28  AIMGPSGAGKTTLLACISQRIQGDVDGQI-LLNGLEVE---------KNLMVK---VSGF 74
            ++G +GAGK+TLL  ++  ++ D  G++    GL V              V    + GF
Sbjct: 33  GLVGRNGAGKSTLLKILAGELEPD-SGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGF 91

Query: 75  VPQHDLTVD-----TLTVHEHMTLMARL--KMDRNLHHVERARTVDALLKELGLLKCKNS 127
               +L  +      L       L+A L   ++        AR  +  L  LG    ++ 
Sbjct: 92  GELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEAR-AEEALLGLGFPD-EDR 149

Query: 128 VLNVLSGGERKRVALA 143
            ++ LSGG R+RVALA
Sbjct: 150 PVSSLSGGWRRRVALA 165

Length = 530

>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 7/127 (5%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGL---EVEKNLMVKVSGFVPQH 78
             G  +AI+G SG+GK+TLL  +   +     G+ILL+G+   +++   + +  G+V Q 
Sbjct: 497 PPGEKVAIVGRSGSGKSTLLKLL-LGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQD 555

Query: 79  DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKEL--GLLKCKNSVLNVLSGGE 136
                  ++ E++ L      D  +    +       ++ L  G           LSGG+
Sbjct: 556 PFLFSG-SIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQ 614

Query: 137 RKRVALA 143
           R+R+ALA
Sbjct: 615 RQRLALA 621

Length = 709

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 40.4 bits (94), Expect = 1e-04
 Identities = 13/38 (34%), Positives = 23/38 (60%)

Query: 23 SGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG 60
           G ++ I+GP G+GKTTL   +++ +     G I ++G
Sbjct: 1  PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDG 38

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 37/130 (28%)

Query: 24  GSLLAIMGPSGAGKTT---LLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQ--- 77
           G ++ I+GP+G GKTT   LLA + +  +G+VD +             +K+S + PQ   
Sbjct: 365 GEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKIS-YKPQYIK 410

Query: 78  --HDLTVDTLTVHEHMTLM-ARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSG 134
             +D TV+ L       L      +  + +  E       ++K L L +  +  +  LSG
Sbjct: 411 PDYDGTVEDL-------LRSITDDLGSSYYKSE-------IIKPLQLERLLDKNVKDLSG 456

Query: 135 GERKRVALAV 144
           GE +RVA+A 
Sbjct: 457 GELQRVAIAA 466

Length = 590

>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 4/141 (2%)

Query: 8   FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL 67
           +GD      LS     G    ++GP+GAGK+T+   +   I  D     +L      +  
Sbjct: 14  YGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRAR 73

Query: 68  MVKVS-GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKN 126
           + +V+ G VPQ D      TV E++ +  R      +   E    + +LL+   L    +
Sbjct: 74  LARVAIGVVPQFDNLDPEFTVRENLLVFGRY---FGMSTREIEAVIPSLLEFARLESKAD 130

Query: 127 SVLNVLSGGERKRVALAVQTI 147
             + +LSGG ++R+ LA   I
Sbjct: 131 VRVALLSGGMKRRLTLARALI 151

This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303

>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 19/132 (14%)

Query: 24  GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE----KNLMVKVSGFVPQHD 79
           G +  ++G +G+GK+TLL  +  R Q   +G+ILL+   +E    K    KV+ ++PQ  
Sbjct: 37  GKVTGLIGHNGSGKSTLLKMLG-RHQPPSEGEILLDAQPLESWSSKAFARKVA-YLPQQ- 93

Query: 80  LTVDTLTVHEHMTLMARLKMDRNLHH-------VERARTVDALLKELGLLKCKNSVLNVL 132
                L   E MT+   + + R   H             V+  +  +GL    + +++ L
Sbjct: 94  -----LPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSL 148

Query: 133 SGGERKRVALAV 144
           SGGER+R  +A+
Sbjct: 149 SGGERQRAWIAM 160

Length = 265

>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 30/126 (23%), Positives = 48/126 (38%), Gaps = 45/126 (35%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLT 81
           + G  L ++G SG GK+TL   I   ++    G+IL  G ++                  
Sbjct: 37  KEGETLGLVGESGCGKSTLGRLIL-GLEEPTSGEILFEGKDI------------------ 77

Query: 82  VDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV----LSGGER 137
                           K+ +     ER   V  LL+++GL       L      LSGG+R
Sbjct: 78  ---------------TKLSKE----ERRERVLELLEKVGL---PEEFLYRYPHELSGGQR 115

Query: 138 KRVALA 143
           +R+ +A
Sbjct: 116 QRIGIA 121

Length = 268

>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 6/46 (13%)

Query: 6   PLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD 51
           PLF      ++L+ + E+G  LAI+G +G GKTTLL  +   ++ D
Sbjct: 333 PLF------KNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPD 372

Length = 530

>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 10/72 (13%)

Query: 2  ETFHPLFGDTNYKESLSGIA---ESGSLLAIMGPSGAGKTTLLACISQ---RIQG-DVDG 54
          +  H  +G    KE++ GI    E   + A++GPSG+GK+T L  +++    I    V G
Sbjct: 24 KDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTG 80

Query: 55 QILLNGLEVEKN 66
          QIL  G+++ + 
Sbjct: 81 QILYRGIDINRK 92

Length = 267

>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 39/128 (30%), Positives = 64/128 (50%), Gaps = 14/128 (10%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG--LEVEKNLMVKVSGFVPQHD 79
             G  +A++GP+GAGK+TL + +++      +GQI + G  L       +   G V Q  
Sbjct: 25  RPGRFVALLGPNGAGKSTLFSLLTRLYVAQ-EGQISVAGHDLRRAPRAALARLGVVFQQP 83

Query: 80  LTVDT-LTVHEHMTLMARLKMDRNLHHVERART---VDALLKELGLLKCKNSVLNVLSGG 135
            T+D  L+V +++   A       LH + RA     +  LL  LGL +  +  +  L+GG
Sbjct: 84  -TLDLDLSVRQNLRYHA------ALHGLSRAEARARIAELLARLGLAERADDKVRELNGG 136

Query: 136 ERKRVALA 143
            R+RV +A
Sbjct: 137 HRRRVEIA 144

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236

>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 35/148 (23%)

Query: 15  ESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGF 74
           E +S  A+ G  +AI+GP+GAGK+TL+  + QR+     G+IL++G ++           
Sbjct: 352 EDVSFEAKPGQTVAIVGPTGAGKSTLINLL-QRVFDPQSGRILIDGTDIR---------- 400

Query: 75  VPQHDLTVDTL-----TVHEHMTLMARLKMDRNLH-------------HVERARTVDALL 116
                +T  +L      V +   L  R   D N+                ERA+  D + 
Sbjct: 401 ----TVTRASLRRNIAVVFQDAGLFNRSIED-NIRVGRPDATDEEMRAAAERAQAHDFIE 455

Query: 117 -KELGLLKCKNSVLNVLSGGERKRVALA 143
            K  G           LSGGER+R+A+A
Sbjct: 456 RKPDGYDTVVGERGRQLSGGERQRLAIA 483

Length = 588

>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 11/66 (16%)

Query: 24 GSLLAIMGPSGAGKTTLLACISQRI---QGDV-----DGQI--LLNGLEVEKNLMVKVS- 72
          G +L I+G SG+GKTTLL CIS R+    G V     DGQ   L    E E+  +++   
Sbjct: 32 GEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEW 91

Query: 73 GFVPQH 78
          GFV Q+
Sbjct: 92 GFVHQN 97

Length = 258

>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 33/129 (25%), Positives = 67/129 (51%), Gaps = 11/129 (8%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLE---VEKNLMVKVSGFVPQH 78
           + G ++ I+G SG+GK+TL   I QR     +G++L++G +    +   + +  G V Q 
Sbjct: 26  KPGEVVGIVGRSGSGKSTLTKLI-QRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQE 84

Query: 79  DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV----LSG 134
           ++  +  ++ +++ L A   M      +E A+   A      L +  ++++      LSG
Sbjct: 85  NVLFNR-SIRDNIAL-ADPGMSME-RVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSG 141

Query: 135 GERKRVALA 143
           G+R+R+A+A
Sbjct: 142 GQRQRIAIA 150

The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237

>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 33/127 (25%), Positives = 52/127 (40%), Gaps = 47/127 (37%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVD---GQILLNGLEVE--KNLMVKVSGFVP 76
           + G  +A++G SG+GK+TLL    Q + GD+    G+I L+G+ V   +  +  +   + 
Sbjct: 26  KQGEKIALLGRSGSGKSTLL----QLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLN 81

Query: 77  QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGE 136
           Q     DT       TL                                N++    SGGE
Sbjct: 82  QRPYLFDT-------TLR-------------------------------NNLGRRFSGGE 103

Query: 137 RKRVALA 143
           R+R+ALA
Sbjct: 104 RQRLALA 110

The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178

>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 39.9 bits (93), Expect = 4e-04
 Identities = 36/146 (24%), Positives = 71/146 (48%), Gaps = 10/146 (6%)

Query: 8   FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ----GDVDGQILLNGLEV 63
           FG     + ++      ++ A+MGPSG+GK+TLL   ++ I+      V G++ L+G ++
Sbjct: 13  FGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDI 72

Query: 64  EKNLMVKVSGFVP---QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELG 120
            K  ++++   V    Q    +  L++ E++ L  +L          + R   AL K   
Sbjct: 73  FKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQL 132

Query: 121 LLKCKNSV---LNVLSGGERKRVALA 143
             + K+ +      LSGG+++R+ +A
Sbjct: 133 WDEVKDRLDAPAGKLSGGQQQRLCIA 158

Length = 250

>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 16/126 (12%)

Query: 24  GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQHDL 80
           G  ++++G SG GK+TLL  IS   Q    G ++L G ++ +   + MV     V Q+  
Sbjct: 11  GEFISLIGHSGCGKSTLLNLISGLAQ-PTSGGVILEGKQITEPGPDRMV-----VFQNYS 64

Query: 81  TVDTLTVHEHMTLMARLKMDRNLHHV---ERARTVDALLKELGLLKCKNSVLNVLSGGER 137
            +  LTV E++     L +DR L  +   ER   V+  +  +GL +  +     LSGG +
Sbjct: 65  LLPWLTVRENIA----LAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMK 120

Query: 138 KRVALA 143
           +RVA+A
Sbjct: 121 QRVAIA 126

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230

>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 13/137 (9%)

Query: 15  ESLSGIA---ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV----EKNL 67
           ++L G++     GS  A++GP+GAGK+TLL  ++  I     G++ + G EV    EK +
Sbjct: 19  KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNG-IYLPQRGRVKVMGREVNAENEKWV 77

Query: 68  MVKVSGFVPQH-DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKN 126
             KV G V Q  D  V + TV + +        +  L   E  R V+  LK + +   ++
Sbjct: 78  RSKV-GLVFQDPDDQVFSSTVWDDVAFGPV---NMGLDKDEVERRVEEALKAVRMWDFRD 133

Query: 127 SVLNVLSGGERKRVALA 143
                LS G++KRVA+A
Sbjct: 134 KPPYHLSYGQKKRVAIA 150

Length = 274

>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins

 Score = 39.4 bits (93), Expect = 6e-04
 Identities = 16/47 (34%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 17 LSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV 63
          LS     G  +A++G SG GK+T+++ + +R      G+ILL+G+++
Sbjct: 22 LSLTIPPGKTVALVGSSGCGKSTVVSLL-ERFYDPTSGEILLDGVDI 67

MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238

>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional

 Score = 39.1 bits (92), Expect = 7e-04
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 11/66 (16%)

Query: 24 GSLLAIMGPSGAGKTTLLACISQRI---QGDV-----DGQIL-LNGL-EVEKNLMVKVS- 72
          G +L I+G SG+GKTTLL  +S R+    G+V     DGQ+  L  L E E+  +++   
Sbjct: 32 GEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEW 91

Query: 73 GFVPQH 78
          GFV QH
Sbjct: 92 GFVHQH 97

Length = 258

>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional

 Score = 39.0 bits (91), Expect = 7e-04
 Identities = 42/134 (31%), Positives = 64/134 (47%), Gaps = 21/134 (15%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVD----GQILLNGLEVEK-------NLMVK 70
             G ++AI+G SG+GK+TLL      + G +D    G ++ NG  + K        L  +
Sbjct: 33  GEGEMMAIVGSSGSGKSTLL-----HLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQ 87

Query: 71  VSGFVPQ-HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVL 129
             GF+ Q H L  D  T  E++ +   +   +      RA     +L  +GL    N   
Sbjct: 88  KLGFIYQFHHLLPD-FTALENVAMPLLIGKKKPAEINSRALE---MLAAVGLEHRANHRP 143

Query: 130 NVLSGGERKRVALA 143
           + LSGGER+RVA+A
Sbjct: 144 SELSGGERQRVAIA 157

Length = 233

>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 39.2 bits (91), Expect = 7e-04
 Identities = 41/149 (27%), Positives = 74/149 (49%), Gaps = 15/149 (10%)

Query: 8   FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ----GDVDGQILLNGLE- 62
           +GD    ++++   + G++ A++GPSG GKTT L  I++         V G+ILL+G + 
Sbjct: 14  YGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDI 73

Query: 63  ----VEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHV----ERARTVDA 114
               V+   M +  G V Q      T++V +++    +L   R+  H+    ER+    A
Sbjct: 74  YGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAA 133

Query: 115 LLKELGLLKCKNSVLNVLSGGERKRVALA 143
           L  E+       +    LSGG+++R+ +A
Sbjct: 134 LWDEVK--DRLKTPATGLSGGQQQRLCIA 160

Length = 252

>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C

 Score = 39.1 bits (92), Expect = 7e-04
 Identities = 41/140 (29%), Positives = 63/140 (45%), Gaps = 37/140 (26%)

Query: 24  GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGL---EVEKNLMVKVSGFVPQHDL 80
           G  +AI+GPSG+GK+T+L  +  R      G IL++G    EV  + + +  G VPQ   
Sbjct: 27  GKKVAIVGPSGSGKSTILRLLF-RFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQ--- 82

Query: 81  TVDTLTVHEHMTLMARLK---MDRNLHHVERARTV--------------DALLKELGLLK 123
             DT+  ++  T+   ++    D     V  A                 D ++ E GL  
Sbjct: 83  --DTVLFND--TIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLK- 137

Query: 124 CKNSVLNVLSGGERKRVALA 143
                   LSGGE++RVA+A
Sbjct: 138 --------LSGGEKQRVAIA 149

ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236

>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

 Score = 38.9 bits (91), Expect = 7e-04
 Identities = 28/126 (22%), Positives = 61/126 (48%), Gaps = 9/126 (7%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLT 81
              S+  ++GP+GAGK+TLL  I+  ++    G+I+ +G    +  + K+          
Sbjct: 24  PKNSVYGLLGPNGAGKSTLLKMITGILRPT-SGEIIFDGHPWTRKDLHKIGSL------- 75

Query: 82  VDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVA 141
           +++  ++E++T    LK+   L  +  +R +D +L  + L           S G ++R+ 
Sbjct: 76  IESPPLYENLTARENLKVHTTLLGLPDSR-IDEVLNIVDLTNTGKKKAKQFSLGMKQRLG 134

Query: 142 LAVQTI 147
           +A+  +
Sbjct: 135 IAIALL 140

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223

>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 39/164 (23%), Positives = 63/164 (38%), Gaps = 60/164 (36%)

Query: 13  YKESLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGL---EVEKN 66
            +  L+GI      G  +AI+G SGAGK+T+L  + +    +  G I ++G    +V + 
Sbjct: 275 RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN-SGSITIDGQDIRDVTQQ 333

Query: 67  LMVKVSGFVPQ-HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV------------- 112
            + +  G VPQ   L  DT+                  ++++  R               
Sbjct: 334 SLRRAIGIVPQDTVLFNDTI-----------------AYNIKYGRPDATAEEVGAAAEAA 376

Query: 113 -------------DALLKELGLLKCKNSVLNVLSGGERKRVALA 143
                        D  + E GL          LSGGE++RVA+A
Sbjct: 377 QIHDFIQSLPEGYDTGVGERGLK---------LSGGEKQRVAIA 411

Length = 497

>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor

 Score = 38.9 bits (91), Expect = 9e-04
 Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 17/120 (14%)

Query: 24  GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVD 83
             ++ I+GP+G GKTT +  ++  ++ D +G I +         +  VS + PQ+     
Sbjct: 25  SEVIGILGPNGIGKTTFIKMLAGVLKPD-EGDIEI--------ELDTVS-YKPQYIKADY 74

Query: 84  TLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 143
             TV + ++ + +          E       + K L + +  +  +  LSGGE +RVA+A
Sbjct: 75  EGTVRDLLSSITKDFYTHPYFKTE-------IAKPLQIEQILDREVPELSGGELQRVAIA 127

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246

>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C

 Score = 38.8 bits (91), Expect = 9e-04
 Identities = 44/140 (31%), Positives = 70/140 (50%), Gaps = 33/140 (23%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVD-GQILLNGLEVE----KNLMVKVSGFVP 76
            +G  +A++GPSG+GK+TL+  I +    DVD G+IL++G +V      +L  ++ G V 
Sbjct: 26  PAGETVALVGPSGSGKSTLVNLIPRFY--DVDSGRILIDGHDVRDYTLASLRRQI-GLVS 82

Query: 77  QHDLTVDTL----TVHEHMTLMARLKMDRNLHHVERA-RTVDA--LLKEL--GLLKCKNS 127
           Q     D      TV E++              VE A R  +A   + EL  G     ++
Sbjct: 83  Q-----DVFLFNDTVAENIAYGRP---GATREEVEEAARAANAHEFIMELPEGY----DT 130

Query: 128 VLNV----LSGGERKRVALA 143
           V+      LSGG+R+R+A+A
Sbjct: 131 VIGERGVKLSGGQRQRIAIA 150

MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234

>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily

 Score = 38.0 bits (89), Expect = 0.001
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 151 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER-ARTVDALLKELGL 200
             +V Q D+ +  LTV E +T  A L++ R      R  R  D LL++L L
Sbjct: 83  VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLAL 133

The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226

>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein

 Score = 38.7 bits (90), Expect = 0.001
 Identities = 44/154 (28%), Positives = 73/154 (47%), Gaps = 23/154 (14%)

Query: 8   FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV---- 63
           FG     + L+    +G  +A++GPSG+GK+T+L  I   ++   +GQI + G ++    
Sbjct: 10  FGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILR-ILMTLEPIDEGQIQVEGEQLYHMP 68

Query: 64  ----------EKNL--MVKVSGFVPQHDLTVDTLTVHEHMTL--MARLKMDRNLHHVERA 109
                     EK+L  M    G V Q        TV +++T   +  L M R        
Sbjct: 69  GRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARA---EAEK 125

Query: 110 RTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 143
           R ++ LL  +GL    + +   LSGG+++RVA+A
Sbjct: 126 RAME-LLDMVGLADKADHMPAQLSGGQQQRVAIA 158

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252

>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 31/134 (23%)

Query: 23  SGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTV 82
           +G  L I GP+GAGKTTLL  ++  ++ D  G++   G                   +  
Sbjct: 27  AGEALQITGPNGAGKTTLLRILAGLLRPD-AGEVYWQG-----------------EPIQN 68

Query: 83  DTLTVHEH-------------MTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVL 129
              + H+              +T +  L   +  H    A T+   L ++GL   ++  +
Sbjct: 69  VRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPV 128

Query: 130 NVLSGGERKRVALA 143
             LS G+++RVALA
Sbjct: 129 GQLSAGQQRRVALA 142

Length = 209

>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 16/143 (11%)

Query: 8   FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV--EK 65
           +GD      LS    SG    ++GP+GAGK+T+   I      D  G+I + G+ V    
Sbjct: 51  YGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDA-GKITVLGVPVPARA 109

Query: 66  NLMVKVSGFVPQHDLTVDTLTVHEHMTLMAR-LKMDRNLHHVERARTVDAL---LKELGL 121
            L     G VPQ D      TV E++ +  R   M          R ++A+   L E   
Sbjct: 110 RLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGM--------STREIEAVIPSLLEFAR 161

Query: 122 LKCK-NSVLNVLSGGERKRVALA 143
           L+ K ++ ++ LSGG ++R+ LA
Sbjct: 162 LESKADARVSDLSGGMKRRLTLA 184

Length = 340

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 19/121 (15%)

Query: 24  GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVD 83
           G ++ I+GP+G GKTT +  ++        G I  +    E    +KVS + PQ+     
Sbjct: 367 GEVIGILGPNGIGKTTFVKLLA--------GVIKPDEGSEED---LKVS-YKPQYISPDY 414

Query: 84  TLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 143
             TV + +    R     +    E       ++K L L       ++ LSGGE +RVA+A
Sbjct: 415 DGTVEDLLRSAIRSAFGSSYFKTE-------IVKPLNLEDLLERPVDELSGGELQRVAIA 467

Query: 144 V 144
            
Sbjct: 468 A 468

Length = 591

>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 38.4 bits (89), Expect = 0.001
 Identities = 49/191 (25%), Positives = 96/191 (50%), Gaps = 39/191 (20%)

Query: 28  AIMGPSGAGKTTLLACISQR---IQG-DVDGQILLNGLEV-EKNLMV----KVSGFVPQH 78
           A++GPSG GK+T L C+++    I    ++G++LL+G  + +K++ V    K  G V Q 
Sbjct: 34  ALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQK 93

Query: 79  DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDAL----LKELGLL-----KCKNSVL 129
                 +++++++    R      +H ++  + +D +    LK+  L        K S L
Sbjct: 94  PNPF-PMSIYDNVAYGPR------IHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSAL 146

Query: 130 NVLSGGERKRVALAVQTIIVQSGFVPQHDLT-----VDTLTVHEHMTLMARLKMDRNL-- 182
             LSGG+++R+ +A +TI V+   +   + T     + TL + +   LM  LK +  +  
Sbjct: 147 K-LSGGQQQRLCIA-RTIAVKPDVILMDEPTSALDPISTLKIED---LMVELKKEYTIVI 201

Query: 183 --HHVERARTV 191
             H++++A  V
Sbjct: 202 VTHNMQQASRV 212

Length = 251

>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 15/133 (11%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACI---------SQRIQGDVDGQILLNGLEVE--KNLMVK 70
           E G +  +MG SG+GK+TLL  +         S  ++ D DG + +   +    + L   
Sbjct: 48  EEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVK-DGDGSVDVANCDAATLRRLRTH 106

Query: 71  VSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLN 130
               V Q    +   TV E++     ++    +   ER + VD  L+ +GL +  +    
Sbjct: 107 RVSMVFQQFALLPWRTVEENVAFGLEMQ---GMPKAERRKRVDEQLELVGLAQWADRKPG 163

Query: 131 VLSGGERKRVALA 143
            LSGG ++RV LA
Sbjct: 164 ELSGGMQQRVGLA 176

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382

>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional

 Score = 38.4 bits (89), Expect = 0.001
 Identities = 41/156 (26%), Positives = 76/156 (48%), Gaps = 18/156 (11%)

Query: 4   FHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV 63
            H  +G+    + +S  A +G +++I+G SG+GK+T L CI+  ++   +G I++NG  +
Sbjct: 11  LHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCIN-FLEKPSEGSIVVNGQTI 69

Query: 64  ----EKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNL-----------HHVER 108
               +K+  +KV+       L      V +H  L + + +  N+               R
Sbjct: 70  NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEAR 129

Query: 109 ARTVDALLKELGLLKCKNSVLNV-LSGGERKRVALA 143
            R V  L K +G+ +       V LSGG+++RV++A
Sbjct: 130 ERAVKYLAK-VGIDERAQGKYPVHLSGGQQQRVSIA 164

Length = 257

>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD

 Score = 38.3 bits (90), Expect = 0.001
 Identities = 38/145 (26%), Positives = 70/145 (48%), Gaps = 34/145 (23%)

Query: 16  SLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFV 75
            LS   + G L  I+GP+GAGKTT++  I+ + + D +G +L  G ++           +
Sbjct: 20  DLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD-EGSVLFGGTDLTG---------L 69

Query: 76  PQHDL------------TV-DTLTVHEHMTLMARLKMDRN--------LHHVERARTVDA 114
           P+H +            TV + LTV E++ L   L  D++        L   E+ R ++ 
Sbjct: 70  PEHQIARAGIGRKFQKPTVFENLTVFENLELA--LPRDKSVFASLFFRLSAEEKDR-IEE 126

Query: 115 LLKELGLLKCKNSVLNVLSGGERKR 139
           +L+ +GL    + +  +LS G+++ 
Sbjct: 127 VLETIGLADEADRLAGLLSHGQKQW 151

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 52/165 (31%), Positives = 74/165 (44%), Gaps = 44/165 (26%)

Query: 14  KESLSGIAES---GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVK 70
           KE L  I+ S   G+ + ++G +GAGK+TLL     RI   VD +   NG E      +K
Sbjct: 18  KEILKDISLSFFPGAKIGVLGLNGAGKSTLL-----RIMAGVDKEF--NG-EARPAPGIK 69

Query: 71  VSGFVPQHDLTVDTLTVHEH-MTLMARLK--MDR----NLHHVERARTVDALLKELG--- 120
           V G++PQ      T TV E+    +A +K  +DR    +    E    +DALL E     
Sbjct: 70  V-GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQ 128

Query: 121 --------------------LLKC--KNSVLNVLSGGERKRVALA 143
                                L+C   ++ +  LSGGER+RVAL 
Sbjct: 129 EIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALC 173

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 17/148 (11%)

Query: 16  SLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD-----VDGQILLNGLEVEKNLMVK 70
            LS   + G L  ++GP+GAGKTTL+  I+ + +        DG   L  L   +     
Sbjct: 23  DLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAG 82

Query: 71  VSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNL-------HHVERARTVDALLKELGLLK 123
           + G   Q     + LTV E+  L   L  D+++          E  R +D LL  +GL  
Sbjct: 83  I-GRKFQKPTVFENLTVREN--LELALNRDKSVFASLFARLRAEERRRIDELLATIGLGD 139

Query: 124 CKNSVLNVLSGGERKRVALAVQTIIVQS 151
            ++ +  +LS G+++   L +  ++ Q 
Sbjct: 140 ERDRLAALLSHGQKQW--LEIGMLLAQD 165

Length = 249

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 152 GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGL 200
           G+VPQ       LTV E++   ARL         ER   ++ LL+  GL
Sbjct: 81  GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEER---IEELLELFGL 126

Length = 293

>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK

 Score = 38.3 bits (89), Expect = 0.002
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 11/66 (16%)

Query: 24 GSLLAIMGPSGAGKTTLLACISQRI---QGDV-----DGQI--LLNGLEVEKNLMVKVS- 72
          G +L I+G SG+GK+TLL C++ R+    G        G    L    E E+  +++   
Sbjct: 29 GEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEW 88

Query: 73 GFVPQH 78
          GFV Q+
Sbjct: 89 GFVHQN 94

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253

>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 3/41 (7%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDV-DGQILLNGL 61
           + G +L I GP+G+GK+TLL+ I QR   DV +G I  + +
Sbjct: 339 KPGQMLGICGPTGSGKSTLLSLI-QR-HFDVSEGDIRFHDI 377

Length = 569

>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 4/60 (6%)

Query: 8   FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQ---RIQG-DVDGQILLNGLEV 63
           +GD +  + +S      S+ A++GPSG GK+T L C+++   RI+   +DG + L+G ++
Sbjct: 55  YGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDI 114

Length = 305

>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 37.0 bits (87), Expect = 0.002
 Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE 64
            G + A++G +GAGK+TL+  +S   + D  G+IL++G EV 
Sbjct: 24 RRGEVHALLGENGAGKSTLMKILSGLYKPD-SGEILVDGKEVS 65

This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163

>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed

 Score = 38.2 bits (90), Expect = 0.002
 Identities = 34/156 (21%), Positives = 57/156 (36%), Gaps = 61/156 (39%)

Query: 29  IMGPSGAGKTTLL---ACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTL 85
           ++G +GAGK+TLL   A + +  +G+        G++V         G++PQ        
Sbjct: 38  VLGLNGAGKSTLLRIMAGVDKEFEGEA---RPAPGIKV---------GYLPQEPQLDPEK 85

Query: 86  TVHEH--------------------------------MTLMARL--KMD-RNLHHVERA- 109
           TV E+                                      L   +D  +   ++   
Sbjct: 86  TVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQL 145

Query: 110 -RTVDALLKELGLLKC--KNSVLNVLSGGERKRVAL 142
              +DAL       +C   ++ +  LSGGER+RVAL
Sbjct: 146 EIAMDAL-------RCPPWDAKVTKLSGGERRRVAL 174

Length = 556

>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 52/180 (28%), Positives = 85/180 (47%), Gaps = 16/180 (8%)

Query: 15  ESLSGIA---ESGSLLAIMGPSGAGKTTL---LACISQRIQGD--VDGQIL--LNGLEVE 64
           E L GI+    +G ++AI+G SG+GK+TL   L C+ +   G   V GQ +  L+   + 
Sbjct: 22  EVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALA 81

Query: 65  KNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKC 124
           + L  +  GF+ Q    +  LT  +++ + A          + RA+    LL+ LGL   
Sbjct: 82  Q-LRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQ---ELLQRLGLEDR 137

Query: 125 KNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHH 184
                + LSGG+++RV++A    ++  G V   D     L  H    +MA L   R+  H
Sbjct: 138 VEYQPSQLSGGQQQRVSIA--RALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGH 195

Length = 648

>gnl|CDD|233821 TIGR02322, phosphon_PhnN, phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 15/30 (50%), Positives = 19/30 (63%)

Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVD 53
          G L+ ++GPSGAGK TLL     R+ GD  
Sbjct: 1  GRLIYVVGPSGAGKDTLLDYARARLAGDPR 30

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PMID:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP [Central intermediary metabolism, Phosphorus compounds]. Length = 179

>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 25/147 (17%)

Query: 8   FGDTNYK------ESLSGIAESGSLLAIMGPSGAGKTTLLACI--SQRIQGDVDGQILLN 59
           FG            +L+   + G ++A++G SGAGKTTLL  I  +Q+ +G+   +    
Sbjct: 387 FGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSG 446

Query: 60  GLEVEKNLMVKVSGFVP-QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKE 118
            +EV KN    VS  +P +++     +T+ EH   +     D N            +L  
Sbjct: 447 KVEVPKN---TVSALIPGEYEPEFGEVTILEH---LRSKTGDLNA--------AVEILNR 492

Query: 119 LGLLKC--KNSVLNVLSGGERKRVALA 143
            GL          + LS G+++R  LA
Sbjct: 493 AGLSDAVLYRRKFSELSTGQKERAKLA 519

Length = 593

>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 37.3 bits (86), Expect = 0.003
 Identities = 59/233 (25%), Positives = 102/233 (43%), Gaps = 38/233 (16%)

Query: 5   HPLFGDTNYKESLSGIA---ESGSLLAIMGPSGAGKTTLLACISQRIQGDVD-----GQI 56
           H  +G+    E+L GI+   E   L A++GPSG GK+T L C++ R+  D++     G+I
Sbjct: 11  HLSYGNY---EALHGISLDFEEKELTALIGPSGCGKSTFLRCLN-RMNDDIENIKITGEI 66

Query: 57  LLNGLEVEKNLMVKVS-----GFVPQHDLTVDTLTVHEHMTLMARLK--MDRNL--HHVE 107
              G  +  + M  V      G V Q   T    +V++++    ++    D+ L    VE
Sbjct: 67  KFEGQNIYGSKMDLVELRKEVGMVFQQP-TPFPFSVYDNVAYGLKIAGVKDKELIDQRVE 125

Query: 108 RARTVDALLKELGLLKCKNSVLNVLSGGERKRV----ALAVQTIIVQSGFVPQHDLTVDT 163
            +    A+ KE      +N+     SGG+++R+    ALAV+  +V    + +    +D 
Sbjct: 126 ESLKQAAIWKETKDNLDRNA--QAFSGGQQQRICIARALAVRPKVV---LLDEPTSALDP 180

Query: 164 LTVHEHMTLMARLKMD-------RNLHHVERARTVDALLKELGLLKCRPADEL 209
           ++  E    +  LK          NL    R     A L    L++  P +E+
Sbjct: 181 ISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233

Length = 251

>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 15/125 (12%)

Query: 28  AIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS---GFVPQHDLTVDT 84
           AI+G  G+GK+TLL  ++   +    G +LL+G ++ +     +    G+VPQ D+T+  
Sbjct: 34  AIIGRVGSGKSTLLKLLAGLYKPT-SGSVLLDGTDIRQLDPADLRRNIGYVPQ-DVTLFY 91

Query: 85  LTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV------LSGGERK 138
            T+ +++TL A L  D  +        V   + +          L +      LSGG+R+
Sbjct: 92  GTLRDNITLGAPLADDERILRAAELAGVTDFVNKHP----NGLDLQIGERGRGLSGGQRQ 147

Query: 139 RVALA 143
            VALA
Sbjct: 148 AVALA 152

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220

>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 25/142 (17%)

Query: 11  TNYKESLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL 67
              + +LS I      GSL+AI+G +G GKT+L++ +   +    D  +++ G       
Sbjct: 627 KAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRG------- 679

Query: 68  MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNS 127
              V+ +VPQ     +  TV +++   +    +R     ERA  V AL  +L LL   + 
Sbjct: 680 --TVA-YVPQVSWIFNA-TVRDNILFGSPFDPER----YERAIDVTALQHDLDLLPGGDL 731

Query: 128 V------LNVLSGGERKRVALA 143
                  +N+ SGG+++RV++A
Sbjct: 732 TEIGERGVNI-SGGQKQRVSMA 752

Length = 1622

>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional

 Score = 37.3 bits (87), Expect = 0.003
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 6/41 (14%)

Query: 28 AIMGPSGAGKTTLLACISQRIQGDVD-----GQILLNGLEV 63
          A +GPSG GK+TLL C + R+   VD     G+I L+G  +
Sbjct: 55 AFIGPSGCGKSTLLRCFN-RMNDLVDNCRIEGEIRLDGQNI 94

Length = 272

>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional

 Score = 37.6 bits (88), Expect = 0.003
 Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 26/138 (18%)

Query: 24  GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN----------LMV---- 69
           G +L I G  GAG+T L+ C+     G  +G+I ++G  V+             MV    
Sbjct: 288 GEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDR 347

Query: 70  KVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVL 129
           K  G VP        + V +++TL A L        ++ A  +  +L+ +  LK K +  
Sbjct: 348 KRDGIVPV-------MGVGKNITL-AALDRFTGGSRIDDAAELKTILESIQRLKVKTASP 399

Query: 130 NV----LSGGERKRVALA 143
            +    LSGG +++  LA
Sbjct: 400 ELAIARLSGGNQQKAVLA 417

Length = 506

>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 36.9 bits (85), Expect = 0.004
 Identities = 40/133 (30%), Positives = 69/133 (51%), Gaps = 15/133 (11%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQ--GDVDGQILLNGLEVEKNLMV---KVSGFVP 76
           E   + A++G SG GK+T L C ++       +DG + + G +V+   +V   K  G V 
Sbjct: 26  EQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVF 85

Query: 77  QHDLTVDTLTVHEHMTLMARLK-MDRNLHHVERARTVDALLKELGLL-----KCKNSVLN 130
           Q    V   +++E+++   +L  M +N    E A  VD  L+++GL      K K + L 
Sbjct: 86  QQP-NVFVKSIYENISYAPKLHGMIKNKDE-EEALVVDC-LQKVGLFEEVKDKLKQNAL- 141

Query: 131 VLSGGERKRVALA 143
            LSGG+++R+ +A
Sbjct: 142 ALSGGQQQRLCIA 154

Length = 246

>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional

 Score = 36.8 bits (85), Expect = 0.004
 Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 33/148 (22%)

Query: 6   PLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK 65
           P+FG  ++        ++G  L + G +GAGKTTLL  ++  +  +  GQI ++G     
Sbjct: 25  PVFGPLDFH------VDAGEALLVQGDNGAGKTTLLRVLAGLLHVE-SGQIQIDG----- 72

Query: 66  NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMD----RNLH-----HVERA-RTVDAL 115
                      +     D      ++  +  LK D     NLH     H  RA +   + 
Sbjct: 73  -----------KTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSA 121

Query: 116 LKELGLLKCKNSVLNVLSGGERKRVALA 143
           L  +GL   +++++  LS G++KR+ALA
Sbjct: 122 LAIVGLAGYEDTLVRQLSAGQKKRLALA 149

Length = 214

>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter

 Score = 37.4 bits (87), Expect = 0.004
 Identities = 34/126 (26%), Positives = 62/126 (49%), Gaps = 8/126 (6%)

Query: 24  GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGL---EVEKNLMVKVSGFVPQHDL 80
            S   I+G SG+GK+TL   +    Q    G+ILLNG    +++++ + +   ++PQ   
Sbjct: 500 NSKTTIVGMSGSGKSTLAKLLVGFFQAR-SGEILLNGFSLKDIDRHTLRQFINYLPQEPY 558

Query: 81  TVDTLTVHEHMTLMAR--LKMDRNLHHVERARTVDALLK-ELGLLKCKNSVLNVLSGGER 137
                ++ E++ L A+  +  D      E A   D +    LG     +   + +SGG++
Sbjct: 559 IFSG-SILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQK 617

Query: 138 KRVALA 143
           +R+ALA
Sbjct: 618 QRIALA 623

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	212
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	100.0
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	100.0
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	100.0
COG3638	258	ABC-type phosphate/phosphonate transport system, A	100.0
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	100.0
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	100.0
COG1127	263	Ttg2A ABC-type transport system involved in resist	100.0
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	100.0
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	100.0
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	100.0
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	100.0
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	100.0
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	100.0
COG2884	223	FtsE Predicted ATPase involved in cell division [C	100.0
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	100.0
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	100.0
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	100.0
PRK13537	306	nodulation ABC transporter NodI; Provisional	100.0
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	100.0
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	100.0
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	100.0
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	100.0
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	100.0
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	100.0
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	100.0
PRK13536	340	nodulation factor exporter subunit NodI; Provision	100.0
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	100.0
COG0411	250	LivG ABC-type branched-chain amino acid transport	100.0
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	100.0
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	100.0
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	100.0
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	100.0
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	100.0
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	100.0
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	100.0
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	100.0
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	100.0
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	100.0
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	100.0
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	100.0
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	100.0
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	100.0
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	100.0
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	100.0
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	100.0
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	100.0
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	100.0
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	100.0
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	100.0
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	100.0
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	100.0
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	100.0
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	100.0
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	100.0
cd03269	210	ABC_putative_ATPase This subfamily is involved in	100.0
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	100.0
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	100.0
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	100.0
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	100.0
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	100.0
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	100.0
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	100.0
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	100.0
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	100.0
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	100.0
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	100.0
COG4152	300	ABC-type uncharacterized transport system, ATPase	100.0
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	100.0
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
COG0410	237	LivF ABC-type branched-chain amino acid transport	100.0
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	100.0
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	100.0
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	100.0
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	100.0
COG4598	256	HisP ABC-type histidine transport system, ATPase c	100.0
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	100.0
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	100.0
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	100.0
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	100.0
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	100.0
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	100.0
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	100.0
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	100.0
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	100.0
PRK10908	222	cell division protein FtsE; Provisional	100.0
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	100.0
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	100.0
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	100.0
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	100.0
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	100.0
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	100.0
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	100.0
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	100.0
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	100.0
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	100.0
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	100.0
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	100.0
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	100.0
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	100.0
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	100.0
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	100.0
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	100.0
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	100.0
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	100.0
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	100.0
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	100.0
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	100.0
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	100.0
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	100.0
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	100.0
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	100.0
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	100.0
PRK09984	262	phosphonate/organophosphate ester transporter subu	100.0
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	100.0
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	100.0
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	100.0
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	100.0
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	100.0
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	100.0
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	100.0
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	100.0
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	100.0
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	100.0
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	100.0
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	100.0
cd03234	226	ABCG_White The White subfamily represents ABC tran	100.0
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	100.0
cd03299	235	ABC_ModC_like Archeal protein closely related to M	100.0
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	100.0
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	100.0
COG1123	539	ATPase components of various ABC-type transport sy	100.0
COG4525	259	TauB ABC-type taurine transport system, ATPase com	100.0
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	100.0
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	100.0
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	100.0
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	100.0
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG4559	259	ABC-type hemin transport system, ATPase component	100.0
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	100.0
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10261	623	glutathione transporter ATP-binding protein; Provi	100.0
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	100.0
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG4181	228	Predicted ABC-type transport system involved in ly	100.0
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	100.0
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	100.0
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	100.0
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	100.0
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	100.0
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10261	623	glutathione transporter ATP-binding protein; Provi	100.0
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	100.0
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	100.0
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	100.0
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	100.0
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	100.0
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	100.0
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	100.0
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	100.0
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	100.0
COG1123	539	ATPase components of various ABC-type transport sy	100.0
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	100.0
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	100.0
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	100.0
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	100.0
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	100.0
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	100.0
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	100.0
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	100.0
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	100.0
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	100.0
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	100.0
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	100.0
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	100.0
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	100.0
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	100.0
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	100.0
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	100.0
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	100.0
PLN03211	659	ABC transporter G-25; Provisional	100.0
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	100.0
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	100.0
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	100.0
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	100.0
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	100.0
PRK03695	248	vitamin B12-transporter ATPase; Provisional	100.0
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	100.0
COG3845	501	ABC-type uncharacterized transport systems, ATPase	100.0
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	100.0
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
KOG0058|consensus	716		100.0
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	100.0
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	100.0
PRK10938	490	putative molybdenum transport ATP-binding protein	100.0
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	100.0
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	100.0
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	100.0
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	100.0
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	100.0
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	100.0
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	100.0
COG4674	249	Uncharacterized ABC-type transport system, ATPase	100.0
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	100.0
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	100.0
COG4988	559	CydD ABC-type transport system involved in cytochr	100.0
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	100.0
COG4172	534	ABC-type uncharacterized transport system, duplica	100.0
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	100.0
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	100.0
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	100.0
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	100.0
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	100.0
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	100.0
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	100.0
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	100.0
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	100.0
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	100.0
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	100.0
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	100.0
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	100.0
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	100.0
COG4619	223	ABC-type uncharacterized transport system, ATPase	100.0
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	100.0
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	100.0
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	100.0
KOG0055|consensus	1228		100.0
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	100.0
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	100.0
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	100.0
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	100.0
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	100.0
PRK13546	264	teichoic acids export protein ATP-binding subunit;	100.0
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	100.0
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	100.0
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	100.0
cd03215	182	ABC_Carb_Monos_II This family represents domain II	100.0
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	100.0
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	100.0
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	100.0
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	100.0
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	100.0
cd03246	173	ABCC_Protease_Secretion This family represents the	100.0
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	100.0
PRK15064	530	ABC transporter ATP-binding protein; Provisional	100.0
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	100.0
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	100.0
PRK10535	648	macrolide transporter ATP-binding /permease protei	100.0
KOG0057|consensus	591		100.0
PRK10938	490	putative molybdenum transport ATP-binding protein	100.0
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	100.0
PRK15064	530	ABC transporter ATP-binding protein; Provisional	100.0
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	100.0
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	100.0
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	100.0
COG4172	534	ABC-type uncharacterized transport system, duplica	100.0
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	100.0
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	100.0
KOG0061|consensus	613		100.0
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	100.0
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	100.0
KOG0055|consensus	1228		100.0
PLN03232	1495	ABC transporter C family member; Provisional	100.0
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	100.0
cd03216	163	ABC_Carb_Monos_I This family represents the domain	100.0
PLN03130	1622	ABC transporter C family member; Provisional	100.0
COG4987	573	CydC ABC-type transport system involved in cytochr	100.0
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	100.0
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	100.0
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	100.0
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	100.0
PRK13409	590	putative ATPase RIL; Provisional	100.0
PTZ00243	1560	ABC transporter; Provisional	100.0
COG4586	325	ABC-type uncharacterized transport system, ATPase	100.0
COG4136	213	ABC-type uncharacterized transport system, ATPase	100.0
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	100.0
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	100.0
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	100.0
PRK10522	547	multidrug transporter membrane component/ATP-bindi	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	100.0
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	100.0
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	100.0
PRK11147	635	ABC transporter ATPase component; Reviewed	100.0
COG4133	209	CcmA ABC-type transport system involved in cytochr	100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
PRK11147	635	ABC transporter ATPase component; Reviewed	100.0
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	100.0
KOG0059|consensus	885		100.0
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	100.0
PLN03073	718	ABC transporter F family; Provisional	100.0
PF00005	137	ABC_tran: ABC transporter This structure is on hol	100.0
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	100.0
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	100.0
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	100.0
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	100.0
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	100.0
KOG0056|consensus	790		100.0
COG0488	530	Uup ATPase components of ABC transporters with dup	100.0
PRK13409	590	putative ATPase RIL; Provisional	100.0
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	100.0
PLN03232	1495	ABC transporter C family member; Provisional	100.0
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	100.0
PLN03130	1622	ABC transporter C family member; Provisional	100.0
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	100.0
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	100.0
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	100.0
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	100.0
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	100.0
PLN03073	718	ABC transporter F family; Provisional	100.0
PTZ00243	1560	ABC transporter; Provisional	100.0
KOG0065|consensus	1391		100.0
KOG0054|consensus	1381		100.0
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	100.0
COG0488	530	Uup ATPase components of ABC transporters with dup	100.0
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.97
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	99.97
KOG0054|consensus	1381		99.97
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.97
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.96
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.96
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.96
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.95
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.95
KOG0927|consensus	614		99.95
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.95
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.95
COG4178	604	ABC-type uncharacterized transport system, permeas	99.95
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.94
KOG0927|consensus	614		99.94
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.94
KOG0062|consensus	582		99.94
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.93
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.93
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.93
KOG0065|consensus	1391		99.92
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.92
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.92
KOG0066|consensus	807		99.9
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.89
KOG0060|consensus	659		99.89
KOG0062|consensus	582		99.88
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.88
KOG2355|consensus	291		99.87
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	99.86
KOG0064|consensus	728		99.86
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	99.83
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	99.83
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.82
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	99.81
cd03239	178	ABC_SMC_head The structural maintenance of chromos	99.8
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.79
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	99.79
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	99.78
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	99.78
KOG0066|consensus	807		99.77
KOG0063|consensus	592		99.76
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	99.76
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	99.75
cd03242	270	ABC_RecF RecF is a recombinational DNA repair ATPa	99.72
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.69
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.67
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	99.65
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	99.62
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.62
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	99.56
KOG0063|consensus	592		99.56
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	99.56
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	99.55
PRK00064	361	recF recombination protein F; Reviewed	99.52
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	99.5
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	99.48
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	99.42
PRK00409	782	recombination and DNA strand exchange inhibitor pr	99.31
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	99.31
PRK08533	230	flagellar accessory protein FlaH; Reviewed	99.23
PF13304	303	AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T	99.22
cd01128	249	rho_factor Transcription termination factor rho is	99.21
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	99.2
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	99.2
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	99.18
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	99.17
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	99.16
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	99.16
PRK13695	174	putative NTPase; Provisional	99.08
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	99.08
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	99.04
PRK06315	442	type III secretion system ATPase; Provisional	99.03
PHA02562	562	46 endonuclease subunit; Provisional	99.03
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.02
COG3910	233	Predicted ATPase [General function prediction only	99.0
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.99
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	98.99
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	98.97
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	98.97
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	98.96
PRK10246	1047	exonuclease subunit SbcC; Provisional	98.95
smart00382	148	AAA ATPases associated with a variety of cellular	98.95
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	98.94
PRK10869	553	recombination and repair protein; Provisional	98.94
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.9
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	98.88
PRK09825	176	idnK D-gluconate kinase; Provisional	98.87
PRK01156	895	chromosome segregation protein; Provisional	98.86
PRK03918	880	chromosome segregation protein; Provisional	98.86
PRK13830	818	conjugal transfer protein TrbE; Provisional	98.82
PRK01889	356	GTPase RsgA; Reviewed	98.8
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.76
PRK08149	428	ATP synthase SpaL; Validated	98.76
PF13555	62	AAA_29: P-loop containing region of AAA domain	98.72
PRK09862	506	putative ATP-dependent protease; Provisional	98.72
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	98.7
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	98.7
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.69
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.69
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	98.68
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	98.67
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.67
PRK07594	433	type III secretion system ATPase SsaN; Validated	98.66
cd01136	326	ATPase_flagellum-secretory_path_III Flagellum-spec	98.64
PRK06067	234	flagellar accessory protein FlaH; Validated	98.62
PRK10416	318	signal recognition particle-docking protein FtsY;	98.6
TIGR02546	422	III_secr_ATP type III secretion apparatus H+-trans	98.6
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	98.58
PRK09099	441	type III secretion system ATPase; Provisional	98.58
PLN02318	656	phosphoribulokinase/uridine kinase	98.56
PRK13891	852	conjugal transfer protein TrbE; Provisional	98.56
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.55
PRK07960	455	fliI flagellum-specific ATP synthase; Validated	98.55
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	98.54
PRK00300	205	gmk guanylate kinase; Provisional	98.54
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	98.53
PRK00098	298	GTPase RsgA; Reviewed	98.52
PRK05399	854	DNA mismatch repair protein MutS; Provisional	98.52
PF13558	90	SbcCD_C: Putative exonuclease SbcCD, C subunit; PD	98.52
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	98.51
TIGR03497	413	FliI_clade2 flagellar protein export ATPase FliI.	98.51
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	98.5
TIGR00611	365	recf recF protein. All proteins in this family for	98.5
TIGR03498	418	FliI_clade3 flagellar protein export ATPase FliI.	98.48
PRK03846	198	adenylylsulfate kinase; Provisional	98.47
TIGR03496	411	FliI_clade1 flagellar protein export ATPase FliI.	98.46
PRK02224	880	chromosome segregation protein; Provisional	98.46
PLN02796	347	D-glycerate 3-kinase	98.45
PRK13898	800	type IV secretion system ATPase VirB4; Provisional	98.44
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	98.42
PRK04863	1486	mukB cell division protein MukB; Provisional	98.42

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=5.7e-63  Score=391.16  Aligned_cols=207  Identities=27%  Similarity=0.371  Sum_probs=190.0

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc----ccccceEEEEc
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK----NLMVKVSGFVP   76 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~----~~~~~~i~~v~   76 (212)
                      +++++|+||+..+|++||++|.+||+++|+||||||||||||||+++..| ++|+|+++|.++..    ...|+.+|+||
T Consensus         5 i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~-~~G~I~i~g~~~~~~~~~~~~R~~vGmVF   83 (240)
T COG1126           5 IKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEP-DSGSITVDGEDVGDKKDILKLRRKVGMVF   83 (240)
T ss_pred             EEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCC-CCceEEECCEeccchhhHHHHHHhcCeec
Confidence            47899999999999999999999999999999999999999999999998 69999999987742    34678899999


Q ss_pred             CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250          77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ  156 (212)
Q Consensus        77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD  156 (212)
                      |+..+||++||.||+.++...-  .+.++++.++.+.++|+++||.+..+.+|.+|||||||||+|||||+.+|+++++|
T Consensus        84 Q~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFD  161 (240)
T COG1126          84 QQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFD  161 (240)
T ss_pred             ccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeec
Confidence            9999999999999999876432  35678899999999999999999999999999999999999999999999999999


Q ss_pred             CCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHHH---HHHHhcCeeecCCchhhh
Q psy8250         157 HDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTVD---ALLKELGLLKCRPADELN  210 (212)
Q Consensus       157 EPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~  210 (212)
                      |||| |||....++++.++++++++     +||++.+|+.+.   .+|++|+++.+|+|+++-
T Consensus       162 EPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f  224 (240)
T COG1126         162 EPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFF  224 (240)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHh
Confidence            9999 99999999999999999885     389999998863   378899999999999874

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.9e-57  Score=375.05  Aligned_cols=205  Identities=23%  Similarity=0.323  Sum_probs=188.5

Q ss_pred             CcccccccCC-----cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc------cccc
Q psy8250           1 METFHPLFGD-----TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK------NLMV   69 (212)
Q Consensus         1 ~~~l~~~~~~-----~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~------~~~~   69 (212)
                      +++++|.|..     ..+++||||+|++||++||||+||||||||+|+|+++..| ++|+|.++|+++..      +..|
T Consensus         4 l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~P-tsG~v~v~G~di~~l~~~~Lr~~R   82 (339)
T COG1135           4 LENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERP-TSGSVFVDGQDLTALSEAELRQLR   82 (339)
T ss_pred             EEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCC-CCceEEEcCEecccCChHHHHHHH
Confidence            4789999975     4699999999999999999999999999999999999999 69999999988854      2457


Q ss_pred             ceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhC
Q psy8250          70 KVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIV  149 (212)
Q Consensus        70 ~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~  149 (212)
                      +.||++||++.++...||++|++|+..+..   .++.+.++++.++|+.+||++..+++|.+|||||||||+|||||+.+
T Consensus        83 ~~IGMIFQhFnLLssrTV~~NvA~PLeiag---~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~  159 (339)
T COG1135          83 QKIGMIFQHFNLLSSRTVFENVAFPLELAG---VPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANN  159 (339)
T ss_pred             hhccEEeccccccccchHHhhhhhhHhhcC---CCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcC
Confidence            889999999999999999999999988764   56888999999999999999999999999999999999999999999


Q ss_pred             CCeEEecCCCC-CChhhHHHHHHHHHHHHhhcC------cchHHHHHHHH---HHHHhcCeeecCCchhh
Q psy8250         150 QSGFVPQHDLT-VDTLTVHEHMTLMARLKMDRN------LHHVERARTVD---ALLKELGLLKCRPADEL  209 (212)
Q Consensus       150 p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~~------~h~~~~~~~~~---~~l~~g~~~~~~~~~~~  209 (212)
                      |++|++||||| |||.+.+.|+++|++++++.+      ||.++.++..+   .+|++|+++..|+..++
T Consensus       160 P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~v  229 (339)
T COG1135         160 PKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV  229 (339)
T ss_pred             CCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHh
Confidence            99999999999 999999999999999998853      79999987753   58999999999998776

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=7.9e-57  Score=363.54  Aligned_cols=207  Identities=24%  Similarity=0.366  Sum_probs=190.2

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEcC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQ   77 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~Q   77 (212)
                      ++++||.|+++.+++|+||+|++||+++++|||||||||+||+|++++.| ++|+|+++|+++..   ..+|+.||||-|
T Consensus         4 ~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiep-t~G~I~i~g~~i~~~d~~~LRr~IGYviQ   82 (309)
T COG1125           4 FENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEP-TSGEILIDGEDISDLDPVELRRKIGYVIQ   82 (309)
T ss_pred             eeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCC-CCceEEECCeecccCCHHHHHHhhhhhhh
Confidence            47899999999999999999999999999999999999999999999999 69999999999865   357889999999


Q ss_pred             CCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc--ccCCCCCCCChHHHHHHHHHHHHhhCCCeEEe
Q psy8250          78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK--CKNSVLNVLSGGERKRVALAVQTIIVQSGFVP  155 (212)
Q Consensus        78 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~--~~~~~~~~LSgGqrqRv~lA~al~~~p~llil  155 (212)
                      +..+||++||.||+.+...+.   +++++..+++++++|+.+||++  +.+++|++|||||+|||.+||||+.+|++|++
T Consensus        83 qigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLM  159 (309)
T COG1125          83 QIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLM  159 (309)
T ss_pred             hcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEee
Confidence            999999999999999977764   3567788899999999999974  89999999999999999999999999999999


Q ss_pred             cCCCC-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250         156 QHDLT-VDTLTVHEHMTLMARLKMDR------NLHHVERARTV-D--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       156 DEPt~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      ||||+ |||.++.++.+.+.+++++.      +|||+++|... +  .+|++|+++..++|+++..
T Consensus       160 DEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~  225 (309)
T COG1125         160 DEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILA  225 (309)
T ss_pred             cCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHh
Confidence            99999 99999999999999998763      48999999764 3  4899999999999998753

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.1e-56  Score=359.32  Aligned_cols=210  Identities=25%  Similarity=0.354  Sum_probs=186.5

Q ss_pred             Cccccccc-CCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc------ccccceEE
Q psy8250           1 METFHPLF-GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK------NLMVKVSG   73 (212)
Q Consensus         1 ~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~------~~~~~~i~   73 (212)
                      ++++++.| +++++|+||||+|++||+++||||||||||||||+|+|+..| ++|+|.++|.++..      +.+++.+|
T Consensus         6 ~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~-t~G~i~~~g~~i~~~~~k~lr~~r~~iG   84 (258)
T COG3638           6 VKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDP-TSGEILFNGVQITKLKGKELRKLRRDIG   84 (258)
T ss_pred             EeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCC-CcceEEecccchhccchHHHHHHHHhce
Confidence            47899999 899999999999999999999999999999999999999998 69999999988854      24577899


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHhhhc-----ccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhh
Q psy8250          74 FVPQHDLTVDTLTVHEHMTLMARLKM-----DRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTII  148 (212)
Q Consensus        74 ~v~Q~~~~~~~ltv~e~l~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~  148 (212)
                      |+||++.+.+.++|++|+..+..-+.     ..++..++.+..+.++|+++|+.+.+.++.++|||||+|||+|||||++
T Consensus        85 mIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q  164 (258)
T COG3638          85 MIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQ  164 (258)
T ss_pred             eEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhc
Confidence            99999999999999999988654221     1233445677788999999999999999999999999999999999999


Q ss_pred             CCCeEEecCCCC-CChhhHHHHHHHHHHHHhhcC------cchHHHHHHH-HH--HHHhcCeeecCCchhhhc
Q psy8250         149 VQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDRN------LHHVERARTV-DA--LLKELGLLKCRPADELNR  211 (212)
Q Consensus       149 ~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~~------~h~~~~~~~~-~~--~l~~g~~~~~~~~~~~~~  211 (212)
                      +|++|+.|||++ |||.+.+++++.|++++++.+      .|+++.|.++ ++  -|++|+++++|+++|+.+
T Consensus       165 ~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el~~  237 (258)
T COG3638         165 QPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELTD  237 (258)
T ss_pred             CCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhhhhH
Confidence            999999999999 999999999999999988752      6999999875 44  478999999999988765

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=100.00  E-value=5.2e-57  Score=370.79  Aligned_cols=209  Identities=26%  Similarity=0.355  Sum_probs=185.8

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEcC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQ   77 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~Q   77 (212)
                      ++++++.|+++.+++|+||++++|++++|+||||||||||||+|+|++.| .+|+|+++|+++..   ..+.+.++||||
T Consensus         5 ~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p-~~G~V~l~g~~i~~~~~kelAk~ia~vpQ   83 (258)
T COG1120           5 VENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKP-KSGEVLLDGKDIASLSPKELAKKLAYVPQ   83 (258)
T ss_pred             EEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCC-CCCEEEECCCchhhcCHHHHhhhEEEecc
Confidence            36899999999999999999999999999999999999999999999999 69999999999854   456788999999


Q ss_pred             CCCCCCCCCHHHHHHHHHhhhcc-cCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250          78 HDLTVDTLTVHEHMTLMARLKMD-RNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ  156 (212)
Q Consensus        78 ~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD  156 (212)
                      .+...+.+||+|.+.++..-+.. .....+++.+.+.++|+.+|+.++.++++.+|||||||||.|||||+++|++|+||
T Consensus        84 ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLD  163 (258)
T COG1120          84 SPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLD  163 (258)
T ss_pred             CCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeC
Confidence            99888999999999987543221 11224455668999999999999999999999999999999999999999999999


Q ss_pred             CCCC-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHHH---HHHHhcCeeecCCchhhh
Q psy8250         157 HDLT-VDTLTVHEHMTLMARLKMDR------NLHHVERARTVD---ALLKELGLLKCRPADELN  210 (212)
Q Consensus       157 EPt~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~  210 (212)
                      |||+ ||...+.++++++++++++.      ++||++.|..++   .+|++|++++.|+|+++-
T Consensus       164 EPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl  227 (258)
T COG1120         164 EPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL  227 (258)
T ss_pred             CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence            9999 99999999999999999663      369999998764   389999999999998763

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=1.5e-56  Score=382.66  Aligned_cols=209  Identities=24%  Similarity=0.334  Sum_probs=191.2

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHD   79 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~   79 (212)
                      +++++|.||+..+++|+||+|++||+++|+||||||||||||+|+|+..| ++|+|.++|++++.. ..+|.+|+|||+.
T Consensus         8 i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p-~~G~I~l~G~~i~~lpp~kR~ig~VFQ~Y   86 (352)
T COG3842           8 IRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQP-SSGEILLDGEDITDVPPEKRPIGMVFQSY   86 (352)
T ss_pred             EEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEECCCCChhhcccceeecCc
Confidence            47899999999999999999999999999999999999999999999999 699999999999764 3567899999999


Q ss_pred             CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCC
Q psy8250          80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDL  159 (212)
Q Consensus        80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt  159 (212)
                      .+||+|||+||+.|+....  +....++..+++.++++.+++.++.++++.+|||||||||+|||||+.+|++|+||||.
T Consensus        87 ALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPl  164 (352)
T COG3842          87 ALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPL  164 (352)
T ss_pred             ccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcc
Confidence            9999999999999998743  22345667889999999999999999999999999999999999999999999999999


Q ss_pred             C-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHH---HHHHHhcCeeecCCchhhhcC
Q psy8250         160 T-VDTLTVHEHMTLMARLKMDR------NLHHVERARTV---DALLKELGLLKCRPADELNRQ  212 (212)
Q Consensus       160 ~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~---~~~l~~g~~~~~~~~~~~~~~  212 (212)
                      | ||..-+.++...+++++++.      +|||-++|...   ..+|++|++...|+|+|++++
T Consensus       165 SaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~  227 (352)
T COG3842         165 SALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER  227 (352)
T ss_pred             cchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC
Confidence            9 99999999999999988764      48999998764   358999999999999999874

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=2.6e-56  Score=358.07  Aligned_cols=208  Identities=26%  Similarity=0.302  Sum_probs=190.6

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc------ccccceEEE
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK------NLMVKVSGF   74 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~------~~~~~~i~~   74 (212)
                      +++++++||++.+++||||+|++||+++|+||||||||||||+|.|++.| ++|+|+++|.++..      ..+++++|+
T Consensus        11 vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P-~~GeI~i~G~~i~~ls~~~~~~ir~r~Gv   89 (263)
T COG1127          11 VRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP-DKGEILIDGEDIPQLSEEELYEIRKRMGV   89 (263)
T ss_pred             EeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCC-CCCeEEEcCcchhccCHHHHHHHHhheeE
Confidence            47899999999999999999999999999999999999999999999999 69999999999853      245778999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccc-cCCCCCCCChHHHHHHHHHHHHhhCCCeE
Q psy8250          75 VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKC-KNSVLNVLSGGERKRVALAVQTIIVQSGF  153 (212)
Q Consensus        75 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~~LSgGqrqRv~lA~al~~~p~ll  153 (212)
                      +||...+|..+||+||+.|+.+-+  ..+++...++.+..-|+.+||... .+.+|++|||||++|++||||++.+|+++
T Consensus        90 lFQ~gALFssltV~eNVafplre~--~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell  167 (263)
T COG1127          90 LFQQGALFSSLTVFENVAFPLREH--TKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELL  167 (263)
T ss_pred             EeeccccccccchhHhhheehHhh--ccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEE
Confidence            999999999999999999987654  356788888889999999999877 99999999999999999999999999999


Q ss_pred             EecCCCC-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250         154 VPQHDLT-VDTLTVHEHMTLMARLKMDR------NLHHVERARTV-D--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       154 ilDEPt~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      ++||||+ |||.+...+-++|+++++..      +|||++.+..+ +  .++.+|+++++|+++++.+
T Consensus       168 ~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~  235 (263)
T COG1127         168 FLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLA  235 (263)
T ss_pred             EecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence            9999999 99999999999999999874      48999988765 3  4899999999999999875

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=100.00  E-value=7.4e-56  Score=376.48  Aligned_cols=207  Identities=25%  Similarity=0.298  Sum_probs=191.0

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHD   79 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~   79 (212)
                      +++++|.||+..+++++|++|++||+++|+||||||||||||+|+|+..| ++|+|+++|++++.. ...|.+++|||+.
T Consensus         6 l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~-~~G~I~i~g~~vt~l~P~~R~iamVFQ~y   84 (338)
T COG3839           6 LKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEP-TSGEILIDGRDVTDLPPEKRGIAMVFQNY   84 (338)
T ss_pred             EeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEECCCCChhHCCEEEEeCCc
Confidence            47899999987699999999999999999999999999999999999999 699999999999873 4567899999999


Q ss_pred             CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCC
Q psy8250          80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDL  159 (212)
Q Consensus        80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt  159 (212)
                      .+||+|||+||+.|+.+.+   +.++++..+++.++.+.++++++++++|.+|||||||||+|||||+++|++++||||+
T Consensus        85 ALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPl  161 (338)
T COG3839          85 ALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPL  161 (338)
T ss_pred             cccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCch
Confidence            9999999999999998865   3467788999999999999999999999999999999999999999999999999999


Q ss_pred             C-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHHH---HHHHhcCeeecCCchhhhc
Q psy8250         160 T-VDTLTVHEHMTLMARLKMDR------NLHHVERARTVD---ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       160 ~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~~  211 (212)
                      | ||...+..+...|++++++.      +|||-.+|....   .+|++|++...|+|.|+++
T Consensus       162 SnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~  223 (338)
T COG3839         162 SNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYE  223 (338)
T ss_pred             hHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhh
Confidence            9 99999999999999998764      389998887742   4788999999999999985

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.1e-55  Score=355.12  Aligned_cols=185  Identities=30%  Similarity=0.364  Sum_probs=168.5

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL   80 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~   80 (212)
                      ++++++.|++..+|+||||+|.+||+++|+||||||||||||+|+|+..| ++|+|.++|.++.  .....++||||++.
T Consensus         6 i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p-~~G~V~~~g~~v~--~p~~~~~~vFQ~~~   82 (248)
T COG1116           6 IEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKP-TSGEVLLDGRPVT--GPGPDIGYVFQEDA   82 (248)
T ss_pred             EEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCcccC--CCCCCEEEEeccCc
Confidence            46899999999999999999999999999999999999999999999999 6999999999983  34556899999999


Q ss_pred             CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC
Q psy8250          81 TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT  160 (212)
Q Consensus        81 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~  160 (212)
                      ++|.+||++|+.++.....   .++.+..+++.++|+.+||....+++|.+|||||||||+|||||+.+|++|+|||||+
T Consensus        83 LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFg  159 (248)
T COG1116          83 LLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFG  159 (248)
T ss_pred             ccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence            9999999999999887642   3456677789999999999999999999999999999999999999999999999999


Q ss_pred             -CChhhHHHHHHHHHHHHhhc------CcchHHHHHHH
Q psy8250         161 -VDTLTVHEHMTLMARLKMDR------NLHHVERARTV  191 (212)
Q Consensus       161 -lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~  191 (212)
                       ||..++..+.+.+.++.++.      +|||+++|...
T Consensus       160 ALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~L  197 (248)
T COG1116         160 ALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYL  197 (248)
T ss_pred             hhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhh
Confidence             99999999999988876553      48999998664

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.9e-55  Score=362.57  Aligned_cols=210  Identities=27%  Similarity=0.344  Sum_probs=190.6

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCE---eCCc-ccccceEEEEc
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGL---EVEK-NLMVKVSGFVP   76 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~---~~~~-~~~~~~i~~v~   76 (212)
                      ++++++.|+...+++|||++|+.||.+|++||||||||||||+|+|+..| ++|.|.++|+   +.+. ....++|||||
T Consensus         5 i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p-~~G~I~~~~~~l~D~~~~~~~~R~VGfvF   83 (345)
T COG1118           5 INNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETP-DAGRIRLNGRVLFDVSNLAVRDRKVGFVF   83 (345)
T ss_pred             ehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCC-CCceEEECCEeccchhccchhhcceeEEE
Confidence            46789999999999999999999999999999999999999999999999 6999999999   5544 23457899999


Q ss_pred             CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250          77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ  156 (212)
Q Consensus        77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD  156 (212)
                      |+..+|+.|||.+|++|+...+. ...+..+.+.++.++|+.+.|+...+++|.+|||||||||+|||||+..|++|+||
T Consensus        84 Q~YALF~HmtVa~NIAFGl~~~~-~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLD  162 (345)
T COG1118          84 QHYALFPHMTVADNIAFGLKVRK-ERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLD  162 (345)
T ss_pred             echhhcccchHHhhhhhcccccc-cCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeec
Confidence            99999999999999999987652 23456778889999999999999999999999999999999999999999999999


Q ss_pred             CCCC-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHHH---HHHHhcCeeecCCchhhhcC
Q psy8250         157 HDLT-VDTLTVHEHMTLMARLKMDR------NLHHVERARTVD---ALLKELGLLKCRPADELNRQ  212 (212)
Q Consensus       157 EPt~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~~~  212 (212)
                      ||++ ||...++++...|++++++.      +|||.+++.+..   .+|++|+|...|+++|++++
T Consensus       163 EPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~  228 (345)
T COG1118         163 EPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDH  228 (345)
T ss_pred             CCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcC
Confidence            9999 99999999999999998762      389999997753   48999999999999999864

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=8.8e-55  Score=356.14  Aligned_cols=210  Identities=25%  Similarity=0.325  Sum_probs=178.9

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCC-
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHD-   79 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~-   79 (212)
                      ++|+++.|++..+|+||||++++|++++|+||||||||||+|+|+|+++| .+|+|.++|+++.....+..||||||.. 
T Consensus         7 v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p-~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~   85 (254)
T COG1121           7 VENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP-SSGEIKIFGKPVRKRRKRLRIGYVPQKSS   85 (254)
T ss_pred             EeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC-CcceEEEccccccccccCCeEEEcCcccc
Confidence            47899999966899999999999999999999999999999999999999 6999999999886554457899999964 


Q ss_pred             -CCCCCCCHHHHHHHHHhhhcc-cCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecC
Q psy8250          80 -LTVDTLTVHEHMTLMARLKMD-RNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQH  157 (212)
Q Consensus        80 -~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDE  157 (212)
                       ..-+..||+|.+.++...+.. .....+.+++.++++|+++|+.++.++++++|||||+|||.|||||+++|++|+|||
T Consensus        86 ~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDE  165 (254)
T COG1121          86 VDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDE  165 (254)
T ss_pred             cCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecC
Confidence             333456999999986432211 111234457889999999999999999999999999999999999999999999999


Q ss_pred             CCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-HHH-HHhcCeeecCCchhhhc
Q psy8250         158 DLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-DAL-LKELGLLKCRPADELNR  211 (212)
Q Consensus       158 Pt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~~~-l~~g~~~~~~~~~~~~~  211 (212)
                      ||+ +|+.++..++++|+++++++     ++||++.+... +.+ +=+.++.+.|+++++.+
T Consensus       166 P~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~~~~~G~~~~~~~  227 (254)
T COG1121         166 PFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIASGPPEEVLT  227 (254)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCeeEeccChhhccC
Confidence            999 99999999999999999874     37999988775 443 22778999999998754

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=4.8e-54  Score=363.73  Aligned_cols=206  Identities=27%  Similarity=0.419  Sum_probs=186.9

Q ss_pred             cccccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc--ccccceEEEEcCC
Q psy8250           2 ETFHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK--NLMVKVSGFVPQH   78 (212)
Q Consensus         2 ~~l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~--~~~~~~i~~v~Q~   78 (212)
                      ++++|.|+ ++.+|+||||+|++|+++||+||||||||||+|+|+|++.| ++|+|.++|.++..  ...++.+||+||+
T Consensus         8 ~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p-~~G~i~i~G~~~~~~~~~~~~~igy~~~~   86 (293)
T COG1131           8 RNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP-TSGEILVLGYDVVKEPAKVRRRIGYVPQE   86 (293)
T ss_pred             cceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC-CceEEEEcCEeCccCHHHHHhheEEEccC
Confidence            68999999 69999999999999999999999999999999999999999 69999999998865  3567789999999


Q ss_pred             CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250          79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD  158 (212)
Q Consensus        79 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP  158 (212)
                      +.+++.+|++||+.|.+.++...   .....++++++++.+||.+..++++.+||+|||||++||+||+.+|+++|||||
T Consensus        87 ~~~~~~lT~~e~l~~~~~l~~~~---~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEP  163 (293)
T COG1131          87 PSLYPELTVRENLEFFARLYGLS---KEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEP  163 (293)
T ss_pred             CCCCccccHHHHHHHHHHHhCCC---hhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence            99999999999999999887532   234567899999999999877889999999999999999999999999999999


Q ss_pred             CC-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250         159 LT-VDTLTVHEHMTLMARLKMDR------NLHHVERARTV-D--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       159 t~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      |+ |||.++.+++++|++++.++      .||.++++... +  .+|++|+++++|++++++.
T Consensus       164 t~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~  226 (293)
T COG1131         164 TSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE  226 (293)
T ss_pred             CcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence            99 99999999999999999875      27999999874 3  4899999999999888753

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.5e-54  Score=340.31  Aligned_cols=206  Identities=22%  Similarity=0.328  Sum_probs=182.6

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCC----CceEEEECCEeCCc-----ccccce
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD----VDGQILLNGLEVEK-----NLMVKV   71 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~----~~G~I~~~g~~~~~-----~~~~~~   71 (212)
                      +++|+++||++.+|++||++|++++++|||||||||||||||+++.+....    .+|+|.++|+++..     ..+|+.
T Consensus        10 ~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~   89 (253)
T COG1117          10 VRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRR   89 (253)
T ss_pred             ecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHH
Confidence            368999999999999999999999999999999999999999999877541    36999999999854     247889


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc----ccCCCCCCCChHHHHHHHHHHHHh
Q psy8250          72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK----CKNSVLNVLSGGERKRVALAVQTI  147 (212)
Q Consensus        72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----~~~~~~~~LSgGqrqRv~lA~al~  147 (212)
                      +|+|||.|..|| +|++||+.++.+++...   .++..+.+++.|+...|++    .+++.+..|||||+||++|||||+
T Consensus        90 vGMVFQkPnPFp-~SIydNVayG~r~~g~~---~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalA  165 (253)
T COG1117          90 VGMVFQKPNPFP-MSIYDNVAYGLRLHGIK---DKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALA  165 (253)
T ss_pred             heeeccCCCCCC-chHHHHHHHhHHhhccc---hHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHh
Confidence            999999999998 89999999999987543   2567788999999998864    567888899999999999999999


Q ss_pred             hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH---HHHHHhcCeeecCCchhhh
Q psy8250         148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV---DALLKELGLLKCRPADELN  210 (212)
Q Consensus       148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~---~~~l~~g~~~~~~~~~~~~  210 (212)
                      .+|++|||||||| |||.+..+|.++|.+|+++.    +||++..|+.+   ..++..|++++.|+++++-
T Consensus       166 v~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF  236 (253)
T COG1117         166 VKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIF  236 (253)
T ss_pred             cCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence            9999999999999 99999999999999999764    48999888664   4689999999999998863

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=100.00  E-value=4.9e-54  Score=333.89  Aligned_cols=201  Identities=25%  Similarity=0.303  Sum_probs=182.1

Q ss_pred             CcccccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc------ccccceEE
Q psy8250           1 METFHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK------NLMVKVSG   73 (212)
Q Consensus         1 ~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~------~~~~~~i~   73 (212)
                      +++++|.|+ ++.+|+||||+|++||++-|+||||||||||||+|.+...| ++|+|+++|.++..      ..++++||
T Consensus         4 f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~p-t~G~i~~~~~dl~~l~~~~iP~LRR~IG   82 (223)
T COG2884           4 FENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERP-TRGKILVNGHDLSRLKGREIPFLRRQIG   82 (223)
T ss_pred             ehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcC-CCceEEECCeecccccccccchhhheee
Confidence            478999995 45599999999999999999999999999999999999999 69999999999864      23688999


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeE
Q psy8250          74 FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGF  153 (212)
Q Consensus        74 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~ll  153 (212)
                      +|||+..+.+..||+||++|+....   +.+..+.++++.++|+.+||.+..+..|.+|||||||||+||||++.+|++|
T Consensus        83 vVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vL  159 (223)
T COG2884          83 VVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVL  159 (223)
T ss_pred             eEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeE
Confidence            9999999999999999999988765   3467788899999999999999999999999999999999999999999999


Q ss_pred             EecCCCC-CChhhHHHHHHHHHHHHhhcC-----cchHHHHHHHH---HHHHhcCeeecCC
Q psy8250         154 VPQHDLT-VDTLTVHEHMTLMARLKMDRN-----LHHVERARTVD---ALLKELGLLKCRP  205 (212)
Q Consensus       154 ilDEPt~-lD~~~~~~~~~~l~~l~~~~~-----~h~~~~~~~~~---~~l~~g~~~~~~~  205 (212)
                      |.||||. |||....++++++.+++..++     |||.+.+.+..   ..+.+|+++.+..
T Consensus       160 lADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~  220 (223)
T COG2884         160 LADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES  220 (223)
T ss_pred             eecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence            9999999 999999999999999998754     79999887653   4678999887664

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=8.8e-54  Score=345.52  Aligned_cols=196  Identities=30%  Similarity=0.366  Sum_probs=170.6

Q ss_pred             CcccccccCC----cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-------ccc
Q psy8250           1 METFHPLFGD----TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-------LMV   69 (212)
Q Consensus         1 ~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-------~~~   69 (212)
                      +++++|.|+.    ..+|++|||+|++||+++|+|||||||||||++|.|+..| ++|.|+++|.+++..       .++
T Consensus         4 ~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p-t~G~v~i~g~d~~~l~~~~~~~~R~   82 (226)
T COG1136           4 LKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP-TSGEVLINGKDLTKLSEKELAKLRR   82 (226)
T ss_pred             EeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC-CCceEEECCEEcCcCCHHHHHHHHH
Confidence            4688898854    3699999999999999999999999999999999999999 799999999988642       245


Q ss_pred             ceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccC-CCCCCCChHHHHHHHHHHHHhh
Q psy8250          70 KVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKN-SVLNVLSGGERKRVALAVQTII  148 (212)
Q Consensus        70 ~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgGqrqRv~lA~al~~  148 (212)
                      +.+|||||+..+.|.+||.||+.++..+..   .+.......+.++++.+|+.+..+ ++|.+|||||||||+|||||+.
T Consensus        83 ~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~---~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~  159 (226)
T COG1136          83 KKIGFVFQNFNLLPDLTVLENVELPLLIAG---KSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALIN  159 (226)
T ss_pred             HhEEEECccCCCCCCCCHHHHHHhHHHHcC---CChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhc
Confidence            679999999999999999999999776543   222255677889999999987666 8899999999999999999999


Q ss_pred             CCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHHHH--HHHhcCe
Q psy8250         149 VQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR------NLHHVERARTVDA--LLKELGL  200 (212)
Q Consensus       149 ~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~~~--~l~~g~~  200 (212)
                      +|++|++||||. ||..+.+.+++++.+++++.      +|||.+.+..+++  .+++|++
T Consensus       160 ~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~  220 (226)
T COG1136         160 NPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKI  220 (226)
T ss_pred             CCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCee
Confidence            999999999999 99999999999999998763      3899998877664  5668873

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.2e-53  Score=333.11  Aligned_cols=207  Identities=22%  Similarity=0.316  Sum_probs=189.1

Q ss_pred             CcccccccCCcc-eeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc--ccccceEEEEcC
Q psy8250           1 METFHPLFGDTN-YKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK--NLMVKVSGFVPQ   77 (212)
Q Consensus         1 ~~~l~~~~~~~~-~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~--~~~~~~i~~v~Q   77 (212)
                      +++++|+|+... +++||||+++.|+++||+|||||||||+||+|++++.| ++|.|+++|.+...  ...+++||.++.
T Consensus         4 v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P-~~G~v~idg~d~~~~p~~vrr~IGVl~~   82 (245)
T COG4555           4 VTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIP-DSGKVTIDGVDTVRDPSFVRRKIGVLFG   82 (245)
T ss_pred             eeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccC-CCceEEEeecccccChHHHhhhcceecC
Confidence            368999999876 99999999999999999999999999999999999999 69999999998743  356888999998


Q ss_pred             CCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecC
Q psy8250          78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQH  157 (212)
Q Consensus        78 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDE  157 (212)
                      +..+|..||++||+.|+++++   +++..+.++++.++.+.++|.+++++++.++|.||||||+|||||+++|++++|||
T Consensus        83 e~glY~RlT~rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDE  159 (245)
T COG4555          83 ERGLYARLTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDE  159 (245)
T ss_pred             CcChhhhhhHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcC
Confidence            889999999999999999886   35667788899999999999999999999999999999999999999999999999


Q ss_pred             CCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250         158 DLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       158 Pt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      ||| ||..+.+.+.+.+.+++.++     .+|.+++++.. +  .++++|.+++.|+++.+.+
T Consensus       160 P~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~  222 (245)
T COG4555         160 PTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDA  222 (245)
T ss_pred             CCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence            999 99999999999999998764     37999998764 3  4899999999999988753

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.5e-52  Score=363.09  Aligned_cols=207  Identities=21%  Similarity=0.256  Sum_probs=184.3

Q ss_pred             Cccccccc-CCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCC
Q psy8250           1 METFHPLF-GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQH   78 (212)
Q Consensus         1 ~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~   78 (212)
                      ++++++.| +++.+|+|+||++++|++++|+|||||||||||++|+|+.+| ++|+|+++|.++... ..++.+|||||+
T Consensus         6 i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p-~~G~I~~~g~~i~~~~~~~r~ig~v~Q~   84 (356)
T PRK11650          6 LQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERI-TSGEIWIGGRVVNELEPADRDIAMVFQN   84 (356)
T ss_pred             EEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC-CceEEEECCEECCCCCHHHCCEEEEeCC
Confidence            46899999 778899999999999999999999999999999999999999 699999999998542 234679999999


Q ss_pred             CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250          79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD  158 (212)
Q Consensus        79 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP  158 (212)
                      +.+|+++||+||+.|+...+   ..+..+...++.++++.+|+.+..++++.+|||||||||+|||||+.+|++||||||
T Consensus        85 ~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP  161 (356)
T PRK11650         85 YALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEP  161 (356)
T ss_pred             ccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            99999999999999976543   234455667889999999999999999999999999999999999999999999999


Q ss_pred             CC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250         159 LT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       159 t~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      |+ ||+..+..+.+.|++++++ +     +|||.+++... +  .+|++|+++..|+++++.+
T Consensus       162 ~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~  224 (356)
T PRK11650        162 LSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYE  224 (356)
T ss_pred             cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHh
Confidence            99 9999999999999999775 2     37999988764 2  4789999999999999865

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=100.00  E-value=2e-52  Score=356.18  Aligned_cols=206  Identities=25%  Similarity=0.280  Sum_probs=183.1

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc--cccceEEEEcCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN--LMVKVSGFVPQH   78 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~--~~~~~i~~v~Q~   78 (212)
                      +++++|.|++..+|+||||+|++|+++||+||||||||||+++|+|++.| ++|+|+++|.++...  ..++.+||+||+
T Consensus        10 i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p-~~G~v~i~G~~~~~~~~~~~~~ig~v~q~   88 (306)
T PRK13537         10 FRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHP-DAGSISLCGEPVPSRARHARQRVGVVPQF   88 (306)
T ss_pred             EEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEecccchHHHHhcEEEEecc
Confidence            47899999988999999999999999999999999999999999999999 699999999998542  346779999999


Q ss_pred             CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250          79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD  158 (212)
Q Consensus        79 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP  158 (212)
                      +.+++.+|++||+.+....+.   .+..+...++.++++.+++.+..++++.+||+|||||++||+||+.+|++||||||
T Consensus        89 ~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEP  165 (306)
T PRK13537         89 DNLDPDFTVRENLLVFGRYFG---LSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEP  165 (306)
T ss_pred             CcCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence            999999999999998665432   23444556788999999999999999999999999999999999999999999999


Q ss_pred             CC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         159 LT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       159 t~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      |+ ||+.++..++++|+++++++     .+|+++++... +  .+|++|++++.|+++++.
T Consensus       166 t~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~  226 (306)
T PRK13537        166 TTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALI  226 (306)
T ss_pred             CcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            99 99999999999999997653     27999998764 3  578999999999999875

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.1e-52  Score=336.43  Aligned_cols=204  Identities=23%  Similarity=0.304  Sum_probs=179.3

Q ss_pred             CcccccccCCcc----eeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc----cccceE
Q psy8250           1 METFHPLFGDTN----YKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN----LMVKVS   72 (212)
Q Consensus         1 ~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~----~~~~~i   72 (212)
                      ++|+++.|+...    ++++|||++.+||++||+||||||||||.++|+|+..| ++|+|.++|++....    .+.+.+
T Consensus         6 v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p-~~G~I~~~G~~~~~~~~~~~~~~~V   84 (252)
T COG1124           6 VRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKP-SSGSILLDGKPLAPKKRAKAFYRPV   84 (252)
T ss_pred             EeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCC-CCceEEECCcccCccccchhhccce
Confidence            478999998887    99999999999999999999999999999999999999 699999999887553    356779


Q ss_pred             EEEcCCC--CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHHHhhC
Q psy8250          73 GFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQTIIV  149 (212)
Q Consensus        73 ~~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~al~~~  149 (212)
                      .+|||+|  .+.|..||.+.+..+...+.   .+  +..+++.++++.+|+. ..++++|.+|||||+||++|||||+.+
T Consensus        85 QmVFQDp~~SLnP~~tv~~~l~Epl~~~~---~~--~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~  159 (252)
T COG1124          85 QMVFQDPYSSLNPRRTVGRILSEPLRPHG---LS--KSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPE  159 (252)
T ss_pred             eEEecCCccccCcchhHHHHHhhhhccCC---cc--HHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccC
Confidence            9999998  46789999999988766432   22  2334489999999996 578999999999999999999999999


Q ss_pred             CCeEEecCCCC-CChhhHHHHHHHHHHHHhhcC------cchHHHHHHH---HHHHHhcCeeecCCchhhh
Q psy8250         150 QSGFVPQHDLT-VDTLTVHEHMTLMARLKMDRN------LHHVERARTV---DALLKELGLLKCRPADELN  210 (212)
Q Consensus       150 p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~~------~h~~~~~~~~---~~~l~~g~~~~~~~~~~~~  210 (212)
                      |++|||||||| ||+..+.+++++|.+++++.+      +||+..+...   ..+|++|+++..++++++.
T Consensus       160 PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~  230 (252)
T COG1124         160 PKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELL  230 (252)
T ss_pred             CCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhh
Confidence            99999999999 999999999999999998753      7999888764   3589999999999988764

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.3e-52  Score=360.59  Aligned_cols=207  Identities=24%  Similarity=0.311  Sum_probs=185.5

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHD   79 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~   79 (212)
                      ++++++.|+++.+|+|+||++++|++++|+|||||||||||++|+|+.+| ++|+|.++|+++... ..++.+||+||++
T Consensus         7 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p-~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~   85 (353)
T TIGR03265         7 IDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQ-TAGTIYQGGRDITRLPPQKRDYGIVFQSY   85 (353)
T ss_pred             EEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC-CceEEEECCEECCCCCHHHCCEEEEeCCc
Confidence            46899999988899999999999999999999999999999999999998 699999999998542 2356799999999


Q ss_pred             CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCC
Q psy8250          80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDL  159 (212)
Q Consensus        80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt  159 (212)
                      .+||.+||+||+.|+...+   ..+..+...++.++++.++|.++.++++.+|||||||||+|||||+.+|+++|||||+
T Consensus        86 ~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~  162 (353)
T TIGR03265        86 ALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPL  162 (353)
T ss_pred             ccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence            9999999999999976542   2345566778999999999999999999999999999999999999999999999999


Q ss_pred             C-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250         160 T-VDTLTVHEHMTLMARLKMDR------NLHHVERARTV-D--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       160 ~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      + ||+..+.++.+.|+++.++.      +|||.+++... +  .+|++|+++..|+++++.+
T Consensus       163 s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~  224 (353)
T TIGR03265       163 SALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYR  224 (353)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            9 99999999999999987652      37999988664 3  5899999999999999875

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.4e-52  Score=359.44  Aligned_cols=207  Identities=21%  Similarity=0.316  Sum_probs=185.6

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccc-ccceEEEEcCCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL-MVKVSGFVPQHD   79 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~-~~~~i~~v~Q~~   79 (212)
                      ++++++.|++..+|+|+||++++||+++|+|||||||||||++|+|+++| ++|+|.++|.++.... .++.++|+||++
T Consensus         9 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p-~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~   87 (351)
T PRK11432          9 LKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKP-TEGQIFIDGEDVTHRSIQQRDICMVFQSY   87 (351)
T ss_pred             EEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC-CceEEEECCEECCCCCHHHCCEEEEeCCc
Confidence            36899999988899999999999999999999999999999999999999 6999999999986432 356799999999


Q ss_pred             CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCC
Q psy8250          80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDL  159 (212)
Q Consensus        80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt  159 (212)
                      .+|+++||+||+.|+...+   ..+..+..+++.++++.+++.++.++++.+|||||||||+|||||+.+|++||||||+
T Consensus        88 ~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~  164 (351)
T PRK11432         88 ALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPL  164 (351)
T ss_pred             ccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence            9999999999999986543   2345566778999999999999999999999999999999999999999999999999


Q ss_pred             C-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHH---HHHHHhcCeeecCCchhhhc
Q psy8250         160 T-VDTLTVHEHMTLMARLKMDR------NLHHVERARTV---DALLKELGLLKCRPADELNR  211 (212)
Q Consensus       160 ~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~---~~~l~~g~~~~~~~~~~~~~  211 (212)
                      + ||+..+.++.+.|++++++.      +|||.+++...   ..+|++|+++..|+++++++
T Consensus       165 s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~  226 (351)
T PRK11432        165 SNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYR  226 (351)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            9 99999999999999997652      37999988664   35889999999999999865

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=100.00  E-value=7.4e-52  Score=356.73  Aligned_cols=206  Identities=22%  Similarity=0.333  Sum_probs=181.5

Q ss_pred             CcccccccCC----cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc------cccc
Q psy8250           1 METFHPLFGD----TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN------LMVK   70 (212)
Q Consensus         1 ~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~------~~~~   70 (212)
                      +++++++|++    ..+|+||||+|++|+++||+||||||||||+|+|+|+++| ++|+|+++|.++...      ..++
T Consensus         4 ~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p-~~G~I~i~G~~i~~~~~~~l~~~r~   82 (343)
T TIGR02314         4 LSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP-TSGSVIVDGQDLTTLSNSELTKARR   82 (343)
T ss_pred             EEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEECCcCCHHHHHHHhc
Confidence            4689999952    4699999999999999999999999999999999999999 699999999998542      2356


Q ss_pred             eEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCC
Q psy8250          71 VSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQ  150 (212)
Q Consensus        71 ~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p  150 (212)
                      .+||+||++.+++.+||+||+.++....   +.+..+..+++.++++.+|+.+..++++.+|||||||||+|||||+.+|
T Consensus        83 ~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P  159 (343)
T TIGR02314        83 QIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNP  159 (343)
T ss_pred             CEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCC
Confidence            7999999999999999999999876532   2345566678899999999999999999999999999999999999999


Q ss_pred             CeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         151 SGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       151 ~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      ++|||||||+ ||+.++..++++|++++++ +     .||+++.+... +  .+|++|++++.|+++++.
T Consensus       160 ~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~  229 (343)
T TIGR02314       160 KVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIF  229 (343)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            9999999999 9999999999999999875 2     27999998764 3  478999999999988874

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=100.00  E-value=1.2e-51  Score=357.88  Aligned_cols=207  Identities=24%  Similarity=0.314  Sum_probs=184.9

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCc--eEEEECCEeCCcc-cccceEEEEcC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVD--GQILLNGLEVEKN-LMVKVSGFVPQ   77 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~--G~I~~~g~~~~~~-~~~~~i~~v~Q   77 (212)
                      ++++++.|++..+|+|+||+|++|++++|+|||||||||||++|+|+.+| ++  |+|.++|+++... ..++.++|+||
T Consensus         8 ~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p-~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ   86 (362)
T TIGR03258         8 IDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKA-AGLTGRIAIADRDLTHAPPHKRGLALLFQ   86 (362)
T ss_pred             EEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCCEEEEECCEECCCCCHHHCCEEEEEC
Confidence            46899999988899999999999999999999999999999999999998 69  9999999998542 23567999999


Q ss_pred             CCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecC
Q psy8250          78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQH  157 (212)
Q Consensus        78 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDE  157 (212)
                      ++.+|+.+||+||+.|+...+   ..+..+...++.++++.++|.+..++++.+|||||||||+|||||+.+|++|||||
T Consensus        87 ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDE  163 (362)
T TIGR03258        87 NYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDE  163 (362)
T ss_pred             CcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            999999999999999976543   23455666789999999999999999999999999999999999999999999999


Q ss_pred             CCC-CChhhHHHHHHHHHHHHhh--c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250         158 DLT-VDTLTVHEHMTLMARLKMD--R-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       158 Pt~-lD~~~~~~~~~~l~~l~~~--~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      ||+ ||+..+.++.+.|++++++  .     +|||.+++... +  .+|++|+++..|+++++.+
T Consensus       164 P~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~  228 (362)
T TIGR03258       164 PLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYD  228 (362)
T ss_pred             ccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            999 9999999999999999875  2     27999998664 2  4789999999999999865

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=100.00  E-value=2.1e-51  Score=337.49  Aligned_cols=207  Identities=26%  Similarity=0.346  Sum_probs=179.4

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc------cccceEEE
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN------LMVKVSGF   74 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~------~~~~~i~~   74 (212)
                      ++++++.|+++.+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++...      .+++.++|
T Consensus         3 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p-~~G~i~~~g~~~~~~~~~~~~~~~~~i~~   81 (235)
T cd03261           3 LRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRP-DSGEVLIDGEDISGLSEAELYRLRRRMGM   81 (235)
T ss_pred             EEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEccccChhhHHHHhcceEE
Confidence            46899999888899999999999999999999999999999999999998 699999999987431      24567999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEE
Q psy8250          75 VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFV  154 (212)
Q Consensus        75 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~lli  154 (212)
                      +||++.+++.+|+.||+.++.....  .....+...++.++++.+++.+..++++.+|||||||||+|||||+.+|++||
T Consensus        82 v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lll  159 (235)
T cd03261          82 LFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLL  159 (235)
T ss_pred             EccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            9999999999999999988644221  12334445678899999999988899999999999999999999999999999


Q ss_pred             ecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         155 PQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       155 lDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      |||||+ ||+.++..++++|++++.+ .     .+|+++.+... +  .+|++|+++..|+++++.
T Consensus       160 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  225 (235)
T cd03261         160 YDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELR  225 (235)
T ss_pred             ecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHc
Confidence            999999 9999999999999998764 2     27999988664 3  468899999999988874

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=100.00  E-value=2.2e-51  Score=355.44  Aligned_cols=210  Identities=25%  Similarity=0.324  Sum_probs=184.4

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHD   79 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~   79 (212)
                      ++++++.|++..+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++... ..++.++|+||++
T Consensus         5 i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p-~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~   83 (353)
T PRK10851          5 IANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQ-TSGHIRFHGTDVSRLHARDRKVGFVFQHY   83 (353)
T ss_pred             EEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEECCCCCHHHCCEEEEecCc
Confidence            46899999988899999999999999999999999999999999999998 699999999998542 2346799999999


Q ss_pred             CCCCCCCHHHHHHHHHhhhcc-cCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250          80 LTVDTLTVHEHMTLMARLKMD-RNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD  158 (212)
Q Consensus        80 ~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP  158 (212)
                      .+|+.+||+||+.++...... ...+..+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++||||||
T Consensus        84 ~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP  163 (353)
T PRK10851         84 ALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEP  163 (353)
T ss_pred             ccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            999999999999987653210 1223455667889999999999999999999999999999999999999999999999


Q ss_pred             CC-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250         159 LT-VDTLTVHEHMTLMARLKMDR------NLHHVERARTV-D--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       159 t~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      |+ ||+..+..+.+.|++++++.      .|||.+++... +  .+|++|+++..|+++++.+
T Consensus       164 ~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~  226 (353)
T PRK10851        164 FGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR  226 (353)
T ss_pred             CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            99 99999999999999998752      37999998764 3  4789999999999998864

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=100.00  E-value=2.4e-51  Score=353.66  Aligned_cols=207  Identities=24%  Similarity=0.261  Sum_probs=182.5

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc--cccceEEEEcCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN--LMVKVSGFVPQH   78 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~--~~~~~i~~v~Q~   78 (212)
                      ++++++.|+++.+|+||||+|++|+++||+||||||||||+++|+|++.| ++|+|.++|.++...  ..++.+||+||+
T Consensus        44 i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p-~~G~i~i~G~~~~~~~~~~~~~ig~v~q~  122 (340)
T PRK13536         44 LAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSP-DAGKITVLGVPVPARARLARARIGVVPQF  122 (340)
T ss_pred             EEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC-CceEEEECCEECCcchHHHhccEEEEeCC
Confidence            46899999999999999999999999999999999999999999999999 699999999988532  345679999999


Q ss_pred             CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250          79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD  158 (212)
Q Consensus        79 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP  158 (212)
                      +.+++.+|+.||+.+....+.   ....+...++.++++.+++.+..++++.+||||||||++||+||+.+|+++|||||
T Consensus       123 ~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEP  199 (340)
T PRK13536        123 DNLDLEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEP  199 (340)
T ss_pred             ccCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence            999999999999987665432   23334455678899999999999999999999999999999999999999999999


Q ss_pred             CC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHHH---HHHHhcCeeecCCchhhhc
Q psy8250         159 LT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTVD---ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       159 t~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~~  211 (212)
                      |+ ||+.++..++++|++++.++     .+|+++++...+   .+|++|+++++|+++++.+
T Consensus       200 t~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~  261 (340)
T PRK13536        200 TTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALID  261 (340)
T ss_pred             CCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            99 99999999999999997653     279999987643   4789999999999998753

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=1.3e-52  Score=328.35  Aligned_cols=208  Identities=25%  Similarity=0.380  Sum_probs=184.1

Q ss_pred             cccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccc----cceEEEEcC
Q psy8250           2 ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLM----VKVSGFVPQ   77 (212)
Q Consensus         2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~----~~~i~~v~Q   77 (212)
                      +++.|+|++++++++|||++++||++||+|||||||||.+.++.|+..| ++|+|+++|.+++...+    +.-+||+||
T Consensus         8 ~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~-d~G~i~ld~~diT~lPm~~RArlGigYLpQ   86 (243)
T COG1137           8 ENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRP-DSGKILLDDEDITKLPMHKRARLGIGYLPQ   86 (243)
T ss_pred             hhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEec-CCceEEECCcccccCChHHHhhcCcccccc
Confidence            5899999999999999999999999999999999999999999999999 69999999999986432    335899999


Q ss_pred             CCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecC
Q psy8250          78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQH  157 (212)
Q Consensus        78 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDE  157 (212)
                      ++..|-.+||.||+......+.. .....+.+.+++++|+.|.+.+..+.+..+||||||+|+.|||||+.+|+.++|||
T Consensus        87 E~SIFr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDE  165 (243)
T COG1137          87 EASIFRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDE  165 (243)
T ss_pred             cchHhhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecC
Confidence            99999999999999987766531 22234556678899999999999999999999999999999999999999999999


Q ss_pred             CCC-CChhhHHHHHHHHHHHHhhcC-----cchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250         158 DLT-VDTLTVHEHMTLMARLKMDRN-----LHHVERARTV-D--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       158 Pt~-lD~~~~~~~~~~l~~l~~~~~-----~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      ||+ .||.+...|.++++.|+..+.     -|+..+.-.. +  +++++|+++++|+|+++.+
T Consensus       166 PFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~  228 (243)
T COG1137         166 PFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVN  228 (243)
T ss_pred             CccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhc
Confidence            999 999999999999999998642     4888765443 3  5899999999999999864

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=8.7e-52  Score=333.02  Aligned_cols=209  Identities=18%  Similarity=0.213  Sum_probs=185.6

Q ss_pred             cccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccc----ccceEEEEcC
Q psy8250           2 ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL----MVKVSGFVPQ   77 (212)
Q Consensus         2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~----~~~~i~~v~Q   77 (212)
                      ++++|+||+..+++||||++++||+++||||||||||||+|+|+|+++| ++|+|.++|++++...    .+.-++..||
T Consensus         8 ~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P-~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ   86 (250)
T COG0411           8 RGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKP-SSGTVIFRGRDITGLPPHRIARLGIARTFQ   86 (250)
T ss_pred             ccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccC-CCceEEECCcccCCCCHHHHHhccceeecc
Confidence            6899999999999999999999999999999999999999999999999 6999999999997532    2445788999


Q ss_pred             CCCCCCCCCHHHHHHHHHhhhc-------ccC--CCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhh
Q psy8250          78 HDLTVDTLTVHEHMTLMARLKM-------DRN--LHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTII  148 (212)
Q Consensus        78 ~~~~~~~ltv~e~l~~~~~~~~-------~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~  148 (212)
                      .+.+|++|||.||+..+...+.       ...  ....+..+++.++|+.+||.+.++++.++||+|||+|+.|||||+.
T Consensus        87 ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~  166 (250)
T COG0411          87 ITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALAT  166 (250)
T ss_pred             cccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhc
Confidence            9999999999999998754221       000  1245667789999999999999999999999999999999999999


Q ss_pred             CCCeEEecCCCC-CChhhHHHHHHHHHHHHhhcC------cchHHHHHHHH---HHHHhcCeeecCCchhhhc
Q psy8250         149 VQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDRN------LHHVERARTVD---ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       149 ~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~~------~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~~  211 (212)
                      +|++|+||||.+ +.+....++.++|++++++.+      .||+..+...+   .+|+.|+++++|+|++++.
T Consensus       167 ~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~  239 (250)
T COG0411         167 QPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRN  239 (250)
T ss_pred             CCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHhc
Confidence            999999999999 999999999999999998642      49999998754   4899999999999999874

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.1e-51  Score=337.75  Aligned_cols=206  Identities=22%  Similarity=0.266  Sum_probs=184.2

Q ss_pred             cccccccCCc-ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCC----cccccceEEEEc
Q psy8250           2 ETFHPLFGDT-NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE----KNLMVKVSGFVP   76 (212)
Q Consensus         2 ~~l~~~~~~~-~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~----~~~~~~~i~~v~   76 (212)
                      ++++++|++. .+++++||+|++|++++|+||||||||||+++++|++.| ++|.|.++|.++.    ...+++.+||||
T Consensus         7 ~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p-~~G~v~~~g~~~~~~~~~~~~~~~vG~Vf   85 (235)
T COG1122           7 ENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKP-TSGEVLVDGLDTSSEKSLLELRQKVGLVF   85 (235)
T ss_pred             EEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcC-CCCEEEECCeeccchhhHHHhhcceEEEE
Confidence            5788899765 899999999999999999999999999999999999999 6999999999876    235688899999


Q ss_pred             CCCC-CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEe
Q psy8250          77 QHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVP  155 (212)
Q Consensus        77 Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llil  155 (212)
                      |+|. .+...||.+.++|+....   +.+.++...++.++++.+|+.+++++.+.+|||||||||+||.+|+++|++|||
T Consensus        86 Qnpd~q~~~~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliL  162 (235)
T COG1122          86 QNPDDQLFGPTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLL  162 (235)
T ss_pred             ECcccccccCcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEE
Confidence            9983 345569999999987643   456677889999999999999999999999999999999999999999999999


Q ss_pred             cCCCC-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250         156 QHDLT-VDTLTVHEHMTLMARLKMDR------NLHHVERARTV-D--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       156 DEPt~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      ||||+ ||+.+++++++++++++.+.      .|||++.+..+ +  .+|++|+++++|+|.++-+
T Consensus       163 DEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~  228 (235)
T COG1122         163 DEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFN  228 (235)
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence            99999 99999999999999998874      27999999874 3  4789999999999888753

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=100.00  E-value=3.6e-51  Score=356.26  Aligned_cols=207  Identities=22%  Similarity=0.271  Sum_probs=184.2

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHD   79 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~   79 (212)
                      ++++++.|++..+|+++||++++|++++|+|||||||||||++|+|+++| ++|+|.++|+++... ..++.++|+||++
T Consensus        17 l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p-~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~   95 (375)
T PRK09452         17 LRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETP-DSGRIMLDGQDITHVPAENRHVNTVFQSY   95 (375)
T ss_pred             EEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-CceEEEECCEECCCCCHHHCCEEEEecCc
Confidence            46899999988899999999999999999999999999999999999998 699999999998542 2356799999999


Q ss_pred             CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCC
Q psy8250          80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDL  159 (212)
Q Consensus        80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt  159 (212)
                      .+|+.+||+||+.|+...+   +.+..+...++.++++.+++.+..++++.+|||||||||+|||||+.+|++||||||+
T Consensus        96 ~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~  172 (375)
T PRK09452         96 ALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESL  172 (375)
T ss_pred             ccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            9999999999999976533   2344555667899999999999999999999999999999999999999999999999


Q ss_pred             C-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250         160 T-VDTLTVHEHMTLMARLKMDR------NLHHVERARTV-D--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       160 ~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      + ||...+..+.+.|++++++.      +|||.+++... +  .+|++|+++..|+++++++
T Consensus       173 s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~  234 (375)
T PRK09452        173 SALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYE  234 (375)
T ss_pred             CcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            9 99999999999999998752      37999988664 3  5789999999999999865

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=100.00  E-value=7.4e-51  Score=352.54  Aligned_cols=202  Identities=24%  Similarity=0.318  Sum_probs=179.5

Q ss_pred             cccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cc----cceEEEEcCC
Q psy8250           6 PLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LM----VKVSGFVPQH   78 (212)
Q Consensus         6 ~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~----~~~i~~v~Q~   78 (212)
                      |.|+++.+++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|.++...   .+    ++.++|+||+
T Consensus         1 ~~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p-~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~   79 (363)
T TIGR01186         1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEP-TAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQ   79 (363)
T ss_pred             CccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCC-CceEEEECCEECCcCCHHHHHHHHhCcEEEEECC
Confidence            578888999999999999999999999999999999999999999 699999999998642   12    5689999999


Q ss_pred             CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250          79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD  158 (212)
Q Consensus        79 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP  158 (212)
                      +.+|+++||+||+.+.....   +....+..+++.++++.+||....++++.+|||||||||+|||||+.+|++||||||
T Consensus        80 ~~l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP  156 (363)
T TIGR01186        80 FALFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEA  156 (363)
T ss_pred             CcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            99999999999999876543   234556667889999999999999999999999999999999999999999999999


Q ss_pred             CC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250         159 LT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       159 t~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      |+ ||+.++..+.+.+.+++++ +     +|||++++... +  .+|++|+++..|+++++.+
T Consensus       157 ~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~  219 (363)
T TIGR01186       157 FSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILR  219 (363)
T ss_pred             cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHh
Confidence            99 9999999999999999764 2     37999988664 2  4789999999999998753

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.9e-51  Score=354.85  Aligned_cols=208  Identities=21%  Similarity=0.271  Sum_probs=184.5

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHD   79 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~   79 (212)
                      ++++++.|++..+|+++||++++|++++|+|||||||||||++|+|+.+| ++|+|+++|+++... ..++.+||+||++
T Consensus        22 l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p-~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~  100 (377)
T PRK11607         22 IRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQP-TAGQIMLDGVDLSHVPPYQRPINMMFQSY  100 (377)
T ss_pred             EEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-CceEEEECCEECCCCCHHHCCEEEEeCCC
Confidence            46899999988899999999999999999999999999999999999999 699999999988542 3456799999999


Q ss_pred             CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCC
Q psy8250          80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDL  159 (212)
Q Consensus        80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt  159 (212)
                      .+|+.+||.||+.|+....   ..+..+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++||||||+
T Consensus       101 ~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~  177 (377)
T PRK11607        101 ALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPM  177 (377)
T ss_pred             ccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence            9999999999999876533   2345566678899999999999999999999999999999999999999999999999


Q ss_pred             C-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHH-H--HHHHhcCeeecCCchhhhcC
Q psy8250         160 T-VDTLTVHEHMTLMARLKMDR------NLHHVERARTV-D--ALLKELGLLKCRPADELNRQ  212 (212)
Q Consensus       160 ~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~~  212 (212)
                      + ||+..+..+.+.|+++.++.      +|||.+++... +  .+|++|+++..|+++++.++
T Consensus       178 s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~  240 (377)
T PRK11607        178 GALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEH  240 (377)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhC
Confidence            9 99999999999999886642      37999988764 3  47899999999999998753

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=100.00  E-value=1e-50  Score=330.39  Aligned_cols=206  Identities=25%  Similarity=0.372  Sum_probs=179.2

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc--ccccceEEEEcCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK--NLMVKVSGFVPQH   78 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~--~~~~~~i~~v~Q~   78 (212)
                      ++++++.|+++.+|+|+||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++..  ...++.++|+||+
T Consensus         3 ~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~~~~i~~~~q~   81 (220)
T cd03265           3 VENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKP-TSGRATVAGHDVVREPREVRRRIGIVFQD   81 (220)
T ss_pred             EEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEecCcChHHHhhcEEEecCC
Confidence            47899999888899999999999999999999999999999999999988 69999999988743  2234679999999


Q ss_pred             CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250          79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD  158 (212)
Q Consensus        79 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP  158 (212)
                      +.+++.+|+++|+.+....+   .....+...++.++++.+++.+..++++.+||||||||++|||||+.+|+++|||||
T Consensus        82 ~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEP  158 (220)
T cd03265          82 LSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEP  158 (220)
T ss_pred             ccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            99999999999998865432   122334556788999999999888999999999999999999999999999999999


Q ss_pred             CC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         159 LT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       159 t~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      |+ ||+.++..++++|++++.+ .     .+|+.+.+... +  .+|++|+++..+++++++
T Consensus       159 t~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  220 (220)
T cd03265         159 TIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEELK  220 (220)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHcC
Confidence            99 9999999999999998765 3     27999988764 3  478899999999888763

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.8e-51  Score=353.84  Aligned_cols=207  Identities=23%  Similarity=0.284  Sum_probs=182.5

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHD   79 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~   79 (212)
                      ++++++.|+++.+|+|+||+|++|++++|+|||||||||||++|+|+++| ++|+|.++|+++... ..++.++|+||++
T Consensus         6 i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p-~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~   84 (369)
T PRK11000          6 LRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDI-TSGDLFIGEKRMNDVPPAERGVGMVFQSY   84 (369)
T ss_pred             EEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-CceEEEECCEECCCCCHhHCCEEEEeCCc
Confidence            46899999988899999999999999999999999999999999999999 699999999988542 2346799999999


Q ss_pred             CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCC
Q psy8250          80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDL  159 (212)
Q Consensus        80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt  159 (212)
                      .+|+.+||+||+.++....   ..+..+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus        85 ~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPt  161 (369)
T PRK11000         85 ALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL  161 (369)
T ss_pred             ccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence            9999999999999876532   2234455677899999999999999999999999999999999999999999999999


Q ss_pred             C-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250         160 T-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       160 ~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      + ||+.++..+++.|++++.+ .     .|||.+++... +  .+|++|+++..|+++++.+
T Consensus       162 s~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~  223 (369)
T PRK11000        162 SNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH  223 (369)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            9 9999999999999998765 2     37999988664 3  4788999999999998854

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=100.00  E-value=8.8e-51  Score=345.53  Aligned_cols=202  Identities=24%  Similarity=0.368  Sum_probs=177.3

Q ss_pred             cccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc--cccceEEEEcCCCCCCC
Q psy8250           6 PLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN--LMVKVSGFVPQHDLTVD   83 (212)
Q Consensus         6 ~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~--~~~~~i~~v~Q~~~~~~   83 (212)
                      |.|+++.+|+|+||+|++|+++||+||||||||||+++|+|+++| ++|+|.++|.++...  ..++.+||+||++.+++
T Consensus         1 k~y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~   79 (302)
T TIGR01188         1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRP-TSGTARVAGYDVVREPRKVRRSIGIVPQYASVDE   79 (302)
T ss_pred             CeeCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEcccCHHHHHhhcEEecCCCCCCC
Confidence            468888899999999999999999999999999999999999999 699999999987532  34567999999999999


Q ss_pred             CCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CC
Q psy8250          84 TLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VD  162 (212)
Q Consensus        84 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD  162 (212)
                      .+|++||+.+....+.   ....+..+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||+ ||
T Consensus        80 ~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD  156 (302)
T TIGR01188        80 DLTGRENLEMMGRLYG---LPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLD  156 (302)
T ss_pred             CCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence            9999999998665432   2334455678899999999988999999999999999999999999999999999999 99


Q ss_pred             hhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250         163 TLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       163 ~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      +.+++.++++|+++++++     .+|+++++... +  .+|++|+++..|+++++.+
T Consensus       157 ~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~  213 (302)
T TIGR01188       157 PRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKR  213 (302)
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence            999999999999997653     27999988764 3  4788999999999988753

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=100.00  E-value=1.9e-50  Score=343.70  Aligned_cols=206  Identities=24%  Similarity=0.273  Sum_probs=179.7

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc--cccceEEEEcCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN--LMVKVSGFVPQH   78 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~--~~~~~i~~v~Q~   78 (212)
                      ++++++.|+++.+|+++||+|++|+++||+||||||||||+++|+|+++| ++|+|.++|.++...  ..++.+||+||+
T Consensus         7 ~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~i~~v~q~   85 (303)
T TIGR01288         7 LVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISP-DRGKITVLGEPVPSRARLARVAIGVVPQF   85 (303)
T ss_pred             EEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEECcccHHHHhhcEEEEecc
Confidence            46899999988899999999999999999999999999999999999998 699999999987432  245679999999


Q ss_pred             CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250          79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD  158 (212)
Q Consensus        79 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP  158 (212)
                      +.+++.+|+.||+.+....+.   ....+....+.++++.+++.+..++++.+||||||||++|||||+.+|++||||||
T Consensus        86 ~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP  162 (303)
T TIGR01288        86 DNLDPEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEP  162 (303)
T ss_pred             ccCCcCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            999999999999987554321   23334455678899999999889999999999999999999999999999999999


Q ss_pred             CC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         159 LT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       159 t~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      |+ ||+.++..++++|++++.++     .+|+++++... +  .+|++|+++..|+++++.
T Consensus       163 t~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  223 (303)
T TIGR01288       163 TTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALI  223 (303)
T ss_pred             CcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            99 99999999999999997653     27999988764 3  478899999999998874

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=100.00  E-value=2.1e-50  Score=343.10  Aligned_cols=207  Identities=21%  Similarity=0.341  Sum_probs=182.4

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc--cccceEEEEcCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN--LMVKVSGFVPQH   78 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~--~~~~~i~~v~Q~   78 (212)
                      +++++++|+++.+|+|+||++++|+++||+||||||||||+++|+|++.| ++|+|.++|.++...  ..++.+||+||+
T Consensus         5 ~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~-~~G~i~i~g~~~~~~~~~~~~~ig~~~q~   83 (301)
T TIGR03522         5 VSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPP-DSGSVQVCGEDVLQNPKEVQRNIGYLPEH   83 (301)
T ss_pred             EEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEcccChHHHHhceEEecCC
Confidence            46899999988999999999999999999999999999999999999998 699999999988542  345679999999


Q ss_pred             CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250          79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD  158 (212)
Q Consensus        79 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP  158 (212)
                      +.+++.+|+.||+.+....+.   .+..+...+++++++.+|+.+..++++..||+|||||++|||||+.+|+++|||||
T Consensus        84 ~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEP  160 (301)
T TIGR03522        84 NPLYLDMYVREYLQFIAGIYG---MKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEP  160 (301)
T ss_pred             CCCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            999999999999998765432   23344556788999999999999999999999999999999999999999999999


Q ss_pred             CC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH---HHHHhcCeeecCCchhhhc
Q psy8250         159 LT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD---ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       159 t~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~~  211 (212)
                      |+ ||+.+++.++++|+++++..    .+|+++++...+   .+|++|++++.|+++++.+
T Consensus       161 t~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  221 (301)
T TIGR03522       161 TTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA  221 (301)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence            99 99999999999999997532    279999887643   4789999999999998753

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=100.00  E-value=4e-50  Score=325.27  Aligned_cols=200  Identities=29%  Similarity=0.359  Sum_probs=171.4

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHD   79 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~   79 (212)
                      ++++++.|+++.+|+|+||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++... ..++.++|+||++
T Consensus         3 ~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p-~~G~i~~~g~~~~~~~~~~~~i~~v~q~~   81 (213)
T cd03259           3 LKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERP-DSGEILIDGRDVTGVPPERRNIGMVFQDY   81 (213)
T ss_pred             eeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEEcCcCchhhccEEEEcCch
Confidence            47899999888899999999999999999999999999999999999998 699999999987532 2345799999999


Q ss_pred             CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCC
Q psy8250          80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDL  159 (212)
Q Consensus        80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt  159 (212)
                      .+++.+|++||+.+.....   ..........+.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||
T Consensus        82 ~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt  158 (213)
T cd03259          82 ALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPL  158 (213)
T ss_pred             hhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence            9999999999998765432   1233344567889999999998889999999999999999999999999999999999


Q ss_pred             C-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecC
Q psy8250         160 T-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCR  204 (212)
Q Consensus       160 ~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~  204 (212)
                      + ||+.++..++++|++++++ .     .+|+.+.+... +  .+|++|++++.|
T Consensus       159 ~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g  213 (213)
T cd03259         159 SALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG  213 (213)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence            9 9999999999999998764 2     27999887654 3  367788876654

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.7e-50  Score=347.03  Aligned_cols=206  Identities=22%  Similarity=0.333  Sum_probs=179.7

Q ss_pred             CcccccccC----CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc------cccc
Q psy8250           1 METFHPLFG----DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN------LMVK   70 (212)
Q Consensus         1 ~~~l~~~~~----~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~------~~~~   70 (212)
                      +++++++|+    ++.+|+|+||+|++|+++||+||||||||||+|+|+|+++| ++|+|.++|.++...      ..++
T Consensus         4 i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p-~~G~I~~~g~~i~~~~~~~~~~~~~   82 (343)
T PRK11153          4 LKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERP-TSGRVLVDGQDLTALSEKELRKARR   82 (343)
T ss_pred             EEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-CceEEEECCEECCcCCHHHHHHHhc
Confidence            468999997    46799999999999999999999999999999999999998 699999999988532      1356


Q ss_pred             eEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCC
Q psy8250          71 VSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQ  150 (212)
Q Consensus        71 ~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p  150 (212)
                      .++|+||++.+++.+|+.||+.++....   +.+..+...++.++++.+|+.+..++++.+||||||||++|||||+.+|
T Consensus        83 ~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p  159 (343)
T PRK11153         83 QIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNP  159 (343)
T ss_pred             CEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCC
Confidence            7999999999999999999999875433   2234445567889999999999899999999999999999999999999


Q ss_pred             CeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         151 SGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       151 ~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      ++|||||||+ ||+.++..++++|++++++ +     .+|+++.+... +  .+|++|+++..|+++++.
T Consensus       160 ~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~  229 (343)
T PRK11153        160 KVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVF  229 (343)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            9999999999 9999999999999999764 2     27999988664 3  478899999999988774

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=100.00  E-value=4.2e-50  Score=326.52  Aligned_cols=206  Identities=27%  Similarity=0.408  Sum_probs=178.5

Q ss_pred             CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc--ccccceEEEEc
Q psy8250           1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK--NLMVKVSGFVP   76 (212)
Q Consensus         1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~--~~~~~~i~~v~   76 (212)
                      ++++++.|++  +.+|+|+||++++|++++|+||||||||||+++|+|+++| ++|+|+++|.++..  ..+++.++|++
T Consensus         3 ~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~i~~v~   81 (220)
T cd03263           3 IRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRP-TSGTAYINGYSIRTDRKAARQSLGYCP   81 (220)
T ss_pred             EEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEecccchHHHhhhEEEec
Confidence            4689999987  7899999999999999999999999999999999999998 69999999998753  23456799999


Q ss_pred             CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250          77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ  156 (212)
Q Consensus        77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD  156 (212)
                      |++.+++.+|+.+|+.+....+.   ....+..+.+.++++.+++.+..++++.+||+|||||++|||||+.+|++||||
T Consensus        82 q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD  158 (220)
T cd03263          82 QFDALFDELTVREHLRFYARLKG---LPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLD  158 (220)
T ss_pred             CcCCccccCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEC
Confidence            99999989999999988654332   223344567889999999998889999999999999999999999999999999


Q ss_pred             CCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         157 HDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       157 EPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      |||+ ||+.+++.++++|++++...    .+|+++.+... +  .+|++|+++..|++++++
T Consensus       159 EP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~  220 (220)
T cd03263         159 EPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQELK  220 (220)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHcC
Confidence            9999 99999999999999987642    37999988664 3  468899999999988763

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=100.00  E-value=6.4e-50  Score=328.65  Aligned_cols=210  Identities=20%  Similarity=0.266  Sum_probs=179.1

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccc----ccceEEEEc
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL----MVKVSGFVP   76 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~----~~~~i~~v~   76 (212)
                      ++++++.|+++.+|+++||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++....    .++.++|+|
T Consensus         3 ~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~~i~~v~   81 (236)
T cd03219           3 VRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRP-TSGSVLFDGEDITGLPPHEIARLGIGRTF   81 (236)
T ss_pred             eeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCC-CCceEEECCEECCCCCHHHHHhcCEEEEe
Confidence            47899999888899999999999999999999999999999999999988 6999999999875421    235699999


Q ss_pred             CCCCCCCCCCHHHHHHHHHhhhcccC-------CCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhC
Q psy8250          77 QHDLTVDTLTVHEHMTLMARLKMDRN-------LHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIV  149 (212)
Q Consensus        77 Q~~~~~~~ltv~e~l~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~  149 (212)
                      |++.+++.+|++||+.+.........       ....+....+.++++.+|+.+..++++.+||||||||++|||||+.+
T Consensus        82 q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~  161 (236)
T cd03219          82 QIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATD  161 (236)
T ss_pred             cccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcC
Confidence            99999999999999988654321110       01234455788999999999889999999999999999999999999


Q ss_pred             CCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250         150 QSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       150 p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      |+++||||||+ ||+.++..++++|++++.++     .+|+++.+... +  .+|++|+++..|+++++.+
T Consensus       162 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  232 (236)
T cd03219         162 PKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN  232 (236)
T ss_pred             CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence            99999999999 99999999999999987543     37999988664 3  4788999999999888753

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=100.00  E-value=8.9e-50  Score=328.71  Aligned_cols=209  Identities=28%  Similarity=0.333  Sum_probs=177.9

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHD   79 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~   79 (212)
                      ++++++.|++..+|+|+||++++|++++|+||||||||||+++|+|+++| ++|+|+++|.++... ..++.++|++|++
T Consensus         5 ~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~i~~v~q~~   83 (239)
T cd03296           5 VRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERP-DSGTILFGGEDATDVPVQERNVGFVFQHY   83 (239)
T ss_pred             EEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEECCcCCccccceEEEecCC
Confidence            47899999888899999999999999999999999999999999999988 699999999987532 2245699999999


Q ss_pred             CCCCCCCHHHHHHHHHhhhccc-CCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250          80 LTVDTLTVHEHMTLMARLKMDR-NLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD  158 (212)
Q Consensus        80 ~~~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP  158 (212)
                      .+++.+|+.||+.++....... .....+..+.+.++++.+++.+..++++.+||+|||||++|||||+.+|++||||||
T Consensus        84 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP  163 (239)
T cd03296          84 ALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEP  163 (239)
T ss_pred             cccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            9998899999998865432110 012233445678899999999888999999999999999999999999999999999


Q ss_pred             CC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         159 LT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       159 t~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      |+ ||+.+++.++++|.+++.+ .     .+|+++.+... +  .+|++|+++..|+++++.
T Consensus       164 ~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  225 (239)
T cd03296         164 FGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVY  225 (239)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHh
Confidence            99 9999999999999999764 2     26999887653 3  468899999999988874

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=100.00  E-value=9.6e-50  Score=326.81  Aligned_cols=206  Identities=26%  Similarity=0.395  Sum_probs=177.9

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---c-ccceEEEEc
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---L-MVKVSGFVP   76 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~-~~~~i~~v~   76 (212)
                      ++++++.|+++.+|+++||++.+|++++|+||||||||||+++|+|+++| ++|+|+++|.++...   . .++.++|+|
T Consensus         3 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~~i~~~~   81 (232)
T cd03218           3 AENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKP-DSGKILLDGQDITKLPMHKRARLGIGYLP   81 (232)
T ss_pred             EEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEecccCCHhHHHhccEEEec
Confidence            46899999988899999999999999999999999999999999999998 699999999987432   1 235699999


Q ss_pred             CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250          77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ  156 (212)
Q Consensus        77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD  156 (212)
                      |++.+++.+|++||+.+....+.   .........+.++++.+++.+..++.+.+||||||||++|||||+.+|++||||
T Consensus        82 q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD  158 (232)
T cd03218          82 QEASIFRKLTVEENILAVLEIRG---LSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLD  158 (232)
T ss_pred             CCccccccCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence            99999999999999987644321   223344557789999999998899999999999999999999999999999999


Q ss_pred             CCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         157 HDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       157 EPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      |||+ ||+.+++.++++|++++++.     .+|+++.+... +  .+|++|+++..|+++++.
T Consensus       159 EPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  221 (232)
T cd03218         159 EPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIA  221 (232)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence            9999 99999999999999987643     26999877664 3  478899999999988764

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=100.00  E-value=1.1e-49  Score=324.26  Aligned_cols=201  Identities=26%  Similarity=0.358  Sum_probs=173.0

Q ss_pred             CcccccccCC----cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEc
Q psy8250           1 METFHPLFGD----TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVP   76 (212)
Q Consensus         1 ~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~   76 (212)
                      ++++++.|++    +.+|+++||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++..  .++.++|+|
T Consensus         3 ~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~--~~~~i~~v~   79 (220)
T cd03293           3 VRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERP-TSGEVLVDGEPVTG--PGPDRGYVF   79 (220)
T ss_pred             EEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEECcc--ccCcEEEEe
Confidence            4689999987    6899999999999999999999999999999999999988 69999999998753  356799999


Q ss_pred             CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250          77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ  156 (212)
Q Consensus        77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD  156 (212)
                      |++.+++.+|+.||+.+....+   ..........+.++++.+++.+..++++.+||||||||++|||||+.+|+++|||
T Consensus        80 q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLD  156 (220)
T cd03293          80 QQDALLPWLTVLDNVALGLELQ---GVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLD  156 (220)
T ss_pred             cccccccCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence            9999988899999998865432   1233344567889999999998889999999999999999999999999999999


Q ss_pred             CCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHH--hcCeeecCCch
Q psy8250         157 HDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLK--ELGLLKCRPAD  207 (212)
Q Consensus       157 EPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~--~g~~~~~~~~~  207 (212)
                      |||+ ||+.++..++++|+++..+ .     .+|+++++... +  .+|+  +|+++..++.|
T Consensus       157 EPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~  219 (220)
T cd03293         157 EPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEVD  219 (220)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEec
Confidence            9999 9999999999999998653 2     27999887654 3  3677  69988877654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=100.00  E-value=4.4e-50  Score=351.69  Aligned_cols=209  Identities=24%  Similarity=0.331  Sum_probs=181.0

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEcC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQ   77 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~Q   77 (212)
                      ++++++.|+++.+|+++||+|++||+++|+||||||||||||+|+|+++| ++|+|+++|+++..   ...++.+||++|
T Consensus         6 ~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p-~sG~I~l~G~~i~~~~~~~~~~~ig~v~q   84 (402)
T PRK09536          6 VSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTP-TAGTVLVAGDDVEALSARAASRRVASVPQ   84 (402)
T ss_pred             EeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC-CCcEEEECCEEcCcCCHHHHhcceEEEcc
Confidence            46899999999999999999999999999999999999999999999999 69999999998854   234677999999


Q ss_pred             CCCCCCCCCHHHHHHHHHhhhcc-cCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250          78 HDLTVDTLTVHEHMTLMARLKMD-RNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ  156 (212)
Q Consensus        78 ~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD  156 (212)
                      ++.+++.+|++||+.++...+.. .........++++++++.+|+.+..++++.+||||||||++|||||+++|++||||
T Consensus        85 ~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLD  164 (402)
T PRK09536         85 DTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLD  164 (402)
T ss_pred             CCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence            99999999999999885432110 01112344567899999999999999999999999999999999999999999999


Q ss_pred             CCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         157 HDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       157 EPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      |||+ ||+.++.+++++|+++++++     .+|+++.+... +  .+|++|+++++|+++++.
T Consensus       165 EPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~  227 (402)
T PRK09536        165 EPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVL  227 (402)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence            9999 99999999999999998643     27999999764 3  478999999999998753

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=100.00  E-value=8.9e-50  Score=323.86  Aligned_cols=195  Identities=22%  Similarity=0.280  Sum_probs=166.4

Q ss_pred             CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc------cccceE
Q psy8250           1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN------LMVKVS   72 (212)
Q Consensus         1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~------~~~~~i   72 (212)
                      ++++++.|++  +.+|+++||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++...      .+++.+
T Consensus         4 ~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~i   82 (216)
T TIGR00960         4 FEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKP-TRGKIRFNGQDLTRLRGREIPFLRRHI   82 (216)
T ss_pred             EEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEehhhcChhHHHHHHHhc
Confidence            4689999964  4699999999999999999999999999999999999998 699999999987431      135679


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCe
Q psy8250          73 GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSG  152 (212)
Q Consensus        73 ~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~l  152 (212)
                      +|+||++.+++.+|+.||+.+.....   .....+..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++
T Consensus        83 ~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l  159 (216)
T TIGR00960        83 GMVFQDHRLLSDRTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPL  159 (216)
T ss_pred             eEEecCccccccccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            99999999999999999998865432   122334456788999999999889999999999999999999999999999


Q ss_pred             EEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcC
Q psy8250         153 FVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELG  199 (212)
Q Consensus       153 lilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~  199 (212)
                      |||||||+ ||+.++..+.++|+++++++     .+|+.+.+... +  .+|++|+
T Consensus       160 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~  215 (216)
T TIGR00960       160 LLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGR  215 (216)
T ss_pred             EEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence            99999999 99999999999999997643     37999988654 3  3455665

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=100.00  E-value=7.6e-50  Score=329.00  Aligned_cols=209  Identities=26%  Similarity=0.385  Sum_probs=176.6

Q ss_pred             CcccccccCC-cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc------cccceEE
Q psy8250           1 METFHPLFGD-TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN------LMVKVSG   73 (212)
Q Consensus         1 ~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~------~~~~~i~   73 (212)
                      ++++++.|++ +.+++|+||++.+|++++|+||||||||||+++|+|+++| ++|+|+++|+++...      ..++.++
T Consensus         3 ~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~i~   81 (241)
T cd03256           3 VENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEP-TSGSVLIDGTDINKLKGKALRQLRRQIG   81 (241)
T ss_pred             EeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC-CCceEEECCEeccccCHhHHHHHHhccE
Confidence            4689999987 7899999999999999999999999999999999999988 699999999987532      2356799


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHhhh-----cccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhh
Q psy8250          74 FVPQHDLTVDTLTVHEHMTLMARLK-----MDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTII  148 (212)
Q Consensus        74 ~v~Q~~~~~~~ltv~e~l~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~  148 (212)
                      |+||++.+++.+|+.+|+.+.....     .............+.++++.+++.+..++++.+||||||||++|||||+.
T Consensus        82 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~  161 (241)
T cd03256          82 MIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQ  161 (241)
T ss_pred             EEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhc
Confidence            9999999999999999998753210     00011112344567889999999988899999999999999999999999


Q ss_pred             CCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         149 VQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       149 ~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      +|+++||||||+ ||+.++..++++|++++++ +     .+|+++.+... +  .+|++|+++..|+++++.
T Consensus       162 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~  233 (241)
T cd03256         162 QPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT  233 (241)
T ss_pred             CCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence            999999999999 9999999999999998754 2     27999988754 3  478899999999988764

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=100.00  E-value=1.6e-49  Score=325.89  Aligned_cols=206  Identities=23%  Similarity=0.346  Sum_probs=178.5

Q ss_pred             CcccccccCCc----ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc------cccc
Q psy8250           1 METFHPLFGDT----NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN------LMVK   70 (212)
Q Consensus         1 ~~~l~~~~~~~----~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~------~~~~   70 (212)
                      ++++++.|+++    .+++++||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++...      ..++
T Consensus         4 ~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~   82 (233)
T cd03258           4 LKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP-TSGSVLVDGTDLTLLSGKELRKARR   82 (233)
T ss_pred             EecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEEcccCCHHHHHHHHh
Confidence            46899999876    899999999999999999999999999999999999998 699999999987532      1246


Q ss_pred             eEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCC
Q psy8250          71 VSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQ  150 (212)
Q Consensus        71 ~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p  150 (212)
                      .++|+||++.+++.+|+.||+.+....+.   .........+.++++.+++.+..++++.+||||||||++|||||+.+|
T Consensus        83 ~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p  159 (233)
T cd03258          83 RIGMIFQHFNLLSSRTVFENVALPLEIAG---VPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNP  159 (233)
T ss_pred             heEEEccCcccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence            79999999999999999999988654321   233344567889999999998899999999999999999999999999


Q ss_pred             CeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         151 SGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       151 ~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      +++||||||+ ||+.++..++++|++++++ .     .+|+.+.+... +  .+|++|+++..|+++++.
T Consensus       160 ~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  229 (233)
T cd03258         160 KVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVF  229 (233)
T ss_pred             CEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence            9999999999 9999999999999998764 2     27999988664 3  478899999999988764

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=100.00  E-value=1.8e-49  Score=322.38  Aligned_cols=195  Identities=27%  Similarity=0.327  Sum_probs=165.6

Q ss_pred             CcccccccCC----cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccc-------cc
Q psy8250           1 METFHPLFGD----TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL-------MV   69 (212)
Q Consensus         1 ~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~-------~~   69 (212)
                      ++++++.|++    +.+|+++||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++....       .+
T Consensus         3 ~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~~~   81 (218)
T cd03255           3 LKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP-TSGEVRVDGTDISKLSEKELAAFRR   81 (218)
T ss_pred             EeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCC-CceeEEECCEehhhcchhHHHHHHh
Confidence            4689999976    6899999999999999999999999999999999999998 6999999999875321       24


Q ss_pred             ceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhC
Q psy8250          70 KVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIV  149 (212)
Q Consensus        70 ~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~  149 (212)
                      +.++|++|++.+++.+|+.||+.+....+.   .......+.+.++++.+|+.+..++++.+||||||||++|||||+.+
T Consensus        82 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~  158 (218)
T cd03255          82 RHIGFVFQSFNLLPDLTALENVELPLLLAG---VPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALAND  158 (218)
T ss_pred             hcEEEEeeccccCCCCcHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccC
Confidence            579999999999999999999998654321   22333456788999999999888999999999999999999999999


Q ss_pred             CCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHHH--HHHHhcC
Q psy8250         150 QSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTVD--ALLKELG  199 (212)
Q Consensus       150 p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~~--~~l~~g~  199 (212)
                      |++|||||||+ ||+.++..+.++|++++.+ .     .+|+++.+..++  .+|++|+
T Consensus       159 p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~  217 (218)
T cd03255         159 PKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGK  217 (218)
T ss_pred             CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCc
Confidence            99999999999 9999999999999999763 2     279998775222  2455654

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=100.00  E-value=3.4e-49  Score=330.78  Aligned_cols=205  Identities=25%  Similarity=0.345  Sum_probs=176.0

Q ss_pred             cccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---c----ccceEEE
Q psy8250           2 ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---L----MVKVSGF   74 (212)
Q Consensus         2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~----~~~~i~~   74 (212)
                      .++++.|+++.+|+|+||++++|++++|+||||||||||+++|+|+++| ++|+|+++|.++...   .    .++.++|
T Consensus        28 ~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p-~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~  106 (269)
T cd03294          28 EEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEP-TSGKVLIDGQDIAAMSRKELRELRRKKISM  106 (269)
T ss_pred             hhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCeEEEECCEEccccChhhhhhhhcCcEEE
Confidence            4677888888899999999999999999999999999999999999998 699999999987531   1    1357999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEE
Q psy8250          75 VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFV  154 (212)
Q Consensus        75 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~lli  154 (212)
                      +||++.+++.+|+.||+.+.....   .........++.++++.+++.+..++++.+||||||||++|||||+.+|++||
T Consensus       107 v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~ill  183 (269)
T cd03294         107 VFQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILL  183 (269)
T ss_pred             EecCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence            999999999999999998865432   12233445678899999999988999999999999999999999999999999


Q ss_pred             ecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         155 PQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       155 lDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      |||||+ ||+.++..+.++|.+++.+ +     .+|+++.+... +  .+|++|+++..|+++++.
T Consensus       184 LDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  249 (269)
T cd03294         184 MDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEIL  249 (269)
T ss_pred             EcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHH
Confidence            999999 9999999999999998754 2     27999987654 3  467899999999988774

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=100.00  E-value=1.3e-49  Score=325.22  Aligned_cols=205  Identities=23%  Similarity=0.322  Sum_probs=174.3

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCC-----CCCCceEEEECCEeCCcc-----cccc
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRI-----QGDVDGQILLNGLEVEKN-----LMVK   70 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~-----~p~~~G~I~~~g~~~~~~-----~~~~   70 (212)
                      ++++++.|+++.+|+|+||+|++|++++|+||||||||||+++|+|++     +| .+|+|.++|+++...     .+++
T Consensus         3 ~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~-~~G~i~~~g~~~~~~~~~~~~~~~   81 (227)
T cd03260           3 LRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP-DEGEVLLDGKDIYDLDVDVLELRR   81 (227)
T ss_pred             EEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCC-CCeEEEECCEEhhhcchHHHHHHh
Confidence            478999998888999999999999999999999999999999999999     77 699999999987431     2356


Q ss_pred             eEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCC--CCCCChHHHHHHHHHHHHhh
Q psy8250          71 VSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSV--LNVLSGGERKRVALAVQTII  148 (212)
Q Consensus        71 ~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LSgGqrqRv~lA~al~~  148 (212)
                      .++|+||++.++ .+|++||+.+......  .....+...++.++++.+|+.+..++.  +.+||||||||++|||||+.
T Consensus        82 ~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~  158 (227)
T cd03260          82 RVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALAN  158 (227)
T ss_pred             hEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhc
Confidence            799999999888 7899999988654321  111223456788999999998876776  59999999999999999999


Q ss_pred             CCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhh
Q psy8250         149 VQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADEL  209 (212)
Q Consensus       149 ~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~  209 (212)
                      +|++|||||||+ ||+.++..++++|++++.+.    .+|+++.+... +  .+|++|++++.|+++++
T Consensus       159 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  227 (227)
T cd03260         159 EPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI  227 (227)
T ss_pred             CCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence            999999999999 99999999999999997652    27999987654 3  47889999999988764

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=100.00  E-value=3e-49  Score=319.97  Aligned_cols=200  Identities=23%  Similarity=0.290  Sum_probs=172.3

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHD   79 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~   79 (212)
                      ++++++.|+++.+++|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++... ..++.++|++|++
T Consensus         3 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~v~~~g~~~~~~~~~~~~i~~~~q~~   81 (213)
T cd03301           3 LENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEP-TSGRIYIGGRDVTDLPPKDRDIAMVFQNY   81 (213)
T ss_pred             EEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEECCcCCcccceEEEEecCh
Confidence            46899999988899999999999999999999999999999999999988 699999999987532 2245799999999


Q ss_pred             CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCC
Q psy8250          80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDL  159 (212)
Q Consensus        80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt  159 (212)
                      .+++.+|++||+.++....   .....+..+.+.++++.+|+.+..++++.+||||||||++|||||+.+|+++||||||
T Consensus        82 ~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt  158 (213)
T cd03301          82 ALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPL  158 (213)
T ss_pred             hhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence            9988899999998865432   1233445567889999999998899999999999999999999999999999999999


Q ss_pred             C-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecC
Q psy8250         160 T-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCR  204 (212)
Q Consensus       160 ~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~  204 (212)
                      + ||+.++..++++|++++.+ .     .+|+.+.+... +  .+|++|++++.|
T Consensus       159 ~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g  213 (213)
T cd03301         159 SNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG  213 (213)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence            9 9999999999999999764 2     27999887664 3  367788887654

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=100.00  E-value=3.3e-49  Score=327.12  Aligned_cols=208  Identities=25%  Similarity=0.316  Sum_probs=178.2

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-----------ccc
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-----------LMV   69 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-----------~~~   69 (212)
                      ++++++.|+++.+|+|+||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++...           .++
T Consensus         6 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~~~   84 (250)
T PRK11264          6 VKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQP-EAGTIRVGDITIDTARSLSQQKGLIRQLR   84 (250)
T ss_pred             EeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCeEEEECCEEccccccccchhhHHHHhh
Confidence            36899999888899999999999999999999999999999999999988 699999999987421           234


Q ss_pred             ceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhC
Q psy8250          70 KVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIV  149 (212)
Q Consensus        70 ~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~  149 (212)
                      +.++|+||++.+++.+|+.||+.++.....  ..........+.++++.+|+.+..++++.+||||||||++|||||+.+
T Consensus        85 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~  162 (250)
T PRK11264         85 QHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMR  162 (250)
T ss_pred             hhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcC
Confidence            579999999999998999999987543211  123344456788999999999888999999999999999999999999


Q ss_pred             CCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250         150 QSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       150 p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      |++|||||||+ ||+.++..++++|.+++++.     .+|+.+.+... +  .+|++|+++..|+++++.+
T Consensus       163 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  233 (250)
T PRK11264        163 PEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFA  233 (250)
T ss_pred             CCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence            99999999999 99999999999999987643     27999888654 3  4788999999999888643

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=100.00  E-value=4.2e-49  Score=330.15  Aligned_cols=207  Identities=24%  Similarity=0.287  Sum_probs=177.8

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc------cccceEEE
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN------LMVKVSGF   74 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~------~~~~~i~~   74 (212)
                      ++++++.|+++.+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|+++|.++...      ..++.++|
T Consensus        10 ~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~   88 (269)
T PRK11831         10 MRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAP-DHGEILFDGENIPAMSRSRLYTVRKRMSM   88 (269)
T ss_pred             EeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEEccccChhhHHHHhhcEEE
Confidence            46899999888899999999999999999999999999999999999998 699999999987531      13456999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEE
Q psy8250          75 VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFV  154 (212)
Q Consensus        75 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~lli  154 (212)
                      +||++.+++.+|+.||+.+......  ..........+.++++.+|+.+..++++.+||||||||++|||||+.+|++||
T Consensus        89 v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lll  166 (269)
T PRK11831         89 LFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIM  166 (269)
T ss_pred             EecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            9999999999999999987643221  12333445567889999999988999999999999999999999999999999


Q ss_pred             ecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         155 PQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       155 lDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      |||||+ ||+.+++.++++|++++++ .     .+|+++.+... +  .+|++|+++..|+++++.
T Consensus       167 LDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  232 (269)
T PRK11831        167 FDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ  232 (269)
T ss_pred             EcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence            999999 9999999999999998764 2     27999888664 3  367899999999988764

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=100.00  E-value=3.3e-49  Score=319.22  Aligned_cols=198  Identities=23%  Similarity=0.363  Sum_probs=171.2

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL   80 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~   80 (212)
                      ++++++.|+++.+++++||++.+|++++|+||||||||||+++|+|+++| ++|+|+++|.++.. ..++.++|++|++.
T Consensus         3 ~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~-~~~~~i~~~~q~~~   80 (210)
T cd03269           3 VENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILP-DSGEVLFDGKPLDI-AARNRIGYLPEERG   80 (210)
T ss_pred             EEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCCchhH-HHHccEEEeccCCc
Confidence            46899999888899999999999999999999999999999999999988 69999999988753 34567999999999


Q ss_pred             CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC
Q psy8250          81 TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT  160 (212)
Q Consensus        81 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~  160 (212)
                      +++.+|+.||+.+....+   ........+.+.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||+
T Consensus        81 ~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~  157 (210)
T cd03269          81 LYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFS  157 (210)
T ss_pred             CCcCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence            999999999998765432   12334455678899999999988899999999999999999999999999999999999


Q ss_pred             -CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeec
Q psy8250         161 -VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKC  203 (212)
Q Consensus       161 -lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~  203 (212)
                       ||+.++..+.++|++++.++     .+|+.+.+... +  .+|++|++++.
T Consensus       158 ~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~  209 (210)
T cd03269         158 GLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLY  209 (210)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEec
Confidence             99999999999999987543     27999887653 3  36778887654

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.1e-49  Score=324.29  Aligned_cols=201  Identities=21%  Similarity=0.272  Sum_probs=171.6

Q ss_pred             CcccccccCC----cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccc------c-c
Q psy8250           1 METFHPLFGD----TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL------M-V   69 (212)
Q Consensus         1 ~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~------~-~   69 (212)
                      ++++++.|++    ..+|+++||+|++|++++|+||||||||||+++|+|+++| ++|+|+++|+++....      . +
T Consensus         8 ~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~i~~~~~~~~~~~~~   86 (233)
T PRK11629          8 CDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP-TSGDVIFNGQPMSKLSSAAKAELRN   86 (233)
T ss_pred             EEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEEcCcCCHHHHHHHHh
Confidence            4688999964    4699999999999999999999999999999999999988 6999999999875321      1 2


Q ss_pred             ceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhC
Q psy8250          70 KVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIV  149 (212)
Q Consensus        70 ~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~  149 (212)
                      +.++|+||++.+++.+|+.||+.+.....   .....+...++.++++.+|+.+..++++.+||||||||++|||||+.+
T Consensus        87 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~  163 (233)
T PRK11629         87 QKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNN  163 (233)
T ss_pred             ccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence            56999999999999999999998865432   123334456788999999999888999999999999999999999999


Q ss_pred             CCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHHH--HHHHhcCeeecCC
Q psy8250         150 QSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTVD--ALLKELGLLKCRP  205 (212)
Q Consensus       150 p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~~--~~l~~g~~~~~~~  205 (212)
                      |++|||||||+ ||+.++..+.++|++++.+ .     .+|+++.+...+  .+|++|++++.++
T Consensus       164 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~  228 (233)
T PRK11629        164 PRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS  228 (233)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence            99999999999 9999999999999998653 2     279999876654  3677899887765

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.4e-49  Score=327.99  Aligned_cols=209  Identities=26%  Similarity=0.355  Sum_probs=176.0

Q ss_pred             CcccccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc------cccceEE
Q psy8250           1 METFHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN------LMVKVSG   73 (212)
Q Consensus         1 ~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~------~~~~~i~   73 (212)
                      ++++++.|+ ++.+|+++||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++...      .+++.++
T Consensus         4 ~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~i~   82 (243)
T TIGR02315         4 VENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEP-SSGSILLEGTDITKLRGKKLRKLRRRIG   82 (243)
T ss_pred             EEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC-CccEEEECCEEhhhCCHHHHHHHHhheE
Confidence            468999998 77899999999999999999999999999999999999988 699999999987431      2356799


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHhhhc-----ccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhh
Q psy8250          74 FVPQHDLTVDTLTVHEHMTLMARLKM-----DRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTII  148 (212)
Q Consensus        74 ~v~Q~~~~~~~ltv~e~l~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~  148 (212)
                      |+||++.+++.+|+.+|+.+......     ...........++.++++.+++.+..++++.+||||||||++|||||+.
T Consensus        83 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~  162 (243)
T TIGR02315        83 MIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQ  162 (243)
T ss_pred             EEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence            99999999999999999976432100     0001122345678889999999988899999999999999999999999


Q ss_pred             CCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         149 VQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       149 ~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      +|++|||||||+ ||+.++..+.++|++++++ .     .+|+++.+... +  .+|++|+++..|+++++.
T Consensus       163 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~  234 (243)
T TIGR02315       163 QPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSELD  234 (243)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHhC
Confidence            999999999999 9999999999999998654 2     27999988654 3  478899999999988764

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=3.8e-49  Score=325.02  Aligned_cols=207  Identities=24%  Similarity=0.349  Sum_probs=178.2

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-----cccceEEEE
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-----LMVKVSGFV   75 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-----~~~~~i~~v   75 (212)
                      ++++++.|++..+++|+||++++|++++|+||||||||||+++|+|+++| ++|+|+++|.++...     .+++.++|+
T Consensus         4 ~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~i~~~   82 (240)
T PRK09493          4 FKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEI-TSGDLIVDGLKVNDPKVDERLIRQEAGMV   82 (240)
T ss_pred             EEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEECCcCChhHHHHhhceEEE
Confidence            46889999888899999999999999999999999999999999999988 699999999987531     235679999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEe
Q psy8250          76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVP  155 (212)
Q Consensus        76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llil  155 (212)
                      +|++.+++.+|+++|+.+.....  ......+....+.++++.+|+.+..++++.+||+|||||++|||||+.+|+++||
T Consensus        83 ~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll  160 (240)
T PRK09493         83 FQQFYLFPHLTALENVMFGPLRV--RGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLF  160 (240)
T ss_pred             ecccccCCCCcHHHHHHhHHHHh--cCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence            99999999999999998754211  1123344556788999999999888999999999999999999999999999999


Q ss_pred             cCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         156 QHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       156 DEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      ||||+ ||+.++..+.++|+++++++     .+|+++.+... +  .+|++|++++.|+++++.
T Consensus       161 DEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  224 (240)
T PRK09493        161 DEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLI  224 (240)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence            99999 99999999999999987543     27999988654 3  478899999999988764

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=100.00  E-value=4.3e-49  Score=325.20  Aligned_cols=206  Identities=24%  Similarity=0.368  Sum_probs=177.8

Q ss_pred             CcccccccCC-cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEc
Q psy8250           1 METFHPLFGD-TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVP   76 (212)
Q Consensus         1 ~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~   76 (212)
                      ++++++.|++ +.+|+++||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++..   ...++.++|+|
T Consensus         3 ~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~   81 (242)
T cd03295           3 FENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEP-TSGEIFIDGEDIREQDPVELRRKIGYVI   81 (242)
T ss_pred             EEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCeEcCcCChHHhhcceEEEc
Confidence            4689999987 7899999999999999999999999999999999999988 69999999998753   23356799999


Q ss_pred             CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc--ccCCCCCCCChHHHHHHHHHHHHhhCCCeEE
Q psy8250          77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK--CKNSVLNVLSGGERKRVALAVQTIIVQSGFV  154 (212)
Q Consensus        77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~--~~~~~~~~LSgGqrqRv~lA~al~~~p~lli  154 (212)
                      |++.+++.+|+.||+.++....   ..........+.++++.+++.+  ..++++.+||||||||++|||||+.+|++||
T Consensus        82 q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll  158 (242)
T cd03295          82 QQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLL  158 (242)
T ss_pred             cCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            9999999999999998765432   1233444567889999999985  7899999999999999999999999999999


Q ss_pred             ecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         155 PQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       155 lDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      |||||+ ||+.++..+.++|++++.+ .     .+|+.+.+... +  .+|++|+++..|+++++.
T Consensus       159 lDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  224 (242)
T cd03295         159 MDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL  224 (242)
T ss_pred             ecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence            999999 9999999999999999764 2     27999877654 3  478899999999888764

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.3e-49  Score=333.68  Aligned_cols=206  Identities=18%  Similarity=0.273  Sum_probs=176.1

Q ss_pred             CcccccccCC-----cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-----cccc
Q psy8250           1 METFHPLFGD-----TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-----LMVK   70 (212)
Q Consensus         1 ~~~l~~~~~~-----~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-----~~~~   70 (212)
                      ++++++.|++     +.+|+||||+|.+||++||+||||||||||+++|+|+++| ++|+|+++|.++...     .+++
T Consensus         5 ~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~~   83 (287)
T PRK13637          5 IENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKP-TSGKIIIDGVDITDKKVKLSDIRK   83 (287)
T ss_pred             EEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-CccEEEECCEECCCcCccHHHHhh
Confidence            3688999964     4699999999999999999999999999999999999999 699999999998532     3456


Q ss_pred             eEEEEcCCCC-CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc--cccCCCCCCCChHHHHHHHHHHHHh
Q psy8250          71 VSGFVPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL--KCKNSVLNVLSGGERKRVALAVQTI  147 (212)
Q Consensus        71 ~i~~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LSgGqrqRv~lA~al~  147 (212)
                      .+||+||++. .+...||+||+.++....   +....+...++.++++.+|+.  +..++++.+||||||||++|||||+
T Consensus        84 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~  160 (287)
T PRK13637         84 KVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVA  160 (287)
T ss_pred             ceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHH
Confidence            7999999973 334579999999865432   234455667789999999997  6789999999999999999999999


Q ss_pred             hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      .+|++|||||||+ ||+.++..++++|++++++ .     .||+++.+... +  .+|++|+++++|+++++.
T Consensus       161 ~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~  233 (287)
T PRK13637        161 MEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF  233 (287)
T ss_pred             cCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            9999999999999 9999999999999999765 2     27999988654 3  478899999999988863

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=100.00  E-value=3.8e-49  Score=321.14  Aligned_cols=205  Identities=22%  Similarity=0.280  Sum_probs=175.3

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccc----ccceEEEEc
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL----MVKVSGFVP   76 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~----~~~~i~~v~   76 (212)
                      ++++++.|+++.+++++||++.+|++++|+||||||||||+++|+|+++| ++|+|.++|.++....    .++.++|+|
T Consensus         3 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~~i~~~~   81 (222)
T cd03224           3 VENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPP-RSGSIRFDGRDITGLPPHERARAGIGYVP   81 (222)
T ss_pred             EeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEEcCCCCHHHHHhcCeEEec
Confidence            46899999888899999999999999999999999999999999999998 6999999999875321    245699999


Q ss_pred             CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHc-CCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEe
Q psy8250          77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKEL-GLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVP  155 (212)
Q Consensus        77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llil  155 (212)
                      |++.+++.+|++||+.+......     ..+....+.++++.+ ++.+..++++.+||||||||++|||||+.+|++|||
T Consensus        82 q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll  156 (222)
T cd03224          82 EGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLL  156 (222)
T ss_pred             cccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            99999999999999988654321     122344567788888 577788999999999999999999999999999999


Q ss_pred             cCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250         156 QHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       156 DEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      ||||+ ||+.++..++++|++++.+.     .+|+++.+... +  .+|++|+++..|+++++.+
T Consensus       157 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  221 (222)
T cd03224         157 DEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA  221 (222)
T ss_pred             CCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence            99999 99999999999999987543     27999987664 3  4788999999999887753

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=100.00  E-value=4.5e-49  Score=338.51  Aligned_cols=209  Identities=18%  Similarity=0.228  Sum_probs=178.8

Q ss_pred             CcccccccCC-------------cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-
Q psy8250           1 METFHPLFGD-------------TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-   66 (212)
Q Consensus         1 ~~~l~~~~~~-------------~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-   66 (212)
                      ++++++.|+.             ..+++||||+|++||++||+||||||||||+++|+|++.| ++|+|+++|.++... 
T Consensus        11 v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p-~~G~I~~~G~~i~~~~   89 (331)
T PRK15079         11 VADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA-TDGEVAWLGKDLLGMK   89 (331)
T ss_pred             EeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC-CCcEEEECCEECCcCC
Confidence            4688888852             4699999999999999999999999999999999999998 699999999998532 


Q ss_pred             -----cccceEEEEcCCC--CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHH
Q psy8250          67 -----LMVKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERK  138 (212)
Q Consensus        67 -----~~~~~i~~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrq  138 (212)
                           .+++.++||||++  .+++.+|+.+|+.+....+. ......+..+++.++++.+++. ...++++.+|||||+|
T Consensus        90 ~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~-~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~Q  168 (331)
T PRK15079         90 DDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYH-PKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQ  168 (331)
T ss_pred             HHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHH
Confidence                 2356799999998  57889999999988654331 1234455667788999999995 5789999999999999


Q ss_pred             HHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHH-H--HHHHhcCeeecCCchh
Q psy8250         139 RVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR------NLHHVERARTV-D--ALLKELGLLKCRPADE  208 (212)
Q Consensus       139 Rv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~  208 (212)
                      ||+|||||+.+|++||+||||+ ||+.++.+++++|++++++.      .|||++.+... +  .+|++|++++.|++++
T Consensus       169 Rv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~g~~~~  248 (331)
T PRK15079        169 RIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDE  248 (331)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            9999999999999999999999 99999999999999997752      37999998764 2  4789999999999988


Q ss_pred             hhc
Q psy8250         209 LNR  211 (212)
Q Consensus       209 ~~~  211 (212)
                      +.+
T Consensus       249 i~~  251 (331)
T PRK15079        249 VYH  251 (331)
T ss_pred             HHc
Confidence            753

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=100.00  E-value=3.3e-49  Score=320.82  Aligned_cols=200  Identities=22%  Similarity=0.304  Sum_probs=172.1

Q ss_pred             CcccccccCCc----ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc--ccccceEEE
Q psy8250           1 METFHPLFGDT----NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK--NLMVKVSGF   74 (212)
Q Consensus         1 ~~~l~~~~~~~----~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~--~~~~~~i~~   74 (212)
                      ++++++.|++.    .+++++||++++|++++|+||||||||||+++|+|+++| ++|+|.++|+++..  ..+++.++|
T Consensus         4 ~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~i~~   82 (218)
T cd03266           4 ADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEP-DAGFATVDGFDVVKEPAEARRRLGF   82 (218)
T ss_pred             EEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC-CCceEEECCEEcccCHHHHHhhEEE
Confidence            46899999876    799999999999999999999999999999999999988 69999999998753  234567999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEE
Q psy8250          75 VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFV  154 (212)
Q Consensus        75 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~lli  154 (212)
                      +||++.+++.+|+.||+.+....+   .....+...++.++++.+|+.+..++++.+||||||||++|||||+.+|++||
T Consensus        83 ~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ill  159 (218)
T cd03266          83 VSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLL  159 (218)
T ss_pred             ecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEE
Confidence            999999999999999998765432   12334456678899999999988999999999999999999999999999999


Q ss_pred             ecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecC
Q psy8250         155 PQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCR  204 (212)
Q Consensus       155 lDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~  204 (212)
                      |||||+ ||+.++..++++|++++++.     .+|+.+.+... +  .+|++|+++..|
T Consensus       160 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~  218 (218)
T cd03266         160 LDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG  218 (218)
T ss_pred             EcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence            999999 99999999999999997543     37999887654 3  367788876543

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.9e-49  Score=344.35  Aligned_cols=202  Identities=25%  Similarity=0.329  Sum_probs=173.4

Q ss_pred             ccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccc-------ccceEEEEcC
Q psy8250           5 HPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL-------MVKVSGFVPQ   77 (212)
Q Consensus         5 ~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~-------~~~~i~~v~Q   77 (212)
                      .+.|+...+++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|.++....       +++.++|+||
T Consensus        35 ~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p-~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q  113 (400)
T PRK10070         35 LEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEP-TRGQVLIDGVDIAKISDAELREVRRKKIAMVFQ  113 (400)
T ss_pred             HhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC-CCCEEEECCEECCcCCHHHHHHHHhCCEEEEEC
Confidence            3344444489999999999999999999999999999999999999 6999999999985321       2357999999


Q ss_pred             CCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecC
Q psy8250          78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQH  157 (212)
Q Consensus        78 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDE  157 (212)
                      ++.+|+.+|+.||+.+.....   .....+..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++|||||
T Consensus       114 ~~~l~~~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDE  190 (400)
T PRK10070        114 SFALMPHMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDE  190 (400)
T ss_pred             CCcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence            999999999999999876543   22334455678899999999999999999999999999999999999999999999


Q ss_pred             CCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         158 DLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       158 Pt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      ||+ ||+.++..+.++|.+++++ +     .+|+++++... +  .+|++|+++..|+++++.
T Consensus       191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~  253 (400)
T PRK10070        191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEIL  253 (400)
T ss_pred             CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHH
Confidence            999 9999999999999998754 2     37999988664 3  478899999999988874

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=2.8e-49  Score=318.65  Aligned_cols=192  Identities=26%  Similarity=0.303  Sum_probs=163.9

Q ss_pred             CcccccccCC-cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCC
Q psy8250           1 METFHPLFGD-TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHD   79 (212)
Q Consensus         1 ~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~   79 (212)
                      ++++++.|++ +.+|+++||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++.....++.++|+||++
T Consensus         2 ~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~i~~~~q~~   80 (205)
T cd03226           2 IENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKE-SSGSILLNGKPIKAKERRKSIGYVMQDV   80 (205)
T ss_pred             cccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEEhhhHHhhcceEEEecCh
Confidence            5789999987 7899999999999999999999999999999999999998 6999999999875444556799999997


Q ss_pred             C-CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250          80 L-TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD  158 (212)
Q Consensus        80 ~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP  158 (212)
                      . .++.+|+.||+.++....   .    ....++.++++.+++.+..++++.+||||||||++|||||+.+|+++|||||
T Consensus        81 ~~~~~~~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP  153 (205)
T cd03226          81 DYQLFTDSVREELLLGLKEL---D----AGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEP  153 (205)
T ss_pred             hhhhhhccHHHHHhhhhhhc---C----ccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence            4 344679999998754322   1    1124678999999999889999999999999999999999999999999999


Q ss_pred             CC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCe
Q psy8250         159 LT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGL  200 (212)
Q Consensus       159 t~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~  200 (212)
                      |+ ||+.+++.++++|++++++.     .+|+++.+... +  .+|++|++
T Consensus       154 t~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i  204 (205)
T cd03226         154 TSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAI  204 (205)
T ss_pred             CccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence            99 99999999999999996553     37999887653 3  35667765

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=100.00  E-value=5.5e-49  Score=323.42  Aligned_cols=206  Identities=24%  Similarity=0.337  Sum_probs=177.1

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc--cccceEEEEcCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN--LMVKVSGFVPQH   78 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~--~~~~~i~~v~Q~   78 (212)
                      ++++++.|+++.+|+++||+|.+|++++|+||||||||||+++|+|+++| ++|+|.++|.++...  ...+.++|++|+
T Consensus         4 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p-~~G~i~~~g~~i~~~~~~~~~~i~~~~q~   82 (236)
T TIGR03864         4 VAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVA-QEGQISVAGHDLRRAPRAALARLGVVFQQ   82 (236)
T ss_pred             EEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC-CceEEEECCEEcccCChhhhhhEEEeCCC
Confidence            46889999888899999999999999999999999999999999999988 699999999987432  223579999999


Q ss_pred             CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250          79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD  158 (212)
Q Consensus        79 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP  158 (212)
                      +.+++.+|+.+|+.+....+   ..........+.++++.+|+.+..++++.+|||||+||++|||||+.+|+++|||||
T Consensus        83 ~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP  159 (236)
T TIGR03864        83 PTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEP  159 (236)
T ss_pred             CCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            98888999999998765432   123334456788999999999889999999999999999999999999999999999


Q ss_pred             CC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHHH--HHHHhcCeeecCCchhhh
Q psy8250         159 LT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTVD--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       159 t~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~  210 (212)
                      |+ ||+.++..+.++|++++++ .     .+|+++.+..++  .+|++|+++..++++++.
T Consensus       160 ~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  220 (236)
T TIGR03864       160 TVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELR  220 (236)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence            99 9999999999999998753 2     279998876443  478899999999887764

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=100.00  E-value=1.6e-49  Score=306.96  Aligned_cols=204  Identities=26%  Similarity=0.358  Sum_probs=177.9

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHD   79 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~   79 (212)
                      +.++++.|+..+-  .++++|+.||+++|+|||||||||||++|+|+..| .+|+|+++|++.+.. ...+-++++||+.
T Consensus         4 L~~V~~~y~~~~~--~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P-~~G~i~i~g~d~t~~~P~~RPVSmlFQEn   80 (231)
T COG3840           4 LDDVRFSYGHLPM--RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETP-ASGEILINGVDHTASPPAERPVSMLFQEN   80 (231)
T ss_pred             ccceEEeeCcceE--EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCC-CCceEEEcCeecCcCCcccCChhhhhhcc
Confidence            3567778876543  67888999999999999999999999999999999 699999999998754 3456789999999


Q ss_pred             CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCC
Q psy8250          80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDL  159 (212)
Q Consensus        80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt  159 (212)
                      .+|..+||.+|+.++..-..  .+ ..+.+++++.++.++|+..+.++.|.+|||||||||+|||+|+++-+|++|||||
T Consensus        81 NLFaHLtV~qNigLGl~P~L--kL-~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPF  157 (231)
T COG3840          81 NLFAHLTVAQNIGLGLSPGL--KL-NAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPF  157 (231)
T ss_pred             ccchhhhhhhhhcccCCccc--cc-CHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCch
Confidence            99999999999998754211  12 3466778999999999999999999999999999999999999999999999999


Q ss_pred             C-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHHH---HHHHhcCeeecCCchhhh
Q psy8250         160 T-VDTLTVHEHMTLMARLKMDR------NLHHVERARTVD---ALLKELGLLKCRPADELN  210 (212)
Q Consensus       160 ~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~  210 (212)
                      + |||.-+.+++.++..++.+.      +||+.++++...   .++.+|++.+.|+.+++-
T Consensus       158 sALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~  218 (231)
T COG3840         158 SALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELL  218 (231)
T ss_pred             hhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHh
Confidence            9 99999999999999998874      489999987753   478899999999887753

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=2.7e-49  Score=318.01  Aligned_cols=206  Identities=21%  Similarity=0.360  Sum_probs=190.7

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL   80 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~   80 (212)
                      +++++|+||++.+++|+||++++|++.|++|||||||||++|+|.|++.| ++|+|.|+|.+++. ..+.+|||+|.+..
T Consensus         5 ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~-~~G~I~~~g~~~~~-~~~~rIGyLPEERG   82 (300)
T COG4152           5 IEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEP-TEGEITWNGGPLSQ-EIKNRIGYLPEERG   82 (300)
T ss_pred             EecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCc-cCceEEEcCcchhh-hhhhhcccChhhhc
Confidence            47899999999999999999999999999999999999999999999999 69999999999854 34567999999999


Q ss_pred             CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC
Q psy8250          81 TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT  160 (212)
Q Consensus        81 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~  160 (212)
                      +++.+||.|.+.|.+.++   +.+.++.++.+..||+++++.....+++.+||-|++|++.+..|++++|+++|||||||
T Consensus        83 Ly~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFS  159 (300)
T COG4152          83 LYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFS  159 (300)
T ss_pred             cCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCcc
Confidence            999999999999999886   45778889999999999999999999999999999999999999999999999999999


Q ss_pred             -CChhhHHHHHHHHHHHHhhcC-----cchHHHHHHHH---HHHHhcCeeecCCchhhhc
Q psy8250         161 -VDTLTVHEHMTLMARLKMDRN-----LHHVERARTVD---ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       161 -lD~~~~~~~~~~l~~l~~~~~-----~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~~  211 (212)
                       |||.+.+.+.+.+.+++.++.     +|.++.+...+   .+|++|+.+.+|+.+++++
T Consensus       160 GLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~  219 (300)
T COG4152         160 GLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRR  219 (300)
T ss_pred             CCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHH
Confidence             999999999999999998763     69998887643   4788999999999999886

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=100.00  E-value=9.7e-49  Score=323.97  Aligned_cols=206  Identities=20%  Similarity=0.333  Sum_probs=177.2

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCC-----ceEEEECCEeCCc-----ccccc
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDV-----DGQILLNGLEVEK-----NLMVK   70 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~-----~G~I~~~g~~~~~-----~~~~~   70 (212)
                      ++++++.|++..+++|+||+|++||+++|+||||||||||+++|+|+++| +     +|+|.++|+++..     ...++
T Consensus         4 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p-~~~~~~~G~i~~~g~~~~~~~~~~~~~~~   82 (247)
T TIGR00972         4 IENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDL-VPGVRIEGKVLFDGQDIYDKKIDVVELRR   82 (247)
T ss_pred             EEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CcCCCCceEEEECCEEccccccchHHHHh
Confidence            46899999888899999999999999999999999999999999999987 6     9999999998753     12356


Q ss_pred             eEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHH
Q psy8250          71 VSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQT  146 (212)
Q Consensus        71 ~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al  146 (212)
                      .++|+||++.+++ +|++||+.+....+.  .....+....+.++++.+|+.    +..++++.+||||||||++|||||
T Consensus        83 ~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral  159 (247)
T TIGR00972        83 RVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARAL  159 (247)
T ss_pred             heEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHH
Confidence            7999999998888 899999988654321  112344456788999999997    778899999999999999999999


Q ss_pred             hhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         147 IIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       147 ~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      +.+|+++||||||+ ||+.++..++++|+++++..    .+|+++.+... +  .+|++|+++..|+++++.
T Consensus       160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  231 (247)
T TIGR00972       160 AVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF  231 (247)
T ss_pred             hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            99999999999999 99999999999999987642    27999988664 3  478899999999988774

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.7e-49  Score=329.42  Aligned_cols=206  Identities=27%  Similarity=0.284  Sum_probs=176.2

Q ss_pred             CcccccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEEEc
Q psy8250           1 METFHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGFVP   76 (212)
Q Consensus         1 ~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~v~   76 (212)
                      ++++++.|+ +..+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|+++|.++...   .+++.++|+|
T Consensus         7 ~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~i~~v~   85 (274)
T PRK13647          7 VEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLP-QRGRVKVMGREVNAENEKWVRSKVGLVF   85 (274)
T ss_pred             EEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-CceEEEECCEECCCCCHHHHHhhEEEEe
Confidence            468999995 56799999999999999999999999999999999999998 699999999988532   2356799999


Q ss_pred             CCCC-CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEe
Q psy8250          77 QHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVP  155 (212)
Q Consensus        77 Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llil  155 (212)
                      |++. .++..|+.+|+.++....   .........++.++++.+|+.+..++++.+||||||||++|||||+.+|++|||
T Consensus        86 q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llll  162 (274)
T PRK13647         86 QDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVL  162 (274)
T ss_pred             cChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            9973 445679999998764422   233444556788999999999889999999999999999999999999999999


Q ss_pred             cCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         156 QHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       156 DEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      ||||+ ||+.++..++++|++++.++     .||+++.+..+ +  .+|++|++++.|+++++.
T Consensus       163 DEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  226 (274)
T PRK13647        163 DEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT  226 (274)
T ss_pred             ECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence            99999 99999999999999997643     27999988654 3  478999999999987653

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=4.1e-49  Score=315.32  Aligned_cols=206  Identities=22%  Similarity=0.293  Sum_probs=176.8

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc----cccceEEEEc
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN----LMVKVSGFVP   76 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~----~~~~~i~~v~   76 (212)
                      +++++.+||..++|++|||++++||+++|+||||||||||||+|+|+.++ .+|+|.++|++++..    ..+.-++|||
T Consensus         6 v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~-~~G~I~~~G~dit~~p~~~r~r~Gi~~VP   84 (237)
T COG0410           6 VENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRP-RSGRIIFDGEDITGLPPHERARLGIAYVP   84 (237)
T ss_pred             EEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeeEEECCeecCCCCHHHHHhCCeEeCc
Confidence            46899999999999999999999999999999999999999999999998 699999999999753    2456699999


Q ss_pred             CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHc-CCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEe
Q psy8250          77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKEL-GLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVP  155 (212)
Q Consensus        77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llil  155 (212)
                      |...+|+.+||+||+.++......    +.......+++.+.| .|.+..+++.++|||||||.++|||||+.+|++|+|
T Consensus        85 egR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLL  160 (237)
T COG0410          85 EGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLL  160 (237)
T ss_pred             ccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEe
Confidence            999999999999999987654321    111122267778887 467888999999999999999999999999999999


Q ss_pred             cCCCC-CChhhHHHHHHHHHHHHhhcC------cchHHHHHHH---HHHHHhcCeeecCCchhhhc
Q psy8250         156 QHDLT-VDTLTVHEHMTLMARLKMDRN------LHHVERARTV---DALLKELGLLKCRPADELNR  211 (212)
Q Consensus       156 DEPt~-lD~~~~~~~~~~l~~l~~~~~------~h~~~~~~~~---~~~l~~g~~~~~~~~~~~~~  211 (212)
                      |||+. |-|.-.++|++.|++++++..      ..+...|...   ..+|.+|+++..|+++++..
T Consensus       161 DEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~  226 (237)
T COG0410         161 DEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLA  226 (237)
T ss_pred             cCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhc
Confidence            99999 999999999999999997632      3666666554   25899999999999998753

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=9e-50  Score=330.86  Aligned_cols=196  Identities=24%  Similarity=0.288  Sum_probs=179.0

Q ss_pred             cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-------cccceEEEEcCCCCCCC
Q psy8250          11 TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-------LMVKVSGFVPQHDLTVD   83 (212)
Q Consensus        11 ~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-------~~~~~i~~v~Q~~~~~~   83 (212)
                      ...++|+||+++.||+++|+|-||||||||+|++++++.| ++|+|.++|.++...       .+++.+++|||+..++|
T Consensus        41 vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiep-t~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlP  119 (386)
T COG4175          41 VVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEP-TRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLP  119 (386)
T ss_pred             EEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCC-CCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhcccc
Confidence            3468999999999999999999999999999999999999 699999999998531       24567999999999999


Q ss_pred             CCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CC
Q psy8250          84 TLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VD  162 (212)
Q Consensus        84 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD  162 (212)
                      +.||.||+.|+....   +.++++.++++.++++.+||..+.+++|++|||||||||.|||||+.+|+|||+||||| ||
T Consensus       120 hrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALD  196 (386)
T COG4175         120 HRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALD  196 (386)
T ss_pred             chhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcC
Confidence            999999999998765   56788999999999999999999999999999999999999999999999999999999 99


Q ss_pred             hhhHHHHHHHHHHHHhhc------CcchHHHHHHH---HHHHHhcCeeecCCchhhh
Q psy8250         163 TLTVHEHMTLMARLKMDR------NLHHVERARTV---DALLKELGLLKCRPADELN  210 (212)
Q Consensus       163 ~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~---~~~l~~g~~~~~~~~~~~~  210 (212)
                      |.-+.++.+.|.+++.+.      .|||+++|...   ..+|++|+++.+|+|+||-
T Consensus       197 PLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl  253 (386)
T COG4175         197 PLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEIL  253 (386)
T ss_pred             hHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHH
Confidence            999999999888887763      38999999764   4689999999999999985

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-48  Score=322.40  Aligned_cols=207  Identities=20%  Similarity=0.338  Sum_probs=177.8

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc----cccceEEEEc
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN----LMVKVSGFVP   76 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~----~~~~~i~~v~   76 (212)
                      ++++++.|+++.+|+|+||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++...    ..++.++|+|
T Consensus         6 ~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~i~~~~   84 (241)
T PRK10895          6 AKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPR-DAGNIIIDDEDISLLPLHARARRGIGYLP   84 (241)
T ss_pred             EeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEECCCCCHHHHHHhCeEEec
Confidence            46899999888899999999999999999999999999999999999998 699999999987532    1345799999


Q ss_pred             CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250          77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ  156 (212)
Q Consensus        77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD  156 (212)
                      |++.+++.+|+.||+.+......  .....+....+.++++.+++.+..++++.+|||||+||++|||||+.+|++||||
T Consensus        85 q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD  162 (241)
T PRK10895         85 QEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLD  162 (241)
T ss_pred             cCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            99999999999999987543221  1223344567889999999998889999999999999999999999999999999


Q ss_pred             CCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         157 HDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       157 EPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      |||+ ||+.++..+.+++++++.++     .+|+.+.+... +  .+|++|++++.|+++++.
T Consensus       163 EPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~  225 (241)
T PRK10895        163 EPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEIL  225 (241)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHh
Confidence            9999 99999999999999987643     27999877654 3  468899999999988764

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.2e-49  Score=334.01  Aligned_cols=207  Identities=18%  Similarity=0.222  Sum_probs=175.0

Q ss_pred             CcccccccCCc-----ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc----------
Q psy8250           1 METFHPLFGDT-----NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK----------   65 (212)
Q Consensus         1 ~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~----------   65 (212)
                      ++++++.|++.     .+|+||||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|.+...          
T Consensus         5 ~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~~   83 (305)
T PRK13651          5 VKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLP-DTGTIEWIFKDEKNKKKTKEKEKV   83 (305)
T ss_pred             EEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-CCcEEEEeceeccccccccccccc
Confidence            36899999643     599999999999999999999999999999999999998 69999999876421          


Q ss_pred             -----------------ccccceEEEEcCCC-CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccC
Q psy8250          66 -----------------NLMVKVSGFVPQHD-LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKN  126 (212)
Q Consensus        66 -----------------~~~~~~i~~v~Q~~-~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~  126 (212)
                                       ..+++.+||+||++ ..++..||+||+.|+....   +.+..+...++.++++.+|+. +..+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~  160 (305)
T PRK13651         84 LEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYIELVGLDESYLQ  160 (305)
T ss_pred             ccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhh
Confidence                             12456799999986 2344579999999865432   234555667889999999996 6889


Q ss_pred             CCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHh
Q psy8250         127 SVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKE  197 (212)
Q Consensus       127 ~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~  197 (212)
                      +++.+||||||||++|||||+.+|++|||||||+ ||+.++..++++|++++++.     .+||++.+... +  .+|++
T Consensus       161 ~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~  240 (305)
T PRK13651        161 RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKD  240 (305)
T ss_pred             CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEEC
Confidence            9999999999999999999999999999999999 99999999999999997643     27999987654 3  47889


Q ss_pred             cCeeecCCchhhhc
Q psy8250         198 LGLLKCRPADELNR  211 (212)
Q Consensus       198 g~~~~~~~~~~~~~  211 (212)
                      |++++.|+++++.+
T Consensus       241 G~i~~~g~~~~~~~  254 (305)
T PRK13651        241 GKIIKDGDTYDILS  254 (305)
T ss_pred             CEEEEECCHHHHhc
Confidence            99999999988653

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.6e-49  Score=331.58  Aligned_cols=205  Identities=20%  Similarity=0.226  Sum_probs=174.7

Q ss_pred             CcccccccCC-----cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc-------ccc
Q psy8250           1 METFHPLFGD-----TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-------NLM   68 (212)
Q Consensus         1 ~~~l~~~~~~-----~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~-------~~~   68 (212)
                      ++++++.|++     ..+|+||||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++..       ...
T Consensus         5 ~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~~~~~~~~   83 (290)
T PRK13634          5 FQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQP-TSGTVTIGERVITAGKKNKKLKPL   83 (290)
T ss_pred             EEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCcEEEECCEECccccccchHHHH
Confidence            3689999964     4699999999999999999999999999999999999998 69999999998842       124


Q ss_pred             cceEEEEcCCC--CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHH
Q psy8250          69 VKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQ  145 (212)
Q Consensus        69 ~~~i~~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~a  145 (212)
                      ++.+||+||++  .++ ..||+||+.++....   .....+..+++.++++.+||. ...++++.+||||||||++||||
T Consensus        84 ~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAra  159 (290)
T PRK13634         84 RKKVGIVFQFPEHQLF-EETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGV  159 (290)
T ss_pred             HhhEEEEeeCchhhhh-hhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHH
Confidence            56799999987  344 569999999865432   223445556789999999996 66799999999999999999999


Q ss_pred             HhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         146 TIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       146 l~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      |+.+|++|||||||+ ||+.++..++++|++++++ .     .+|+++.+... +  .+|++|+++++|+++++.
T Consensus       160 L~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~  234 (290)
T PRK13634        160 LAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIF  234 (290)
T ss_pred             HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence            999999999999999 9999999999999999765 2     27999988664 3  478899999999988864

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=100.00  E-value=7.6e-49  Score=316.66  Aligned_cols=196  Identities=21%  Similarity=0.320  Sum_probs=169.5

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc-ccccceEEEEcCCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-NLMVKVSGFVPQHD   79 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~-~~~~~~i~~v~Q~~   79 (212)
                      ++++++.|++..+|+++||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++.. ...++.++|+||++
T Consensus         3 ~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~i~~~~q~~   81 (208)
T cd03268           3 TNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKP-DSGEITFDGKSYQKNIEALRRIGALIEAP   81 (208)
T ss_pred             EEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC-CceEEEECCCcccchHHHHhhEEEecCCC
Confidence            46899999888899999999999999999999999999999999999988 69999999988743 23356799999999


Q ss_pred             CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCC
Q psy8250          80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDL  159 (212)
Q Consensus        80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt  159 (212)
                      .+++.+|+.||+.++...+.   .    ...++.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||
T Consensus        82 ~~~~~~tv~e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt  154 (208)
T cd03268          82 GFYPNLTARENLRLLARLLG---I----RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPT  154 (208)
T ss_pred             ccCccCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence            99999999999988654321   1    2345788999999998899999999999999999999999999999999999


Q ss_pred             C-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecC
Q psy8250         160 T-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCR  204 (212)
Q Consensus       160 ~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~  204 (212)
                      + ||+.++..++++|++++++.     .+|+.+.+... +  .+|++|++++.|
T Consensus       155 ~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g  208 (208)
T cd03268         155 NGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG  208 (208)
T ss_pred             ccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence            9 99999999999999987643     37999988654 3  467888877654

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.2e-49  Score=307.55  Aligned_cols=207  Identities=24%  Similarity=0.340  Sum_probs=184.7

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc-------------c-
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-------------N-   66 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~-------------~-   66 (212)
                      +++++|+||...+|++||++..+|+++.|||.|||||||+|+||+-+..| ..|+|.++|.++..             . 
T Consensus         9 v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P-~~G~I~v~geei~~k~~~~G~l~~ad~~q   87 (256)
T COG4598           9 VEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP-SAGSIRVNGEEIRLKRDKDGQLKPADKRQ   87 (256)
T ss_pred             hhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCC-CCceEEECCeEEEeeeCCCCCeeeCCHHH
Confidence            36899999999999999999999999999999999999999999988888 69999999988731             0 


Q ss_pred             --cccceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHH
Q psy8250          67 --LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAV  144 (212)
Q Consensus        67 --~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~  144 (212)
                        .++...++|||+..++..|||.||+..... +. .+.++.+..++++.+|.++|+.+..+.+|..|||||+||++|||
T Consensus        88 ~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPv-hV-Lg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIAR  165 (256)
T COG4598          88 LQRLRTRLGMVFQHFNLWSHMTVLENVIEAPV-HV-LGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIAR  165 (256)
T ss_pred             HHHHHHHhhHhhhhcchhHHHHHHHHHHhcch-Hh-hcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHH
Confidence              134457999999999999999999876442 11 24567888899999999999999999999999999999999999


Q ss_pred             HHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHHH---HHHHhcCeeecCCchhhh
Q psy8250         145 QTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTVD---ALLKELGLLKCRPADELN  210 (212)
Q Consensus       145 al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~  210 (212)
                      ||+.+|+++++||||| |||.-.-+++..++.+++++     +||.+.++++..   .++++|.+-.+|+|+++-
T Consensus       166 aLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P~qvf  240 (256)
T COG4598         166 ALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVF  240 (256)
T ss_pred             HHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccCChHHHh
Confidence            9999999999999999 99999999999999999885     389999998853   589999999999999873

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=100.00  E-value=7.9e-49  Score=317.24  Aligned_cols=199  Identities=26%  Similarity=0.360  Sum_probs=170.9

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc--cccceEEEEcCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN--LMVKVSGFVPQH   78 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~--~~~~~i~~v~Q~   78 (212)
                      ++++++.|++..+++|+||++++| +++|+||||||||||+++|+|+++| ++|+|.++|.++...  ..++.++|++|+
T Consensus         3 ~~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~i~~~~q~   80 (211)
T cd03264           3 LENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPP-SSGTIRIDGQDVLKQPQKLRRRIGYLPQE   80 (211)
T ss_pred             EEEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCC-CccEEEECCCccccchHHHHhheEEecCC
Confidence            468999998888999999999999 9999999999999999999999998 699999999887432  245679999999


Q ss_pred             CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250          79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD  158 (212)
Q Consensus        79 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP  158 (212)
                      +.+++.+|+.||+.+......   ....+....+.++++.+++.+..++++.+||||||||++|||||+.+|+++|||||
T Consensus        81 ~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP  157 (211)
T cd03264          81 FGVYPNFTVREFLDYIAWLKG---IPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEP  157 (211)
T ss_pred             CcccccCCHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            999999999999988654431   22333456788999999999888999999999999999999999999999999999


Q ss_pred             CC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecC
Q psy8250         159 LT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCR  204 (212)
Q Consensus       159 t~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~  204 (212)
                      |+ ||+.++..+.++|++++++.    .+|+++.+... +  .+|++|++++.|
T Consensus       158 t~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g  211 (211)
T cd03264         158 TAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG  211 (211)
T ss_pred             cccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence            99 99999999999999997543    27999988654 3  467888887654

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=100.00  E-value=1.9e-48  Score=315.50  Aligned_cols=194  Identities=26%  Similarity=0.336  Sum_probs=165.5

Q ss_pred             Cccccccc-CCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc------cccceEE
Q psy8250           1 METFHPLF-GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN------LMVKVSG   73 (212)
Q Consensus         1 ~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~------~~~~~i~   73 (212)
                      ++++++.| +++.+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|+++|.++...      .+++.++
T Consensus         4 ~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~i~   82 (214)
T TIGR02673         4 FHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTP-SRGQVRIAGEDVNRLRGRQLPLLRRRIG   82 (214)
T ss_pred             EEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEEcccCCHHHHHHHHhheE
Confidence            46899999 467899999999999999999999999999999999999988 699999999987532      2356799


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeE
Q psy8250          74 FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGF  153 (212)
Q Consensus        74 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~ll  153 (212)
                      |++|++.+++.+|+.||+.+.....   ..........+.++++.+++.+..++.+.+||||||||++|||||+.+|+++
T Consensus        83 ~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll  159 (214)
T TIGR02673        83 VVFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLL  159 (214)
T ss_pred             EEecChhhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEE
Confidence            9999999999999999998865432   1223344567889999999998889999999999999999999999999999


Q ss_pred             EecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhc
Q psy8250         154 VPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKEL  198 (212)
Q Consensus       154 ilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g  198 (212)
                      ||||||+ ||+.++..+.++|++++++.     .+|+++++... +  .+|++|
T Consensus       160 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G  213 (214)
T TIGR02673       160 LADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDG  213 (214)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCC
Confidence            9999999 99999999999999987543     37999888653 3  245454

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=100.00  E-value=1.5e-48  Score=317.60  Aligned_cols=196  Identities=26%  Similarity=0.324  Sum_probs=165.5

Q ss_pred             CcccccccCC----cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccc------cc-
Q psy8250           1 METFHPLFGD----TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL------MV-   69 (212)
Q Consensus         1 ~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~------~~-   69 (212)
                      ++++++.|++    ..+++++||++++|++++|+||||||||||+++|+|+++| ++|+|+++|.++....      ++ 
T Consensus         4 ~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~   82 (221)
T TIGR02211         4 CENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP-TSGEVLFNGQSLSKLSSNERAKLRN   82 (221)
T ss_pred             EEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEEhhhcCHhHHHHHHH
Confidence            4688999964    4699999999999999999999999999999999999998 6999999999875321      12 


Q ss_pred             ceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhC
Q psy8250          70 KVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIV  149 (212)
Q Consensus        70 ~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~  149 (212)
                      +.++|++|++.+++.+|++||+.+....+   .....+....+.++++.+|+.+..++++.+||||||||++|||||+.+
T Consensus        83 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~  159 (221)
T TIGR02211        83 KKLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQ  159 (221)
T ss_pred             hcEEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCC
Confidence            56999999999998999999998865432   122333455678999999999888999999999999999999999999


Q ss_pred             CCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHHH--HHHHhcCe
Q psy8250         150 QSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTVD--ALLKELGL  200 (212)
Q Consensus       150 p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~~--~~l~~g~~  200 (212)
                      |++|||||||+ ||+.++..+.++|++++++ .     .+|+++.+..++  .+|++|++
T Consensus       160 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i  219 (221)
T TIGR02211       160 PSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQL  219 (221)
T ss_pred             CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEe
Confidence            99999999999 9999999999999999754 2     379998775443  35666665

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.8e-48  Score=329.20  Aligned_cols=206  Identities=21%  Similarity=0.242  Sum_probs=174.4

Q ss_pred             CcccccccCC-----cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc-------ccc
Q psy8250           1 METFHPLFGD-----TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-------NLM   68 (212)
Q Consensus         1 ~~~l~~~~~~-----~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~-------~~~   68 (212)
                      ++++++.|++     +.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++..       ...
T Consensus         5 ~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~~   83 (287)
T PRK13641          5 FENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKP-SSGTITIAGYHITPETGNKNLKKL   83 (287)
T ss_pred             EEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEECCEECccccccchHHHH
Confidence            3789999974     4699999999999999999999999999999999999999 69999999998742       123


Q ss_pred             cceEEEEcCCCC-CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHHH
Q psy8250          69 VKVSGFVPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQT  146 (212)
Q Consensus        69 ~~~i~~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~al  146 (212)
                      ++.++|+||++. .+..+|+.||+.++...+   .....+...++.++++.+|+. ...++++.+||||||||++|||||
T Consensus        84 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral  160 (287)
T PRK13641         84 RKKVSLVFQFPEAQLFENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVM  160 (287)
T ss_pred             HhceEEEEeChhhhhccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHH
Confidence            457999999973 233579999998765432   123445566789999999997 688999999999999999999999


Q ss_pred             hhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         147 IIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       147 ~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      +.+|++|||||||+ ||+.++..+.++|++++++.     .+|+++.+... +  .+|++|++++.|+++++.
T Consensus       161 ~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  233 (287)
T PRK13641        161 AYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIF  233 (287)
T ss_pred             HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            99999999999999 99999999999999997543     27999988664 3  478899999999988764

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1e-48  Score=329.46  Aligned_cols=206  Identities=20%  Similarity=0.263  Sum_probs=177.1

Q ss_pred             CcccccccCC---cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEE
Q psy8250           1 METFHPLFGD---TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGF   74 (212)
Q Consensus         1 ~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~   74 (212)
                      ++++++.|++   ..+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|+++|.++...   ..++.++|
T Consensus         7 ~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~~~~~~~i~~   85 (279)
T PRK13650          7 VKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEA-ESGQIIIDGDLLTEENVWDIRHKIGM   85 (279)
T ss_pred             EEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEECCEECCcCcHHHHHhhceE
Confidence            4689999964   4599999999999999999999999999999999999999 699999999988532   34567999


Q ss_pred             EcCCCC-CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeE
Q psy8250          75 VPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGF  153 (212)
Q Consensus        75 v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~ll  153 (212)
                      +||++. .++..||.||+.++....   +....+..+++.++++.+|+.+..++.+.+||||||||++|||||+.+|++|
T Consensus        86 v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lL  162 (279)
T PRK13650         86 VFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKII  162 (279)
T ss_pred             EEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            999974 677789999998865432   2344455667899999999999999999999999999999999999999999


Q ss_pred             EecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHHH--HHHHhcCeeecCCchhhh
Q psy8250         154 VPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTVD--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       154 ilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~  210 (212)
                      ||||||+ ||+.++..++++|++++++ +     .+|+++.+..++  .+|++|+++.+|+++++.
T Consensus       163 lLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~  228 (279)
T PRK13650        163 ILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELF  228 (279)
T ss_pred             EEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            9999999 9999999999999999765 3     279998875433  478899999999988764

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=100.00  E-value=3.2e-48  Score=322.70  Aligned_cols=207  Identities=23%  Similarity=0.309  Sum_probs=177.1

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---------------
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---------------   65 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---------------   65 (212)
                      ++++++.|+++.+++|+||+|++|++++|+||||||||||+++|+|+++| ++|+|+++|.++..               
T Consensus         8 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~~~   86 (257)
T PRK10619          8 VIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP-SEGSIVVNGQTINLVRDKDGQLKVADKNQ   86 (257)
T ss_pred             EeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEEcccccccccccccccchH
Confidence            47899999988899999999999999999999999999999999999988 69999999988742               


Q ss_pred             -ccccceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcccc-CCCCCCCChHHHHHHHHH
Q psy8250          66 -NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCK-NSVLNVLSGGERKRVALA  143 (212)
Q Consensus        66 -~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LSgGqrqRv~lA  143 (212)
                       ..+++.++|+||++.+++.+|++||+.++.....  .....+...++.++++.+|+.+.. ++++.+||||||||++||
T Consensus        87 ~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~la  164 (257)
T PRK10619         87 LRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIA  164 (257)
T ss_pred             HHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHH
Confidence             1234679999999999999999999987442111  123344566788999999998764 888999999999999999


Q ss_pred             HHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         144 VQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       144 ~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      |||+.+|+++||||||+ ||+.+++.+.++|++++++.     .+|+.+.+... +  .+|++|++++.|+++++.
T Consensus       165 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  240 (257)
T PRK10619        165 RALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLF  240 (257)
T ss_pred             HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhh
Confidence            99999999999999999 99999999999999997643     27999988764 3  478899999999988764

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2e-48  Score=329.09  Aligned_cols=206  Identities=20%  Similarity=0.257  Sum_probs=175.8

Q ss_pred             CcccccccCC-----cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc-------ccc
Q psy8250           1 METFHPLFGD-----TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-------NLM   68 (212)
Q Consensus         1 ~~~l~~~~~~-----~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~-------~~~   68 (212)
                      ++++++.|+.     +.+|+||||+|.+|++++|+||||||||||+++|+|+++| ++|+|+++|.++..       ...
T Consensus         4 ~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~~~~~~~~   82 (288)
T PRK13643          4 FEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQP-TEGKVTVGDIVVSSTSKQKEIKPV   82 (288)
T ss_pred             EEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCC-CCcEEEECCEECccccccccHHHH
Confidence            4688999963     2599999999999999999999999999999999999999 69999999998742       124


Q ss_pred             cceEEEEcCCC--CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHH
Q psy8250          69 VKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQ  145 (212)
Q Consensus        69 ~~~i~~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~a  145 (212)
                      ++.+||+||++  .+++ .|+.+|+.|+....   +.+..+...++.++++.+++. ...++.+.+||||||||++||||
T Consensus        83 ~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~a  158 (288)
T PRK13643         83 RKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGI  158 (288)
T ss_pred             HhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHH
Confidence            56799999987  4554 59999999875432   234455667889999999996 57899999999999999999999


Q ss_pred             HhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250         146 TIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       146 l~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      |+.+|++|||||||+ ||+.++..++++|+++++++     .|||++.+... +  .+|++|+++++|+++++.+
T Consensus       159 L~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~  233 (288)
T PRK13643        159 LAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ  233 (288)
T ss_pred             HHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence            999999999999999 99999999999999997643     27999988653 3  4789999999999998753

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.1e-48  Score=338.84  Aligned_cols=204  Identities=21%  Similarity=0.254  Sum_probs=178.0

Q ss_pred             ccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCE----eCCcc---c----ccce
Q psy8250           3 TFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGL----EVEKN---L----MVKV   71 (212)
Q Consensus         3 ~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~----~~~~~---~----~~~~   71 (212)
                      ++.+.|+...+++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+    ++...   .    .++.
T Consensus        29 ~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p-~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~  107 (382)
T TIGR03415        29 EILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPV-SRGSVLVKDGDGSIDVANCDAATLRRLRTHR  107 (382)
T ss_pred             HHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-CCcEEEECCEecccccccCCHHHHHHHhcCC
Confidence            456789999999999999999999999999999999999999999998 6999999996    33221   1    1257


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCC
Q psy8250          72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQS  151 (212)
Q Consensus        72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~  151 (212)
                      ++|+||++.+++.+|+.||+.++....   +.+..+...++.++++.+|+.+..++++.+||||||||++|||||+.+|+
T Consensus       108 i~~vfQ~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~  184 (382)
T TIGR03415       108 VSMVFQKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDAD  184 (382)
T ss_pred             EEEEECCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999876432   23445566788999999999999999999999999999999999999999


Q ss_pred             eEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         152 GFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       152 llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      +|||||||+ ||+.++..+.+.|.+++.+ +     .|||++++... +  .+|++|+++..|+++++.
T Consensus       185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~  253 (382)
T TIGR03415       185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIV  253 (382)
T ss_pred             EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence            999999999 9999999999999999765 2     27999998664 3  578999999999998874

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=100.00  E-value=2.9e-48  Score=320.01  Aligned_cols=209  Identities=20%  Similarity=0.290  Sum_probs=177.5

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccc----ccceEEEEc
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL----MVKVSGFVP   76 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~----~~~~i~~v~   76 (212)
                      ++++++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++....    .++.++|+|
T Consensus         5 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p-~~G~i~~~g~~~~~~~~~~~~~~~i~~~~   83 (242)
T TIGR03411         5 LEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRP-DEGSVLFGGTDLTGLPEHQIARAGIGRKF   83 (242)
T ss_pred             EEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCCeEEECCeecCCCCHHHHHhcCeeEec
Confidence            46899999888899999999999999999999999999999999999998 6999999999874321    234699999


Q ss_pred             CCCCCCCCCCHHHHHHHHHhhhcc-----cCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCC
Q psy8250          77 QHDLTVDTLTVHEHMTLMARLKMD-----RNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQS  151 (212)
Q Consensus        77 Q~~~~~~~ltv~e~l~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~  151 (212)
                      |++.+++.+|+.||+.++......     ..........++.++++.+|+.+..++++.+|||||+||++|||||+.+|+
T Consensus        84 q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~  163 (242)
T TIGR03411        84 QKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPK  163 (242)
T ss_pred             cccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            999999999999999885431100     001123345678899999999988899999999999999999999999999


Q ss_pred             eEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         152 GFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       152 llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      +|||||||+ ||+.++..++++|++++...    .+|+++.+... +  .++++|+++..|+++++.
T Consensus       164 ~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~  230 (242)
T TIGR03411       164 LLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQ  230 (242)
T ss_pred             EEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHh
Confidence            999999999 99999999999999997632    37999988764 3  478899999999988764

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.3e-48  Score=321.68  Aligned_cols=208  Identities=24%  Similarity=0.286  Sum_probs=178.2

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc--------------
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN--------------   66 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~--------------   66 (212)
                      ++++++.|++..+++|+||+|++|++++|+||||||||||+++|+|++.| ++|+|.++|.++...              
T Consensus         3 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~i~~~~~~~~~~~~~~~~~   81 (252)
T TIGR03005         3 FSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPI-DEGQIQVEGEQLYHMPGRNGPLVPADEKH   81 (252)
T ss_pred             EEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEccccccccccccccchhH
Confidence            47899999888899999999999999999999999999999999999998 699999999887421              


Q ss_pred             --cccceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHH
Q psy8250          67 --LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAV  144 (212)
Q Consensus        67 --~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~  144 (212)
                        .+++.++|++|++.+++..|+.||+.+.....  ...........+.++++.+|+.+..++.+.+|||||+||++|||
T Consensus        82 ~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lar  159 (252)
T TIGR03005        82 LRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIAR  159 (252)
T ss_pred             HHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHH
Confidence              23567999999999999999999998753211  11233344567889999999998899999999999999999999


Q ss_pred             HHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250         145 QTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       145 al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      ||+.+|+++||||||+ ||+.++..++++|+++.++ .     .+|+++.+... +  .+|++|+++..|+++++.+
T Consensus       160 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  236 (252)
T TIGR03005       160 ALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFR  236 (252)
T ss_pred             HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence            9999999999999999 9999999999999998764 2     27999887553 3  4788999999999888753

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.4e-48  Score=332.67  Aligned_cols=208  Identities=18%  Similarity=0.231  Sum_probs=178.6

Q ss_pred             CcccccccC----------CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc----
Q psy8250           1 METFHPLFG----------DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN----   66 (212)
Q Consensus         1 ~~~l~~~~~----------~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~----   66 (212)
                      ++++++.|+          ...+++||||+|++||++||+||||||||||+++|+|++.| ++|+|.++|+++...    
T Consensus         8 v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p-~~G~i~~~g~~l~~~~~~~   86 (327)
T PRK11308          8 AIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP-TGGELYYQGQDLLKADPEA   86 (327)
T ss_pred             EeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC-CCcEEEECCEEcCcCCHHH
Confidence            468888885          24699999999999999999999999999999999999988 699999999998532    


Q ss_pred             --cccceEEEEcCCC--CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHH
Q psy8250          67 --LMVKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVA  141 (212)
Q Consensus        67 --~~~~~i~~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~  141 (212)
                        .+++.++||||++  .+++.+|+.+++......+.  .....+...++.++++.+|+. ...++++.+|||||+||++
T Consensus        87 ~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~  164 (327)
T PRK11308         87 QKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIA  164 (327)
T ss_pred             HHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHH
Confidence              2356799999998  57888999999887654431  234455667889999999996 4679999999999999999


Q ss_pred             HHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH---HHHHHhcCeeecCCchhhhc
Q psy8250         142 LAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV---DALLKELGLLKCRPADELNR  211 (212)
Q Consensus       142 lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~---~~~l~~g~~~~~~~~~~~~~  211 (212)
                      |||||+.+|++||+||||+ ||+.++.+++++|++++++ .     +|||++.+...   ..+|++|++++.|+++++.+
T Consensus       165 iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~~~  244 (327)
T PRK11308        165 IARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFN  244 (327)
T ss_pred             HHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence            9999999999999999999 9999999999999999775 2     37999988764   35789999999999988753

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=100.00  E-value=3e-48  Score=314.19  Aligned_cols=195  Identities=24%  Similarity=0.287  Sum_probs=166.1

Q ss_pred             CcccccccCC-cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc------cccceEE
Q psy8250           1 METFHPLFGD-TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN------LMVKVSG   73 (212)
Q Consensus         1 ~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~------~~~~~i~   73 (212)
                      ++++++.|++ +.+|+|+||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++...      ..++.++
T Consensus         3 ~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~   81 (214)
T cd03292           3 FINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELP-TSGTIRVNGQDVSDLRGRAIPYLRRKIG   81 (214)
T ss_pred             EEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEEcccCCHHHHHHHHHheE
Confidence            4689999964 6799999999999999999999999999999999999988 699999999987532      2356799


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeE
Q psy8250          74 FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGF  153 (212)
Q Consensus        74 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~ll  153 (212)
                      |++|++.+++.+|+.||+.++.....   ....+..+++.++++.+|+.+..++++.+||||||||++|||||+.+|+++
T Consensus        82 ~v~q~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll  158 (214)
T cd03292          82 VVFQDFRLLPDRNVYENVAFALEVTG---VPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTIL  158 (214)
T ss_pred             EEecCchhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEE
Confidence            99999999999999999988654321   233444567889999999998889999999999999999999999999999


Q ss_pred             EecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcC
Q psy8250         154 VPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELG  199 (212)
Q Consensus       154 ilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~  199 (212)
                      ||||||+ ||+.++..+.++|++++++.     .+|+.+.+... +  .+|++|+
T Consensus       159 llDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~  213 (214)
T cd03292         159 IADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGK  213 (214)
T ss_pred             EEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence            9999999 99999999999999986543     27999887653 3  2455554

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK10908 cell division protein FtsE; Provisional

Probab=100.00  E-value=2.9e-48  Score=316.31  Aligned_cols=197  Identities=20%  Similarity=0.257  Sum_probs=168.9

Q ss_pred             Cccccccc-CCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc------cccceEE
Q psy8250           1 METFHPLF-GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN------LMVKVSG   73 (212)
Q Consensus         1 ~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~------~~~~~i~   73 (212)
                      ++++++.| +++.+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++...      .+++.++
T Consensus         4 ~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~   82 (222)
T PRK10908          4 FEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERP-SAGKIWFSGHDITRLKNREVPFLRRQIG   82 (222)
T ss_pred             EEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEcccCChhHHHHHHhheE
Confidence            46899999 667899999999999999999999999999999999999988 699999999987431      1356799


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeE
Q psy8250          74 FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGF  153 (212)
Q Consensus        74 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~ll  153 (212)
                      |++|++.+++.+|+.||+.+.....   .....+....+.++++.+++.+..++.+.+||||||||++|||||+.+|++|
T Consensus        83 ~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll  159 (222)
T PRK10908         83 MIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVL  159 (222)
T ss_pred             EEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEE
Confidence            9999998888999999998865432   1233344556788999999998889999999999999999999999999999


Q ss_pred             EecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCee
Q psy8250         154 VPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLL  201 (212)
Q Consensus       154 ilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~  201 (212)
                      ||||||+ ||+.+++.++++|++++.+.     .+|+++.+... +  .+|++|+++
T Consensus       160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~  216 (222)
T PRK10908        160 LADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH  216 (222)
T ss_pred             EEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence            9999999 99999999999999997643     37999988764 3  367788764

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.8e-48  Score=331.73  Aligned_cols=209  Identities=17%  Similarity=0.215  Sum_probs=176.7

Q ss_pred             CcccccccCC----cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCC---CCceEEEECCEeCCcc---c---
Q psy8250           1 METFHPLFGD----TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQG---DVDGQILLNGLEVEKN---L---   67 (212)
Q Consensus         1 ~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p---~~~G~I~~~g~~~~~~---~---   67 (212)
                      ++++++.|+.    ..+|+||||+|++||++||+||||||||||+++|+|++.|   .++|+|.++|+++...   .   
T Consensus         6 v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~   85 (326)
T PRK11022          6 VDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRN   85 (326)
T ss_pred             EeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHH
Confidence            4789999976    4699999999999999999999999999999999999873   1589999999998532   1   


Q ss_pred             -ccceEEEEcCCC--CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc---ccCCCCCCCChHHHHHHH
Q psy8250          68 -MVKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK---CKNSVLNVLSGGERKRVA  141 (212)
Q Consensus        68 -~~~~i~~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~---~~~~~~~~LSgGqrqRv~  141 (212)
                       +++.++|+||++  .+++.+|+.+++......+.  +....+..+++.++++.+|+.+   ..++++.+|||||||||+
T Consensus        86 ~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~  163 (326)
T PRK11022         86 LVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVM  163 (326)
T ss_pred             HhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHH
Confidence             224699999998  47888999998876554331  2234556678899999999964   568999999999999999


Q ss_pred             HHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250         142 LAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR------NLHHVERARTV-D--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       142 lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      |||||+.+|++||+||||+ ||+.++.+++++|++++++.      .|||++.+... +  .+|++|++++.|+++++.+
T Consensus       164 iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~~~~~  243 (326)
T PRK11022        164 IAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFR  243 (326)
T ss_pred             HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhh
Confidence            9999999999999999999 99999999999999998752      37999988664 3  5889999999999988753

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=3e-48  Score=313.70  Aligned_cols=187  Identities=22%  Similarity=0.307  Sum_probs=160.8

Q ss_pred             CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEEE
Q psy8250           1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGFV   75 (212)
Q Consensus         1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~v   75 (212)
                      ++++++.|++  +.+|+++||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++...   .+++.++|+
T Consensus         2 ~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~   80 (211)
T cd03225           2 LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP-TSGEVLVDGKDLTKLSLKELRRKVGLV   80 (211)
T ss_pred             ceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEEcccCCHHHHHhhceEE
Confidence            5789999987  7899999999999999999999999999999999999998 699999999987532   245679999


Q ss_pred             cCCCC-CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEE
Q psy8250          76 PQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFV  154 (212)
Q Consensus        76 ~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~lli  154 (212)
                      +|++. .++.+|+.||+.+.....   ..........+.++++.+++.+..++++.+||||||||++|||||+.+|+++|
T Consensus        81 ~q~~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lll  157 (211)
T cd03225          81 FQNPDDQFFGPTVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILL  157 (211)
T ss_pred             ecChhhhcCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence            99975 366789999998754332   12233445568889999999988899999999999999999999999999999


Q ss_pred             ecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH
Q psy8250         155 PQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV  191 (212)
Q Consensus       155 lDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~  191 (212)
                      |||||+ ||+.++..++++|++++.++     .+|+++.+...
T Consensus       158 lDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~  200 (211)
T cd03225         158 LDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLEL  200 (211)
T ss_pred             EcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence            999999 99999999999999997643     37999988663

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.4e-48  Score=319.73  Aligned_cols=206  Identities=20%  Similarity=0.266  Sum_probs=176.2

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---------ccccce
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---------NLMVKV   71 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---------~~~~~~   71 (212)
                      ++++++.|+++.+|+|+||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++..         ...++.
T Consensus         5 ~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~~~   83 (242)
T PRK11124          5 LNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMP-RSGTLNIAGNHFDFSKTPSDKAIRELRRN   83 (242)
T ss_pred             EEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEecccccccchhhHHHHHhh
Confidence            36889999888899999999999999999999999999999999999988 69999999998631         123467


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHH-hhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCC
Q psy8250          72 SGFVPQHDLTVDTLTVHEHMTLMA-RLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQ  150 (212)
Q Consensus        72 i~~v~Q~~~~~~~ltv~e~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p  150 (212)
                      ++|+||++.+++.+|+.||+.+.. ...   +....+....+.++++.+|+.+..++.+.+||||||||++|||||+.+|
T Consensus        84 i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p  160 (242)
T PRK11124         84 VGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEP  160 (242)
T ss_pred             eEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence            999999999999999999997532 221   1223344567889999999998899999999999999999999999999


Q ss_pred             CeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         151 SGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       151 ~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      +++||||||+ ||+.++..++++|+++++++     .+|+.+.+... +  .+|++|+++..|+++++.
T Consensus       161 ~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~  229 (242)
T PRK11124        161 QVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFT  229 (242)
T ss_pred             CEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhc
Confidence            9999999999 99999999999999987643     27999988653 3  468899999999988764

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.8e-48  Score=327.91  Aligned_cols=205  Identities=19%  Similarity=0.272  Sum_probs=174.4

Q ss_pred             CcccccccCC-----cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc-------ccc
Q psy8250           1 METFHPLFGD-----TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-------NLM   68 (212)
Q Consensus         1 ~~~l~~~~~~-----~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~-------~~~   68 (212)
                      ++++++.|++     +.+|+||||+|++|++++|+||||||||||+++|+|++.| ++|+|+++|.++..       ..+
T Consensus         5 ~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p-~~G~i~~~g~~i~~~~~~~~~~~~   83 (286)
T PRK13646          5 FDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKP-TTGTVTVDDITITHKTKDKYIRPV   83 (286)
T ss_pred             EEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEECCEECccccccchHHHH
Confidence            4689999963     3699999999999999999999999999999999999998 69999999998843       134


Q ss_pred             cceEEEEcCCC--CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHH
Q psy8250          69 VKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQ  145 (212)
Q Consensus        69 ~~~i~~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~a  145 (212)
                      ++.+||+||++  .+++ .|+.||+.++....   +....+...++.++++.+|+. +..++++.+||||||||++||||
T Consensus        84 ~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lara  159 (286)
T PRK13646         84 RKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSI  159 (286)
T ss_pred             HhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHH
Confidence            56799999987  3454 59999998865432   233445566788999999997 67889999999999999999999


Q ss_pred             HhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         146 TIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       146 l~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      |+.+|+++||||||+ ||+.++..+.++|++++.+ +     .+|+++.+... +  .+|++|++++.|+++++.
T Consensus       160 L~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~  234 (286)
T PRK13646        160 LAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELF  234 (286)
T ss_pred             HHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            999999999999999 9999999999999999754 2     27999987654 3  478899999999988754

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=100.00  E-value=4.2e-48  Score=335.59  Aligned_cols=201  Identities=23%  Similarity=0.303  Sum_probs=174.7

Q ss_pred             ccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-------cccceEEEE
Q psy8250           3 TFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-------LMVKVSGFV   75 (212)
Q Consensus         3 ~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-------~~~~~i~~v   75 (212)
                      ++++.|+++.+  ++||++++|++++|+||||||||||+++|+|+++| ++|+|.++|+++...       ..++.++|+
T Consensus         4 ~l~~~~~~~~~--~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p-~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v   80 (354)
T TIGR02142         4 RFSKRLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRP-DEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV   80 (354)
T ss_pred             EEEEEECCEEE--EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEECccCccccccchhhCCeEEE
Confidence            68899987654  99999999999999999999999999999999998 699999999987421       235679999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEe
Q psy8250          76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVP  155 (212)
Q Consensus        76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llil  155 (212)
                      ||++.+|+.+|++||+.++....     ...+...++.++++.+|+.+..++++.+||||||||++|||||+.+|++|||
T Consensus        81 ~q~~~l~~~~tv~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllL  155 (354)
T TIGR02142        81 FQEARLFPHLSVRGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLM  155 (354)
T ss_pred             ecCCccCCCCcHHHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            99999999999999998865321     1223455688999999999999999999999999999999999999999999


Q ss_pred             cCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250         156 QHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       156 DEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      ||||+ ||+.++..++++|++++++ .     .||+++++... +  .+|++|+++..|+++++.+
T Consensus       156 DEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  221 (354)
T TIGR02142       156 DEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWA  221 (354)
T ss_pred             cCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhc
Confidence            99999 9999999999999999765 2     37999988664 3  4788999999999988764

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.3e-48  Score=321.29  Aligned_cols=209  Identities=19%  Similarity=0.249  Sum_probs=176.3

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccc----ccceEEEEc
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL----MVKVSGFVP   76 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~----~~~~i~~v~   76 (212)
                      ++++++.|+++.+|+++||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++....    .+..++|+|
T Consensus         8 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~~i~~~~   86 (255)
T PRK11300          8 VSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKP-TGGTILLRGQHIEGLPGHQIARMGVVRTF   86 (255)
T ss_pred             EeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC-CcceEEECCEECCCCCHHHHHhcCeEEec
Confidence            46899999888899999999999999999999999999999999999998 6999999999875421    234589999


Q ss_pred             CCCCCCCCCCHHHHHHHHHhhhc-------ccC---C--CHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHH
Q psy8250          77 QHDLTVDTLTVHEHMTLMARLKM-------DRN---L--HHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAV  144 (212)
Q Consensus        77 Q~~~~~~~ltv~e~l~~~~~~~~-------~~~---~--~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~  144 (212)
                      |++.+++.+|+.||+.++.....       ...   .  ...+....+.++++.+|+.+..++++.+||||||||++|||
T Consensus        87 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~  166 (255)
T PRK11300         87 QHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIAR  166 (255)
T ss_pred             cCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHH
Confidence            99999999999999998542110       000   0  11223456788999999998899999999999999999999


Q ss_pred             HHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         145 QTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       145 al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      ||+.+|++|||||||+ ||+.++..++++|.+++++ +     .+|+++.+... +  .++++|+++..|+++++.
T Consensus       167 al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~  242 (255)
T PRK11300        167 CMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIR  242 (255)
T ss_pred             HHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHHHHh
Confidence            9999999999999999 9999999999999999764 3     27999988664 3  478899999999988764

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.1e-48  Score=326.85  Aligned_cols=206  Identities=21%  Similarity=0.279  Sum_probs=176.5

Q ss_pred             CcccccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc----ccccceEEEE
Q psy8250           1 METFHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK----NLMVKVSGFV   75 (212)
Q Consensus         1 ~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~----~~~~~~i~~v   75 (212)
                      ++++++.|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|+++|.++..    ..+++.++|+
T Consensus         4 ~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~~i~~v   82 (274)
T PRK13644          4 LENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRP-QKGKVLVSGIDTGDFSKLQGIRKLVGIV   82 (274)
T ss_pred             EEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEECCccccHHHHHhheEEE
Confidence            468999995 56799999999999999999999999999999999999998 69999999998843    2345679999


Q ss_pred             cCCCC-CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEE
Q psy8250          76 PQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFV  154 (212)
Q Consensus        76 ~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~lli  154 (212)
                      +|++. .++..|+.||+.+.....   ........+.+.++++.+|+.+..++++.+||+||+||++|||||+.+|+++|
T Consensus        83 ~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lll  159 (274)
T PRK13644         83 FQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLI  159 (274)
T ss_pred             EEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence            99985 366689999998765432   22344555678899999999999999999999999999999999999999999


Q ss_pred             ecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHHH--HHHHhcCeeecCCchhhh
Q psy8250         155 PQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTVD--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       155 lDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~  210 (212)
                      |||||+ ||+.++..++++|++++.++     .+|+++.+..++  .+|++|++++.|+++++.
T Consensus       160 LDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  223 (274)
T PRK13644        160 FDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVL  223 (274)
T ss_pred             EeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHh
Confidence            999999 99999999999999997643     279999875443  478899999999988764

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=100.00  E-value=3.2e-48  Score=313.81  Aligned_cols=196  Identities=28%  Similarity=0.395  Sum_probs=166.9

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc-----ccccceEEEE
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-----NLMVKVSGFV   75 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~-----~~~~~~i~~v   75 (212)
                      ++++++.|+++.+++++||++++|++++|+||||||||||+++|+|+++| ++|+|.++|+++..     ...++.++|+
T Consensus         3 ~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~i~~~   81 (213)
T cd03262           3 IKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEP-DSGTIIIDGLKLTDDKKNINELRQKVGMV   81 (213)
T ss_pred             EEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEECCccchhHHHHHhcceEE
Confidence            46899999888899999999999999999999999999999999999998 69999999998742     1235679999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEe
Q psy8250          76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVP  155 (212)
Q Consensus        76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llil  155 (212)
                      +|++.+++.+|+.||+.++.....  .....+..+.+.++++.+|+.+..++++.+|||||+||++|||||+.+|+++||
T Consensus        82 ~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll  159 (213)
T cd03262          82 FQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLF  159 (213)
T ss_pred             ecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEE
Confidence            999999999999999988643211  123334456788999999999888999999999999999999999999999999


Q ss_pred             cCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcC
Q psy8250         156 QHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELG  199 (212)
Q Consensus       156 DEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~  199 (212)
                      ||||+ ||+.++..+.++|++++++.     .+|+.+.+... +  .+|++|+
T Consensus       160 DEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~  212 (213)
T cd03262         160 DEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGR  212 (213)
T ss_pred             eCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence            99999 99999999999999997643     27999887653 2  3555654

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.4e-48  Score=326.25  Aligned_cols=207  Identities=23%  Similarity=0.299  Sum_probs=177.1

Q ss_pred             CcccccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc-----ccccceEEE
Q psy8250           1 METFHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-----NLMVKVSGF   74 (212)
Q Consensus         1 ~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~-----~~~~~~i~~   74 (212)
                      ++++++.|+ ++.+++++||+|.+||+++|+||||||||||+++|+|+++| ++|+|.++|.++..     ..+++.++|
T Consensus         8 ~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p-~~G~i~i~g~~~~~~~~~~~~~~~~ig~   86 (283)
T PRK13636          8 VEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP-SSGRILFDGKPIDYSRKGLMKLRESVGM   86 (283)
T ss_pred             EEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CccEEEECCEECCCCcchHHHHHhhEEE
Confidence            478999996 57799999999999999999999999999999999999998 69999999998741     134567999


Q ss_pred             EcCCCC-CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeE
Q psy8250          75 VPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGF  153 (212)
Q Consensus        75 v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~ll  153 (212)
                      +||++. .++..|++||+.+.....   +.+..+...++.++++.+|+.+..++++.+||||||||++|||||+.+|++|
T Consensus        87 v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lL  163 (283)
T PRK13636         87 VFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVL  163 (283)
T ss_pred             EecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            999973 334579999998764422   2334455567899999999999999999999999999999999999999999


Q ss_pred             EecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250         154 VPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       154 ilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      ||||||+ ||+.++..++++|++++.+ +     .+|+++.+... +  .+|++|++++.|+++++.+
T Consensus       164 ilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~  231 (283)
T PRK13636        164 VLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA  231 (283)
T ss_pred             EEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            9999999 9999999999999999764 2     27999988753 3  4788999999999888653

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.8e-48  Score=320.59  Aligned_cols=200  Identities=27%  Similarity=0.353  Sum_probs=171.1

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL   80 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~   80 (212)
                      ++++++.|++..+++|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++..  ....++|++|++.
T Consensus         4 ~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~--~~~~~~~v~q~~~   80 (255)
T PRK11248          4 ISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPY-QHGSITLDGKPVEG--PGAERGVVFQNEG   80 (255)
T ss_pred             EEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEECCC--CCCcEEEEeCCCc
Confidence            46899999888899999999999999999999999999999999999998 69999999998753  2345899999999


Q ss_pred             CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC
Q psy8250          81 TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT  160 (212)
Q Consensus        81 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~  160 (212)
                      +++.+|+.||+.+.....   .....+...++.++++.+|+.+..++++.+||||||||++|||||+.+|++|||||||+
T Consensus        81 ~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~  157 (255)
T PRK11248         81 LLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFG  157 (255)
T ss_pred             cCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence            999899999998764432   12333445678899999999988899999999999999999999999999999999999


Q ss_pred             -CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHH--hcCeeecCCc
Q psy8250         161 -VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLK--ELGLLKCRPA  206 (212)
Q Consensus       161 -lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~--~g~~~~~~~~  206 (212)
                       ||+.++..+.++|++++.+ .     .+|+++.+... +  .+|+  +|+++..++.
T Consensus       158 ~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~  215 (255)
T PRK11248        158 ALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL  215 (255)
T ss_pred             cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence             9999999999999998543 2     37999988664 3  3666  4888877643

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.6e-48  Score=327.00  Aligned_cols=206  Identities=21%  Similarity=0.265  Sum_probs=177.3

Q ss_pred             CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEEE
Q psy8250           1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGFV   75 (212)
Q Consensus         1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~v   75 (212)
                      ++++++.|++  +.+|+++||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|+++...   ..++.++|+
T Consensus         8 ~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p-~~G~i~~~g~~i~~~~~~~~~~~i~~~   86 (279)
T PRK13635          8 VEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP-EAGTITVGGMVLSEETVWDVRRQVGMV   86 (279)
T ss_pred             EEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCcEEEECCEECCcCcHHHHhhheEEE
Confidence            4689999964  5699999999999999999999999999999999999999 699999999988542   345679999


Q ss_pred             cCCCC-CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEE
Q psy8250          76 PQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFV  154 (212)
Q Consensus        76 ~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~lli  154 (212)
                      ||++. +++..|+.||+.++....   .....+...++.++++.+|+.+..++++.+||||||||++|||||+.+|++||
T Consensus        87 ~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lll  163 (279)
T PRK13635         87 FQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIII  163 (279)
T ss_pred             EeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence            99983 667789999998865432   22344556678999999999999999999999999999999999999999999


Q ss_pred             ecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHHH--HHHHhcCeeecCCchhhh
Q psy8250         155 PQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTVD--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       155 lDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~  210 (212)
                      |||||+ ||+.++..++++|++++.+ .     .+|+++.+..++  .++++|++++.|+++++.
T Consensus       164 LDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  228 (279)
T PRK13635        164 LDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIF  228 (279)
T ss_pred             EeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHh
Confidence            999999 9999999999999999865 2     269999886543  478899999999988764

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=100.00  E-value=3.1e-48  Score=314.16  Aligned_cols=200  Identities=25%  Similarity=0.313  Sum_probs=165.1

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL   80 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~   80 (212)
                      ++++++.|++..+++++||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++.  ..++.++|++|++.
T Consensus         2 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p-~~G~i~~~g~~~~--~~~~~i~~v~q~~~   78 (213)
T cd03235           2 VEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKP-TSGSIRVFGKPLE--KERKRIGYVPQRRS   78 (213)
T ss_pred             cccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CCCEEEECCccHH--HHHhheEEeccccc
Confidence            57899999888899999999999999999999999999999999999998 6999999998764  24567999999987


Q ss_pred             CC--CCCCHHHHHHHHHhhhcc-cCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecC
Q psy8250          81 TV--DTLTVHEHMTLMARLKMD-RNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQH  157 (212)
Q Consensus        81 ~~--~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDE  157 (212)
                      ++  +.+|+.||+.+....... .........+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||
T Consensus        79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDE  158 (213)
T cd03235          79 IDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDE  158 (213)
T ss_pred             cccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence            63  347999999875432110 001112345578899999999988899999999999999999999999999999999


Q ss_pred             CCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecC
Q psy8250         158 DLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCR  204 (212)
Q Consensus       158 Pt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~  204 (212)
                      ||+ ||+.++..+.++|++++++.     .+|+++++... +  .+|++| +++.|
T Consensus       159 Pt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g  213 (213)
T cd03235         159 PFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG  213 (213)
T ss_pred             CcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence            999 99999999999999987543     37999988664 3  356554 55543

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.8e-48  Score=323.13  Aligned_cols=206  Identities=17%  Similarity=0.231  Sum_probs=174.5

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc-----ccccceEEEE
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-----NLMVKVSGFV   75 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~-----~~~~~~i~~v   75 (212)
                      ++++++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|+++..     ...++.++|+
T Consensus         4 ~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~~~~~~~~~i~~v   82 (271)
T PRK13638          4 TSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRP-QKGAVLWQGKPLDYSKRGLLALRQQVATV   82 (271)
T ss_pred             EEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CccEEEECCEEcccccCCHHHHHhheEEE
Confidence            46899999888899999999999999999999999999999999999998 69999999998742     1234679999


Q ss_pred             cCCCCC-CCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEE
Q psy8250          76 PQHDLT-VDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFV  154 (212)
Q Consensus        76 ~Q~~~~-~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~lli  154 (212)
                      ||++.. ++..++.+|+.++....   +....+....+.++++.+|+.+..++++.+||||||||++|||||+.+|++||
T Consensus        83 ~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lll  159 (271)
T PRK13638         83 FQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLL  159 (271)
T ss_pred             eeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEE
Confidence            999753 34568999998764332   12333445567889999999988899999999999999999999999999999


Q ss_pred             ecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         155 PQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       155 lDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      |||||+ ||+.++..++++|.+++.+.     .+|+++.+... +  .+|++|++++.|+++++.
T Consensus       160 LDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  224 (271)
T PRK13638        160 LDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVF  224 (271)
T ss_pred             EeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            999999 99999999999999997543     27999988653 3  478899999999988764

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.4e-48  Score=317.16  Aligned_cols=205  Identities=16%  Similarity=0.274  Sum_probs=174.1

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc----cccceEEEEc
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN----LMVKVSGFVP   76 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~----~~~~~i~~v~   76 (212)
                      ++++++.|+++.+|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...    ..++.++|++
T Consensus         8 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p-~~G~i~~~g~~~~~~~~~~~~~~~i~~~~   86 (237)
T PRK11614          8 FDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRA-TSGRIVFDGKDITDWQTAKIMREAVAIVP   86 (237)
T ss_pred             EEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC-CCceEEECCEecCCCCHHHHHHhCEEEec
Confidence            36889999888899999999999999999999999999999999999998 699999999987542    1345799999


Q ss_pred             CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHc-CCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEe
Q psy8250          77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKEL-GLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVP  155 (212)
Q Consensus        77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llil  155 (212)
                      |++.+++.+|+.+|+.+.....     ........+.++++.+ ++.+..++++.+||||||||++|||||+.+|+++||
T Consensus        87 q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illl  161 (237)
T PRK11614         87 EGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLL  161 (237)
T ss_pred             cCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence            9999999899999998754211     1122334567778888 577777889999999999999999999999999999


Q ss_pred             cCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250         156 QHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       156 DEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      ||||+ ||+.++..+.++|++++++.     .+|+++++... +  .+|++|+++..|+++++.+
T Consensus       162 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  226 (237)
T PRK11614        162 DEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA  226 (237)
T ss_pred             cCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence            99999 99999999999999987643     27999887664 3  4788999999999988753

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=100.00  E-value=5.6e-48  Score=321.39  Aligned_cols=195  Identities=23%  Similarity=0.250  Sum_probs=169.7

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL   80 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~   80 (212)
                      ++++++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++.  .+++.++|++|++.
T Consensus        15 i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p-~~G~i~~~g~~~~--~~~~~i~~v~q~~~   91 (257)
T PRK11247         15 LNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETP-SAGELLAGTAPLA--EAREDTRLMFQDAR   91 (257)
T ss_pred             EEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCeEEEECCEEHH--HhhCceEEEecCcc
Confidence            46899999988899999999999999999999999999999999999998 6999999998763  24567999999999


Q ss_pred             CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC
Q psy8250          81 TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT  160 (212)
Q Consensus        81 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~  160 (212)
                      +++.+|++||+.+...     .    ....++.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||+
T Consensus        92 l~~~~tv~enl~~~~~-----~----~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~  162 (257)
T PRK11247         92 LLPWKKVIDNVGLGLK-----G----QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLG  162 (257)
T ss_pred             CCCCCcHHHHHHhccc-----c----hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence            9988999999987421     0    123467889999999988999999999999999999999999999999999999


Q ss_pred             -CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCch
Q psy8250         161 -VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPAD  207 (212)
Q Consensus       161 -lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~  207 (212)
                       ||+.++..+.++|.++..+ .     .+||.+.+... +  .+|++|+++.+++.+
T Consensus       163 ~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~  219 (257)
T PRK11247        163 ALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD  219 (257)
T ss_pred             CCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence             9999999999999998653 2     37999887654 3  467899998888654

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=100.00  E-value=5.4e-48  Score=316.16  Aligned_cols=203  Identities=19%  Similarity=0.260  Sum_probs=173.5

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccc----ccceEEEEc
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL----MVKVSGFVP   76 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~----~~~~i~~v~   76 (212)
                      ++++++.|+++.+|+|+||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++....    .++.++|+|
T Consensus         3 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~i~~~~   81 (230)
T TIGR03410         3 VSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPV-KSGSIRLDGEDITKLPPHERARAGIAYVP   81 (230)
T ss_pred             EEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCEEEECCEECCCCCHHHHHHhCeEEec
Confidence            47899999988899999999999999999999999999999999999998 6999999999875321    245699999


Q ss_pred             CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcC-CccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEe
Q psy8250          77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELG-LLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVP  155 (212)
Q Consensus        77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-l~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llil  155 (212)
                      |++.+++.+|+.+|+.++...+.   ..   ....+.++++.++ +.+..++++.+|||||+||++|||||+.+|+++||
T Consensus        82 q~~~~~~~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illl  155 (230)
T TIGR03410        82 QGREIFPRLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLL  155 (230)
T ss_pred             cCCcccCCCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence            99999999999999987654321   11   1234567788886 56778999999999999999999999999999999


Q ss_pred             cCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         156 QHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       156 DEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      ||||+ ||+.++..++++|.+++.+ .     .+|+++.+... +  .++++|+++..|+++++.
T Consensus       156 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~  220 (230)
T TIGR03410       156 DEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD  220 (230)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence            99999 9999999999999998764 2     27999988764 3  478899999999988874

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.2e-47  Score=322.70  Aligned_cols=206  Identities=23%  Similarity=0.321  Sum_probs=175.9

Q ss_pred             CcccccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEc
Q psy8250           1 METFHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVP   76 (212)
Q Consensus         1 ~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~   76 (212)
                      ++++++.|+ ...+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++..   ..+++.++|+|
T Consensus         6 ~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~i~~v~   84 (277)
T PRK13652          6 TRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKP-TSGSVLIRGEPITKENIREVRKFVGLVF   84 (277)
T ss_pred             EEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEECCcCCHHHHHhheEEEe
Confidence            368999995 45699999999999999999999999999999999999998 69999999998753   23456789999


Q ss_pred             CCCC-CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEe
Q psy8250          77 QHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVP  155 (212)
Q Consensus        77 Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llil  155 (212)
                      |++. .+...|+.+|+.+.....   ........+.+.++++.+++.+..++.+.+||||||||++|||||+.+|++|||
T Consensus        85 q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llil  161 (277)
T PRK13652         85 QNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVL  161 (277)
T ss_pred             cCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            9974 344679999998754322   223444556788999999999889999999999999999999999999999999


Q ss_pred             cCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         156 QHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       156 DEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      ||||+ ||+.++..++++|++++.+ .     .+|+++.+... +  .+|++|++++.|+++++.
T Consensus       162 DEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~  226 (277)
T PRK13652        162 DEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIF  226 (277)
T ss_pred             eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHh
Confidence            99999 9999999999999999765 2     27999988654 3  478899999999998874

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.3e-48  Score=329.40  Aligned_cols=205  Identities=21%  Similarity=0.247  Sum_probs=173.9

Q ss_pred             CcccccccCC-----cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---------
Q psy8250           1 METFHPLFGD-----TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---------   66 (212)
Q Consensus         1 ~~~l~~~~~~-----~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---------   66 (212)
                      ++++++.|++     ..+|+||||+|++|+++||+||||||||||+++|+|+++| ++|+|+++|.++...         
T Consensus        24 ~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p-~~G~I~i~g~~~~~~~~~~~~~~~  102 (320)
T PRK13631         24 VKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKS-KYGTIQVGDIYIGDKKNNHELITN  102 (320)
T ss_pred             EEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCeEEECCEEccccccccccccc
Confidence            4688999964     3599999999999999999999999999999999999998 699999999886421         


Q ss_pred             ----------cccceEEEEcCCC--CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCC
Q psy8250          67 ----------LMVKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLS  133 (212)
Q Consensus        67 ----------~~~~~i~~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS  133 (212)
                                .+++.++|+||++  .+++ .|++||+.++....   ..+..+...++.++++.+|+. ...++.+.+||
T Consensus       103 ~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LS  178 (320)
T PRK13631        103 PYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLS  178 (320)
T ss_pred             ccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCChhHhcCCcccCC
Confidence                      2456799999997  4555 59999998865322   223445566788999999996 67899999999


Q ss_pred             hHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecC
Q psy8250         134 GGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCR  204 (212)
Q Consensus       134 gGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~  204 (212)
                      ||||||++|||||+.+|++|||||||+ ||+.++..++++|.+++.++     .+|+++.+... +  .+|++|+++..|
T Consensus       179 gGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~~~g  258 (320)
T PRK13631        179 GGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTG  258 (320)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence            999999999999999999999999999 99999999999999987643     27999987653 3  478899999999


Q ss_pred             Cchhhh
Q psy8250         205 PADELN  210 (212)
Q Consensus       205 ~~~~~~  210 (212)
                      +++++.
T Consensus       259 ~~~~~~  264 (320)
T PRK13631        259 TPYEIF  264 (320)
T ss_pred             CHHHHh
Confidence            998764

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.1e-48  Score=333.19  Aligned_cols=197  Identities=23%  Similarity=0.301  Sum_probs=172.5

Q ss_pred             ccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc-------ccccceEEEE
Q psy8250           3 TFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-------NLMVKVSGFV   75 (212)
Q Consensus         3 ~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~-------~~~~~~i~~v   75 (212)
                      ++++.|+++.+  |+||++++|++++|+||||||||||+++|+|+++| ++|+|+++|+++..       ...++.++|+
T Consensus         5 ~l~k~~~~~~~--~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p-~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v   81 (352)
T PRK11144          5 NFKQQLGDLCL--TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRP-QKGRIVLNGRVLFDAEKGICLPPEKRRIGYV   81 (352)
T ss_pred             EEEEEeCCEEE--EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEccccccccccchhhCCEEEE
Confidence            67899987543  89999999999999999999999999999999998 69999999998742       1235679999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEe
Q psy8250          76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVP  155 (212)
Q Consensus        76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llil  155 (212)
                      ||++.+|+.+|++||+.++...         ...+++.++++.+|+.+..++++.+|||||||||+|||||+.+|++|||
T Consensus        82 ~q~~~l~~~~tv~enl~~~~~~---------~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLL  152 (352)
T PRK11144         82 FQDARLFPHYKVRGNLRYGMAK---------SMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLM  152 (352)
T ss_pred             cCCcccCCCCcHHHHHHhhhhh---------hhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            9999999999999999875321         1245678999999999999999999999999999999999999999999


Q ss_pred             cCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250         156 QHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       156 DEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      ||||+ ||+.++..++++|++++++ .     +|||.+++... +  .+|++|+++..|+++++..
T Consensus       153 DEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~  218 (352)
T PRK11144        153 DEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWA  218 (352)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence            99999 9999999999999998765 2     37999988664 3  4788999999999998864

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.9e-48  Score=320.35  Aligned_cols=209  Identities=23%  Similarity=0.317  Sum_probs=176.2

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEcC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQ   77 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~Q   77 (212)
                      ++++++.|+++.+|+++||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++..   ..+++.++|+||
T Consensus         5 ~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~q   83 (255)
T PRK11231          5 TENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP-QSGTVFLGDKPISMLSSRQLARRLALLPQ   83 (255)
T ss_pred             EEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC-CCcEEEECCEEhHHCCHHHHhhheEEecc
Confidence            46899999988899999999999999999999999999999999999988 69999999998743   233456999999


Q ss_pred             CCCCCCCCCHHHHHHHHHhhh-cccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250          78 HDLTVDTLTVHEHMTLMARLK-MDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ  156 (212)
Q Consensus        78 ~~~~~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD  156 (212)
                      ++.+++.+|++||+.++.... .............+.++++.+++.+..++++.+|||||+||++|||||+.+|++||||
T Consensus        84 ~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD  163 (255)
T PRK11231         84 HHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLD  163 (255)
T ss_pred             cCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            998888899999998752110 0001111234456788999999998899999999999999999999999999999999


Q ss_pred             CCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         157 HDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       157 EPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      |||+ ||+.++..+.++|++++.+.     .+|+++.+... +  .+|++|+++..|+++++.
T Consensus       164 EP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  226 (255)
T PRK11231        164 EPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM  226 (255)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhc
Confidence            9999 99999999999999987643     27999988664 3  478899999999888763

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-47  Score=317.83  Aligned_cols=209  Identities=22%  Similarity=0.303  Sum_probs=175.8

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCC----CCceEEEECCEeCCc---ccccceEE
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQG----DVDGQILLNGLEVEK---NLMVKVSG   73 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p----~~~G~I~~~g~~~~~---~~~~~~i~   73 (212)
                      ++++++.|++..+++++||+|++|++++|+||||||||||+++|+|+++|    +++|+|.++|.++..   ..+++.++
T Consensus         6 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~   85 (250)
T PRK14247          6 IRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQ   85 (250)
T ss_pred             EEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEE
Confidence            36899999888899999999999999999999999999999999999874    159999999998743   23456799


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHHhhC
Q psy8250          74 FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQTIIV  149 (212)
Q Consensus        74 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al~~~  149 (212)
                      |+||++.+++.+|+.||+.++...... .....+..+.+.++++.+++.    +..++++.+||||||||++|||||+.+
T Consensus        86 ~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~  164 (250)
T PRK14247         86 MVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQ  164 (250)
T ss_pred             EEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence            999999888899999999886543211 012334456788999999985    357889999999999999999999999


Q ss_pred             CCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         150 QSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       150 p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      |+++||||||+ ||+.++..+.++|++++...    .+|+++.+... +  .+|++|+++..|+++++.
T Consensus       165 p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  233 (250)
T PRK14247        165 PEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVF  233 (250)
T ss_pred             CCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence            99999999999 99999999999999986532    27999987653 3  478899999999988764

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=100.00  E-value=1.3e-47  Score=313.09  Aligned_cols=201  Identities=22%  Similarity=0.278  Sum_probs=165.8

Q ss_pred             CcccccccCCc----ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc------cccc
Q psy8250           1 METFHPLFGDT----NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN------LMVK   70 (212)
Q Consensus         1 ~~~l~~~~~~~----~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~------~~~~   70 (212)
                      ++++++.|++.    .+|+++||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++...      .+++
T Consensus         4 ~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~   82 (228)
T cd03257           4 VKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKP-TSGSIIFDGKDLLKLSRRLRKIRRK   82 (228)
T ss_pred             EEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEEccccchhhHHHhhc
Confidence            46899999765    799999999999999999999999999999999999988 699999999987531      2456


Q ss_pred             eEEEEcCCC--CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHH-HHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHHH
Q psy8250          71 VSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHVERART-VDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQT  146 (212)
Q Consensus        71 ~i~~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~-~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~al  146 (212)
                      .++|++|++  .+++.+|+++|+.+....... . ........ +.++++.+++. ...++++.+||||||||++|||||
T Consensus        83 ~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~-~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral  160 (228)
T cd03257          83 EIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGK-L-SKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARAL  160 (228)
T ss_pred             cEEEEecCchhhcCCcCCHHHHHHHHHHhccC-C-cHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHH
Confidence            799999998  466789999999876443211 1 11122222 35889999995 678999999999999999999999


Q ss_pred             hhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecC
Q psy8250         147 IIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCR  204 (212)
Q Consensus       147 ~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~  204 (212)
                      +.+|++|||||||+ ||+.++..+.++|++++.+ .     .+|+++.+... +  .+|++|+++..|
T Consensus       161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g  228 (228)
T cd03257         161 ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG  228 (228)
T ss_pred             hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence            99999999999999 9999999999999999764 2     27999988653 3  467888876543

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=100.00  E-value=1.2e-47  Score=313.65  Aligned_cols=198  Identities=27%  Similarity=0.303  Sum_probs=167.1

Q ss_pred             CcccccccCC----cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccc-------cc
Q psy8250           1 METFHPLFGD----TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL-------MV   69 (212)
Q Consensus         1 ~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~-------~~   69 (212)
                      ++++++.|++    ..+|+++||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++....       .+
T Consensus         9 ~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~~~   87 (228)
T PRK10584          9 VHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDG-SSGEVSLVGQPLHQMDEEARAKLRA   87 (228)
T ss_pred             EeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC-CCeeEEECCEEcccCCHHHHHHHHh
Confidence            4688999975    3599999999999999999999999999999999999988 6999999999875321       13


Q ss_pred             ceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhC
Q psy8250          70 KVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIV  149 (212)
Q Consensus        70 ~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~  149 (212)
                      +.++|++|++.+++.+|+.||+.+.....   ........+++.++++.+++.+..++++.+||||||||++|||||+.+
T Consensus        88 ~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~  164 (228)
T PRK10584         88 KHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGR  164 (228)
T ss_pred             heEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence            56999999999999999999998754332   122344556788999999999888999999999999999999999999


Q ss_pred             CCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHHH--HHHHhcCeee
Q psy8250         150 QSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTVD--ALLKELGLLK  202 (212)
Q Consensus       150 p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~~--~~l~~g~~~~  202 (212)
                      |+++||||||+ ||+.++..++++|++++.+ +     .+||.+.+..++  .+|++|++++
T Consensus       165 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~  226 (228)
T PRK10584        165 PDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQE  226 (228)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEe
Confidence            99999999999 9999999999999999754 2     279998775433  3567777653

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=100.00  E-value=1.9e-47  Score=319.48  Aligned_cols=207  Identities=17%  Similarity=0.229  Sum_probs=174.6

Q ss_pred             CcccccccC---------CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-----
Q psy8250           1 METFHPLFG---------DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-----   66 (212)
Q Consensus         1 ~~~l~~~~~---------~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-----   66 (212)
                      ++++++.|+         ++.+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|+++|.++...     
T Consensus         5 ~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~~~~   83 (265)
T TIGR02769         5 VRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKP-AQGTVSFRGQDLYQLDRKQR   83 (265)
T ss_pred             EEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEEccccCHHHH
Confidence            468899995         35799999999999999999999999999999999999998 699999999987532     


Q ss_pred             -cccceEEEEcCCC--CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHH
Q psy8250          67 -LMVKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVAL  142 (212)
Q Consensus        67 -~~~~~i~~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~l  142 (212)
                       .+++.++|+||++  .+++.+|+.||+.+......  .........++.++++.+|+. ...++++.+||||||||++|
T Consensus        84 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~l  161 (265)
T TIGR02769        84 RAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLT--SLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINI  161 (265)
T ss_pred             HHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHH
Confidence             1345799999997  46678999999987543211  122334456788999999996 67899999999999999999


Q ss_pred             HHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         143 AVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       143 A~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      ||||+.+|++|||||||+ ||+.++..++++|++++++ +     .+|+++.+... +  .+|++|+++..|+++++.
T Consensus       162 aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  239 (265)
T TIGR02769       162 ARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLL  239 (265)
T ss_pred             HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHHc
Confidence            999999999999999999 9999999999999998764 2     37999988654 3  478899999999988874

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.3e-48  Score=321.98  Aligned_cols=209  Identities=20%  Similarity=0.283  Sum_probs=176.1

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEcC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQ   77 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~Q   77 (212)
                      ++++++.|+++.+|+|+||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++..   ..+++.++|++|
T Consensus        14 i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~v~q   92 (265)
T PRK10575         14 LRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPP-SEGEILLDAQPLESWSSKAFARKVAYLPQ   92 (265)
T ss_pred             EeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CCCEEEECCEehhhCCHHHHhhheEEecc
Confidence            46889999888899999999999999999999999999999999999988 69999999998742   234567999999


Q ss_pred             CCCCCCCCCHHHHHHHHHhhhcc-cCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250          78 HDLTVDTLTVHEHMTLMARLKMD-RNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ  156 (212)
Q Consensus        78 ~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD  156 (212)
                      ++.+++.+|+.+|+.+....... ..........++.++++.+++.+..++++.+||||||||++|||||+.+|++||||
T Consensus        93 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLD  172 (265)
T PRK10575         93 QLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLD  172 (265)
T ss_pred             CCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            98888889999999875321100 00111233456789999999988889999999999999999999999999999999


Q ss_pred             CCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         157 HDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       157 EPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      |||+ ||+.++..++++|.+++.+ .     .+|+++.+... +  .+|++|+++..|+++++.
T Consensus       173 EPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~  236 (265)
T PRK10575        173 EPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM  236 (265)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence            9999 9999999999999999754 2     27999988654 3  478899999999888764

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=100.00  E-value=2.1e-47  Score=314.83  Aligned_cols=209  Identities=20%  Similarity=0.210  Sum_probs=173.8

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCC--CCCCceEEEECCEeCCcc---c-ccceEEE
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRI--QGDVDGQILLNGLEVEKN---L-MVKVSGF   74 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~--~p~~~G~I~~~g~~~~~~---~-~~~~i~~   74 (212)
                      ++++++.|+++.+|+|+||+|++|++++|+||||||||||+++|+|++  +| ++|+|.++|+++...   . .+..++|
T Consensus         3 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~-~~G~i~~~g~~~~~~~~~~~~~~~i~~   81 (243)
T TIGR01978         3 IKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEV-TSGTILFKGQDLLELEPDERARAGLFL   81 (243)
T ss_pred             EeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-CcceEEECCEecCCCCHHHhhccceEe
Confidence            478999998888999999999999999999999999999999999995  56 699999999987532   1 2334899


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHhhhcc-c---CCCHHHHHHHHHHHHHHcCCc-cccCCCCC-CCChHHHHHHHHHHHHhh
Q psy8250          75 VPQHDLTVDTLTVHEHMTLMARLKMD-R---NLHHVERARTVDALLKELGLL-KCKNSVLN-VLSGGERKRVALAVQTII  148 (212)
Q Consensus        75 v~Q~~~~~~~ltv~e~l~~~~~~~~~-~---~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~-~LSgGqrqRv~lA~al~~  148 (212)
                      ++|++.+++.+|+.+|+.+....... .   .....+..+++.++++.+++. ...++++. +||||||||++|||||+.
T Consensus        82 v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~  161 (243)
T TIGR01978        82 AFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALL  161 (243)
T ss_pred             eeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhc
Confidence            99999999999999999875432110 0   012223345688999999997 46778887 599999999999999999


Q ss_pred             CCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH--H--HHHHhcCeeecCCchhhh
Q psy8250         149 VQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV--D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       149 ~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~--~--~~l~~g~~~~~~~~~~~~  210 (212)
                      +|+++||||||+ ||+.++..++++|++++++.     .+|+++.+...  +  .+|++|+++..|+++++.
T Consensus       162 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  233 (243)
T TIGR01978       162 EPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELAK  233 (243)
T ss_pred             CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHHhc
Confidence            999999999999 99999999999999997643     37999988653  3  368899999999988664

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=1.2e-47  Score=319.58  Aligned_cols=206  Identities=25%  Similarity=0.310  Sum_probs=175.4

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEcC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQ   77 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~Q   77 (212)
                      ++++++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+++| ++|+|+++|.++..   ..+++.++|++|
T Consensus         5 ~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p-~~G~i~~~g~~~~~~~~~~~~~~i~~~~q   83 (258)
T PRK13548          5 ARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSP-DSGEVRLNGRPLADWSPAELARRRAVLPQ   83 (258)
T ss_pred             EEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCEEEECCEEcccCCHHHhhhheEEEcc
Confidence            46899999988899999999999999999999999999999999999988 69999999998743   223467999999


Q ss_pred             CCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHh------hCCC
Q psy8250          78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTI------IVQS  151 (212)
Q Consensus        78 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~------~~p~  151 (212)
                      ++.+++.+|++||+.+......   .........+.++++.+++.+..++.+.+||||||||++|||||+      .+|+
T Consensus        84 ~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~  160 (258)
T PRK13548         84 HSSLSFPFTVEEVVAMGRAPHG---LSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPR  160 (258)
T ss_pred             CCcCCCCCCHHHHHHhhhcccC---CCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCC
Confidence            9988888999999987543211   112233456788999999998889999999999999999999999      5999


Q ss_pred             eEEecCCCC-CChhhHHHHHHHHHHHH-hhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         152 GFVPQHDLT-VDTLTVHEHMTLMARLK-MDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       152 llilDEPt~-lD~~~~~~~~~~l~~l~-~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      +|||||||+ ||+.++..+.++|++++ +..     .+|+++.+... +  .+|++|+++..|+++++.
T Consensus       161 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  229 (258)
T PRK13548        161 WLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVL  229 (258)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHh
Confidence            999999999 99999999999999987 332     27999988654 3  478899999999888764

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.6e-47  Score=317.72  Aligned_cols=209  Identities=22%  Similarity=0.284  Sum_probs=175.4

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCC----CceEEEECCEeCCc-----ccccce
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD----VDGQILLNGLEVEK-----NLMVKV   71 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~----~~G~I~~~g~~~~~-----~~~~~~   71 (212)
                      ++++++.|++..+|+|+||+|.+||+++|+||||||||||+++|+|+++|+    ++|+|+++|+++..     ..+++.
T Consensus         7 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~   86 (253)
T PRK14267          7 TVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRRE   86 (253)
T ss_pred             EEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhc
Confidence            368999998888999999999999999999999999999999999998762    49999999998741     124567


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHHh
Q psy8250          72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQTI  147 (212)
Q Consensus        72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al~  147 (212)
                      ++|+||++.+++.+|+.||+.+....+.. ..........+.++++.+++.    +..++++.+||||||||++|||||+
T Consensus        87 i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~  165 (253)
T PRK14267         87 VGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALA  165 (253)
T ss_pred             eeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHh
Confidence            99999999999999999999876543211 012334445678899999984    3578889999999999999999999


Q ss_pred             hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      .+|+++||||||+ ||+.++..+.++|++++...    .+|+++.+... +  .+|++|+++..|+++++.
T Consensus       166 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  236 (253)
T PRK14267        166 MKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVF  236 (253)
T ss_pred             cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence            9999999999999 99999999999999986532    27999987653 3  478899999999988874

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.8e-47  Score=318.41  Aligned_cols=206  Identities=19%  Similarity=0.322  Sum_probs=173.9

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCC----CCceEEEECCEeCCc-----ccccce
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQG----DVDGQILLNGLEVEK-----NLMVKV   71 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p----~~~G~I~~~g~~~~~-----~~~~~~   71 (212)
                      ++++++.|+++.+|+|+||+|++|+++||+||||||||||+++|+|+++|    +++|+|.++|.++..     ..+++.
T Consensus        15 ~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~   94 (258)
T PRK14268         15 VENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKN   94 (258)
T ss_pred             EeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhh
Confidence            36889999888899999999999999999999999999999999999874    259999999998742     123567


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHHh
Q psy8250          72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQTI  147 (212)
Q Consensus        72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al~  147 (212)
                      ++|+||++.+++ +|++||+.+....+   +.+.......+.++++.+++.    +..++++.+|||||+||++|||||+
T Consensus        95 i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~  170 (258)
T PRK14268         95 VGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLA  170 (258)
T ss_pred             EEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHH
Confidence            999999998887 89999998865432   123334455678899999883    4578899999999999999999999


Q ss_pred             hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      .+|+++||||||+ ||+.++..++++|+++++..    .+|+++.+... +  .+|++|+++..|+++++.
T Consensus       171 ~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  241 (258)
T PRK14268        171 VKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIF  241 (258)
T ss_pred             cCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            9999999999999 99999999999999986532    37999988664 3  478899999999988874

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=100.00  E-value=2.3e-47  Score=327.94  Aligned_cols=209  Identities=18%  Similarity=0.227  Sum_probs=176.8

Q ss_pred             CcccccccC----CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCC--CceEEEECCEeCCcc---c---c
Q psy8250           1 METFHPLFG----DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD--VDGQILLNGLEVEKN---L---M   68 (212)
Q Consensus         1 ~~~l~~~~~----~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~--~~G~I~~~g~~~~~~---~---~   68 (212)
                      ++++++.|+    ...+++||||+|++||++||+|+||||||||+++|+|+++|.  ++|+|.++|.++...   .   +
T Consensus        15 i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~   94 (330)
T PRK09473         15 VKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKL   94 (330)
T ss_pred             EeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHH
Confidence            468899994    356999999999999999999999999999999999999872  399999999998532   1   1


Q ss_pred             -cceEEEEcCCC--CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc---ccCCCCCCCChHHHHHHHH
Q psy8250          69 -VKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK---CKNSVLNVLSGGERKRVAL  142 (212)
Q Consensus        69 -~~~i~~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~---~~~~~~~~LSgGqrqRv~l  142 (212)
                       ++.++||||++  .+++.+|+.+++.+....+.  .....+...++.++++.+++.+   ..++++.+|||||+|||+|
T Consensus        95 r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~I  172 (330)
T PRK09473         95 RAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMI  172 (330)
T ss_pred             hcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHH
Confidence             24799999998  67889999999987654432  2344555677899999999964   3578999999999999999


Q ss_pred             HHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250         143 AVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR------NLHHVERARTV-D--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       143 A~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      ||||+.+|++||+||||+ ||+.++..++++|++++++.      .|||++.+... +  .+|++|++++.|+++++.+
T Consensus       173 ArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~~i~~  251 (330)
T PRK09473        173 AMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVFY  251 (330)
T ss_pred             HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            999999999999999999 99999999999999998752      37999988764 3  5889999999999988753

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.1e-47  Score=321.91  Aligned_cols=206  Identities=21%  Similarity=0.291  Sum_probs=175.3

Q ss_pred             CcccccccC--CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEEE
Q psy8250           1 METFHPLFG--DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGFV   75 (212)
Q Consensus         1 ~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~v   75 (212)
                      ++++++.|+  ++.+|+++||++++|++++|+||||||||||+++|+|+++| ++|+|+++|.++...   .+++.++|+
T Consensus        10 ~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~I~~~g~~i~~~~~~~~~~~i~~v   88 (271)
T PRK13632         10 VENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP-QSGEIKIDGITISKENLKEIRKKIGII   88 (271)
T ss_pred             EEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEecCcCCHHHHhcceEEE
Confidence            468899995  46799999999999999999999999999999999999998 699999999988532   345679999


Q ss_pred             cCCCC-CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEE
Q psy8250          76 PQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFV  154 (212)
Q Consensus        76 ~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~lli  154 (212)
                      +|++. .++.+|++||+.+.....   .....+....+.++++.+++.+..++++.+||||||||++|||||+.+|++||
T Consensus        89 ~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll  165 (271)
T PRK13632         89 FQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIII  165 (271)
T ss_pred             EeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence            99974 567789999998764322   12333445678899999999999999999999999999999999999999999


Q ss_pred             ecCCCC-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHHH--HHHHhcCeeecCCchhhh
Q psy8250         155 PQHDLT-VDTLTVHEHMTLMARLKMDR------NLHHVERARTVD--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       155 lDEPt~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~  210 (212)
                      |||||+ ||+.++..++++|++++.++      .+|+.+.+..++  .+|++|+++..|+++++.
T Consensus       166 LDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  230 (271)
T PRK13632        166 FDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEIL  230 (271)
T ss_pred             EeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHh
Confidence            999999 99999999999999987642      279998775333  368899999999888764

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2e-47  Score=321.63  Aligned_cols=205  Identities=19%  Similarity=0.198  Sum_probs=172.2

Q ss_pred             CcccccccCC-----cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc-------ccc
Q psy8250           1 METFHPLFGD-----TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-------NLM   68 (212)
Q Consensus         1 ~~~l~~~~~~-----~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~-------~~~   68 (212)
                      ++++++.|++     +.+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|+++..       ...
T Consensus         5 ~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p-~~G~i~~~g~~i~~~~~~~~~~~~   83 (280)
T PRK13649          5 LQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP-TQGSVRVDDTLITSTSKNKDIKQI   83 (280)
T ss_pred             EEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEccccccccCHHHH
Confidence            3688999964     3699999999999999999999999999999999999998 69999999998743       123


Q ss_pred             cceEEEEcCCC--CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHH
Q psy8250          69 VKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQ  145 (212)
Q Consensus        69 ~~~i~~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~a  145 (212)
                      ++.++|+||++  .+++ .|+.||+.+.....   .....+....+.++++.+++. ...++++.+||||||||++||||
T Consensus        84 ~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~a  159 (280)
T PRK13649         84 RKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGI  159 (280)
T ss_pred             HhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHH
Confidence            56799999997  3454 69999998765432   123334455678899999997 46789999999999999999999


Q ss_pred             HhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         146 TIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       146 l~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      |+.+|++|||||||+ ||+.++..+.++|++++++.     .+|+++.+... +  .+|++|+++..|+++++.
T Consensus       160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  233 (280)
T PRK13649        160 LAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIF  233 (280)
T ss_pred             HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            999999999999999 99999999999999987643     37999988654 3  478899999999988764

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.8e-47  Score=317.64  Aligned_cols=207  Identities=19%  Similarity=0.266  Sum_probs=173.8

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCC----CceEEEECCEeCCc-----ccccce
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD----VDGQILLNGLEVEK-----NLMVKV   71 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~----~~G~I~~~g~~~~~-----~~~~~~   71 (212)
                      ++++++.|++..+|+|+||+|++||+++|+||||||||||+++|+|+++|.    ++|+|+++|+++..     ...++.
T Consensus        10 ~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~   89 (254)
T PRK14273         10 TENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRK   89 (254)
T ss_pred             EeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhc
Confidence            468999998888999999999999999999999999999999999999862    48999999998742     124567


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCC----ccccCCCCCCCChHHHHHHHHHHHHh
Q psy8250          72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGL----LKCKNSVLNVLSGGERKRVALAVQTI  147 (212)
Q Consensus        72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl----~~~~~~~~~~LSgGqrqRv~lA~al~  147 (212)
                      ++|++|++.+++ +|++||+.++.....  ..........+.++++.+++    .+..++++.+||||||||++|||||+
T Consensus        90 i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~  166 (254)
T PRK14273         90 IGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLA  166 (254)
T ss_pred             eEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHH
Confidence            999999988875 899999988654321  11233445667888999987    34578899999999999999999999


Q ss_pred             hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      .+|++|||||||+ ||+.++..++++|++++...    .+|+++.+... +  .+|++|+++..|+++++.
T Consensus       167 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  237 (254)
T PRK14273        167 IEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELF  237 (254)
T ss_pred             cCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            9999999999999 99999999999999996432    37999988664 3  478899999999988874

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.7e-47  Score=318.15  Aligned_cols=209  Identities=23%  Similarity=0.265  Sum_probs=176.7

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEEEcC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGFVPQ   77 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~v~Q   77 (212)
                      ++++++.|++..+|+++||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++...   .+++.++|++|
T Consensus         4 ~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~q   82 (256)
T TIGR03873         4 LSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRP-DAGTVDLAGVDLHGLSRRARARRVALVEQ   82 (256)
T ss_pred             EEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC-CCCEEEECCEEcccCCHHHHhhheEEecc
Confidence            46899999988999999999999999999999999999999999999998 699999999987532   23456899999


Q ss_pred             CCCCCCCCCHHHHHHHHHhhh-cccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250          78 HDLTVDTLTVHEHMTLMARLK-MDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ  156 (212)
Q Consensus        78 ~~~~~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD  156 (212)
                      ++.+++.+|+.||+.++.... ........+..+++.++++.+++.+..++++.+|||||+||++|||||+.+|+++|||
T Consensus        83 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD  162 (256)
T TIGR03873        83 DSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLD  162 (256)
T ss_pred             cCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            998888899999998753211 0001111233456889999999998899999999999999999999999999999999


Q ss_pred             CCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         157 HDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       157 EPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      |||+ ||+.++..+.++|++++++.     .+|+++.+... +  .+|++|+++..|+++++.
T Consensus       163 EPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  225 (256)
T TIGR03873       163 EPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVL  225 (256)
T ss_pred             CccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhh
Confidence            9999 99999999999999997643     26999988653 3  478899999999988764

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=100.00  E-value=4.9e-47  Score=305.46  Aligned_cols=184  Identities=28%  Similarity=0.351  Sum_probs=160.8

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---c----cccceEE
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---N----LMVKVSG   73 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~----~~~~~i~   73 (212)
                      ++++++.|+++.+++|+||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++..   .    ..++.++
T Consensus         1 i~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~i~   79 (206)
T TIGR03608         1 LKNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKF-DSGQVYLNGKETPPLNSKKASKFRREKLG   79 (206)
T ss_pred             CcceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-CCeEEEECCEEccccchhhHHHHHHhCee
Confidence            57999999988899999999999999999999999999999999999998 69999999998531   1    2346799


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeE
Q psy8250          74 FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGF  153 (212)
Q Consensus        74 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~ll  153 (212)
                      |++|++.+++.+|++||+.+.....   ........+++.++++.+|+.+..++++.+||+||+||++|||||+.+|+++
T Consensus        80 ~~~q~~~~~~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~ll  156 (206)
T TIGR03608        80 YLFQNFALIENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLI  156 (206)
T ss_pred             EEecchhhccCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence            9999999999999999998865432   1233445567889999999998899999999999999999999999999999


Q ss_pred             EecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHH
Q psy8250         154 VPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERA  188 (212)
Q Consensus       154 ilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~  188 (212)
                      ||||||+ ||+.++..++++|+++.++.     .+|+.+.+
T Consensus       157 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~  197 (206)
T TIGR03608       157 LADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVA  197 (206)
T ss_pred             EEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence            9999999 99999999999999987543     27998754

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.8e-47  Score=316.23  Aligned_cols=206  Identities=22%  Similarity=0.324  Sum_probs=172.5

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCC-----CCCceEEEECCEeCCc-----ccccc
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ-----GDVDGQILLNGLEVEK-----NLMVK   70 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~-----p~~~G~I~~~g~~~~~-----~~~~~   70 (212)
                      ++++++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+..     | ++|+|.++|+++..     ..+++
T Consensus         9 ~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~-~~G~i~~~g~~i~~~~~~~~~~~~   87 (253)
T PRK14242          9 ARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGAR-VEGEILLDGENIYDPHVDVVELRR   87 (253)
T ss_pred             EeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCC-CceEEEECCEEccccccCHHHHhh
Confidence            4689999988889999999999999999999999999999999999864     4 59999999998742     12356


Q ss_pred             eEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc----ccCCCCCCCChHHHHHHHHHHHH
Q psy8250          71 VSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK----CKNSVLNVLSGGERKRVALAVQT  146 (212)
Q Consensus        71 ~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----~~~~~~~~LSgGqrqRv~lA~al  146 (212)
                      .++|++|++.+++ .|+.||+.+.......  .......+++.++++.+++.+    ..++++.+||||||||++|||||
T Consensus        88 ~i~~v~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral  164 (253)
T PRK14242         88 RVGMVFQKPNPFP-KSIFENVAYGLRVNGV--KDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARAL  164 (253)
T ss_pred             cEEEEecCCCCCc-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHH
Confidence            7999999998887 5999999886543211  123344567888999999843    46888999999999999999999


Q ss_pred             hhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         147 IIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       147 ~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      +.+|++|||||||+ ||+.++..+.++|++++...    .+|+++.+... +  .+|++|+++..|+++++.
T Consensus       165 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  236 (253)
T PRK14242        165 AVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIF  236 (253)
T ss_pred             hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            99999999999999 99999999999999996532    37999988653 3  478899999999988764

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.7e-47  Score=327.69  Aligned_cols=210  Identities=15%  Similarity=0.162  Sum_probs=173.2

Q ss_pred             Cccccccc----CCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCC---CCceEEEECCEeCCcc---c---
Q psy8250           1 METFHPLF----GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQG---DVDGQILLNGLEVEKN---L---   67 (212)
Q Consensus         1 ~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p---~~~G~I~~~g~~~~~~---~---   67 (212)
                      ++++++.|    +...+++||||+|.+||++||+||||||||||+++|+|++.|   .++|+|+++|+++...   .   
T Consensus         6 v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~   85 (330)
T PRK15093          6 IRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRK   85 (330)
T ss_pred             EeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHH
Confidence            46899999    445799999999999999999999999999999999999863   1589999999988532   1   


Q ss_pred             -ccceEEEEcCCCC--CCCCCCHHHHHHHHHhhhcccC---CCHHHHHHHHHHHHHHcCCcc---ccCCCCCCCChHHHH
Q psy8250          68 -MVKVSGFVPQHDL--TVDTLTVHEHMTLMARLKMDRN---LHHVERARTVDALLKELGLLK---CKNSVLNVLSGGERK  138 (212)
Q Consensus        68 -~~~~i~~v~Q~~~--~~~~ltv~e~l~~~~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~---~~~~~~~~LSgGqrq  138 (212)
                       +++.++||||++.  +++.+|+.+++.+.........   ....+...++.++++.+||.+   ..++++.+|||||+|
T Consensus        86 ~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~Q  165 (330)
T PRK15093         86 LVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQ  165 (330)
T ss_pred             HhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHH
Confidence             1346999999985  5788999999976432211000   011234567889999999974   468999999999999


Q ss_pred             HHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHHH---HHHHhcCeeecCCchh
Q psy8250         139 RVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR------NLHHVERARTVD---ALLKELGLLKCRPADE  208 (212)
Q Consensus       139 Rv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~~---~~l~~g~~~~~~~~~~  208 (212)
                      ||+|||||+.+|++||+||||+ ||+.++.+++++|++++++.      +|||++.+..+.   .+|++|++++.|++++
T Consensus       166 Rv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~g~~~~  245 (330)
T PRK15093        166 KVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKE  245 (330)
T ss_pred             HHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence            9999999999999999999999 99999999999999998752      379999987643   4889999999999888


Q ss_pred             hh
Q psy8250         209 LN  210 (212)
Q Consensus       209 ~~  210 (212)
                      +.
T Consensus       246 i~  247 (330)
T PRK15093        246 LV  247 (330)
T ss_pred             HH
Confidence            74

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-47  Score=320.84  Aligned_cols=209  Identities=22%  Similarity=0.304  Sum_probs=176.0

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEEEcC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGFVPQ   77 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~v~Q   77 (212)
                      ++++++.|+++.+|+++||++.+|++++|+||||||||||+++|+|+++| ++|+|.++|+++...   ..++.++|+||
T Consensus        10 i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~v~q   88 (265)
T PRK10253         10 GEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP-AHGHVWLDGEHIQHYASKEVARRIGLLAQ   88 (265)
T ss_pred             EEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCC-CCcEEEECCEEhhhCCHHHHhhheEEeec
Confidence            46899999988899999999999999999999999999999999999988 699999999987432   23456999999


Q ss_pred             CCCCCCCCCHHHHHHHHHhhhcc-cCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250          78 HDLTVDTLTVHEHMTLMARLKMD-RNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ  156 (212)
Q Consensus        78 ~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD  156 (212)
                      ++.+++.+|+++|+.+....... ...........+.++++.+++.+..++++.+||||||||++|||||+.+|+++|||
T Consensus        89 ~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllD  168 (265)
T PRK10253         89 NATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLD  168 (265)
T ss_pred             cCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEe
Confidence            99999889999999864211100 00011233456789999999998899999999999999999999999999999999


Q ss_pred             CCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         157 HDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       157 EPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      |||+ ||+.++..++++|.+++++ .     .+|+++.+... +  .+|++|+++..|+++++.
T Consensus       169 EPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  232 (265)
T PRK10253        169 EPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV  232 (265)
T ss_pred             CccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            9999 9999999999999998764 2     27999987664 3  478899999999988764

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.3e-47  Score=320.59  Aligned_cols=206  Identities=24%  Similarity=0.314  Sum_probs=175.1

Q ss_pred             CcccccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc-----ccccceEEE
Q psy8250           1 METFHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-----NLMVKVSGF   74 (212)
Q Consensus         1 ~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~-----~~~~~~i~~   74 (212)
                      ++++++.|+ .+.+++|+||+|.+||+++|+||||||||||+++|+|+++| .+|+|+++|.++..     ..+++.++|
T Consensus         4 ~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~~~i~~   82 (275)
T PRK13639          4 TRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKP-TSGEVLIKGEPIKYDKKSLLEVRKTVGI   82 (275)
T ss_pred             EEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CccEEEECCEECccccchHHHHHhheEE
Confidence            468999996 46799999999999999999999999999999999999988 69999999998742     123567999


Q ss_pred             EcCCCC-CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeE
Q psy8250          75 VPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGF  153 (212)
Q Consensus        75 v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~ll  153 (212)
                      +||++. .+...|+.||+.+.....   .....+...++.++++.+++.++.++++.+|||||+||++|||||+.+|+++
T Consensus        83 v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~ll  159 (275)
T PRK13639         83 VFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEII  159 (275)
T ss_pred             EeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            999973 334579999998754321   1234445567889999999999999999999999999999999999999999


Q ss_pred             EecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         154 VPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       154 ilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      ||||||+ ||+.++..++++|++++++.     .+|+++.+... +  .+|++|+++++|+++++.
T Consensus       160 llDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  225 (275)
T PRK13639        160 VLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVF  225 (275)
T ss_pred             EEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            9999999 99999999999999997643     27999988754 3  478899999999988864

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=100.00  E-value=2.5e-47  Score=308.46  Aligned_cols=197  Identities=24%  Similarity=0.344  Sum_probs=165.9

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHD   79 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~   79 (212)
                      ++++++.|+++.  .|+||++.+|++++|+||||||||||+++|+|+++| ++|+|+++|.++... ..++.++|++|++
T Consensus         3 ~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~-~~G~i~~~g~~~~~~~~~~~~i~~~~q~~   79 (211)
T cd03298           3 LDKIRFSYGEQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETP-QSGRVLINGVDVTAAPPADRPVSMLFQEN   79 (211)
T ss_pred             EEeEEEEeCCEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEEcCcCCHhHccEEEEeccc
Confidence            468999998654  399999999999999999999999999999999998 699999999987532 2346799999999


Q ss_pred             CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCC
Q psy8250          80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDL  159 (212)
Q Consensus        80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt  159 (212)
                      .+++.+|+.||+.+......  . ........+.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||
T Consensus        80 ~~~~~~tv~enl~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~  156 (211)
T cd03298          80 NLFAHLTVEQNVGLGLSPGL--K-LTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPF  156 (211)
T ss_pred             ccCCCCcHHHHHhccccccc--C-ccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence            99999999999987533111  1 11234556889999999998889999999999999999999999999999999999


Q ss_pred             C-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeec
Q psy8250         160 T-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKC  203 (212)
Q Consensus       160 ~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~  203 (212)
                      + ||+.++..++++|++++.+ .     .+|+++.+... +  .+|++|+++..
T Consensus       157 ~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~  210 (211)
T cd03298         157 AALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQ  210 (211)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeec
Confidence            9 9999999999999998754 2     27999988653 3  46778887654

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.5e-47  Score=322.82  Aligned_cols=206  Identities=21%  Similarity=0.273  Sum_probs=176.0

Q ss_pred             CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCc---eEEEECCEeCCcc---cccceE
Q psy8250           1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVD---GQILLNGLEVEKN---LMVKVS   72 (212)
Q Consensus         1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~---G~I~~~g~~~~~~---~~~~~i   72 (212)
                      ++++++.|++  +.+++++||+|.+|+++||+||||||||||+++|+|+++| ++   |+|.++|.++...   ..++.+
T Consensus         8 i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p-~~g~~G~i~i~g~~~~~~~~~~~~~~i   86 (282)
T PRK13640          8 FKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLP-DDNPNSKITVDGITLTAKTVWDIREKV   86 (282)
T ss_pred             EEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCC-CCCCCcEEEECCEECCcCCHHHHHhhe
Confidence            4688999964  4699999999999999999999999999999999999988 46   9999999998542   235679


Q ss_pred             EEEcCCCC-CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCC
Q psy8250          73 GFVPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQS  151 (212)
Q Consensus        73 ~~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~  151 (212)
                      ||+||++. +++..|++||+.+.....   .....+..+++.++++.+|+.+..++++.+|||||+||++|||||+.+|+
T Consensus        87 g~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~  163 (282)
T PRK13640         87 GIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPK  163 (282)
T ss_pred             EEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence            99999984 567789999998754332   23344556678899999999999999999999999999999999999999


Q ss_pred             eEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHHH--HHHHhcCeeecCCchhhh
Q psy8250         152 GFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTVD--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       152 llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~  210 (212)
                      +|||||||+ ||+.++..+.++|++++.+ .     .+|+++.+..++  .+|++|++++.|+++++.
T Consensus       164 llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  231 (282)
T PRK13640        164 IIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIF  231 (282)
T ss_pred             EEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            999999999 9999999999999999764 2     279998875433  478899999999988764

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=100.00  E-value=3.7e-47  Score=309.96  Aligned_cols=199  Identities=19%  Similarity=0.287  Sum_probs=172.9

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL   80 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~   80 (212)
                      ++++++.|+++.+|+++||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++.... .+.++|+||++.
T Consensus         3 l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~~~~~~~~~-~~~~~~~~q~~~   80 (223)
T TIGR03740         3 TKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRP-TSGEIIFDGHPWTRKD-LHKIGSLIESPP   80 (223)
T ss_pred             EEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEeccccc-cccEEEEcCCCC
Confidence            46899999888899999999999999999999999999999999999988 6999999999875332 246899999999


Q ss_pred             CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC
Q psy8250          81 TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT  160 (212)
Q Consensus        81 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~  160 (212)
                      +++.+|++||+.+......   ..    ...+.++++.+|+.+..++++.+||+||+||++||||++.+|+++||||||+
T Consensus        81 ~~~~~t~~~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~  153 (223)
T TIGR03740        81 LYENLTARENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTN  153 (223)
T ss_pred             ccccCCHHHHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcc
Confidence            9998999999987654321   11    2457889999999988999999999999999999999999999999999999


Q ss_pred             -CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchh
Q psy8250         161 -VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADE  208 (212)
Q Consensus       161 -lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~  208 (212)
                       ||+.++..++++|++++.++     .+|+.+.+... +  .+|++|++...|++++
T Consensus       154 ~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~  210 (223)
T TIGR03740       154 GLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK  210 (223)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence             99999999999999997543     27999988654 3  4688999999888764

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=100.00  E-value=1.9e-47  Score=318.88  Aligned_cols=210  Identities=22%  Similarity=0.322  Sum_probs=175.9

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCC--CceEEEECCEeCCcc--------cccc
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD--VDGQILLNGLEVEKN--------LMVK   70 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~--~~G~I~~~g~~~~~~--------~~~~   70 (212)
                      ++++++.|+++.+|+++||++.+|++++|+||||||||||+++|+|+++|+  .+|+|+++|.++...        ..++
T Consensus         7 ~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~   86 (262)
T PRK09984          7 VEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRA   86 (262)
T ss_pred             EeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHh
Confidence            468999999889999999999999999999999999999999999999873  259999999987431        2245


Q ss_pred             eEEEEcCCCCCCCCCCHHHHHHHHHhhhcc-----cCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHH
Q psy8250          71 VSGFVPQHDLTVDTLTVHEHMTLMARLKMD-----RNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQ  145 (212)
Q Consensus        71 ~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~a  145 (212)
                      .++|+||++.+++.+|+++|+.+.......     ..........++.++++.+|+.+..++.+.+||+|||||++||||
T Consensus        87 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lara  166 (262)
T PRK09984         87 NTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARA  166 (262)
T ss_pred             heEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHH
Confidence            689999999999999999999875321000     001112345578899999999888899999999999999999999


Q ss_pred             HhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         146 TIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       146 l~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      |+.+|++|||||||+ ||+.++..+.++|++++.+ +     .+|+++.+... +  .+|++|+++..|+++++.
T Consensus       167 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~  241 (262)
T PRK09984        167 LMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQFD  241 (262)
T ss_pred             HhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHhc
Confidence            999999999999999 9999999999999999754 2     37999987654 2  478899999999988863

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.4e-47  Score=318.75  Aligned_cols=210  Identities=20%  Similarity=0.288  Sum_probs=179.9

Q ss_pred             CcccccccCC----cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCC-CC---CceEEEECCEeCCcc------
Q psy8250           1 METFHPLFGD----TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ-GD---VDGQILLNGLEVEKN------   66 (212)
Q Consensus         1 ~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~-p~---~~G~I~~~g~~~~~~------   66 (212)
                      ++||+.+|..    ..+++||||++++||++||+|+|||||||+.++|+|+++ |.   .+|+|.|+|+++...      
T Consensus         4 v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~   83 (316)
T COG0444           4 VKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELR   83 (316)
T ss_pred             EeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHH
Confidence            4788888853    469999999999999999999999999999999999997 42   479999999987431      


Q ss_pred             -cccceEEEEcCCC--CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc---ccCCCCCCCChHHHHHH
Q psy8250          67 -LMVKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK---CKNSVLNVLSGGERKRV  140 (212)
Q Consensus        67 -~~~~~i~~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~---~~~~~~~~LSgGqrqRv  140 (212)
                       .+.+.|+|+||+|  .+.|.+|+.+.+......+.... .+++..+++.++|+.+|+.+   ..+.+|++|||||||||
T Consensus        84 ~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~-~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV  162 (316)
T COG0444          84 KIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGL-SKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRV  162 (316)
T ss_pred             hhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHH
Confidence             1346799999997  57788999999887776543210 35667888999999999974   67999999999999999


Q ss_pred             HHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHHH---HHHHhcCeeecCCchhhh
Q psy8250         141 ALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR------NLHHVERARTVD---ALLKELGLLKCRPADELN  210 (212)
Q Consensus       141 ~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~  210 (212)
                      .||.||+.+|++||+||||+ ||+..+.+++++|++++++.      .|||+..++..+   .+|+.|++++.|+++++-
T Consensus       163 ~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~i~  242 (316)
T COG0444         163 MIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIF  242 (316)
T ss_pred             HHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHHHh
Confidence            99999999999999999999 99999999999999999864      389999887753   589999999999998874


Q ss_pred             c
Q psy8250         211 R  211 (212)
Q Consensus       211 ~  211 (212)
                      .
T Consensus       243 ~  243 (316)
T COG0444         243 K  243 (316)
T ss_pred             c
Confidence            3

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.8e-47  Score=321.97  Aligned_cols=206  Identities=18%  Similarity=0.259  Sum_probs=175.4

Q ss_pred             CcccccccCC------cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc----ccccc
Q psy8250           1 METFHPLFGD------TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK----NLMVK   70 (212)
Q Consensus         1 ~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~----~~~~~   70 (212)
                      ++++++.|++      +.+|+++||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++..    ...++
T Consensus         7 ~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~G~i~i~g~~i~~~~~~~~~~~   85 (280)
T PRK13633          7 CKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIP-SEGKVYVDGLDTSDEENLWDIRN   85 (280)
T ss_pred             EeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEeccccccHHHHhh
Confidence            4689999963      4699999999999999999999999999999999999998 69999999998853    22456


Q ss_pred             eEEEEcCCCC-CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhC
Q psy8250          71 VSGFVPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIV  149 (212)
Q Consensus        71 ~i~~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~  149 (212)
                      .++|+||++. .+...|+.+|+.|.....   +....+..+.+.++++.+|+.+..++++.+||||||||++|||||+.+
T Consensus        86 ~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~  162 (280)
T PRK13633         86 KAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMR  162 (280)
T ss_pred             heEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence            7999999974 233469999998865432   223445566789999999999999999999999999999999999999


Q ss_pred             CCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHHH--HHHHhcCeeecCCchhhh
Q psy8250         150 QSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTVD--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       150 p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~  210 (212)
                      |+++||||||+ ||+.++..++++|++++++ +     .+|+++.+..++  .+|++|+++..|+++++.
T Consensus       163 p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  232 (280)
T PRK13633        163 PECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF  232 (280)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence            99999999999 9999999999999999754 3     279999876543  478899999999988864

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.2e-47  Score=314.99  Aligned_cols=201  Identities=25%  Similarity=0.335  Sum_probs=172.4

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEcC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQ   77 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~Q   77 (212)
                      ++++++.|+++.+++|+||+|.+|++++|+||||||||||+++|+|+++| ++|+|.++|.++..   ..+++.++|+||
T Consensus         6 ~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~~~~~~~i~~~~q   84 (241)
T PRK14250          6 FKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDP-TEGSILIDGVDIKTIDVIDLRRKIGMVFQ   84 (241)
T ss_pred             EEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEEhhhcChHHhhhcEEEEec
Confidence            46889999888899999999999999999999999999999999999998 69999999998743   234567999999


Q ss_pred             CCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250          78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ  156 (212)
Q Consensus        78 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD  156 (212)
                      ++.+++ .|+.||+.+.....   .    ....++.++++.+++. +..++++.+||||||||++|||||+.+|++||||
T Consensus        85 ~~~~~~-~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD  156 (241)
T PRK14250         85 QPHLFE-GTVKDNIEYGPMLK---G----EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLD  156 (241)
T ss_pred             Cchhch-hhHHHHHhcchhhc---C----cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            998886 69999988653321   1    1134577899999996 5788999999999999999999999999999999


Q ss_pred             CCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         157 HDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       157 EPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      |||+ ||+.+++.+.++|++++++ +     .+|+.+.+... +  .+|++|+++..|+++++.
T Consensus       157 EPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  220 (241)
T PRK14250        157 EPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFF  220 (241)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHh
Confidence            9999 9999999999999998764 2     27999987654 3  478899999999988774

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.6e-47  Score=316.92  Aligned_cols=207  Identities=22%  Similarity=0.315  Sum_probs=173.7

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCC--C--CCceEEEECCEeCCc-----ccccce
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ--G--DVDGQILLNGLEVEK-----NLMVKV   71 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~--p--~~~G~I~~~g~~~~~-----~~~~~~   71 (212)
                      ++++++.|++..+|+|+||+|++|++++|+||||||||||+++|+|++.  |  +++|+|.++|.++..     ..+++.
T Consensus        16 ~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~   95 (260)
T PRK10744         16 VRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAK   95 (260)
T ss_pred             EEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcc
Confidence            4688999988889999999999999999999999999999999999986  2  159999999998742     124567


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHHh
Q psy8250          72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQTI  147 (212)
Q Consensus        72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al~  147 (212)
                      ++|+||++.+++ .|+++|+.+......  .....+..+++.++++.+++.    +..++++.+|||||+||++|||||+
T Consensus        96 i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~  172 (260)
T PRK10744         96 VGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIA  172 (260)
T ss_pred             eEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence            999999998887 799999987654321  123344456788999999974    4578889999999999999999999


Q ss_pred             hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      .+|++|||||||+ ||+.++..+.++|++++...    .+|+++.+... +  .+|++|+++..|+++++.
T Consensus       173 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  243 (260)
T PRK10744        173 IRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIF  243 (260)
T ss_pred             CCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            9999999999999 99999999999999996432    27999987654 3  478899999999988764

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.7e-47  Score=345.75  Aligned_cols=209  Identities=18%  Similarity=0.241  Sum_probs=178.0

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCC-CCceEEEECCEeCCccc----ccceEEEE
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQG-DVDGQILLNGLEVEKNL----MVKVSGFV   75 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p-~~~G~I~~~g~~~~~~~----~~~~i~~v   75 (212)
                      ++++++.|+++.+|+||||+|++|++++|+||||||||||+|+|+|+++| +++|+|+++|.++....    .++.++|+
T Consensus         8 ~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v   87 (506)
T PRK13549          8 MKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAII   87 (506)
T ss_pred             EeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEE
Confidence            46899999988899999999999999999999999999999999999885 25999999999885321    24569999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEe
Q psy8250          76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVP  155 (212)
Q Consensus        76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llil  155 (212)
                      ||++.+++.+|++||+.++...+............++.++++.+++.+..++++.+||||||||++|||||+.+|++|||
T Consensus        88 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllL  167 (506)
T PRK13549         88 HQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLIL  167 (506)
T ss_pred             EeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            99999999999999998864322101112334456788999999998889999999999999999999999999999999


Q ss_pred             cCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhh
Q psy8250         156 QHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADEL  209 (212)
Q Consensus       156 DEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~  209 (212)
                      ||||+ ||+.++..++++|.+++++.     .+||++.+... +  .+|++|+++..|+++++
T Consensus       168 DEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  230 (506)
T PRK13549        168 DEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGM  230 (506)
T ss_pred             eCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccC
Confidence            99999 99999999999999997543     37999988764 3  47889999999988765

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.9e-47  Score=321.29  Aligned_cols=206  Identities=18%  Similarity=0.236  Sum_probs=171.8

Q ss_pred             CcccccccCCc-----ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc--------cc
Q psy8250           1 METFHPLFGDT-----NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK--------NL   67 (212)
Q Consensus         1 ~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~--------~~   67 (212)
                      ++++++.|+++     .+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++..        ..
T Consensus         9 i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~~~~~~~~   87 (289)
T PRK13645          9 LDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS-ETGQTIVGDYAIPANLKKIKEVKR   87 (289)
T ss_pred             EEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEEccccccccccHHH
Confidence            46899999764     499999999999999999999999999999999999998 69999999998731        12


Q ss_pred             ccceEEEEcCCCCC-CCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHH
Q psy8250          68 MVKVSGFVPQHDLT-VDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQ  145 (212)
Q Consensus        68 ~~~~i~~v~Q~~~~-~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~a  145 (212)
                      +++.++|++|++.. +...|+.||+.+.....   ..........+.++++.+++. ...++++.+||||||||++||||
T Consensus        88 ~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lara  164 (289)
T PRK13645         88 LRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGI  164 (289)
T ss_pred             HhccEEEEEeCcchhhhhhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHH
Confidence            35679999999732 23459999998764322   123334445678899999994 67899999999999999999999


Q ss_pred             HhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         146 TIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       146 l~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      |+.+|++|||||||+ ||+.++..++++|++++++ .     .+|+++.+... +  .+|++|+++..|+++++.
T Consensus       165 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  239 (289)
T PRK13645        165 IAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIF  239 (289)
T ss_pred             HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            999999999999999 9999999999999998754 2     27999987654 3  478899999999988764

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=100.00  E-value=1.5e-47  Score=345.77  Aligned_cols=209  Identities=19%  Similarity=0.228  Sum_probs=178.2

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---c-ccceEEEEc
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---L-MVKVSGFVP   76 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~-~~~~i~~v~   76 (212)
                      +++++++|+++.+|+|+||+|.+|+++||+||||||||||+|+|+|+++| ++|+|.++|.++...   . .++.++|+|
T Consensus         7 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-~~G~i~~~g~~~~~~~~~~~~~~~i~~v~   85 (501)
T PRK10762          7 LKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTR-DAGSILYLGKEVTFNGPKSSQEAGIGIIH   85 (501)
T ss_pred             EeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEECCCCCHHHHHhCCEEEEE
Confidence            46899999988899999999999999999999999999999999999998 699999999987432   1 245699999


Q ss_pred             CCCCCCCCCCHHHHHHHHHhhhcc-cCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEe
Q psy8250          77 QHDLTVDTLTVHEHMTLMARLKMD-RNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVP  155 (212)
Q Consensus        77 Q~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llil  155 (212)
                      |++.+++.+|++||+.++...+.. ......+...++.++++.+|+.+..++++.+||||||||++|||||+.+|++|||
T Consensus        86 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllL  165 (501)
T PRK10762         86 QELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIM  165 (501)
T ss_pred             cchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            999999999999999886432110 1122334456788999999999888999999999999999999999999999999


Q ss_pred             cCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         156 QHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       156 DEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      ||||+ ||+.++..++++|++++.+.     .+||++.+... +  .+|++|+++..|+++++.
T Consensus       166 DEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  229 (501)
T PRK10762        166 DEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT  229 (501)
T ss_pred             eCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence            99999 99999999999999997653     27999988764 3  478899999999887653

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.4e-47  Score=315.48  Aligned_cols=208  Identities=21%  Similarity=0.308  Sum_probs=174.2

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCC----CCceEEEECCEeCCc-----ccccce
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQG----DVDGQILLNGLEVEK-----NLMVKV   71 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p----~~~G~I~~~g~~~~~-----~~~~~~   71 (212)
                      ++++++.|++..+|+++||+|++|++++|+||||||||||+++|+|++.|    +++|+|.++|.++..     ..+++.
T Consensus         7 i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~   86 (258)
T PRK14241          7 VKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRT   86 (258)
T ss_pred             EeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcc
Confidence            47899999888899999999999999999999999999999999999864    159999999998742     134567


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHHh
Q psy8250          72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQTI  147 (212)
Q Consensus        72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al~  147 (212)
                      ++|++|++.+++.+|++||+.+....+.  ........+.+.++++.+++.    +..++++.+||||||||++|||||+
T Consensus        87 i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~  164 (258)
T PRK14241         87 IGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIA  164 (258)
T ss_pred             eEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence            9999999999999999999987654321  112334456778899999984    4678889999999999999999999


Q ss_pred             hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHH------hcCeeecCCchhhh
Q psy8250         148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLK------ELGLLKCRPADELN  210 (212)
Q Consensus       148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~------~g~~~~~~~~~~~~  210 (212)
                      .+|+++||||||+ ||+.++..++++|++++...    .+|+++.+... +  .+|+      +|++++.|+++++.
T Consensus       165 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~~  241 (258)
T PRK14241        165 VEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEKIF  241 (258)
T ss_pred             cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecCCHHHHH
Confidence            9999999999999 99999999999999986432    37999988654 3  3454      79999999988763

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=100.00  E-value=5.9e-47  Score=316.87  Aligned_cols=208  Identities=18%  Similarity=0.286  Sum_probs=174.3

Q ss_pred             CcccccccCC---------cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cc
Q psy8250           1 METFHPLFGD---------TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LM   68 (212)
Q Consensus         1 ~~~l~~~~~~---------~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~   68 (212)
                      +++++++|++         ..+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++...   ..
T Consensus         7 ~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~   85 (267)
T PRK15112          7 VRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP-TSGELLIDDHPLHFGDYSYR   85 (267)
T ss_pred             EeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCC-CCCEEEECCEECCCCchhhH
Confidence            4689999962         4699999999999999999999999999999999999998 699999999987531   22


Q ss_pred             cceEEEEcCCCC--CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHH
Q psy8250          69 VKVSGFVPQHDL--TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQ  145 (212)
Q Consensus        69 ~~~i~~v~Q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~a  145 (212)
                      ++.++|+||++.  +++.+|+.+++.+......  ........+.+.++++.+|+. ...++++.+||||||||++||||
T Consensus        86 ~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lara  163 (267)
T PRK15112         86 SQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARA  163 (267)
T ss_pred             hccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHH
Confidence            456999999975  5677899999987654321  122334456788999999994 67788899999999999999999


Q ss_pred             HhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250         146 TIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       146 l~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      |+.+|+++||||||+ ||+.+++.+.++|.+++++ .     .+|+++.+... +  .+|++|+++..|+++++.+
T Consensus       164 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  239 (267)
T PRK15112        164 LILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLA  239 (267)
T ss_pred             HHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHhc
Confidence            999999999999999 9999999999999999764 2     27999988764 3  4688999999999887753

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=100.00  E-value=8.7e-47  Score=309.70  Aligned_cols=207  Identities=26%  Similarity=0.316  Sum_probs=178.9

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHD   79 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~   79 (212)
                      ++++++.|+++.+++++||++++|++++|+||||||||||+++|+|+++| .+|+|.++|.++... ..++.++|++|++
T Consensus         3 ~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~-~~G~i~~~g~~~~~~~~~~~~i~~~~q~~   81 (232)
T cd03300           3 LENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETP-TSGEILLDGKDITNLPPHKRPVNTVFQNY   81 (232)
T ss_pred             EEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEEcCcCChhhcceEEEeccc
Confidence            47899999888899999999999999999999999999999999999998 699999999988542 2346799999999


Q ss_pred             CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCC
Q psy8250          80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDL  159 (212)
Q Consensus        80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt  159 (212)
                      .+++.+|+.+|+.+....+.   .........+.++++.+|+.+..++.+.+||+||+||++|||||+.+|+++||||||
T Consensus        82 ~~~~~~t~~~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~  158 (232)
T cd03300          82 ALFPHLTVFENIAFGLRLKK---LPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPL  158 (232)
T ss_pred             ccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence            99989999999987654321   223344557788999999998899999999999999999999999999999999999


Q ss_pred             C-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250         160 T-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       160 ~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      + ||+.++..++++|++++++ .     .+|+.+.+... +  .++++|++...|+++++.+
T Consensus       159 ~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~  220 (232)
T cd03300         159 GALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYE  220 (232)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHh
Confidence            9 9999999999999999764 2     26999887654 3  4778999999998887653

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.6e-48  Score=304.96  Aligned_cols=209  Identities=24%  Similarity=0.331  Sum_probs=188.2

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEcC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQ   77 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~Q   77 (212)
                      +++++|.|+++.+++++|++|++|.+++|+|||||||||||.+++.++.+ ++|+|+++|.++..   ..+.+.++.+-|
T Consensus         4 i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~-d~G~i~i~g~~~~~~~s~~LAk~lSILkQ   82 (252)
T COG4604           4 IENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKK-DSGEITIDGLELTSTPSKELAKKLSILKQ   82 (252)
T ss_pred             ehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccc-cCceEEEeeeecccCChHHHHHHHHHHHh
Confidence            57899999999999999999999999999999999999999999999998 69999999999854   356778899999


Q ss_pred             CCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecC
Q psy8250          78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQH  157 (212)
Q Consensus        78 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDE  157 (212)
                      +..+...+||+|-+.|+..-+ .++....+.+..+.++++.++|.+..+++..+||||||||..||+.++++.+.++|||
T Consensus        83 ~N~i~~rlTV~dLv~FGRfPY-SqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDE  161 (252)
T COG4604          83 ENHINSRLTVRDLVGFGRFPY-SQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDE  161 (252)
T ss_pred             hchhhheeEHHHHhhcCCCcc-cCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecC
Confidence            998889999999999975432 3444567788899999999999999999999999999999999999999999999999


Q ss_pred             CCC-CChhhHHHHHHHHHHHHhhcC------cchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250         158 DLT-VDTLTVHEHMTLMARLKMDRN------LHHVERARTV-D--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       158 Pt~-lD~~~~~~~~~~l~~l~~~~~------~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      |.+ ||.....+++++|++++++.+      .||+++|..+ +  ..+++|+++..|+||++-+
T Consensus       162 PLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~  225 (252)
T COG4604         162 PLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQ  225 (252)
T ss_pred             cccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcC
Confidence            999 999999999999999998753      6999999654 4  4688999999999999743

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.6e-47  Score=315.61  Aligned_cols=208  Identities=19%  Similarity=0.289  Sum_probs=173.6

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCC----CCceEEEECCEeCCc-----ccccce
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQG----DVDGQILLNGLEVEK-----NLMVKV   71 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p----~~~G~I~~~g~~~~~-----~~~~~~   71 (212)
                      ++++++.|+++.+|+|+||+|++|++++|+||||||||||+++|+|+++|    +++|+|+++|+++..     ..+++.
T Consensus        22 ~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~  101 (267)
T PRK14235         22 ARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRAR  101 (267)
T ss_pred             EEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhc
Confidence            36899999988899999999999999999999999999999999999874    259999999998742     124567


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc----ccCCCCCCCChHHHHHHHHHHHHh
Q psy8250          72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK----CKNSVLNVLSGGERKRVALAVQTI  147 (212)
Q Consensus        72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----~~~~~~~~LSgGqrqRv~lA~al~  147 (212)
                      ++|++|++.+++. |+.||+.+....+.. ..........+.++++.+++.+    ..++++.+||||||||++|||||+
T Consensus       102 i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~  179 (267)
T PRK14235        102 VGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIA  179 (267)
T ss_pred             eEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHH
Confidence            9999999988875 999999876543211 0122334566788999999953    467889999999999999999999


Q ss_pred             hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      .+|++|||||||+ ||+.+++.+.++|++++...    .+|+++.+... +  .+|++|+++..|+++++.
T Consensus       180 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  250 (267)
T PRK14235        180 VSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMF  250 (267)
T ss_pred             cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence            9999999999999 99999999999999986532    27999988664 3  468899999999988763

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-46  Score=312.44  Aligned_cols=208  Identities=23%  Similarity=0.336  Sum_probs=174.6

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCC--CC--CceEEEECCEeCCc-----ccccce
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ--GD--VDGQILLNGLEVEK-----NLMVKV   71 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~--p~--~~G~I~~~g~~~~~-----~~~~~~   71 (212)
                      ++++++.|+++.+|+|+||+|++|++++|+||||||||||+++|+|+++  |.  ++|+|+++|.++..     ...++.
T Consensus         7 ~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~   86 (252)
T PRK14256          7 LEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRR   86 (252)
T ss_pred             EEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhcc
Confidence            4789999988889999999999999999999999999999999999985  31  48999999998742     134567


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc----ccCCCCCCCChHHHHHHHHHHHHh
Q psy8250          72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK----CKNSVLNVLSGGERKRVALAVQTI  147 (212)
Q Consensus        72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----~~~~~~~~LSgGqrqRv~lA~al~  147 (212)
                      ++|+||++.+++.+|+.||+.+......  .....+...++.++++.+++..    ..++.+.+||||||||++|||||+
T Consensus        87 i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~  164 (252)
T PRK14256         87 VGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIA  164 (252)
T ss_pred             EEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHh
Confidence            9999999999999999999987544321  1123334556788999999853    567889999999999999999999


Q ss_pred             hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      .+|++|||||||+ ||+.++..++++|++++...    .+|+++.+... +  .+|++|+++..|+++++.
T Consensus       165 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  235 (252)
T PRK14256        165 VKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIF  235 (252)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence            9999999999999 99999999999999997643    26999988654 3  478899999999988764

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.9e-47  Score=318.95  Aligned_cols=206  Identities=21%  Similarity=0.277  Sum_probs=175.9

Q ss_pred             CcccccccCC---cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEE
Q psy8250           1 METFHPLFGD---TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGF   74 (212)
Q Consensus         1 ~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~   74 (212)
                      ++++++.|++   ..+|+++||+|.+||+++|+||||||||||+++|+|+++| ++|+|+++|.++...   ..++.++|
T Consensus         7 ~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~i~~~~~~~~~~~i~~   85 (277)
T PRK13642          7 VENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEE-FEGKVKIDGELLTAENVWNLRRKIGM   85 (277)
T ss_pred             EEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCCEEEECCEECCcCCHHHHhcceEE
Confidence            3689999974   3499999999999999999999999999999999999998 699999999987532   34567999


Q ss_pred             EcCCCC-CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeE
Q psy8250          75 VPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGF  153 (212)
Q Consensus        75 v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~ll  153 (212)
                      ++|++. .++..|+.||+.++....   .....+..+++.++++.+|+.+..++++.+|||||+||++|||||+.+|++|
T Consensus        86 v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~ll  162 (277)
T PRK13642         86 VFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEII  162 (277)
T ss_pred             EEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            999984 567789999998764322   1233444567889999999998899999999999999999999999999999


Q ss_pred             EecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHHH--HHHHhcCeeecCCchhhh
Q psy8250         154 VPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTVD--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       154 ilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~  210 (212)
                      ||||||+ ||+.++..++++|++++++ +     .+|+++.+..++  .+|++|+++..|+++++.
T Consensus       163 llDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  228 (277)
T PRK13642        163 ILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELF  228 (277)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            9999999 9999999999999999765 2     279999876433  478899999999988864

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.8e-47  Score=312.20  Aligned_cols=207  Identities=20%  Similarity=0.304  Sum_probs=173.3

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCC---CCCceEEEECCEeCCcc---cccceEEE
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ---GDVDGQILLNGLEVEKN---LMVKVSGF   74 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~---p~~~G~I~~~g~~~~~~---~~~~~i~~   74 (212)
                      ++++++.|+++.+|+|+||++++|++++|+||||||||||+++|+|++.   | ++|+|+++|+++...   ..++.++|
T Consensus         5 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~-~~G~i~~~g~~i~~~~~~~~~~~i~~   83 (246)
T PRK14269          5 TTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAK-IDGLVEIEGKDVKNQDVVALRKNVGM   83 (246)
T ss_pred             eeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCC-CceEEEECCEecccCCHHHHhhhEEE
Confidence            4789999998889999999999999999999999999999999999874   5 699999999988532   34567999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHHhhCC
Q psy8250          75 VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQTIIVQ  150 (212)
Q Consensus        75 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al~~~p  150 (212)
                      +||++.+++ .|++||+.++...+... ........++.++++.+++.    +..++++.+||||||||++|||||+.+|
T Consensus        84 ~~q~~~l~~-~tv~eni~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p  161 (246)
T PRK14269         84 VFQQPNVFV-KSIYENISYAPKLHGMI-KNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKP  161 (246)
T ss_pred             EecCCcccc-ccHHHHhhhHHhhcCcc-cChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence            999998887 69999998865432110 01233445678899999995    3467889999999999999999999999


Q ss_pred             CeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         151 SGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       151 ~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      +++||||||+ ||+.++..+.++|.+++...    .+|+++.+... +  .+|++|++++.|+++++.
T Consensus       162 ~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  229 (246)
T PRK14269        162 KLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFF  229 (246)
T ss_pred             CEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHH
Confidence            9999999999 99999999999999986532    27999987653 3  478899999999988764

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4e-47  Score=318.16  Aligned_cols=207  Identities=19%  Similarity=0.214  Sum_probs=175.9

Q ss_pred             CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250           1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV   75 (212)
Q Consensus         1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v   75 (212)
                      ++++++.|++  +.+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|+++|.++..   ..+++.++|+
T Consensus        10 i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~v   88 (269)
T PRK13648         10 FKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKV-KSGEIFYNNQAITDDNFEKLRKHIGIV   88 (269)
T ss_pred             EEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEECCcCCHHHHHhheeEE
Confidence            3688999975  3599999999999999999999999999999999999998 69999999998743   2345679999


Q ss_pred             cCCCC-CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEE
Q psy8250          76 PQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFV  154 (212)
Q Consensus        76 ~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~lli  154 (212)
                      +|++. +++..|+.+|+.+.....   ........+.+.++++.+++.+..++++.+||+|||||++|||||+.+|+++|
T Consensus        89 ~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll  165 (269)
T PRK13648         89 FQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVII  165 (269)
T ss_pred             EeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence            99985 677789999998764422   12334445678899999999988999999999999999999999999999999


Q ss_pred             ecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250         155 PQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTVD--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       155 lDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      |||||+ ||+.++..++++|++++++ +     .+|+.+.+..++  .+|++|+++..|+++++.+
T Consensus       166 LDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  231 (269)
T PRK13648        166 LDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFD  231 (269)
T ss_pred             EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhc
Confidence            999999 9999999999999998754 2     269998876543  4788999999999888643

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=100.00  E-value=9.8e-47  Score=305.70  Aligned_cols=193  Identities=26%  Similarity=0.303  Sum_probs=165.1

Q ss_pred             ccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc-------ccccceEEEE
Q psy8250           3 TFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-------NLMVKVSGFV   75 (212)
Q Consensus         3 ~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~-------~~~~~~i~~v   75 (212)
                      +|+|+|+++.+  |+||++++ ++++|+||||||||||+++|+|+++| ++|+|.++|.++..       ...++.++|+
T Consensus         5 ~l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~   80 (214)
T cd03297           5 DIEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKP-DGGTIVLNGTVLFDSRKKINLPPQQRKIGLV   80 (214)
T ss_pred             eeeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEecccccchhhhhhHhhcEEEE
Confidence            68999998766  99999999 99999999999999999999999998 69999999988742       1234579999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEe
Q psy8250          76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVP  155 (212)
Q Consensus        76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llil  155 (212)
                      +|++.+++.+|+.+|+.+.....     .......++.++++.+++.+..++++.+||||||||++|||||+.+|+++||
T Consensus        81 ~q~~~~~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll  155 (214)
T cd03297          81 FQQYALFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLL  155 (214)
T ss_pred             ecCCccCCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            99999999999999998764321     1223445688999999999888999999999999999999999999999999


Q ss_pred             cCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecC
Q psy8250         156 QHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCR  204 (212)
Q Consensus       156 DEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~  204 (212)
                      ||||+ ||+.+++.+.++|++++++ .     .+|+.+.+... +  .+|++|++++.|
T Consensus       156 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g  214 (214)
T cd03297         156 DEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG  214 (214)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence            99999 9999999999999999765 2     27999988654 3  467788887654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=100.00  E-value=1.3e-46  Score=313.29  Aligned_cols=208  Identities=19%  Similarity=0.197  Sum_probs=173.6

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEe-----CCcc---c----c
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLE-----VEKN---L----M   68 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~-----~~~~---~----~   68 (212)
                      ++++++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.+     +...   .    .
T Consensus         9 ~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~i~~~~~~~~~~~~   87 (258)
T PRK11701          9 VRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAP-DAGEVHYRMRDGQLRDLYALSEAERRRLL   87 (258)
T ss_pred             EeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCEEEECCccccccccccCCHHHHHHHh
Confidence            46899999888899999999999999999999999999999999999998 69999999987     5431   1    2


Q ss_pred             cceEEEEcCCCC--CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHH
Q psy8250          69 VKVSGFVPQHDL--TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQ  145 (212)
Q Consensus        69 ~~~i~~v~Q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~a  145 (212)
                      ++.++|+||++.  +++.+|+.+|+.+......  ..........+.++++.+++. +..++.+.+||||||||++||||
T Consensus        88 ~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~lara  165 (258)
T PRK11701         88 RTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARN  165 (258)
T ss_pred             hcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHH
Confidence            346999999974  5677899999876432211  111223455678999999997 47889999999999999999999


Q ss_pred             HhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250         146 TIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       146 l~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      |+.+|++|||||||+ ||+.++..++++|++++.+ +     .+|+.+.+... +  .+|++|+++..|+++++.+
T Consensus       166 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~  241 (258)
T PRK11701        166 LVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVLD  241 (258)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence            999999999999999 9999999999999998764 2     27999988753 3  4788999999999888753

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.1e-47  Score=343.61  Aligned_cols=208  Identities=19%  Similarity=0.233  Sum_probs=177.4

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccc----ccceEEEEc
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL----MVKVSGFVP   76 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~----~~~~i~~v~   76 (212)
                      ++++++.|+++.+++|+||+|++|+++||+||||||||||+|+|+|+++| ++|+|+++|.++....    .++.++|+|
T Consensus         8 ~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p-~~G~i~~~g~~i~~~~~~~~~~~~i~~v~   86 (510)
T PRK09700          8 MAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEP-TKGTITINNINYNKLDHKLAAQLGIGIIY   86 (510)
T ss_pred             EeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCC-CccEEEECCEECCCCCHHHHHHCCeEEEe
Confidence            36899999988899999999999999999999999999999999999998 6999999999885321    235699999


Q ss_pred             CCCCCCCCCCHHHHHHHHHhhhc-ccC---CCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCe
Q psy8250          77 QHDLTVDTLTVHEHMTLMARLKM-DRN---LHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSG  152 (212)
Q Consensus        77 Q~~~~~~~ltv~e~l~~~~~~~~-~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~l  152 (212)
                      |++.+++.+||+||+.++..... ...   ....+...++.++++.+|+.+..++++.+|||||||||+|||||+.+|++
T Consensus        87 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~l  166 (510)
T PRK09700         87 QELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKV  166 (510)
T ss_pred             ecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCE
Confidence            99999999999999987432110 001   12234456788999999999889999999999999999999999999999


Q ss_pred             EEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhh
Q psy8250         153 FVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADEL  209 (212)
Q Consensus       153 lilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~  209 (212)
                      |||||||+ ||+.++..++++|+++++++     .+||++.+... +  .+|++|+++..|+++++
T Consensus       167 llLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  232 (510)
T PRK09700        167 IIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV  232 (510)
T ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhC
Confidence            99999999 99999999999999997653     27999988764 3  47889999999988775

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=100.00  E-value=1.1e-46  Score=307.77  Aligned_cols=203  Identities=29%  Similarity=0.421  Sum_probs=168.2

Q ss_pred             CcccccccCC----cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCC---CCCceEEEECCEeCCcccccceEE
Q psy8250           1 METFHPLFGD----TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ---GDVDGQILLNGLEVEKNLMVKVSG   73 (212)
Q Consensus         1 ~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~---p~~~G~I~~~g~~~~~~~~~~~i~   73 (212)
                      ++++++.|.+    +.+++|+||+|++||+++|+||||||||||+++|+|+++   | ++|+|+++|.++.....++.++
T Consensus         6 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~-~~G~i~~~g~~~~~~~~~~~i~   84 (226)
T cd03234           6 WWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGT-TSGQILFNGQPRKPDQFQKCVA   84 (226)
T ss_pred             eecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCC-CceEEEECCEECChHHhcccEE
Confidence            4688899954    579999999999999999999999999999999999998   7 6999999999886444567799


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHH-HHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCe
Q psy8250          74 FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA-LLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSG  152 (212)
Q Consensus        74 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~-~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~l  152 (212)
                      |+||++.+++.+|+.||+.+..................+.+ +++.+++.+..++.+.+||+||+||++|||||+.+|++
T Consensus        85 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~i  164 (226)
T cd03234          85 YVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKV  164 (226)
T ss_pred             EeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCE
Confidence            99999999999999999998654322111112222334555 89999999888999999999999999999999999999


Q ss_pred             EEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchH-HHHHHH-H--HHHHhcCeeecC
Q psy8250         153 FVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHV-ERARTV-D--ALLKELGLLKCR  204 (212)
Q Consensus       153 lilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~-~~~~~~-~--~~l~~g~~~~~~  204 (212)
                      +||||||+ ||+.++..++++|++++++.     .+|+. +.+... +  .+|++|++++.|
T Consensus       165 lllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g  226 (226)
T cd03234         165 LILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG  226 (226)
T ss_pred             EEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence            99999999 99999999999999987643     26987 455543 3  478899887654

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.7e-46  Score=308.97  Aligned_cols=207  Identities=27%  Similarity=0.346  Sum_probs=178.5

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHD   79 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~   79 (212)
                      ++++++.|+++.+|+|+||++.+|++++|+||||||||||+++|+|+++| .+|+|.++|.++... ..++.++|+||++
T Consensus         3 i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~i~i~g~~~~~~~~~~~~i~~~~q~~   81 (237)
T TIGR00968         3 IANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQP-DSGRIRLNGQDATRVHARDRKIGFVFQHY   81 (237)
T ss_pred             EEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEEcCcCChhhcCEEEEecCh
Confidence            46899999988899999999999999999999999999999999999988 699999999987542 2346799999999


Q ss_pred             CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCC
Q psy8250          80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDL  159 (212)
Q Consensus        80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt  159 (212)
                      .+++.+|+.||+.+....+.   .......+.+.++++.+++.+..++.+.+||+||+||++|||||+.+|+++||||||
T Consensus        82 ~~~~~~t~~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~  158 (237)
T TIGR00968        82 ALFKHLTVRDNIAFGLEIRK---HPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPF  158 (237)
T ss_pred             hhccCCcHHHHHHhHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence            99999999999987654321   223334456789999999998899999999999999999999999999999999999


Q ss_pred             C-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250         160 T-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       160 ~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      + ||+.++..++++|.+++.+ .     .+|+.+.+... +  .+|++|+++..|+++++.+
T Consensus       159 ~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~  220 (237)
T TIGR00968       159 GALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD  220 (237)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence            9 9999999999999998764 2     27999887653 3  4788999999999888754

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=100.00  E-value=2e-46  Score=308.15  Aligned_cols=205  Identities=24%  Similarity=0.344  Sum_probs=176.2

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHD   79 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~   79 (212)
                      ++++++.|++. +++|+||+|.+|++++|+||||||||||+++|+|+++| ++|+|+++|.++... ..++.++|++|++
T Consensus         3 ~~~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p-~~G~v~i~g~~~~~~~~~~~~i~~~~q~~   80 (235)
T cd03299           3 VENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKP-DSGKILLNGKDITNLPPEKRDISYVPQNY   80 (235)
T ss_pred             eEeEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC-CceEEEECCEEcCcCChhHcCEEEEeecC
Confidence            46889999765 89999999999999999999999999999999999998 699999999987542 2356799999999


Q ss_pred             CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCC
Q psy8250          80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDL  159 (212)
Q Consensus        80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt  159 (212)
                      .+++.+|+.||+.+.....   .....+....+.++++.+++.+..++++.+|||||+||++|||||+.+|+++||||||
T Consensus        81 ~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt  157 (235)
T cd03299          81 ALFPHMTVYKNIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPF  157 (235)
T ss_pred             ccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCc
Confidence            9999999999998764332   1223445556788999999998899999999999999999999999999999999999


Q ss_pred             C-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         160 T-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       160 ~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      + ||+.++..++++|++++.+ +     .+|+++.+... +  .+|++|+++..|+++++.
T Consensus       158 ~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  218 (235)
T cd03299         158 SALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVF  218 (235)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence            9 9999999999999998764 2     27999887654 3  467899999999887764

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.6e-46  Score=304.41  Aligned_cols=199  Identities=24%  Similarity=0.320  Sum_probs=168.1

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHD   79 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~   79 (212)
                      ++++++.|+.  .+.|+||++++|++++|+||||||||||+++|+|+++| ++|+|+++|+++... ..++.++|++|++
T Consensus         3 ~~~l~~~~~~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~i~~v~q~~   79 (213)
T TIGR01277         3 LDKVRYEYEH--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEP-ASGSIKVNDQSHTGLAPYQRPVSMLFQEN   79 (213)
T ss_pred             EEeeeEEeCC--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEECCEEcccCChhccceEEEeccC
Confidence            4789999974  56899999999999999999999999999999999998 699999999987532 3456799999999


Q ss_pred             CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCC
Q psy8250          80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDL  159 (212)
Q Consensus        80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt  159 (212)
                      .+++.+|+.||+.+......  . .......++.++++.+|+.+..++.+.+||+||+||++|||||+.+|+++||||||
T Consensus        80 ~~~~~~t~~en~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt  156 (213)
T TIGR01277        80 NLFAHLTVRQNIGLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPF  156 (213)
T ss_pred             ccCCCCcHHHHHHhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence            99999999999987543211  1 11223456788999999998899999999999999999999999999999999999


Q ss_pred             C-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCC
Q psy8250         160 T-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRP  205 (212)
Q Consensus       160 ~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~  205 (212)
                      + ||+.++..+.++|.+++++ .     .+|+.+.+... +  .+|++|++++.|.
T Consensus       157 ~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~  212 (213)
T TIGR01277       157 SALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD  212 (213)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence            9 9999999999999998754 2     26999887653 3  4678999887764

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.4e-47  Score=310.03  Aligned_cols=204  Identities=25%  Similarity=0.326  Sum_probs=172.7

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHD   79 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~   79 (212)
                      ++++++.|++..  .++||++++|++++|+||||||||||+++|+|+++| ++|+|.++|+++... ..++.++|+||++
T Consensus         4 ~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~i~~~~q~~   80 (232)
T PRK10771          4 LTDITWLYHHLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTP-ASGSLTLNGQDHTTTPPSRRPVSMLFQEN   80 (232)
T ss_pred             EEEEEEEECCcc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCeecCcCChhhccEEEEeccc
Confidence            468999997643  499999999999999999999999999999999998 699999999987532 1245699999999


Q ss_pred             CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCC
Q psy8250          80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDL  159 (212)
Q Consensus        80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt  159 (212)
                      .+++.+|+.||+.+.....  ... ......++.++++.+|+.+..++++.+||||||||++||||++.+|+++||||||
T Consensus        81 ~~~~~~tv~e~l~~~~~~~--~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~  157 (232)
T PRK10771         81 NLFSHLTVAQNIGLGLNPG--LKL-NAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPF  157 (232)
T ss_pred             ccccCCcHHHHHhcccccc--cCC-CHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence            9999999999998753211  111 1234566889999999998999999999999999999999999999999999999


Q ss_pred             C-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         160 T-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       160 ~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      + ||+.++..+.++|.+++.+ .     .+|+.+.+... +  .+|++|++++.|+++++.
T Consensus       158 ~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~  218 (232)
T PRK10771        158 SALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELL  218 (232)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            9 9999999999999998654 2     26999987654 3  468899999999988764

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=100.00  E-value=5e-47  Score=336.90  Aligned_cols=207  Identities=20%  Similarity=0.291  Sum_probs=179.5

Q ss_pred             cccccccCC-----------cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCC--c---
Q psy8250           2 ETFHPLFGD-----------TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE--K---   65 (212)
Q Consensus         2 ~~l~~~~~~-----------~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~--~---   65 (212)
                      +++++.|..           ..+++||||++.+||++||+|+||||||||.|+|+|+..| ++|+|.++|.+..  .   
T Consensus       284 ~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P-~~G~i~~~g~~~~~~~~~~  362 (539)
T COG1123         284 RNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPP-SSGSIIFDGQDLDLTGGEL  362 (539)
T ss_pred             eeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEEeCcccccccchh
Confidence            577888762           3689999999999999999999999999999999999999 7999999998732  1   


Q ss_pred             ccccceEEEEcCCC--CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-ccCCCCCCCChHHHHHHHH
Q psy8250          66 NLMVKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVAL  142 (212)
Q Consensus        66 ~~~~~~i~~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqrqRv~l  142 (212)
                      ...++.+-++||+|  .+.|.+||.+++......+..  ....+.++++.++++.+|+.+ .++++|++||||||||++|
T Consensus       363 ~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~--~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaI  440 (539)
T COG1123         363 RRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGG--GSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAI  440 (539)
T ss_pred             hhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcc--cchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHH
Confidence            12455678889987  578999999999988776532  224566678999999999976 7999999999999999999


Q ss_pred             HHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHHH---HHHHhcCeeecCCchhhhc
Q psy8250         143 AVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR------NLHHVERARTVD---ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       143 A~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~~  211 (212)
                      ||||+.+|++||+||||| ||+..+.+++++|++++++.      .+||+..++..+   .+|++|+++..|+.+++-+
T Consensus       441 ARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v~~  519 (539)
T COG1123         441 ARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFE  519 (539)
T ss_pred             HHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHHhc
Confidence            999999999999999999 99999999999999999874      379999998753   4899999999999888753

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=8.6e-47  Score=294.89  Aligned_cols=200  Identities=26%  Similarity=0.340  Sum_probs=174.9

Q ss_pred             cccccccCCcc--eeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCC
Q psy8250           2 ETFHPLFGDTN--YKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHD   79 (212)
Q Consensus         2 ~~l~~~~~~~~--~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~   79 (212)
                      .+++.+|+++.  +|+|+|++|.+||.++++|||||||||||++++|+..| ..|+|.++|++++....  ..|.|||++
T Consensus         7 ~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P-~~G~i~l~~r~i~gPga--ergvVFQ~~   83 (259)
T COG4525           7 SHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP-SRGSIQLNGRRIEGPGA--ERGVVFQNE   83 (259)
T ss_pred             hheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCc-ccceEEECCEeccCCCc--cceeEeccC
Confidence            46788898776  99999999999999999999999999999999999999 69999999999975432  248999999


Q ss_pred             CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCC
Q psy8250          80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDL  159 (212)
Q Consensus        80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt  159 (212)
                      .++|.+++.+|+.|+.+++   ++.+.+..+.+.+++..+|+.+..++++-+||||||||+.|||||+.+|++|+||||+
T Consensus        84 ~LlPWl~~~dNvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPf  160 (259)
T COG4525          84 ALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPF  160 (259)
T ss_pred             ccchhhHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCch
Confidence            9999999999999999876   4667888889999999999999999999999999999999999999999999999999


Q ss_pred             C-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHH--hcCeeecCCch
Q psy8250         160 T-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLK--ELGLLKCRPAD  207 (212)
Q Consensus       160 ~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~--~g~~~~~~~~~  207 (212)
                      . ||.-+++++.++|-++-++ +     +||+++++--. +  .+|.  .|++++.-+++
T Consensus       161 gAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~d  220 (259)
T COG4525         161 GALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLD  220 (259)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCC
Confidence            9 9999999999998886544 2     38999988543 2  2444  67776665554

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1e-46  Score=339.56  Aligned_cols=208  Identities=21%  Similarity=0.225  Sum_probs=177.5

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc----cccceEEEEc
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN----LMVKVSGFVP   76 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~----~~~~~i~~v~   76 (212)
                      ++++++.|+++.+|+|+||++++|++++|+||||||||||+++|+|+++| ++|+|.++|+++...    ..++.++|+|
T Consensus         1 ~~nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~~i~~v~   79 (491)
T PRK10982          1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQK-DSGSILFQGKEIDFKSSKEALENGISMVH   79 (491)
T ss_pred             CCceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC-CceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence            57899999988899999999999999999999999999999999999998 699999999987532    2345699999


Q ss_pred             CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250          77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ  156 (212)
Q Consensus        77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD  156 (212)
                      |++.+++.+||.||+.+.............+..+++.++++.+++....++++.+|||||||||+|||||+.+|++||||
T Consensus        80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLD  159 (491)
T PRK10982         80 QELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMD  159 (491)
T ss_pred             cccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence            99988999999999987532110000123344567889999999998889999999999999999999999999999999


Q ss_pred             CCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhh
Q psy8250         157 HDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADEL  209 (212)
Q Consensus       157 EPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~  209 (212)
                      |||+ ||+.++..++++|++++.+.     .+||++++... +  .+|++|+++..|+++++
T Consensus       160 EPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  221 (491)
T PRK10982        160 EPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGL  221 (491)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhC
Confidence            9999 99999999999999997653     37999988764 3  47889999999987765

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.8e-46  Score=312.51  Aligned_cols=207  Identities=20%  Similarity=0.322  Sum_probs=173.2

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCC--CC--CceEEEECCEeCCc-----ccccce
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ--GD--VDGQILLNGLEVEK-----NLMVKV   71 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~--p~--~~G~I~~~g~~~~~-----~~~~~~   71 (212)
                      ++++++.|+++.+|+++||+|++||+++|+||||||||||+++|+|++.  |.  ++|+|+++|+++..     ..+++.
T Consensus        15 i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~   94 (259)
T PRK14274         15 INGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKN   94 (259)
T ss_pred             EeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhc
Confidence            4689999988889999999999999999999999999999999999986  31  48999999998742     123567


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHHh
Q psy8250          72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQTI  147 (212)
Q Consensus        72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al~  147 (212)
                      ++|+||++.+++. |++||+.+......  .....+...++.++++.+++.    +..++++.+||||||||++|||||+
T Consensus        95 i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~  171 (259)
T PRK14274         95 IGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALA  171 (259)
T ss_pred             eEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHh
Confidence            9999999988875 99999987644321  112334455678899999985    3468889999999999999999999


Q ss_pred             hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      .+|+++||||||+ ||+.++..++++|.+++...    .+|+++.+... +  .+|++|+++..|+++++.
T Consensus       172 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  242 (259)
T PRK14274        172 TNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMF  242 (259)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence            9999999999999 99999999999999987532    27999987664 3  478899999999998874

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2e-46  Score=310.65  Aligned_cols=207  Identities=22%  Similarity=0.301  Sum_probs=171.8

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcC---CCCC-CceEEEECCEeCCc-----ccccce
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQR---IQGD-VDGQILLNGLEVEK-----NLMVKV   71 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~---~~p~-~~G~I~~~g~~~~~-----~~~~~~   71 (212)
                      ++++++.|+++.+|+|+||++++|++++|+||||||||||+++|+|+   .+|. ++|+|.++|+++..     ...++.
T Consensus         6 ~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~   85 (250)
T PRK14245          6 ARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKN   85 (250)
T ss_pred             EEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhh
Confidence            46889999888899999999999999999999999999999999997   3331 38999999998753     123567


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc----ccCCCCCCCChHHHHHHHHHHHHh
Q psy8250          72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK----CKNSVLNVLSGGERKRVALAVQTI  147 (212)
Q Consensus        72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----~~~~~~~~LSgGqrqRv~lA~al~  147 (212)
                      ++|+||++.+++ .|+.||+.+....+..  .........+.++++.+++.+    ..++++.+||||||||++|||||+
T Consensus        86 i~~v~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~  162 (250)
T PRK14245         86 VGMVFQRPNPFP-KSIFENVAYGLRVNGV--KDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMA  162 (250)
T ss_pred             eEEEecCCccCc-ccHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHh
Confidence            999999998887 5999999876543211  112234456788999999853    568889999999999999999999


Q ss_pred             hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      .+|+++||||||+ ||+.++..++++|+++++..    .+|+++.+... +  .+|++|++++.|+++++.
T Consensus       163 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~  233 (250)
T PRK14245        163 VSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIF  233 (250)
T ss_pred             cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHh
Confidence            9999999999999 99999999999999986432    27999987654 3  478899999999988874

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.3e-46  Score=310.23  Aligned_cols=207  Identities=21%  Similarity=0.308  Sum_probs=172.7

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCC-C---CceEEEECCEeCCc-----ccccce
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQG-D---VDGQILLNGLEVEK-----NLMVKV   71 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p-~---~~G~I~~~g~~~~~-----~~~~~~   71 (212)
                      ++++++.|+++.+++|+||+|++||+++|+||||||||||+++|+|+.+| +   ++|+|+++|+++..     ...++.
T Consensus         6 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~   85 (250)
T PRK14240          6 VKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKR   85 (250)
T ss_pred             EEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhcc
Confidence            46899999888899999999999999999999999999999999998753 1   48999999998753     124567


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHHh
Q psy8250          72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQTI  147 (212)
Q Consensus        72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al~  147 (212)
                      ++|++|++.+++ +|+++|+.+.......  .......+.+.++++.+++.    +..++++.+||||||||++|||||+
T Consensus        86 i~~~~q~~~~~~-~t~~~ni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~  162 (250)
T PRK14240         86 VGMVFQQPNPFP-MSIYDNVAYGPRTHGI--KDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALA  162 (250)
T ss_pred             EEEEecCCccCc-ccHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHh
Confidence            999999998887 8999999886543211  12334456778889999874    4568889999999999999999999


Q ss_pred             hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      .+|+++||||||+ ||+.++..+.++|++++...    .+|+++.+... +  .+|++|+++..++++++.
T Consensus       163 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~  233 (250)
T PRK14240        163 VEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLF  233 (250)
T ss_pred             cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence            9999999999999 99999999999999986532    27999987664 3  478899999999988764

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=100.00  E-value=3.2e-46  Score=297.49  Aligned_cols=176  Identities=24%  Similarity=0.342  Sum_probs=149.4

Q ss_pred             cCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-----cccceEEEEcCCCC-C
Q psy8250           8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-----LMVKVSGFVPQHDL-T   81 (212)
Q Consensus         8 ~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-----~~~~~i~~v~Q~~~-~   81 (212)
                      |+++.+|+++||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|+++...     .+++.++|++|++. .
T Consensus         2 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~   80 (190)
T TIGR01166         2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRP-QSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQ   80 (190)
T ss_pred             CCccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceeEEECCEEccccccchHHHHhhEEEEecChhhc
Confidence            4667899999999999999999999999999999999999998 699999999987421     23457999999973 2


Q ss_pred             CCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-
Q psy8250          82 VDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-  160 (212)
Q Consensus        82 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-  160 (212)
                      ++..|++||+.+.....   .....+..+.+.++++.+|+.+..++++.+||||||||++|||||+.+|+++||||||+ 
T Consensus        81 ~~~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~  157 (190)
T TIGR01166        81 LFAADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAG  157 (190)
T ss_pred             cccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence            33579999998764322   12333445678899999999988999999999999999999999999999999999999 


Q ss_pred             CChhhHHHHHHHHHHHHhhc-----CcchHHH
Q psy8250         161 VDTLTVHEHMTLMARLKMDR-----NLHHVER  187 (212)
Q Consensus       161 lD~~~~~~~~~~l~~l~~~~-----~~h~~~~  187 (212)
                      ||+.+++.+.++|+++++++     .+|+++.
T Consensus       158 LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~  189 (190)
T TIGR01166       158 LDPAGREQMLAILRRLRAEGMTVVISTHDVDL  189 (190)
T ss_pred             CCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence            99999999999999997643     2688764

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.3e-46  Score=313.35  Aligned_cols=206  Identities=20%  Similarity=0.304  Sum_probs=171.5

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCC-----CCCceEEEECCEeCCcc-----cccc
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ-----GDVDGQILLNGLEVEKN-----LMVK   70 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~-----p~~~G~I~~~g~~~~~~-----~~~~   70 (212)
                      ++++++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+..     | ++|+|.++|+++...     .+++
T Consensus        24 ~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~-~~G~i~~~g~~i~~~~~~~~~~~~  102 (268)
T PRK14248         24 VKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSAR-SEGEILYEGLNILDSNINVVNLRR  102 (268)
T ss_pred             EEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCC-CceEEEECCEEcccccccHHHHhc
Confidence            4689999998889999999999999999999999999999999999864     5 699999999987431     2356


Q ss_pred             eEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHH
Q psy8250          71 VSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQT  146 (212)
Q Consensus        71 ~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al  146 (212)
                      .++|++|++.+++. |++||+.+......  ..........+.++++.+++.    +..++++.+||||||||++|||||
T Consensus       103 ~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral  179 (268)
T PRK14248        103 EIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTL  179 (268)
T ss_pred             cEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHH
Confidence            79999999988875 99999987643221  111223345577788888884    456888999999999999999999


Q ss_pred             hhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         147 IIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       147 ~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      +.+|++|||||||+ ||+.++..+.++|+++++..    .+|+++.+... +  .+|++|++++.|+++++.
T Consensus       180 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~  251 (268)
T PRK14248        180 AMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIF  251 (268)
T ss_pred             hCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            99999999999999 99999999999999996542    27999887654 3  478899999999988764

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=100.00  E-value=9.8e-47  Score=341.12  Aligned_cols=202  Identities=16%  Similarity=0.202  Sum_probs=176.2

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccc----ccceEEEEc
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL----MVKVSGFVP   76 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~----~~~~i~~v~   76 (212)
                      ++++++.|+++.+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++....    .++.++|++
T Consensus        14 ~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~~i~~v~   92 (510)
T PRK15439         14 ARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPP-DSGTLEIGGNPCARLTPAKAHQLGIYLVP   92 (510)
T ss_pred             EEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence            46899999988899999999999999999999999999999999999998 6999999999875321    224699999


Q ss_pred             CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250          77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ  156 (212)
Q Consensus        77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD  156 (212)
                      |++.+++.+|++||+.+....       .....+++.++++.+++.+..++++.+|||||||||+|||||+.+|++||||
T Consensus        93 q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLD  165 (510)
T PRK15439         93 QEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILD  165 (510)
T ss_pred             ccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence            999999999999999875321       1233466889999999998899999999999999999999999999999999


Q ss_pred             CCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         157 HDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       157 EPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      |||+ ||+.++..++++|+++++++     .+||++.+... +  .+|++|++++.|+++++.
T Consensus       166 EPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  228 (510)
T PRK15439        166 EPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLS  228 (510)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcC
Confidence            9999 99999999999999997653     37999988664 3  478899999999988764

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.1e-46  Score=309.68  Aligned_cols=207  Identities=20%  Similarity=0.323  Sum_probs=173.6

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCC----CCceEEEECCEeCCcc-----cccce
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQG----DVDGQILLNGLEVEKN-----LMVKV   71 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p----~~~G~I~~~g~~~~~~-----~~~~~   71 (212)
                      ++++++.|+++.+|+|+||+|++|++++|+||||||||||+++|+|+.+|    +++|+|.++|.++...     ..++.
T Consensus         7 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~   86 (251)
T PRK14270          7 SKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKR   86 (251)
T ss_pred             EEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhh
Confidence            46899999888899999999999999999999999999999999999864    1589999999987431     23567


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHHh
Q psy8250          72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQTI  147 (212)
Q Consensus        72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al~  147 (212)
                      ++|+||++.+++ +|++||+.+.......  ....+...++.++++.+++.    +..++++.+||+|||||++|||||+
T Consensus        87 i~~~~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~  163 (251)
T PRK14270         87 VGMVFQKPNPFP-MSIYDNVAYGPRIHGI--KDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIA  163 (251)
T ss_pred             eEEEecCCCcCC-CcHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence            999999998887 8999999876543211  12233445678899999874    4578889999999999999999999


Q ss_pred             hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      .+|+++||||||+ ||+.++..++++|+++++..    .+|+++.+... +  .+|++|+++..|+++++.
T Consensus       164 ~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~  234 (251)
T PRK14270        164 VKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF  234 (251)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence            9999999999999 99999999999999987643    27999987664 2  478899999999988874

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.8e-46  Score=309.89  Aligned_cols=207  Identities=20%  Similarity=0.250  Sum_probs=171.9

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCC--CC--CceEEEECCEeCCc-----ccccce
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ--GD--VDGQILLNGLEVEK-----NLMVKV   71 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~--p~--~~G~I~~~g~~~~~-----~~~~~~   71 (212)
                      ++++++.|+++.+++++||+|++||+++|+||||||||||+++|+|+..  |.  ++|+|.++|+++..     ..+++.
T Consensus         8 ~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~   87 (252)
T PRK14239          8 VSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKE   87 (252)
T ss_pred             EEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhc
Confidence            4688999988889999999999999999999999999999999999853  52  38999999998742     123567


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHHh
Q psy8250          72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQTI  147 (212)
Q Consensus        72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al~  147 (212)
                      ++|+||++.+++ +|+.||+.+......  ..........+.++++.+++.    +..++.+.+||+|||||++|||||+
T Consensus        88 i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~  164 (252)
T PRK14239         88 IGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLA  164 (252)
T ss_pred             EEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHh
Confidence            999999998887 799999987644321  111223445678889999874    4568899999999999999999999


Q ss_pred             hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      .+|++|||||||+ ||+.++..++++|++++...    .+|+++.+... +  .+|++|++++.|+++++.
T Consensus       165 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  235 (252)
T PRK14239        165 TSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMF  235 (252)
T ss_pred             cCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            9999999999999 99999999999999986532    27999887654 3  478899999999988874

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3e-46  Score=309.78  Aligned_cols=209  Identities=19%  Similarity=0.314  Sum_probs=172.8

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCC--C--CCceEEEECCEeCCcc-----cccce
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ--G--DVDGQILLNGLEVEKN-----LMVKV   71 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~--p--~~~G~I~~~g~~~~~~-----~~~~~   71 (212)
                      ++++++.|+++.+++|+||+|.+|++++|+||||||||||+++|+|+..  |  +++|+|+++|+++...     ..++.
T Consensus         8 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~   87 (251)
T PRK14244          8 VKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAK   87 (251)
T ss_pred             eeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhh
Confidence            4688999988889999999999999999999999999999999999975  2  1599999999987421     24567


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc----ccCCCCCCCChHHHHHHHHHHHHh
Q psy8250          72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK----CKNSVLNVLSGGERKRVALAVQTI  147 (212)
Q Consensus        72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----~~~~~~~~LSgGqrqRv~lA~al~  147 (212)
                      ++|+||++.+++. |+.+|+.+....+. ...........+.++++.+|+.+    ..++.+.+||||||||++|||||+
T Consensus        88 i~~v~q~~~~~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~  165 (251)
T PRK14244         88 VGMVFQKPNPFPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIA  165 (251)
T ss_pred             EEEEecCcccccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHh
Confidence            9999999988876 99999987643321 11122334456788999999964    457789999999999999999999


Q ss_pred             hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250         148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      .+|++|||||||+ ||+.++..+.+.|++++...    .+|+++.+... +  .+|++|+++..|+++++.+
T Consensus       166 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  237 (251)
T PRK14244        166 VKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFK  237 (251)
T ss_pred             cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHhc
Confidence            9999999999999 99999999999999986432    27999987653 3  4788999999999888753

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=6.5e-47  Score=298.78  Aligned_cols=207  Identities=23%  Similarity=0.305  Sum_probs=179.9

Q ss_pred             cccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEcCC
Q psy8250           2 ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQH   78 (212)
Q Consensus         2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~Q~   78 (212)
                      +|++++..++.++++|||++.+||+++|+||||||||||||.|+|.+.| ++|++.++|.+.+.   ..+.++.+.+||+
T Consensus         5 ~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p-~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~   83 (259)
T COG4559           5 ENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSP-DSGEVTLNGVPLNSWPPEELARHRAVLPQN   83 (259)
T ss_pred             eeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCC-CCCeEeeCCcChhhCCHHHHHHHhhhcccC
Confidence            6889999999999999999999999999999999999999999999999 69999999998854   2356677999999


Q ss_pred             CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhC------CCe
Q psy8250          79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIV------QSG  152 (212)
Q Consensus        79 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~------p~l  152 (212)
                      ..+-+.+||+|.+.++..-+.. +....+..+.++.+|...++..+..+...+|||||||||.+||+|++-      +++
T Consensus        84 s~laFpFtv~eVV~mGr~p~~~-g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~  162 (259)
T COG4559          84 SSLAFPFTVQEVVQMGRIPHRS-GREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRW  162 (259)
T ss_pred             cccccceEHHHHHHhccccccc-CCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCce
Confidence            8887778999999997654321 112234556688999999999999999999999999999999999984      458


Q ss_pred             EEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         153 FVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       153 lilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      |+|||||| ||...+..++++.+.+..+.     +.||++.++.+ +  .+|++||++++|+|+++.
T Consensus       163 L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vl  229 (259)
T COG4559         163 LFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVL  229 (259)
T ss_pred             EEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhc
Confidence            89999999 99999999999999998875     37999988765 3  489999999999998875

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.8e-46  Score=309.08  Aligned_cols=207  Identities=21%  Similarity=0.319  Sum_probs=172.0

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCC--C--CCceEEEECCEeCCc-----ccccce
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ--G--DVDGQILLNGLEVEK-----NLMVKV   71 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~--p--~~~G~I~~~g~~~~~-----~~~~~~   71 (212)
                      ++++++.|+.+.+|+++||+|++||+++|+||||||||||+++|+|+++  |  +++|+|.++|+++..     ...++.
T Consensus         7 ~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~   86 (251)
T PRK14251          7 AKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKE   86 (251)
T ss_pred             EEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhcc
Confidence            4689999988889999999999999999999999999999999999986  2  159999999998742     123567


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHHh
Q psy8250          72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQTI  147 (212)
Q Consensus        72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al~  147 (212)
                      ++|++|++.+++ .|++||+.+.......  .........+.++++.+++.    ...++++.+|||||+||++|||||+
T Consensus        87 i~~~~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~  163 (251)
T PRK14251         87 VGMVFQQPTPFP-FSVYDNVAYGLKIAGV--KDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALA  163 (251)
T ss_pred             EEEEecCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHh
Confidence            999999998886 7999999876433211  11223345678899999984    4568889999999999999999999


Q ss_pred             hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      .+|+++||||||+ ||+.++..+.++|++++...    .+|+++.+... +  .+|++|+++..|+++++.
T Consensus       164 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  234 (251)
T PRK14251        164 VRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF  234 (251)
T ss_pred             cCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence            9999999999999 99999999999999986532    27999987664 3  478899999999988764

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=3.7e-46  Score=300.41  Aligned_cols=183  Identities=21%  Similarity=0.247  Sum_probs=160.4

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc--ccccceEEEEcCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK--NLMVKVSGFVPQH   78 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~--~~~~~~i~~v~Q~   78 (212)
                      ++++++.|+++.+++|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++..  ...++.++|++|+
T Consensus         4 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p-~~G~v~~~g~~~~~~~~~~~~~~~~~~~~   82 (204)
T PRK13538          4 ARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARP-DAGEVLWQGEPIRRQRDEYHQDLLYLGHQ   82 (204)
T ss_pred             EEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEEcccchHHhhhheEEeCCc
Confidence            46899999988899999999999999999999999999999999999998 69999999998753  2345678999999


Q ss_pred             CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250          79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD  158 (212)
Q Consensus        79 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP  158 (212)
                      +.+++.+|+.||+.+....+.   .   ...+.+.++++.+|+.+..++++.+||||||||++|||||+.+|+++|||||
T Consensus        83 ~~~~~~~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP  156 (204)
T PRK13538         83 PGIKTELTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEP  156 (204)
T ss_pred             cccCcCCcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            999999999999988654321   1   2345678899999998888999999999999999999999999999999999


Q ss_pred             CC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHH
Q psy8250         159 LT-VDTLTVHEHMTLMARLKMDR-----NLHHVERART  190 (212)
Q Consensus       159 t~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~  190 (212)
                      |+ ||+.++..++++|++++++.     .+|+.+.+..
T Consensus       157 t~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~  194 (204)
T PRK13538        157 FTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVAS  194 (204)
T ss_pred             CccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhcc
Confidence            99 99999999999999987543     2799887744

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.2e-46  Score=314.46  Aligned_cols=205  Identities=20%  Similarity=0.298  Sum_probs=172.7

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCC----CCceEEEECCEeCCc-----ccccce
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQG----DVDGQILLNGLEVEK-----NLMVKV   71 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p----~~~G~I~~~g~~~~~-----~~~~~~   71 (212)
                      ++++++.|+++.+|+++||+|.+|++++|+||||||||||+++|+|++.|    +++|+|.++|.++..     ..+++.
T Consensus        42 i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~  121 (285)
T PRK14254         42 ARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRR  121 (285)
T ss_pred             EEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhcc
Confidence            36889999888899999999999999999999999999999999999862    269999999998742     134567


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHHh
Q psy8250          72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQTI  147 (212)
Q Consensus        72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al~  147 (212)
                      ++|+||++.+++. |+.||+.+......   ... ....++.++++.+++.    +..++++.+||||||||++|||||+
T Consensus       122 i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~  196 (285)
T PRK14254        122 IGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIA  196 (285)
T ss_pred             EEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHH
Confidence            9999999988875 99999987654321   122 3345688899999984    4578899999999999999999999


Q ss_pred             hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-HH---HHHhcCeeecCCchhhh
Q psy8250         148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-DA---LLKELGLLKCRPADELN  210 (212)
Q Consensus       148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~~---~l~~g~~~~~~~~~~~~  210 (212)
                      .+|++|||||||+ ||+.++..+.++|++++++.    .+|+++.+... +.   ++++|+++..|+++++.
T Consensus       197 ~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~  268 (285)
T PRK14254        197 PDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIF  268 (285)
T ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHH
Confidence            9999999999999 99999999999999997643    37999988764 43   35899999999988764

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.8e-46  Score=308.88  Aligned_cols=208  Identities=23%  Similarity=0.343  Sum_probs=173.3

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCC----CCceEEEECCEeCCc-----ccccce
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQG----DVDGQILLNGLEVEK-----NLMVKV   71 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p----~~~G~I~~~g~~~~~-----~~~~~~   71 (212)
                      ++++++.|++..+++++||++++|++++|+||||||||||+++|+|++.|    +++|+|.++|.++..     ..+++.
T Consensus         6 ~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~   85 (250)
T PRK14262          6 IENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKK   85 (250)
T ss_pred             EEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhh
Confidence            46899999888899999999999999999999999999999999999873    158999999998743     123567


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc----ccCCCCCCCChHHHHHHHHHHHHh
Q psy8250          72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK----CKNSVLNVLSGGERKRVALAVQTI  147 (212)
Q Consensus        72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----~~~~~~~~LSgGqrqRv~lA~al~  147 (212)
                      ++|+||++.+++ .|++||+.+......  ..........+.++++.+++..    ..++++.+|||||+||++|||||+
T Consensus        86 i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~  162 (250)
T PRK14262         86 VGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALA  162 (250)
T ss_pred             EEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHh
Confidence            999999998887 899999987654321  1122334456788899999853    478899999999999999999999


Q ss_pred             hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250         148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      .+|+++||||||+ ||+.++..++++|.++++..    .+|+.+.+... +  .++++|+++..|+++++.+
T Consensus       163 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  234 (250)
T PRK14262        163 VEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVE  234 (250)
T ss_pred             CCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence            9999999999999 99999999999999986532    27999877654 3  4788999999999888753

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.5e-46  Score=344.37  Aligned_cols=207  Identities=20%  Similarity=0.251  Sum_probs=176.6

Q ss_pred             CcccccccC-----------CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---
Q psy8250           1 METFHPLFG-----------DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---   66 (212)
Q Consensus         1 ~~~l~~~~~-----------~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---   66 (212)
                      ++++++.|+           ...+|++|||+|++||++||+||||||||||+++|+|+++| ++|+|+++|+++...   
T Consensus       316 ~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p-~~G~I~~~g~~i~~~~~~  394 (623)
T PRK10261        316 VRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVES-QGGEIIFNGQRIDTLSPG  394 (623)
T ss_pred             EeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC-CCcEEEECCEECCcCCHH
Confidence            367888885           14699999999999999999999999999999999999998 699999999987531   


Q ss_pred             ---cccceEEEEcCCC--CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHH
Q psy8250          67 ---LMVKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRV  140 (212)
Q Consensus        67 ---~~~~~i~~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv  140 (212)
                         .+++.++|+||++  .+++.+||.+|+.+....+..  ....+..+++.++|+.+|+. ...++++.+|||||||||
T Consensus       395 ~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~--~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv  472 (623)
T PRK10261        395 KLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGL--LPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRI  472 (623)
T ss_pred             HHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHH
Confidence               2356799999997  588899999999886543211  12334556788999999996 678999999999999999


Q ss_pred             HHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHHH---HHHHhcCeeecCCchhhh
Q psy8250         141 ALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTVD---ALLKELGLLKCRPADELN  210 (212)
Q Consensus       141 ~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~  210 (212)
                      +|||||+.+|++|||||||+ ||+.++.+++++|++++++ .     .|||++.+...+   .+|++|++++.|+++++.
T Consensus       473 ~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i~  552 (623)
T PRK10261        473 CIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVF  552 (623)
T ss_pred             HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence            99999999999999999999 9999999999999999765 2     279999887643   478899999999998874

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=1.8e-46  Score=314.76  Aligned_cols=208  Identities=21%  Similarity=0.236  Sum_probs=173.9

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCC--------ceEEEECCEeCCcc---ccc
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDV--------DGQILLNGLEVEKN---LMV   69 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~--------~G~I~~~g~~~~~~---~~~   69 (212)
                      ++++++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+++| +        +|+|.++|.++...   .++
T Consensus         4 ~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p-~~~~~~~~~~G~i~~~g~~~~~~~~~~~~   82 (272)
T PRK13547          4 ADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTG-GGAPRGARVTGDVTLNGEPLAAIDAPRLA   82 (272)
T ss_pred             EEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-cccccccCCceEEEECCEEcccCCHHHHH
Confidence            47899999988999999999999999999999999999999999999988 5        89999999987432   234


Q ss_pred             ceEEEEcCCCCCCCCCCHHHHHHHHHhhhc-ccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhh
Q psy8250          70 KVSGFVPQHDLTVDTLTVHEHMTLMARLKM-DRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTII  148 (212)
Q Consensus        70 ~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~  148 (212)
                      +.++|+||++..++.+|+.||+.+...... .......+....+.++++.+++.+..++++.+|||||+||++|||||+.
T Consensus        83 ~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~  162 (272)
T PRK13547         83 RLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQ  162 (272)
T ss_pred             hhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence            568999999876667899999987532110 0011112344567889999999988999999999999999999999994


Q ss_pred             ---------CCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhh
Q psy8250         149 ---------VQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADEL  209 (212)
Q Consensus       149 ---------~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~  209 (212)
                               +|++|||||||+ ||+.++..++++|++++.+ .     .+|+++.+... +  .+|++|++++.|+++++
T Consensus       163 ~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  242 (272)
T PRK13547        163 LWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADV  242 (272)
T ss_pred             cccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEecCHHHH
Confidence                     999999999999 9999999999999998765 2     26999988654 3  47889999999998876

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.7e-46  Score=308.56  Aligned_cols=208  Identities=23%  Similarity=0.305  Sum_probs=172.7

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCC----CceEEEECCEeCCc-----ccccce
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD----VDGQILLNGLEVEK-----NLMVKV   71 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~----~~G~I~~~g~~~~~-----~~~~~~   71 (212)
                      ++++++.|+++.+++|+||+|++|++++|+||||||||||+++|+|+++|.    ++|+|.++|.++..     ..+++.
T Consensus         7 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~   86 (252)
T PRK14272          7 AQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRR   86 (252)
T ss_pred             EeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhce
Confidence            478999998888999999999999999999999999999999999998762    27999999998742     133567


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHHh
Q psy8250          72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQTI  147 (212)
Q Consensus        72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al~  147 (212)
                      ++|++|++.+++.+|+.||+.+.......  .......+.+.++++.+++.    +..++++.+||||||||++|||||+
T Consensus        87 i~~~~q~~~~~~~~t~~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~  164 (252)
T PRK14272         87 VGMVFQKPNPFPTMSVFDNVVAGLKLAGI--RDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALA  164 (252)
T ss_pred             eEEEeccCccCcCCCHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHh
Confidence            99999999999999999999875432211  12233345566777777653    4568889999999999999999999


Q ss_pred             hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      .+|++|||||||+ ||+.++..+.++|++++...    .+|+.+.+... +  .+|++|++++.|+++++.
T Consensus       165 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  235 (252)
T PRK14272        165 VEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLF  235 (252)
T ss_pred             cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            9999999999999 99999999999999987532    26999988764 3  478899999999988764

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=2.7e-46  Score=286.69  Aligned_cols=198  Identities=27%  Similarity=0.317  Sum_probs=172.8

Q ss_pred             cccccccC----CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-------cccc
Q psy8250           2 ETFHPLFG----DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-------LMVK   70 (212)
Q Consensus         2 ~~l~~~~~----~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-------~~~~   70 (212)
                      +++++..+    ...+|++|++.|++||.++|+|||||||||||-+++|+..| ++|+|.+.|+++...       .+.+
T Consensus        10 ~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~-ssGeV~l~G~~L~~ldEd~rA~~R~~   88 (228)
T COG4181          10 HHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDP-SSGEVRLLGQPLHKLDEDARAALRAR   88 (228)
T ss_pred             hhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCC-CCceEEEcCcchhhcCHHHHHHhhcc
Confidence            34555543    35699999999999999999999999999999999999999 699999999998542       2457


Q ss_pred             eEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCC
Q psy8250          71 VSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQ  150 (212)
Q Consensus        71 ~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p  150 (212)
                      ++|||||...+.|+||..||+..+..+...   +.......+.++|+.+|+...++.+|.+|||||+|||+|||||+..|
T Consensus        89 ~vGfVFQSF~Lip~ltAlENV~lPleL~ge---~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P  165 (228)
T COG4181          89 HVGFVFQSFHLIPNLTALENVALPLELRGE---SSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRP  165 (228)
T ss_pred             ceeEEEEeeeccccchhhhhccchhhhcCC---ccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCC
Confidence            899999999999999999999998887642   33455667889999999999999999999999999999999999999


Q ss_pred             CeEEecCCCC-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHHHHH--HHhcCeeec
Q psy8250         151 SGFVPQHDLT-VDTLTVHEHMTLMARLKMDR------NLHHVERARTVDAL--LKELGLLKC  203 (212)
Q Consensus       151 ~llilDEPt~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~~~~--l~~g~~~~~  203 (212)
                      ++||.||||- ||..+-.+|.++|..++.++      +|||...+..+.+.  |.+|+++.+
T Consensus       166 ~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~  227 (228)
T COG4181         166 DVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED  227 (228)
T ss_pred             CEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence            9999999999 99999999999999998875      37999988887764  558887543

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.7e-46  Score=309.57  Aligned_cols=207  Identities=19%  Similarity=0.280  Sum_probs=172.9

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCC----CceEEEECCEeCCc-----ccccce
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD----VDGQILLNGLEVEK-----NLMVKV   71 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~----~~G~I~~~g~~~~~-----~~~~~~   71 (212)
                      ++++++.|++..+|+|+||++++|++++|+|+||||||||+++|+|+++|.    ++|+|.++|+++..     ..+++.
T Consensus        10 ~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~   89 (259)
T PRK14260         10 VKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQ   89 (259)
T ss_pred             EEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhh
Confidence            468899998888999999999999999999999999999999999998752    38999999998742     123567


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHHh
Q psy8250          72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQTI  147 (212)
Q Consensus        72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al~  147 (212)
                      ++|+||++.+++ +|++||+.+......  ..+.......+.++++.+++.    +..++++.+||+||+||++|||||+
T Consensus        90 i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~  166 (259)
T PRK14260         90 IGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALA  166 (259)
T ss_pred             eEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHh
Confidence            999999998887 899999987654321  122334445677889999883    4678899999999999999999999


Q ss_pred             hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH---HHHH-----hcCeeecCCchhhh
Q psy8250         148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD---ALLK-----ELGLLKCRPADELN  210 (212)
Q Consensus       148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~---~~l~-----~g~~~~~~~~~~~~  210 (212)
                      .+|+++||||||+ ||+.++..++++|++++...    .+|+++.+...+   .+|+     +|+++..|+++++.
T Consensus       167 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~  242 (259)
T PRK14260        167 IKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQIF  242 (259)
T ss_pred             cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCCHHHHh
Confidence            9999999999999 99999999999999987542    379999887643   3665     59999999998874

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.8e-46  Score=313.16  Aligned_cols=205  Identities=19%  Similarity=0.273  Sum_probs=169.6

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCC----CCceEEEECCEeCCc-----ccccce
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQG----DVDGQILLNGLEVEK-----NLMVKV   71 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p----~~~G~I~~~g~~~~~-----~~~~~~   71 (212)
                      ++++++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+++|    +++|+|.++|.++..     ..+++.
T Consensus        16 i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~   95 (269)
T PRK14259         16 LQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRR   95 (269)
T ss_pred             EEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhc
Confidence            46899999988899999999999999999999999999999999999862    269999999998742     234567


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHHh
Q psy8250          72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQTI  147 (212)
Q Consensus        72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al~  147 (212)
                      ++|+||++.+++. |++||+.+......   .. ....+.+.++++.+++.    +..++++.+||+|||||++|||||+
T Consensus        96 i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~  170 (269)
T PRK14259         96 IGMVFQQPNPFPK-SIYENIAFGARING---YT-GDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIA  170 (269)
T ss_pred             eEEEccCCccchh-hHHHHHhhhhhhcC---Cc-HHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHh
Confidence            9999999988874 99999988654321   11 12344567788888763    4578889999999999999999999


Q ss_pred             hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH---HHHHh-----------cCeeecCCchh
Q psy8250         148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD---ALLKE-----------LGLLKCRPADE  208 (212)
Q Consensus       148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~---~~l~~-----------g~~~~~~~~~~  208 (212)
                      .+|++|||||||+ ||+.++..++++|++++...    .+|+++.+...+   .+|++           |++++.|++++
T Consensus       171 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~  250 (269)
T PRK14259        171 IEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKK  250 (269)
T ss_pred             cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEEEeCCHHH
Confidence            9999999999999 99999999999999986532    379998886643   36665           56899999888


Q ss_pred             hh
Q psy8250         209 LN  210 (212)
Q Consensus       209 ~~  210 (212)
                      +.
T Consensus       251 ~~  252 (269)
T PRK14259        251 IF  252 (269)
T ss_pred             HH
Confidence            74

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=100.00  E-value=4.9e-47  Score=311.13  Aligned_cols=209  Identities=22%  Similarity=0.288  Sum_probs=168.5

Q ss_pred             CcccccccCCc--ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250           1 METFHPLFGDT--NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV   75 (212)
Q Consensus         1 ~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v   75 (212)
                      ++++++.|++.  .+++++||++++|++++|+||||||||||+++|+|+++| ++|+|+++|.++..   ...++.++|+
T Consensus         3 ~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~i~~~   81 (234)
T cd03251           3 FKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDV-DSGRILIDGHDVRDYTLASLRRQIGLV   81 (234)
T ss_pred             EEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccC-CCCEEEECCEEhhhCCHHHHHhhEEEe
Confidence            46889999765  799999999999999999999999999999999999998 69999999988743   2345679999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHc--CCccccCCCCCCCChHHHHHHHHHHHHhhCCCeE
Q psy8250          76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGF  153 (212)
Q Consensus        76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~ll  153 (212)
                      +|++.+++ .|++||+.+..................+.++++.+  ++.+..++++.+||+|||||++|||||+.+|+++
T Consensus        82 ~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll  160 (234)
T cd03251          82 SQDVFLFN-DTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPIL  160 (234)
T ss_pred             CCCCeecc-ccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence            99998876 69999998743211000000000111245666666  6777788889999999999999999999999999


Q ss_pred             EecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250         154 VPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       154 ilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      ||||||+ ||+.++..+.++|+++++..    .+|+++.+..++  .+|++|+++..++++++.+
T Consensus       161 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~  225 (234)
T cd03251         161 ILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLA  225 (234)
T ss_pred             EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHH
Confidence            9999999 99999999999999986532    279998886543  4788999999999888754

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.9e-46  Score=312.24  Aligned_cols=208  Identities=20%  Similarity=0.244  Sum_probs=174.4

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCC----CCceEEEECCEeCCc----ccccceE
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQG----DVDGQILLNGLEVEK----NLMVKVS   72 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p----~~~G~I~~~g~~~~~----~~~~~~i   72 (212)
                      ++++++.|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|    +++|+|.++|.++..    ..+++.+
T Consensus        24 i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i  103 (276)
T PRK14271         24 AVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRV  103 (276)
T ss_pred             EeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhhe
Confidence            46899999988999999999999999999999999999999999999875    259999999998743    1345679


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc----ccCCCCCCCChHHHHHHHHHHHHhh
Q psy8250          73 GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK----CKNSVLNVLSGGERKRVALAVQTII  148 (212)
Q Consensus        73 ~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----~~~~~~~~LSgGqrqRv~lA~al~~  148 (212)
                      +|+||++.+++ .|+++|+.+......  .....+....+.++++.+++..    ..++.+.+|||||+||++|||||+.
T Consensus       104 ~~v~q~~~l~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~  180 (276)
T PRK14271        104 GMLFQRPNPFP-MSIMDNVLAGVRAHK--LVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAV  180 (276)
T ss_pred             EEeccCCccCC-ccHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhc
Confidence            99999998887 799999987643221  1233344456678899999863    4678899999999999999999999


Q ss_pred             CCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250         149 VQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       149 ~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      +|+++||||||+ ||+.+++.+.++|++++.+.    .+|+++.+... +  .+|++|+++..|+++++.+
T Consensus       181 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~  251 (276)
T PRK14271        181 NPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS  251 (276)
T ss_pred             CCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            999999999999 99999999999999987642    27999987664 3  4788999999999888753

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7e-46  Score=310.37  Aligned_cols=207  Identities=21%  Similarity=0.297  Sum_probs=173.6

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCC----CCceEEEECCEeCCcc-----cccce
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQG----DVDGQILLNGLEVEKN-----LMVKV   71 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p----~~~G~I~~~g~~~~~~-----~~~~~   71 (212)
                      ++++++.|+++.+|+|+||++.+||+++|+||||||||||+++|+|+++|    +++|+|.++|.++...     ..++.
T Consensus        23 ~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~  102 (267)
T PRK14237         23 TKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKH  102 (267)
T ss_pred             EeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcc
Confidence            46899999888999999999999999999999999999999999999863    2699999999987421     23567


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHHh
Q psy8250          72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQTI  147 (212)
Q Consensus        72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al~  147 (212)
                      ++|+||++.+++ .|++||+.++.....  ..........+.++++.+++.    +..++++.+|||||+||++|||||+
T Consensus       103 i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~  179 (267)
T PRK14237        103 IGMVFQRPNPFA-KSIYENITFALERAG--VKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIA  179 (267)
T ss_pred             eEEEecCCcccc-ccHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHh
Confidence            999999998887 599999988644321  112334456678899999984    4578899999999999999999999


Q ss_pred             hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      .+|+++||||||+ ||+.++..+.++|++++...    .+|+.+.+... +  .+|++|++++.|+++++.
T Consensus       180 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  250 (267)
T PRK14237        180 VKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIF  250 (267)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence            9999999999999 99999999999999996432    27999887653 3  478899999999988773

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=100.00  E-value=4.6e-47  Score=311.99  Aligned_cols=209  Identities=20%  Similarity=0.271  Sum_probs=165.6

Q ss_pred             CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250           1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV   75 (212)
Q Consensus         1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v   75 (212)
                      ++++++.|++  ..+++++||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++..   ..+++.++|+
T Consensus         3 ~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~   81 (237)
T cd03252           3 FEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVP-ENGRVLVDGHDLALADPAWLRRQVGVV   81 (237)
T ss_pred             EEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC-CCCEEEECCeehHhcCHHHHhhcEEEE
Confidence            4688999963  5699999999999999999999999999999999999998 69999999998743   2345679999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHc--CCccccCCCCCCCChHHHHHHHHHHHHhhCCCeE
Q psy8250          76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGF  153 (212)
Q Consensus        76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~ll  153 (212)
                      ||++.+++ .|+.||+.+..................+.++++.+  ++....++++.+|||||||||+|||||+.+|+++
T Consensus        82 ~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll  160 (237)
T cd03252          82 LQENVLFN-RSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRIL  160 (237)
T ss_pred             cCCchhcc-chHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence            99988765 69999998643210000000000111234556665  5666678889999999999999999999999999


Q ss_pred             EecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250         154 VPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       154 ilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      ||||||+ ||+.++..+.++|++++...    .+|+++.+..++  .+|++|+++..|+++++..
T Consensus       161 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~  225 (237)
T cd03252         161 IFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLA  225 (237)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            9999999 99999999999999986422    279999875433  4788999999999887753

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=100.00  E-value=1e-45  Score=304.15  Aligned_cols=195  Identities=21%  Similarity=0.246  Sum_probs=163.5

Q ss_pred             cccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc--ccccceEEEEc-CCCCCC
Q psy8250           6 PLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK--NLMVKVSGFVP-QHDLTV   82 (212)
Q Consensus         6 ~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~--~~~~~~i~~v~-Q~~~~~   82 (212)
                      +.|+.+.+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++..  ...++.++|++ |.+.++
T Consensus        29 ~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  107 (236)
T cd03267          29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQP-TSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLW  107 (236)
T ss_pred             cccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC-CceEEEECCEEccccchhhcccEEEEcCCccccC
Confidence            445667899999999999999999999999999999999999998 69999999987632  23456799998 557788


Q ss_pred             CCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-C
Q psy8250          83 DTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-V  161 (212)
Q Consensus        83 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-l  161 (212)
                      +.+|+.||+.+....+.   ....+....+.++++.+|+.+..++++.+||||||||++|||||+.+|+++||||||+ |
T Consensus       108 ~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~L  184 (236)
T cd03267         108 WDLPVIDSFYLLAAIYD---LPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGL  184 (236)
T ss_pred             CCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Confidence            88999999987654321   2233445567889999999988899999999999999999999999999999999999 9


Q ss_pred             ChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecC
Q psy8250         162 DTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCR  204 (212)
Q Consensus       162 D~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~  204 (212)
                      |+.++..+.++|.+++++ .     .+|+.+++... +  .+|++|++++.|
T Consensus       185 D~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g  236 (236)
T cd03267         185 DVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG  236 (236)
T ss_pred             CHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence            999999999999999764 2     37999987664 2  467788876654

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.4e-46  Score=313.51  Aligned_cols=207  Identities=21%  Similarity=0.290  Sum_probs=171.8

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCC--C--CCceEEEECCEeCCcc-----cccce
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ--G--DVDGQILLNGLEVEKN-----LMVKV   71 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~--p--~~~G~I~~~g~~~~~~-----~~~~~   71 (212)
                      ++++++.|++..+|+|+||+|.+|++++|+||||||||||+++|+|+..  |  +++|+|.++|.++...     .+++.
T Consensus        42 ~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~  121 (286)
T PRK14275         42 AKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKK  121 (286)
T ss_pred             EeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhc
Confidence            4688999988889999999999999999999999999999999999854  3  1699999999987421     24567


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHHh
Q psy8250          72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQTI  147 (212)
Q Consensus        72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al~  147 (212)
                      ++|++|++.+++. |+.||+.+....+..  .+.......+.++++.+++.    +..++++.+||||||||++|||||+
T Consensus       122 i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~  198 (286)
T PRK14275        122 IGMVFQKPNPFPK-SIFDNIAYGPRLHGI--NDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLA  198 (286)
T ss_pred             EEEECCCCCCCcc-CHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHh
Confidence            9999999988875 999999986543211  12223345677888998873    4678889999999999999999999


Q ss_pred             hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      .+|++|||||||+ ||+.++..++++|++++...    .+|+.+.+... +  .+|++|+++..|+++++.
T Consensus       199 ~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~  269 (286)
T PRK14275        199 VEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLF  269 (286)
T ss_pred             cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            9999999999999 99999999999999987542    37999988664 3  478899999999988764

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.2e-46  Score=307.16  Aligned_cols=208  Identities=19%  Similarity=0.258  Sum_probs=172.2

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCC----CceEEEECCEeCCc-----ccccce
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD----VDGQILLNGLEVEK-----NLMVKV   71 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~----~~G~I~~~g~~~~~-----~~~~~~   71 (212)
                      ++++++.|+++.+|+++||+|.+|++++|+||||||||||+++|+|+++|.    .+|+|+++|.++..     ..+++.
T Consensus         7 ~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~   86 (251)
T PRK14249          7 IRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKR   86 (251)
T ss_pred             EEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhce
Confidence            468999998888999999999999999999999999999999999999873    15999999998742     134567


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHHh
Q psy8250          72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQTI  147 (212)
Q Consensus        72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al~  147 (212)
                      ++|+||++.+++. |+.||+.+....+..  .........+.++++.+++.    +..++++.+||||||||++|||||+
T Consensus        87 i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~  163 (251)
T PRK14249         87 VGMVFQQPNPFPK-SIFDNVAFGPRMLGT--TAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLA  163 (251)
T ss_pred             EEEEecCCccCcC-cHHHHHhhHHHhcCC--ChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence            9999999988875 999999876543211  11222345567788888864    4578899999999999999999999


Q ss_pred             hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250         148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      .+|+++||||||+ ||+.++..+.++|+++++..    .+|+++.+... +  .+|++|+++..|+++++.+
T Consensus       164 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  235 (251)
T PRK14249        164 IEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFS  235 (251)
T ss_pred             cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence            9999999999999 99999999999999986422    27999988764 3  4788999999999887743

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=100.00  E-value=1.1e-45  Score=302.90  Aligned_cols=192  Identities=24%  Similarity=0.293  Sum_probs=162.0

Q ss_pred             eeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHHHH
Q psy8250          14 KESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTL   93 (212)
Q Consensus        14 l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~   93 (212)
                      |+++||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++.....  ..+|++|++.+++.+|+.||+.+
T Consensus         1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l~~   77 (230)
T TIGR01184         1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQP-TSGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENIAL   77 (230)
T ss_pred             CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHHHH
Confidence            5799999999999999999999999999999999998 69999999998754222  24899999999999999999987


Q ss_pred             HHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHH
Q psy8250          94 MARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTL  172 (212)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~  172 (212)
                      +..... ......+....+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||+ ||+.++..+.++
T Consensus        78 ~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~  156 (230)
T TIGR01184        78 AVDRVL-PDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEE  156 (230)
T ss_pred             HHHhcc-cCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHH
Confidence            632111 122334445668899999999988999999999999999999999999999999999999 999999999999


Q ss_pred             HHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhh
Q psy8250         173 MARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADEL  209 (212)
Q Consensus       173 l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~  209 (212)
                      |.+++++ .     .+|+++.+... +  .+|++|+++..|+...+
T Consensus       157 l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  202 (230)
T TIGR01184       157 LMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV  202 (230)
T ss_pred             HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence            9998764 2     27999987664 3  47889999888876443

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.3e-46  Score=307.03  Aligned_cols=207  Identities=21%  Similarity=0.295  Sum_probs=172.6

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCC----CceEEEECCEeCCc----ccccceE
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD----VDGQILLNGLEVEK----NLMVKVS   72 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~----~~G~I~~~g~~~~~----~~~~~~i   72 (212)
                      ++++++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+.+|.    ++|+|.++|.++..    ...++.+
T Consensus         6 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i   85 (249)
T PRK14253          6 IENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKV   85 (249)
T ss_pred             EeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhhe
Confidence            368999999888999999999999999999999999999999999998751    48999999998742    2345679


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHHhh
Q psy8250          73 GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQTII  148 (212)
Q Consensus        73 ~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al~~  148 (212)
                      +|+||++.+++ .|+.||+.+......  ........+++.++++.+++.    +..++++.+|||||+||++|||||+.
T Consensus        86 ~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~  162 (249)
T PRK14253         86 GMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAM  162 (249)
T ss_pred             eEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHc
Confidence            99999998887 799999987643221  112233345677888888874    45678899999999999999999999


Q ss_pred             CCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         149 VQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       149 ~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      +|+++||||||+ ||+.++..++++|++++++.    .+|+.+.+... +  .+|++|+++..|+++++.
T Consensus       163 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  232 (249)
T PRK14253        163 EPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF  232 (249)
T ss_pred             CCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            999999999999 99999999999999997642    27999987764 3  478899999999988764

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.2e-46  Score=341.91  Aligned_cols=207  Identities=17%  Similarity=0.217  Sum_probs=174.8

Q ss_pred             CcccccccCC----cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCC----------c-
Q psy8250           1 METFHPLFGD----TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE----------K-   65 (212)
Q Consensus         1 ~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~----------~-   65 (212)
                      ++++++.|+.    ..+++||||+|++|+++||+||||||||||+++|+|+++| .+|+|.++|..+.          . 
T Consensus        15 v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p-~~G~i~~~g~~~~~~~~~~~~~~~~   93 (623)
T PRK10261         15 VENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQ-AGGLVQCDKMLLRRRSRQVIELSEQ   93 (623)
T ss_pred             EeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC-CCeEEEECCEEeccccccccccccC
Confidence            4689999962    4699999999999999999999999999999999999998 6999999987441          0 


Q ss_pred             --c---cc-cceEEEEcCCC--CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc---ccCCCCCCCCh
Q psy8250          66 --N---LM-VKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK---CKNSVLNVLSG  134 (212)
Q Consensus        66 --~---~~-~~~i~~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~---~~~~~~~~LSg  134 (212)
                        .   .. ++.+|||+|++  .+++.+||.||+.+....+.  ..+..+..+++.++++.+|+.+   ..++++.+|||
T Consensus        94 ~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSg  171 (623)
T PRK10261         94 SAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSG  171 (623)
T ss_pred             CHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCH
Confidence              0   11 24699999998  67888999999998765421  2344555678899999999953   57899999999


Q ss_pred             HHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecC
Q psy8250         135 GERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCR  204 (212)
Q Consensus       135 GqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~  204 (212)
                      ||||||+|||||+.+|++|||||||+ ||+.++.+++++|++++++ +     +|||++.+... +  .+|++|++++.|
T Consensus       172 Gq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~~~g  251 (623)
T PRK10261        172 GMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETG  251 (623)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeecccC
Confidence            99999999999999999999999999 9999999999999999765 2     37999988764 3  478999999999


Q ss_pred             Cchhhh
Q psy8250         205 PADELN  210 (212)
Q Consensus       205 ~~~~~~  210 (212)
                      +++++.
T Consensus       252 ~~~~~~  257 (623)
T PRK10261        252 SVEQIF  257 (623)
T ss_pred             CHHHhh
Confidence            888763

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=100.00  E-value=1.1e-45  Score=306.65  Aligned_cols=207  Identities=18%  Similarity=0.186  Sum_probs=170.5

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEe-----CCccc-------c
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLE-----VEKNL-------M   68 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~-----~~~~~-------~   68 (212)
                      ++++++.|++..+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.+     +....       +
T Consensus         6 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~~~   84 (253)
T TIGR02323         6 VSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAP-DHGTATYIMRSGAELELYQLSEAERRRLM   84 (253)
T ss_pred             EeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEEecccccccccccCCHHHHHHhh
Confidence            46899999888899999999999999999999999999999999999988 69999999976     43211       2


Q ss_pred             cceEEEEcCCCC--CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHH
Q psy8250          69 VKVSGFVPQHDL--TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQ  145 (212)
Q Consensus        69 ~~~i~~v~Q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~a  145 (212)
                      ++.++|++|++.  +++.+|+.+|+.+......  ..........+.++++.+++. ...++.+.+||||||||++||||
T Consensus        85 ~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~lara  162 (253)
T TIGR02323        85 RTEWGFVHQNPRDGLRMRVSAGANIGERLMAIG--ARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARN  162 (253)
T ss_pred             hcceEEEEeCcccccCccccHHHHHHHHHHHhc--ccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHH
Confidence            346899999974  4456789999875432111  011123346778999999997 47899999999999999999999


Q ss_pred             HhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         146 TIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       146 l~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      |+.+|++|||||||+ ||+.+++.++++|.++..+ +     .+|+.+.+... +  .+|++|+++..|+++++.
T Consensus       163 l~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~~~~  237 (253)
T TIGR02323       163 LVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVL  237 (253)
T ss_pred             HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHHHHh
Confidence            999999999999999 9999999999999998654 2     37999988753 3  478899999999888764

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=100.00  E-value=1.4e-45  Score=306.36  Aligned_cols=205  Identities=18%  Similarity=0.190  Sum_probs=170.4

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCC---CceEEEECCEeCCcccc-cceEEEEc
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD---VDGQILLNGLEVEKNLM-VKVSGFVP   76 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~---~~G~I~~~g~~~~~~~~-~~~i~~v~   76 (212)
                      ++++++.| ++.+|+++||++++|++++|+||||||||||+++|+|+++|.   ++|+|+++|+++..... ++.++|+|
T Consensus         7 ~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~   85 (254)
T PRK10418          7 LRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIM   85 (254)
T ss_pred             EeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEe
Confidence            46889999 567999999999999999999999999999999999998871   48999999998854332 35699999


Q ss_pred             CCCC--CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc---ccCCCCCCCChHHHHHHHHHHHHhhCCC
Q psy8250          77 QHDL--TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK---CKNSVLNVLSGGERKRVALAVQTIIVQS  151 (212)
Q Consensus        77 Q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~---~~~~~~~~LSgGqrqRv~lA~al~~~p~  151 (212)
                      |++.  +.+.+|+.+++.+......   ...  ....+.++++.+++.+   ..++.+.+|||||+||++|||||+.+|+
T Consensus        86 q~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~  160 (254)
T PRK10418         86 QNPRSAFNPLHTMHTHARETCLALG---KPA--DDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAP  160 (254)
T ss_pred             cCCccccCccccHHHHHHHHHHHcC---CCh--HHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCC
Confidence            9974  4466799998876433221   111  2356889999999976   5688999999999999999999999999


Q ss_pred             eEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250         152 GFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       152 llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      +|||||||+ ||+.++..++++|++++++ +     .+|+.+.+... +  .+|++|+++..|+++++.+
T Consensus       161 lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~  230 (254)
T PRK10418        161 FIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN  230 (254)
T ss_pred             EEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence            999999999 9999999999999998764 2     37999987654 3  4788999999999888743

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-45  Score=306.06  Aligned_cols=207  Identities=20%  Similarity=0.302  Sum_probs=172.5

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCC--C--CceEEEECCEeCCcc-----cccce
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQG--D--VDGQILLNGLEVEKN-----LMVKV   71 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p--~--~~G~I~~~g~~~~~~-----~~~~~   71 (212)
                      ++++++.|+++.+|+|+||++++|++++|+||||||||||+++|+|+..+  +  ++|+|.++|+++...     ..++.
T Consensus         9 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~   88 (253)
T PRK14261          9 TKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRK   88 (253)
T ss_pred             EeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhce
Confidence            46899999988899999999999999999999999999999999998752  1  389999999987531     23567


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHHh
Q psy8250          72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQTI  147 (212)
Q Consensus        72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al~  147 (212)
                      ++|++|++.+++. |++||+.+....+..  .........+.++++.+++.    +..++.+.+||+|||||++|||||+
T Consensus        89 i~~~~q~~~~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~  165 (253)
T PRK14261         89 IGMVFQRPNPFPK-SIYENVAYGPRIHGE--KNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLA  165 (253)
T ss_pred             EEEEecCCccCcc-cHHHHHHhhHHhcCC--CCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHh
Confidence            9999999988875 999999986543311  12233445677888988874    3468889999999999999999999


Q ss_pred             hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      .+|+++||||||+ ||+.++..+.++|+++++..    .+|+.+.+... +  .+|++|+++..|+++++.
T Consensus       166 ~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  236 (253)
T PRK14261        166 VNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIF  236 (253)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence            9999999999999 99999999999999987542    26999888653 3  478899999999988875

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-45  Score=309.25  Aligned_cols=208  Identities=22%  Similarity=0.293  Sum_probs=173.4

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCC----CCceEEEECCEeCCc-----ccccce
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQG----DVDGQILLNGLEVEK-----NLMVKV   71 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p----~~~G~I~~~g~~~~~-----~~~~~~   71 (212)
                      ++++++.|+++.+|+|+||+|++|++++|+||||||||||+++|+|+++|    +++|+|.++|.++..     ..+++.
T Consensus        28 ~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~  107 (272)
T PRK14236         28 VRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRR  107 (272)
T ss_pred             EEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhcc
Confidence            36889999888899999999999999999999999999999999999873    259999999998753     124567


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHHh
Q psy8250          72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQTI  147 (212)
Q Consensus        72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al~  147 (212)
                      ++|++|++.+++. |++||+.+.......  .........+.++++.+++.    +..++++.+||||||||++|||||+
T Consensus       108 i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~  184 (272)
T PRK14236        108 VGMVFQRPNPFPK-SIYENVVYGLRLQGI--NNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIA  184 (272)
T ss_pred             EEEEecCCccCcc-cHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHH
Confidence            9999999988886 999999876543211  12223345678889999885    3568889999999999999999999


Q ss_pred             hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250         148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      .+|+++||||||+ ||+.++..++++|+++++..    .+|+.+.+... +  .+|++|+++..|+++++.+
T Consensus       185 ~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  256 (272)
T PRK14236        185 IEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLFT  256 (272)
T ss_pred             CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHHhc
Confidence            9999999999999 99999999999999997542    27999887653 3  4788999999999887653

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=100.00  E-value=8.8e-46  Score=334.18  Aligned_cols=209  Identities=17%  Similarity=0.214  Sum_probs=175.0

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCC-CCceEEEECCEeCCccc----ccceEEEE
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQG-DVDGQILLNGLEVEKNL----MVKVSGFV   75 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p-~~~G~I~~~g~~~~~~~----~~~~i~~v   75 (212)
                      ++++++.|+++.+|++|||++++|++++|+||||||||||+++|+|+++| +++|+|.++|+++....    .++.++|+
T Consensus         4 i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v   83 (500)
T TIGR02633         4 MKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVII   83 (500)
T ss_pred             EEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEE
Confidence            47899999988899999999999999999999999999999999999875 25999999999885321    23569999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHhhhccc-CCCHHHHHHHHHHHHHHcCCcccc-CCCCCCCChHHHHHHHHHHHHhhCCCeE
Q psy8250          76 PQHDLTVDTLTVHEHMTLMARLKMDR-NLHHVERARTVDALLKELGLLKCK-NSVLNVLSGGERKRVALAVQTIIVQSGF  153 (212)
Q Consensus        76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LSgGqrqRv~lA~al~~~p~ll  153 (212)
                      ||++.+++.+|+.||+.+........ .........++.++++.+++.+.. ++++.+|||||||||+|||||+.+|++|
T Consensus        84 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~ll  163 (500)
T TIGR02633        84 HQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLL  163 (500)
T ss_pred             eeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEE
Confidence            99999999999999998764321100 012334456788999999998654 5779999999999999999999999999


Q ss_pred             EecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhh
Q psy8250         154 VPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADEL  209 (212)
Q Consensus       154 ilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~  209 (212)
                      ||||||+ ||+.++..++++|+++++++     .+||++.+... +  .+|++|+++..++++++
T Consensus       164 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~  228 (500)
T TIGR02633       164 ILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM  228 (500)
T ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence            9999999 99999999999999997653     27999988764 3  47889999988877654

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=2.7e-45  Score=297.49  Aligned_cols=184  Identities=18%  Similarity=0.211  Sum_probs=160.5

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL   80 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~   80 (212)
                      ++++++.|+++.+++++||++++|++++|+||||||||||+++|+|+++| ++|+|.++|+++.....++.++|++|++.
T Consensus        14 ~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~i~~~~~~~~i~~~~q~~~   92 (214)
T PRK13543         14 AHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHV-ESGQIQIDGKTATRGDRSRFMAYLGHLPG   92 (214)
T ss_pred             EeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCC-CCeeEEECCEEccchhhhhceEEeecCcc
Confidence            46899999888899999999999999999999999999999999999998 69999999998864334456899999999


Q ss_pred             CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC
Q psy8250          81 TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT  160 (212)
Q Consensus        81 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~  160 (212)
                      +++.+|+.||+.+....+.   .   .....+.++++.+++.+..++++.+||+|||||++||||++.+|+++||||||+
T Consensus        93 ~~~~~t~~e~l~~~~~~~~---~---~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~  166 (214)
T PRK13543         93 LKADLSTLENLHFLCGLHG---R---RAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYA  166 (214)
T ss_pred             cccCCcHHHHHHHHHHhcC---C---cHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence            9988999999987654321   1   123456788999999988899999999999999999999999999999999999


Q ss_pred             -CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH
Q psy8250         161 -VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV  191 (212)
Q Consensus       161 -lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~  191 (212)
                       ||+.+++.+.++|+++++++     .+|+.+.+...
T Consensus       167 ~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~  203 (214)
T PRK13543        167 NLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPV  203 (214)
T ss_pred             cCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhh
Confidence             99999999999999987653     37999887653

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=100.00  E-value=1.7e-45  Score=308.29  Aligned_cols=207  Identities=18%  Similarity=0.232  Sum_probs=174.1

Q ss_pred             CcccccccC---------CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-----
Q psy8250           1 METFHPLFG---------DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-----   66 (212)
Q Consensus         1 ~~~l~~~~~---------~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-----   66 (212)
                      ++++++.|+         ++.+++|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++...     
T Consensus         6 ~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~sG~i~~~g~~~~~~~~~~~   84 (268)
T PRK10419          6 VSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESP-SQGNVSWRGEPLAKLNRAQR   84 (268)
T ss_pred             EeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEeccccChhHH
Confidence            468899997         46799999999999999999999999999999999999988 699999999987431     


Q ss_pred             -cccceEEEEcCCC--CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHH
Q psy8250          67 -LMVKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVAL  142 (212)
Q Consensus        67 -~~~~~i~~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~l  142 (212)
                       ..++.++|++|++  .+++..|+.+|+.+......  ..........+.++++.+|+. ...++++.+||+||+||++|
T Consensus        85 ~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~l  162 (268)
T PRK10419         85 KAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLL--SLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCL  162 (268)
T ss_pred             HHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHH
Confidence             2356799999997  46677899999876443211  123344556789999999997 57899999999999999999


Q ss_pred             HHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         143 AVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       143 A~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      ||||+.+|++|||||||+ ||+.++..+.++|++++++ .     .+|+.+.+... +  .+|++|++++.|+++++.
T Consensus       163 aral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~  240 (268)
T PRK10419        163 ARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKL  240 (268)
T ss_pred             HHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhcc
Confidence            999999999999999999 9999999999999998764 2     27999988764 3  467899999999888763

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=100.00  E-value=8.9e-46  Score=301.38  Aligned_cols=197  Identities=22%  Similarity=0.303  Sum_probs=165.1

Q ss_pred             CcccccccCC----cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc------cccc
Q psy8250           1 METFHPLFGD----TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN------LMVK   70 (212)
Q Consensus         1 ~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~------~~~~   70 (212)
                      ++++++.|++    +.+|+++||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++...      ..++
T Consensus         4 ~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~   82 (220)
T TIGR02982         4 IRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSV-QEGSLKVLGQELYGASEKELVQLRR   82 (220)
T ss_pred             EEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEEhHhcCHhHHHHHHh
Confidence            4688999974    6799999999999999999999999999999999999988 699999999987431      2356


Q ss_pred             eEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCC
Q psy8250          71 VSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQ  150 (212)
Q Consensus        71 ~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p  150 (212)
                      .++|+||++.+++.+|+.+|+.+......  .....+....+.++++.+|+.+..++.+.+||+|||||++|||||+.+|
T Consensus        83 ~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p  160 (220)
T TIGR02982        83 NIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRP  160 (220)
T ss_pred             heEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence            79999999999998999999998654321  1233445567889999999998889999999999999999999999999


Q ss_pred             CeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHHH--HHHHhcCe
Q psy8250         151 SGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTVD--ALLKELGL  200 (212)
Q Consensus       151 ~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~~--~~l~~g~~  200 (212)
                      +++||||||+ ||+.++..++++|++++++ +     .+|+.+....++  .+|++|++
T Consensus       161 ~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~  219 (220)
T TIGR02982       161 KLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL  219 (220)
T ss_pred             CEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence            9999999999 9999999999999998764 2     279987543222  24555543

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=100.00  E-value=6.2e-46  Score=303.39  Aligned_cols=198  Identities=19%  Similarity=0.282  Sum_probs=164.6

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEEEcC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGFVPQ   77 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~v~Q   77 (212)
                      ++++++.|+++.+++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...   ..++.++|+||
T Consensus        10 ~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~q   88 (225)
T PRK10247         10 LQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISP-TSGTLLFEGEDISTLKPEIYRQQVSYCAQ   88 (225)
T ss_pred             EeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC-CCCeEEECCEEcCcCCHHHHHhccEEEec
Confidence            46899999888899999999999999999999999999999999999988 699999999987532   23567899999


Q ss_pred             CCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250          78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ  156 (212)
Q Consensus        78 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD  156 (212)
                      ++.+++. |++||+.+....+..   .  .....+.++++.+++. ...++++.+||+||+||++|||||+.+|+++|||
T Consensus        89 ~~~l~~~-tv~enl~~~~~~~~~---~--~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD  162 (225)
T PRK10247         89 TPTLFGD-TVYDNLIFPWQIRNQ---Q--PDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLD  162 (225)
T ss_pred             ccccccc-cHHHHHHhHHhhcCC---C--hHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            9988874 999999875433211   1  1234577899999996 5789999999999999999999999999999999


Q ss_pred             CCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHHH--HHH-HhcCeeecCC
Q psy8250         157 HDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTVD--ALL-KELGLLKCRP  205 (212)
Q Consensus       157 EPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~~--~~l-~~g~~~~~~~  205 (212)
                      |||+ ||+.++..+.++|.+++++ +     .+|+.+.+..++  .+| +++..+.+|.
T Consensus       163 EPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~  221 (225)
T PRK10247        163 EITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEAR  221 (225)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhh
Confidence            9999 9999999999999998754 2     269998875433  244 3555666665

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-45  Score=309.61  Aligned_cols=206  Identities=18%  Similarity=0.256  Sum_probs=170.4

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCC-----CCCceEEEECCEeCCc-----ccccc
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ-----GDVDGQILLNGLEVEK-----NLMVK   70 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~-----p~~~G~I~~~g~~~~~-----~~~~~   70 (212)
                      ++++++.|++..+|+|+||+|++|++++|+|+||||||||+++|+|+++     | ++|+|.++|.++..     ...++
T Consensus        27 ~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~-~~G~i~~~g~~~~~~~~~~~~~~~  105 (271)
T PRK14238         27 TQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVK-TTGKILYRDQNIFDKSYSVEELRT  105 (271)
T ss_pred             EeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCC-CceeEEECCEEcccccccHHHHhh
Confidence            4689999988889999999999999999999999999999999999986     5 69999999998742     12356


Q ss_pred             eEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcC----CccccCCCCCCCChHHHHHHHHHHHH
Q psy8250          71 VSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELG----LLKCKNSVLNVLSGGERKRVALAVQT  146 (212)
Q Consensus        71 ~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~g----l~~~~~~~~~~LSgGqrqRv~lA~al  146 (212)
                      .++|+||++.+++. |+.||+.++.....  ..........+.++++.++    +.+..++++.+||||||||++|||||
T Consensus       106 ~i~~v~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL  182 (271)
T PRK14238        106 NVGMVFQKPNPFPK-SIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCL  182 (271)
T ss_pred             hEEEEecCCccccc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHH
Confidence            79999999988874 99999988654321  1122223445677777775    34567889999999999999999999


Q ss_pred             hhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         147 IIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       147 ~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      +.+|++|||||||+ ||+.++..+.++|+++++..    .+|+++.+... +  .+|++|+++..|+++++.
T Consensus       183 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~  254 (271)
T PRK14238        183 AIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIF  254 (271)
T ss_pred             HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            99999999999999 99999999999999997532    26999987654 3  478899999999988774

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=100.00  E-value=9.4e-46  Score=328.78  Aligned_cols=209  Identities=21%  Similarity=0.301  Sum_probs=180.0

Q ss_pred             CcccccccCCc----ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCC---CceEEEECCEeCCcc-------
Q psy8250           1 METFHPLFGDT----NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD---VDGQILLNGLEVEKN-------   66 (212)
Q Consensus         1 ~~~l~~~~~~~----~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~---~~G~I~~~g~~~~~~-------   66 (212)
                      ++||++.|...    .+++||||++.+||++||+|+|||||||+.++|.|++++.   .+|+|.++|.++...       
T Consensus         8 V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~   87 (539)
T COG1123           8 VENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRK   87 (539)
T ss_pred             EeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHH
Confidence            46888888543    5999999999999999999999999999999999999873   389999999977321       


Q ss_pred             cccceEEEEcCCCC--CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccC--CCCCCCChHHHHHHHH
Q psy8250          67 LMVKVSGFVPQHDL--TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKN--SVLNVLSGGERKRVAL  142 (212)
Q Consensus        67 ~~~~~i~~v~Q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~--~~~~~LSgGqrqRv~l  142 (212)
                      .+.+.|+|+||+|.  +.|.+|+.+.+.-....+..  .++++..+++.++|+.+|+.+...  ++|++|||||||||.|
T Consensus        88 ~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~--~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~i  165 (539)
T COG1123          88 LRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK--GSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMI  165 (539)
T ss_pred             hccccEEEEecCchhhcCchhhHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHH
Confidence            13467999999973  56778999988877766642  347788889999999999976554  4999999999999999


Q ss_pred             HHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHHH---HHHHhcCeeecCCchhhhc
Q psy8250         143 AVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR------NLHHVERARTVD---ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       143 A~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~~  211 (212)
                      |+||+.+|++||+||||+ ||+..+.+|+++|++++++.      .|||++.+++.+   .+|++|++++.|++++|-.
T Consensus       166 AmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~  244 (539)
T COG1123         166 AMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILS  244 (539)
T ss_pred             HHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHh
Confidence            999999999999999999 99999999999999998764      389999988753   4899999999999998853

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9e-46  Score=334.22  Aligned_cols=204  Identities=20%  Similarity=0.217  Sum_probs=173.1

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc----cccceEEEEc
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN----LMVKVSGFVP   76 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~----~~~~~i~~v~   76 (212)
                      ++++++.|+++.+|+|+||++++|++++|+||||||||||+++|+|+++| ++|+|+++|+++...    .+++.++|++
T Consensus         7 ~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~I~~~g~~i~~~~~~~~~~~~i~~v~   85 (501)
T PRK11288          7 FDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQP-DAGSILIDGQEMRFASTTAALAAGVAIIY   85 (501)
T ss_pred             EeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCCEEEECCEECCCCCHHHHHhCCEEEEE
Confidence            46899999888899999999999999999999999999999999999988 699999999987431    2356799999


Q ss_pred             CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250          77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ  156 (212)
Q Consensus        77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD  156 (212)
                      |++.+++.+|+.+|+.++............+...++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||
T Consensus        86 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD  165 (501)
T PRK11288         86 QELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFD  165 (501)
T ss_pred             echhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEc
Confidence            99999999999999987532111011123344567889999999988889999999999999999999999999999999


Q ss_pred             CCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCC
Q psy8250         157 HDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRP  205 (212)
Q Consensus       157 EPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~  205 (212)
                      |||+ ||+.++..++++|+++++++     .+||++.+... +  .+|++|+++..++
T Consensus       166 EPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~  223 (501)
T PRK11288        166 EPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFD  223 (501)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence            9999 99999999999999997653     37999988664 3  4788999877654

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.5e-46  Score=310.64  Aligned_cols=209  Identities=19%  Similarity=0.228  Sum_probs=168.0

Q ss_pred             CcccccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCC
Q psy8250           1 METFHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHD   79 (212)
Q Consensus         1 ~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~   79 (212)
                      ++++++.|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|+++.....++.++|+||++
T Consensus         9 ~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~~~~i~~v~q~~   87 (272)
T PRK15056          9 VNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRL-ASGKISILGQPTRQALQKNLVAYVPQSE   87 (272)
T ss_pred             EEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEhHHhhccceEEEecccc
Confidence            368899995 57899999999999999999999999999999999999998 6999999999875322234699999997


Q ss_pred             CCC--CCCCHHHHHHHHHhhh-cccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250          80 LTV--DTLTVHEHMTLMARLK-MDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ  156 (212)
Q Consensus        80 ~~~--~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD  156 (212)
                      .+.  ...++.+++.+..... .............+.++++.+|+.+..++++.+||||||||++|||||+.+|+++|||
T Consensus        88 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllD  167 (272)
T PRK15056         88 EVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLD  167 (272)
T ss_pred             ccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            652  2346888876532100 0001111233456788999999998899999999999999999999999999999999


Q ss_pred             CCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHHH-H-HHHhcCeeecCCchhhh
Q psy8250         157 HDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTVD-A-LLKELGLLKCRPADELN  210 (212)
Q Consensus       157 EPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~~-~-~l~~g~~~~~~~~~~~~  210 (212)
                      |||+ ||+.+++.+.++|.+++.++     .+|+++.+...+ . ++.+|+++..|+++++.
T Consensus       168 EPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~~G~i~~~g~~~~~~  229 (272)
T PRK15056        168 EPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMVKGTVLASGPTETTF  229 (272)
T ss_pred             CCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEECCEEEeecCHHhcc
Confidence            9999 99999999999999997643     279998876542 2 22389999999988763

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=100.00  E-value=1.2e-45  Score=334.71  Aligned_cols=206  Identities=21%  Similarity=0.208  Sum_probs=173.2

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCC--CCCCceEEEEC-------------------
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRI--QGDVDGQILLN-------------------   59 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~--~p~~~G~I~~~-------------------   59 (212)
                      +++++++|+++.+|+++||++.+|++++|+||||||||||+++|+|++  .| ++|+|.++                   
T Consensus         3 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p-~~G~i~~~~~~~~~~~~~~~~~~~g~~   81 (520)
T TIGR03269         3 VKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEP-TSGRIIYHVALCEKCGYVERPSKVGEP   81 (520)
T ss_pred             EEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCC-CceEEEEeccccccccccccccccccc
Confidence            478999998888999999999999999999999999999999999997  57 69999997                   


Q ss_pred             ----CEeCC-------c------ccccceEEEEcCC-CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCC
Q psy8250          60 ----GLEVE-------K------NLMVKVSGFVPQH-DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGL  121 (212)
Q Consensus        60 ----g~~~~-------~------~~~~~~i~~v~Q~-~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl  121 (212)
                          |.++.       .      ..+++.++|+||+ +.+++.+|+++|+.+.....   ..+..+..+++.++++.+|+
T Consensus        82 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl  158 (520)
T TIGR03269        82 CPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKEAVGRAVDLIEMVQL  158 (520)
T ss_pred             cccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCC
Confidence                22221       0      1134568999997 67888899999998865432   22344556678999999999


Q ss_pred             ccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H-
Q psy8250         122 LKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D-  192 (212)
Q Consensus       122 ~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~-  192 (212)
                      .+..++++.+|||||||||+|||||+.+|++|||||||+ ||+.++..++++|++++++ .     ++||.+.+... + 
T Consensus       159 ~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~  238 (520)
T TIGR03269       159 SHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDK  238 (520)
T ss_pred             hhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCE
Confidence            988899999999999999999999999999999999999 9999999999999999654 2     37999988654 3 


Q ss_pred             -HHHHhcCeeecCCchhhh
Q psy8250         193 -ALLKELGLLKCRPADELN  210 (212)
Q Consensus       193 -~~l~~g~~~~~~~~~~~~  210 (212)
                       .+|++|+++..|+++++.
T Consensus       239 i~~l~~G~i~~~g~~~~~~  257 (520)
T TIGR03269       239 AIWLENGEIKEEGTPDEVV  257 (520)
T ss_pred             EEEEeCCEEeeecCHHHHH
Confidence             478899999888887753

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=2.2e-45  Score=296.66  Aligned_cols=182  Identities=23%  Similarity=0.265  Sum_probs=158.1

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL   80 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~   80 (212)
                      ++++++.|++..+++++||+|++|++++|+||||||||||+++|+|+.+| ++|+|.++|.++.....++.++|++|++.
T Consensus         5 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~~~   83 (207)
T PRK13539          5 GEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP-AAGTIKLDGGDIDDPDVAEACHYLGHRNA   83 (207)
T ss_pred             EEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEeCcchhhHhhcEEecCCCc
Confidence            46899999888899999999999999999999999999999999999988 69999999988642224567899999888


Q ss_pred             CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC
Q psy8250          81 TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT  160 (212)
Q Consensus        81 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~  160 (212)
                      +++.+|+.+|+.+......   .    ....+.++++.+|+.+..++++.+||||||||++|||||+.+|+++||||||+
T Consensus        84 ~~~~~tv~~~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~  156 (207)
T PRK13539         84 MKPALTVAENLEFWAAFLG---G----EELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTA  156 (207)
T ss_pred             CCCCCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence            8888999999987554321   1    12347889999999888889999999999999999999999999999999999


Q ss_pred             -CChhhHHHHHHHHHHHHhhc-----CcchHHHHHH
Q psy8250         161 -VDTLTVHEHMTLMARLKMDR-----NLHHVERART  190 (212)
Q Consensus       161 -lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~  190 (212)
                       ||+.++.+++++|++++++.     .+|+.+++..
T Consensus       157 ~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~  192 (207)
T PRK13539        157 ALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG  192 (207)
T ss_pred             cCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc
Confidence             99999999999999986653     2699887754

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=100.00  E-value=1e-46  Score=348.58  Aligned_cols=209  Identities=22%  Similarity=0.300  Sum_probs=172.7

Q ss_pred             CcccccccCCc--ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250           1 METFHPLFGDT--NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV   75 (212)
Q Consensus         1 ~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v   75 (212)
                      +++++++|+..  .+|+|+|++|++||.+||+|+||||||||+|+|+|++.| ++|+|.+||.++..   ..+|+++|||
T Consensus       474 ~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p-~~G~I~~dg~dl~~i~~~~lR~~ig~V  552 (709)
T COG2274         474 FENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKP-QQGRILLDGVDLNDIDLASLRRQVGYV  552 (709)
T ss_pred             EEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEeHHhcCHHHHHhheeEE
Confidence            46899999765  699999999999999999999999999999999999999 69999999999854   4678999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHc--CCccccCCCCCCCChHHHHHHHHHHHHhhCCCeE
Q psy8250          76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGF  153 (212)
Q Consensus        76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~ll  153 (212)
                      +|++.+|.. |++||+.++.........-.+.....+.+.+..+  |++.........||||||||++|||||+++|++|
T Consensus       553 ~Q~~~Lf~g-SI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~IL  631 (709)
T COG2274         553 LQDPFLFSG-SIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKIL  631 (709)
T ss_pred             cccchhhcC-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEE
Confidence            999998877 9999999864322100111112222344445544  4455556667889999999999999999999999


Q ss_pred             EecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250         154 VPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       154 ilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      ||||||| ||+.+.+.+.+.|.++....    .+|.+..++.++  .+|++|+++.+|+.+|+.+
T Consensus       632 lLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~  696 (709)
T COG2274         632 LLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLA  696 (709)
T ss_pred             EEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHH
Confidence            9999999 99999999999999998543    379999988776  4899999999999999865

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.7e-45  Score=304.09  Aligned_cols=207  Identities=18%  Similarity=0.268  Sum_probs=170.3

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCC--CC--CceEEEECCEeCCc-----ccccce
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ--GD--VDGQILLNGLEVEK-----NLMVKV   71 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~--p~--~~G~I~~~g~~~~~-----~~~~~~   71 (212)
                      ++++++.|+++.+|+++||+|.+|++++|+||||||||||+++|+|+..  |+  ++|+|.++|.++..     ...++.
T Consensus         8 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~   87 (252)
T PRK14255          8 SSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQ   87 (252)
T ss_pred             EEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCe
Confidence            4689999998889999999999999999999999999999999999864  41  38999999998742     123567


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHHh
Q psy8250          72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQTI  147 (212)
Q Consensus        72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al~  147 (212)
                      ++|++|++.+++ .|+++|+.+.......  .........+.++++.+++.    +..++.+.+||+|||||++|||||+
T Consensus        88 i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~  164 (252)
T PRK14255         88 VGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLA  164 (252)
T ss_pred             EEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHh
Confidence            999999998887 6999999876543211  11222234567788888763    4568889999999999999999999


Q ss_pred             hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      .+|+++||||||+ ||+.++..+.++|++++.+.    .+|+.+.+... +  .+|++|+++..|++.++.
T Consensus       165 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  235 (252)
T PRK14255        165 VKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMF  235 (252)
T ss_pred             cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            9999999999999 99999999999999987542    27999988654 3  478899999999887764

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=100.00  E-value=1.9e-45  Score=295.68  Aligned_cols=180  Identities=22%  Similarity=0.245  Sum_probs=157.3

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc--ccccceEEEEcCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK--NLMVKVSGFVPQH   78 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~--~~~~~~i~~v~Q~   78 (212)
                      ++++++.|+++.+++++||+|++|+++||+||||||||||+++|+|+++| ++|+|.++|.++..  ...++.++|++|+
T Consensus         3 i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~i~~~~q~   81 (201)
T cd03231           3 ADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPP-LAGRVLLNGGPLDFQRDSIARGLLYLGHA   81 (201)
T ss_pred             EEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEecccccHHhhhheEEeccc
Confidence            47899999988899999999999999999999999999999999999988 69999999988743  2345679999999


Q ss_pred             CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250          79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD  158 (212)
Q Consensus        79 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP  158 (212)
                      +.+++.+|++||+.+....         ...+++.++++.+++.+..++++.+||||||||++|||||+.+|+++|||||
T Consensus        82 ~~~~~~~tv~e~l~~~~~~---------~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP  152 (201)
T cd03231          82 PGIKTTLSVLENLRFWHAD---------HSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEP  152 (201)
T ss_pred             cccCCCcCHHHHHHhhccc---------ccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            9988899999999874321         0235678899999999888999999999999999999999999999999999


Q ss_pred             CC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHH
Q psy8250         159 LT-VDTLTVHEHMTLMARLKMDR-----NLHHVERART  190 (212)
Q Consensus       159 t~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~  190 (212)
                      |+ ||+.+++.++++|++++.+.     .+|+.+....
T Consensus       153 t~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~  190 (201)
T cd03231         153 TTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSE  190 (201)
T ss_pred             CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhh
Confidence            99 99999999999999987643     3698665543

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=4.6e-46  Score=283.46  Aligned_cols=205  Identities=21%  Similarity=0.245  Sum_probs=181.4

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---------ccccce
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---------NLMVKV   71 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---------~~~~~~   71 (212)
                      ++++++.||..++|-||+|+-++|+.+.++||||||||||+|.++-+..| .+|+..+-|...+-         ..+++.
T Consensus         5 v~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p-~sg~l~ia~~~fd~s~~~~~k~i~~lr~~   83 (242)
T COG4161           5 LNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMP-RSGTLNIAGNHFDFSKTPSDKAIRDLRRN   83 (242)
T ss_pred             EcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCC-CCCeEEecccccccccCccHHHHHHHHHh
Confidence            47899999999999999999999999999999999999999999977778 69999998865531         235678


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCC
Q psy8250          72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQS  151 (212)
Q Consensus        72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~  151 (212)
                      +|+|||+..++|.+||.||+..... + ..+.++.+...++.++|+++.+.+++|+.|-.|||||+|||+|||||+++|+
T Consensus        84 vgmvfqqy~lwphltv~enlieap~-k-v~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpq  161 (242)
T COG4161          84 VGMVFQQYNLWPHLTVQENLIEAPC-R-VLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQ  161 (242)
T ss_pred             hhhhhhhhccCchhHHHHHHHhhhH-H-HhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCc
Confidence            9999999999999999999876432 1 1356777888899999999999999999999999999999999999999999


Q ss_pred             eEEecCCCC-CChhhHHHHHHHHHHHHhhcC-----cchHHHHHHH---HHHHHhcCeeecCCchh
Q psy8250         152 GFVPQHDLT-VDTLTVHEHMTLMARLKMDRN-----LHHVERARTV---DALLKELGLLKCRPADE  208 (212)
Q Consensus       152 llilDEPt~-lD~~~~~~~~~~l~~l~~~~~-----~h~~~~~~~~---~~~l~~g~~~~~~~~~~  208 (212)
                      +|++||||+ |||....++.++|++++..+.     ||..+.++..   +.+|.+|+++..|+.+-
T Consensus       162 vllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~  227 (242)
T COG4161         162 VLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC  227 (242)
T ss_pred             EEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhh
Confidence            999999999 999999999999999998653     7999998764   34788999999998654

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=100.00  E-value=1.8e-46  Score=306.91  Aligned_cols=204  Identities=22%  Similarity=0.290  Sum_probs=164.2

Q ss_pred             CcccccccCC-cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEc
Q psy8250           1 METFHPLFGD-TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVP   76 (212)
Q Consensus         1 ~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~   76 (212)
                      ++++++.|++ +.+++|+||++++|++++|+||||||||||+++|+|+++| .+|+|+++|.++..   ..+++.++|+|
T Consensus         5 ~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~   83 (229)
T cd03254           5 FENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDP-QKGQILIDGIDIRDISRKSLRSMIGVVL   83 (229)
T ss_pred             EEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC-CCCEEEECCEeHHHcCHHHHhhhEEEec
Confidence            4688999975 5699999999999999999999999999999999999988 69999999988743   23456799999


Q ss_pred             CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHH-----HHHHHHHHHc--CCccccCCCCCCCChHHHHHHHHHHHHhhC
Q psy8250          77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERA-----RTVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQTIIV  149 (212)
Q Consensus        77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LSgGqrqRv~lA~al~~~  149 (212)
                      |++.+++. |++||+.++....     ......     ..+.++++.+  ++....++++.+||||||||++|||||+.+
T Consensus        84 q~~~~~~~-tv~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~  157 (229)
T cd03254          84 QDTFLFSG-TIMENIRLGRPNA-----TDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRD  157 (229)
T ss_pred             CCchhhhh-HHHHHHhccCCCC-----CHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence            99988775 9999998642211     111111     1223444444  555556777899999999999999999999


Q ss_pred             CCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250         150 QSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       150 p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      |+++||||||+ ||+.++..++++|+++++..    .+|+.+.+..++  .+|++|+++..++.+++.+
T Consensus       158 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~  226 (229)
T cd03254         158 PKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA  226 (229)
T ss_pred             CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence            99999999999 99999999999999986422    279998875543  4788999999999888764

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=100.00  E-value=2.4e-45  Score=333.41  Aligned_cols=207  Identities=20%  Similarity=0.279  Sum_probs=174.2

Q ss_pred             CcccccccC-----------CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---
Q psy8250           1 METFHPLFG-----------DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---   66 (212)
Q Consensus         1 ~~~l~~~~~-----------~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---   66 (212)
                      ++++++.|+           ++.+|+++||+|++|++++|+||||||||||+|+|+|++ | .+|+|+++|+++...   
T Consensus       278 ~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~-~~G~i~~~g~~i~~~~~~  355 (529)
T PRK15134        278 VEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-N-SQGEIWFDGQPLHNLNRR  355 (529)
T ss_pred             ccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-C-CCcEEEECCEEccccchh
Confidence            478899995           357999999999999999999999999999999999988 5 599999999987431   


Q ss_pred             ---cccceEEEEcCCC--CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHH
Q psy8250          67 ---LMVKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRV  140 (212)
Q Consensus        67 ---~~~~~i~~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv  140 (212)
                         .+++.++|+||++  .+++.+||.||+.++...+. ...+..+...++.++++.+++. ...++++.+|||||||||
T Consensus       356 ~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv  434 (529)
T PRK15134        356 QLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQ-PTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRI  434 (529)
T ss_pred             hHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhcc-ccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHH
Confidence               1245699999997  47888999999988654321 0123334456788999999997 578999999999999999


Q ss_pred             HHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         141 ALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       141 ~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      +|||||+.+|++|||||||+ ||+.+++.++++|++++.+ .     ++||++.+... +  .+|++|++++.|+++++.
T Consensus       435 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  514 (529)
T PRK15134        435 AIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVF  514 (529)
T ss_pred             HHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCHHHHh
Confidence            99999999999999999999 9999999999999999764 2     37999988764 3  478899999999988874

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=2.9e-46  Score=343.13  Aligned_cols=202  Identities=21%  Similarity=0.223  Sum_probs=164.5

Q ss_pred             ccccc-ccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEcC
Q psy8250           2 ETFHP-LFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQ   77 (212)
Q Consensus         2 ~~l~~-~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~Q   77 (212)
                      +++++ +|+++.+|+|+||+|++|+.+||+||||||||||+++|+|++ | ++|+|.++|.++..   ..+++.++||+|
T Consensus       353 ~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p-~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q  430 (588)
T PRK11174        353 EDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P-YQGSLKINGIELRELDPESWRKHLSWVGQ  430 (588)
T ss_pred             EeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C-CCcEEEECCEecccCCHHHHHhheEEecC
Confidence            56775 446678999999999999999999999999999999999999 8 69999999998854   356788999999


Q ss_pred             CCCCCCCCCHHHHHHHHHhhhcccCCCHHHH-----HHHHHHHHHHc--CCccccCCCCCCCChHHHHHHHHHHHHhhCC
Q psy8250          78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVER-----ARTVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQTIIVQ  150 (212)
Q Consensus        78 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p  150 (212)
                      +|.+|+. |++||+.++..     ..+.++.     ...+.++++.+  |++.........||||||||++|||||+++|
T Consensus       431 ~~~LF~~-TI~eNI~~g~~-----~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~  504 (588)
T PRK11174        431 NPQLPHG-TLRDNVLLGNP-----DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPC  504 (588)
T ss_pred             CCcCCCc-CHHHHhhcCCC-----CCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCC
Confidence            9999876 99999998521     1121111     11233444444  4555555566789999999999999999999


Q ss_pred             CeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250         151 SGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       151 ~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      ++|||||||| ||+.+.+.+.+.|.++.+..    .+|+++.+..++  .++++|++++.|+.+++.+
T Consensus       505 ~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~~  572 (588)
T PRK11174        505 QLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQ  572 (588)
T ss_pred             CEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHHHh
Confidence            9999999999 99999999999999986543    379998887665  4788999999999988753

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.9e-45  Score=304.28  Aligned_cols=208  Identities=17%  Similarity=0.262  Sum_probs=173.0

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCC----CceEEEECCEeCCc-----ccccce
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD----VDGQILLNGLEVEK-----NLMVKV   71 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~----~~G~I~~~g~~~~~-----~~~~~~   71 (212)
                      ++++++.|++..+|+|+||++++|++++|+||||||||||+++|+|+++|.    .+|+|.++|+++..     ..+++.
T Consensus        10 ~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~   89 (261)
T PRK14258         10 VNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQ   89 (261)
T ss_pred             EeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhcc
Confidence            468999998878999999999999999999999999999999999999872    27999999988732     134567


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHHh
Q psy8250          72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQTI  147 (212)
Q Consensus        72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al~  147 (212)
                      ++|++|++.+++ .|+.||+.+......  .....+..+.+.++++.+++.    +..++++.+|||||+||++|||||+
T Consensus        90 i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~  166 (261)
T PRK14258         90 VSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALA  166 (261)
T ss_pred             EEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHh
Confidence            999999988887 899999987643221  012233345678899999874    3568889999999999999999999


Q ss_pred             hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHHH---HHHHh-----cCeeecCCchhhhc
Q psy8250         148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTVD---ALLKE-----LGLLKCRPADELNR  211 (212)
Q Consensus       148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~~---~~l~~-----g~~~~~~~~~~~~~  211 (212)
                      .+|+++||||||+ ||+.++..+.++|++++.+ .     .+|+++.+...+   .+|++     |+++..|+++++.+
T Consensus       167 ~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~~  245 (261)
T PRK14258        167 VKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKKIFN  245 (261)
T ss_pred             cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeCCHHHHHh
Confidence            9999999999999 9999999999999998643 2     379999887643   47888     99999999988753

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.8e-45  Score=307.43  Aligned_cols=205  Identities=19%  Similarity=0.260  Sum_probs=169.7

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCC----CCceEEEECCEeCCc-----ccccce
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQG----DVDGQILLNGLEVEK-----NLMVKV   71 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p----~~~G~I~~~g~~~~~-----~~~~~~   71 (212)
                      ++++++.|++..+|+|+||+|++|++++|+||||||||||+++|+|++.|    +++|+|+++|+++..     ...++.
T Consensus        13 i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~   92 (264)
T PRK14243         13 TENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRR   92 (264)
T ss_pred             EeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhh
Confidence            46899999888899999999999999999999999999999999998752    158999999998742     223567


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHHh
Q psy8250          72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQTI  147 (212)
Q Consensus        72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al~  147 (212)
                      ++|++|++.+++ .|+.||+.+......   .. ....+.+.++++.+++.    ...++++.+||||||||++|||||+
T Consensus        93 i~~v~q~~~~~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~  167 (264)
T PRK14243         93 IGMVFQKPNPFP-KSIYDNIAYGARING---YK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIA  167 (264)
T ss_pred             EEEEccCCcccc-ccHHHHHHhhhhhcC---cc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHh
Confidence            999999998887 499999987654321   11 12334566778888874    3567889999999999999999999


Q ss_pred             hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH---HHHH---------hcCeeecCCchhhh
Q psy8250         148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD---ALLK---------ELGLLKCRPADELN  210 (212)
Q Consensus       148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~---~~l~---------~g~~~~~~~~~~~~  210 (212)
                      .+|++|||||||+ ||+.++..++++|.++++..    .+|+++.+...+   .+|+         +|++++.|+++++.
T Consensus       168 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~~~~  247 (264)
T PRK14243        168 VQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKIF  247 (264)
T ss_pred             cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence            9999999999999 99999999999999997642    279999887653   3565         79999999998874

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=100.00  E-value=3.5e-45  Score=299.81  Aligned_cols=195  Identities=19%  Similarity=0.213  Sum_probs=164.0

Q ss_pred             eeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCC---CceEEEECCEeCCcccc-cceEEEEcCCCC--CCCCCC
Q psy8250          13 YKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD---VDGQILLNGLEVEKNLM-VKVSGFVPQHDL--TVDTLT   86 (212)
Q Consensus        13 ~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~---~~G~I~~~g~~~~~~~~-~~~i~~v~Q~~~--~~~~lt   86 (212)
                      +++|+||++++|++++|+||||||||||+++|+|+++|.   ++|+|+++|+++..... ++.++|++|++.  +++.+|
T Consensus         1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t   80 (230)
T TIGR02770         1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT   80 (230)
T ss_pred             CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence            578999999999999999999999999999999999871   49999999998854333 357999999985  556789


Q ss_pred             HHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc---cccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CC
Q psy8250          87 VHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL---KCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VD  162 (212)
Q Consensus        87 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~---~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD  162 (212)
                      +.+|+.+......   ........++.++++.+++.   +..++.+.+|||||||||+|||||+.+|+++||||||+ ||
T Consensus        81 ~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD  157 (230)
T TIGR02770        81 MGNHAIETLRSLG---KLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLD  157 (230)
T ss_pred             HHHHHHHHHHHcC---ccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence            9999877543221   11233456788999999997   56889999999999999999999999999999999999 99


Q ss_pred             hhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         163 TLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       163 ~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      +.++..+.++|++++.+ .     .+|+++++... +  .+|++|+++..|+++++.
T Consensus       158 ~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  214 (230)
T TIGR02770       158 VVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIF  214 (230)
T ss_pred             HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            99999999999998764 2     26999988654 3  478899999999988874

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=100.00  E-value=4e-45  Score=293.04  Aligned_cols=179  Identities=21%  Similarity=0.227  Sum_probs=155.8

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc--cccceEEEEcCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN--LMVKVSGFVPQH   78 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~--~~~~~i~~v~Q~   78 (212)
                      ++++++.|+++.+++++||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++...  ..++.++|++|+
T Consensus         3 ~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~i~~~~q~   81 (198)
T TIGR01189         3 ARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP-DSGEVRWNGTALAEQRDEPHRNILYLGHL   81 (198)
T ss_pred             EEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CccEEEECCEEcccchHHhhhheEEeccC
Confidence            46899999988999999999999999999999999999999999999988 699999999987432  234678999999


Q ss_pred             CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250          79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD  158 (212)
Q Consensus        79 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP  158 (212)
                      +.+++.+|+.+|+.+......    .   ....+.++++.+++.+..++++.+||||||||++||||++.+|+++|||||
T Consensus        82 ~~~~~~~tv~~~l~~~~~~~~----~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP  154 (198)
T TIGR01189        82 PGLKPELSALENLHFWAAIHG----G---AQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEP  154 (198)
T ss_pred             cccccCCcHHHHHHHHHHHcC----C---cHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            888888999999987644321    1   134578899999999888999999999999999999999999999999999


Q ss_pred             CC-CChhhHHHHHHHHHHHHhhc-----CcchHHH
Q psy8250         159 LT-VDTLTVHEHMTLMARLKMDR-----NLHHVER  187 (212)
Q Consensus       159 t~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~  187 (212)
                      |+ ||+.++..++++|.+++++.     .+|+...
T Consensus       155 t~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~  189 (198)
T TIGR01189       155 TTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG  189 (198)
T ss_pred             CcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc
Confidence            99 99999999999999986553     2687643

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=2e-45  Score=295.30  Aligned_cols=182  Identities=21%  Similarity=0.228  Sum_probs=158.2

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc--ccccceEEEEcCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK--NLMVKVSGFVPQH   78 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~--~~~~~~i~~v~Q~   78 (212)
                      ++++++.|++..+|+++||++++||+++|+||||||||||+++|+|+.+| ++|+|+++|.++..  ...++.++|++|+
T Consensus         4 ~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~v~~~g~~~~~~~~~~~~~i~~~~q~   82 (200)
T PRK13540          4 VIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNP-EKGEILFERQSIKKDLCTYQKQLCFVGHR   82 (200)
T ss_pred             EEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCeeEEECCCccccCHHHHHhheEEeccc
Confidence            47899999888899999999999999999999999999999999999998 69999999988753  2345679999999


Q ss_pred             CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250          79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD  158 (212)
Q Consensus        79 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP  158 (212)
                      +.+++.+|+.+|+.+.....      .  ....+.++++.+++.+..++++.+||+||+||++||||++.+|+++|||||
T Consensus        83 ~~~~~~~tv~~~~~~~~~~~------~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP  154 (200)
T PRK13540         83 SGINPYLTLRENCLYDIHFS------P--GAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEP  154 (200)
T ss_pred             cccCcCCCHHHHHHHHHhcC------c--chHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            98888999999998754211      1  123678899999998878889999999999999999999999999999999


Q ss_pred             CC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH
Q psy8250         159 LT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV  191 (212)
Q Consensus       159 t~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~  191 (212)
                      |+ ||+.++..+.++|++++++.     .+|+.+.+...
T Consensus       155 ~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~  193 (200)
T PRK13540        155 LVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKA  193 (200)
T ss_pred             CcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhcccc
Confidence            99 99999999999999986543     36987776443

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.1e-45  Score=326.41  Aligned_cols=208  Identities=22%  Similarity=0.263  Sum_probs=183.8

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc----cccceEEEEc
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN----LMVKVSGFVP   76 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~----~~~~~i~~v~   76 (212)
                      +++++|+|++.++|++|||++.+||++||+|+||||||||+|+|+|.++| ++|+|+++|+++...    ....-|+.|+
T Consensus        11 ~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p-~~G~I~~~G~~~~~~sp~~A~~~GI~~V~   89 (500)
T COG1129          11 LRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPP-DSGEILIDGKPVAFSSPRDALAAGIATVH   89 (500)
T ss_pred             eecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccC-CCceEEECCEEccCCCHHHHHhCCcEEEe
Confidence            57999999999999999999999999999999999999999999999999 699999999998532    2345689999


Q ss_pred             CCCCCCCCCCHHHHHHHHHhhhc-ccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEe
Q psy8250          77 QHDLTVDTLTVHEHMTLMARLKM-DRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVP  155 (212)
Q Consensus        77 Q~~~~~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llil  155 (212)
                      |+..++|++||.||+.++..... ..-+.++...+++.++|+.+++....+.++.+||.||||.|+|||||..++++|||
T Consensus        90 QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIl  169 (500)
T COG1129          90 QELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLIL  169 (500)
T ss_pred             echhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            99999999999999988655332 22346778888999999999996558999999999999999999999999999999


Q ss_pred             cCCCC-CChhhHHHHHHHHHHHHhhcC-----cchHHHHHHHH---HHHHhcCeeecCC-chhh
Q psy8250         156 QHDLT-VDTLTVHEHMTLMARLKMDRN-----LHHVERARTVD---ALLKELGLLKCRP-ADEL  209 (212)
Q Consensus       156 DEPt~-lD~~~~~~~~~~l~~l~~~~~-----~h~~~~~~~~~---~~l~~g~~~~~~~-~~~~  209 (212)
                      ||||+ |+....+.+++++++++.++.     +|.++++.+.+   .+|+||+.+.+.+ ..++
T Consensus       170 DEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~  233 (500)
T COG1129         170 DEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAET  233 (500)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCC
Confidence            99999 999999999999999998763     79999998753   4899999998888 3444

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.7e-45  Score=304.48  Aligned_cols=207  Identities=22%  Similarity=0.314  Sum_probs=172.4

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECC------EeCCc---ccccce
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG------LEVEK---NLMVKV   71 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g------~~~~~---~~~~~~   71 (212)
                      ++++++.|++..+|+|+||++.+|++++|+||||||||||+++|+|++.| ++|+|.++|      .++..   ...++.
T Consensus        13 ~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~-~~G~v~~~G~~~~~g~~~~~~~~~~~~~~   91 (257)
T PRK14246         13 ISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEI-YDSKIKVDGKVLYFGKDIFQIDAIKLRKE   91 (257)
T ss_pred             eeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CcCceeEcCEEEECCcccccCCHHHHhcc
Confidence            47899999999999999999999999999999999999999999999988 587666665      44321   124567


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHHh
Q psy8250          72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQTI  147 (212)
Q Consensus        72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al~  147 (212)
                      ++|++|++.+++.+|+++|+.++.....  .....+....+.++++.+++.    +..++.+..||+|||||++|||||+
T Consensus        92 i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~  169 (257)
T PRK14246         92 VGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALA  169 (257)
T ss_pred             eEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence            9999999999999999999988644321  112334456788999999996    3567889999999999999999999


Q ss_pred             hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      .+|+++||||||+ ||+.++..+.++|.+++...    .+|+.+.+... +  .+|++|+++..|+++++.
T Consensus       170 ~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~  240 (257)
T PRK14246        170 LKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIF  240 (257)
T ss_pred             cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            9999999999999 99999999999999986543    37999988653 3  478899999999988775

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.3e-45  Score=302.58  Aligned_cols=207  Identities=19%  Similarity=0.297  Sum_probs=172.4

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCC--C--CCceEEEECCEeCCc-----ccccce
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ--G--DVDGQILLNGLEVEK-----NLMVKV   71 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~--p--~~~G~I~~~g~~~~~-----~~~~~~   71 (212)
                      ++++++.|+++.+++|+||+|.+|++++|+||||||||||+++|+|+..  |  +++|+|.++|.++..     ...++.
T Consensus         6 ~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~   85 (250)
T PRK14266          6 VENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKK   85 (250)
T ss_pred             EEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhh
Confidence            4688999988889999999999999999999999999999999999864  2  158999999998743     134567


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHHh
Q psy8250          72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQTI  147 (212)
Q Consensus        72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al~  147 (212)
                      ++|+||++.+++. |+.+|+.+......  ..........+.++++.+++.    ...++++.+||+|||||++|||||+
T Consensus        86 i~~~~q~~~~~~~-t~~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~  162 (250)
T PRK14266         86 VGMVFQKPNPFPK-SIFDNVAYGLRIHG--EDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIA  162 (250)
T ss_pred             eEEEecCCccCcc-hHHHHHHhHHhhcC--CCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHH
Confidence            9999999988875 99999987643221  112233456788899999874    3468889999999999999999999


Q ss_pred             hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH---HHHHhcCeeecCCchhhh
Q psy8250         148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD---ALLKELGLLKCRPADELN  210 (212)
Q Consensus       148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~  210 (212)
                      .+|++|||||||+ ||+.++..+.++|++++...    .+|+.+++...+   .++++|+++..|+++++.
T Consensus       163 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~  233 (250)
T PRK14266        163 VSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIF  233 (250)
T ss_pred             cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence            9999999999999 99999999999999986532    269999887754   257899999999988874

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=100.00  E-value=2.6e-45  Score=332.58  Aligned_cols=206  Identities=22%  Similarity=0.233  Sum_probs=172.3

Q ss_pred             CcccccccC-----CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEEC-CEe---CCcc-----
Q psy8250           1 METFHPLFG-----DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLN-GLE---VEKN-----   66 (212)
Q Consensus         1 ~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~-g~~---~~~~-----   66 (212)
                      ++++++.|+     ++.+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++ |.+   +...     
T Consensus       282 ~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p-~~G~i~~~~g~~~~~~~~~~~~~~  360 (520)
T TIGR03269       282 VRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEP-TSGEVNVRVGDEWVDMTKPGPDGR  360 (520)
T ss_pred             EeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEEecCCccccccccchhhH
Confidence            367899994     25699999999999999999999999999999999999988 69999996 542   2211     


Q ss_pred             -cccceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-----ccCCCCCCCChHHHHHH
Q psy8250          67 -LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-----CKNSVLNVLSGGERKRV  140 (212)
Q Consensus        67 -~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----~~~~~~~~LSgGqrqRv  140 (212)
                       ..++.++|+||++.+++.+|+.||+.+.....    .+......++.++++.+++..     ..++++.+|||||||||
T Consensus       361 ~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv  436 (520)
T TIGR03269       361 GRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRV  436 (520)
T ss_pred             HHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHH
Confidence             12456999999998999999999998754321    123334467889999999974     57899999999999999


Q ss_pred             HHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHHH---HHHHhcCeeecCCchhhh
Q psy8250         141 ALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTVD---ALLKELGLLKCRPADELN  210 (212)
Q Consensus       141 ~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~  210 (212)
                      +|||||+.+|++|||||||+ ||+.+++.++++|++++++ +     .+||++.+...+   .+|++|++++.|+++++.
T Consensus       437 ~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  516 (520)
T TIGR03269       437 ALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIV  516 (520)
T ss_pred             HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            99999999999999999999 9999999999999999765 2     379999887643   478899999999998876


Q ss_pred             c
Q psy8250         211 R  211 (212)
Q Consensus       211 ~  211 (212)
                      +
T Consensus       517 ~  517 (520)
T TIGR03269       517 E  517 (520)
T ss_pred             h
Confidence            5

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.6e-45  Score=306.01  Aligned_cols=205  Identities=20%  Similarity=0.297  Sum_probs=169.2

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCC----CceEEEECCEeCCc-----ccccce
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD----VDGQILLNGLEVEK-----NLMVKV   71 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~----~~G~I~~~g~~~~~-----~~~~~~   71 (212)
                      ++++++.|+++.+|+++||+|++||+++|+||||||||||+++|+|++.|.    .+|+|.++|+++..     ..+++.
T Consensus        23 ~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~  102 (274)
T PRK14265         23 VEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQ  102 (274)
T ss_pred             EeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhc
Confidence            368899998888999999999999999999999999999999999997531    48999999998742     134567


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHHh
Q psy8250          72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQTI  147 (212)
Q Consensus        72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al~  147 (212)
                      ++|+||++.+++. |+.+|+.+......   .. ......+.++++.+++.    +..++++.+|||||+||++|||||+
T Consensus       103 i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~  177 (274)
T PRK14265        103 VGMVFQRPNPFPK-SIYENIAFAPRANG---YK-GNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIA  177 (274)
T ss_pred             EEEEccCCccccc-cHHHHHHhHHHhcC---ch-HHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHh
Confidence            9999999988875 99999987643221   11 12234466778888863    4568889999999999999999999


Q ss_pred             hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHH---------hcCeeecCCchhhh
Q psy8250         148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLK---------ELGLLKCRPADELN  210 (212)
Q Consensus       148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~---------~g~~~~~~~~~~~~  210 (212)
                      .+|++|||||||+ ||+.++..+.++|.++++..    .+|+.+.+... +  .+|+         +|+++..|+++++.
T Consensus       178 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~~  257 (274)
T PRK14265        178 MKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMF  257 (274)
T ss_pred             hCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence            9999999999999 99999999999999997542    27999988764 2  3665         89999999998874

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.5e-45  Score=330.78  Aligned_cols=209  Identities=19%  Similarity=0.252  Sum_probs=173.3

Q ss_pred             CcccccccC---CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc----cccceEE
Q psy8250           1 METFHPLFG---DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN----LMVKVSG   73 (212)
Q Consensus         1 ~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~----~~~~~i~   73 (212)
                      ++++++.|+   ++.+++|+||+|++|++++|+||||||||||+|+|+|+++|+++|+|+++|+++...    ..++.++
T Consensus       262 ~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~  341 (506)
T PRK13549        262 VRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIA  341 (506)
T ss_pred             EecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCE
Confidence            368899993   457999999999999999999999999999999999998832599999999987532    1245689


Q ss_pred             EEcCCC---CCCCCCCHHHHHHHHHhhhccc-C-CCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHHHh
Q psy8250          74 FVPQHD---LTVDTLTVHEHMTLMARLKMDR-N-LHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQTI  147 (212)
Q Consensus        74 ~v~Q~~---~~~~~ltv~e~l~~~~~~~~~~-~-~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~al~  147 (212)
                      |++|++   .+++.+|+.||+.+........ . .........+.++++.+++. +..++++.+|||||||||+|||||+
T Consensus       342 ~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~  421 (506)
T PRK13549        342 MVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLL  421 (506)
T ss_pred             EeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHh
Confidence            999996   4778899999998753211100 0 12334456788999999996 5789999999999999999999999


Q ss_pred             hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhh
Q psy8250         148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADEL  209 (212)
Q Consensus       148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~  209 (212)
                      .+|++|||||||+ ||+.+++.++++|.++++++     .+||++.+... +  .+|++|+++..++++++
T Consensus       422 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~  492 (506)
T PRK13549        422 LNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNL  492 (506)
T ss_pred             hCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccccC
Confidence            9999999999999 99999999999999997654     37999988764 3  47889999999988876

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=100.00  E-value=7.8e-45  Score=296.84  Aligned_cols=191  Identities=18%  Similarity=0.147  Sum_probs=159.0

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL   80 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~   80 (212)
                      +++++++|+++.+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|+++|+++..         ..+...
T Consensus        25 ~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p-~~G~i~~~g~~~~~---------~~~~~~   94 (224)
T cd03220          25 ILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPP-DSGTVTVRGRVSSL---------LGLGGG   94 (224)
T ss_pred             hhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEchh---------hccccc
Confidence            35788889899999999999999999999999999999999999999998 69999999987531         111233


Q ss_pred             CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC
Q psy8250          81 TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT  160 (212)
Q Consensus        81 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~  160 (212)
                      +++.+|+.||+.+......   .........+.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||+
T Consensus        95 ~~~~~tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~  171 (224)
T cd03220          95 FNPELTGRENIYLNGRLLG---LSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLA  171 (224)
T ss_pred             CCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence            4567899999988654321   2233445567889999999988999999999999999999999999999999999999


Q ss_pred             -CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecC
Q psy8250         161 -VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCR  204 (212)
Q Consensus       161 -lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~  204 (212)
                       ||+.++..++++|.+++.+.     .+|+.+++... +  .++++|++++.|
T Consensus       172 gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g  224 (224)
T cd03220         172 VGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG  224 (224)
T ss_pred             cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence             99999999999999987653     26999887654 3  467788887654

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PLN03211 ABC transporter G-25; Provisional

Probab=100.00  E-value=7e-45  Score=336.60  Aligned_cols=209  Identities=30%  Similarity=0.490  Sum_probs=176.4

Q ss_pred             cccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCC-CceEEEECCEeCCcccccceEEEEcCCCC
Q psy8250           2 ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD-VDGQILLNGLEVEKNLMVKVSGFVPQHDL   80 (212)
Q Consensus         2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~-~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~   80 (212)
                      +++++.|+++.+|+|||+++++||++||+||||||||||+++|+|..+|. .+|+|.+||+++... .++.++||+|++.
T Consensus        72 ~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~  150 (659)
T PLN03211         72 SDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQ-ILKRTGFVTQDDI  150 (659)
T ss_pred             ccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchh-hccceEEECcccc
Confidence            46788998889999999999999999999999999999999999998772 389999999987542 3456899999999


Q ss_pred             CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccC-----CCCCCCChHHHHHHHHHHHHhhCCCeEEe
Q psy8250          81 TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKN-----SVLNVLSGGERKRVALAVQTIIVQSGFVP  155 (212)
Q Consensus        81 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LSgGqrqRv~lA~al~~~p~llil  155 (212)
                      +++.+||+||+.+.+..+.......++..++++++++.+|+.+..+     +.+.+||||||||++||+||+.+|++|||
T Consensus       151 l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlL  230 (659)
T PLN03211        151 LYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL  230 (659)
T ss_pred             cCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEE
Confidence            9999999999998765442222344455677899999999987654     45678999999999999999999999999


Q ss_pred             cCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHH-HHHH-HH--HHHHhcCeeecCCchhhhc
Q psy8250         156 QHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVE-RART-VD--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       156 DEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~-~~~~-~~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      ||||+ ||+.++.+++++|+++++++     .+|+++ .+.. .+  .+|++|++++.|+++++.+
T Consensus       231 DEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~  296 (659)
T PLN03211        231 DEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA  296 (659)
T ss_pred             eCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence            99999 99999999999999998653     269876 3443 33  4788999999999988753

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=100.00  E-value=6.6e-45  Score=330.52  Aligned_cols=207  Identities=20%  Similarity=0.272  Sum_probs=173.0

Q ss_pred             CcccccccCC----cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCC----CceEEEECCEeCCcc------
Q psy8250           1 METFHPLFGD----TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD----VDGQILLNGLEVEKN------   66 (212)
Q Consensus         1 ~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~----~~G~I~~~g~~~~~~------   66 (212)
                      ++++++.|++    +.+|+++||+|++||++||+||||||||||+|+|+|+++|.    ++|+|.++|.++...      
T Consensus         8 ~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~   87 (529)
T PRK15134          8 IENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLR   87 (529)
T ss_pred             EeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHH
Confidence            4688999963    57999999999999999999999999999999999999751    489999999987432      


Q ss_pred             cc-cceEEEEcCCCC--CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc---ccCCCCCCCChHHHHHH
Q psy8250          67 LM-VKVSGFVPQHDL--TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK---CKNSVLNVLSGGERKRV  140 (212)
Q Consensus        67 ~~-~~~i~~v~Q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~---~~~~~~~~LSgGqrqRv  140 (212)
                      .. ++.+||+||++.  +++.+++.+++.+.....  ...+..+...++.++++.+|+.+   ..++++.+|||||||||
T Consensus        88 ~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv  165 (529)
T PRK15134         88 GVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLH--RGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRV  165 (529)
T ss_pred             HHhcCceEEEecCchhhcCchhhHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHH
Confidence            11 246999999975  567789999987654321  12234455677899999999975   46889999999999999


Q ss_pred             HHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhh
Q psy8250         141 ALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADEL  209 (212)
Q Consensus       141 ~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~  209 (212)
                      +|||||+.+|++|||||||+ ||+.++..++++|++++.+ .     +||+++.+... +  .+|++|+++..|+++++
T Consensus       166 ~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~  244 (529)
T PRK15134        166 MIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATL  244 (529)
T ss_pred             HHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence            99999999999999999999 9999999999999999765 2     37999988764 3  47889999999988876

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=100.00  E-value=6.6e-46  Score=305.28  Aligned_cols=202  Identities=20%  Similarity=0.281  Sum_probs=162.5

Q ss_pred             CcccccccCC---cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEE
Q psy8250           1 METFHPLFGD---TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGF   74 (212)
Q Consensus         1 ~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~   74 (212)
                      ++++++.|++   ..+++++||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++..   ...++.++|
T Consensus         3 i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~   81 (238)
T cd03249           3 FKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDP-TSGEILLDGVDIRDLNLRWLRSQIGL   81 (238)
T ss_pred             EEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCC-CCCEEEECCEehhhcCHHHHHhhEEE
Confidence            4688999964   4699999999999999999999999999999999999988 69999999988743   123456999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHH-----HHHHHHHHc--CCccccCCCCCCCChHHHHHHHHHHHHh
Q psy8250          75 VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR-----TVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQTI  147 (212)
Q Consensus        75 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgGqrqRv~lA~al~  147 (212)
                      ++|++.+++ .|++||+.+.....     .......     .+.++++.+  ++....++++.+||||||||++|||||+
T Consensus        82 ~~q~~~~~~-~tv~e~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~  155 (238)
T cd03249          82 VSQEPVLFD-GTIAENIRYGKPDA-----TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALL  155 (238)
T ss_pred             ECCchhhhh-hhHHHHhhccCCCC-----CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHh
Confidence            999988776 59999998743211     1111111     123344444  5556677888999999999999999999


Q ss_pred             hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHHH--HHHHhcCeeecCCchhhh
Q psy8250         148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTVD--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~  210 (212)
                      .+|+++||||||+ ||+.++..++++|++++ ++     .+|+++.+..++  .+|++|++++.++++++.
T Consensus       156 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~  225 (238)
T cd03249         156 RNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELM  225 (238)
T ss_pred             cCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHh
Confidence            9999999999999 99999999999999987 43     279998876433  478899999999887764

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=100.00  E-value=1.3e-44  Score=299.84  Aligned_cols=208  Identities=19%  Similarity=0.232  Sum_probs=170.0

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcC--CCCCCceEEEECCEeCCcc---cccc-eEEE
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQR--IQGDVDGQILLNGLEVEKN---LMVK-VSGF   74 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~--~~p~~~G~I~~~g~~~~~~---~~~~-~i~~   74 (212)
                      ++++++.|+++.+|+++||++++|+++||+||||||||||+++|+|+  ++| ++|+|+++|.++...   ...+ .++|
T Consensus        10 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~   88 (252)
T CHL00131         10 IKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKI-LEGDILFKGESILDLEPEERAHLGIFL   88 (252)
T ss_pred             EEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcC-CCceEEECCEEcccCChhhhheeeEEE
Confidence            46889999888899999999999999999999999999999999998  467 699999999987532   1222 4789


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHhhhcc----cCCCHHHHHHHHHHHHHHcCCc-cccCCCCC-CCChHHHHHHHHHHHHhh
Q psy8250          75 VPQHDLTVDTLTVHEHMTLMARLKMD----RNLHHVERARTVDALLKELGLL-KCKNSVLN-VLSGGERKRVALAVQTII  148 (212)
Q Consensus        75 v~Q~~~~~~~ltv~e~l~~~~~~~~~----~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~-~LSgGqrqRv~lA~al~~  148 (212)
                      ++|++.+++.+|+.+++.+.......    ......+....+.++++.+++. ...++.+. .|||||+||++|||||+.
T Consensus        89 ~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~  168 (252)
T CHL00131         89 AFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALL  168 (252)
T ss_pred             EeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHc
Confidence            99999999999999998775432110    0011223345678899999997 46788887 599999999999999999


Q ss_pred             CCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH--H--HHHHhcCeeecCCchhh
Q psy8250         149 VQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV--D--ALLKELGLLKCRPADEL  209 (212)
Q Consensus       149 ~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~--~--~~l~~g~~~~~~~~~~~  209 (212)
                      +|+++||||||+ ||+.++..++++|+++++++     .+|+.+.+...  +  .+|++|++++.|++++.
T Consensus       169 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  239 (252)
T CHL00131        169 DSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAELA  239 (252)
T ss_pred             CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChhhh
Confidence            999999999999 99999999999999987543     27999887653  3  36789999999988743

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=100.00  E-value=1.2e-45  Score=300.39  Aligned_cols=193  Identities=21%  Similarity=0.246  Sum_probs=157.7

Q ss_pred             CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250           1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV   75 (212)
Q Consensus         1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v   75 (212)
                      ++++++.|++  +.+++|+||+|++|++++|+||||||||||+++|+|+.+| ++|+|+++|.++..   ...++.++|+
T Consensus         5 ~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~   83 (220)
T cd03245           5 FRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKP-TSGSVLLDGTDIRQLDPADLRRNIGYV   83 (220)
T ss_pred             EEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC-CCCeEEECCEEhHHCCHHHHHhhEEEe
Confidence            3688999975  5699999999999999999999999999999999999988 69999999998743   1234579999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCC-----------CCCCChHHHHHHHHHH
Q psy8250          76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSV-----------LNVLSGGERKRVALAV  144 (212)
Q Consensus        76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgGqrqRv~lA~  144 (212)
                      +|++.+++ .|+.||+.+....     ..    ...+.++++.+++.+..++.           +.+||||||||++|||
T Consensus        84 ~q~~~~~~-~tv~e~l~~~~~~-----~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~  153 (220)
T cd03245          84 PQDVTLFY-GTLRDNITLGAPL-----AD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALAR  153 (220)
T ss_pred             CCCCcccc-chHHHHhhcCCCC-----CC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHH
Confidence            99998876 5999998763211     11    23456778888887666654           4699999999999999


Q ss_pred             HHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecC
Q psy8250         145 QTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCR  204 (212)
Q Consensus       145 al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~  204 (212)
                      ||+.+|++|||||||+ ||+.++..++++|++++.+.    .+|+.+.+..++  .++++|++++.|
T Consensus       154 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~  220 (220)
T cd03245         154 ALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG  220 (220)
T ss_pred             HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence            9999999999999999 99999999999999987542    379998764333  367788876543

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.5e-44  Score=301.52  Aligned_cols=204  Identities=19%  Similarity=0.262  Sum_probs=170.0

Q ss_pred             cccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCC----CCceEEEECCEeCCc-----ccccceE
Q psy8250           2 ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQG----DVDGQILLNGLEVEK-----NLMVKVS   72 (212)
Q Consensus         2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p----~~~G~I~~~g~~~~~-----~~~~~~i   72 (212)
                      +.+++.|++..+++|+||++++|++++|+||||||||||+++|+|++.|    +.+|+|+++|.++..     ..+++.+
T Consensus        12 ~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i   91 (261)
T PRK14263         12 KLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYI   91 (261)
T ss_pred             EeEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhce
Confidence            5678889988999999999999999999999999999999999999875    159999999998742     1245679


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc----ccCCCCCCCChHHHHHHHHHHHHhh
Q psy8250          73 GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK----CKNSVLNVLSGGERKRVALAVQTII  148 (212)
Q Consensus        73 ~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----~~~~~~~~LSgGqrqRv~lA~al~~  148 (212)
                      +|+||++.++ .+|+.||+.+....+.   . .......+.++++.+++.+    ..++++.+||+||+||++|||||+.
T Consensus        92 ~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~  166 (261)
T PRK14263         92 GMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIAT  166 (261)
T ss_pred             EEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence            9999999877 5899999988654321   1 1233457888999999853    3467788999999999999999999


Q ss_pred             CCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHH--------hcCeeecCCchhhh
Q psy8250         149 VQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLK--------ELGLLKCRPADELN  210 (212)
Q Consensus       149 ~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~--------~g~~~~~~~~~~~~  210 (212)
                      +|++|||||||+ ||+.++..++++|+++++..    .+|+++.+... +  .+|+        +|++++.|+++++.
T Consensus       167 ~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~~  244 (261)
T PRK14263        167 EPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIF  244 (261)
T ss_pred             CCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeCCHHHHH
Confidence            999999999999 99999999999999996432    26999987664 3  3563        89999999988874

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.5e-44  Score=307.66  Aligned_cols=209  Identities=21%  Similarity=0.319  Sum_probs=172.3

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCC----CCceEEEECCEeCCc-----ccccce
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQG----DVDGQILLNGLEVEK-----NLMVKV   71 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p----~~~G~I~~~g~~~~~-----~~~~~~   71 (212)
                      ++++++.|+++.+|+++||+|.+|++++|+||||||||||+++|+|+++|    +++|+|.++|.++..     ..+++.
T Consensus        48 i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~  127 (305)
T PRK14264         48 VEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKR  127 (305)
T ss_pred             EEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhc
Confidence            46889999888899999999999999999999999999999999999862    269999999998742     123567


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHhhhcc---------cCCC-HHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHH
Q psy8250          72 SGFVPQHDLTVDTLTVHEHMTLMARLKMD---------RNLH-HVERARTVDALLKELGLL----KCKNSVLNVLSGGER  137 (212)
Q Consensus        72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~---------~~~~-~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqr  137 (212)
                      ++|+||++.+++. |++||+.+.......         .... .......+.++++.+++.    +..++++.+|||||+
T Consensus       128 i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~  206 (305)
T PRK14264        128 VGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQ  206 (305)
T ss_pred             eEEEccCCccccc-cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHH
Confidence            9999999988874 999999986532110         0011 122345678899999874    456888999999999


Q ss_pred             HHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-HH---HHHhcCeeecCCchh
Q psy8250         138 KRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-DA---LLKELGLLKCRPADE  208 (212)
Q Consensus       138 qRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~~---~l~~g~~~~~~~~~~  208 (212)
                      ||++|||||+.+|++|||||||+ ||+.++..++++|++++.+.    .+|+++.+... +.   +|++|+++..|++++
T Consensus       207 qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~G~i~~~g~~~~  286 (305)
T PRK14264        207 QRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDDTDK  286 (305)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecCCEEEEeCCHHH
Confidence            99999999999999999999999 99999999999999997653    37999988663 42   468999999999887


Q ss_pred             hh
Q psy8250         209 LN  210 (212)
Q Consensus       209 ~~  210 (212)
                      +.
T Consensus       287 ~~  288 (305)
T PRK14264        287 IF  288 (305)
T ss_pred             HH
Confidence            74

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=100.00  E-value=2.6e-44  Score=293.25  Aligned_cols=186  Identities=22%  Similarity=0.248  Sum_probs=155.6

Q ss_pred             CcccccccCC-------cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEEC--CE--eCCcc---
Q psy8250           1 METFHPLFGD-------TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLN--GL--EVEKN---   66 (212)
Q Consensus         1 ~~~l~~~~~~-------~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~--g~--~~~~~---   66 (212)
                      ++++++.|++       ..+|+|+||+|.+|++++|+||||||||||+++|+|+++| ++|+|+++  |.  ++...   
T Consensus         4 ~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~~~g~~~~~~~~~~~   82 (224)
T TIGR02324         4 VEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLP-DSGRILVRHEGAWVDLAQASPR   82 (224)
T ss_pred             EEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCeEEEecCCCccchhhcCHH
Confidence            4789999962       4699999999999999999999999999999999999998 69999998  43  43211   


Q ss_pred             c----ccceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-ccCCCCCCCChHHHHHHH
Q psy8250          67 L----MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVA  141 (212)
Q Consensus        67 ~----~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqrqRv~  141 (212)
                      .    .++.++|++|++.+++.+|+.||+.+.....   ........+.+.++++.+|+.+ ..++++.+||+|||||++
T Consensus        83 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~  159 (224)
T TIGR02324        83 EVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVN  159 (224)
T ss_pred             HHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHH
Confidence            1    2346899999999999999999998754322   1223344567788999999976 457899999999999999


Q ss_pred             HHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHH
Q psy8250         142 LAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERART  190 (212)
Q Consensus       142 lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~  190 (212)
                      |||||+.+|+++||||||+ ||+.++..+.++|++++.+.     .+|+.+.+..
T Consensus       160 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~  214 (224)
T TIGR02324       160 IARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVREL  214 (224)
T ss_pred             HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence            9999999999999999999 99999999999999997653     2699887754

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=100.00  E-value=9.9e-45  Score=300.43  Aligned_cols=200  Identities=25%  Similarity=0.301  Sum_probs=168.1

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEEEcC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGFVPQ   77 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~v~Q   77 (212)
                      ++++++.    .+|+++||++++|++++|+||||||||||+++|+|++ | .+|+|.++|+++...   .+++.++|+||
T Consensus         3 ~~~l~~~----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~-~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~q   76 (248)
T PRK03695          3 LNDVAVS----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-P-GSGSIQFAGQPLEAWSAAELARHRAYLSQ   76 (248)
T ss_pred             ccccchh----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC-C-CCeEEEECCEecCcCCHHHHhhheEEecc
Confidence            3567775    3899999999999999999999999999999999987 5 389999999987532   23456899999


Q ss_pred             CCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhh-------CC
Q psy8250          78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTII-------VQ  150 (212)
Q Consensus        78 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~-------~p  150 (212)
                      ++.+++.+|+.+|+.+.....    .......+++.++++.+++.+..++++.+||||||||++|||||+.       +|
T Consensus        77 ~~~~~~~~tv~~nl~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p  152 (248)
T PRK03695         77 QQTPPFAMPVFQYLTLHQPDK----TRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAG  152 (248)
T ss_pred             cCccCCCccHHHHHHhcCccC----CCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCC
Confidence            988888899999998753211    1223345678899999999988899999999999999999999998       67


Q ss_pred             CeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         151 SGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       151 ~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      ++|||||||+ ||+.++..+.++|++++.+.     .+|+++.+... +  .+|++|+++..|+++++.
T Consensus       153 ~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  221 (248)
T PRK03695        153 QLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVL  221 (248)
T ss_pred             CEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence            9999999999 99999999999999997643     27999987664 3  478899999999987763

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.5e-44  Score=310.21  Aligned_cols=206  Identities=18%  Similarity=0.252  Sum_probs=171.0

Q ss_pred             CcccccccC--CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCC----CCceEEEECCEeCCc-----cccc
Q psy8250           1 METFHPLFG--DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQG----DVDGQILLNGLEVEK-----NLMV   69 (212)
Q Consensus         1 ~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p----~~~G~I~~~g~~~~~-----~~~~   69 (212)
                      +++++++|.  ...+|+|+||+|++|+++||+||||||||||+++|+|+..+    +++|+|.++|.++..     ..++
T Consensus        83 ~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr  162 (329)
T PRK14257         83 IRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELR  162 (329)
T ss_pred             EEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhh
Confidence            368899994  35699999999999999999999999999999999999852    159999999999852     1346


Q ss_pred             ceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCC-HHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHH
Q psy8250          70 KVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLH-HVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAV  144 (212)
Q Consensus        70 ~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~  144 (212)
                      +.++|+||+|.+++ .|+++|+.|+....   ... .......+.++++.+++.    ...++++.+||||||||++|||
T Consensus       163 ~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LAR  238 (329)
T PRK14257        163 TRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIAR  238 (329)
T ss_pred             ccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHH
Confidence            67999999998875 69999999865332   111 222234467888888873    3567889999999999999999


Q ss_pred             HHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHH-HH--HHHHhcCeeecCCchhhh
Q psy8250         145 QTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERART-VD--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       145 al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~-~~--~~l~~g~~~~~~~~~~~~  210 (212)
                      ||+.+|++|||||||+ ||+.+...+.+.|+++.+..    .+|+++.+.. ++  .+|++|++++.|+++++-
T Consensus       239 Al~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~  312 (329)
T PRK14257        239 AIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIF  312 (329)
T ss_pred             HHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            9999999999999999 99999999999999987643    3799999876 33  478899999999999974

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=100.00  E-value=1.6e-45  Score=302.46  Aligned_cols=203  Identities=22%  Similarity=0.277  Sum_probs=163.3

Q ss_pred             CcccccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEc
Q psy8250           1 METFHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVP   76 (212)
Q Consensus         1 ~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~   76 (212)
                      ++++++.|+ ++.+++++||+|++|++++|+||||||||||+++|+|+.+| ++|+|.++|.++..   ..+++.++|++
T Consensus         3 ~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~-~~G~v~~~g~~~~~~~~~~~~~~i~~~~   81 (236)
T cd03253           3 FENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDV-SSGSILIDGQDIREVTLDSLRRAIGVVP   81 (236)
T ss_pred             EEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC-CCCEEEECCEEhhhCCHHHHHhhEEEEC
Confidence            468899995 56799999999999999999999999999999999999988 69999999998743   23456799999


Q ss_pred             CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHH-----HHHHHHHHHc--CCccccCCCCCCCChHHHHHHHHHHHHhhC
Q psy8250          77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERA-----RTVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQTIIV  149 (212)
Q Consensus        77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LSgGqrqRv~lA~al~~~  149 (212)
                      |++.+++ .|+.||+.+....     .......     ..+.+.++.+  ++....++++.+||+|||||++|||||+.+
T Consensus        82 q~~~~~~-~tv~~nl~~~~~~-----~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~  155 (236)
T cd03253          82 QDTVLFN-DTIGYNIRYGRPD-----ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKN  155 (236)
T ss_pred             CCChhhc-chHHHHHhhcCCC-----CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence            9998875 6999999874321     1111111     1223344444  555566778899999999999999999999


Q ss_pred             CCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhh
Q psy8250         150 QSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       150 p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~  210 (212)
                      |+++||||||+ ||+.++..+.++|.++++..    .+|+.+.+..++  .+|++|+++..|+++++.
T Consensus       156 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~  223 (236)
T cd03253         156 PPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELL  223 (236)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence            99999999999 99999999999999987521    269998876543  368899999999887764

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=100.00  E-value=4.6e-45  Score=317.66  Aligned_cols=204  Identities=21%  Similarity=0.257  Sum_probs=181.7

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc----cccceEEEEc
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN----LMVKVSGFVP   76 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~----~~~~~i~~v~   76 (212)
                      |++++|.|++..++++|||+|++||++||+|+||||||||+++|.|+++| ++|+|+++|+++.-.    ..+.-||+|+
T Consensus         7 ~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P-~~GeI~v~G~~v~~~sP~dA~~~GIGMVh   85 (501)
T COG3845           7 MRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQP-DSGEIRVDGKEVRIKSPRDAIRLGIGMVH   85 (501)
T ss_pred             EeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccC-CcceEEECCEEeccCCHHHHHHcCCcEEe
Confidence            57899999999999999999999999999999999999999999999999 699999999998432    3455699999


Q ss_pred             CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250          77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ  156 (212)
Q Consensus        77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD  156 (212)
                      |++.+++.+||.||+.++...............+++.++.+++|+.-..++++.+||-||||||.|-+||.++|++||||
T Consensus        86 QHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILD  165 (501)
T COG3845          86 QHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILD  165 (501)
T ss_pred             eccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEc
Confidence            99999999999999998765322223456778889999999999998899999999999999999999999999999999


Q ss_pred             CCCC-CChhhHHHHHHHHHHHHhhcC-----cchHHHHHHHH---HHHHhcCeeecCC
Q psy8250         157 HDLT-VDTLTVHEHMTLMARLKMDRN-----LHHVERARTVD---ALLKELGLLKCRP  205 (212)
Q Consensus       157 EPt~-lD~~~~~~~~~~l~~l~~~~~-----~h~~~~~~~~~---~~l~~g~~~~~~~  205 (212)
                      |||+ |-|....++++.++++++++.     ||-++++..++   .+|++|+++...+
T Consensus       166 EPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~  223 (501)
T COG3845         166 EPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD  223 (501)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence            9999 999999999999999998863     79999998753   3899999765554

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=100.00  E-value=8.8e-45  Score=327.67  Aligned_cols=209  Identities=17%  Similarity=0.209  Sum_probs=171.7

Q ss_pred             Cccccccc---CCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc----cccceEE
Q psy8250           1 METFHPLF---GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN----LMVKVSG   73 (212)
Q Consensus         1 ~~~l~~~~---~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~----~~~~~i~   73 (212)
                      ++++++.|   +++.+++++||+|.+|++++|+||||||||||+|+|+|+++|+++|+|+++|+++...    ..++.++
T Consensus       260 ~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~  339 (500)
T TIGR02633       260 ARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIA  339 (500)
T ss_pred             EeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCE
Confidence            36888888   3467999999999999999999999999999999999999852599999999987431    2356799


Q ss_pred             EEcCCC---CCCCCCCHHHHHHHHHh--hhcccCCCHHHHHHHHHHHHHHcCCcc-ccCCCCCCCChHHHHHHHHHHHHh
Q psy8250          74 FVPQHD---LTVDTLTVHEHMTLMAR--LKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQTI  147 (212)
Q Consensus        74 ~v~Q~~---~~~~~ltv~e~l~~~~~--~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqrqRv~lA~al~  147 (212)
                      |++|++   .+++.+|+.+|+.+...  ...............+.++++.+++.. ..++++.+||||||||++|||||+
T Consensus       340 ~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~  419 (500)
T TIGR02633       340 MVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLL  419 (500)
T ss_pred             EcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHh
Confidence            999996   57889999999987532  110001122334567889999999964 679999999999999999999999


Q ss_pred             hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHHH---HHHHhcCeeecCCchhh
Q psy8250         148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTVD---ALLKELGLLKCRPADEL  209 (212)
Q Consensus       148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~~---~~l~~g~~~~~~~~~~~  209 (212)
                      .+|++|||||||+ ||+.++..++++|++++.+.     .+||++++...+   .+|++|++++.++.+++
T Consensus       420 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~  490 (500)
T TIGR02633       420 TNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHAL  490 (500)
T ss_pred             hCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccC
Confidence            9999999999999 99999999999999997654     379999887643   36789999887765543

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=9.5e-45  Score=361.26  Aligned_cols=207  Identities=19%  Similarity=0.272  Sum_probs=182.8

Q ss_pred             CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc--ccccceEEEEc
Q psy8250           1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK--NLMVKVSGFVP   76 (212)
Q Consensus         1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~--~~~~~~i~~v~   76 (212)
                      +++++|.|++  +.+++||||+|++||++||+||||||||||+|+|+|++.| ++|+|+++|+++..  ...++.+||+|
T Consensus      1940 v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~p-tsG~I~i~G~~i~~~~~~~r~~IGy~p 2018 (2272)
T TIGR01257      1940 LNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTV-TSGDATVAGKSILTNISDVHQNMGYCP 2018 (2272)
T ss_pred             EEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCC-CccEEEECCEECcchHHHHhhhEEEEe
Confidence            4689999985  5799999999999999999999999999999999999999 69999999999853  23456799999


Q ss_pred             CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250          77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ  156 (212)
Q Consensus        77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD  156 (212)
                      |++.+++.+|++|++.+.+.++.   .+.++.++.++++++.+++.+..++++++||||||||++||+||+.+|+++|||
T Consensus      2019 Q~~~L~~~LTv~E~L~l~a~l~g---~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLD 2095 (2272)
T TIGR01257      2019 QFDAIDDLLTGREHLYLYARLRG---VPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLD 2095 (2272)
T ss_pred             ccccCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence            99999999999999998776542   334445567889999999999999999999999999999999999999999999


Q ss_pred             CCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHHH---HHHHhcCeeecCCchhhhc
Q psy8250         157 HDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTVD---ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       157 EPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~~  211 (212)
                      |||+ ||+.+++.++++|+++++++     +||+++++...+   .+|++|++++.|++++++.
T Consensus      2096 EPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~ 2159 (2272)
T TIGR01257      2096 EPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKS 2159 (2272)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence            9999 99999999999999987653     379999987643   4788999999999998853

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>KOG0058|consensus

Probab=100.00  E-value=1.4e-45  Score=332.86  Aligned_cols=208  Identities=19%  Similarity=0.313  Sum_probs=172.4

Q ss_pred             cccccccCC---cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250           2 ETFHPLFGD---TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV   75 (212)
Q Consensus         2 ~~l~~~~~~---~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v   75 (212)
                      +|+++.|..   .++|+|+||+|+|||++|||||||+||||+.++|..++.| ++|+|.+||.|+..   ..++++||+|
T Consensus       469 ~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~P-tsG~IllDG~~i~~~~~~~lr~~Ig~V  547 (716)
T KOG0058|consen  469 EDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDP-TSGRILLDGVPISDINHKYLRRKIGLV  547 (716)
T ss_pred             EEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCC-CCCeEEECCeehhhcCHHHHHHHeeee
Confidence            688999964   4599999999999999999999999999999999999999 69999999999854   3578899999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHc--CCccccCCCCCCCChHHHHHHHHHHHHhhCCCeE
Q psy8250          76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGF  153 (212)
Q Consensus        76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~ll  153 (212)
                      .|+|.+|.. |+.|||.++........+........+.+++..+  |.+.....+..+||||||||++|||||+++|.+|
T Consensus       548 ~QEPvLFs~-sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VL  626 (716)
T KOG0058|consen  548 GQEPVLFSG-SIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVL  626 (716)
T ss_pred             eccceeecc-cHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEE
Confidence            999999877 9999999976521101111122233455566655  4455556667789999999999999999999999


Q ss_pred             EecCCCC-CChhhHHHHHHHHHHHHhhcC----cchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250         154 VPQHDLT-VDTLTVHEHMTLMARLKMDRN----LHHVERARTVD--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       154 ilDEPt~-lD~~~~~~~~~~l~~l~~~~~----~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      ||||.|| ||..+...+.+.|.++.++++    .|.++.++..+  .++++|+++..|+.+|+-.
T Consensus       627 ILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~  691 (716)
T KOG0058|consen  627 ILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLS  691 (716)
T ss_pred             EEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhh
Confidence            9999999 999999999999998876654    49999988765  5899999999999888754

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=100.00  E-value=2.3e-44  Score=298.73  Aligned_cols=190  Identities=24%  Similarity=0.296  Sum_probs=160.6

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL   80 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~   80 (212)
                      ++++++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.        ..++|+||++.
T Consensus         7 ~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p-~~G~i~~~~~--------~~i~~v~q~~~   77 (251)
T PRK09544          7 LENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAP-DEGVIKRNGK--------LRIGYVPQKLY   77 (251)
T ss_pred             EeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCc--------cCEEEeccccc
Confidence            46899999888899999999999999999999999999999999999998 6999999872        35899999987


Q ss_pred             CCCCC--CHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250          81 TVDTL--TVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD  158 (212)
Q Consensus        81 ~~~~l--tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP  158 (212)
                      +++.+  |+.+++.+.      ...    ....+.++++.+|+.+..++++.+||||||||++|||||+.+|+++|||||
T Consensus        78 ~~~~l~~~~~~~~~~~------~~~----~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEP  147 (251)
T PRK09544         78 LDTTLPLTVNRFLRLR------PGT----KKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEP  147 (251)
T ss_pred             cccccChhHHHHHhcc------ccc----cHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            76653  677665431      111    124567899999999889999999999999999999999999999999999


Q ss_pred             CC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         159 LT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       159 t~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      |+ ||+.++..++++|++++.+ .     .+|+.+.+... +  .+| +++++..|+++++.
T Consensus       148 t~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l-~~~i~~~g~~~~~~  208 (251)
T PRK09544        148 TQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCL-NHHICCSGTPEVVS  208 (251)
T ss_pred             CcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE-CCceEeeCCHHHHh
Confidence            99 9999999999999998764 2     37999988664 3  356 45788999888764

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=100.00  E-value=5.7e-45  Score=305.82  Aligned_cols=198  Identities=17%  Similarity=0.273  Sum_probs=168.5

Q ss_pred             Cccccccc--CCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250           1 METFHPLF--GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV   75 (212)
Q Consensus         1 ~~~l~~~~--~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v   75 (212)
                      ++++++.|  ++..+|+|+||+|++||+++|+||||||||||+++|+|+++  .+|+|+++|.++..   ..+++.++|+
T Consensus         5 ~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~--~~G~I~i~g~~i~~~~~~~lr~~i~~v   82 (275)
T cd03289           5 VKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN--TEGDIQIDGVSWNSVPLQKWRKAFGVI   82 (275)
T ss_pred             EEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC--CCcEEEECCEEhhhCCHHHHhhhEEEE
Confidence            47899999  45679999999999999999999999999999999999985  48999999998853   2356789999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCC-----------CChHHHHHHHHHH
Q psy8250          76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV-----------LSGGERKRVALAV  144 (212)
Q Consensus        76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----------LSgGqrqRv~lA~  144 (212)
                      ||++.+|+. |+++|+.....      ..    .+.+.++++.+|+.+..++++..           ||+|||||++|||
T Consensus        83 ~q~~~lf~~-tv~~nl~~~~~------~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaR  151 (275)
T cd03289          83 PQKVFIFSG-TFRKNLDPYGK------WS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLAR  151 (275)
T ss_pred             CCCcccchh-hHHHHhhhccC------CC----HHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHH
Confidence            999999875 99999963211      11    23567888999998888887776           9999999999999


Q ss_pred             HHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250         145 QTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       145 al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      ||+.+|+++||||||+ ||+.+...+.+.|+++....    .+|+++.+..++  .+|++|+++..|+++++.+
T Consensus       152 all~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~  225 (275)
T cd03289         152 SVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLN  225 (275)
T ss_pred             HHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhh
Confidence            9999999999999999 99999999999999875432    279998876644  4789999999999998764

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=100.00  E-value=5.6e-45  Score=328.24  Aligned_cols=198  Identities=16%  Similarity=0.184  Sum_probs=167.7

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEcC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQ   77 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~Q   77 (212)
                      ++++++.|++..+|+++||+|++|++++|+||||||||||+|+|+|+++| ++|+|.++|.++..   ...++.++|++|
T Consensus         6 ~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p-~~G~i~~~~~~~~~~~~~~~~~~i~~~~q   84 (490)
T PRK10938          6 ISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPL-LSGERQSQFSHITRLSFEQLQKLVSDEWQ   84 (490)
T ss_pred             EEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC-CCceEEECCcccccCCHHHHHHHhceecc
Confidence            46899999888899999999999999999999999999999999999998 69999999977632   123456899999


Q ss_pred             CCCC--C------CCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhC
Q psy8250          78 HDLT--V------DTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIV  149 (212)
Q Consensus        78 ~~~~--~------~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~  149 (212)
                      ++..  +      ..+|+.+++.+.           .....++.++++.+|+.+..++++.+||||||||++|||||+.+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~  153 (490)
T PRK10938         85 RNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSE  153 (490)
T ss_pred             CcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence            8643  1      145777766431           12345678999999999889999999999999999999999999


Q ss_pred             CCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHHH---HHHHhcCeeecCCchhhh
Q psy8250         150 QSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTVD---ALLKELGLLKCRPADELN  210 (212)
Q Consensus       150 p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~  210 (212)
                      |++|||||||+ ||+.+++.++++|+++++++     .+|+++.+...+   .+|++|+++..|+++++.
T Consensus       154 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~  223 (490)
T PRK10938        154 PDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEIL  223 (490)
T ss_pred             CCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHh
Confidence            99999999999 99999999999999997653     379999887643   478899999999988764

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.6e-44  Score=326.75  Aligned_cols=203  Identities=20%  Similarity=0.258  Sum_probs=167.3

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc----cccceEEEEc
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN----LMVKVSGFVP   76 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~----~~~~~i~~v~   76 (212)
                      ++++++.|+  .+|+|+||+|++|++++|+||||||||||+|+|+|+++| ++|+|+++|+++...    ..++.++|+|
T Consensus       268 ~~~l~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-~~G~I~~~g~~~~~~~~~~~~~~~i~~v~  344 (510)
T PRK09700        268 VRNVTSRDR--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKR-AGGEIRLNGKDISPRSPLDAVKKGMAYIT  344 (510)
T ss_pred             EeCccccCC--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC-CCCeEEECCEECCCCCHHHHHHCCcEEcc
Confidence            357887764  489999999999999999999999999999999999998 699999999987431    2345699999


Q ss_pred             CC---CCCCCCCCHHHHHHHHHhhhc--cc---C-CCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHHH
Q psy8250          77 QH---DLTVDTLTVHEHMTLMARLKM--DR---N-LHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQT  146 (212)
Q Consensus        77 Q~---~~~~~~ltv~e~l~~~~~~~~--~~---~-~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~al  146 (212)
                      |+   +.+++.+|++||+.+....+.  ..   . .........+.++++.+++. +..++++.+|||||||||+|||||
T Consensus       345 q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral  424 (510)
T PRK09700        345 ESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWL  424 (510)
T ss_pred             CccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHH
Confidence            98   468889999999987532110  00   0 11223345678999999997 778999999999999999999999


Q ss_pred             hhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCc
Q psy8250         147 IIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPA  206 (212)
Q Consensus       147 ~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~  206 (212)
                      +.+|++|||||||+ ||+.++..++++|++++.++     .+||++.+... +  .+|++|+++..++.
T Consensus       425 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~  493 (510)
T PRK09700        425 CCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTN  493 (510)
T ss_pred             hcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecC
Confidence            99999999999999 99999999999999987653     27999988764 3  46889999887755

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=100.00  E-value=3e-44  Score=296.97  Aligned_cols=209  Identities=17%  Similarity=0.180  Sum_probs=167.0

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCC--CCCCceEEEECCEeCCcc---c-ccceEEE
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRI--QGDVDGQILLNGLEVEKN---L-MVKVSGF   74 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~--~p~~~G~I~~~g~~~~~~---~-~~~~i~~   74 (212)
                      ++++++.|+++.+++|+||+|++|++++|+||||||||||+++|+|+.  +| ++|+|.++|.++...   . .++.++|
T Consensus         4 ~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~-~~G~i~~~g~~~~~~~~~~~~~~~i~~   82 (248)
T PRK09580          4 IKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEV-TGGTVEFKGKDLLELSPEDRAGEGIFM   82 (248)
T ss_pred             EEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCC-CceEEEECCCccccCCHHHHhhcceEE
Confidence            478999998888999999999999999999999999999999999995  57 699999999877432   1 2346899


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHh-hhcccC---CCHHHHHHHHHHHHHHcCCc-cccCCCCC-CCChHHHHHHHHHHHHhh
Q psy8250          75 VPQHDLTVDTLTVHEHMTLMAR-LKMDRN---LHHVERARTVDALLKELGLL-KCKNSVLN-VLSGGERKRVALAVQTII  148 (212)
Q Consensus        75 v~Q~~~~~~~ltv~e~l~~~~~-~~~~~~---~~~~~~~~~~~~~l~~~gl~-~~~~~~~~-~LSgGqrqRv~lA~al~~  148 (212)
                      ++|++.+++.++..+++.+... ......   .........+.++++.+++. ...++.+. +||||||||++|||||+.
T Consensus        83 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~  162 (248)
T PRK09580         83 AFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVL  162 (248)
T ss_pred             EecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHc
Confidence            9999988887777666543221 110000   11122345677899999995 45667775 799999999999999999


Q ss_pred             CCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH--H--HHHHhcCeeecCCchhhh
Q psy8250         149 VQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV--D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       149 ~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~--~--~~l~~g~~~~~~~~~~~~  210 (212)
                      +|++|||||||+ ||+.++..+.++|+++++..     .+|+.+.+...  +  .+|++|+++..|+++.++
T Consensus       163 ~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~  234 (248)
T PRK09580        163 EPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVK  234 (248)
T ss_pred             CCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHHH
Confidence            999999999999 99999999999999987643     27999887653  3  367899999999887553

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=100.00  E-value=2e-45  Score=342.89  Aligned_cols=199  Identities=22%  Similarity=0.256  Sum_probs=166.1

Q ss_pred             CcccccccC--CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250           1 METFHPLFG--DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV   75 (212)
Q Consensus         1 ~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v   75 (212)
                      +++++++|+  ++.+|+|+||+|++||.+||+||||||||||+|+|+|+++| ++|+|.+||.++..   ..+++.+|||
T Consensus       454 ~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p-~~G~I~idg~~i~~~~~~~lr~~i~~v  532 (686)
T TIGR03797       454 VDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETP-ESGSVFYDGQDLAGLDVQAVRRQLGVV  532 (686)
T ss_pred             EEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCEEEECCEEcCcCCHHHHHhccEEE
Confidence            368899995  35799999999999999999999999999999999999999 69999999999854   3567889999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccc-----------cCCCCCCCChHHHHHHHHHH
Q psy8250          76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKC-----------KNSVLNVLSGGERKRVALAV  144 (212)
Q Consensus        76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGqrqRv~lA~  144 (212)
                      +|++.+|+. |++||+.++..      .    ..+.+.++++..++.+.           .......||||||||++|||
T Consensus       533 ~Q~~~lf~g-TI~eNi~~~~~------~----~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialAR  601 (686)
T TIGR03797       533 LQNGRLMSG-SIFENIAGGAP------L----TLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIAR  601 (686)
T ss_pred             ccCCccCcc-cHHHHHhcCCC------C----CHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHH
Confidence            999999876 99999987522      1    12345566666665432           33344679999999999999


Q ss_pred             HHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc--CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250         145 QTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR--NLHHVERARTVD--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       145 al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~--~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      ||+++|+++||||||+ ||+.+.+++.+.|+++....  .+|+++.+..++  .+|++|+++++|+.+++.+
T Consensus       602 All~~p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~  673 (686)
T TIGR03797       602 ALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMA  673 (686)
T ss_pred             HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence            9999999999999999 99999999999998873221  379998887665  4788999999999998753

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.6e-44  Score=299.66  Aligned_cols=206  Identities=19%  Similarity=0.263  Sum_probs=171.0

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCC----CceEEEECCEeCCc-------cccc
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD----VDGQILLNGLEVEK-------NLMV   69 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~----~~G~I~~~g~~~~~-------~~~~   69 (212)
                      ++++++.|+++.+|+|+||+|++||+++|+||||||||||+++|+|+..|.    ++|+|.++|.++..       ..++
T Consensus        19 ~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~   98 (265)
T PRK14252         19 VNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVR   98 (265)
T ss_pred             EEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHh
Confidence            368999998888999999999999999999999999999999999998741    48999999977631       1245


Q ss_pred             ceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCC-HHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHH
Q psy8250          70 KVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLH-HVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAV  144 (212)
Q Consensus        70 ~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~  144 (212)
                      +.++|++|++.+++. |++||+.+......   .. .....+.+.++++.+++.    +..++.+.+||+||+||++|||
T Consensus        99 ~~i~~~~q~~~~~~~-tv~eni~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar  174 (265)
T PRK14252         99 MRISMVFQKPNPFPK-SIFENVAYGLRIRG---VKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIAR  174 (265)
T ss_pred             ccEEEEccCCcCCcc-hHHHHHHhHHHHcC---CChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHH
Confidence            679999999988886 99999987643221   11 122345677888888773    4567889999999999999999


Q ss_pred             HHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         145 QTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       145 al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      ||+.+|+++||||||+ ||+.++..+.++|++++...    .+|+.+.+... +  .+|++|+++..|+++++.
T Consensus       175 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  248 (265)
T PRK14252        175 ALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIF  248 (265)
T ss_pred             HHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            9999999999999999 99999999999999987542    37999988654 3  478899999999988874

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=100.00  E-value=2.6e-45  Score=299.60  Aligned_cols=197  Identities=19%  Similarity=0.247  Sum_probs=157.3

Q ss_pred             CcccccccCC---cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEE
Q psy8250           1 METFHPLFGD---TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGF   74 (212)
Q Consensus         1 ~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~   74 (212)
                      ++++++.|++   ..+|+++||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++..   ...++.++|
T Consensus        14 ~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~   92 (226)
T cd03248          14 FQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQP-QGGQVLLDGKPISQYEHKYLHSKVSL   92 (226)
T ss_pred             EEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC-CCcEEEECCCchHHcCHHHHHhhEEE
Confidence            3688999964   3699999999999999999999999999999999999988 69999999987743   224567999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHc--CCccccCCCCCCCChHHHHHHHHHHHHhhCCCe
Q psy8250          75 VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQTIIVQSG  152 (212)
Q Consensus        75 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~l  152 (212)
                      ++|++.+++ .|++||+.+..................+.++++.+  |+.+..++++.+||||||||++|||||+.+|++
T Consensus        93 ~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~l  171 (226)
T cd03248          93 VGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQV  171 (226)
T ss_pred             EecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence            999998776 59999998643211000000111122356788888  888888999999999999999999999999999


Q ss_pred             EEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcC
Q psy8250         153 FVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELG  199 (212)
Q Consensus       153 lilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~  199 (212)
                      +||||||+ ||+.++..+.++|++++...    .+|+.+.+..++  .+|++|+
T Consensus       172 lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~  225 (226)
T cd03248         172 LILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGR  225 (226)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCc
Confidence            99999999 99999999999999987532    279998875433  2455554

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=100.00  E-value=4.4e-44  Score=288.10  Aligned_cols=177  Identities=24%  Similarity=0.347  Sum_probs=148.9

Q ss_pred             CcccccccC----CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCC---CCCceEEEECCEeCCcc--cccce
Q psy8250           1 METFHPLFG----DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ---GDVDGQILLNGLEVEKN--LMVKV   71 (212)
Q Consensus         1 ~~~l~~~~~----~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~---p~~~G~I~~~g~~~~~~--~~~~~   71 (212)
                      ++++++.|+    ++.+|+++||++++|++++|+||||||||||+++|+|+++   | ++|+|.++|.++...  ..++.
T Consensus         6 ~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~-~~G~i~i~g~~~~~~~~~~~~~   84 (202)
T cd03233           6 WRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVS-VEGDIHYNGIPYKEFAEKYPGE   84 (202)
T ss_pred             EEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCC-cceEEEECCEECccchhhhcce
Confidence            368899995    4579999999999999999999999999999999999998   6 699999999987542  34567


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCC
Q psy8250          72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQS  151 (212)
Q Consensus        72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~  151 (212)
                      ++|++|++.+++.+|++||+.+.....                          .++++..||+||+||++|||||+.+|+
T Consensus        85 i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~~~~LS~Ge~qrl~laral~~~p~  138 (202)
T cd03233          85 IIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEFVRGISGGERKRVSIAEALVSRAS  138 (202)
T ss_pred             EEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccchhhCCHHHHHHHHHHHHHhhCCC
Confidence            999999999999999999998643210                          567788999999999999999999999


Q ss_pred             eEEecCCCC-CChhhHHHHHHHHHHHHhh-cC-----c-chHHHHHHH-H--HHHHhcCeeecC
Q psy8250         152 GFVPQHDLT-VDTLTVHEHMTLMARLKMD-RN-----L-HHVERARTV-D--ALLKELGLLKCR  204 (212)
Q Consensus       152 llilDEPt~-lD~~~~~~~~~~l~~l~~~-~~-----~-h~~~~~~~~-~--~~l~~g~~~~~~  204 (212)
                      ++||||||+ ||+.+++.++++|++++++ ..     + |+.+.+... +  .+|++|+++..|
T Consensus       139 llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g  202 (202)
T cd03233         139 VLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG  202 (202)
T ss_pred             EEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence            999999999 9999999999999999764 21     3 445666543 2  467888876543

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=2.5e-44  Score=358.25  Aligned_cols=207  Identities=25%  Similarity=0.368  Sum_probs=182.1

Q ss_pred             CcccccccC--CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc--cccceEEEEc
Q psy8250           1 METFHPLFG--DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN--LMVKVSGFVP   76 (212)
Q Consensus         1 ~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~--~~~~~i~~v~   76 (212)
                      +++++|.|+  ++.+++|+||++.+||+++|+||||||||||+++|+|+++| ++|+|+++|.++...  ..++.+||+|
T Consensus       931 I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~P-tsG~I~i~G~dI~~~~~~~r~~IG~~p 1009 (2272)
T TIGR01257       931 VKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPP-TSGTVLVGGKDIETNLDAVRQSLGMCP 1009 (2272)
T ss_pred             EEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCC-CceEEEECCEECcchHHHHhhcEEEEe
Confidence            468899995  57799999999999999999999999999999999999999 699999999998532  3456799999


Q ss_pred             CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250          77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ  156 (212)
Q Consensus        77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD  156 (212)
                      |++.+++.+||+||+.++.+.+.   .+..+.++++.++++.+|+.+..++++.+|||||||||+|||||+.+|+++|||
T Consensus      1010 Q~~~L~~~LTV~E~L~f~~~lkg---~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLD 1086 (2272)
T TIGR01257      1010 QHNILFHHLTVAEHILFYAQLKG---RSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLD 1086 (2272)
T ss_pred             cCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence            99999999999999999776542   233445667899999999999999999999999999999999999999999999


Q ss_pred             CCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250         157 HDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       157 EPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      |||+ ||+.+++.++++|+++++..    .||+++++... +  .+|++|+++..|+++++.+
T Consensus      1087 EPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~ 1149 (2272)
T TIGR01257      1087 EPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKN 1149 (2272)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence            9999 99999999999999996432    37999998764 3  4788999999999988764

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=100.00  E-value=3.5e-45  Score=334.79  Aligned_cols=208  Identities=23%  Similarity=0.306  Sum_probs=172.2

Q ss_pred             cccccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEcC
Q psy8250           2 ETFHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQ   77 (212)
Q Consensus         2 ~~l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~Q   77 (212)
                      +++++.|+ ++.+|+|+||++++||.+||+||||||||||+++|++++.| ++|+|.+||.++..   ..+++.++||||
T Consensus       332 ~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~-~~G~I~idg~dI~~i~~~~lr~~I~~V~Q  410 (567)
T COG1132         332 ENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP-TSGEILIDGIDIRDISLDSLRKRIGIVSQ  410 (567)
T ss_pred             EEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC-CCCeEEECCEehhhcCHHHHHHhccEEcc
Confidence            68899998 67899999999999999999999999999999999999999 69999999999864   457889999999


Q ss_pred             CCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHc--CCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEe
Q psy8250          78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVP  155 (212)
Q Consensus        78 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llil  155 (212)
                      ++.+|. -|++||+.++..........+......+.++++.+  |++.........||||||||++||||++.+|+++||
T Consensus       411 d~~LF~-~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILIL  489 (567)
T COG1132         411 DPLLFS-GTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILIL  489 (567)
T ss_pred             cceeec-ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            999998 59999999864321100111112222345555665  566666666778999999999999999999999999


Q ss_pred             cCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250         156 QHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       156 DEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      ||||| +|+.+...+.+.+.++.+..    .+|.+..++.++  .++++|++++.|+++|+..
T Consensus       490 DEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~  552 (567)
T COG1132         490 DEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLA  552 (567)
T ss_pred             eccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence            99999 99999999999999877543    369998888765  4899999999999999854

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=100.00  E-value=9.4e-45  Score=295.22  Aligned_cols=193  Identities=18%  Similarity=0.222  Sum_probs=157.7

Q ss_pred             CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250           1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV   75 (212)
Q Consensus         1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v   75 (212)
                      ++++++.|++  +.+++|+||++++|++++|+||||||||||+++|+|+++| ++|+|+++|.++..   ..+++.++|+
T Consensus         5 ~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~   83 (221)
T cd03244           5 FKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVEL-SSGSILIDGVDISKIGLHDLRSRISII   83 (221)
T ss_pred             EEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCC-CCCEEEECCEEhHhCCHHHHhhhEEEE
Confidence            4688999964  4799999999999999999999999999999999999988 69999999998743   2345679999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccc-----------cCCCCCCCChHHHHHHHHHH
Q psy8250          76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKC-----------KNSVLNVLSGGERKRVALAV  144 (212)
Q Consensus        76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGqrqRv~lA~  144 (212)
                      ||++.+++ .|++||+.+...      ..    ...+.++++.+++.+.           .++++.+||+||+||++|||
T Consensus        84 ~q~~~l~~-~tv~enl~~~~~------~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~lar  152 (221)
T cd03244          84 PQDPVLFS-GTIRSNLDPFGE------YS----DEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLAR  152 (221)
T ss_pred             CCCCcccc-chHHHHhCcCCC------CC----HHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHH
Confidence            99998776 599999864311      11    1234455555555443           35688999999999999999


Q ss_pred             HHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCC
Q psy8250         145 QTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRP  205 (212)
Q Consensus       145 al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~  205 (212)
                      ||+.+|+++||||||+ ||+.++..++++|++++...    .+|+.+.+..++  .+|++|++++.|+
T Consensus       153 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~  220 (221)
T cd03244         153 ALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS  220 (221)
T ss_pred             HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence            9999999999999999 99999999999999986532    279998876543  3678999888775

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=2.8e-45  Score=286.19  Aligned_cols=210  Identities=22%  Similarity=0.324  Sum_probs=183.8

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECC-EeCCcc----cccceEEEE
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG-LEVEKN----LMVKVSGFV   75 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g-~~~~~~----~~~~~i~~v   75 (212)
                      +++++++|++..+++++||++.+||.-+|||||||||||+|.+|+|..+| +.|+++++| .+++..    ..+.-||.-
T Consensus         8 ~~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp-~~G~v~f~g~~dl~~~~e~~IAr~GIGRK   86 (249)
T COG4674           8 LDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRP-QEGEVLFDGDTDLTKLPEHRIARAGIGRK   86 (249)
T ss_pred             EeceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCC-CcceEEEcCchhhccCCHHHHHHhccCcc
Confidence            47899999999999999999999999999999999999999999999998 699999999 777542    234568999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHhhhcc-----cCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCC
Q psy8250          76 PQHDLTVDTLTVHEHMTLMARLKMD-----RNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQ  150 (212)
Q Consensus        76 ~Q~~~~~~~ltv~e~l~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p  150 (212)
                      ||.|..|.++||+||+.+.......     ......+.+.+++++|...||.+..++....||.|||||+.|++-++++|
T Consensus        87 FQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P  166 (249)
T COG4674          87 FQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDP  166 (249)
T ss_pred             ccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCC
Confidence            9999999999999999886542111     00123455678999999999999999999999999999999999999999


Q ss_pred             CeEEecCCCC-CChhhHHHHHHHHHHHHhhcC----cchHHHHHHHH---HHHHhcCeeecCCchhhhc
Q psy8250         151 SGFVPQHDLT-VDTLTVHEHMTLMARLKMDRN----LHHVERARTVD---ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       151 ~llilDEPt~-lD~~~~~~~~~~l~~l~~~~~----~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~~  211 (212)
                      ++|++|||++ +-.....+.-++|+.++..+.    .||+++++...   .+|++|.++++|+.|+++.
T Consensus       167 ~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~~  235 (249)
T COG4674         167 KLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQN  235 (249)
T ss_pred             cEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccHHHhhc
Confidence            9999999999 988889999999999998764    59999998754   3899999999999999864

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=100.00  E-value=6.7e-45  Score=334.37  Aligned_cols=198  Identities=18%  Similarity=0.197  Sum_probs=166.5

Q ss_pred             cccccccCC-cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEcC
Q psy8250           2 ETFHPLFGD-TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQ   77 (212)
Q Consensus         2 ~~l~~~~~~-~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~Q   77 (212)
                      +++++.|++ ..+|+|+||++++|+.++|+||||||||||+++|+|+++| ++|+|.+||.++..   ..++++++|+||
T Consensus       344 ~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p-~~G~I~idg~~i~~~~~~~l~~~i~~v~Q  422 (592)
T PRK10790        344 DNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPL-TEGEIRLDGRPLSSLSHSVLRQGVAMVQQ  422 (592)
T ss_pred             EEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC-CCceEEECCEEhhhCCHHHHHhheEEEcc
Confidence            678888864 5699999999999999999999999999999999999999 69999999998854   356788999999


Q ss_pred             CCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-----------ccCCCCCCCChHHHHHHHHHHHH
Q psy8250          78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-----------CKNSVLNVLSGGERKRVALAVQT  146 (212)
Q Consensus        78 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgGqrqRv~lA~al  146 (212)
                      ++.+|+. |+++|+.++..      .    .++++.++++.+|+.+           ........||||||||++|||||
T Consensus       423 ~~~lF~~-Ti~~NI~~~~~------~----~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaL  491 (592)
T PRK10790        423 DPVVLAD-TFLANVTLGRD------I----SEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVL  491 (592)
T ss_pred             CCccccc-hHHHHHHhCCC------C----CHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence            9999987 99999998531      1    1234555666666543           33344567999999999999999


Q ss_pred             hhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250         147 IIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       147 ~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      +.+|+++||||||+ ||+.+.+.+.+.|.++....    .+|+++....++  .+|++|++++.|+++++.+
T Consensus       492 l~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~  563 (592)
T PRK10790        492 VQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLA  563 (592)
T ss_pred             HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            99999999999999 99999999999999986543    379998877665  3688999999999998753

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=6.8e-44  Score=285.37  Aligned_cols=180  Identities=17%  Similarity=0.142  Sum_probs=153.6

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL   80 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~   80 (212)
                      ++++++.|+++.+++ +||++++|++++|+||||||||||+++|+|+.+| ++|+|+++|.++.... .+.++|++|++.
T Consensus         4 ~~~l~~~~~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~i~~~~-~~~~~~~~~~~~   80 (195)
T PRK13541          4 LHQLQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQP-SSGNIYYKNCNINNIA-KPYCTYIGHNLG   80 (195)
T ss_pred             EEEeeEEECCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEECCcccChhh-hhhEEeccCCcC
Confidence            478999998766665 9999999999999999999999999999999998 6999999999875422 345899999988


Q ss_pred             CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC
Q psy8250          81 TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT  160 (212)
Q Consensus        81 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~  160 (212)
                      +++.+|+.||+.+....+.        ..+.+.++++.+++.+..++++.+||+|||||++||||++.+|+++||||||+
T Consensus        81 ~~~~~tv~~~l~~~~~~~~--------~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~  152 (195)
T PRK13541         81 LKLEMTVFENLKFWSEIYN--------SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVET  152 (195)
T ss_pred             CCccCCHHHHHHHHHHhcc--------cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence            8888999999987543221        13456788999999888899999999999999999999999999999999999


Q ss_pred             -CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH
Q psy8250         161 -VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV  191 (212)
Q Consensus       161 -lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~  191 (212)
                       +|+.++..+.++|++..+..     .+|+.+.+...
T Consensus       153 ~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~  189 (195)
T PRK13541        153 NLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSA  189 (195)
T ss_pred             cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchh
Confidence             99999999999998765443     26998776553

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.5e-45  Score=322.72  Aligned_cols=199  Identities=25%  Similarity=0.313  Sum_probs=171.8

Q ss_pred             cccccccCCc-ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEcC
Q psy8250           2 ETFHPLFGDT-NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQ   77 (212)
Q Consensus         2 ~~l~~~~~~~-~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~Q   77 (212)
                      +++++.|++. ++++|+||++++|+.++|+|+||||||||+++|+|+.+| ++|+|.+||.+..+   ..++++++||+|
T Consensus       324 ~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~-~~G~I~vng~~l~~l~~~~~~k~i~~v~Q  402 (559)
T COG4988         324 ENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP-TQGEIRVNGIDLRDLSPEAWRKQISWVSQ  402 (559)
T ss_pred             cceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCC-CCceEEECCccccccCHHHHHhHeeeeCC
Confidence            5899999654 899999999999999999999999999999999999999 79999999988754   458899999999


Q ss_pred             CCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCC----------CCCCCChHHHHHHHHHHHHh
Q psy8250          78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNS----------VLNVLSGGERKRVALAVQTI  147 (212)
Q Consensus        78 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~----------~~~~LSgGqrqRv~lA~al~  147 (212)
                      +|.+|+. |++||+.++..-         ..++.+.+++++.|+.+..++          ....|||||+|||++||||+
T Consensus       403 ~p~lf~g-TireNi~l~~~~---------~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll  472 (559)
T COG4988         403 NPYLFAG-TIRENILLARPD---------ASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALL  472 (559)
T ss_pred             CCccccc-cHHHHhhccCCc---------CCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhc
Confidence            9999887 999999985321         123456667777766554333          33459999999999999999


Q ss_pred             hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhcC----cchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250         148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDRN----LHHVERARTVD--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~~----~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      .+++++|+||||+ ||.++.+.+.+.|.++.++..    ||+++.++..+  .+|++|++++.|.++++.+
T Consensus       473 ~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~  543 (559)
T COG4988         473 SPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSE  543 (559)
T ss_pred             CCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhh
Confidence            9999999999999 999999999999999988753    79999988765  5799999999999999864

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=100.00  E-value=3.8e-45  Score=342.16  Aligned_cols=200  Identities=20%  Similarity=0.237  Sum_probs=163.7

Q ss_pred             CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250           1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV   75 (212)
Q Consensus         1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v   75 (212)
                      +++++++|++  +.+|+|+||+|++|+.+||+||||||||||+++|+|+++| ++|+|.+||.++..   ..+++.++||
T Consensus       480 ~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p-~~G~I~idg~~i~~~~~~~lr~~i~~v  558 (710)
T TIGR03796       480 LRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQP-WSGEILFDGIPREEIPREVLANSVAMV  558 (710)
T ss_pred             EEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEECCEeHHHCCHHHHHhheeEE
Confidence            3688999964  5799999999999999999999999999999999999999 69999999999853   3568899999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCC-----------ccccCCCCCCCChHHHHHHHHHH
Q psy8250          76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGL-----------LKCKNSVLNVLSGGERKRVALAV  144 (212)
Q Consensus        76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LSgGqrqRv~lA~  144 (212)
                      ||++.+|+. |++||+.++..     ..+    .+.+.++++..++           +.........||||||||++|||
T Consensus       559 ~Q~~~lf~g-Ti~eNi~l~~~-----~~~----~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLAR  628 (710)
T TIGR03796       559 DQDIFLFEG-TVRDNLTLWDP-----TIP----DADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIAR  628 (710)
T ss_pred             ecCChhhhc-cHHHHhhCCCC-----CCC----HHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHH
Confidence            999998876 99999987421     111    2233444444443           44444556789999999999999


Q ss_pred             HHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh--cCcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250         145 QTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD--RNLHHVERARTVD--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       145 al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~--~~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      ||+++|+++||||||| ||+.+.+++++.|++....  -.+|+++.+..++  .+|++|+++++|+.+++.+
T Consensus       629 all~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~  700 (710)
T TIGR03796       629 ALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWA  700 (710)
T ss_pred             HHhhCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHH
Confidence            9999999999999999 9999999999999873111  1379998887765  4788999999999998853

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=100.00  E-value=6.9e-44  Score=303.82  Aligned_cols=198  Identities=21%  Similarity=0.300  Sum_probs=177.9

Q ss_pred             cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc------cccceEEEEcCCC--CCC
Q psy8250          11 TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN------LMVKVSGFVPQHD--LTV   82 (212)
Q Consensus        11 ~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~------~~~~~i~~v~Q~~--~~~   82 (212)
                      ..++++|||++.+|+.+||+|+||||||||-.+|.+++.+  +|+|.|+|++++..      ..++.+-.|||+|  .+.
T Consensus       300 ~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s--~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLs  377 (534)
T COG4172         300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS--QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLS  377 (534)
T ss_pred             eEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc--CceEEECCccccccChhhhhhhhhhceEEEeCCCCCCC
Confidence            4689999999999999999999999999999999998875  69999999999642      3567789999998  478


Q ss_pred             CCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-ccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-
Q psy8250          83 DTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-  160 (212)
Q Consensus        83 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-  160 (212)
                      |.+||.+-+..+...+. ...+.++..+++.++|+.+||++ ..+++|+++|||||||++||||++.+|++++|||||| 
T Consensus       378 PRmtV~qII~EGL~vh~-~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSA  456 (534)
T COG4172         378 PRMTVGQIIEEGLRVHE-PKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSA  456 (534)
T ss_pred             cccCHHHHhhhhhhhcC-CCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchH
Confidence            99999999999888764 34678899999999999999975 6899999999999999999999999999999999999 


Q ss_pred             CChhhHHHHHHHHHHHHhhcC------cchHHHHHHHH---HHHHhcCeeecCCchhhhc
Q psy8250         161 VDTLTVHEHMTLMARLKMDRN------LHHVERARTVD---ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       161 lD~~~~~~~~~~l~~l~~~~~------~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~~  211 (212)
                      ||...+.++.++|+.++++++      +||+..++..+   .+|++|++++.|+.+++-+
T Consensus       457 LD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~  516 (534)
T COG4172         457 LDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFA  516 (534)
T ss_pred             hhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHhc
Confidence            999999999999999998864      79999987753   4899999999999988743

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=100.00  E-value=6.5e-45  Score=333.74  Aligned_cols=201  Identities=16%  Similarity=0.225  Sum_probs=165.1

Q ss_pred             CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250           1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV   75 (212)
Q Consensus         1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v   75 (212)
                      ++++++.|++  +.+|+|+||+|++|+.++|+||||||||||+++|+|+++| ++|+|.++|.++..   ..+++.++|+
T Consensus       344 ~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p-~~G~I~i~g~~i~~~~~~~~~~~i~~v  422 (582)
T PRK11176        344 FRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDI-DEGEILLDGHDLRDYTLASLRNQVALV  422 (582)
T ss_pred             EEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCC-CCceEEECCEEhhhcCHHHHHhhceEE
Confidence            3688999964  5699999999999999999999999999999999999999 69999999999854   3467889999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCC-----------ccccCCCCCCCChHHHHHHHHHH
Q psy8250          76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGL-----------LKCKNSVLNVLSGGERKRVALAV  144 (212)
Q Consensus        76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LSgGqrqRv~lA~  144 (212)
                      ||++.+|+. |++||+.++..    ....    ++++.++++.+++           +........+||||||||++|||
T Consensus       423 ~Q~~~lf~~-Ti~~Ni~~~~~----~~~~----~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LAR  493 (582)
T PRK11176        423 SQNVHLFND-TIANNIAYART----EQYS----REQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIAR  493 (582)
T ss_pred             ccCceeecc-hHHHHHhcCCC----CCCC----HHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHH
Confidence            999998875 99999987421    0111    2334445555543           33333445679999999999999


Q ss_pred             HHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHHH--HHHhcCeeecCCchhhhc
Q psy8250         145 QTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVDA--LLKELGLLKCRPADELNR  211 (212)
Q Consensus       145 al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~~--~l~~g~~~~~~~~~~~~~  211 (212)
                      ||+++|+++||||||+ ||+.+...+++.|.++.+..    ++|+++.++.++.  +|++|++++.|+.+++.+
T Consensus       494 all~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~  567 (582)
T PRK11176        494 ALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLA  567 (582)
T ss_pred             HHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            9999999999999999 99999999999999986543    3799988776654  688999999999988753

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.8e-44  Score=295.02  Aligned_cols=195  Identities=23%  Similarity=0.298  Sum_probs=169.3

Q ss_pred             cccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc-------ccccceEEEEc
Q psy8250           4 FHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-------NLMVKVSGFVP   76 (212)
Q Consensus         4 l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~-------~~~~~~i~~v~   76 (212)
                      +.+.+|+.. + +++|+.+...++||-|+||||||||+|+|+|+..| +.|.|.+||..+..       ...++++||||
T Consensus         6 ~~~~lG~~~-l-~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rP-deG~I~lngr~L~Ds~k~i~lp~~~RriGYVF   82 (352)
T COG4148           6 FRQRLGNFA-L-DANFTLPARGITALFGPSGSGKTSLINMIAGLTRP-DEGRIELNGRVLVDAEKGIFLPPEKRRIGYVF   82 (352)
T ss_pred             hhhhcCceE-E-EEeccCCCCceEEEecCCCCChhhHHHHHhccCCc-cccEEEECCEEeecccCCcccChhhheeeeEe
Confidence            444555543 2 78899888789999999999999999999999999 69999999987632       23467899999


Q ss_pred             CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250          77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ  156 (212)
Q Consensus        77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD  156 (212)
                      |+..+||++||+.|+.|+....         .....+++...+|+.++++++|..|||||||||+|+|||+..|++|+||
T Consensus        83 QDARLFpH~tVrgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmD  153 (352)
T COG4148          83 QDARLFPHYTVRGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMD  153 (352)
T ss_pred             eccccccceEEecchhhhhccc---------chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeec
Confidence            9999999999999999976432         3446788899999999999999999999999999999999999999999


Q ss_pred             CCCC-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         157 HDLT-VDTLTVHEHMTLMARLKMDR------NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       157 EPt~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      ||.+ ||..-+.+++-.|.+++++.      ++|.++++... +  .+|.+|++.+.|+.+++-
T Consensus       154 EPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~  217 (352)
T COG4148         154 EPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVW  217 (352)
T ss_pred             CchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHh
Confidence            9999 99999999999999999874      37999888764 3  489999999999998873

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=100.00  E-value=9.5e-44  Score=279.56  Aligned_cols=159  Identities=27%  Similarity=0.442  Sum_probs=139.5

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc--ccccceEEEEcCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK--NLMVKVSGFVPQH   78 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~--~~~~~~i~~v~Q~   78 (212)
                      ++++++.|++..+|+++||++.+|++++|+||||||||||+++|+|+++| ++|+|.++|.++..  ..+++.++|+||+
T Consensus         3 ~~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~i~~~~q~   81 (173)
T cd03230           3 VRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKP-DSGEIKVLGKDIKKEPEEVKRRIGYLPEE   81 (173)
T ss_pred             EEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEEcccchHhhhccEEEEecC
Confidence            46889999887899999999999999999999999999999999999988 69999999998753  2345679999999


Q ss_pred             CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250          79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD  158 (212)
Q Consensus        79 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP  158 (212)
                      +.+++.+|+.||+.                                       |||||+||++|||||+.+|+++|||||
T Consensus        82 ~~~~~~~tv~~~~~---------------------------------------LS~G~~qrv~laral~~~p~illlDEP  122 (173)
T cd03230          82 PSLYENLTVRENLK---------------------------------------LSGGMKQRLALAQALLHDPELLILDEP  122 (173)
T ss_pred             CccccCCcHHHHhh---------------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            99998899998863                                       999999999999999999999999999


Q ss_pred             CC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcC
Q psy8250         159 LT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELG  199 (212)
Q Consensus       159 t~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~  199 (212)
                      |+ ||+.++..+.++|++++++.     .+|+.+.+... +  .+|++|+
T Consensus       123 t~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~  172 (173)
T cd03230         123 TSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGR  172 (173)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCC
Confidence            99 99999999999999997653     27998887653 2  2455554

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=100.00  E-value=9.6e-44  Score=284.45  Aligned_cols=170  Identities=35%  Similarity=0.529  Sum_probs=146.3

Q ss_pred             CcccccccCC------cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCC--CCCCceEEEECCEeCCcccccceE
Q psy8250           1 METFHPLFGD------TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRI--QGDVDGQILLNGLEVEKNLMVKVS   72 (212)
Q Consensus         1 ~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~--~p~~~G~I~~~g~~~~~~~~~~~i   72 (212)
                      ++++++.|++      +.+++++||++++|++++|+||||||||||+++|+|++  +| .+|+|.++|+++.....++.+
T Consensus         6 ~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~-~~G~i~~~g~~~~~~~~~~~i   84 (194)
T cd03213           6 FRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG-VSGEVLINGRPLDKRSFRKII   84 (194)
T ss_pred             EEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC-CceEEEECCEeCchHhhhheE
Confidence            4688999975      67999999999999999999999999999999999999  88 699999999988654456679


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCe
Q psy8250          73 GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSG  152 (212)
Q Consensus        73 ~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~l  152 (212)
                      +|++|++.+++.+|+.||+.+....               .                 +||+||+||++|||||+.+|++
T Consensus        85 ~~~~q~~~~~~~~t~~~~i~~~~~~---------------~-----------------~LS~G~~qrv~laral~~~p~i  132 (194)
T cd03213          85 GYVPQDDILHPTLTVRETLMFAAKL---------------R-----------------GLSGGERKRVSIALELVSNPSL  132 (194)
T ss_pred             EEccCcccCCCCCcHHHHHHHHHHh---------------c-----------------cCCHHHHHHHHHHHHHHcCCCE
Confidence            9999999999999999999764210               0                 8999999999999999999999


Q ss_pred             EEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHH-HHHHH-H--HHHHhcCeeec
Q psy8250         153 FVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVE-RARTV-D--ALLKELGLLKC  203 (212)
Q Consensus       153 lilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~-~~~~~-~--~~l~~g~~~~~  203 (212)
                      +||||||+ ||+.+++.+.++|++++.+.     .+|+.+ .+... +  .+|++|+++..
T Consensus       133 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~  193 (194)
T cd03213         133 LFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYF  193 (194)
T ss_pred             EEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEec
Confidence            99999999 99999999999999987643     269985 55443 2  46778887654

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=100.00  E-value=1.4e-44  Score=337.63  Aligned_cols=200  Identities=21%  Similarity=0.255  Sum_probs=165.9

Q ss_pred             CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250           1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV   75 (212)
Q Consensus         1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v   75 (212)
                      +++++++|++  ..+|+|+||+|++|+.++|+||||||||||+++|+|+++| ++|+|.+||.++..   ..+++.++||
T Consensus       466 ~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p-~~G~I~idg~~l~~~~~~~lr~~i~~v  544 (694)
T TIGR03375       466 FRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQP-TEGSVLLDGVDIRQIDPADLRRNIGYV  544 (694)
T ss_pred             EEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEEhhhCCHHHHHhccEEE
Confidence            3688999963  4699999999999999999999999999999999999999 69999999999854   3567889999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCC-----------ccccCCCCCCCChHHHHHHHHHH
Q psy8250          76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGL-----------LKCKNSVLNVLSGGERKRVALAV  144 (212)
Q Consensus        76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LSgGqrqRv~lA~  144 (212)
                      +|++.+|+. |++||+.++..     ..+    .+++.++++..++           +.........||||||||++|||
T Consensus       545 ~Q~~~lf~~-TI~eNi~~~~~-----~~~----~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalAR  614 (694)
T TIGR03375       545 PQDPRLFYG-TLRDNIALGAP-----YAD----DEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALAR  614 (694)
T ss_pred             CCChhhhhh-hHHHHHhCCCC-----CCC----HHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHH
Confidence            999998876 99999987522     111    2233444444443           34444556789999999999999


Q ss_pred             HHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250         145 QTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       145 al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      ||+.+|+++||||||+ ||+.+.+.+.+.|.++.+..    .+|+++.+..++  .+|++|++++.|+.+++-+
T Consensus       615 all~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~  688 (694)
T TIGR03375       615 ALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLE  688 (694)
T ss_pred             HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence            9999999999999999 99999999999999986543    379998887665  4788999999999998753

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=3.2e-44  Score=328.83  Aligned_cols=200  Identities=22%  Similarity=0.308  Sum_probs=169.7

Q ss_pred             CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250           1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV   75 (212)
Q Consensus         1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v   75 (212)
                      ++++++.|++  +.+|+|+||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++..   ..+++.++||
T Consensus       341 ~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p-~~G~I~i~g~~i~~~~~~~~r~~i~~v  419 (574)
T PRK11160        341 LNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDP-QQGEILLNGQPIADYSEAALRQAISVV  419 (574)
T ss_pred             EEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEEhhhCCHHHHHhheeEE
Confidence            3688999964  4699999999999999999999999999999999999999 69999999998854   3467889999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCC----------CCCCCChHHHHHHHHHHH
Q psy8250          76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNS----------VLNVLSGGERKRVALAVQ  145 (212)
Q Consensus        76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~----------~~~~LSgGqrqRv~lA~a  145 (212)
                      +|++.+|+. |++||+.++..     .    ...+.+.++++.+++.+..++          ....||||||||++||||
T Consensus       420 ~Q~~~lf~~-ti~~Ni~~~~~-----~----~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARa  489 (574)
T PRK11160        420 SQRVHLFSA-TLRDNLLLAAP-----N----ASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARA  489 (574)
T ss_pred             cccchhhcc-cHHHHhhcCCC-----c----cCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHH
Confidence            999998876 99999987531     1    123456778888888765443          456799999999999999


Q ss_pred             HhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250         146 TIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       146 l~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      |+++|+++||||||+ +|+.+.+.+.+.|.++.+..    .+|+++.+..++  .+|++|++++.|+.+++-+
T Consensus       490 ll~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~  562 (574)
T PRK11160        490 LLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLA  562 (574)
T ss_pred             HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHh
Confidence            999999999999999 99999999999999986543    279998887655  3688999999999988753

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=100.00  E-value=1.5e-44  Score=338.02  Aligned_cols=201  Identities=22%  Similarity=0.295  Sum_probs=164.3

Q ss_pred             CcccccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEc
Q psy8250           1 METFHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVP   76 (212)
Q Consensus         1 ~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~   76 (212)
                      +++++++|+ ++.+|+|+||+|++|+.+||+||||||||||+++|+|++.| ++|+|.+||.++..   ..+++.++||+
T Consensus       476 ~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p-~~G~I~idg~~i~~~~~~~lr~~i~~v~  554 (708)
T TIGR01193       476 INDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQA-RSGEILLNGFSLKDIDRHTLRQFINYLP  554 (708)
T ss_pred             EEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CCcEEEECCEEHHHcCHHHHHHheEEEe
Confidence            368899996 46799999999999999999999999999999999999999 69999999998743   45678899999


Q ss_pred             CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcC-----------CccccCCCCCCCChHHHHHHHHHHH
Q psy8250          77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELG-----------LLKCKNSVLNVLSGGERKRVALAVQ  145 (212)
Q Consensus        77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~LSgGqrqRv~lA~a  145 (212)
                      |++.+|+. |++||+.++...    ..+    .+.+.++++..+           ++.........||||||||++||||
T Consensus       555 Q~~~lf~g-TI~eNi~l~~~~----~~~----~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARa  625 (708)
T TIGR01193       555 QEPYIFSG-SILENLLLGAKE----NVS----QDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARA  625 (708)
T ss_pred             cCceehhH-HHHHHHhccCCC----CCC----HHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHH
Confidence            99999876 999999985211    111    122334444443           3344445567899999999999999


Q ss_pred             HhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc---CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250         146 TIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR---NLHHVERARTVD--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       146 l~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~---~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      |+++|++|||||||+ ||+.+.+.+.+.|.+++...   .+|+++.+..++  .+|++|+++..|+.+++-+
T Consensus       626 ll~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~  697 (708)
T TIGR01193       626 LLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLD  697 (708)
T ss_pred             HhhCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence            999999999999999 99999999999998863211   379998876655  4788999999999998743

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=100.00  E-value=2.2e-43  Score=318.68  Aligned_cols=197  Identities=19%  Similarity=0.269  Sum_probs=164.9

Q ss_pred             ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc----cccceEEEEcCCC---CCCCC
Q psy8250          12 NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN----LMVKVSGFVPQHD---LTVDT   84 (212)
Q Consensus        12 ~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~----~~~~~i~~v~Q~~---~~~~~   84 (212)
                      .+++++||+|.+|++++|+||||||||||+++|+|+++| ++|+|.++|+++...    ..++.++|+||++   .+++.
T Consensus       266 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p-~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~  344 (501)
T PRK10762        266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPR-TSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLG  344 (501)
T ss_pred             CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCC-CceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCC
Confidence            369999999999999999999999999999999999998 699999999987532    1345699999996   57888


Q ss_pred             CCHHHHHHHHHhhhccc---CCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC
Q psy8250          85 LTVHEHMTLMARLKMDR---NLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT  160 (212)
Q Consensus        85 ltv~e~l~~~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~  160 (212)
                      +|+.||+.+........   .....+..+.+.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||+
T Consensus       345 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~  424 (501)
T PRK10762        345 MSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTR  424 (501)
T ss_pred             CcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCC
Confidence            99999998743211000   012233455688999999995 67899999999999999999999999999999999999


Q ss_pred             -CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHHH---HHHHhcCeeecCCchhh
Q psy8250         161 -VDTLTVHEHMTLMARLKMDR-----NLHHVERARTVD---ALLKELGLLKCRPADEL  209 (212)
Q Consensus       161 -lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~~---~~l~~g~~~~~~~~~~~  209 (212)
                       ||+.+++.++++|++++.++     .+||++.+...+   .+|++|+++..++++++
T Consensus       425 ~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~  482 (501)
T PRK10762        425 GVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQA  482 (501)
T ss_pred             CCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccC
Confidence             99999999999999997653     379999887653   47889999998887766

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=100.00  E-value=2.6e-44  Score=299.27  Aligned_cols=208  Identities=17%  Similarity=0.251  Sum_probs=164.0

Q ss_pred             CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250           1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV   75 (212)
Q Consensus         1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v   75 (212)
                      ++++++.|++  ..+++++||+|++|++++|+||||||||||+++|+|+++| .+|+|+++|.++..   ...++.++|+
T Consensus        22 ~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~i~g~~i~~~~~~~~~~~i~~v  100 (257)
T cd03288          22 IHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDI-FDGKIVIDGIDISKLPLHTLRSRLSII  100 (257)
T ss_pred             EEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCC-CCCeEEECCEEhhhCCHHHHhhhEEEE
Confidence            4688899976  5799999999999999999999999999999999999988 69999999998753   2345679999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHc--CCccccCCCCCCCChHHHHHHHHHHHHhhCCCeE
Q psy8250          76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGF  153 (212)
Q Consensus        76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~ll  153 (212)
                      +|++.+++. |+++|+....... ............+.++++.+  +++...+..+.+||+||+||++|||||+.+|+++
T Consensus       101 ~q~~~l~~~-tv~~nl~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ll  178 (257)
T cd03288         101 LQDPILFSG-SIRFNLDPECKCT-DDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSIL  178 (257)
T ss_pred             CCCCccccc-HHHHhcCcCCCCC-HHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence            999988764 9999875321100 00000000111234455555  6666677788999999999999999999999999


Q ss_pred             EecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250         154 VPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       154 ilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      ||||||+ ||+.++..+++++.+++...    .+|+++.+..++  .+|++|+++..|+++++.+
T Consensus       179 llDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~  243 (257)
T cd03288         179 IMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLA  243 (257)
T ss_pred             EEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            9999999 99999999999999875432    279999886543  3688999999999887753

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=100.00  E-value=6.5e-44  Score=324.99  Aligned_cols=204  Identities=24%  Similarity=0.258  Sum_probs=167.9

Q ss_pred             CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250           1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV   75 (212)
Q Consensus         1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v   75 (212)
                      +++++++|++  +.+|+|+||++++|+.++|+||||||||||+++|+|+++| ++|+|.++|.++..   ..+++.++|+
T Consensus       319 ~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v  397 (544)
T TIGR01842       319 VENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPP-TSGSVRLDGADLKQWDRETFGKHIGYL  397 (544)
T ss_pred             EEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEehhhCCHHHHhhheEEe
Confidence            3688999953  5799999999999999999999999999999999999998 69999999998754   2457789999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHH-----HHHHHHHHHHHc--CCccccCCCCCCCChHHHHHHHHHHHHhh
Q psy8250          76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVE-----RARTVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQTII  148 (212)
Q Consensus        76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~--gl~~~~~~~~~~LSgGqrqRv~lA~al~~  148 (212)
                      ||++.+|+. |++||+.++..     ..+.++     ....+.++++.+  |++.........||||||||++|||||++
T Consensus       398 ~q~~~lf~~-ti~~Ni~~~~~-----~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~  471 (544)
T TIGR01842       398 PQDVELFPG-TVAENIARFGE-----NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYG  471 (544)
T ss_pred             cCCcccccc-cHHHHHhccCC-----CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhc
Confidence            999999876 99999985321     111111     112345566666  66666777788999999999999999999


Q ss_pred             CCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250         149 VQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTVD--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       149 ~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      +|+++||||||+ ||+.+..++.+.|.+++.+.     .+|+++.+..++  .+|++|++++.|+++++.+
T Consensus       472 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~  542 (544)
T TIGR01842       472 DPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA  542 (544)
T ss_pred             CCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence            999999999999 99999999999999986322     379998765554  4688999999999988754

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-43  Score=319.95  Aligned_cols=198  Identities=15%  Similarity=0.234  Sum_probs=165.3

Q ss_pred             ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc----cccceEEEEcCCC---CCCCC
Q psy8250          12 NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN----LMVKVSGFVPQHD---LTVDT   84 (212)
Q Consensus        12 ~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~----~~~~~i~~v~Q~~---~~~~~   84 (212)
                      .+++|+||+|++|+++||+||||||||||+|+|+|+++| ++|+|+++|+++...    ..++.++|+||++   .+++.
T Consensus       267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p-~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~  345 (501)
T PRK11288        267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRR-TAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPV  345 (501)
T ss_pred             CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcC-CCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCC
Confidence            489999999999999999999999999999999999988 699999999987421    2345789999986   48888


Q ss_pred             CCHHHHHHHHHhhhcc-cC--CCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC
Q psy8250          85 LTVHEHMTLMARLKMD-RN--LHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT  160 (212)
Q Consensus        85 ltv~e~l~~~~~~~~~-~~--~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~  160 (212)
                      +|+.||+.+....... ..  .......+.+.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||+
T Consensus       346 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~  425 (501)
T PRK11288        346 HSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTR  425 (501)
T ss_pred             CCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCC
Confidence            9999999874321100 00  11223345678999999994 67899999999999999999999999999999999999


Q ss_pred             -CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHHH---HHHHhcCeeecCCchhhh
Q psy8250         161 -VDTLTVHEHMTLMARLKMDR-----NLHHVERARTVD---ALLKELGLLKCRPADELN  210 (212)
Q Consensus       161 -lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~  210 (212)
                       ||+.+++.++++|.++++++     .+||++++..++   .+|++|++++.|+++++.
T Consensus       426 ~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~~  484 (501)
T PRK11288        426 GIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQAT  484 (501)
T ss_pred             CCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccCC
Confidence             99999999999999998754     379999987653   478899999999887753

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=100.00  E-value=1.9e-43  Score=279.02  Aligned_cols=152  Identities=29%  Similarity=0.435  Sum_probs=136.5

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc-----ccccceEEEE
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-----NLMVKVSGFV   75 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~-----~~~~~~i~~v   75 (212)
                      ++++++.|+++.+++++||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++..     ...++.++|+
T Consensus         3 ~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~i~~~   81 (178)
T cd03229           3 LKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP-DSGSILIDGEDLTDLEDELPPLRRRIGMV   81 (178)
T ss_pred             EEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEccccchhHHHHhhcEEEE
Confidence            36889999888899999999999999999999999999999999999988 69999999998743     2345679999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEe
Q psy8250          76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVP  155 (212)
Q Consensus        76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llil  155 (212)
                      +|++.+++.+|+.||+.+.                                     ||+|||||++|||||+.+|+++||
T Consensus        82 ~q~~~~~~~~t~~~~l~~~-------------------------------------lS~G~~qr~~la~al~~~p~llil  124 (178)
T cd03229          82 FQDFALFPHLTVLENIALG-------------------------------------LSGGQQQRVALARALAMDPDVLLL  124 (178)
T ss_pred             ecCCccCCCCCHHHheeec-------------------------------------CCHHHHHHHHHHHHHHCCCCEEEE
Confidence            9999988889999987642                                     999999999999999999999999


Q ss_pred             cCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHH
Q psy8250         156 QHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERART  190 (212)
Q Consensus       156 DEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~  190 (212)
                      ||||+ ||+.++..++++|++++++ .     .+|+.+.+..
T Consensus       125 DEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~  166 (178)
T cd03229         125 DEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAAR  166 (178)
T ss_pred             eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence            99999 9999999999999999875 2     2699988764

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=100.00  E-value=1.1e-43  Score=286.39  Aligned_cols=187  Identities=16%  Similarity=0.202  Sum_probs=153.0

Q ss_pred             CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250           1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV   75 (212)
Q Consensus         1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v   75 (212)
                      ++++++.|++  ..+++++||+|++|++++|+||||||||||+++|+|+++| .+|+|.++|.++..   ...++.++|+
T Consensus         9 ~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~v   87 (207)
T cd03369           9 VENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA-EEGKIEIDGIDISTIPLEDLRSSLTII   87 (207)
T ss_pred             EEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCC-CCCeEEECCEEhHHCCHHHHHhhEEEE
Confidence            3678999975  4799999999999999999999999999999999999998 69999999998743   2345679999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEe
Q psy8250          76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVP  155 (212)
Q Consensus        76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llil  155 (212)
                      ||++.+++ .|+++|+.+..      ....    ..+.++++       .++++.+|||||+||++|||||+.+|+++||
T Consensus        88 ~q~~~~~~-~tv~~~l~~~~------~~~~----~~~~~~l~-------~~~~~~~LS~G~~qrv~laral~~~p~llll  149 (207)
T cd03369          88 PQDPTLFS-GTIRSNLDPFD------EYSD----EEIYGALR-------VSEGGLNLSQGQRQLLCLARALLKRPRVLVL  149 (207)
T ss_pred             ecCCcccC-ccHHHHhcccC------CCCH----HHHHHHhh-------ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEE
Confidence            99998876 49999996521      1111    12333333       3577899999999999999999999999999


Q ss_pred             cCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCc
Q psy8250         156 QHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPA  206 (212)
Q Consensus       156 DEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~  206 (212)
                      ||||+ ||+.++..++++|+++....    .+|+.+.+...+  .+|++|+++..|++
T Consensus       150 DEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~  207 (207)
T cd03369         150 DEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP  207 (207)
T ss_pred             eCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence            99999 99999999999999985422    279998875543  46789998887764

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=100.00  E-value=5.6e-44  Score=328.07  Aligned_cols=199  Identities=20%  Similarity=0.276  Sum_probs=163.3

Q ss_pred             CcccccccCC-cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEc
Q psy8250           1 METFHPLFGD-TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVP   76 (212)
Q Consensus         1 ~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~   76 (212)
                      ++++++.|++ ..+|+|+||++++|++++|+||||||||||+++|+|+++| .+|+|.++|.++..   ..+++.++|+|
T Consensus       337 ~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p-~~G~I~i~g~~i~~~~~~~~r~~i~~v~  415 (588)
T PRK13657        337 FDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDP-QSGRILIDGTDIRTVTRASLRRNIAVVF  415 (588)
T ss_pred             EEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCC-CCCEEEECCEEhhhCCHHHHHhheEEEe
Confidence            3678899964 5699999999999999999999999999999999999999 69999999998854   34678899999


Q ss_pred             CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcC-----------CccccCCCCCCCChHHHHHHHHHHH
Q psy8250          77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELG-----------LLKCKNSVLNVLSGGERKRVALAVQ  145 (212)
Q Consensus        77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~LSgGqrqRv~lA~a  145 (212)
                      |++.+|+. |++||+.++..     ..+    ++.+.++++.++           ++.........||||||||++||||
T Consensus       416 Q~~~lf~~-Ti~~Ni~~~~~-----~~~----d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARa  485 (588)
T PRK13657        416 QDAGLFNR-SIEDNIRVGRP-----DAT----DEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARA  485 (588)
T ss_pred             cCcccccc-cHHHHHhcCCC-----CCC----HHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHH
Confidence            99998876 99999987521     111    122333444443           3434444556799999999999999


Q ss_pred             HhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHHH--HHHhcCeeecCCchhhh
Q psy8250         146 TIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVDA--LLKELGLLKCRPADELN  210 (212)
Q Consensus       146 l~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~~--~l~~g~~~~~~~~~~~~  210 (212)
                      |+.+|+++||||||+ ||+.+.+.+++.|.++....    .||+.+.++.++.  .|++|+++..|+.+++.
T Consensus       486 ll~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~  557 (588)
T PRK13657        486 LLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELV  557 (588)
T ss_pred             HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            999999999999999 99999999999998885433    3799988776654  67899999999988874

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=3.2e-44  Score=274.42  Aligned_cols=182  Identities=22%  Similarity=0.310  Sum_probs=159.7

Q ss_pred             ccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEcCCC
Q psy8250           3 TFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQHD   79 (212)
Q Consensus         3 ~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~Q~~   79 (212)
                      ++.+.-++..+|+++||.+.+||+++|.||||||||||+|+++.+.+| ++|.++|.|++++.   ..++..++|+.|.|
T Consensus         8 q~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp-~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~p   86 (223)
T COG4619           8 QVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISP-TSGTLLFEGEDVSTLKPEAYRQQVSYCAQTP   86 (223)
T ss_pred             HHHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCC-CCceEEEcCccccccChHHHHHHHHHHHcCc
Confidence            444455778899999999999999999999999999999999999999 69999999999964   35678899999999


Q ss_pred             CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-ccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250          80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD  158 (212)
Q Consensus        80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP  158 (212)
                      .+|++ ||++|+.|+...+..+     ...+.+..+++.+++.+ .+++++.+||||||||++|+|.|..-|+||+||||
T Consensus        87 aLfg~-tVeDNlifP~~~r~rr-----~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~  160 (223)
T COG4619          87 ALFGD-TVEDNLIFPWQIRNRR-----PDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEI  160 (223)
T ss_pred             ccccc-chhhccccchHHhccC-----CChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCc
Confidence            99987 9999999988776422     24566788999999965 68999999999999999999999999999999999


Q ss_pred             CC-CChhhHHHHHHHHHHHHhh------cCcchHHHHHHH
Q psy8250         159 LT-VDTLTVHEHMTLMARLKMD------RNLHHVERARTV  191 (212)
Q Consensus       159 t~-lD~~~~~~~~~~l~~l~~~------~~~h~~~~~~~~  191 (212)
                      || ||+.+++.+.++|.++..+      +.|||-..+..+
T Consensus       161 TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rh  200 (223)
T COG4619         161 TSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRH  200 (223)
T ss_pred             hhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhh
Confidence            99 9999999999999998643      258998876543

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=100.00  E-value=3.1e-44  Score=335.91  Aligned_cols=198  Identities=19%  Similarity=0.256  Sum_probs=160.6

Q ss_pred             CcccccccCC---cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEE
Q psy8250           1 METFHPLFGD---TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGF   74 (212)
Q Consensus         1 ~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~   74 (212)
                      +++++++|++   +.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+||+++..   ..+++.++|
T Consensus       481 ~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p-~~G~I~idg~~i~~~~~~~lr~~i~~  559 (711)
T TIGR00958       481 FQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQP-TGGQVLLDGVPLVQYDHHYLHRQVAL  559 (711)
T ss_pred             EEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCC-CCCEEEECCEEHHhcCHHHHHhhceE
Confidence            3688999964   4699999999999999999999999999999999999999 69999999999854   346788999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-----------cccCCCCCCCChHHHHHHHHH
Q psy8250          75 VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-----------KCKNSVLNVLSGGERKRVALA  143 (212)
Q Consensus        75 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LSgGqrqRv~lA  143 (212)
                      |+|+|.+|+. |++||+.++..     ..+    ++.+.++++..++.           ........+||||||||++||
T Consensus       560 v~Q~~~lF~g-TIreNI~~g~~-----~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalA  629 (711)
T TIGR00958       560 VGQEPVLFSG-SVRENIAYGLT-----DTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIA  629 (711)
T ss_pred             EecCcccccc-CHHHHHhcCCC-----CCC----HHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHH
Confidence            9999998875 99999987532     111    23344555555543           333444568999999999999


Q ss_pred             HHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250         144 VQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       144 ~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      |||+++|+++||||||+ ||+.+.+.+.+ .... ...    .+|+++.+..++  .+|++|++++.|+++++.+
T Consensus       630 RALl~~p~ILILDEpTSaLD~~te~~i~~-~~~~-~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~  702 (711)
T TIGR00958       630 RALVRKPRVLILDEATSALDAECEQLLQE-SRSR-ASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLME  702 (711)
T ss_pred             HHHhcCCCEEEEEccccccCHHHHHHHHH-hhcc-CCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHh
Confidence            99999999999999999 99999999888 3222 222    379998877665  4688999999999998854

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=100.00  E-value=6.4e-43  Score=322.36  Aligned_cols=202  Identities=33%  Similarity=0.502  Sum_probs=175.3

Q ss_pred             CCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCC--CceEEEECCEeCCcccccceEEEEcCCCCCCCCCC
Q psy8250           9 GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD--VDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLT   86 (212)
Q Consensus         9 ~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~--~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~lt   86 (212)
                      +++.+|+|+|+++++||+++|+|||||||||||++|+|..+|.  .+|+|.++|.+++...+++.+||++|++.+++.+|
T Consensus        36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT  115 (617)
T TIGR00955        36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT  115 (617)
T ss_pred             CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence            4577999999999999999999999999999999999988762  37999999999865556778999999999999999


Q ss_pred             HHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCC------CCChHHHHHHHHHHHHhhCCCeEEecCCCC
Q psy8250          87 VHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLN------VLSGGERKRVALAVQTIIVQSGFVPQHDLT  160 (212)
Q Consensus        87 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~------~LSgGqrqRv~lA~al~~~p~llilDEPt~  160 (212)
                      |+||+.|.+.++.......++...+++++++.+|+.+..++.++      .||||||||++|||||+.+|++++|||||+
T Consensus       116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts  195 (617)
T TIGR00955       116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS  195 (617)
T ss_pred             HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence            99999998876544444556667789999999999988888876      499999999999999999999999999999


Q ss_pred             -CChhhHHHHHHHHHHHHhhc-----CcchHH-HHHH-HH--HHHHhcCeeecCCchhhh
Q psy8250         161 -VDTLTVHEHMTLMARLKMDR-----NLHHVE-RART-VD--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       161 -lD~~~~~~~~~~l~~l~~~~-----~~h~~~-~~~~-~~--~~l~~g~~~~~~~~~~~~  210 (212)
                       ||+.++..+++.|++++.++     .+|+.. ++.. .+  .+|++|++++.|+++++.
T Consensus       196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~  255 (617)
T TIGR00955       196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAV  255 (617)
T ss_pred             chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHH
Confidence             99999999999999998653     268874 4433 33  478899999999998864

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=100.00  E-value=4.7e-43  Score=317.16  Aligned_cols=197  Identities=14%  Similarity=0.186  Sum_probs=163.2

Q ss_pred             eeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccc----ccceEEEEcCCC---CCCCCC
Q psy8250          13 YKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL----MVKVSGFVPQHD---LTVDTL   85 (212)
Q Consensus        13 ~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~----~~~~i~~v~Q~~---~~~~~l   85 (212)
                      +|+++||+|++|+++||+||||||||||+++|+|+++| ++|+|+++|.++....    .++.++|+||++   .+++.+
T Consensus       278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p-~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~  356 (510)
T PRK15439        278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPA-RGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDA  356 (510)
T ss_pred             CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC-CCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCC
Confidence            69999999999999999999999999999999999988 6999999999875321    235689999985   478889


Q ss_pred             CHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CCh
Q psy8250          86 TVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDT  163 (212)
Q Consensus        86 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~  163 (212)
                      |+.+|+..................+.+.++++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||+ ||+
T Consensus       357 t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~  436 (510)
T PRK15439        357 PLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDV  436 (510)
T ss_pred             cHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcCh
Confidence            9999986431110000011222345688999999997 68899999999999999999999999999999999999 999


Q ss_pred             hhHHHHHHHHHHHHhhc-----CcchHHHHHHHH---HHHHhcCeeecCCchhhh
Q psy8250         164 LTVHEHMTLMARLKMDR-----NLHHVERARTVD---ALLKELGLLKCRPADELN  210 (212)
Q Consensus       164 ~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~  210 (212)
                      .+++.++++|+++++++     .+||++++...+   .+|++|+++..++++++.
T Consensus       437 ~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~  491 (510)
T PRK15439        437 SARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAIN  491 (510)
T ss_pred             hHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCC
Confidence            99999999999997653     379999987643   478899999999887764

>KOG0055|consensus

Probab=100.00  E-value=3.8e-44  Score=338.91  Aligned_cols=208  Identities=19%  Similarity=0.292  Sum_probs=168.6

Q ss_pred             cccccccCCc---ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250           2 ETFHPLFGDT---NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV   75 (212)
Q Consensus         2 ~~l~~~~~~~---~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v   75 (212)
                      +|++++|..+   .+|+++||+|++|+.++|+|||||||||++++|.+++.| ++|+|++||.++..   ..++.+||.|
T Consensus       354 ~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP-~~G~V~idG~di~~~~~~~lr~~iglV  432 (1228)
T KOG0055|consen  354 RNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDP-TSGEVLIDGEDIRNLNLKWLRSQIGLV  432 (1228)
T ss_pred             EEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCC-CCceEEEcCccchhcchHHHHhhcCee
Confidence            5788999654   599999999999999999999999999999999999999 69999999999864   3567889999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHc--CCccccCCCCCCCChHHHHHHHHHHHHhhCCCeE
Q psy8250          76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGF  153 (212)
Q Consensus        76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~ll  153 (212)
                      +|+|.+|. .|++||+.++..-..............+.+++..+  |++.....+..+||||||||++|||||+++|+||
T Consensus       433 ~QePvlF~-~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~IL  511 (1228)
T KOG0055|consen  433 SQEPVLFA-TTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKIL  511 (1228)
T ss_pred             eechhhhc-ccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEE
Confidence            99997665 59999999864321101111111122234444444  4444445555679999999999999999999999


Q ss_pred             EecCCCC-CChhhHHHHHHHHHHHHhhcC----cchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250         154 VPQHDLT-VDTLTVHEHMTLMARLKMDRN----LHHVERARTVD--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       154 ilDEPt~-lD~~~~~~~~~~l~~l~~~~~----~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      ||||||| ||+.+.+.+.+.|.+....++    +|.+..++..+  .++++|+++..|+++|+-.
T Consensus       512 LLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~  576 (1228)
T KOG0055|consen  512 LLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIA  576 (1228)
T ss_pred             EecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHHh
Confidence            9999999 999999999999999887654    59999998866  4799999999999999753

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=100.00  E-value=5.2e-43  Score=279.72  Aligned_cols=170  Identities=27%  Similarity=0.379  Sum_probs=143.7

Q ss_pred             CcccccccCC----cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCC--CCCceEEEECCEeCCcccccceEEE
Q psy8250           1 METFHPLFGD----TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ--GDVDGQILLNGLEVEKNLMVKVSGF   74 (212)
Q Consensus         1 ~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~--p~~~G~I~~~g~~~~~~~~~~~i~~   74 (212)
                      ++++++.|++    +.+++++||++++|++++|+||||||||||+++|+|+..  | ++|+|.++|+++. ...++.++|
T Consensus         6 ~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~-~~G~i~~~g~~~~-~~~~~~i~~   83 (192)
T cd03232           6 WKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGV-ITGEILINGRPLD-KNFQRSTGY   83 (192)
T ss_pred             EeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCC-cceEEEECCEehH-HHhhhceEE
Confidence            4688999964    679999999999999999999999999999999999863  6 6999999999875 334567999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEE
Q psy8250          75 VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFV  154 (212)
Q Consensus        75 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~lli  154 (212)
                      ++|++.+++.+|++||+.+....                   +             +|||||+||++|||||+.+|+++|
T Consensus        84 ~~q~~~~~~~~tv~~~l~~~~~~-------------------~-------------~LSgGe~qrv~la~al~~~p~vll  131 (192)
T cd03232          84 VEQQDVHSPNLTVREALRFSALL-------------------R-------------GLSVEQRKRLTIGVELAAKPSILF  131 (192)
T ss_pred             ecccCccccCCcHHHHHHHHHHH-------------------h-------------cCCHHHhHHHHHHHHHhcCCcEEE
Confidence            99999999999999999864210                   0             899999999999999999999999


Q ss_pred             ecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHH-HHH-HH--HHHHh-cCeeecC
Q psy8250         155 PQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVER-ART-VD--ALLKE-LGLLKCR  204 (212)
Q Consensus       155 lDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~-~~~-~~--~~l~~-g~~~~~~  204 (212)
                      +||||+ ||+.++..++++|+++++..     .+|+.+. +.. ++  .+|++ |++++.|
T Consensus       132 lDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g  192 (192)
T cd03232         132 LDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG  192 (192)
T ss_pred             EeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence            999999 99999999999999987543     2799873 433 23  46777 8877654

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=100.00  E-value=1.5e-43  Score=279.55  Aligned_cols=165  Identities=22%  Similarity=0.347  Sum_probs=140.9

Q ss_pred             CcccccccCCc--ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc--ccccceEEEEc
Q psy8250           1 METFHPLFGDT--NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK--NLMVKVSGFVP   76 (212)
Q Consensus         1 ~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~--~~~~~~i~~v~   76 (212)
                      ++++++.|++.  .+++++||++++|++++|+||||||||||+++|+|+.+| .+|+|.++|.++..  ..+++.++|++
T Consensus         3 ~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~i~~~~   81 (178)
T cd03247           3 INNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKP-QQGEITLDGVPVSDLEKALSSLISVLN   81 (178)
T ss_pred             EEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC-CCCEEEECCEEHHHHHHHHHhhEEEEc
Confidence            36789999765  699999999999999999999999999999999999988 69999999997743  23456799999


Q ss_pred             CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250          77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ  156 (212)
Q Consensus        77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD  156 (212)
                      |++.+++ .|++||+                                     +.+||+||+||++|||||+.+|+++|||
T Consensus        82 q~~~~~~-~tv~~~i-------------------------------------~~~LS~G~~qrv~laral~~~p~~lllD  123 (178)
T cd03247          82 QRPYLFD-TTLRNNL-------------------------------------GRRFSGGERQRLALARILLQDAPIVLLD  123 (178)
T ss_pred             cCCeeec-ccHHHhh-------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence            9988775 6888876                                     6789999999999999999999999999


Q ss_pred             CCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecC
Q psy8250         157 HDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCR  204 (212)
Q Consensus       157 EPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~  204 (212)
                      |||+ ||+.+++.++++|+++++..    .+|+.+.+...+  .+|++|++++.|
T Consensus       124 EP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~  178 (178)
T cd03247         124 EPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG  178 (178)
T ss_pred             CCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence            9999 99999999999999986432    269998875433  357788876543

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=100.00  E-value=9.4e-44  Score=332.05  Aligned_cols=204  Identities=20%  Similarity=0.284  Sum_probs=166.2

Q ss_pred             CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250           1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV   75 (212)
Q Consensus         1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v   75 (212)
                      +++++++|++  +.+|+|+||++++|+.++|+||||||||||+++|+|+++| ++|+|.+||.++..   ..+++.++||
T Consensus       458 ~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p-~~G~I~idg~~i~~~~~~~~r~~i~~v  536 (694)
T TIGR01846       458 FENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTP-QHGQVLVDGVDLAIADPAWLRRQMGVV  536 (694)
T ss_pred             EEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEehhhCCHHHHHHhCeEE
Confidence            3688999953  4699999999999999999999999999999999999999 69999999998854   3467889999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHH-----HHHHHHHHHHc--CCccccCCCCCCCChHHHHHHHHHHHHhh
Q psy8250          76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER-----ARTVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQTII  148 (212)
Q Consensus        76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--gl~~~~~~~~~~LSgGqrqRv~lA~al~~  148 (212)
                      +|++.+|+. |++||+.++..     ..+.++.     ...+.++++.+  |++........+||||||||++|||||++
T Consensus       537 ~q~~~lf~~-ti~eNi~~~~~-----~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~  610 (694)
T TIGR01846       537 LQENVLFSR-SIRDNIALCNP-----GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVG  610 (694)
T ss_pred             ccCCeehhh-hHHHHHhcCCC-----CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHh
Confidence            999998875 99999987421     1111111     11233444444  45555556677899999999999999999


Q ss_pred             CCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250         149 VQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       149 ~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      +|+++||||||+ ||+.+.+.+++.|+++....    .+|+++.+..++  .+|++|+++++|+.+++.+
T Consensus       611 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~  680 (694)
T TIGR01846       611 NPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLA  680 (694)
T ss_pred             CCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence            999999999999 99999999999999986433    379998887655  4788999999999998754

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=100.00  E-value=1.1e-42  Score=283.89  Aligned_cols=189  Identities=26%  Similarity=0.289  Sum_probs=154.9

Q ss_pred             EEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCC--CCCCHHHHHHHHHh
Q psy8250          19 GIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTV--DTLTVHEHMTLMAR   96 (212)
Q Consensus        19 ~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~--~~ltv~e~l~~~~~   96 (212)
                      |+|++|++++|+||||||||||+++|+|+++| ++|+|.++|+++..  .++.++|+||++.++  +.+|+.+|+.++..
T Consensus         1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~   77 (223)
T TIGR03771         1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPP-AKGTVKVAGASPGK--GWRHIGYVPQRHEFAWDFPISVAHTVMSGRT   77 (223)
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCccchH--hhCcEEEecccccccCCCCccHHHHHHhccc
Confidence            57899999999999999999999999999998 69999999987632  345799999998764  34799999987432


Q ss_pred             hh-cccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHH
Q psy8250          97 LK-MDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMA  174 (212)
Q Consensus        97 ~~-~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~  174 (212)
                      .. .............+.++++.+++.+..++++.+||+|||||++|||||+.+|+++||||||+ ||+.++..+.++|+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~  157 (223)
T TIGR03771        78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFI  157 (223)
T ss_pred             cccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence            11 00001112334568889999999988899999999999999999999999999999999999 99999999999999


Q ss_pred             HHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250         175 RLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       175 ~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      +++++.     .+|+++.+... +  .++ +|+++..|+++++.+
T Consensus       158 ~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~  201 (223)
T TIGR03771       158 ELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQD  201 (223)
T ss_pred             HHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcC
Confidence            987643     27999987654 2  356 799999999887743

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=100.00  E-value=1.2e-43  Score=324.59  Aligned_cols=199  Identities=20%  Similarity=0.258  Sum_probs=163.8

Q ss_pred             cccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEc
Q psy8250           2 ETFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVP   76 (212)
Q Consensus         2 ~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~   76 (212)
                      ++++++|.+  ..+|+|+||++++|++++|+||||||||||+++|+|+++| .+|+|.++|.++..   ..+++.++|+|
T Consensus       334 ~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~-~~G~I~i~g~~i~~~~~~~~~~~i~~v~  412 (571)
T TIGR02203       334 RNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEP-DSGQILLDGHDLADYTLASLRRQVALVS  412 (571)
T ss_pred             EEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCC-CCCeEEECCEeHHhcCHHHHHhhceEEc
Confidence            678888854  5699999999999999999999999999999999999999 69999999998753   34677899999


Q ss_pred             CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-----------ccCCCCCCCChHHHHHHHHHHH
Q psy8250          77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-----------CKNSVLNVLSGGERKRVALAVQ  145 (212)
Q Consensus        77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgGqrqRv~lA~a  145 (212)
                      |+|.+|+. |++||+.++..    ...+    ++++.++++.+|+.+           ........||||||||++||||
T Consensus       413 Q~~~lf~~-Ti~~Ni~~~~~----~~~~----~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARa  483 (571)
T TIGR02203       413 QDVVLFND-TIANNIAYGRT----EQAD----RAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARA  483 (571)
T ss_pred             cCcccccc-cHHHHHhcCCC----CCCC----HHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHH
Confidence            99998876 99999987521    0111    234555566655543           2333345799999999999999


Q ss_pred             HhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHHH--HHHhcCeeecCCchhhh
Q psy8250         146 TIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVDA--LLKELGLLKCRPADELN  210 (212)
Q Consensus       146 l~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~~--~l~~g~~~~~~~~~~~~  210 (212)
                      ++.+|+++||||||+ ||+.+.+.+++.|.++.+..    .||+.+....++.  .+++|+++..|+.+++.
T Consensus       484 ll~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~  555 (571)
T TIGR02203       484 LLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELL  555 (571)
T ss_pred             HhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence            999999999999999 99999999999999886543    3899988766654  57799999999988874

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=100.00  E-value=4.8e-42  Score=286.72  Aligned_cols=188  Identities=16%  Similarity=0.162  Sum_probs=160.3

Q ss_pred             CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHH
Q psy8250          10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHE   89 (212)
Q Consensus        10 ~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e   89 (212)
                      ...+|+++||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.          +++++|++.+++.+|+.+
T Consensus        36 ~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p-~~G~I~~~g~----------~~~~~~~~~~~~~~tv~e  104 (264)
T PRK13546         36 TFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSP-TVGKVDRNGE----------VSVIAISAGLSGQLTGIE  104 (264)
T ss_pred             ceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC-CceEEEECCE----------EeEEecccCCCCCCcHHH
Confidence            34599999999999999999999999999999999999998 6999999985          356778777778899999


Q ss_pred             HHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHH
Q psy8250          90 HMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHE  168 (212)
Q Consensus        90 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~  168 (212)
                      |+.+.....   ..........+..+++.+++.+..++++.+||+||+||++|||||+.+|++|||||||+ ||+.++..
T Consensus       105 nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~  181 (264)
T PRK13546        105 NIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQK  181 (264)
T ss_pred             HHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHH
Confidence            998754332   12333444566788899999988999999999999999999999999999999999999 99999999


Q ss_pred             HHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250         169 HMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       169 ~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      ++++|.++++..     .+|+.+.+... +  .+|++|+++..|+++++.+
T Consensus       182 l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~  232 (264)
T PRK13546        182 CLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLP  232 (264)
T ss_pred             HHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHHHH
Confidence            999999987543     27999888664 2  4788999999999888754

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=100.00  E-value=1.4e-43  Score=324.49  Aligned_cols=200  Identities=20%  Similarity=0.263  Sum_probs=163.5

Q ss_pred             CcccccccCC---cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEE
Q psy8250           1 METFHPLFGD---TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGF   74 (212)
Q Consensus         1 ~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~   74 (212)
                      ++++++.|++   +.+|+|+||++++||.++|+||||||||||+++|+|+++| .+|+|.++|.+++.   ..+++.++|
T Consensus       340 ~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p-~~G~I~i~g~~i~~~~~~~~~~~i~~  418 (576)
T TIGR02204       340 FEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDP-QSGRILLDGVDLRQLDPAELRARMAL  418 (576)
T ss_pred             EEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCC-CCCEEEECCEEHHhcCHHHHHHhceE
Confidence            3578888863   4699999999999999999999999999999999999999 69999999998854   345678999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCC-----------ccccCCCCCCCChHHHHHHHHH
Q psy8250          75 VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGL-----------LKCKNSVLNVLSGGERKRVALA  143 (212)
Q Consensus        75 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LSgGqrqRv~lA  143 (212)
                      +||+|.+|+. |++||+.++..     ..+    .+.+.++++.+++           +.........||||||||++||
T Consensus       419 ~~Q~~~lf~~-Ti~~Ni~~~~~-----~~~----~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~la  488 (576)
T TIGR02204       419 VPQDPVLFAA-SVMENIRYGRP-----DAT----DEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIA  488 (576)
T ss_pred             EccCCccccc-cHHHHHhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHH
Confidence            9999998876 99999987421     111    2234445555544           3333445567999999999999


Q ss_pred             HHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHHH--HHHhcCeeecCCchhhhc
Q psy8250         144 VQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVDA--LLKELGLLKCRPADELNR  211 (212)
Q Consensus       144 ~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~~--~l~~g~~~~~~~~~~~~~  211 (212)
                      ||++.+|+++||||||+ +|+.+.+.+++.|+++.+..    .||+.+....++.  .+++|++++.|+++++.+
T Consensus       489 Ral~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~  563 (576)
T TIGR02204       489 RAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIA  563 (576)
T ss_pred             HHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHH
Confidence            99999999999999999 99999999999999986432    3799988766654  577999999999888753

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=100.00  E-value=1.9e-43  Score=324.28  Aligned_cols=204  Identities=24%  Similarity=0.291  Sum_probs=165.3

Q ss_pred             CcccccccCC-cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEc
Q psy8250           1 METFHPLFGD-TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVP   76 (212)
Q Consensus         1 ~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~   76 (212)
                      ++++++.|++ +.+++|+||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++..   ..+++.++|++
T Consensus       337 ~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~v~  415 (585)
T TIGR01192       337 FRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDP-TVGQILIDGIDINTVTRESLRKSIATVF  415 (585)
T ss_pred             EEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCC-CCCEEEECCEEhhhCCHHHHHhheEEEc
Confidence            3688999975 5699999999999999999999999999999999999999 69999999998753   34677899999


Q ss_pred             CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHH-----HHHHHHHc--CCccccCCCCCCCChHHHHHHHHHHHHhhC
Q psy8250          77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART-----VDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQTIIV  149 (212)
Q Consensus        77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LSgGqrqRv~lA~al~~~  149 (212)
                      |++.+++ .|++||+.++..     ..+.++....     +.+.+..+  |++.........||||||||++|||||+.+
T Consensus       416 q~~~lf~-~ti~~Ni~~~~~-----~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~  489 (585)
T TIGR01192       416 QDAGLFN-RSIRENIRLGRE-----GATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKN  489 (585)
T ss_pred             cCCccCc-ccHHHHHhcCCC-----CCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence            9998886 499999987521     1112111111     22333333  455556677789999999999999999999


Q ss_pred             CCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250         150 QSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       150 p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      |+++||||||+ ||+.+.+.+.+.|.++....    .+|+.+.+..++  .+|++|++++.|+.+++.+
T Consensus       490 p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~  558 (585)
T TIGR01192       490 APILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQ  558 (585)
T ss_pred             CCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHH
Confidence            99999999999 99999999999999886533    379998886655  3688999999999888753

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=100.00  E-value=8.4e-43  Score=280.22  Aligned_cols=172  Identities=18%  Similarity=0.222  Sum_probs=146.6

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCC--CCCCceEEEECCEeCCcc---c-ccceEEE
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRI--QGDVDGQILLNGLEVEKN---L-MVKVSGF   74 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~--~p~~~G~I~~~g~~~~~~---~-~~~~i~~   74 (212)
                      ++++++.|+++.+++|+||++.+|++++|+||||||||||+++|+|+.  .| ++|+|.++|.++...   . .+..++|
T Consensus         3 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p-~~G~i~~~g~~~~~~~~~~~~~~~i~~   81 (200)
T cd03217           3 IKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEV-TEGEILFKGEDITDLPPEERARLGIFL   81 (200)
T ss_pred             EEEEEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCC-CccEEEECCEECCcCCHHHHhhCcEEE
Confidence            468999998888999999999999999999999999999999999994  67 699999999988542   1 2345999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEE
Q psy8250          75 VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFV  154 (212)
Q Consensus        75 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~lli  154 (212)
                      +||++.+++..++.+++                                  +....+|||||+||++|||||+.+|+++|
T Consensus        82 v~q~~~~~~~~~~~~~l----------------------------------~~~~~~LS~G~~qrv~laral~~~p~ill  127 (200)
T cd03217          82 AFQYPPEIPGVKNADFL----------------------------------RYVNEGFSGGEKKRNEILQLLLLEPDLAI  127 (200)
T ss_pred             eecChhhccCccHHHHH----------------------------------hhccccCCHHHHHHHHHHHHHhcCCCEEE
Confidence            99999888888877665                                  11235899999999999999999999999


Q ss_pred             ecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHH-H-H--HHHHhcCeeecCCch
Q psy8250         155 PQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERART-V-D--ALLKELGLLKCRPAD  207 (212)
Q Consensus       155 lDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~-~-~--~~l~~g~~~~~~~~~  207 (212)
                      |||||+ ||+.++..++++|++++++.     .+|+++.+.. . +  .+|++|++++.|+.+
T Consensus       128 lDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~~~  190 (200)
T cd03217         128 LDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKE  190 (200)
T ss_pred             EeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEccHH
Confidence            999999 99999999999999997543     2699998764 3 3  478899999998544

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=100.00  E-value=1.9e-42  Score=274.23  Aligned_cols=159  Identities=21%  Similarity=0.218  Sum_probs=136.8

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc----cccceEEEEc
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN----LMVKVSGFVP   76 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~----~~~~~i~~v~   76 (212)
                      ++++++.|    +++++||++++|++++|+||||||||||+++|+|+++| ++|+|+++|.++...    ..++.++|++
T Consensus         7 ~~~l~~~~----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~i~~~~   81 (182)
T cd03215           7 VRGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPP-ASGEITLDGKPVTRRSPRDAIRAGIAYVP   81 (182)
T ss_pred             EeccEEEe----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEECCccCHHHHHhCCeEEec
Confidence            36788887    89999999999999999999999999999999999998 699999999987532    2356799999


Q ss_pred             CCC---CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeE
Q psy8250          77 QHD---LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGF  153 (212)
Q Consensus        77 Q~~---~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~ll  153 (212)
                      |++   .+++.+|++||+.+...                                   ||+|||||++|||||+.+|+++
T Consensus        82 q~~~~~~~~~~~t~~e~l~~~~~-----------------------------------LS~G~~qrl~la~al~~~p~ll  126 (182)
T cd03215          82 EDRKREGLVLDLSVAENIALSSL-----------------------------------LSGGNQQKVVLARWLARDPRVL  126 (182)
T ss_pred             CCcccCcccCCCcHHHHHHHHhh-----------------------------------cCHHHHHHHHHHHHHccCCCEE
Confidence            985   57888999999876310                                   9999999999999999999999


Q ss_pred             EecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcC
Q psy8250         154 VPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELG  199 (212)
Q Consensus       154 ilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~  199 (212)
                      ||||||+ ||+.+++.+.++|++++.+.     .+|+.+.+... +  .+|++|+
T Consensus       127 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~  181 (182)
T cd03215         127 ILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGR  181 (182)
T ss_pred             EECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCc
Confidence            9999999 99999999999999987543     26999887663 2  3566665

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=100.00  E-value=1.8e-42  Score=297.22  Aligned_cols=179  Identities=24%  Similarity=0.316  Sum_probs=155.3

Q ss_pred             EECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHH
Q psy8250          29 IMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVE  107 (212)
Q Consensus        29 iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~  107 (212)
                      |+||||||||||+++|+|+++| ++|+|.++|+++... ..++.++|+||++.+|+.+|+.||+.++....   ..+..+
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~p-~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~   76 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQP-DSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPRAE   76 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCCC-CceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCHHH
Confidence            6899999999999999999998 699999999988542 23567999999999999999999999876432   123344


Q ss_pred             HHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----
Q psy8250         108 RARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----  180 (212)
Q Consensus       108 ~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----  180 (212)
                      ...++.++++.+++.+..++++.+|||||||||+|||||+.+|+++||||||+ ||+.++..+.++|++++++ .     
T Consensus        77 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiii  156 (325)
T TIGR01187        77 IKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVF  156 (325)
T ss_pred             HHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence            55678899999999999999999999999999999999999999999999999 9999999999999998765 2     


Q ss_pred             CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250         181 NLHHVERARTV-D--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       181 ~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      .|||++++... +  .+|++|+++..|+++++.+
T Consensus       157 vTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~  190 (325)
T TIGR01187       157 VTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYE  190 (325)
T ss_pred             EeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            37999988664 3  4788999999999998764

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=100.00  E-value=3.4e-43  Score=278.09  Aligned_cols=165  Identities=31%  Similarity=0.453  Sum_probs=140.9

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEEEcC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGFVPQ   77 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~v~Q   77 (212)
                      ++++++.|++..+|+++||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++...   .+++.++|+||
T Consensus         2 ~~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~-~~G~v~~~g~~~~~~~~~~~~~~i~~~~q   80 (180)
T cd03214           2 VENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKP-SSGEILLDGKDLASLSPKELARKIAYVPQ   80 (180)
T ss_pred             eeEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEECCcCCHHHHHHHHhHHHH
Confidence            46899999888899999999999999999999999999999999999998 699999999887431   12334566665


Q ss_pred             CCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecC
Q psy8250          78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQH  157 (212)
Q Consensus        78 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDE  157 (212)
                                                           +++.+|+.+..++.+.+||+||+||++|||||+.+|+++||||
T Consensus        81 -------------------------------------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE  123 (180)
T cd03214          81 -------------------------------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDE  123 (180)
T ss_pred             -------------------------------------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence                                                 6777888777788899999999999999999999999999999


Q ss_pred             CCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeec
Q psy8250         158 DLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKC  203 (212)
Q Consensus       158 Pt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~  203 (212)
                      ||+ ||+.++..+.++|.+++.+ .     .+|+.+.+... +  .++++|+++..
T Consensus       124 P~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~  179 (180)
T cd03214         124 PTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQ  179 (180)
T ss_pred             CccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEec
Confidence            999 9999999999999999765 2     26999887553 2  46778877654

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=100.00  E-value=3e-42  Score=307.43  Aligned_cols=196  Identities=16%  Similarity=0.168  Sum_probs=163.4

Q ss_pred             cccccccCC---cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCC
Q psy8250           2 ETFHPLFGD---TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQH   78 (212)
Q Consensus         2 ~~l~~~~~~---~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~   78 (212)
                      +++++.|++   +.+|+++||+|++|+++||+||||||||||+++|+|+++| ++|+|.++|.+.          ++.+.
T Consensus        25 knL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P-~sGeI~I~G~~~----------~i~~~   93 (549)
T PRK13545         25 KDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMP-NKGTVDIKGSAA----------LIAIS   93 (549)
T ss_pred             EEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCC-CceEEEECCEee----------eEEec
Confidence            567777766   4699999999999999999999999999999999999998 699999999752          12223


Q ss_pred             CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250          79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD  158 (212)
Q Consensus        79 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP  158 (212)
                      +.+++.+|++||+.+.....   .....+..+.+.++++.+++.+..++++.+||||||||++|||||+.+|++||||||
T Consensus        94 ~~l~~~lTV~EnL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEP  170 (549)
T PRK13545         94 SGLNGQLTGIENIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEA  170 (549)
T ss_pred             cccCCCCcHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence            45667789999998754332   123344455678899999999889999999999999999999999999999999999


Q ss_pred             CC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250         159 LT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       159 t~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      |+ ||+.++..++++|++++.+.     .+|+++.+... +  .+|++|+++..|+++++.+
T Consensus       171 TsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~  232 (549)
T PRK13545        171 LSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVD  232 (549)
T ss_pred             cccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            99 99999999999999987543     37999988664 3  4688999999999887653

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=100.00  E-value=2.7e-43  Score=319.82  Aligned_cols=168  Identities=24%  Similarity=0.292  Sum_probs=140.7

Q ss_pred             CcccccccCC-cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc--ccccceEEEEcC
Q psy8250           1 METFHPLFGD-TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK--NLMVKVSGFVPQ   77 (212)
Q Consensus         1 ~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~--~~~~~~i~~v~Q   77 (212)
                      +++++++|++ +.+|+|+||++++|+.++|+||||||||||+++|+|+++| ++|+|.+||.++..  ..+++.++||||
T Consensus       337 ~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-~~G~I~i~g~~i~~~~~~lr~~i~~V~Q  415 (529)
T TIGR02868       337 LRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDP-LQGEVTLDGVSVSSLQDELRRRISVFAQ  415 (529)
T ss_pred             EEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEECCEEhhhHHHHHHhheEEEcc
Confidence            3688999965 5699999999999999999999999999999999999999 69999999998753  345678999999


Q ss_pred             CCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccc-----------cCCCCCCCChHHHHHHHHHHHH
Q psy8250          78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKC-----------KNSVLNVLSGGERKRVALAVQT  146 (212)
Q Consensus        78 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGqrqRv~lA~al  146 (212)
                      +|.+|+. |++||+.++..     ..    .++++.++++..++.+.           .......||||||||++|||||
T Consensus       416 ~~~lF~~-TI~eNI~~g~~-----~~----~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARal  485 (529)
T TIGR02868       416 DAHLFDT-TVRDNLRLGRP-----DA----TDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARAL  485 (529)
T ss_pred             Ccccccc-cHHHHHhccCC-----CC----CHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHH
Confidence            9999877 99999998521     11    13345566666665432           2333457999999999999999


Q ss_pred             hhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh
Q psy8250         147 IIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD  179 (212)
Q Consensus       147 ~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~  179 (212)
                      +++|+++||||||| ||+.+.+.+.+.+.++...
T Consensus       486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~  519 (529)
T TIGR02868       486 LADAPILLLDEPTEHLDAGTESELLEDLLAALSG  519 (529)
T ss_pred             hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCC
Confidence            99999999999999 9999999999999887543

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=9.5e-43  Score=285.57  Aligned_cols=172  Identities=23%  Similarity=0.329  Sum_probs=152.1

Q ss_pred             cccccccCC---------cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceE
Q psy8250           2 ETFHPLFGD---------TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS   72 (212)
Q Consensus         2 ~~l~~~~~~---------~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i   72 (212)
                      +++++.|..         ..+++||||+|++||++||+|+||||||||-|+|.|++.| ++|+|+|+|+++....     
T Consensus         8 ~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~p-t~G~i~f~g~~i~~~~-----   81 (268)
T COG4608           8 KNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEP-TSGEILFEGKDITKLS-----   81 (268)
T ss_pred             eccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCC-CCceEEEcCcchhhcc-----
Confidence            567777742         3799999999999999999999999999999999999999 7999999999864322     


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-ccCCCCCCCChHHHHHHHHHHHHhhCCC
Q psy8250          73 GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQTIIVQS  151 (212)
Q Consensus        73 ~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqrqRv~lA~al~~~p~  151 (212)
                                                      ..+..+++.++|+.+|+.+ .+++++++|||||+||++|||||+.+|+
T Consensus        82 --------------------------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~  129 (268)
T COG4608          82 --------------------------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPK  129 (268)
T ss_pred             --------------------------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCc
Confidence                                            1245667899999999964 7999999999999999999999999999


Q ss_pred             eEEecCCCC-CChhhHHHHHHHHHHHHhhcC------cchHHHHHHHH---HHHHhcCeeecCCchhhhc
Q psy8250         152 GFVPQHDLT-VDTLTVHEHMTLMARLKMDRN------LHHVERARTVD---ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       152 llilDEPt~-lD~~~~~~~~~~l~~l~~~~~------~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~~  211 (212)
                      ++++|||+| ||...+.+++++|.+++++.+      +||+..++..+   .+|+.|+++..|+.+++..
T Consensus       130 liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~  199 (268)
T COG4608         130 LIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFS  199 (268)
T ss_pred             EEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhh
Confidence            999999999 999999999999999998753      79999998753   5899999999999988754

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=100.00  E-value=7.7e-43  Score=274.39  Aligned_cols=157  Identities=26%  Similarity=0.335  Sum_probs=134.8

Q ss_pred             CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEEE
Q psy8250           1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGFV   75 (212)
Q Consensus         1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~v   75 (212)
                      ++++++.|++  ..+++++||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++...   .+++.++|+
T Consensus         3 ~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~   81 (173)
T cd03246           3 VENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRP-TSGRVRLDGADISQWDPNELGDHVGYL   81 (173)
T ss_pred             EEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCC-CCCeEEECCEEcccCCHHHHHhheEEE
Confidence            3688999975  4699999999999999999999999999999999999998 699999999987532   345679999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEe
Q psy8250          76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVP  155 (212)
Q Consensus        76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llil  155 (212)
                      +|++.+++. |++||+                                        |||||+||++|||||+.+|+++||
T Consensus        82 ~q~~~~~~~-tv~~~l----------------------------------------LS~G~~qrv~la~al~~~p~~lll  120 (173)
T cd03246          82 PQDDELFSG-SIAENI----------------------------------------LSGGQRQRLGLARALYGNPRILVL  120 (173)
T ss_pred             CCCCccccC-cHHHHC----------------------------------------cCHHHHHHHHHHHHHhcCCCEEEE
Confidence            999987774 998876                                        999999999999999999999999


Q ss_pred             cCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHHH--HHHHhcC
Q psy8250         156 QHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTVD--ALLKELG  199 (212)
Q Consensus       156 DEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~~--~~l~~g~  199 (212)
                      ||||+ ||+.++..++++|+++++++     .+|+.+.+..++  .+|++|+
T Consensus       121 DEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~  172 (173)
T cd03246         121 DEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGR  172 (173)
T ss_pred             ECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCC
Confidence            99999 99999999999999997643     279988764322  2444554

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=9.5e-43  Score=318.01  Aligned_cols=199  Identities=18%  Similarity=0.128  Sum_probs=164.2

Q ss_pred             CcccccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCC
Q psy8250           1 METFHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHD   79 (212)
Q Consensus         1 ~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~   79 (212)
                      ++++++.|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.+++.        ..+||++|++
T Consensus         9 i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p-~~G~i~~~~~--------~~i~~v~Q~~   79 (556)
T PRK11819          9 MNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE-FEGEARPAPG--------IKVGYLPQEP   79 (556)
T ss_pred             EeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEecCC--------CEEEEEecCC
Confidence            468999998 78899999999999999999999999999999999999998 6999999742        3589999999


Q ss_pred             CCCCCCCHHHHHHHHHh-hhc----------ccCCCH----------------------HHHHHHHHHHHHHcCCccccC
Q psy8250          80 LTVDTLTVHEHMTLMAR-LKM----------DRNLHH----------------------VERARTVDALLKELGLLKCKN  126 (212)
Q Consensus        80 ~~~~~ltv~e~l~~~~~-~~~----------~~~~~~----------------------~~~~~~~~~~l~~~gl~~~~~  126 (212)
                      .+++.+|+.||+.++.. +..          ......                      .+...++.++++.+|+.. .+
T Consensus        80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~  158 (556)
T PRK11819         80 QLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-WD  158 (556)
T ss_pred             CCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-cc
Confidence            99999999999987532 100          000000                      012356788999999964 78


Q ss_pred             CCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh--cCcchHHHHHHHH---HHHHhcCe
Q psy8250         127 SVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD--RNLHHVERARTVD---ALLKELGL  200 (212)
Q Consensus       127 ~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~--~~~h~~~~~~~~~---~~l~~g~~  200 (212)
                      +++.+|||||||||+|||||+.+|++|||||||+ ||+.++..+.++|+++...  .++||.+.+...+   .+|++|++
T Consensus       159 ~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~~l~~g~i  238 (556)
T PRK11819        159 AKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRGRG  238 (556)
T ss_pred             CchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEeCCEE
Confidence            9999999999999999999999999999999999 9999999999999987521  1379999887643   47889997


Q ss_pred             e-ecCCchhh
Q psy8250         201 L-KCRPADEL  209 (212)
Q Consensus       201 ~-~~~~~~~~  209 (212)
                      + +.|+.+++
T Consensus       239 ~~~~g~~~~~  248 (556)
T PRK11819        239 IPWEGNYSSW  248 (556)
T ss_pred             EEecCCHHHH
Confidence            6 77887764

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-42  Score=315.95  Aligned_cols=201  Identities=17%  Similarity=0.168  Sum_probs=163.7

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL   80 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~   80 (212)
                      +++++++|+++.+|+++||+|++|++++|+||||||||||||+|+|+++| ++|+|.++|.        ..++|++|++.
T Consensus         4 i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p-~~G~i~~~~~--------~~i~~~~q~~~   74 (530)
T PRK15064          4 TANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEP-SAGNVSLDPN--------ERLGKLRQDQF   74 (530)
T ss_pred             EEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEecCC--------CEEEEEeccCC
Confidence            46899999988899999999999999999999999999999999999998 6999999873        34899999998


Q ss_pred             CCCCCCHHHHHHHHHh-hh----------cccC------------------CCHHHHHHHHHHHHHHcCCccc-cCCCCC
Q psy8250          81 TVDTLTVHEHMTLMAR-LK----------MDRN------------------LHHVERARTVDALLKELGLLKC-KNSVLN  130 (212)
Q Consensus        81 ~~~~ltv~e~l~~~~~-~~----------~~~~------------------~~~~~~~~~~~~~l~~~gl~~~-~~~~~~  130 (212)
                      +++.+|++||+.++.. .+          ....                  ....+...++.++++.+|+.+. .++++.
T Consensus        75 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~  154 (530)
T PRK15064         75 AFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMS  154 (530)
T ss_pred             cCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchh
Confidence            9999999999986421 00          0000                  0001223567889999999764 457889


Q ss_pred             CCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh--cCcchHHHHHHH-H--HHHHhcCe-eec
Q psy8250         131 VLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD--RNLHHVERARTV-D--ALLKELGL-LKC  203 (212)
Q Consensus       131 ~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~--~~~h~~~~~~~~-~--~~l~~g~~-~~~  203 (212)
                      +|||||||||+|||||+.+|++|||||||+ ||+.++..+.++|.+....  .++||.+.+... +  .+|++|++ ++.
T Consensus       155 ~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~~  234 (530)
T PRK15064        155 EVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGELRVYP  234 (530)
T ss_pred             hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEec
Confidence            999999999999999999999999999999 9999999999998642111  137999988664 3  47889998 478


Q ss_pred             CCchhhh
Q psy8250         204 RPADELN  210 (212)
Q Consensus       204 ~~~~~~~  210 (212)
                      |+++++.
T Consensus       235 g~~~~~~  241 (530)
T PRK15064        235 GNYDEYM  241 (530)
T ss_pred             CCHHHHH
Confidence            8887664

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=100.00  E-value=2.7e-43  Score=322.48  Aligned_cols=199  Identities=18%  Similarity=0.268  Sum_probs=162.6

Q ss_pred             cccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEc
Q psy8250           2 ETFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVP   76 (212)
Q Consensus         2 ~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~   76 (212)
                      ++++++|++  ..+|+|+||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++..   ..+++.++|++
T Consensus       317 ~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p-~~G~i~~~g~~~~~~~~~~~~~~i~~v~  395 (569)
T PRK10789        317 NIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDV-SEGDIRFHDIPLTKLQLDSWRSRLAVVS  395 (569)
T ss_pred             EEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCC-CCCEEEECCEEHhhCCHHHHHhheEEEc
Confidence            567888854  5699999999999999999999999999999999999999 69999999998753   34567899999


Q ss_pred             CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcC-----------CccccCCCCCCCChHHHHHHHHHHH
Q psy8250          77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELG-----------LLKCKNSVLNVLSGGERKRVALAVQ  145 (212)
Q Consensus        77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~LSgGqrqRv~lA~a  145 (212)
                      |++.+|+. |++||+.++..     ..+    .+.+.++++..+           ++...+.....||||||||++||||
T Consensus       396 q~~~lf~~-ti~~Ni~~~~~-----~~~----~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARa  465 (569)
T PRK10789        396 QTPFLFSD-TVANNIALGRP-----DAT----QQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARA  465 (569)
T ss_pred             cCCeeccc-cHHHHHhcCCC-----CCC----HHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHH
Confidence            99998876 99999987421     111    122333444443           3444455667899999999999999


Q ss_pred             HhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250         146 TIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       146 l~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      |+++|+++||||||+ ||+.+...+++.|+++....    .+|+++.+..++  .+|++|+++..|+.+++.+
T Consensus       466 ll~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~  538 (569)
T PRK10789        466 LLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQ  538 (569)
T ss_pred             HhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHH
Confidence            999999999999999 99999999999999886432    379998776655  3688999999999888753

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.7e-43  Score=285.12  Aligned_cols=204  Identities=22%  Similarity=0.221  Sum_probs=171.8

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc----ccccceEEEEc
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK----NLMVKVSGFVP   76 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~----~~~~~~i~~v~   76 (212)
                      |+++++.|+++.+|+|||++|++||.++|+|||||||||||++++|..+| .+|.+.+.|+..-.    .+++++||+|.
T Consensus        34 l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~p-ssg~~~~~G~~~G~~~~~~elrk~IG~vS  112 (257)
T COG1119          34 LKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPP-SSGDVTLLGRRFGKGETIFELRKRIGLVS  112 (257)
T ss_pred             ecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCC-CCCceeeeeeeccCCcchHHHHHHhCccC
Confidence            57899999999999999999999999999999999999999999999988 69999999998732    45788999996


Q ss_pred             CC--CCCCCCCCHHHHHHHHHh--hhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCe
Q psy8250          77 QH--DLTVDTLTVHEHMTLMAR--LKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSG  152 (212)
Q Consensus        77 Q~--~~~~~~ltv~e~l~~~~~--~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~l  152 (212)
                      -.  ..+....+|+|.+..+..  .........++...++..+++.+|+.+..+++..+||-||||||.|||||+.+|++
T Consensus       113 ~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~L  192 (257)
T COG1119         113 SELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPEL  192 (257)
T ss_pred             HHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCE
Confidence            53  345567788887765432  11111122356677889999999999999999999999999999999999999999


Q ss_pred             EEecCCCC-CChhhHHHHHHHHHHHHhhc-------CcchHHHHHHH---HHHHHhcCeeecCC
Q psy8250         153 FVPQHDLT-VDTLTVHEHMTLMARLKMDR-------NLHHVERARTV---DALLKELGLLKCRP  205 (212)
Q Consensus       153 lilDEPt~-lD~~~~~~~~~~l~~l~~~~-------~~h~~~~~~~~---~~~l~~g~~~~~~~  205 (212)
                      ||||||++ ||..+++.+.+.|.++....       +||+.|++..+   ...+++|++++.|.
T Consensus       193 LiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~  256 (257)
T COG1119         193 LILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK  256 (257)
T ss_pred             EEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence            99999999 99999999999999997652       48999988654   24788999888763

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=100.00  E-value=5.7e-42  Score=317.51  Aligned_cols=206  Identities=21%  Similarity=0.270  Sum_probs=177.6

Q ss_pred             CcccccccCC----cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---c----cc
Q psy8250           1 METFHPLFGD----TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---L----MV   69 (212)
Q Consensus         1 ~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~----~~   69 (212)
                      ++++++.|++    ..+|+++||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++...   .    .+
T Consensus         7 ~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~-~~G~i~~~g~~i~~~~~~~~~~~~~   85 (648)
T PRK10535          7 LKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKP-TSGTYRVAGQDVATLDADALAQLRR   85 (648)
T ss_pred             EeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCeEEEECCEEcCcCCHHHHHHHHh
Confidence            4789999953    4699999999999999999999999999999999999998 699999999987542   1    14


Q ss_pred             ceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhC
Q psy8250          70 KVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIV  149 (212)
Q Consensus        70 ~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~  149 (212)
                      +.++|+||++.+++.+|+.||+.+.....   .....+..+++.++++.+|+.+..++.+.+||+||+||++|||||+.+
T Consensus        86 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~  162 (648)
T PRK10535         86 EHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNG  162 (648)
T ss_pred             ccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence            57999999999999999999998754322   223445566789999999999999999999999999999999999999


Q ss_pred             CCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHHH--HHHHhcCeeecCCchhhh
Q psy8250         150 QSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTVD--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       150 p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~  210 (212)
                      |+++||||||+ ||+.+++.+.++|++++++.     .+|+.+.+..++  .+|++|+++++|++++..
T Consensus       163 P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  231 (648)
T PRK10535        163 GQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV  231 (648)
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence            99999999999 99999999999999987543     379998775444  367899999999988765

>KOG0057|consensus

Probab=100.00  E-value=2.2e-43  Score=309.93  Aligned_cols=197  Identities=22%  Similarity=0.310  Sum_probs=166.4

Q ss_pred             cccccccCCcc-eeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEcC
Q psy8250           2 ETFHPLFGDTN-YKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQ   77 (212)
Q Consensus         2 ~~l~~~~~~~~-~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~Q   77 (212)
                      +|++..|++++ +|+++||+|++||.+||+|+|||||||++|+|.+++.  .+|+|.+||++++.   ..+|+.||||||
T Consensus       355 ~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d--~sG~I~IdG~dik~~~~~SlR~~Ig~VPQ  432 (591)
T KOG0057|consen  355 DDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD--YSGSILIDGQDIKEVSLESLRQSIGVVPQ  432 (591)
T ss_pred             EeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc--cCCcEEECCeeHhhhChHHhhhheeEeCC
Confidence            58899998876 9999999999999999999999999999999999887  49999999999854   457889999999


Q ss_pred             CCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-----------ccCCCCCCCChHHHHHHHHHHHH
Q psy8250          78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-----------CKNSVLNVLSGGERKRVALAVQT  146 (212)
Q Consensus        78 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgGqrqRv~lA~al  146 (212)
                      +..+|++ |+..|+.++...     .+    .+++.++.++.|+.+           ....+...|||||||||+||||+
T Consensus       433 d~~LFnd-TIl~NI~YGn~s-----as----~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~  502 (591)
T KOG0057|consen  433 DSVLFND-TILYNIKYGNPS-----AS----DEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAF  502 (591)
T ss_pred             cccccch-hHHHHhhcCCCC-----cC----HHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHH
Confidence            9998877 999999986432     11    334555666666644           33445567999999999999999


Q ss_pred             hhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHHH--HHHhcCeeecCCchhhh
Q psy8250         147 IIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVDA--LLKELGLLKCRPADELN  210 (212)
Q Consensus       147 ~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~~--~l~~g~~~~~~~~~~~~  210 (212)
                      +.+|+|+++||||| ||..+.+++++.+.......    ..|++..+..++.  ++++|++...|+.+|+-
T Consensus       503 lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell  573 (591)
T KOG0057|consen  503 LKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELL  573 (591)
T ss_pred             hcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHh
Confidence            99999999999999 99999999999998843332    2599999988764  78899999999988874

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=100.00  E-value=1.9e-42  Score=311.84  Aligned_cols=204  Identities=18%  Similarity=0.189  Sum_probs=162.2

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc----cccceEEEEc
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN----LMVKVSGFVP   76 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~----~~~~~i~~v~   76 (212)
                      ++++++.|+++.+|+|+||++++|++++|+||||||||||+++|+|+.++.++|+|+++|+++...    ..++.++|++
T Consensus       263 ~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~  342 (490)
T PRK10938        263 LNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVS  342 (490)
T ss_pred             EeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEEC
Confidence            468899998888999999999999999999999999999999999976532489999999876321    2345799999


Q ss_pred             CCCCCCC--CCCHHHHHHHHHhh--hcccCCCHHHHHHHHHHHHHHcCCcc-ccCCCCCCCChHHHHHHHHHHHHhhCCC
Q psy8250          77 QHDLTVD--TLTVHEHMTLMARL--KMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQTIIVQS  151 (212)
Q Consensus        77 Q~~~~~~--~ltv~e~l~~~~~~--~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqrqRv~lA~al~~~p~  151 (212)
                      |++.+++  ..++.+++.+....  ....... ....+.+.++++.+++.+ ..++++.+|||||||||+|||||+.+|+
T Consensus       343 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~  421 (490)
T PRK10938        343 SSLHLDYRVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPT  421 (490)
T ss_pred             HHHHhhcccCCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCC
Confidence            9876543  34676665543210  0000111 233456889999999987 8899999999999999999999999999


Q ss_pred             eEEecCCCC-CChhhHHHHHHHHHHHHhhc------CcchHHHHHH-H-H--HHHHhcCeeecCC
Q psy8250         152 GFVPQHDLT-VDTLTVHEHMTLMARLKMDR------NLHHVERART-V-D--ALLKELGLLKCRP  205 (212)
Q Consensus       152 llilDEPt~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~-~-~--~~l~~g~~~~~~~  205 (212)
                      +|||||||+ ||+.++..++++|++++++.      .+||++.+.. + +  .+|++|+++....
T Consensus       422 lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~~  486 (490)
T PRK10938        422 LLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYVQ  486 (490)
T ss_pred             EEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEeec
Confidence            999999999 99999999999999997653      2699998865 2 2  4788999876654

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=100.00  E-value=3.8e-42  Score=279.55  Aligned_cols=177  Identities=18%  Similarity=0.205  Sum_probs=141.6

Q ss_pred             cccccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-------cccceEE
Q psy8250           2 ETFHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-------LMVKVSG   73 (212)
Q Consensus         2 ~~l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-------~~~~~i~   73 (212)
                      .++++.|+ +..+++|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++...       ..++.++
T Consensus         4 ~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~i~   82 (218)
T cd03290           4 TNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQT-LEGKVHWSNKNESEPSFEATRSRNRYSVA   82 (218)
T ss_pred             eeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC-CCCeEEECCcccccccccccchhhcceEE
Confidence            46788886 45799999999999999999999999999999999999988 699999999876421       1345699


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-----------ccCCCCCCCChHHHHHHHH
Q psy8250          74 FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-----------CKNSVLNVLSGGERKRVAL  142 (212)
Q Consensus        74 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgGqrqRv~l  142 (212)
                      |++|++.++ ..|++||+.+....      ..    ....++++.+++.+           ..+.++..||||||||++|
T Consensus        83 ~~~q~~~~~-~~t~~~nl~~~~~~------~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~l  151 (218)
T cd03290          83 YAAQKPWLL-NATVEENITFGSPF------NK----QRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICV  151 (218)
T ss_pred             EEcCCCccc-cccHHHHHhhcCcC------CH----HHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHH
Confidence            999999877 57999999864211      11    12234445555432           2356789999999999999


Q ss_pred             HHHHhhCCCeEEecCCCC-CChhhHHHHHH--HHHHHHhhc-----CcchHHHHHH
Q psy8250         143 AVQTIIVQSGFVPQHDLT-VDTLTVHEHMT--LMARLKMDR-----NLHHVERART  190 (212)
Q Consensus       143 A~al~~~p~llilDEPt~-lD~~~~~~~~~--~l~~l~~~~-----~~h~~~~~~~  190 (212)
                      ||||+.+|+++||||||+ ||+.++..+++  +++.+++..     .+|+.+.+..
T Consensus       152 aral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~  207 (218)
T cd03290         152 ARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPH  207 (218)
T ss_pred             HHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhh
Confidence            999999999999999999 99999999998  666665532     2699887643

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.3e-42  Score=313.90  Aligned_cols=194  Identities=20%  Similarity=0.253  Sum_probs=163.9

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL   80 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~   80 (212)
                      ++++++.|+++.+|+++||+|++|++++|+||||||||||+++|+|++.| ++|+|.++|.        +.+||++|++.
T Consensus       322 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p-~~G~i~~~~~--------~~i~~~~q~~~  392 (530)
T PRK15064        322 VENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEP-DSGTVKWSEN--------ANIGYYAQDHA  392 (530)
T ss_pred             EEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCc--------eEEEEEccccc
Confidence            36889999888899999999999999999999999999999999999998 6999999873        35899999864


Q ss_pred             --CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecC
Q psy8250          81 --TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQH  157 (212)
Q Consensus        81 --~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDE  157 (212)
                        +++.+|+.+|+.+...    ..    .....+.++++.+++. +..++++.+||||||||++|||||+.+|++|||||
T Consensus       393 ~~~~~~~t~~~~~~~~~~----~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDE  464 (530)
T PRK15064        393 YDFENDLTLFDWMSQWRQ----EG----DDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDE  464 (530)
T ss_pred             ccCCCCCcHHHHHHHhcc----CC----ccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence              5567899999864211    00    1234678899999994 67899999999999999999999999999999999


Q ss_pred             CCC-CChhhHHHHHHHHHHHHhh--cCcchHHHHHHH-H--HHHHhcCee-ecCCchhhhc
Q psy8250         158 DLT-VDTLTVHEHMTLMARLKMD--RNLHHVERARTV-D--ALLKELGLL-KCRPADELNR  211 (212)
Q Consensus       158 Pt~-lD~~~~~~~~~~l~~l~~~--~~~h~~~~~~~~-~--~~l~~g~~~-~~~~~~~~~~  211 (212)
                      ||+ ||+.++..++++|+++...  ..|||.+.+... +  .+|++|+++ .+|+++++.+
T Consensus       465 Pt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~  525 (530)
T PRK15064        465 PTNHMDMESIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLR  525 (530)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHH
Confidence            999 9999999999999887321  137999988764 2  478899987 8888887654

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=100.00  E-value=3.3e-42  Score=314.26  Aligned_cols=200  Identities=19%  Similarity=0.123  Sum_probs=162.5

Q ss_pred             CcccccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCC
Q psy8250           1 METFHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHD   79 (212)
Q Consensus         1 ~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~   79 (212)
                      ++++++.|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.+++.        ..+||++|++
T Consensus         7 ~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p-~~G~i~~~~~--------~~i~~v~Q~~   77 (552)
T TIGR03719         7 MNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE-FNGEARPAPG--------IKVGYLPQEP   77 (552)
T ss_pred             EeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEecCC--------CEEEEEeccC
Confidence            478999997 77899999999999999999999999999999999999998 6999998752        3589999999


Q ss_pred             CCCCCCCHHHHHHHHHhh-hc----------ccCCCHHH----------------------HHHHHHHHHHHcCCccccC
Q psy8250          80 LTVDTLTVHEHMTLMARL-KM----------DRNLHHVE----------------------RARTVDALLKELGLLKCKN  126 (212)
Q Consensus        80 ~~~~~ltv~e~l~~~~~~-~~----------~~~~~~~~----------------------~~~~~~~~l~~~gl~~~~~  126 (212)
                      .+++.+|+.||+.++... ..          ....+..+                      ...++.++++.+|+.. .+
T Consensus        78 ~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~  156 (552)
T TIGR03719        78 QLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-WD  156 (552)
T ss_pred             CCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-cc
Confidence            999999999999874321 00          00000000                      1235667888888854 68


Q ss_pred             CCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh--cCcchHHHHHHH-H--HHHHhcCe
Q psy8250         127 SVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD--RNLHHVERARTV-D--ALLKELGL  200 (212)
Q Consensus       127 ~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~--~~~h~~~~~~~~-~--~~l~~g~~  200 (212)
                      +++.+|||||||||+|||||+.+|++|||||||+ ||+.++..+.++|+++...  .++|+.+.+... +  .+|++|++
T Consensus       157 ~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l~~g~i  236 (552)
T TIGR03719       157 ADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRGRG  236 (552)
T ss_pred             CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEECCEE
Confidence            8999999999999999999999999999999999 9999999999999887421  137999988764 3  36789987


Q ss_pred             e-ecCCchhhh
Q psy8250         201 L-KCRPADELN  210 (212)
Q Consensus       201 ~-~~~~~~~~~  210 (212)
                      + +.|+.+++.
T Consensus       237 ~~~~g~~~~~~  247 (552)
T TIGR03719       237 IPWEGNYSSWL  247 (552)
T ss_pred             EEecCCHHHHH
Confidence            5 678877653

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=100.00  E-value=1.5e-42  Score=279.23  Aligned_cols=172  Identities=20%  Similarity=0.276  Sum_probs=137.2

Q ss_pred             CcccccccCCc-----ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEE
Q psy8250           1 METFHPLFGDT-----NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFV   75 (212)
Q Consensus         1 ~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v   75 (212)
                      ++++++.|++.     .+|+++||+|++|++++|+||||||||||+++|+|+.+| ++|+|.++|          .++|+
T Consensus         3 ~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~-~~G~i~~~g----------~i~~~   71 (204)
T cd03250           3 VEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEK-LSGSVSVPG----------SIAYV   71 (204)
T ss_pred             EeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCC-CCCeEEEcC----------EEEEE
Confidence            46899999764     699999999999999999999999999999999999998 699999998          48999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHH-----HHHHHHHHc--CCccccCCCCCCCChHHHHHHHHHHHHhh
Q psy8250          76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR-----TVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQTII  148 (212)
Q Consensus        76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgGqrqRv~lA~al~~  148 (212)
                      +|++.++ ..|++||+.+....      .......     .+.+.+..+  ++....++++.+||+|||||++|||||+.
T Consensus        72 ~q~~~l~-~~t~~enl~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~  144 (204)
T cd03250          72 SQEPWIQ-NGTIRENILFGKPF------DEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYS  144 (204)
T ss_pred             ecCchhc-cCcHHHHhccCCCc------CHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence            9999887 46999999874221      1111111     112222222  34445667789999999999999999999


Q ss_pred             CCCeEEecCCCC-CChhhHHHHHH-HHHHHHhhc-----CcchHHHHHH
Q psy8250         149 VQSGFVPQHDLT-VDTLTVHEHMT-LMARLKMDR-----NLHHVERART  190 (212)
Q Consensus       149 ~p~llilDEPt~-lD~~~~~~~~~-~l~~l~~~~-----~~h~~~~~~~  190 (212)
                      +|+++||||||+ ||+.+++.+++ +++++..+.     .+|+.+.+..
T Consensus       145 ~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~  193 (204)
T cd03250         145 DADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH  193 (204)
T ss_pred             CCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh
Confidence            999999999999 99999999998 566664432     2699887754

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=100.00  E-value=3.6e-42  Score=270.08  Aligned_cols=148  Identities=24%  Similarity=0.385  Sum_probs=130.9

Q ss_pred             CcccccccCCc--ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250           1 METFHPLFGDT--NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV   75 (212)
Q Consensus         1 ~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v   75 (212)
                      ++++++.|++.  .+++++||++++|++++|+||||||||||+++|+|+++| .+|+|+++|.++..   ..+++.++|+
T Consensus         3 ~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~   81 (171)
T cd03228           3 FKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDP-TSGEILIDGVDLRDLDLESLRKNIAYV   81 (171)
T ss_pred             EEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC-CCCEEEECCEEhhhcCHHHHHhhEEEE
Confidence            46889999876  799999999999999999999999999999999999998 69999999998743   2345679999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEe
Q psy8250          76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVP  155 (212)
Q Consensus        76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llil  155 (212)
                      ||++.+++ .|++||+                                        ||+|||||++|||||+.+|+++||
T Consensus        82 ~~~~~~~~-~t~~e~l----------------------------------------LS~G~~~rl~la~al~~~p~llll  120 (171)
T cd03228          82 PQDPFLFS-GTIRENI----------------------------------------LSGGQRQRIAIARALLRDPPILIL  120 (171)
T ss_pred             cCCchhcc-chHHHHh----------------------------------------hCHHHHHHHHHHHHHhcCCCEEEE
Confidence            99987775 5888876                                        999999999999999999999999


Q ss_pred             cCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHH
Q psy8250         156 QHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERART  190 (212)
Q Consensus       156 DEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~  190 (212)
                      ||||+ ||+.++..+.++|+++++..    .+|+.+.+..
T Consensus       121 DEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~  160 (171)
T cd03228         121 DEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD  160 (171)
T ss_pred             ECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence            99999 99999999999999986532    2799888754

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=1.8e-41  Score=334.23  Aligned_cols=205  Identities=25%  Similarity=0.359  Sum_probs=174.5

Q ss_pred             cccccccC----CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCC---CCCceEEEECCEeCCcccccceEEE
Q psy8250           2 ETFHPLFG----DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ---GDVDGQILLNGLEVEKNLMVKVSGF   74 (212)
Q Consensus         2 ~~l~~~~~----~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~---p~~~G~I~~~g~~~~~~~~~~~i~~   74 (212)
                      +++++.|+    ++.+|+|||+++++|+++||+|||||||||||++|+|+.+   | ++|+|.+||+++.. ..++.+||
T Consensus       763 ~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~-~~G~I~i~G~~~~~-~~~~~i~y  840 (1394)
T TIGR00956       763 RNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVI-TGGDRLVNGRPLDS-SFQRSIGY  840 (1394)
T ss_pred             EeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCc-ceeEEEECCEECCh-hhhcceee
Confidence            56677774    4579999999999999999999999999999999999987   5 58999999999853 45678999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCC----CCChHHHHHHHHHHHHhhCC
Q psy8250          75 VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLN----VLSGGERKRVALAVQTIIVQ  150 (212)
Q Consensus        75 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~----~LSgGqrqRv~lA~al~~~p  150 (212)
                      |+|++.+++.+||+||+.+.+.++.....+..+..++++++++.+++.+..++.++    +||||||||++||+||+.+|
T Consensus       841 v~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P  920 (1394)
T TIGR00956       841 VQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKP  920 (1394)
T ss_pred             ecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCC
Confidence            99998889999999999998766533334455666789999999999998998887    79999999999999999999


Q ss_pred             C-eEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHH--HHHH--HHHHhc-CeeecCCchh
Q psy8250         151 S-GFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERA--RTVD--ALLKEL-GLLKCRPADE  208 (212)
Q Consensus       151 ~-llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~--~~~~--~~l~~g-~~~~~~~~~~  208 (212)
                      + +|||||||+ ||+.++..++++|++++.++     .+|+++..  ...+  .+|++| ++++.|++++
T Consensus       921 ~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~  990 (1394)
T TIGR00956       921 KLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGE  990 (1394)
T ss_pred             CeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCccc
Confidence            7 999999999 99999999999999997653     26998753  2233  468887 9999998754

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.9e-41  Score=305.37  Aligned_cols=203  Identities=14%  Similarity=0.136  Sum_probs=163.1

Q ss_pred             cccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccc----ccceEEEEcC
Q psy8250           2 ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL----MVKVSGFVPQ   77 (212)
Q Consensus         2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~----~~~~i~~v~Q   77 (212)
                      +++++.+  +.+|++|||++++||++||+||||||||||+++|+|+.+| ++|+|+++|+++....    .++.++|+||
T Consensus       254 ~~l~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q  330 (491)
T PRK10982        254 RNLTSLR--QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREK-SAGTITLHGKKINNHNANEAINHGFALVTE  330 (491)
T ss_pred             eCccccc--CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcC-CccEEEECCEECCCCCHHHHHHCCCEEcCC
Confidence            5677763  4699999999999999999999999999999999999998 6999999999885321    2455899999


Q ss_pred             CC---CCCCCCCHHHHHHHHH-h-hhcccC-CCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHHHhhCC
Q psy8250          78 HD---LTVDTLTVHEHMTLMA-R-LKMDRN-LHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQTIIVQ  150 (212)
Q Consensus        78 ~~---~~~~~ltv~e~l~~~~-~-~~~~~~-~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~al~~~p  150 (212)
                      ++   .+++++|+.+|..+.. . ...... .........+.++++.+++. +..++++.+|||||||||+|||||+.+|
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p  410 (491)
T PRK10982        331 ERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQP  410 (491)
T ss_pred             chhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCC
Confidence            85   4688888887743321 1 100001 12233455678899999995 5679999999999999999999999999


Q ss_pred             CeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHHH---HHHHhcCeeecCCch
Q psy8250         151 SGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTVD---ALLKELGLLKCRPAD  207 (212)
Q Consensus       151 ~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~~---~~l~~g~~~~~~~~~  207 (212)
                      ++|||||||+ ||+.++..++++|.+++.++     .+||++++...+   .+|++|+++..++.+
T Consensus       411 ~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~  476 (491)
T PRK10982        411 EILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTK  476 (491)
T ss_pred             CEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEccc
Confidence            9999999999 99999999999999987654     379999887642   467899998776543

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=100.00  E-value=2.2e-41  Score=288.52  Aligned_cols=208  Identities=20%  Similarity=0.276  Sum_probs=179.4

Q ss_pred             CcccccccC----CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCC----CceEEEECCEeCCc---ccc-
Q psy8250           1 METFHPLFG----DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD----VDGQILLNGLEVEK---NLM-   68 (212)
Q Consensus         1 ~~~l~~~~~----~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~----~~G~I~~~g~~~~~---~~~-   68 (212)
                      ++|+++.|+    ...++++|||++.+||.+||+|+||||||-..+.|+++++.+    .+|+|.|+|.++-.   ..+ 
T Consensus         9 v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr   88 (534)
T COG4172           9 IRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLR   88 (534)
T ss_pred             eeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHh
Confidence            468899886    567999999999999999999999999999999999998631    38999999998732   222 


Q ss_pred             ---cceEEEEcCCCC--CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc---ccCCCCCCCChHHHHHH
Q psy8250          69 ---VKVSGFVPQHDL--TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK---CKNSVLNVLSGGERKRV  140 (212)
Q Consensus        69 ---~~~i~~v~Q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~---~~~~~~~~LSgGqrqRv  140 (212)
                         -..|+++||+|.  +.|-.|+...+....+++  ++.++++.+.++.++|+.+|+.+   ..+.+|++|||||||||
T Consensus        89 ~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~H--rg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRV  166 (534)
T COG4172          89 GVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLH--RGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRV  166 (534)
T ss_pred             hhcccceEEEecccccccCcHhHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHH
Confidence               246999999985  567778888888777665  45678888999999999999964   57889999999999999


Q ss_pred             HHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHHH---HHHHhcCeeecCCchhhh
Q psy8250         141 ALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR------NLHHVERARTVD---ALLKELGLLKCRPADELN  210 (212)
Q Consensus       141 ~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~  210 (212)
                      +||+||+.+|++||.||||+ ||...+.+|+++|++++.+.      .|||+..++...   .+|.+|+++..|+.+.+-
T Consensus       167 MIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~~lF  246 (534)
T COG4172         167 MIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLF  246 (534)
T ss_pred             HHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcHHHHh
Confidence            99999999999999999999 99999999999999999875      389999998753   489999999999987763

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=100.00  E-value=2.2e-42  Score=341.35  Aligned_cols=201  Identities=16%  Similarity=0.228  Sum_probs=163.4

Q ss_pred             CcccccccC---CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCC--------------------------
Q psy8250           1 METFHPLFG---DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD--------------------------   51 (212)
Q Consensus         1 ~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~--------------------------   51 (212)
                      +++|+++|.   +.++|+|+||+|++|+++||+||||||||||+++|.|++.|.                          
T Consensus      1168 f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1247 (1466)
T PTZ00265       1168 IMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEE 1247 (1466)
T ss_pred             EEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccc
Confidence            368899995   347999999999999999999999999999999999999972                          


Q ss_pred             ---------------------------CceEEEECCEeCCc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhhhccc
Q psy8250          52 ---------------------------VDGQILLNGLEVEK---NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDR  101 (212)
Q Consensus        52 ---------------------------~~G~I~~~g~~~~~---~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~  101 (212)
                                                 ++|+|.+||.++..   ..+++.++||+|+|.+|+. |++||+.++..     
T Consensus      1248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~g-TIreNI~~g~~----- 1321 (1466)
T PTZ00265       1248 QNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNM-SIYENIKFGKE----- 1321 (1466)
T ss_pred             cccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccc-cHHHHHhcCCC-----
Confidence                                       49999999999854   4578899999999999865 99999998632     


Q ss_pred             CCCHHHHHHHHHHHHHHcC-----------CccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHH
Q psy8250         102 NLHHVERARTVDALLKELG-----------LLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEH  169 (212)
Q Consensus       102 ~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~  169 (212)
                      ..+    .+.+.++++..+           ++.........||||||||++|||||+++|+||||||||| ||+.+.+.+
T Consensus      1322 ~at----~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I 1397 (1466)
T PTZ00265       1322 DAT----REDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLI 1397 (1466)
T ss_pred             CCC----HHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHH
Confidence            111    122344444443           3444445556799999999999999999999999999999 999999999


Q ss_pred             HHHHHHHH--hhc----CcchHHHHHHHH--HHHHh----cCee-ecCCchhhhc
Q psy8250         170 MTLMARLK--MDR----NLHHVERARTVD--ALLKE----LGLL-KCRPADELNR  211 (212)
Q Consensus       170 ~~~l~~l~--~~~----~~h~~~~~~~~~--~~l~~----g~~~-~~~~~~~~~~  211 (212)
                      .+.|.++.  +..    ++|.++.++.++  .+|++    |+++ +.|+.+|+-+
T Consensus      1398 ~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265       1398 EKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred             HHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence            99999985  222    379998887765  46778    8855 7999998853

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=100.00  E-value=3e-42  Score=312.98  Aligned_cols=180  Identities=23%  Similarity=0.269  Sum_probs=148.2

Q ss_pred             CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250           1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV   75 (212)
Q Consensus         1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v   75 (212)
                      ++++++.|++  +.+|+|+||++++|+.++|+||||||||||+|+|+|+++| ++|+|.++|.++..   ..+++.++||
T Consensus       323 ~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-~~G~I~~~g~~i~~~~~~~lr~~i~~v  401 (529)
T TIGR02857       323 FSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDP-TEGSIAVNGVPLADADADSWRDQIAWV  401 (529)
T ss_pred             EEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEECCEehhhCCHHHHHhheEEE
Confidence            3688999965  3699999999999999999999999999999999999999 69999999998854   3567889999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-----------cccCCCCCCCChHHHHHHHHHH
Q psy8250          76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-----------KCKNSVLNVLSGGERKRVALAV  144 (212)
Q Consensus        76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LSgGqrqRv~lA~  144 (212)
                      +|++.+|+. |++||+.++...     .+    ++.+.++++.+++.           ........+||||||||++|||
T Consensus       402 ~Q~~~lf~~-ti~~Ni~~~~~~-----~~----~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laR  471 (529)
T TIGR02857       402 PQHPFLFAG-TIAENIRLARPD-----AS----DAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALAR  471 (529)
T ss_pred             cCCCcccCc-CHHHHHhccCCC-----CC----HHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHH
Confidence            999998875 999999875321     11    23344555555543           3334456789999999999999


Q ss_pred             HHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH
Q psy8250         145 QTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV  191 (212)
Q Consensus       145 al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~  191 (212)
                      ||+++|+++||||||+ +|+.+.+.+.+.+.++....    .+|+++.+..+
T Consensus       472 al~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~  523 (529)
T TIGR02857       472 AFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERA  523 (529)
T ss_pred             HHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhC
Confidence            9999999999999999 99999999999999986433    37998776543

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>KOG0061|consensus

Probab=100.00  E-value=1e-40  Score=306.37  Aligned_cols=201  Identities=35%  Similarity=0.559  Sum_probs=180.7

Q ss_pred             CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCC--CCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCH
Q psy8250          10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQG--DVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTV   87 (212)
Q Consensus        10 ~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p--~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv   87 (212)
                      .+++|++||.++++||++||+|||||||||||++|+|....  ..+|+|.+||++.....+++..|||.|+..+++.+||
T Consensus        42 ~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV  121 (613)
T KOG0061|consen   42 TKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTV  121 (613)
T ss_pred             cceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccH
Confidence            46799999999999999999999999999999999999864  2699999999888777788899999999999999999


Q ss_pred             HHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCC-----CCChHHHHHHHHHHHHhhCCCeEEecCCCC-C
Q psy8250          88 HEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLN-----VLSGGERKRVALAVQTIIVQSGFVPQHDLT-V  161 (212)
Q Consensus        88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGqrqRv~lA~al~~~p~llilDEPt~-l  161 (212)
                      +|++.|.+.++.+...+..+...+++++++++|+..+.|+.++     .+|||||+||+||.-|+.+|++|++||||+ |
T Consensus       122 ~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGL  201 (613)
T KOG0061|consen  122 RETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGL  201 (613)
T ss_pred             HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCc
Confidence            9999999998877666788899999999999999999999986     599999999999999999999999999999 9


Q ss_pred             ChhhHHHHHHHHHHHHhhcC-----cchHH-HHH-HHH--HHHHhcCeeecCCchhhh
Q psy8250         162 DTLTVHEHMTLMARLKMDRN-----LHHVE-RAR-TVD--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       162 D~~~~~~~~~~l~~l~~~~~-----~h~~~-~~~-~~~--~~l~~g~~~~~~~~~~~~  210 (212)
                      |..+..++.+.|+++++++.     .|+.. ++- ..+  .+|.+|++++.|+++++-
T Consensus       202 DS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~  259 (613)
T KOG0061|consen  202 DSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELL  259 (613)
T ss_pred             chhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHH
Confidence            99999999999999998742     48864 332 233  578899999999988753

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=100.00  E-value=6.2e-41  Score=271.90  Aligned_cols=182  Identities=16%  Similarity=0.151  Sum_probs=147.3

Q ss_pred             ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEE-ECCEeCCcccccceEEEEcCCCCCCCCCCHHHH
Q psy8250          12 NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQIL-LNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEH   90 (212)
Q Consensus        12 ~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~-~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~   90 (212)
                      .+|+||||+|++|++++|+||||||||||+++|+|+++| ++|+|. ++|..+          .+.+.+.+++.+|+.||
T Consensus         1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-~sG~i~~~~~~~~----------~~~~~~~l~~~ltv~en   69 (213)
T PRK15177          1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAP-DEGDFIGLRGDAL----------PLGANSFILPGLTGEEN   69 (213)
T ss_pred             CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC-CCCCEEEecCcee----------ccccccccCCcCcHHHH
Confidence            379999999999999999999999999999999999988 699997 776533          12345678889999999


Q ss_pred             HHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHH
Q psy8250          91 MTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEH  169 (212)
Q Consensus        91 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~  169 (212)
                      +.+....+.   ....+.   ...+.+.+++....++++.+||+|||||++|||||+.+|+++|||||++ +|+.++..+
T Consensus        70 l~~~~~~~~---~~~~~~---~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~  143 (213)
T PRK15177         70 ARMMASLYG---LDGDEF---SHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRM  143 (213)
T ss_pred             HHHHHHHcC---CCHHHH---HHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHH
Confidence            998665432   222221   2234456788888899999999999999999999999999999999999 999999999


Q ss_pred             HHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         170 MTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       170 ~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      .+.+.+..++.    .+|+++.+... +  .+|++|++++.++.++..
T Consensus       144 ~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  191 (213)
T PRK15177        144 QAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQAT  191 (213)
T ss_pred             HHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHH
Confidence            99876543332    37999988653 3  478899999999887764

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=100.00  E-value=1.2e-40  Score=275.80  Aligned_cols=164  Identities=18%  Similarity=0.186  Sum_probs=139.2

Q ss_pred             cceeeeeEEEEc-----CCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCC
Q psy8250          11 TNYKESLSGIAE-----SGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTL   85 (212)
Q Consensus        11 ~~~l~~vs~~i~-----~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~l   85 (212)
                      ...++++++++.     +|++++|+||||||||||+++|+|+++| ++|+|.++|.         .++|++|++..++.+
T Consensus         7 ~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p-~~G~i~~~g~---------~i~~~~q~~~~~~~~   76 (246)
T cd03237           7 KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKP-DEGDIEIELD---------TVSYKPQYIKADYEG   76 (246)
T ss_pred             ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcC-CCCeEEECCc---------eEEEecccccCCCCC
Confidence            346677777765     7999999999999999999999999998 6999999985         479999998877888


Q ss_pred             CHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChh
Q psy8250          86 TVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTL  164 (212)
Q Consensus        86 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~  164 (212)
                      |+.|++.+......    .   ....+.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||+ ||+.
T Consensus        77 tv~e~l~~~~~~~~----~---~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~  149 (246)
T cd03237          77 TVRDLLSSITKDFY----T---HPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVE  149 (246)
T ss_pred             CHHHHHHHHhhhcc----c---cHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence            99999876432110    0   12235778999999988999999999999999999999999999999999999 9999


Q ss_pred             hHHHHHHHHHHHHhh-c-----CcchHHHHHHH
Q psy8250         165 TVHEHMTLMARLKMD-R-----NLHHVERARTV  191 (212)
Q Consensus       165 ~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~  191 (212)
                      ++..+.++|++++.+ .     ++|+++.+...
T Consensus       150 ~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~  182 (246)
T cd03237         150 QRLMASKVIRRFAENNEKTAFVVEHDIIMIDYL  182 (246)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence            999999999998754 2     37999988764

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>KOG0055|consensus

Probab=100.00  E-value=4e-42  Score=325.23  Aligned_cols=209  Identities=19%  Similarity=0.291  Sum_probs=172.0

Q ss_pred             CcccccccCC---cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEE
Q psy8250           1 METFHPLFGD---TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGF   74 (212)
Q Consensus         1 ~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~   74 (212)
                      ++++++.|..   ..+|+|+||++++|+.+||||||||||||.+.+|-.++.| ++|.|.+||.++..   ..+|+++|.
T Consensus       990 ~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp-~~G~V~IDg~dik~lnl~~LR~~i~l 1068 (1228)
T KOG0055|consen  990 FRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDP-DAGKVKIDGVDIKDLNLKWLRKQIGL 1068 (1228)
T ss_pred             EeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCC-CCCeEEECCcccccCCHHHHHHhcce
Confidence            3688899964   4699999999999999999999999999999999999999 69999999999865   356889999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHc--CCccccCCCCCCCChHHHHHHHHHHHHhhCCCe
Q psy8250          75 VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQTIIVQSG  152 (212)
Q Consensus        75 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~l  152 (212)
                      |.|+|.+|.. |++||+.++..-........+.....+.+++..+  |.+.....+..+||||||||++||||++++|+|
T Consensus      1069 VsQEP~LF~~-TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkI 1147 (1228)
T KOG0055|consen 1069 VSQEPVLFNG-TIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKI 1147 (1228)
T ss_pred             eccCchhhcc-cHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCe
Confidence            9999999876 9999999982110000011122223344455544  555566666779999999999999999999999


Q ss_pred             EEecCCCC-CChhhHHHHHHHHHHHHhhcC----cchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250         153 FVPQHDLT-VDTLTVHEHMTLMARLKMDRN----LHHVERARTVD--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       153 lilDEPt~-lD~~~~~~~~~~l~~l~~~~~----~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      |||||.|| ||.++.+.+-+.|.+....++    .|.+..++.+|  .++++|++++.|+.+++-.
T Consensus      1148 LLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1148 LLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred             eeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEecccHHHHHh
Confidence            99999999 999999999999999886543    59999998875  5899999999999998753

>PLN03232 ABC transporter C family member; Provisional

Probab=100.00  E-value=4.6e-42  Score=340.85  Aligned_cols=199  Identities=18%  Similarity=0.188  Sum_probs=166.6

Q ss_pred             CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250           1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV   75 (212)
Q Consensus         1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v   75 (212)
                      +++++++|++  ..+|+|+||+|++||.+||+||||||||||+++|.|+++| ++|+|.+||.++..   ..+|++++||
T Consensus      1237 f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p-~~G~I~IdG~di~~i~~~~lR~~i~iV 1315 (1495)
T PLN03232       1237 FEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVEL-EKGRIMIDDCDVAKFGLTDLRRVLSII 1315 (1495)
T ss_pred             EEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC-CCceEEECCEEhhhCCHHHHHhhcEEE
Confidence            3688999953  4699999999999999999999999999999999999999 69999999999854   3568889999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-----------cccCCCCCCCChHHHHHHHHHH
Q psy8250          76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-----------KCKNSVLNVLSGGERKRVALAV  144 (212)
Q Consensus        76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LSgGqrqRv~lA~  144 (212)
                      ||+|.+|+. |++||+..+.      ..+    ++.+.++++..++.           ........+||||||||++|||
T Consensus      1316 pQdp~LF~g-TIr~NL~~~~------~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLAR 1384 (1495)
T PLN03232       1316 PQSPVLFSG-TVRFNIDPFS------EHN----DADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLAR 1384 (1495)
T ss_pred             CCCCeeeCc-cHHHHcCCCC------CCC----HHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHH
Confidence            999999987 9999997532      111    23455556655553           3334445689999999999999


Q ss_pred             HHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHHH--HHHhcCeeecCCchhhhc
Q psy8250         145 QTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVDA--LLKELGLLKCRPADELNR  211 (212)
Q Consensus       145 al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~~--~l~~g~~~~~~~~~~~~~  211 (212)
                      ||+++|+||||||||+ +|+.+.+.+.+.|++..+..    .+|.++.+..++.  +|++|++++.|+++++.+
T Consensus      1385 ALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232       1385 ALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred             HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            9999999999999999 99999999999999875433    2699999888764  788999999999998853

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=4.3e-41  Score=307.11  Aligned_cols=196  Identities=21%  Similarity=0.189  Sum_probs=160.6

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCC-
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHD-   79 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~-   79 (212)
                      ++++++.|+++.+|+||||+|++|++++|+||||||||||+++|+|+++| ++|+|++++ ++       .+||+||++ 
T Consensus       327 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p-~~G~i~~~~-~~-------~i~~v~q~~~  397 (556)
T PRK11819        327 AENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQP-DSGTIKIGE-TV-------KLAYVDQSRD  397 (556)
T ss_pred             EEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECC-ce-------EEEEEeCchh
Confidence            36889999888899999999999999999999999999999999999998 699999954 21       489999996 


Q ss_pred             CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-ccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250          80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD  158 (212)
Q Consensus        80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP  158 (212)
                      .+++.+|+.||+.+......   ....  ...+..+++.+++.. ..++++.+||||||||++|||||+.+|++||||||
T Consensus       398 ~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP  472 (556)
T PRK11819        398 ALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEP  472 (556)
T ss_pred             hcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            67888999999987643211   1111  123457899999964 57999999999999999999999999999999999


Q ss_pred             CC-CChhhHHHHHHHHHHHHhh--cCcchHHHHHHH-H--HHHHh-cCee-ecCCchhhh
Q psy8250         159 LT-VDTLTVHEHMTLMARLKMD--RNLHHVERARTV-D--ALLKE-LGLL-KCRPADELN  210 (212)
Q Consensus       159 t~-lD~~~~~~~~~~l~~l~~~--~~~h~~~~~~~~-~--~~l~~-g~~~-~~~~~~~~~  210 (212)
                      |+ ||+.++..++++|.++...  ..|||++.+... +  .+|++ |++. ..|+.++.-
T Consensus       473 t~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~  532 (556)
T PRK11819        473 TNDLDVETLRALEEALLEFPGCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYE  532 (556)
T ss_pred             CCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHH
Confidence            99 9999999999999987421  137999988764 3  35765 6664 577776543

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=100.00  E-value=4.3e-41  Score=262.21  Aligned_cols=147  Identities=23%  Similarity=0.312  Sum_probs=128.6

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc----cccceEEEEc
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN----LMVKVSGFVP   76 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~----~~~~~i~~v~   76 (212)
                      ++++++.|+++++++++||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...    ..++.++|+|
T Consensus         3 ~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~v~~~g~~~~~~~~~~~~~~~i~~~~   81 (163)
T cd03216           3 LRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKP-DSGEILVDGKEVSFASPRDARRAGIAMVY   81 (163)
T ss_pred             EEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEECCcCCHHHHHhcCeEEEE
Confidence            46899999888899999999999999999999999999999999999998 699999999987532    2345688888


Q ss_pred             CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250          77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ  156 (212)
Q Consensus        77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD  156 (212)
                      |                                                      ||+||+||++|||||+.+|+++|||
T Consensus        82 q------------------------------------------------------LS~G~~qrl~laral~~~p~illlD  107 (163)
T cd03216          82 Q------------------------------------------------------LSVGERQMVEIARALARNARLLILD  107 (163)
T ss_pred             e------------------------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEE
Confidence            8                                                      9999999999999999999999999


Q ss_pred             CCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeee
Q psy8250         157 HDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLK  202 (212)
Q Consensus       157 EPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~  202 (212)
                      |||+ ||+.+++.+.++|++++++.     .+|+.+.+... +  .++++|++++
T Consensus       108 EP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~  162 (163)
T cd03216         108 EPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG  162 (163)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence            9999 99999999999999997543     26999877653 3  3567777653

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PLN03130 ABC transporter C family member; Provisional

Probab=100.00  E-value=1e-41  Score=339.30  Aligned_cols=199  Identities=19%  Similarity=0.180  Sum_probs=166.7

Q ss_pred             CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250           1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV   75 (212)
Q Consensus         1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v   75 (212)
                      +++++++|.+  ..+|+||||+|++||.+||+||||||||||+++|.|++.| ++|+|.+||.++..   ..+|+++++|
T Consensus      1240 f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p-~~G~I~IDG~dI~~i~l~~LR~~IsiV 1318 (1622)
T PLN03130       1240 FEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVEL-ERGRILIDGCDISKFGLMDLRKVLGII 1318 (1622)
T ss_pred             EEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCC-CCceEEECCEecccCCHHHHHhccEEE
Confidence            3688999964  3699999999999999999999999999999999999999 69999999999864   3567889999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-----------cccCCCCCCCChHHHHHHHHHH
Q psy8250          76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-----------KCKNSVLNVLSGGERKRVALAV  144 (212)
Q Consensus        76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LSgGqrqRv~lA~  144 (212)
                      ||+|.+|.. |++||+..+..      .    .++.+.++++..++.           ........+||||||||++|||
T Consensus      1319 pQdp~LF~G-TIreNLd~~~~------~----tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLAR 1387 (1622)
T PLN03130       1319 PQAPVLFSG-TVRFNLDPFNE------H----NDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLAR 1387 (1622)
T ss_pred             CCCCccccc-cHHHHhCcCCC------C----CHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHH
Confidence            999999987 99999975321      1    123455555555543           3334445689999999999999


Q ss_pred             HHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250         145 QTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       145 al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      ||+++|+||||||||+ +|..+.+.+.+.|++..+..    .+|.++.+..++  .+|++|++++.|+++++.+
T Consensus      1388 ALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130       1388 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred             HHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            9999999999999999 99999999999999875443    269999988776  4789999999999998853

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.1e-42  Score=301.63  Aligned_cols=200  Identities=22%  Similarity=0.278  Sum_probs=171.1

Q ss_pred             CcccccccCCcc--eeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250           1 METFHPLFGDTN--YKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV   75 (212)
Q Consensus         1 ~~~l~~~~~~~~--~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v   75 (212)
                      ++|++++|.+..  +|+|+||++++||.++|+|+||||||||+.+|+|.+.| ++|+|.++|.++..   ..++..++++
T Consensus       339 ~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~-~~G~i~~~g~~~~~l~~~~~~e~i~vl  417 (573)
T COG4987         339 LRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDP-QQGSITLNGVEIASLDEQALRETISVL  417 (573)
T ss_pred             eccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCC-CCCeeeECCcChhhCChhhHHHHHhhh
Confidence            478999997654  99999999999999999999999999999999999999 69999999998853   3367789999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcccc-----------CCCCCCCChHHHHHHHHHH
Q psy8250          76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCK-----------NSVLNVLSGGERKRVALAV  144 (212)
Q Consensus        76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGqrqRv~lA~  144 (212)
                      +|.+.+|.. |+++|+.+...-         ..++.+.++++++|+.+..           +.-...|||||+||++|||
T Consensus       418 ~Qr~hlF~~-Tlr~NL~lA~~~---------AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR  487 (573)
T COG4987         418 TQRVHLFSG-TLRDNLRLANPD---------ASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALAR  487 (573)
T ss_pred             ccchHHHHH-HHHHHHhhcCCC---------CCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHH
Confidence            999999877 999999875321         2345677888888886543           3334679999999999999


Q ss_pred             HHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHHH--HHHhcCeeecCCchhhhc
Q psy8250         145 QTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVDA--LLKELGLLKCRPADELNR  211 (212)
Q Consensus       145 al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~~--~l~~g~~~~~~~~~~~~~  211 (212)
                      +|+++.+++||||||. ||+.+.+++++++.+-.+..    +||++..+...+.  +|++|+++.+|.+.++-+
T Consensus       488 ~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~  561 (573)
T COG4987         488 ALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLA  561 (573)
T ss_pred             HHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhc
Confidence            9999999999999999 99999999999998765542    4899998888775  788999999999888754

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=100.00  E-value=7.5e-41  Score=281.80  Aligned_cols=186  Identities=22%  Similarity=0.278  Sum_probs=146.2

Q ss_pred             cccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCC
Q psy8250           2 ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLT   81 (212)
Q Consensus         2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~   81 (212)
                      +++++.  ++.+|+++||+|++|++++|+||||||||||+++|+|+++| .+|+|.++|          .++|++|++.+
T Consensus        43 ~nls~~--~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p-~~G~I~i~g----------~i~yv~q~~~l  109 (282)
T cd03291          43 SNLCLV--GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEP-SEGKIKHSG----------RISFSSQFSWI  109 (282)
T ss_pred             EEEEEe--cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECC----------EEEEEeCcccc
Confidence            456653  45799999999999999999999999999999999999998 699999988          28999999988


Q ss_pred             CCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-----------ccCCCCCCCChHHHHHHHHHHHHhhCC
Q psy8250          82 VDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-----------CKNSVLNVLSGGERKRVALAVQTIIVQ  150 (212)
Q Consensus        82 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgGqrqRv~lA~al~~~p  150 (212)
                      ++. |+.||+.+....      ..    ..+.++++.+++.+           ..++.+.+||+|||||++|||||+.+|
T Consensus       110 ~~~-tv~enl~~~~~~------~~----~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p  178 (282)
T cd03291         110 MPG-TIKENIIFGVSY------DE----YRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDA  178 (282)
T ss_pred             ccc-CHHHHhhccccc------CH----HHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence            775 999999864221      00    11122333333322           234456799999999999999999999


Q ss_pred             CeEEecCCCC-CChhhHHHHHHHH-HHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250         151 SGFVPQHDLT-VDTLTVHEHMTLM-ARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       151 ~llilDEPt~-lD~~~~~~~~~~l-~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      +++||||||+ ||+.++..+++.+ .+++...    .+|+.+.+..++  .+|++|+++..|+++++.+
T Consensus       179 ~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  247 (282)
T cd03291         179 DLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQS  247 (282)
T ss_pred             CEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            9999999999 9999999998754 5565432    279998775433  3788999999999887753

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=100.00  E-value=6.5e-41  Score=305.77  Aligned_cols=195  Identities=21%  Similarity=0.181  Sum_probs=159.7

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCC-
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHD-   79 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~-   79 (212)
                      ++++++.|+++.+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|++++ ++       .+||++|++ 
T Consensus       325 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-~~G~i~~~~-~~-------~i~~v~q~~~  395 (552)
T TIGR03719       325 AENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQP-DSGTIKIGE-TV-------KLAYVDQSRD  395 (552)
T ss_pred             EeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CCeEEEECC-ce-------EEEEEeCCcc
Confidence            36889999888899999999999999999999999999999999999998 699999954 21       489999986 


Q ss_pred             CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-ccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250          80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD  158 (212)
Q Consensus        80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP  158 (212)
                      .+++.+|+.||+.++.....   ....  ...+.++++.+++.. ..++++.+|||||||||+|||||+.+|++||||||
T Consensus       396 ~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEP  470 (552)
T TIGR03719       396 ALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEP  470 (552)
T ss_pred             ccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCC
Confidence            47888999999987643211   1111  223557899999964 57899999999999999999999999999999999


Q ss_pred             CC-CChhhHHHHHHHHHHHHhh--cCcchHHHHHHH-H--HHHHh-cCee-ecCCchhh
Q psy8250         159 LT-VDTLTVHEHMTLMARLKMD--RNLHHVERARTV-D--ALLKE-LGLL-KCRPADEL  209 (212)
Q Consensus       159 t~-lD~~~~~~~~~~l~~l~~~--~~~h~~~~~~~~-~--~~l~~-g~~~-~~~~~~~~  209 (212)
                      |+ ||+.++..++++|+++...  .++||++.+... +  .+|++ |++. ..|+.++.
T Consensus       471 t~~LD~~~~~~l~~~l~~~~~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~  529 (552)
T TIGR03719       471 TNDLDVETLRALEEALLEFAGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEY  529 (552)
T ss_pred             CCCCCHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHH
Confidence            99 9999999999999998421  137999988764 3  35765 4654 56666654

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=1.6e-40  Score=327.38  Aligned_cols=199  Identities=24%  Similarity=0.365  Sum_probs=168.2

Q ss_pred             CCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCC-CCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCH
Q psy8250           9 GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQG-DVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTV   87 (212)
Q Consensus         9 ~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p-~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv   87 (212)
                      +.+.+|+|||+++++|++++|+|||||||||||++|+|...+ ..+|+|.++|.+......++.+||++|++.+++.+||
T Consensus       891 ~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV  970 (1470)
T PLN03140        891 DRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTV  970 (1470)
T ss_pred             CCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcH
Confidence            455799999999999999999999999999999999998753 1589999999887544456679999999999999999


Q ss_pred             HHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCC-----CCCChHHHHHHHHHHHHhhCCCeEEecCCCC-C
Q psy8250          88 HEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVL-----NVLSGGERKRVALAVQTIIVQSGFVPQHDLT-V  161 (212)
Q Consensus        88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGqrqRv~lA~al~~~p~llilDEPt~-l  161 (212)
                      +||+.+.+.++.....+..+..+.++++++.+++.+..++.+     ..|||||||||+||++|+.+|++|||||||+ |
T Consensus       971 ~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgL 1050 (1470)
T PLN03140        971 RESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1050 (1470)
T ss_pred             HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Confidence            999999876543323344555677999999999998888886     5899999999999999999999999999999 9


Q ss_pred             ChhhHHHHHHHHHHHHhhc-----CcchHHH-HHH-HH--HHHHh-cCeeecCCch
Q psy8250         162 DTLTVHEHMTLMARLKMDR-----NLHHVER-ART-VD--ALLKE-LGLLKCRPAD  207 (212)
Q Consensus       162 D~~~~~~~~~~l~~l~~~~-----~~h~~~~-~~~-~~--~~l~~-g~~~~~~~~~  207 (212)
                      |+.++..++++|+++++++     .+|+.+. +.. .+  .+|++ |++++.|+++
T Consensus      1051 D~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~ 1106 (1470)
T PLN03140       1051 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLG 1106 (1470)
T ss_pred             CHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcc
Confidence            9999999999999998764     2699863 333 33  46776 8999999864

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=100.00  E-value=1.5e-40  Score=259.91  Aligned_cols=146  Identities=23%  Similarity=0.217  Sum_probs=127.3

Q ss_pred             CcccccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCC
Q psy8250           1 METFHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHD   79 (212)
Q Consensus         1 ~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~   79 (212)
                      ++++++.|+ ++.+|+++||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.        +.++|++|++
T Consensus         3 ~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~~~--------~~i~~~~q~~   73 (166)
T cd03223           3 LENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPW-GSGRIGMPEG--------EDLLFLPQRP   73 (166)
T ss_pred             EEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCC--------ceEEEECCCC
Confidence            468899995 46799999999999999999999999999999999999998 6999999873        4689999998


Q ss_pred             CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCC
Q psy8250          80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDL  159 (212)
Q Consensus        80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt  159 (212)
                      .++ ..|+.||+.+.                                 ++.+||||||||++|||||+.+|+++||||||
T Consensus        74 ~~~-~~tv~~nl~~~---------------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt  119 (166)
T cd03223          74 YLP-LGTLREQLIYP---------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEAT  119 (166)
T ss_pred             ccc-cccHHHHhhcc---------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence            765 57999998642                                 35799999999999999999999999999999


Q ss_pred             C-CChhhHHHHHHHHHHHHhh--cCcchHHHHH
Q psy8250         160 T-VDTLTVHEHMTLMARLKMD--RNLHHVERAR  189 (212)
Q Consensus       160 ~-lD~~~~~~~~~~l~~l~~~--~~~h~~~~~~  189 (212)
                      + ||+.+++.+.++|+++...  ..+|+.+...
T Consensus       120 ~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~~~  152 (166)
T cd03223         120 SALDEESEDRLYQLLKELGITVISVGHRPSLWK  152 (166)
T ss_pred             cccCHHHHHHHHHHHHHhCCEEEEEeCChhHHh
Confidence            9 9999999999999987321  1379987543

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=7.6e-41  Score=264.88  Aligned_cols=203  Identities=25%  Similarity=0.322  Sum_probs=167.3

Q ss_pred             cccccccC-----CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccc---cceEE
Q psy8250           2 ETFHPLFG-----DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLM---VKVSG   73 (212)
Q Consensus         2 ~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~---~~~i~   73 (212)
                      .+..+.|.     .+++|+++|++|.+|+++.|+|.||||||||+++|+|-+.| ++|+|.++|.+++....   ...++
T Consensus         5 ~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~-t~G~I~Idg~dVtk~~~~~RA~~la   83 (263)
T COG1101           5 SNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKP-TSGQILIDGVDVTKKSVAKRANLLA   83 (263)
T ss_pred             ccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCcccc-CCceEEECceecccCCHHHHhhHHH
Confidence            34555553     35799999999999999999999999999999999999999 69999999999976543   33467


Q ss_pred             EEcCCC--CCCCCCCHHHHHHHHHhhhcccCCCHH---HHHHHHHHHHHHc--CCccccCCCCCCCChHHHHHHHHHHHH
Q psy8250          74 FVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHV---ERARTVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQT  146 (212)
Q Consensus        74 ~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~---~~~~~~~~~l~~~--gl~~~~~~~~~~LSgGqrqRv~lA~al  146 (212)
                      -|||+|  ..++.+|+.||+.++......++++..   ...+...+-++.+  |+++.++.+++-|||||||-+++++|.
T Consensus        84 rVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAt  163 (263)
T COG1101          84 RVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMAT  163 (263)
T ss_pred             HHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHh
Confidence            899998  468999999999987654333333332   2233344555665  568899999999999999999999999


Q ss_pred             hhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHH---HHHHHhcCeeecCC
Q psy8250         147 IIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR------NLHHVERARTV---DALLKELGLLKCRP  205 (212)
Q Consensus       147 ~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~---~~~l~~g~~~~~~~  205 (212)
                      ++.|++|+|||-|+ |||.....++++-.++.+++      +||+++.|..+   ..+||+|+|+.+-.
T Consensus       164 l~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~  232 (263)
T COG1101         164 LHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVT  232 (263)
T ss_pred             cCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEcc
Confidence            99999999999999 99999999999999987764      48999999776   34899999987754

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=100.00  E-value=3.7e-41  Score=334.76  Aligned_cols=199  Identities=17%  Similarity=0.166  Sum_probs=166.2

Q ss_pred             CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250           1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV   75 (212)
Q Consensus         1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v   75 (212)
                      +++++++|..  ..+|+||||+|++||.+||+|+||||||||+++|.|++.| ++|+|.+||.++..   ..+|+++++|
T Consensus      1287 f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~-~~G~I~IdG~dI~~i~~~~LR~~i~iV 1365 (1522)
T TIGR00957      1287 FRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINES-AEGEIIIDGLNIAKIGLHDLRFKITII 1365 (1522)
T ss_pred             EEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccC-CCCeEEECCEEccccCHHHHHhcCeEE
Confidence            3688999964  4699999999999999999999999999999999999999 69999999999864   3568889999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-----------cccCCCCCCCChHHHHHHHHHH
Q psy8250          76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-----------KCKNSVLNVLSGGERKRVALAV  144 (212)
Q Consensus        76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LSgGqrqRv~lA~  144 (212)
                      ||+|.+|+. |+++|+....      ..+    ++.+.++++.+++.           .........||||||||++|||
T Consensus      1366 pQdp~LF~g-TIr~NLdp~~------~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LAR 1434 (1522)
T TIGR00957      1366 PQDPVLFSG-SLRMNLDPFS------QYS----DEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLAR 1434 (1522)
T ss_pred             CCCCcccCc-cHHHHcCccc------CCC----HHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHH
Confidence            999999987 9999996321      111    23355566665553           3333444679999999999999


Q ss_pred             HHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHHH--HHHhcCeeecCCchhhhc
Q psy8250         145 QTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVDA--LLKELGLLKCRPADELNR  211 (212)
Q Consensus       145 al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~~--~l~~g~~~~~~~~~~~~~  211 (212)
                      ||+++|+||||||||+ +|+.+...+.+.|++..+..    .+|.++.+..++.  +|++|++++.|+++++.+
T Consensus      1435 ALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957      1435 ALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred             HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            9999999999999999 99999999999998875443    3699999888764  788999999999999754

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PRK13409 putative ATPase RIL; Provisional

Probab=100.00  E-value=4e-40  Score=301.66  Aligned_cols=184  Identities=20%  Similarity=0.190  Sum_probs=156.1

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL   80 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~   80 (212)
                      ++++++.|++. .|+++||+|.+||+++|+||||||||||+++|+|+++| ++|+|.++   +       .++|+||++.
T Consensus       343 ~~~ls~~~~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p-~~G~I~~~---~-------~i~y~~Q~~~  410 (590)
T PRK13409        343 YPDLTKKLGDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKP-DEGEVDPE---L-------KISYKPQYIK  410 (590)
T ss_pred             EcceEEEECCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEEe---e-------eEEEeccccc
Confidence            36788889775 59999999999999999999999999999999999998 69999986   1       4899999988


Q ss_pred             CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC
Q psy8250          81 TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT  160 (212)
Q Consensus        81 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~  160 (212)
                      +++.+||.+|+.+.....     .   ....+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+
T Consensus       411 ~~~~~tv~e~l~~~~~~~-----~---~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~  482 (590)
T PRK13409        411 PDYDGTVEDLLRSITDDL-----G---SSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSA  482 (590)
T ss_pred             CCCCCcHHHHHHHHhhhc-----C---hHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence            888999999998753211     1   12246789999999988999999999999999999999999999999999999


Q ss_pred             -CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-HH--HHHhcCeeecCC
Q psy8250         161 -VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-DA--LLKELGLLKCRP  205 (212)
Q Consensus       161 -lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~~--~l~~g~~~~~~~  205 (212)
                       ||+.++..+.++|++++.+ .     .+||++++... +.  ++ +|++...|+
T Consensus       483 ~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl-~~~~~~~g~  536 (590)
T PRK13409        483 HLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVF-EGEPGKHGH  536 (590)
T ss_pred             CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-cCcceeeee
Confidence             9999999999999999764 2     37999988764 32  44 556665553

>PTZ00243 ABC transporter; Provisional

Probab=100.00  E-value=7.7e-41  Score=332.42  Aligned_cols=198  Identities=17%  Similarity=0.180  Sum_probs=166.5

Q ss_pred             CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250           1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV   75 (212)
Q Consensus         1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v   75 (212)
                      +++++++|.+  ..+|+||||+|++||.+||+|+||||||||+++|.|++.| ++|+|.+||.++..   ..+++.++||
T Consensus      1311 f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p-~~G~I~IDG~di~~i~l~~LR~~I~iV 1389 (1560)
T PTZ00243       1311 FEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEV-CGGEIRVNGREIGAYGLRELRRQFSMI 1389 (1560)
T ss_pred             EEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEEcccCCHHHHHhcceEE
Confidence            3688999954  3599999999999999999999999999999999999999 69999999999864   3578899999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcccc-----------CCCCCCCChHHHHHHHHHH
Q psy8250          76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCK-----------NSVLNVLSGGERKRVALAV  144 (212)
Q Consensus        76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGqrqRv~lA~  144 (212)
                      ||+|.+|+. |+++||....      ..    .++.+.++++.+++.+..           .....+||||||||++|||
T Consensus      1390 pQdp~LF~g-TIreNIdp~~------~~----sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLAR 1458 (1560)
T PTZ00243       1390 PQDPVLFDG-TVRQNVDPFL------EA----SSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMAR 1458 (1560)
T ss_pred             CCCCccccc-cHHHHhCccc------CC----CHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHH
Confidence            999999887 9999996421      11    134567777777765432           2334579999999999999


Q ss_pred             HHhhC-CCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHHH--HHHhcCeeecCCchhhh
Q psy8250         145 QTIIV-QSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVDA--LLKELGLLKCRPADELN  210 (212)
Q Consensus       145 al~~~-p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~~--~l~~g~~~~~~~~~~~~  210 (212)
                      ||+++ |++|||||||+ +|+.+.+.+.+.|++..+..    ++|.++.+..++.  +|++|++++.|+++++.
T Consensus      1459 ALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl 1532 (1560)
T PTZ00243       1459 ALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELV 1532 (1560)
T ss_pred             HHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            99996 89999999999 99999999999998875433    3699998887764  78899999999999985

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=1e-40  Score=272.13  Aligned_cols=199  Identities=19%  Similarity=0.200  Sum_probs=169.7

Q ss_pred             CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc--ccccceEEEEc-CCCCCCCCCC
Q psy8250          10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK--NLMVKVSGFVP-QHDLTVDTLT   86 (212)
Q Consensus        10 ~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~--~~~~~~i~~v~-Q~~~~~~~lt   86 (212)
                      ...+++||||+|++|+++|++|||||||||+||+++|++.| ++|.|.++|.+...  ...-+.+++|+ |...++..+.
T Consensus        36 ~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p-~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp  114 (325)
T COG4586          36 SIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLP-TSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLP  114 (325)
T ss_pred             hhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCcccc-CCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeech
Confidence            34589999999999999999999999999999999999999 69999999987643  23345567664 5556666667


Q ss_pred             HHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhh
Q psy8250          87 VHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLT  165 (212)
Q Consensus        87 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~  165 (212)
                      +.+.+.....++   .++.++-.++...+.+.++++...+.+++.||.|||.|+.||.||+++|++|+|||||- ||..+
T Consensus       115 ~~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~a  191 (325)
T COG4586         115 ALDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNA  191 (325)
T ss_pred             hhhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhH
Confidence            777776655444   35667778889999999999999999999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHHhhc------CcchHHHHHHHH---HHHHhcCeeecCCchhhhcC
Q psy8250         166 VHEHMTLMARLKMDR------NLHHVERARTVD---ALLKELGLLKCRPADELNRQ  212 (212)
Q Consensus       166 ~~~~~~~l~~l~~~~------~~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~~~  212 (212)
                      +..+.+.++++.++.      .||++..+.+.+   ..|+.|+++++|+.+.+.+|
T Consensus       192 q~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~  247 (325)
T COG4586         192 QANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQ  247 (325)
T ss_pred             HHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHH
Confidence            999999999998764      379998887753   47889999999999988764

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=1.8e-40  Score=249.85  Aligned_cols=185  Identities=20%  Similarity=0.292  Sum_probs=160.4

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCC--CceEEEECCEeCCcc-cccceEEEEcC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD--VDGQILLNGLEVEKN-LMVKVSGFVPQ   77 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~--~~G~I~~~g~~~~~~-~~~~~i~~v~Q   77 (212)
                      +++++...++..+|-++||+|.+||++-|+||||||||||+..+.|.+.+.  .+|++++++++++.. ..++++|++||
T Consensus         5 l~nvsl~l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQ   84 (213)
T COG4136           5 LKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQ   84 (213)
T ss_pred             eeeeeecCCCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeec
Confidence            468888889999999999999999999999999999999999999998763  489999999998653 45788999999


Q ss_pred             CCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecC
Q psy8250          78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQH  157 (212)
Q Consensus        78 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDE  157 (212)
                      ++.+||.++|.+|+.|....    .+....++..+..+|++.|++...++.|.+||||||-||++-|+|+..|+.++|||
T Consensus        85 D~lLFphlsVg~Nl~fAlp~----~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDE  160 (213)
T COG4136          85 DALLFPHLSVGQNLLFALPA----TLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDE  160 (213)
T ss_pred             ccccccccccccceEEecCc----ccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCC
Confidence            99999999999999885432    12233566778899999999999999999999999999999999999999999999


Q ss_pred             CCC-CChhhHHHHHHHHHHH-Hhh-----cCcchHHHHH
Q psy8250         158 DLT-VDTLTVHEHMTLMARL-KMD-----RNLHHVERAR  189 (212)
Q Consensus       158 Pt~-lD~~~~~~~~~~l~~l-~~~-----~~~h~~~~~~  189 (212)
                      |+| ||..-+.++.++.-.- +..     .+|||.+.+.
T Consensus       161 PFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp  199 (213)
T COG4136         161 PFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP  199 (213)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC
Confidence            999 9999999998886543 332     2489987664

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=7e-40  Score=254.05  Aligned_cols=206  Identities=21%  Similarity=0.291  Sum_probs=173.0

Q ss_pred             cccccccCC---------cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---ccc
Q psy8250           2 ETFHPLFGD---------TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMV   69 (212)
Q Consensus         2 ~~l~~~~~~---------~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~   69 (212)
                      ++++|.|.+         ..+++.|||++++|+.+||||.||||||||.|+|+|+++| ++|+|.+||+++.-.   .+.
T Consensus         8 ~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~P-TsG~il~n~~~L~~~Dy~~R~   86 (267)
T COG4167           8 RNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP-TSGEILINDHPLHFGDYSFRS   86 (267)
T ss_pred             hhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCC-CCceEEECCccccccchHhhh
Confidence            577777743         2489999999999999999999999999999999999999 799999999988432   345


Q ss_pred             ceEEEEcCCCC--CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCC-ccccCCCCCCCChHHHHHHHHHHHH
Q psy8250          70 KVSGFVPQHDL--TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGL-LKCKNSVLNVLSGGERKRVALAVQT  146 (212)
Q Consensus        70 ~~i~~v~Q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-~~~~~~~~~~LSgGqrqRv~lA~al  146 (212)
                      ++|-++||+|.  +.|.+.+..-+..+.++.  ..+....+.+++.+-|..+|+ .+..+-++..||.||||||++||||
T Consensus        87 k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~--T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARAL  164 (267)
T COG4167          87 KRIRMIFQDPNTSLNPRLRIGQILDFPLRLN--TDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARAL  164 (267)
T ss_pred             hheeeeecCCccccChhhhhhhHhcchhhhc--ccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHH
Confidence            78999999985  456666666666665543  345566777889999999998 4578899999999999999999999


Q ss_pred             hhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhcC------cchHHHHHHH---HHHHHhcCeeecCCchhhh
Q psy8250         147 IIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDRN------LHHVERARTV---DALLKELGLLKCRPADELN  210 (212)
Q Consensus       147 ~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~~------~h~~~~~~~~---~~~l~~g~~~~~~~~~~~~  210 (212)
                      +.+|+++|.||... ||...+.++.+++.+++++.+      +.|+..++-.   ..+|++|++++.|++.++-
T Consensus       165 IL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~  238 (267)
T COG4167         165 ILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVL  238 (267)
T ss_pred             hcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhh
Confidence            99999999999999 999999999999999988754      4666655433   3589999999999988763

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=100.00  E-value=5.8e-40  Score=272.87  Aligned_cols=191  Identities=19%  Similarity=0.210  Sum_probs=156.0

Q ss_pred             cccccccCCc-ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEE-----------ECCEeCCcc--c
Q psy8250           2 ETFHPLFGDT-NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQIL-----------LNGLEVEKN--L   67 (212)
Q Consensus         2 ~~l~~~~~~~-~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~-----------~~g~~~~~~--~   67 (212)
                      .+++++|+++ .+++|+|+ +.+|++++|+||||||||||+++|+|+++| ++|+|+           ++|.++...  .
T Consensus         4 ~~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p-~~G~I~~~~~~~~~~~~~~g~~~~~~~~~   81 (255)
T cd03236           4 DEPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKP-NLGKFDDPPDWDEILDEFRGSELQNYFTK   81 (255)
T ss_pred             cCcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCC-CCceEeeccccchhhhhccCchhhhhhHH
Confidence            3689999765 59999995 999999999999999999999999999999 699996           778776432  1


Q ss_pred             -cc--ceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHH
Q psy8250          68 -MV--KVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAV  144 (212)
Q Consensus        68 -~~--~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~  144 (212)
                       .+  ..++|++|...+++. ++.+++.+...        .......+.++++.+|+.+..++.+.+||+|||||++|||
T Consensus        82 ~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l~--------~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lar  152 (255)
T cd03236          82 LLEGDVKVIVKPQYVDLIPK-AVKGKVGELLK--------KKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAA  152 (255)
T ss_pred             hhhcccceeeecchhccCch-HHHHHHHHHhc--------hhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHH
Confidence             11  237899998877774 78888765321        1223456789999999998889999999999999999999


Q ss_pred             HHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-HH--HHHhcCeeecC
Q psy8250         145 QTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-DA--LLKELGLLKCR  204 (212)
Q Consensus       145 al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~~--~l~~g~~~~~~  204 (212)
                      ||+.+|+++||||||+ ||+.++..+.++|++++++.     .+|+++.+... +.  +| +|++.++|
T Consensus       153 al~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l-~~~~~~~~  220 (255)
T cd03236         153 ALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCL-YGEPGAYG  220 (255)
T ss_pred             HHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE-CCCCCcce
Confidence            9999999999999999 99999999999999997653     27999988753 32  34 66666544

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.9e-40  Score=303.56  Aligned_cols=191  Identities=19%  Similarity=0.221  Sum_probs=158.6

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCC-
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHD-   79 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~-   79 (212)
                      ++++++.|+++.+|+|+||+|.+|+++||+||||||||||+++|+|+++| ++|+|.+++.        ..+||++|++ 
T Consensus       315 ~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p-~~G~i~~~~~--------~~igy~~Q~~~  385 (638)
T PRK10636        315 MEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAP-VSGEIGLAKG--------IKLGYFAQHQL  385 (638)
T ss_pred             EEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCeEEECCC--------EEEEEecCcch
Confidence            36889999988899999999999999999999999999999999999998 6999999742        2489999974 


Q ss_pred             -CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecC
Q psy8250          80 -LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQH  157 (212)
Q Consensus        80 -~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDE  157 (212)
                       .+.+..|+.+++..   ..      .......+.++++.+++. ...++++.+|||||||||+|||+|+.+|++|||||
T Consensus       386 ~~l~~~~~~~~~~~~---~~------~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDE  456 (638)
T PRK10636        386 EFLRADESPLQHLAR---LA------PQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDE  456 (638)
T ss_pred             hhCCccchHHHHHHH---hC------chhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence             34556677776531   11      112245678999999996 46889999999999999999999999999999999


Q ss_pred             CCC-CChhhHHHHHHHHHHHHhh--cCcchHHHHHHHH---HHHHhcCee-ecCCchhh
Q psy8250         158 DLT-VDTLTVHEHMTLMARLKMD--RNLHHVERARTVD---ALLKELGLL-KCRPADEL  209 (212)
Q Consensus       158 Pt~-lD~~~~~~~~~~l~~l~~~--~~~h~~~~~~~~~---~~l~~g~~~-~~~~~~~~  209 (212)
                      ||+ ||+.++..+.++|.++...  .++||.+++...+   .+|++|+++ +.|+.++.
T Consensus       457 Pt~~LD~~~~~~l~~~L~~~~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  515 (638)
T PRK10636        457 PTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDY  515 (638)
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHH
Confidence            999 9999999999999988321  1379999887643   467899986 78888776

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=100.00  E-value=4.5e-40  Score=299.94  Aligned_cols=188  Identities=19%  Similarity=0.139  Sum_probs=153.2

Q ss_pred             CcccccccCC-cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEc
Q psy8250           1 METFHPLFGD-TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVP   76 (212)
Q Consensus         1 ~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~   76 (212)
                      +++++++|++ ..+|+|+||++++|+.++|+||||||||||+++|+|+++| ++|+|.++|.++..   ..+++.++|++
T Consensus       325 ~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~v~  403 (547)
T PRK10522        325 LRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQP-QSGEILLDGKPVTAEQPEDYRKLFSAVF  403 (547)
T ss_pred             EEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEECCCCCHHHHhhheEEEe
Confidence            3688999964 5699999999999999999999999999999999999999 69999999999864   24677899999


Q ss_pred             CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCC-----CCCCChHHHHHHHHHHHHhhCCC
Q psy8250          77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSV-----LNVLSGGERKRVALAVQTIIVQS  151 (212)
Q Consensus        77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGqrqRv~lA~al~~~p~  151 (212)
                      |++.+|+. |+++|   .      .    ....+.+.++++.+++.......     ..+||||||||++||||++.+|+
T Consensus       404 q~~~lf~~-ti~~n---~------~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~  469 (547)
T PRK10522        404 TDFHLFDQ-LLGPE---G------K----PANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERD  469 (547)
T ss_pred             cChhHHHH-hhccc---c------C----chHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence            99988765 77776   0      0    12234567888999886543221     35899999999999999999999


Q ss_pred             eEEecCCCC-CChhhHHHHHHHHHHHHh-hc-----CcchHHHHHHHH--HHHHhcCeeec
Q psy8250         152 GFVPQHDLT-VDTLTVHEHMTLMARLKM-DR-----NLHHVERARTVD--ALLKELGLLKC  203 (212)
Q Consensus       152 llilDEPt~-lD~~~~~~~~~~l~~l~~-~~-----~~h~~~~~~~~~--~~l~~g~~~~~  203 (212)
                      ++||||||+ ||+.+.+.+.+.+.+... ..     .+|+++.+..++  .++++|+++..
T Consensus       470 ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~  530 (547)
T PRK10522        470 ILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL  530 (547)
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEe
Confidence            999999999 999999999988876532 22     279987766554  36779988765

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=2.5e-39  Score=319.09  Aligned_cols=200  Identities=25%  Similarity=0.322  Sum_probs=165.4

Q ss_pred             CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCC----CCCCceEEEECCEeCCcc--cccceEEEEcCCCCCCC
Q psy8250          10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRI----QGDVDGQILLNGLEVEKN--LMVKVSGFVPQHDLTVD   83 (212)
Q Consensus        10 ~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~----~p~~~G~I~~~g~~~~~~--~~~~~i~~v~Q~~~~~~   83 (212)
                      .+.+|+|||+++++||+++|+||||||||||||+|+|+.    .| .+|+|.++|.++...  ..++.++|++|++.+++
T Consensus        73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~-~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~  151 (1394)
T TIGR00956        73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIG-VEGVITYDGITPEEIKKHYRGDVVYNAETDVHFP  151 (1394)
T ss_pred             cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCC-ceeEEEECCEehHHHHhhcCceeEEeccccccCC
Confidence            356999999999999999999999999999999999986    35 699999999987432  34566999999999999


Q ss_pred             CCCHHHHHHHHHhhhccc----CCCHHHHHHH-HHHHHHHcCCccccCCC-----CCCCChHHHHHHHHHHHHhhCCCeE
Q psy8250          84 TLTVHEHMTLMARLKMDR----NLHHVERART-VDALLKELGLLKCKNSV-----LNVLSGGERKRVALAVQTIIVQSGF  153 (212)
Q Consensus        84 ~ltv~e~l~~~~~~~~~~----~~~~~~~~~~-~~~~l~~~gl~~~~~~~-----~~~LSgGqrqRv~lA~al~~~p~ll  153 (212)
                      .+||+|++.|.+.++...    ....++..++ ++.+++.+||.+..+++     +..|||||||||+||+||+.+|+++
T Consensus       152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl  231 (1394)
T TIGR00956       152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ  231 (1394)
T ss_pred             CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence            999999999987654211    1233333333 46789999998877665     4679999999999999999999999


Q ss_pred             EecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchH-HHHHH-HH--HHHHhcCeeecCCchhhh
Q psy8250         154 VPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHV-ERART-VD--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       154 ilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~-~~~~~-~~--~~l~~g~~~~~~~~~~~~  210 (212)
                      +|||||+ ||+.++..+++.|++++++ +     .+|+. +.+.. .+  .+|++|++++.|+++++.
T Consensus       232 llDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~  299 (1394)
T TIGR00956       232 CWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAK  299 (1394)
T ss_pred             EEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHH
Confidence            9999999 9999999999999999864 2     25885 55544 33  478899999999998864

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.4e-40  Score=302.20  Aligned_cols=198  Identities=17%  Similarity=0.147  Sum_probs=154.1

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL   80 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~   80 (212)
                      ++++++.|+++.+|+||||+|.+|+++||+||||||||||||+|+|++.| ++|+|.++|..        .++|++|++.
T Consensus         4 i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~p-d~G~I~~~~~~--------~i~~~~q~~~   74 (638)
T PRK10636          4 FSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISA-DGGSYTFPGNW--------QLAWVNQETP   74 (638)
T ss_pred             EEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEecCCC--------EEEEEecCCC
Confidence            47899999999999999999999999999999999999999999999988 69999998742        3788888643


Q ss_pred             CCCCCCHHHHHHHHHh-----------------------hhc-ccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChH
Q psy8250          81 TVDTLTVHEHMTLMAR-----------------------LKM-DRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGG  135 (212)
Q Consensus        81 ~~~~ltv~e~l~~~~~-----------------------~~~-~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG  135 (212)
                      .+ ..++.+++.-...                       +.. ...........++.++++.+|+. +..++++.+||||
T Consensus        75 ~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgG  153 (638)
T PRK10636         75 AL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGG  153 (638)
T ss_pred             CC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHH
Confidence            33 2466555432100                       000 00000012345688899999997 5789999999999


Q ss_pred             HHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh--cCcchHHHHHHHH---HHHHhcCee-ecCCchh
Q psy8250         136 ERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD--RNLHHVERARTVD---ALLKELGLL-KCRPADE  208 (212)
Q Consensus       136 qrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~--~~~h~~~~~~~~~---~~l~~g~~~-~~~~~~~  208 (212)
                      |||||+||+||+.+|++|||||||+ ||+.+...+.++|.++...  .++||.+++..++   .+|++|++. +.|+.+.
T Consensus       154 erqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~  233 (638)
T PRK10636        154 WRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSS  233 (638)
T ss_pred             HHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCCHHH
Confidence            9999999999999999999999999 9999999999999887321  1379999887643   467899885 4565443

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=100.00  E-value=4.7e-40  Score=324.91  Aligned_cols=196  Identities=17%  Similarity=0.229  Sum_probs=155.0

Q ss_pred             CcccccccCC---cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEE-CCEeCCc---ccccceEE
Q psy8250           1 METFHPLFGD---TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILL-NGLEVEK---NLMVKVSG   73 (212)
Q Consensus         1 ~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~-~g~~~~~---~~~~~~i~   73 (212)
                      ++++++.|+.   ..+|+|+||+|++|+++||+||||||||||+++|+|++.| ++|+|++ +|.++..   ..+++.+|
T Consensus       385 ~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p-~~G~I~i~~g~~i~~~~~~~lr~~Ig  463 (1466)
T PTZ00265        385 FKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDP-TEGDIIINDSHNLKDINLKWWRSKIG  463 (1466)
T ss_pred             EEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccC-CCCeEEEeCCcchhhCCHHHHHHhcc
Confidence            3688999974   3699999999999999999999999999999999999999 6999999 5677643   34567899


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHhhhc---------cc------------------------------CC---------CH
Q psy8250          74 FVPQHDLTVDTLTVHEHMTLMARLKM---------DR------------------------------NL---------HH  105 (212)
Q Consensus        74 ~v~Q~~~~~~~ltv~e~l~~~~~~~~---------~~------------------------------~~---------~~  105 (212)
                      ||+|++.+|+. |++||+.++.....         ..                              ..         ..
T Consensus       464 ~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  542 (1466)
T PTZ00265        464 VVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQ  542 (1466)
T ss_pred             Eecccccchhc-cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccc
Confidence            99999999875 99999998531000         00                              00         00


Q ss_pred             HHHHHHHHHHHHHcCCccc-----------cCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHH
Q psy8250         106 VERARTVDALLKELGLLKC-----------KNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLM  173 (212)
Q Consensus       106 ~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l  173 (212)
                      ....+.+.++++.+++.+.           ....+.+||||||||++|||||+++|++|||||||+ ||+.+...+.+.|
T Consensus       543 ~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L  622 (1466)
T PTZ00265        543 TIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTI  622 (1466)
T ss_pred             cCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHH
Confidence            0122456777777776543           346678999999999999999999999999999999 9999999999999


Q ss_pred             HHHHhh-c-----CcchHHHHHHHH--HHHHhc
Q psy8250         174 ARLKMD-R-----NLHHVERARTVD--ALLKEL  198 (212)
Q Consensus       174 ~~l~~~-~-----~~h~~~~~~~~~--~~l~~g  198 (212)
                      ++++.+ .     .+|+++.+..++  .+|++|
T Consensus       623 ~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g  655 (1466)
T PTZ00265        623 NNLKGNENRITIIIAHRLSTIRYANTIFVLSNR  655 (1466)
T ss_pred             HHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCC
Confidence            999742 2     379998876544  367665

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=100.00  E-value=7.3e-40  Score=299.03  Aligned_cols=188  Identities=17%  Similarity=0.113  Sum_probs=152.7

Q ss_pred             cccccccCCc-----ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEE
Q psy8250           2 ETFHPLFGDT-----NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSG   73 (212)
Q Consensus         2 ~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~   73 (212)
                      +++++.|++.     .+|+|+||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++..   ..+++.++
T Consensus       341 ~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p-~~G~i~~~g~~i~~~~~~~~~~~i~  419 (555)
T TIGR01194       341 KDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIP-QEGEILLDGAAVSADSRDDYRDLFS  419 (555)
T ss_pred             EEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEECCCCCHHHHHhhCc
Confidence            6788999752     599999999999999999999999999999999999999 69999999999864   24567899


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCC------CCCCChHHHHHHHHHHHHh
Q psy8250          74 FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSV------LNVLSGGERKRVALAVQTI  147 (212)
Q Consensus        74 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~------~~~LSgGqrqRv~lA~al~  147 (212)
                      |++|++.+|.. |+++|..        .    ....+.+.++++.+++.+..+..      ...||||||||++||||++
T Consensus       420 ~v~q~~~lf~~-ti~~n~~--------~----~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall  486 (555)
T TIGR01194       420 AIFADFHLFDD-LIGPDEG--------E----HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWL  486 (555)
T ss_pred             EEccChhhhhh-hhhcccc--------c----chhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHH
Confidence            99999988866 7777731        0    12344577889999987654433      3579999999999999999


Q ss_pred             hCCCeEEecCCCC-CChhhHHHHHHHH-HHHHhh-c----CcchHHHHHHHH--HHHHhcCeeec
Q psy8250         148 IVQSGFVPQHDLT-VDTLTVHEHMTLM-ARLKMD-R----NLHHVERARTVD--ALLKELGLLKC  203 (212)
Q Consensus       148 ~~p~llilDEPt~-lD~~~~~~~~~~l-~~l~~~-~----~~h~~~~~~~~~--~~l~~g~~~~~  203 (212)
                      .+|+++||||||+ ||+.+.+.+.+.+ +.++.. .    .+|+++....++  .+|++|+++++
T Consensus       487 ~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~  551 (555)
T TIGR01194       487 EDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD  551 (555)
T ss_pred             cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence            9999999999999 9999999998765 445432 2    279988766554  36778887643

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=100.00  E-value=1.5e-39  Score=301.01  Aligned_cols=188  Identities=21%  Similarity=0.253  Sum_probs=155.6

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCC-
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHD-   79 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~-   79 (212)
                      ++++++.|+++.+|+++||+|.+|+++||+|||||||||||++|+|+++| ++|+|++ |.++       .+||++|++ 
T Consensus       322 ~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p-~~G~i~~-~~~~-------~i~y~~q~~~  392 (635)
T PRK11147        322 MENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQA-DSGRIHC-GTKL-------EVAYFDQHRA  392 (635)
T ss_pred             EeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-CCcEEEE-CCCc-------EEEEEeCccc
Confidence            36899999988899999999999999999999999999999999999988 6999998 4432       489999985 


Q ss_pred             CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250          80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD  158 (212)
Q Consensus        80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP  158 (212)
                      .+++.+||.+|+.+.....   ...  .....+.++++.+++. +..++++.+|||||||||+|||||+.+|++||||||
T Consensus       393 ~l~~~~tv~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEP  467 (635)
T PRK11147        393 ELDPEKTVMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEP  467 (635)
T ss_pred             ccCCCCCHHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            5888999999998743211   001  1134578899999996 568899999999999999999999999999999999


Q ss_pred             CC-CChhhHHHHHHHHHHHHhh--cCcchHHHHHHHH---HHHH-hcCeee
Q psy8250         159 LT-VDTLTVHEHMTLMARLKMD--RNLHHVERARTVD---ALLK-ELGLLK  202 (212)
Q Consensus       159 t~-lD~~~~~~~~~~l~~l~~~--~~~h~~~~~~~~~---~~l~-~g~~~~  202 (212)
                      |+ ||+.++..+.++|+++...  .++||.+++...+   .+++ +|++..
T Consensus       468 t~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~  518 (635)
T PRK11147        468 TNDLDVETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGNGKIGR  518 (635)
T ss_pred             CCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhcCEEEEEeCCCeEEE
Confidence            99 9999999999999887321  1379999886643   3565 687643

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.8e-39  Score=249.78  Aligned_cols=179  Identities=24%  Similarity=0.274  Sum_probs=156.3

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc--cccceEEEEcCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN--LMVKVSGFVPQH   78 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~--~~~~~i~~v~Q~   78 (212)
                      .+++++..+...+|.++||++.+||++.|.||||||||||||+|+|+++| .+|+|+++|.++...  ..++.+-|+-.+
T Consensus         5 a~~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p-~~G~v~~~~~~i~~~~~~~~~~l~yLGH~   83 (209)
T COG4133           5 AENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRP-DAGEVYWQGEPIQNVRESYHQALLYLGHQ   83 (209)
T ss_pred             hhhhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCC-CCCeEEecCCCCccchhhHHHHHHHhhcc
Confidence            36889999999999999999999999999999999999999999999999 699999999988642  244667788888


Q ss_pred             CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250          79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD  158 (212)
Q Consensus        79 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP  158 (212)
                      +.+=+.+|++||+.|+..++..      .....+.++++.+|+....|.++.+||-|||+||+|||-++..+++.|||||
T Consensus        84 ~giK~eLTa~ENL~F~~~~~~~------~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP  157 (209)
T COG4133          84 PGIKTELTALENLHFWQRFHGS------GNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEP  157 (209)
T ss_pred             ccccchhhHHHHHHHHHHHhCC------CchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCc
Confidence            8899999999999998877642      1245678999999999999999999999999999999999999999999999


Q ss_pred             CC-CChhhHHHHHHHHHHHHhhc-----CcchHH
Q psy8250         159 LT-VDTLTVHEHMTLMARLKMDR-----NLHHVE  186 (212)
Q Consensus       159 t~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~  186 (212)
                      ++ +|..+...+-.++..=..+.     .||+.-
T Consensus       158 ~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l  191 (209)
T COG4133         158 FTALDKEGVALLTALMAAHAAQGGIVLLTTHQPL  191 (209)
T ss_pred             ccccCHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Confidence            99 99999999988886644333     267643

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=3.8e-39  Score=317.79  Aligned_cols=204  Identities=25%  Similarity=0.345  Sum_probs=167.3

Q ss_pred             ccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCC---ceEEEECCEeCCcccccceEEEEcCCCCC
Q psy8250           5 HPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDV---DGQILLNGLEVEKNLMVKVSGFVPQHDLT   81 (212)
Q Consensus         5 ~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~---~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~   81 (212)
                      ++.+ ++.+|+|||+.+++|++++|+||||||||||||+|+|.+.| .   +|+|.++|.++.....++.++|++|++.+
T Consensus       173 ~k~~-~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~-~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~  250 (1470)
T PLN03140        173 AKKT-KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDP-SLKVSGEITYNGYRLNEFVPRKTSAYISQNDVH  250 (1470)
T ss_pred             CCCc-cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC-CCcceeEEEECCEechhhcccceeEEecccccC
Confidence            3444 46799999999999999999999999999999999999987 5   89999999988654446779999999999


Q ss_pred             CCCCCHHHHHHHHHhhhccc-------CCCHHHH------------------------HHHHHHHHHHcCCcccc-----
Q psy8250          82 VDTLTVHEHMTLMARLKMDR-------NLHHVER------------------------ARTVDALLKELGLLKCK-----  125 (212)
Q Consensus        82 ~~~ltv~e~l~~~~~~~~~~-------~~~~~~~------------------------~~~~~~~l~~~gl~~~~-----  125 (212)
                      ++.+||+|++.|.+.++...       .....+.                        ...++.+++.+||.++.     
T Consensus       251 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg  330 (1470)
T PLN03140        251 VGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVG  330 (1470)
T ss_pred             CCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeC
Confidence            99999999999987654211       0111110                        11356789999998765     


Q ss_pred             CCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-cC-----cchH-HHHHH-HH--HH
Q psy8250         126 NSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-RN-----LHHV-ERART-VD--AL  194 (212)
Q Consensus       126 ~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~~-----~h~~-~~~~~-~~--~~  194 (212)
                      ++.+..|||||||||+||++|+.+|+++++||||+ ||+.++.++.+.|++++.+ +.     +|+. +++.. .+  .+
T Consensus       331 ~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vil  410 (1470)
T PLN03140        331 DEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIIL  410 (1470)
T ss_pred             CccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEE
Confidence            55678999999999999999999999999999999 9999999999999999764 22     5875 45544 33  47


Q ss_pred             HHhcCeeecCCchhhh
Q psy8250         195 LKELGLLKCRPADELN  210 (212)
Q Consensus       195 l~~g~~~~~~~~~~~~  210 (212)
                      |++|++++.|+++++.
T Consensus       411 L~~G~ivy~G~~~~~~  426 (1470)
T PLN03140        411 LSEGQIVYQGPRDHIL  426 (1470)
T ss_pred             eeCceEEEeCCHHHHH
Confidence            8899999999998875

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=100.00  E-value=3.2e-39  Score=298.76  Aligned_cols=198  Identities=18%  Similarity=0.166  Sum_probs=152.4

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL   80 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~   80 (212)
                      ++++++.|+++.+|+||||+|++|+++||+||||||||||||+|+|++.| ++|+|.++|..        .++|++|.+.
T Consensus         6 i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p-~~G~I~~~~~~--------~~~~l~q~~~   76 (635)
T PRK11147          6 IHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLL-DDGRIIYEQDL--------IVARLQQDPP   76 (635)
T ss_pred             EeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC-CCeEEEeCCCC--------EEEEeccCCC
Confidence            47899999998999999999999999999999999999999999999988 69999998632        2577777653


Q ss_pred             CCCCCCHHHHHHHH------------------------------Hhhhc-ccCCCHHHHHHHHHHHHHHcCCccccCCCC
Q psy8250          81 TVDTLTVHEHMTLM------------------------------ARLKM-DRNLHHVERARTVDALLKELGLLKCKNSVL  129 (212)
Q Consensus        81 ~~~~ltv~e~l~~~------------------------------~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~  129 (212)
                      .....++.+++...                              ..... ...........++.++++.+|+.  .++++
T Consensus        77 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~~~~~  154 (635)
T PRK11147         77 RNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD--PDAAL  154 (635)
T ss_pred             CCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--CCCch
Confidence            33334555543210                              00000 00000012345688899999996  37899


Q ss_pred             CCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh--cCcchHHHHHHH-H--HHHHhcCee-e
Q psy8250         130 NVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD--RNLHHVERARTV-D--ALLKELGLL-K  202 (212)
Q Consensus       130 ~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~--~~~h~~~~~~~~-~--~~l~~g~~~-~  202 (212)
                      .+|||||||||+|||||+.+|++|||||||+ ||+.++..+.++|+++...  .++||.+++... +  ..|++|+++ +
T Consensus       155 ~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~  234 (635)
T PRK11147        155 SSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVSY  234 (635)
T ss_pred             hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEe
Confidence            9999999999999999999999999999999 9999999999999988421  137999988664 3  367899986 4


Q ss_pred             cCCchhh
Q psy8250         203 CRPADEL  209 (212)
Q Consensus       203 ~~~~~~~  209 (212)
                      .|+.++.
T Consensus       235 ~g~~~~~  241 (635)
T PRK11147        235 PGNYDQY  241 (635)
T ss_pred             cCCHHHH
Confidence            5766543

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=100.00  E-value=1.5e-39  Score=322.72  Aligned_cols=197  Identities=17%  Similarity=0.257  Sum_probs=165.7

Q ss_pred             cccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEc
Q psy8250           2 ETFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVP   76 (212)
Q Consensus         2 ~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~   76 (212)
                      ++++++|+.  ..+|+||||+|++||.+||+|+||||||||+++|+|++.  .+|+|.+||.++..   ..+++.++|||
T Consensus      1221 ~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~--~~G~I~IdG~di~~i~~~~lR~~is~Ip 1298 (1490)
T TIGR01271      1221 QGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS--TEGEIQIDGVSWNSVTLQTWRKAFGVIP 1298 (1490)
T ss_pred             EEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC--CCcEEEECCEEcccCCHHHHHhceEEEe
Confidence            678999964  679999999999999999999999999999999999985  48999999999864   34678899999


Q ss_pred             CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccC-----------CCCCCCChHHHHHHHHHHH
Q psy8250          77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKN-----------SVLNVLSGGERKRVALAVQ  145 (212)
Q Consensus        77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGqrqRv~lA~a  145 (212)
                      |+|.+|+. |+++|+....      ..    .++.+.++++.+++.+...           .....||||||||++||||
T Consensus      1299 Qdp~LF~G-TIR~NLdp~~------~~----tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARA 1367 (1490)
T TIGR01271      1299 QKVFIFSG-TFRKNLDPYE------QW----SDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARS 1367 (1490)
T ss_pred             CCCccCcc-CHHHHhCccc------CC----CHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHH
Confidence            99999987 9999996421      11    2345677888877754322           2234799999999999999


Q ss_pred             HhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250         146 TIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       146 l~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      |+++|+||||||||+ +|..+...+.+.|++.....    .+|.++.+..++  .+|++|+++..|+|+++.+
T Consensus      1368 LLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271      1368 ILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred             HhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence            999999999999999 99999999999999875543    369999888766  4788999999999998853

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>KOG0059|consensus

Probab=100.00  E-value=6.2e-39  Score=305.30  Aligned_cols=205  Identities=25%  Similarity=0.385  Sum_probs=186.6

Q ss_pred             cccccccCCcc-eeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc----cccceEEEEc
Q psy8250           2 ETFHPLFGDTN-YKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN----LMVKVSGFVP   76 (212)
Q Consensus         2 ~~l~~~~~~~~-~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~----~~~~~i~~v~   76 (212)
                      +++++.|+... +++++||.|++||+.|++|||||||||++++|+|...| ++|+++++|.++...    ..++.+||.|
T Consensus       568 ~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~-t~G~a~i~g~~i~~~~~~~~~~~~iGyCP  646 (885)
T KOG0059|consen  568 NNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKP-TSGEALIKGHDITVSTDFQQVRKQLGYCP  646 (885)
T ss_pred             cceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccC-CcceEEEecCccccccchhhhhhhcccCC
Confidence            67899998877 99999999999999999999999999999999999999 699999999988542    3678899999


Q ss_pred             CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250          77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ  156 (212)
Q Consensus        77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD  156 (212)
                      |...+++.+|.+|++.+++++++   ++..+..+.++..++.+++.+.++++++.+|||+|+|+++|.|++-+|++++||
T Consensus       647 Q~d~l~~~lT~rEhL~~~arlrG---~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LD  723 (885)
T KOG0059|consen  647 QFDALWEELTGREHLEFYARLRG---LPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLD  723 (885)
T ss_pred             chhhhhhhccHHHHHHHHHHHcC---CChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEec
Confidence            99999999999999999998864   455666777999999999999999999999999999999999999999999999


Q ss_pred             CCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH---HHHHHhcCeeecCCchhhh
Q psy8250         157 HDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV---DALLKELGLLKCRPADELN  210 (212)
Q Consensus       157 EPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~---~~~l~~g~~~~~~~~~~~~  210 (212)
                      |||+ +||.+++.+|+++.++++..     ++|.+|+++..   ..+|.+|++.+-|+++++.
T Consensus       724 EPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LK  786 (885)
T KOG0059|consen  724 EPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELK  786 (885)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHH
Confidence            9999 99999999999999998864     37999998764   3588899999999998875

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.3e-39  Score=255.55  Aligned_cols=207  Identities=18%  Similarity=0.200  Sum_probs=174.1

Q ss_pred             CcccccccCCc-ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCC--CCCCceEEEECCEeCCcc----cccceEE
Q psy8250           1 METFHPLFGDT-NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRI--QGDVDGQILLNGLEVEKN----LMVKVSG   73 (212)
Q Consensus         1 ~~~l~~~~~~~-~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~--~p~~~G~I~~~g~~~~~~----~~~~~i~   73 (212)
                      |+||+++-+++ .+|++||++|++||+++|+||||||||||.++|+|.-  .+ ++|+|.++|+++...    ..+.-+.
T Consensus         6 I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~V-t~G~I~~~GedI~~l~~~ERAr~Gif   84 (251)
T COG0396           6 IKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEV-TEGEILFDGEDILELSPDERARAGIF   84 (251)
T ss_pred             EeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceE-ecceEEECCcccccCCHhHHHhcCCE
Confidence            57899999885 9999999999999999999999999999999999975  34 699999999999653    2345578


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHhhhcc-cCCCHHHHHHHHHHHHHHcCCcc-ccCCCCC-CCChHHHHHHHHHHHHhhCC
Q psy8250          74 FVPQHDLTVDTLTVHEHMTLMARLKMD-RNLHHVERARTVDALLKELGLLK-CKNSVLN-VLSGGERKRVALAVQTIIVQ  150 (212)
Q Consensus        74 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~-~LSgGqrqRv~lA~al~~~p  150 (212)
                      ..||.|.-++..++.+.+......... ... ..+....+.+.++.+++++ +++|.++ .+|||||+|..|+..++.+|
T Consensus        85 LafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~-~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~leP  163 (251)
T COG0396          85 LAFQYPVEIPGVTNSDFLRAAMNARRGARGI-LPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEP  163 (251)
T ss_pred             EeecCCccCCCeeHHHHHHHHHHhhhccccc-cHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCC
Confidence            889999999999999998876653211 111 2355677899999999976 7888886 69999999999999999999


Q ss_pred             CeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH----HHHHHhcCeeecCCchhhh
Q psy8250         151 SGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV----DALLKELGLLKCRPADELN  210 (212)
Q Consensus       151 ~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~----~~~l~~g~~~~~~~~~~~~  210 (212)
                      ++.|||||-| ||..+.+.+.+.+++++.+.     .||.-+.+...    +.+|.+|+++..|.+ ++.
T Consensus       164 kl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-el~  232 (251)
T COG0396         164 KLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-ELA  232 (251)
T ss_pred             CEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-HHH
Confidence            9999999999 99999999999999999875     37886665543    247889999999998 443

>PLN03073 ABC transporter F family; Provisional

Probab=100.00  E-value=1.8e-38  Score=295.87  Aligned_cols=194  Identities=19%  Similarity=0.164  Sum_probs=155.0

Q ss_pred             CcccccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCC
Q psy8250           1 METFHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHD   79 (212)
Q Consensus         1 ~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~   79 (212)
                      ++++++.|+ +..+|+|+||+|.+|++++|+||||||||||||+|+|+++| ++|+|++++.        ..+||++|++
T Consensus       511 ~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p-~~G~I~~~~~--------~~igyv~Q~~  581 (718)
T PLN03073        511 FSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQP-SSGTVFRSAK--------VRMAVFSQHH  581 (718)
T ss_pred             EEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-CCceEEECCc--------eeEEEEeccc
Confidence            368899996 45699999999999999999999999999999999999998 6999998752        3589999986


Q ss_pred             CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-ccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250          80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD  158 (212)
Q Consensus        80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP  158 (212)
                        ++.+++.++..+...... ...    ....+.++++.+|+.. ..++++.+|||||||||+|||||+.+|++||||||
T Consensus       582 --~~~l~~~~~~~~~~~~~~-~~~----~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEP  654 (718)
T PLN03073        582 --VDGLDLSSNPLLYMMRCF-PGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEP  654 (718)
T ss_pred             --cccCCcchhHHHHHHHhc-CCC----CHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence              234556666443221111 111    1345788999999974 67899999999999999999999999999999999


Q ss_pred             CC-CChhhHHHHHHHHHHHHhh--cCcchHHHHHHHH---HHHHhcCee-ecCCchhhh
Q psy8250         159 LT-VDTLTVHEHMTLMARLKMD--RNLHHVERARTVD---ALLKELGLL-KCRPADELN  210 (212)
Q Consensus       159 t~-lD~~~~~~~~~~l~~l~~~--~~~h~~~~~~~~~---~~l~~g~~~-~~~~~~~~~  210 (212)
                      |+ ||+.++..+.+.|.++...  .++||.+.+...+   .+|++|+++ +.|+.++..
T Consensus       655 T~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~  713 (718)
T PLN03073        655 SNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYK  713 (718)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence            99 9999999998888775311  1379999887643   467899987 678877654

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=100.00  E-value=1.7e-38  Score=239.84  Aligned_cols=130  Identities=31%  Similarity=0.494  Sum_probs=116.1

Q ss_pred             eeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEcCCCCCCCCCCHHHH
Q psy8250          14 KESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQHDLTVDTLTVHEH   90 (212)
Q Consensus        14 l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~Q~~~~~~~ltv~e~   90 (212)
                      |+||||+|++|++++|+||||||||||+++|+|...| .+|.|.++|.++..   ...++.++|++|++.+++.+|+.+|
T Consensus         1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~-~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~   79 (137)
T PF00005_consen    1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPP-DSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN   79 (137)
T ss_dssp             EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHE-SEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH
T ss_pred             CCceEEEEcCCCEEEEEccCCCccccceeeecccccc-cccccccccccccccccccccccccccccccccccccccccc
Confidence            6899999999999999999999999999999999998 69999999999965   3456789999999999999999998


Q ss_pred             HHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCC----CCCChHHHHHHHHHHHHhhCCCeEEecCCCC
Q psy8250          91 MTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVL----NVLSGGERKRVALAVQTIIVQSGFVPQHDLT  160 (212)
Q Consensus        91 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~----~~LSgGqrqRv~lA~al~~~p~llilDEPt~  160 (212)
                                      ....++.++++.+++.+..++.+    .+||+|||||++|||||+.+|+++||||||+
T Consensus        80 ----------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~  137 (137)
T PF00005_consen   80 ----------------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN  137 (137)
T ss_dssp             ----------------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred             ----------------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence                            12345778888888876655555    9999999999999999999999999999996

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=100.00  E-value=3.4e-38  Score=241.14  Aligned_cols=128  Identities=22%  Similarity=0.289  Sum_probs=115.6

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL   80 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~   80 (212)
                      ++++++.|++..+++++||++++||+++|+||||||||||+++|+|+++| ++|+|+++|.        ..++|++|   
T Consensus         3 ~~~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~~~--------~~i~~~~~---   70 (144)
T cd03221           3 LENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEP-DEGIVTWGST--------VKIGYFEQ---   70 (144)
T ss_pred             EEEEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC-CceEEEECCe--------EEEEEEcc---
Confidence            36889999887899999999999999999999999999999999999998 6999999985        35899988   


Q ss_pred             CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC
Q psy8250          81 TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT  160 (212)
Q Consensus        81 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~  160 (212)
                                                                         ||+||+||++|||||+.+|+++|||||++
T Consensus        71 ---------------------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~   99 (144)
T cd03221          71 ---------------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTN   99 (144)
T ss_pred             ---------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence                                                               99999999999999999999999999999


Q ss_pred             -CChhhHHHHHHHHHHHHhh--cCcchHHHHHHH
Q psy8250         161 -VDTLTVHEHMTLMARLKMD--RNLHHVERARTV  191 (212)
Q Consensus       161 -lD~~~~~~~~~~l~~l~~~--~~~h~~~~~~~~  191 (212)
                       ||+.++..+.+++++++..  ..+|+.+.+...
T Consensus       100 ~LD~~~~~~l~~~l~~~~~til~~th~~~~~~~~  133 (144)
T cd03221         100 HLDLESIEALEEALKEYPGTVILVSHDRYFLDQV  133 (144)
T ss_pred             CCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHh
Confidence             9999999999999987421  137998887553

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=100.00  E-value=2.2e-38  Score=276.41  Aligned_cols=200  Identities=22%  Similarity=0.263  Sum_probs=160.0

Q ss_pred             CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEcCCCCCCCCCC
Q psy8250          10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQHDLTVDTLT   86 (212)
Q Consensus        10 ~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~Q~~~~~~~lt   86 (212)
                      .+.+++++||.+.+|+.+|||||||||||||.|+|.|..+| .+|.|.+||-++..   ..+-++|||+||+-.+|+. |
T Consensus       348 ~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p-~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G-T  425 (580)
T COG4618         348 KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPP-TSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG-T  425 (580)
T ss_pred             CCcceecceeEecCCceEEEECCCCccHHHHHHHHHccccc-CCCcEEecchhhhcCCHHHhccccCcCcccceecCC-c
Confidence            35799999999999999999999999999999999999999 69999999988743   4567899999999999988 9


Q ss_pred             HHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHc--CCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CCh
Q psy8250          87 VHEHMTLMARLKMDRNLHHVERARTVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDT  163 (212)
Q Consensus        87 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~  163 (212)
                      |.||+.-+..-......-.......+.+++-.+  |.+.....-...||||||||++|||||-.+|.+++||||-+ ||.
T Consensus       426 IaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~  505 (580)
T COG4618         426 IAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDS  505 (580)
T ss_pred             HHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcch
Confidence            999987432110000000112222345555444  33444444456899999999999999999999999999999 999


Q ss_pred             hhHHHHHHHHHHHHhhcC-----cchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250         164 LTVHEHMTLMARLKMDRN-----LHHVERARTVD--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       164 ~~~~~~~~~l~~l~~~~~-----~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      .....+.+.|..++.++.     +|-.....-.|  .+|++|++-..|+.+|+-.
T Consensus       506 ~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa  560 (580)
T COG4618         506 EGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLA  560 (580)
T ss_pred             hHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHH
Confidence            999999999999998763     69887765544  5899999999999999854

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=100.00  E-value=2.8e-38  Score=293.29  Aligned_cols=180  Identities=19%  Similarity=0.184  Sum_probs=144.6

Q ss_pred             CcccccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCC
Q psy8250           1 METFHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHD   79 (212)
Q Consensus         1 ~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~   79 (212)
                      ++++++.|+ ++.+++++||++++|++++|+||||||||||+++|+|+++| .+|+|.+++        ++.++|+||++
T Consensus       454 ~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~-~~G~i~~~~--------~~~i~~v~Q~~  524 (659)
T TIGR00954       454 FENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPV-YGGRLTKPA--------KGKLFYVPQRP  524 (659)
T ss_pred             EEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCeEeecC--------CCcEEEECCCC
Confidence            367888884 55799999999999999999999999999999999999988 699998864        34689999999


Q ss_pred             CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCC---------CCCCChHHHHHHHHHHHHhhCC
Q psy8250          80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSV---------LNVLSGGERKRVALAVQTIIVQ  150 (212)
Q Consensus        80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~---------~~~LSgGqrqRv~lA~al~~~p  150 (212)
                      .+++. |++||+.++........  .....+.+.++++.+++.+..+++         ..+||||||||++|||||+.+|
T Consensus       525 ~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p  601 (659)
T TIGR00954       525 YMTLG-TLRDQIIYPDSSEDMKR--RGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKP  601 (659)
T ss_pred             CCCCc-CHHHHHhcCCChhhhhc--cCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCC
Confidence            88877 99999987532110000  001234567889999997766553         3689999999999999999999


Q ss_pred             CeEEecCCCC-CChhhHHHHHHHHHHHHhh--cCcchHHHHHHHH
Q psy8250         151 SGFVPQHDLT-VDTLTVHEHMTLMARLKMD--RNLHHVERARTVD  192 (212)
Q Consensus       151 ~llilDEPt~-lD~~~~~~~~~~l~~l~~~--~~~h~~~~~~~~~  192 (212)
                      +++||||||+ ||+.+...+.+.+++....  ..+|+++.+..++
T Consensus       602 ~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~~~~d  646 (659)
T TIGR00954       602 QFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLWKYHE  646 (659)
T ss_pred             CEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHHHhCC
Confidence            9999999999 9999999999998774111  1379988765444

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=100.00  E-value=6.7e-38  Score=246.95  Aligned_cols=138  Identities=21%  Similarity=0.270  Sum_probs=119.7

Q ss_pred             cccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCC
Q psy8250           2 ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLT   81 (212)
Q Consensus         2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~   81 (212)
                      .++++.|+++.+++++ |++++|++++|+||||||||||+|+|+|+++| ++|+|.++|..         ++|++|++. 
T Consensus         4 ~~l~~~~~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~---------i~~~~q~~~-   71 (177)
T cd03222           4 PDCVKRYGVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIP-NGDNDEWDGIT---------PVYKPQYID-   71 (177)
T ss_pred             CCeEEEECCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCC-CCcEEEECCEE---------EEEEcccCC-
Confidence            4789999999999985 99999999999999999999999999999998 69999999864         688888542 


Q ss_pred             CCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-
Q psy8250          82 VDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-  160 (212)
Q Consensus        82 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-  160 (212)
                                                                        ||+|||||++|||||+.+|+++||||||+ 
T Consensus        72 --------------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~  101 (177)
T cd03222          72 --------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAY  101 (177)
T ss_pred             --------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCccc
Confidence                                                              99999999999999999999999999999 


Q ss_pred             CChhhHHHHHHHHHHHHhhc------CcchHHHHHHH-H--HHHHhcCee
Q psy8250         161 VDTLTVHEHMTLMARLKMDR------NLHHVERARTV-D--ALLKELGLL  201 (212)
Q Consensus       161 lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~-~--~~l~~g~~~  201 (212)
                      ||+.++..+.+++.+++.+.      .+|+++.+... +  .+++++-.+
T Consensus       102 LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~  151 (177)
T cd03222         102 LDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGV  151 (177)
T ss_pred             CCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCcc
Confidence            99999999999999987543      27999888653 2  245444333

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=6.8e-38  Score=241.33  Aligned_cols=201  Identities=21%  Similarity=0.233  Sum_probs=160.9

Q ss_pred             cccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCE---eCC--c---cc----cc
Q psy8250           2 ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGL---EVE--K---NL----MV   69 (212)
Q Consensus         2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~---~~~--~---~~----~~   69 (212)
                      .+++|.|+.....+||||++.|||++||+|+|||||||||+||++.+.| +.|+|.+.-.   +.+  .   .+    .+
T Consensus        10 ~~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p-~~G~v~Y~~r~~~~~dl~~msEaeRR~L~R   88 (258)
T COG4107          10 SGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTP-DAGTVTYRMRDGQPRDLYTMSEAERRRLLR   88 (258)
T ss_pred             hhhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCC-CCCeEEEEcCCCCchhHhhhchHHHHHHhh
Confidence            5799999999999999999999999999999999999999999999999 6999988642   221  1   11    23


Q ss_pred             ceEEEEcCCCCCCCCC------CHHHHHH-HHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-ccCCCCCCCChHHHHHHH
Q psy8250          70 KVSGFVPQHDLTVDTL------TVHEHMT-LMARLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVA  141 (212)
Q Consensus        70 ~~i~~v~Q~~~~~~~l------tv~e~l~-~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqrqRv~  141 (212)
                      ...|||.|+|.---.+      .+-|-+. .+.+-       .-.....+.+||+++.++. ..+..|..+||||+||+.
T Consensus        89 TeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RH-------YG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQ  161 (258)
T COG4107          89 TEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARH-------YGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQ  161 (258)
T ss_pred             hccceeecCccccceeeeccCCccchhHHhhhhhh-------hhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHH
Confidence            3579999998532222      2333222 12221       2234566789999999964 578889999999999999


Q ss_pred             HHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHH---HHHHHhcCeeecCCchhhh
Q psy8250         142 LAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR------NLHHVERARTV---DALLKELGLLKCRPADELN  210 (212)
Q Consensus       142 lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~---~~~l~~g~~~~~~~~~~~~  210 (212)
                      |||.|+..|+++++||||. ||...+.+++++++.+..+.      +|||+..++-.   ..+|++|+++..|-+|.+-
T Consensus       162 iARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GLTDrvL  240 (258)
T COG4107         162 IARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVL  240 (258)
T ss_pred             HHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEeccccccccc
Confidence            9999999999999999999 99999999999999998764      38999887654   3589999999999777653

>KOG0056|consensus

Probab=100.00  E-value=1.5e-39  Score=282.65  Aligned_cols=204  Identities=22%  Similarity=0.288  Sum_probs=163.9

Q ss_pred             cccccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEcC
Q psy8250           2 ETFHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQ   77 (212)
Q Consensus         2 ~~l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~Q   77 (212)
                      +++++.|+ ++++|+||||++.+|+.+||+||||+||||++|++..++.- .+|+|.+||+++.+   ..+|+.||.|||
T Consensus       541 snvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv-~sGsI~iDgqdIrnvt~~SLRs~IGVVPQ  619 (790)
T KOG0056|consen  541 SNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDV-NSGSITIDGQDIRNVTQSSLRSSIGVVPQ  619 (790)
T ss_pred             EEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhc-cCceEEEcCchHHHHHHHHHHHhcCcccC
Confidence            57888995 67899999999999999999999999999999999999987 69999999999854   357889999999


Q ss_pred             CCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHH-cCCccccCC----CCCCCChHHHHHHHHHHHHhhCCCe
Q psy8250          78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKE-LGLLKCKNS----VLNVLSGGERKRVALAVQTIIVQSG  152 (212)
Q Consensus        78 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gl~~~~~~----~~~~LSgGqrqRv~lA~al~~~p~l  152 (212)
                      +..+|++ |+..|+.++.....+   .......++..+-++ +++.+-.+.    +.-.|||||||||+|||+++.+|.+
T Consensus       620 DtvLFNd-TI~yNIryak~~Asn---eevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~i  695 (790)
T KOG0056|consen  620 DTVLFND-TILYNIRYAKPSASN---EEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSI  695 (790)
T ss_pred             cceeecc-eeeeheeecCCCCCh---HHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcE
Confidence            9998877 999999875332211   111112222222222 344443333    3446999999999999999999999


Q ss_pred             EEecCCCC-CChhhHHHHHHHHHHHHhhcC----cchHHHHHHHH--HHHHhcCeeecCCchhhh
Q psy8250         153 FVPQHDLT-VDTLTVHEHMTLMARLKMDRN----LHHVERARTVD--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       153 lilDEPt~-lD~~~~~~~~~~l~~l~~~~~----~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~  210 (212)
                      ++|||.|| ||..+.+.|...|.++...++    -|.+..+...+  .++.+|+|++-|..+|+-
T Consensus       696 IlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl  760 (790)
T KOG0056|consen  696 ILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELL  760 (790)
T ss_pred             EEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHH
Confidence            99999999 999999999999999987654    48888776655  478999999999988874

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=100.00  E-value=1.1e-37  Score=280.49  Aligned_cols=195  Identities=20%  Similarity=0.169  Sum_probs=157.4

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL   80 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~   80 (212)
                      ++++++.|+++.+|+++||++.+|+.+||||+||||||||||+|+|.+.| ++|+|...+.        -.++|++|++.
T Consensus         6 ~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~-~~G~i~~~~~--------~~v~~l~Q~~~   76 (530)
T COG0488           6 LENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP-DSGEVTRPKG--------LRVGYLSQEPP   76 (530)
T ss_pred             EeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcC-CCCeEeecCC--------ceEEEeCCCCC
Confidence            46899999999999999999999999999999999999999999999999 6999998643        13799999999


Q ss_pred             CCCCCCHHHHHHHHHhhhcc--cCCC-------------------------HHHHHHHHHHHHHHcCCccccCCCCCCCC
Q psy8250          81 TVDTLTVHEHMTLMARLKMD--RNLH-------------------------HVERARTVDALLKELGLLKCKNSVLNVLS  133 (212)
Q Consensus        81 ~~~~ltv~e~l~~~~~~~~~--~~~~-------------------------~~~~~~~~~~~l~~~gl~~~~~~~~~~LS  133 (212)
                      +.+..||.+.+..+..-...  ..+.                         .-..+.++..++..+|+.+. ++++++||
T Consensus        77 ~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LS  155 (530)
T COG0488          77 LDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLS  155 (530)
T ss_pred             cCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcC
Confidence            99999999988764321000  0000                         00123567788899999877 99999999


Q ss_pred             hHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc--CcchHHHHHHHH-H--HHHhcCe-eecCC
Q psy8250         134 GGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR--NLHHVERARTVD-A--LLKELGL-LKCRP  205 (212)
Q Consensus       134 gGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~--~~h~~~~~~~~~-~--~l~~g~~-~~~~~  205 (212)
                      ||||.||+||+||+.+|++|||||||+ ||..+...+.+.|.++...-  ++||-++...++ .  -+++|++ .+.|.
T Consensus       156 GG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gn  234 (530)
T COG0488         156 GGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGN  234 (530)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCCceeEecCC
Confidence            999999999999999999999999999 99999999999998876421  379987776543 2  4557765 33343

>PRK13409 putative ATPase RIL; Provisional

Probab=100.00  E-value=1.5e-37  Score=284.67  Aligned_cols=175  Identities=22%  Similarity=0.223  Sum_probs=145.0

Q ss_pred             cccccccCCc-ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEE-----------ECCEeCCcc---
Q psy8250           2 ETFHPLFGDT-NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQIL-----------LNGLEVEKN---   66 (212)
Q Consensus         2 ~~l~~~~~~~-~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~-----------~~g~~~~~~---   66 (212)
                      ++++++||.+ .+|++++ .+++|+++||+||||||||||+|+|+|++.| ++|+|.           ++|.++...   
T Consensus        77 ~~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p-~~G~i~~~~~~~~~~~~~~G~~l~~~~~~  154 (590)
T PRK13409         77 EEPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIP-NLGDYEEEPSWDEVLKRFRGTELQNYFKK  154 (590)
T ss_pred             cCceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccC-CCccccCCCcHHHHHHHhCChHHHHHHHH
Confidence            3588999874 5999999 8999999999999999999999999999999 699997           899887431   


Q ss_pred             --cccceEEEEcCCCCCCCC---CCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHH
Q psy8250          67 --LMVKVSGFVPQHDLTVDT---LTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVA  141 (212)
Q Consensus        67 --~~~~~i~~v~Q~~~~~~~---ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~  141 (212)
                        .....+++.+|....++.   .||.|++...            ....++.++++.+++.+..++++.+|||||||||+
T Consensus       155 ~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~  222 (590)
T PRK13409        155 LYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV------------DERGKLDEVVERLGLENILDRDISELSGGELQRVA  222 (590)
T ss_pred             HhccCcceeecccchhhhhhhhcchHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH
Confidence              111235555554333222   3898887631            12346789999999998899999999999999999


Q ss_pred             HHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH
Q psy8250         142 LAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV  191 (212)
Q Consensus       142 lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~  191 (212)
                      ||+||+.+|++|||||||+ ||+.++..+.++|+++++ .     .+|+++.+...
T Consensus       223 ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~~l~~~  277 (590)
T PRK13409        223 IAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLAVLDYL  277 (590)
T ss_pred             HHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHh
Confidence            9999999999999999999 999999999999999976 4     27999988664

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=1.5e-36  Score=244.95  Aligned_cols=190  Identities=18%  Similarity=0.154  Sum_probs=165.3

Q ss_pred             CCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHH
Q psy8250           9 GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVH   88 (212)
Q Consensus         9 ~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~   88 (212)
                      ....+|+||||++++||.+||||+||||||||+|+|+|.++| ++|+|.++|+-.+.         +-=...+-|++|.+
T Consensus        38 ~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~P-t~G~v~v~G~v~~l---------i~lg~Gf~pelTGr  107 (249)
T COG1134          38 AEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKP-TSGKVKVTGKVAPL---------IELGAGFDPELTGR  107 (249)
T ss_pred             ceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCC-CCceEEEcceEehh---------hhcccCCCcccchH
Confidence            345799999999999999999999999999999999999999 69999999974321         11123455788999


Q ss_pred             HHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHH
Q psy8250          89 EHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVH  167 (212)
Q Consensus        89 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~  167 (212)
                      ||+.+...+.   ++.+++.+..++++.+.-+|.++.+.++..+|.||+-|+++|.|...+|++||+||-.+ .|+.=++
T Consensus       108 eNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~  184 (249)
T COG1134         108 ENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQE  184 (249)
T ss_pred             HHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHH
Confidence            9999977765   45678889999999999999999999999999999999999999999999999999999 9999999


Q ss_pred             HHHHHHHHHHhhc-----CcchHHHHHHHH---HHHHhcCeeecCCchhhhc
Q psy8250         168 EHMTLMARLKMDR-----NLHHVERARTVD---ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       168 ~~~~~l~~l~~~~-----~~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~~  211 (212)
                      +=.+.+.++.++.     ++||++.+++.+   ..|++|.+...|.++++-+
T Consensus       185 K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~  236 (249)
T COG1134         185 KCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP  236 (249)
T ss_pred             HHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHH
Confidence            9999999986553     379999998754   4788999999999998753

>PLN03232 ABC transporter C family member; Provisional

Probab=100.00  E-value=4.6e-37  Score=305.24  Aligned_cols=189  Identities=17%  Similarity=0.205  Sum_probs=150.3

Q ss_pred             CcccccccCC---cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcC
Q psy8250           1 METFHPLFGD---TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQ   77 (212)
Q Consensus         1 ~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q   77 (212)
                      ++++++.|+.   +.+|+|+||+|++|+.++|+||||||||||+++|+|.++| .+|.+.         .+++.++||+|
T Consensus       617 ~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~-~~G~i~---------~~~~~Iayv~Q  686 (1495)
T PLN03232        617 IKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSH-AETSSV---------VIRGSVAYVPQ  686 (1495)
T ss_pred             EEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcc-cCCCEE---------EecCcEEEEcC
Confidence            3678888863   5699999999999999999999999999999999999998 587653         24567999999


Q ss_pred             CCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-----------ccCCCCCCCChHHHHHHHHHHHH
Q psy8250          78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-----------CKNSVLNVLSGGERKRVALAVQT  146 (212)
Q Consensus        78 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgGqrqRv~lA~al  146 (212)
                      +|.+++. |++||+.|+...          .+++..++++.+++.+           ....+..+||||||||++||||+
T Consensus       687 ~p~Lf~g-TIreNI~fg~~~----------~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAl  755 (1495)
T PLN03232        687 VSWIFNA-TVRENILFGSDF----------ESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAV  755 (1495)
T ss_pred             ccccccc-cHHHHhhcCCcc----------CHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHH
Confidence            9999876 999999986421          1233445555555432           23344557999999999999999


Q ss_pred             hhCCCeEEecCCCC-CChhhHHHHHHH-HHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhh
Q psy8250         147 IIVQSGFVPQHDLT-VDTLTVHEHMTL-MARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       147 ~~~p~llilDEPt~-lD~~~~~~~~~~-l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~  210 (212)
                      ..+|+++||||||| ||+.+.+++++. +....+..    .||+++.+..++  .+|++|+++..|+.+++.
T Consensus       756 y~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~  827 (1495)
T PLN03232        756 YSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELS  827 (1495)
T ss_pred             hcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHH
Confidence            99999999999999 999999988754 55443322    379998776655  478899999999988874

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=100.00  E-value=7.5e-37  Score=304.09  Aligned_cols=190  Identities=21%  Similarity=0.265  Sum_probs=151.5

Q ss_pred             cccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCC
Q psy8250           2 ETFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHD   79 (212)
Q Consensus         2 ~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~   79 (212)
                      +++++.|++  ..+|+|+||++++|++++|+||||||||||+++|+|+++| .+|+|.++|          .++|++|+|
T Consensus       640 ~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~-~~G~i~~~g----------~i~yv~Q~~  708 (1522)
T TIGR00957       640 HNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK-VEGHVHMKG----------SVAYVPQQA  708 (1522)
T ss_pred             EEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcc-CCcEEEECC----------EEEEEcCCc
Confidence            578888864  4699999999999999999999999999999999999998 699999987          389999999


Q ss_pred             CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHH---HHHHHc-----CCccccCCCCCCCChHHHHHHHHHHHHhhCCC
Q psy8250          80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD---ALLKEL-----GLLKCKNSVLNVLSGGERKRVALAVQTIIVQS  151 (212)
Q Consensus        80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~---~~l~~~-----gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~  151 (212)
                      .+++ .|++||+.++...      .. +....+.   .+.+.+     |.......+..+||||||||++||||++.+|+
T Consensus       709 ~l~~-~Ti~eNI~~g~~~------~~-~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~  780 (1522)
T TIGR00957       709 WIQN-DSLRENILFGKAL------NE-KYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNAD  780 (1522)
T ss_pred             cccC-CcHHHHhhcCCcc------CH-HHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence            8765 6999999985321      11 1111111   112222     22334567788999999999999999999999


Q ss_pred             eEEecCCCC-CChhhHHHHHHHHHHH---Hhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhh
Q psy8250         152 GFVPQHDLT-VDTLTVHEHMTLMARL---KMDR----NLHHVERARTVD--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       152 llilDEPt~-lD~~~~~~~~~~l~~l---~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~  210 (212)
                      ++||||||+ ||+.+.+.+++.+.+.   .+..    .||+++.+..++  .+|++|+++..|+++++.
T Consensus       781 illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~  849 (1522)
T TIGR00957       781 IYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELL  849 (1522)
T ss_pred             EEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHH
Confidence            999999999 9999999999988653   2221    379998876654  478899999999988874

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PLN03130 ABC transporter C family member; Provisional

Probab=100.00  E-value=6.4e-37  Score=305.06  Aligned_cols=188  Identities=16%  Similarity=0.221  Sum_probs=151.8

Q ss_pred             CcccccccCC---cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCc-eEEEECCEeCCcccccceEEEEc
Q psy8250           1 METFHPLFGD---TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVD-GQILLNGLEVEKNLMVKVSGFVP   76 (212)
Q Consensus         1 ~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~-G~I~~~g~~~~~~~~~~~i~~v~   76 (212)
                      ++++++.|+.   +.+|+|+||+|++|+.++|+||+|||||||+++|+|.++| .+ |+|.+.          ..++||+
T Consensus       617 ~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~-~~GG~I~l~----------~~Iayv~  685 (1622)
T PLN03130        617 IKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPP-RSDASVVIR----------GTVAYVP  685 (1622)
T ss_pred             EEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhcc-CCCceEEEc----------CeEEEEc
Confidence            3678888863   5699999999999999999999999999999999999998 68 899853          4589999


Q ss_pred             CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-----------ccCCCCCCCChHHHHHHHHHHH
Q psy8250          77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-----------CKNSVLNVLSGGERKRVALAVQ  145 (212)
Q Consensus        77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgGqrqRv~lA~a  145 (212)
                      |+|.+++. |++||+.|+...          .+++.+++++.+++.+           ....+..+||||||||++||||
T Consensus       686 Q~p~Lfng-TIreNI~fg~~~----------d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARA  754 (1622)
T PLN03130        686 QVSWIFNA-TVRDNILFGSPF----------DPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARA  754 (1622)
T ss_pred             CccccCCC-CHHHHHhCCCcc----------cHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHH
Confidence            99998875 999999986431          1234455555555532           3334456799999999999999


Q ss_pred             HhhCCCeEEecCCCC-CChhhHHHHHH-HHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhh
Q psy8250         146 TIIVQSGFVPQHDLT-VDTLTVHEHMT-LMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       146 l~~~p~llilDEPt~-lD~~~~~~~~~-~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~  210 (212)
                      +..+|+++||||||| ||+++.+++++ .+..+.+..    .||+++.+..++  .+|++|++++.|+.+++.
T Consensus       755 ly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~  827 (1622)
T PLN03130        755 VYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELS  827 (1622)
T ss_pred             HhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence            999999999999999 99999988864 555543322    379998776655  468899999999988874

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.1e-37  Score=266.90  Aligned_cols=207  Identities=20%  Similarity=0.258  Sum_probs=163.7

Q ss_pred             cccccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEcC
Q psy8250           2 ETFHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQ   77 (212)
Q Consensus         2 ~~l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~Q   77 (212)
                      +++++.|+ .+++|+++||++++|+.++++||+|+||||++++|..++.+ .+|.|.+||+++..   ...++.||.|||
T Consensus       266 ~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~-~sG~I~id~qdir~vtq~slR~aIg~VPQ  344 (497)
T COG5265         266 INVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDV-NSGSITIDGQDIRDVTQQSLRRAIGIVPQ  344 (497)
T ss_pred             EEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCC-cCceEEEcchhHHHhHHHHHHHHhCcCcc
Confidence            35778885 56799999999999999999999999999999999999999 69999999999854   457888999999


Q ss_pred             CCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHc--CCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEe
Q psy8250          78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVP  155 (212)
Q Consensus        78 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llil  155 (212)
                      +..+|++ |++.|+.++.................+..+++.+  |++.....+.-.|||||||||+|||+++.+|++++|
T Consensus       345 DtvLFND-ti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~  423 (497)
T COG5265         345 DTVLFND-TIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILIL  423 (497)
T ss_pred             cceehhh-hHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEE
Confidence            9988877 9999998754321100000111112223333333  333333344456999999999999999999999999


Q ss_pred             cCCCC-CChhhHHHHHHHHHHHHhhcC----cchHHHHHHHH--HHHHhcCeeecCCchhhh
Q psy8250         156 QHDLT-VDTLTVHEHMTLMARLKMDRN----LHHVERARTVD--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       156 DEPt~-lD~~~~~~~~~~l~~l~~~~~----~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~  210 (212)
                      ||.|| ||..+.+++...|++....++    -|.+..+...+  .+|++|++++.|+.+++-
T Consensus       424 deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll  485 (497)
T COG5265         424 DEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELL  485 (497)
T ss_pred             ehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHH
Confidence            99999 999999999999999987665    39888887665  489999999999988874

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=100.00  E-value=4.8e-36  Score=236.23  Aligned_cols=151  Identities=21%  Similarity=0.187  Sum_probs=121.6

Q ss_pred             CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHH
Q psy8250          10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHE   89 (212)
Q Consensus        10 ~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e   89 (212)
                      ...+|+|+||++++|++++|+|||||||||||++|.    + .+|++.+++... . ..+..++|++|            
T Consensus         7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~-~~G~v~~~~~~~-~-~~~~~~~~~~q------------   67 (176)
T cd03238           7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----Y-ASGKARLISFLP-K-FSRNKLIFIDQ------------   67 (176)
T ss_pred             eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----h-cCCcEEECCccc-c-cccccEEEEhH------------
Confidence            357999999999999999999999999999999985    3 489999987632 1 11234667765            


Q ss_pred             HHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-ccCCCCCCCChHHHHHHHHHHHHhhC--CCeEEecCCCC-CChhh
Q psy8250          90 HMTLMARLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQTIIV--QSGFVPQHDLT-VDTLT  165 (212)
Q Consensus        90 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqrqRv~lA~al~~~--p~llilDEPt~-lD~~~  165 (212)
                                             .++++.+++.. ..++++.+||+|||||++|||||+.+  |+++||||||+ ||+.+
T Consensus        68 -----------------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~  124 (176)
T cd03238          68 -----------------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQD  124 (176)
T ss_pred             -----------------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHH
Confidence                                   24677888875 47889999999999999999999999  99999999999 99999


Q ss_pred             HHHHHHHHHHHHhhc-----CcchHHHHHHHH--HHHHhcCeee
Q psy8250         166 VHEHMTLMARLKMDR-----NLHHVERARTVD--ALLKELGLLK  202 (212)
Q Consensus       166 ~~~~~~~l~~l~~~~-----~~h~~~~~~~~~--~~l~~g~~~~  202 (212)
                      .+.+.+.|+++++..     .+|+.+.+...+  .+|++|....
T Consensus       125 ~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~~~~  168 (176)
T cd03238         125 INQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGSGKS  168 (176)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCCCCC
Confidence            999999999987543     379988764333  2455554433

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=100.00  E-value=1.5e-35  Score=229.24  Aligned_cols=136  Identities=29%  Similarity=0.488  Sum_probs=121.8

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEEEcC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGFVPQ   77 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~v~Q   77 (212)
                      ++++++.|.++.+++++||++++|++++|+||||||||||+++|+|++.| .+|+|+++|.++...   .+++.++|++|
T Consensus         2 ~~~~~~~~~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~-~~G~i~~~~~~~~~~~~~~~~~~i~~~~q   80 (157)
T cd00267           2 IENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKP-TSGEILIDGKDIAKLPLEELRRRIGYVPQ   80 (157)
T ss_pred             eEEEEEEeCCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CccEEEECCEEcccCCHHHHHhceEEEee
Confidence            46888999888899999999999999999999999999999999999988 699999999887531   23466888888


Q ss_pred             CCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecC
Q psy8250          78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQH  157 (212)
Q Consensus        78 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDE  157 (212)
                                                                            ||+||+||++||||++.+|+++||||
T Consensus        81 ------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDE  106 (157)
T cd00267          81 ------------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDE  106 (157)
T ss_pred             ------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence                                                                  99999999999999999999999999


Q ss_pred             CCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH
Q psy8250         158 DLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV  191 (212)
Q Consensus       158 Pt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~  191 (212)
                      ||+ +|+.++..+.+.+.+++...     .+|+.+.+...
T Consensus       107 p~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~  146 (157)
T cd00267         107 PTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA  146 (157)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence            999 99999999999999987642     27999888664

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=100.00  E-value=4.9e-36  Score=297.67  Aligned_cols=187  Identities=23%  Similarity=0.277  Sum_probs=145.9

Q ss_pred             cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHH
Q psy8250          11 TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEH   90 (212)
Q Consensus        11 ~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~   90 (212)
                      +.+|+|+||+|++|++++|+|||||||||||++|+|+++| .+|+|.++|          .++|++|+|.+++. |++||
T Consensus       439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~-~~G~i~~~g----------~iayv~Q~~~l~~~-Ti~eN  506 (1490)
T TIGR01271       439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEP-SEGKIKHSG----------RISFSPQTSWIMPG-TIKDN  506 (1490)
T ss_pred             CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECC----------EEEEEeCCCccCCc-cHHHH
Confidence            4689999999999999999999999999999999999999 699999988          38999999998875 99999


Q ss_pred             HHHHHhhhcccCCCHHHHHHHHHHHHHHcC--CccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHH
Q psy8250          91 MTLMARLKMDRNLHHVERARTVDALLKELG--LLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVH  167 (212)
Q Consensus        91 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~g--l~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~  167 (212)
                      +.|+..... ..+........+.+.++.+.  .......+..+||||||||++||||++.+|+++|||||++ ||+.+.+
T Consensus       507 I~~g~~~~~-~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~  585 (1490)
T TIGR01271       507 IIFGLSYDE-YRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEK  585 (1490)
T ss_pred             HHhccccch-HHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence            998643110 00000000111233333332  2223456678999999999999999999999999999999 9999999


Q ss_pred             HHHHH-HHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhh
Q psy8250         168 EHMTL-MARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       168 ~~~~~-l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~  210 (212)
                      ++++. +..+.+..    .||+++.+..++  .+|++|+++..|+++++.
T Consensus       586 ~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~  635 (1490)
T TIGR01271       586 EIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQ  635 (1490)
T ss_pred             HHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            99974 56654332    379998876544  467899999999988874

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=5.8e-36  Score=229.61  Aligned_cols=184  Identities=20%  Similarity=0.229  Sum_probs=154.2

Q ss_pred             cccccccC-----C--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeC--C-----cc-
Q psy8250           2 ETFHPLFG-----D--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV--E-----KN-   66 (212)
Q Consensus         2 ~~l~~~~~-----~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~--~-----~~-   66 (212)
                      ++++|+|-     +  -++++++||+++.||++++-||||||||||||++-+.+.| ++|+|++....-  +     .. 
T Consensus         8 ~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~-d~G~I~v~H~g~~vdl~~a~pr~   86 (235)
T COG4778           8 SNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLP-DEGQILVRHEGEWVDLVTAEPRE   86 (235)
T ss_pred             ecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCC-CCceEEEEeCcchhhhhccChHH
Confidence            57778773     2  3589999999999999999999999999999999999999 699999965432  1     11 


Q ss_pred             --c-ccceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-ccCCCCCCCChHHHHHHHH
Q psy8250          67 --L-MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVAL  142 (212)
Q Consensus        67 --~-~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqrqRv~l  142 (212)
                        . +++.+|||.|.-...|..+..|.++.+..-.   +.+.+....++..+|.++++.+ +++-.|.++||||+|||.|
T Consensus        87 vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~---gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNI  163 (235)
T COG4778          87 VLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLAR---GVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNI  163 (235)
T ss_pred             HHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhh
Confidence              1 3456899999888888888888887765433   4567778888999999999964 6788899999999999999


Q ss_pred             HHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHH
Q psy8250         143 AVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERART  190 (212)
Q Consensus       143 A~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~  190 (212)
                      ||+++.+-+||+|||||+ ||..++.-+.++|.+-+..+     ..|| |+++.
T Consensus       164 aRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHD-eevre  216 (235)
T COG4778         164 ARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHD-EEVRE  216 (235)
T ss_pred             hhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeecc-HHHHH
Confidence            999999999999999999 99999999999999988764     3687 55544

>PLN03073 ABC transporter F family; Provisional

Probab=100.00  E-value=9.5e-37  Score=284.27  Aligned_cols=204  Identities=22%  Similarity=0.180  Sum_probs=147.9

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCC---CCCCceEEEECCEeCCccc----------
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRI---QGDVDGQILLNGLEVEKNL----------   67 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~---~p~~~G~I~~~g~~~~~~~----------   67 (212)
                      +++++++|+++.+|+|+||+|.+|+++||+||||||||||||+|+|..   .| .+|+|.+.++++....          
T Consensus       180 i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p-~~g~I~~~~Q~~~g~~~t~~~~v~~~  258 (718)
T PLN03073        180 MENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIP-KNCQILHVEQEVVGDDTTALQCVLNT  258 (718)
T ss_pred             EceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCC-CCCEEEEEeccCCCCCCCHHHHHHHh
Confidence            468999999888999999999999999999999999999999999864   45 5889876554321100          


Q ss_pred             -------ccceEEEEcCCCCCCCCCCHHHHH-----------------HHH-HhhhcccCCCHHHHHHHHHHHHHHcCCc
Q psy8250          68 -------MVKVSGFVPQHDLTVDTLTVHEHM-----------------TLM-ARLKMDRNLHHVERARTVDALLKELGLL  122 (212)
Q Consensus        68 -------~~~~i~~v~Q~~~~~~~ltv~e~l-----------------~~~-~~~~~~~~~~~~~~~~~~~~~l~~~gl~  122 (212)
                             ++..++|++|.+.+... ++.++.                 .-. ..+..   ........++.++++.+|+.
T Consensus       259 ~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~---~~~~~~~~r~~~~L~~lgl~  334 (718)
T PLN03073        259 DIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKRLEL---IDAYTAEARAASILAGLSFT  334 (718)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHHHHh---cCcchHHHHHHHHHHHCCCC
Confidence                   12235666665432111 111110                 000 00000   00113355678899999996


Q ss_pred             -cccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh--cCcchHHHHHHH-H--HHH
Q psy8250         123 -KCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD--RNLHHVERARTV-D--ALL  195 (212)
Q Consensus       123 -~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~--~~~h~~~~~~~~-~--~~l  195 (212)
                       +..++++.+||||||||++||+||+.+|++|||||||+ ||+.++..+.++|+++...  -++||.+.+... +  .+|
T Consensus       335 ~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~~~~d~i~~l  414 (718)
T PLN03073        335 PEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTDILHL  414 (718)
T ss_pred             hHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEE
Confidence             45788999999999999999999999999999999999 9999999999999987322  137999988764 3  467


Q ss_pred             HhcCee-ecCCchhh
Q psy8250         196 KELGLL-KCRPADEL  209 (212)
Q Consensus       196 ~~g~~~-~~~~~~~~  209 (212)
                      ++|++. +.|+.++.
T Consensus       415 ~~g~i~~~~g~~~~~  429 (718)
T PLN03073        415 HGQKLVTYKGDYDTF  429 (718)
T ss_pred             ECCEEEEeCCCHHHH
Confidence            799985 67776544

>PTZ00243 ABC transporter; Provisional

Probab=100.00  E-value=1.6e-35  Score=294.61  Aligned_cols=190  Identities=19%  Similarity=0.263  Sum_probs=149.2

Q ss_pred             cCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCH
Q psy8250           8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTV   87 (212)
Q Consensus         8 ~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv   87 (212)
                      ++++.+|+|+||+|++|++++|+|||||||||||++|+|++.| ++|+|.+.          +.++|++|+|.+++ .|+
T Consensus       670 ~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~-~~G~i~~~----------~~i~yv~Q~~~l~~-~Tv  737 (1560)
T PTZ00243        670 LEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEI-SEGRVWAE----------RSIAYVPQQAWIMN-ATV  737 (1560)
T ss_pred             cCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCcEEEEC----------CeEEEEeCCCccCC-CcH
Confidence            3556799999999999999999999999999999999999998 69999863          35899999998764 699


Q ss_pred             HHHHHHHHhhhcccCCCHHHHHHHHHHHHHHc--CCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChh
Q psy8250          88 HEHMTLMARLKMDRNLHHVERARTVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTL  164 (212)
Q Consensus        88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~  164 (212)
                      +||+.++..... ..+........+.+.++.+  |+....++++.+||||||||++|||||+.+|+++||||||+ ||+.
T Consensus       738 ~enI~~~~~~~~-~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~  816 (1560)
T PTZ00243        738 RGNILFFDEEDA-ARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAH  816 (1560)
T ss_pred             HHHHHcCChhhH-HHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHH
Confidence            999998432100 0000111112345556666  77777788899999999999999999999999999999999 9999


Q ss_pred             hHHHHHHHH-HHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhh
Q psy8250         165 TVHEHMTLM-ARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       165 ~~~~~~~~l-~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~  210 (212)
                      +.+.+++.+ .......    .||+++.+...+  .+|++|+++..|+.+++.
T Consensus       817 ~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~l~  869 (1560)
T PTZ00243        817 VGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFM  869 (1560)
T ss_pred             HHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence            999887643 3322221    379998876544  468899999999988864

>KOG0065|consensus

Probab=100.00  E-value=2.8e-34  Score=272.52  Aligned_cols=200  Identities=28%  Similarity=0.451  Sum_probs=176.3

Q ss_pred             CCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCC-CCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCH
Q psy8250           9 GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQG-DVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTV   87 (212)
Q Consensus         9 ~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p-~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv   87 (212)
                      +.+++|+||+.-++||..+||+|+|||||||||++|+|.... ..+|+|.++|.+.+....+|.+|||.|++...+.+||
T Consensus       802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TV  881 (1391)
T KOG0065|consen  802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTV  881 (1391)
T ss_pred             cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccch
Confidence            456799999999999999999999999999999999997542 2589999999999877788899999999999999999


Q ss_pred             HHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCC----CChHHHHHHHHHHHHhhCC-CeEEecCCCC-C
Q psy8250          88 HEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV----LSGGERKRVALAVQTIIVQ-SGFVPQHDLT-V  161 (212)
Q Consensus        88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~----LSgGqrqRv~lA~al~~~p-~llilDEPt~-l  161 (212)
                      +|.|.|.+.++.+...+..+..+.++++++.++|.++.+..++.    ||..||+|+.||.-|+.+| .||+|||||| |
T Consensus       882 rESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGL  961 (1391)
T KOG0065|consen  882 RESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGL  961 (1391)
T ss_pred             HHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCc
Confidence            99999999998877777778889999999999999988888776    9999999999999999999 9999999999 9


Q ss_pred             ChhhHHHHHHHHHHHHhhcC-----cchHHH-H-HHHH--HHHH-hcCeeecCCchh
Q psy8250         162 DTLTVHEHMTLMARLKMDRN-----LHHVER-A-RTVD--ALLK-ELGLLKCRPADE  208 (212)
Q Consensus       162 D~~~~~~~~~~l~~l~~~~~-----~h~~~~-~-~~~~--~~l~-~g~~~~~~~~~~  208 (212)
                      |..+...+++++++++..+.     .|+... + +..+  .+|+ -|+.++-|+..+
T Consensus       962 DsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen  962 DSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred             cHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence            99999999999999998753     598752 2 3445  3566 566788888654

>KOG0054|consensus

Probab=100.00  E-value=2.2e-34  Score=277.63  Aligned_cols=199  Identities=18%  Similarity=0.208  Sum_probs=166.8

Q ss_pred             CcccccccCCc--ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEEE
Q psy8250           1 METFHPLFGDT--NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGFV   75 (212)
Q Consensus         1 ~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~v   75 (212)
                      ++|++.+|...  .+|++|||+|++||.+||+|..|||||||+++|.++..| .+|+|.+||.++...   ++|++++++
T Consensus      1141 f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~-~~G~I~IDgvdI~~igL~dLRsrlsII 1219 (1381)
T KOG0054|consen 1141 FEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEP-AEGEILIDGVDISKIGLHDLRSRLSII 1219 (1381)
T ss_pred             EEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCc-cCCeEEEcCeecccccHHHHHhcCeee
Confidence            36889999654  799999999999999999999999999999999999998 699999999999763   578899999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccc-----------cCCCCCCCChHHHHHHHHHH
Q psy8250          76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKC-----------KNSVLNVLSGGERKRVALAV  144 (212)
Q Consensus        76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGqrqRv~lA~  144 (212)
                      ||+|.+|.+ |++.|+.=...          -.++.+.++|+.+++.+.           ......++|-||||.++|||
T Consensus      1220 PQdPvLFsG-TvR~NLDPf~e----------~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLAR 1288 (1381)
T KOG0054|consen 1220 PQDPVLFSG-TVRFNLDPFDE----------YSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLAR 1288 (1381)
T ss_pred             CCCCceecC-ccccccCcccc----------cCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHH
Confidence            999999987 99999862211          123456666776665432           23334679999999999999


Q ss_pred             HHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhcC----cchHHHHHHHHH--HHHhcCeeecCCchhhhc
Q psy8250         145 QTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDRN----LHHVERARTVDA--LLKELGLLKCRPADELNR  211 (212)
Q Consensus       145 al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~~----~h~~~~~~~~~~--~l~~g~~~~~~~~~~~~~  211 (212)
                      ||+++++||+|||+|+ .|+.+-..|.+.|++-=++.+    -|.+..+.+.|+  +|++|++++.++|.++.+
T Consensus      1289 ALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1289 ALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred             HHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHh
Confidence            9999999999999999 999999999999987544433    499998888764  799999999999998864

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=100.00  E-value=3.8e-33  Score=228.21  Aligned_cols=187  Identities=18%  Similarity=0.126  Sum_probs=126.4

Q ss_pred             cccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHH-HHHHcCCCCCCceEEEECC-------E---eCCcc---ccc-c
Q psy8250           6 PLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLL-ACISQRIQGDVDGQILLNG-------L---EVEKN---LMV-K   70 (212)
Q Consensus         6 ~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl-~~i~g~~~p~~~G~I~~~g-------~---~~~~~---~~~-~   70 (212)
                      +.+.+..+|++|||+|++||++||+||||||||||+ ..|..      .|++.+..       .   .+...   ..+ .
T Consensus         3 ~~~~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (226)
T cd03270           3 VRGAREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA------EGQRRYVESLSAYARQFLGQMDKPDVDSIEGL   76 (226)
T ss_pred             eccchhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH------HHHHHHhhcccchhhhhhcccCccccccccCC
Confidence            445567899999999999999999999999999996 33321      23221100       0   00000   011 1


Q ss_pred             eEEEEcCCCC--CCCCCCHHH---HHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-ccCCCCCCCChHHHHHHHHHH
Q psy8250          71 VSGFVPQHDL--TVDTLTVHE---HMTLMARLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAV  144 (212)
Q Consensus        71 ~i~~v~Q~~~--~~~~ltv~e---~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqrqRv~lA~  144 (212)
                      ..++..|++.  ..+..++..   ...+...+.     .......+ .++++.+++.+ ..++++.+||||||||++|||
T Consensus        77 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~lar  150 (226)
T cd03270          77 SPAIAIDQKTTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLAT  150 (226)
T ss_pred             CceEEecCCCCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccCccCcCCHHHHHHHHHHH
Confidence            2344444432  233345442   222211111     11112223 56899999986 589999999999999999999


Q ss_pred             HHhhCC--CeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHHH--HHH------HhcCeeecC
Q psy8250         145 QTIIVQ--SGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTVD--ALL------KELGLLKCR  204 (212)
Q Consensus       145 al~~~p--~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~~--~~l------~~g~~~~~~  204 (212)
                      ||+.+|  +++||||||+ ||+.++..+.++|++++.+.     .+||++.+..++  .+|      ++|+++++|
T Consensus       151 al~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g  226 (226)
T cd03270         151 QIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG  226 (226)
T ss_pred             HHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence            999998  5999999999 99999999999999987653     379998765333  367      788888765

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=100.00  E-value=6.1e-33  Score=249.88  Aligned_cols=174  Identities=22%  Similarity=0.266  Sum_probs=147.0

Q ss_pred             CcccccccCC-cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCC
Q psy8250           1 METFHPLFGD-TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHD   79 (212)
Q Consensus         1 ~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~   79 (212)
                      ++++++.|++ +.+++++||.|.+|+.+||+||||+|||||||+|+|...| .+|+|.+... +       .+||..|+.
T Consensus       324 ~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~-~~G~v~~g~~-v-------~igyf~Q~~  394 (530)
T COG0488         324 FENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGP-LSGTVKVGET-V-------KIGYFDQHR  394 (530)
T ss_pred             EeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhccc-CCceEEeCCc-e-------EEEEEEehh
Confidence            4789999966 6899999999999999999999999999999999999998 5999988532 2       489999986


Q ss_pred             -CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecC
Q psy8250          80 -LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQH  157 (212)
Q Consensus        80 -~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDE  157 (212)
                       .+.++.|+.|++.-...     .    .....+..+|..|++. +...+++..||||||.|+.+|+.++.+|.+|||||
T Consensus       395 ~~l~~~~t~~d~l~~~~~-----~----~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDE  465 (530)
T COG0488         395 DELDPDKTVLEELSEGFP-----D----GDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDE  465 (530)
T ss_pred             hhcCccCcHHHHHHhhCc-----c----ccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcC
Confidence             44577789888764321     1    1156788999999996 45788999999999999999999999999999999


Q ss_pred             CCC-CChhhHHHHHHHHHHHHhh--cCcchHHHHHHHH
Q psy8250         158 DLT-VDTLTVHEHMTLMARLKMD--RNLHHVERARTVD  192 (212)
Q Consensus       158 Pt~-lD~~~~~~~~~~l~~l~~~--~~~h~~~~~~~~~  192 (212)
                      ||+ ||..+...+.+.|..+.-.  .++||-+++...+
T Consensus       466 PTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~~va  503 (530)
T COG0488         466 PTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLDRVA  503 (530)
T ss_pred             CCccCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhc
Confidence            999 9999999999999988643  2489998886643

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.97  E-value=1.5e-32  Score=220.29  Aligned_cols=155  Identities=19%  Similarity=0.208  Sum_probs=121.1

Q ss_pred             ccee-eeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCC--------CceEEEECCEeCCcccccceEEEEcCCCCC
Q psy8250          11 TNYK-ESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD--------VDGQILLNGLEVEKNLMVKVSGFVPQHDLT   81 (212)
Q Consensus        11 ~~~l-~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~--------~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~   81 (212)
                      ..-+ +++++++.+| +++|+||||||||||+++|+|++.+.        ..|++.+.|.+.......+.++|+||++..
T Consensus         9 fr~~~~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~   87 (197)
T cd03278           9 FKSFADKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDG   87 (197)
T ss_pred             CcCcCCCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCC
Confidence            3345 7899999999 99999999999999999999987541        134677777766443445679999999876


Q ss_pred             CCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhh----CCCeEEecC
Q psy8250          82 VDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTII----VQSGFVPQH  157 (212)
Q Consensus        82 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~----~p~llilDE  157 (212)
                      +          |.  .   .      ...++.++++.   .+..++++.+||+|||||++||++++.    +|+++||||
T Consensus        88 ~----------~~--~---~------~~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDE  143 (197)
T cd03278          88 R----------YS--I---I------SQGDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDE  143 (197)
T ss_pred             c----------ee--E---E------ehhhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence            5          10  0   0      02345666666   456788899999999999999999974    569999999


Q ss_pred             CCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHH
Q psy8250         158 DLT-VDTLTVHEHMTLMARLKMDR----NLHHVERART  190 (212)
Q Consensus       158 Pt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~  190 (212)
                      ||+ +|+..+..++++|+++++..    .+|+++.+..
T Consensus       144 P~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~  181 (197)
T cd03278         144 VDAALDDANVERFARLLKEFSKETQFIVITHRKGTMEA  181 (197)
T ss_pred             CcccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhh
Confidence            999 99999999999999986532    3799887643

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.97  E-value=2.1e-31  Score=221.59  Aligned_cols=187  Identities=19%  Similarity=0.227  Sum_probs=143.0

Q ss_pred             cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHH-----cCC-----CCC----------CceEEEECCEeCCcc----
Q psy8250          11 TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACIS-----QRI-----QGD----------VDGQILLNGLEVEKN----   66 (212)
Q Consensus        11 ~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~-----g~~-----~p~----------~~G~I~~~g~~~~~~----   66 (212)
                      ..-|+||+++|+.|.+++|.|+||||||||++.+.     ..+     .|.          ..--|.++..++...    
T Consensus         8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~   87 (261)
T cd03271           8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN   87 (261)
T ss_pred             hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence            35689999999999999999999999999998662     110     010          012467777766321    


Q ss_pred             ---------cccc----------------eEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCC
Q psy8250          67 ---------LMVK----------------VSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGL  121 (212)
Q Consensus        67 ---------~~~~----------------~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl  121 (212)
                               .+|+                .+.|..++...+..+|+.|++.|+....         ...++.++++.+|+
T Consensus        88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL  158 (261)
T cd03271          88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGL  158 (261)
T ss_pred             HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCC
Confidence                     0000                1345555555667899999998865432         12456789999999


Q ss_pred             cc-ccCCCCCCCChHHHHHHHHHHHHhhC---CCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH
Q psy8250         122 LK-CKNSVLNVLSGGERKRVALAVQTIIV---QSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV  191 (212)
Q Consensus       122 ~~-~~~~~~~~LSgGqrqRv~lA~al~~~---p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~  191 (212)
                      .. ..++++.+|||||+||++||++|+.+   |+++||||||+ ||+.....++++|+++++++     .+|+++.+...
T Consensus       159 ~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~a  238 (261)
T cd03271         159 GYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCA  238 (261)
T ss_pred             chhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhC
Confidence            87 57999999999999999999999996   79999999999 99999999999999998653     37999887654


Q ss_pred             H--HHH------HhcCeeecCCc
Q psy8250         192 D--ALL------KELGLLKCRPA  206 (212)
Q Consensus       192 ~--~~l------~~g~~~~~~~~  206 (212)
                      +  ..|      ++|++++.|++
T Consensus       239 D~ii~Lgp~~g~~~G~iv~~Gt~  261 (261)
T cd03271         239 DWIIDLGPEGGDGGGQVVASGTP  261 (261)
T ss_pred             CEEEEecCCcCCCCCEEEEeCCC
Confidence            4  357      68889998874

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>KOG0054|consensus

Probab=99.97  E-value=1.6e-31  Score=257.91  Aligned_cols=178  Identities=23%  Similarity=0.324  Sum_probs=149.1

Q ss_pred             ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHH
Q psy8250          12 NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHM   91 (212)
Q Consensus        12 ~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l   91 (212)
                      ..|+||||+|++|+.+||+||-|||||+||.+|.|.++. .+|++.++|.          ++|+||.|.+++. ||+||+
T Consensus       535 ~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~-~sG~v~v~gs----------iaYv~Q~pWI~ng-TvreNI  602 (1381)
T KOG0054|consen  535 PTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPK-LSGSVAVNGS----------VAYVPQQPWIQNG-TVRENI  602 (1381)
T ss_pred             ccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCccc-ccceEEEcCe----------EEEeccccHhhCC-cHHHhh
Confidence            489999999999999999999999999999999999998 6999999986          7999999988766 999999


Q ss_pred             HHHHhhhcccCCCHHHHHHHHHHHHHHcCCccc-----------cCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC
Q psy8250          92 TLMARLKMDRNLHHVERARTVDALLKELGLLKC-----------KNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT  160 (212)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~  160 (212)
                      .|+..+          .+++.++.++.+.|.+.           ...+.-+||||||||++||||+-++.++++||.|+|
T Consensus       603 LFG~~~----------d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplS  672 (1381)
T KOG0054|consen  603 LFGSPY----------DEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLS  672 (1381)
T ss_pred             hcCccc----------cHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcch
Confidence            997543          23455666666666432           244556899999999999999999999999999999


Q ss_pred             -CChhhHHHHHHHHH-HHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250         161 -VDTLTVHEHMTLMA-RLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       161 -lD~~~~~~~~~~l~-~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~  211 (212)
                       +|.+..+++++-.- .+-+..    +||.++....++  .+|++|++...|+.+|+.+
T Consensus       673 AVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~  731 (1381)
T KOG0054|consen  673 AVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLK  731 (1381)
T ss_pred             hhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHh
Confidence             99999999885543 332221    489998887765  5899999999999998863

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.97  E-value=1.1e-31  Score=207.00  Aligned_cols=189  Identities=24%  Similarity=0.299  Sum_probs=159.3

Q ss_pred             eeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEcCCCCCCCCCCHHH
Q psy8250          13 YKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQHDLTVDTLTVHE   89 (212)
Q Consensus        13 ~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~Q~~~~~~~ltv~e   89 (212)
                      -|-.+|.++..||++-+||||||||||||-.++|+++  .+|+|.++|.++..   .++.++.+|+.|+....+.|.|+.
T Consensus        14 RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~--~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~   91 (248)
T COG4138          14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWH   91 (248)
T ss_pred             cccccccccccceEEEEECCCCccHHHHHHHHhCCCC--CCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhh
Confidence            3567899999999999999999999999999999875  49999999999853   345667789999877777889998


Q ss_pred             HHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhh-----CC--CeEEecCCCC-C
Q psy8250          90 HMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTII-----VQ--SGFVPQHDLT-V  161 (212)
Q Consensus        90 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~-----~p--~llilDEPt~-l  161 (212)
                      ++.+.-        +.++....+.++...+++++.+.+.+++|||||-|||-+|...++     +|  +++|+|||.+ |
T Consensus        92 YL~L~q--------P~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~L  163 (248)
T COG4138          92 YLTLHQ--------PDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSL  163 (248)
T ss_pred             hhhhcC--------chHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcch
Confidence            887532        335566778899999999999999999999999999999977765     33  7999999999 9


Q ss_pred             ChhhHHHHHHHHHHHHhhcC-----cchHHHHHH-H--HHHHHhcCeeecCCchhhhc
Q psy8250         162 DTLTVHEHMTLMARLKMDRN-----LHHVERART-V--DALLKELGLLKCRPADELNR  211 (212)
Q Consensus       162 D~~~~~~~~~~l~~l~~~~~-----~h~~~~~~~-~--~~~l~~g~~~~~~~~~~~~~  211 (212)
                      |...+..+-.+|.++...+.     .||++..-. .  .-++++|+++.+|..+|+-+
T Consensus       164 DvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt  221 (248)
T COG4138         164 DVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLT  221 (248)
T ss_pred             hHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcC
Confidence            99999999999999987652     599986644 3  34899999999999998754

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.96  E-value=3.5e-30  Score=212.29  Aligned_cols=165  Identities=17%  Similarity=0.223  Sum_probs=116.6

Q ss_pred             cccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHc----------------CCCCCCce--------EEEECCE
Q psy8250           6 PLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQ----------------RIQGDVDG--------QILLNGL   61 (212)
Q Consensus         6 ~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g----------------~~~p~~~G--------~I~~~g~   61 (212)
                      ++|++..++++++     |++++|+||||||||||+++|++                ++.+ .+|        +|.+++.
T Consensus        10 ksy~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~-~~~~~~~~~~v~i~~~~~   83 (243)
T cd03272          10 KSYKDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHE-GSGPSVMSAYVEIIFDNS   83 (243)
T ss_pred             cCcccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeC-CCCCCCceEEEEEEEEcC
Confidence            4677778888876     78999999999999999999983                3444 355        5566553


Q ss_pred             e----CCc--ccccceEEEEcCCCCCCC-CCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCCh
Q psy8250          62 E----VEK--NLMVKVSGFVPQHDLTVD-TLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSG  134 (212)
Q Consensus        62 ~----~~~--~~~~~~i~~v~Q~~~~~~-~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSg  134 (212)
                      +    +..  ...++.+++++|+..+++ ..|..|...+............  .......+.+.+++.+..++++.+|||
T Consensus        84 ~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~--~~~~qg~i~~l~~l~~~~~~~~~~lS~  161 (243)
T cd03272          84 DNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPY--YIVPQGKINSLTNMKQDEQQEMQQLSG  161 (243)
T ss_pred             CCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCc--EEEEcCchHHhhhccccccccccccCH
Confidence            2    111  134566899999887776 4577666555443311110000  000011233345566667788999999


Q ss_pred             HHHHHHHHHHHHhh----CCCeEEecCCCC-CChhhHHHHHHHHHHHHh
Q psy8250         135 GERKRVALAVQTII----VQSGFVPQHDLT-VDTLTVHEHMTLMARLKM  178 (212)
Q Consensus       135 GqrqRv~lA~al~~----~p~llilDEPt~-lD~~~~~~~~~~l~~l~~  178 (212)
                      |||||++|||||+.    +|+++|+||||+ +|+.+++.+++.|++++.
T Consensus       162 G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~  210 (243)
T cd03272         162 GQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD  210 (243)
T ss_pred             HHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC
Confidence            99999999999974    589999999999 999999999999999865

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.96  E-value=1.4e-30  Score=216.08  Aligned_cols=166  Identities=17%  Similarity=0.135  Sum_probs=123.4

Q ss_pred             CcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCE-eCCc-----ccccceEEEEcCCC---------CCCCCCCHH
Q psy8250          24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGL-EVEK-----NLMVKVSGFVPQHD---------LTVDTLTVH   88 (212)
Q Consensus        24 Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~-~~~~-----~~~~~~i~~v~Q~~---------~~~~~ltv~   88 (212)
                      ..+++|+||||||||||+++|++++.+...|++.+.+. ++-.     ......+++++|++         .+.+.+||.
T Consensus        25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~  104 (251)
T cd03273          25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT  104 (251)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence            55999999999999999999999987633568888776 3211     11234789999985         234577888


Q ss_pred             HHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc--------------------cccCCCCCCCChHHHHHHHHHHHHh-
Q psy8250          89 EHMTLMARLKMDRNLHHVERARTVDALLKELGLL--------------------KCKNSVLNVLSGGERKRVALAVQTI-  147 (212)
Q Consensus        89 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--------------------~~~~~~~~~LSgGqrqRv~lA~al~-  147 (212)
                      +++........... .+....+++.++++.+|+.                    +..++++.+||+|||||++||+||+ 
T Consensus       105 r~I~~~~~~~~~in-~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~  183 (251)
T cd03273         105 RQIVLGGTNKYLIN-GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILAL  183 (251)
T ss_pred             EEEEcCCceEEEEC-CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHH
Confidence            77755322111000 1123346788999999986                    4456889999999999999999998 


Q ss_pred             ---hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHH
Q psy8250         148 ---IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERART  190 (212)
Q Consensus       148 ---~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~  190 (212)
                         .+|+++|+||||+ ||+..+..++++|+++.+..    .+|+.+....
T Consensus       184 ~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~  234 (251)
T cd03273         184 LLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNN  234 (251)
T ss_pred             hhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHh
Confidence               4789999999999 99999999999999986432    2798555443

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.96  E-value=5.4e-29  Score=220.46  Aligned_cols=196  Identities=19%  Similarity=0.265  Sum_probs=163.6

Q ss_pred             eeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc----cccceEEEEcCCC---CCCCCC
Q psy8250          13 YKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN----LMVKVSGFVPQHD---LTVDTL   85 (212)
Q Consensus        13 ~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~----~~~~~i~~v~Q~~---~~~~~l   85 (212)
                      .++|+||++.+||++||.|-=|||+|-|+++|.|..++ .+|+|.++|+++...    ..+.-++|||.+.   .++..+
T Consensus       274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~-~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~  352 (500)
T COG1129         274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPA-SSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDM  352 (500)
T ss_pred             ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcC-CCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCC
Confidence            57899999999999999999999999999999997777 699999999998543    3455689999874   688999


Q ss_pred             CHHHHHHHHHhhhcc-c-CCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-C
Q psy8250          86 TVHEHMTLMARLKMD-R-NLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-V  161 (212)
Q Consensus        86 tv~e~l~~~~~~~~~-~-~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-l  161 (212)
                      ++.+|+.+....+.. . -++.....+.++++.+.+++. +..+.++.+||||.+|||.|||.|..+|++|||||||. .
T Consensus       353 sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGI  432 (500)
T COG1129         353 SIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGI  432 (500)
T ss_pred             cHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCc
Confidence            999999887322211 1 245556667889999999984 45678999999999999999999999999999999999 9


Q ss_pred             ChhhHHHHHHHHHHHHhhcC-----cchHHHHHHH-H--HHHHhcCeeecCCchhh
Q psy8250         162 DTLTVHEHMTLMARLKMDRN-----LHHVERARTV-D--ALLKELGLLKCRPADEL  209 (212)
Q Consensus       162 D~~~~~~~~~~l~~l~~~~~-----~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~  209 (212)
                      |.-++.+|+++|++++.++.     +-+++++... +  .+|++|+++..-+.+++
T Consensus       433 DVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~~  488 (500)
T COG1129         433 DVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDREEA  488 (500)
T ss_pred             ccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEeccccC
Confidence            99999999999999998853     6777776543 3  48999999876655544

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.95  E-value=1.6e-30  Score=210.80  Aligned_cols=165  Identities=14%  Similarity=0.100  Sum_probs=120.1

Q ss_pred             cccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCC
Q psy8250           6 PLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTL   85 (212)
Q Consensus         6 ~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~l   85 (212)
                      +.|++..+++++++     ++++|+||||||||||+++|.-.           +|.+... ...+.+++++|+..+++.+
T Consensus        12 k~~~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~-----------~G~~~~~-~~~~~i~~~~~~~~~~~~~   74 (212)
T cd03274          12 KSYAGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV-----------FGFRASK-MRQKKLSDLIHNSAGHPNL   74 (212)
T ss_pred             ccCCCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHH-----------hccCHHH-hhhhhHHHHhcCCCCCCCC
Confidence            47888889999987     89999999999999999999721           2222111 1124578888888888888


Q ss_pred             CHHHHHHHHHhhhc-----ccCCCHHHHHH--HHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhh----CCCeEE
Q psy8250          86 TVHEHMTLMARLKM-----DRNLHHVERAR--TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTII----VQSGFV  154 (212)
Q Consensus        86 tv~e~l~~~~~~~~-----~~~~~~~~~~~--~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~----~p~lli  154 (212)
                      ++.+++.+......     ..+........  ...++++.+++.+..++++..||+|||||++||+|++.    +|+++|
T Consensus        75 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ili  154 (212)
T cd03274          75 DSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYV  154 (212)
T ss_pred             ceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEE
Confidence            88877655432210     00111000000  12456677788888888899999999999999999975    479999


Q ss_pred             ecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHH
Q psy8250         155 PQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVER  187 (212)
Q Consensus       155 lDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~  187 (212)
                      +||||+ +|+.+...+++.++++++..    .+|+.+.
T Consensus       155 lDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~  192 (212)
T cd03274         155 MDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNM  192 (212)
T ss_pred             EcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHH
Confidence            999999 99999999999999986543    2688543

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.95  E-value=3.7e-28  Score=197.00  Aligned_cols=171  Identities=19%  Similarity=0.190  Sum_probs=114.9

Q ss_pred             eeeEEEEc-CCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECC--EeCCcccccceEEEEcCCCCCCCCCCHHHHH
Q psy8250          15 ESLSGIAE-SGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG--LEVEKNLMVKVSGFVPQHDLTVDTLTVHEHM   91 (212)
Q Consensus        15 ~~vs~~i~-~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g--~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l   91 (212)
                      .+|+|... +|++++|+||||||||||+++|++.+.....+....+.  ..+........++++||++....  ++..+.
T Consensus        18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~--~~~r~~   95 (213)
T cd03279          18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY--RVERSR   95 (213)
T ss_pred             eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeEE--EEEEec
Confidence            55666644 58999999999999999999999644211234333321  11122234456899998763211  111110


Q ss_pred             HHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhh----------CCCeEEecCCCC-
Q psy8250          92 TLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTII----------VQSGFVPQHDLT-  160 (212)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~----------~p~llilDEPt~-  160 (212)
                                +.+.......+  .+...++.+..++++.+||+||+||++|||||+.          +|+++||||||+ 
T Consensus        96 ----------gl~~~~~~~~~--~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~  163 (213)
T cd03279          96 ----------GLDYDQFTRIV--LLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGT  163 (213)
T ss_pred             ----------CCCHHHHHHhh--hhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCccc
Confidence                      12221111111  2444556777889999999999999999999985          568999999999 


Q ss_pred             CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHHH---HHHHhcC
Q psy8250         161 VDTLTVHEHMTLMARLKMDR-----NLHHVERARTVD---ALLKELG  199 (212)
Q Consensus       161 lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~~---~~l~~g~  199 (212)
                      +|+.+...+.++|.+++++.     .+|+.+.+...+   .++++|.
T Consensus       164 lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~  210 (213)
T cd03279         164 LDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPG  210 (213)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCC
Confidence            99999999999999997643     379998876543   2455553

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>KOG0927|consensus

Probab=99.95  E-value=4.5e-28  Score=213.10  Aligned_cols=174  Identities=20%  Similarity=0.173  Sum_probs=138.2

Q ss_pred             cccccccCCc-ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCC-
Q psy8250           2 ETFHPLFGDT-NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHD-   79 (212)
Q Consensus         2 ~~l~~~~~~~-~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~-   79 (212)
                      +++++.|.+. .++++++|-|+.++.+++|||||+|||||||+++|.+.| ..|.|.-.-..        .+++..|+. 
T Consensus       393 ~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p-~~G~vs~~~H~--------~~~~y~Qh~~  463 (614)
T KOG0927|consen  393 QNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQP-TIGMVSRHSHN--------KLPRYNQHLA  463 (614)
T ss_pred             eccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccc-ccccccccccc--------cchhhhhhhH
Confidence            5788888655 689999999999999999999999999999999999999 69988654322        234545542 


Q ss_pred             -CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecC
Q psy8250          80 -LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQH  157 (212)
Q Consensus        80 -~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDE  157 (212)
                       .+.-..++.|++.-.   .     +.....+.+..++.++||. +....++.+||+|||.||.+|+.++.+|.+|+|||
T Consensus       464 e~ldl~~s~le~~~~~---~-----~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDE  535 (614)
T KOG0927|consen  464 EQLDLDKSSLEFMMPK---F-----PDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDE  535 (614)
T ss_pred             hhcCcchhHHHHHHHh---c-----cccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecC
Confidence             233445666655421   1     1122456678899999997 56788899999999999999999999999999999


Q ss_pred             CCC-CChhhHHHHHHHHHHHHhhc--CcchHHHHHHHH
Q psy8250         158 DLT-VDTLTVHEHMTLMARLKMDR--NLHHVERARTVD  192 (212)
Q Consensus       158 Pt~-lD~~~~~~~~~~l~~l~~~~--~~h~~~~~~~~~  192 (212)
                      ||+ ||..+...+.+.|.++....  ++||...+.++.
T Consensus       536 PtnhLDi~tid~laeaiNe~~Ggvv~vSHDfrlI~qVa  573 (614)
T KOG0927|consen  536 PTNHLDIETIDALAEAINEFPGGVVLVSHDFRLISQVA  573 (614)
T ss_pred             CCcCCCchhHHHHHHHHhccCCceeeeechhhHHHHHH
Confidence            999 99999999999999885321  479998887653

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.95  E-value=5.6e-28  Score=194.79  Aligned_cols=152  Identities=17%  Similarity=0.109  Sum_probs=113.2

Q ss_pred             eeeEEEEcCCcEEEEECCCCccHHHHHHHHH----cCCCCCCceEEEECCEeCCcccccceEEEEcCCC-----CCCCCC
Q psy8250          15 ESLSGIAESGSLLAIMGPSGAGKTTLLACIS----QRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHD-----LTVDTL   85 (212)
Q Consensus        15 ~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~----g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~-----~~~~~l   85 (212)
                      +..++++.+| +++|+||||||||||+++|.    |...| .+|.+..+...+........++++||++     .....+
T Consensus        14 ~~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~-~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~   91 (204)
T cd03240          14 ERSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPP-NSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSL   91 (204)
T ss_pred             CceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCc-ccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEh
Confidence            3445667788 99999999999999999995    87776 4666652222233334456789999987     334455


Q ss_pred             CHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHH------HHHHHHHhhCCCeEEecCCC
Q psy8250          86 TVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKR------VALAVQTIIVQSGFVPQHDL  159 (212)
Q Consensus        86 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqR------v~lA~al~~~p~llilDEPt  159 (212)
                      |+++|+.+..         .    ..+.+.+         ++.+.+||+||+||      ++||||++.+|+++|+|||+
T Consensus        92 ~~~~~~~~~~---------~----~~~~~~~---------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~  149 (204)
T cd03240          92 AILENVIFCH---------Q----GESNWPL---------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPT  149 (204)
T ss_pred             hHhhceeeec---------h----HHHHHHH---------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCc
Confidence            7787775421         1    1122222         67889999999996      78999999999999999999


Q ss_pred             C-CChhhHH-HHHHHHHHHHhh-c-----CcchHHHHHH
Q psy8250         160 T-VDTLTVH-EHMTLMARLKMD-R-----NLHHVERART  190 (212)
Q Consensus       160 ~-lD~~~~~-~~~~~l~~l~~~-~-----~~h~~~~~~~  190 (212)
                      + ||+..+. .+.++|.+++++ .     .+|+.+.+..
T Consensus       150 ~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~  188 (204)
T cd03240         150 TNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA  188 (204)
T ss_pred             cccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh
Confidence            9 9999999 999999999764 2     3799876643

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.95  E-value=6.6e-27  Score=231.05  Aligned_cols=198  Identities=21%  Similarity=0.209  Sum_probs=140.6

Q ss_pred             ceeeeeEEEEcCCcEEEEECCCCccHHHHHH---------HHHcCCCCCCc---e----EEEECCEeCCc--c-------
Q psy8250          12 NYKESLSGIAESGSLLAIMGPSGAGKTTLLA---------CISQRIQGDVD---G----QILLNGLEVEK--N-------   66 (212)
Q Consensus        12 ~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~---------~i~g~~~p~~~---G----~I~~~g~~~~~--~-------   66 (212)
                      ..|+++||+|++|++++|.|+||||||||++         .+.|...+...   +    -|.++..++..  .       
T Consensus       609 ~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~idQspigr~~rS~~atY~  688 (1809)
T PRK00635        609 HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHITRDLPGRSQRSIPLTYI  688 (1809)
T ss_pred             CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEecCCCCCCCCCCCceeeh
Confidence            4799999999999999999999999999999         55553222000   1    12333332210  0       


Q ss_pred             ----ccc---------ce-----EEEEcCC------------------C--------------------CCCCCCCHHHH
Q psy8250          67 ----LMV---------KV-----SGFVPQH------------------D--------------------LTVDTLTVHEH   90 (212)
Q Consensus        67 ----~~~---------~~-----i~~v~Q~------------------~--------------------~~~~~ltv~e~   90 (212)
                          .++         +.     ..|.|+.                  +                    ..+...||.|+
T Consensus       689 g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~~e~L~~~~~~~tI~ev  768 (1809)
T PRK00635        689 KAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFLPQVLEVRYKGKNIADI  768 (1809)
T ss_pred             hhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccCHHHHhhccCCCCHHHH
Confidence                000         00     1122221                  0                    14567899999


Q ss_pred             HHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccc-cCCCCCCCChHHHHHHHHHHHHh---hCCCeEEecCCCC-CChhh
Q psy8250          91 MTLMARLKMDRNLHHVERARTVDALLKELGLLKC-KNSVLNVLSGGERKRVALAVQTI---IVQSGFVPQHDLT-VDTLT  165 (212)
Q Consensus        91 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~~LSgGqrqRv~lA~al~---~~p~llilDEPt~-lD~~~  165 (212)
                      +.+...-.........+..+++ ++|+.+|+.+. .++++.+|||||+||++||+||+   .+|+++||||||+ ||+.+
T Consensus       769 L~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~  847 (1809)
T PRK00635        769 LEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHD  847 (1809)
T ss_pred             HHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHH
Confidence            9886542211112233445556 58899999876 79999999999999999999998   5999999999999 99999


Q ss_pred             HHHHHHHHHHHHhhc-----CcchHHHHHHHH--HHHH------hcCeeecCCchhhh
Q psy8250         166 VHEHMTLMARLKMDR-----NLHHVERARTVD--ALLK------ELGLLKCRPADELN  210 (212)
Q Consensus       166 ~~~~~~~l~~l~~~~-----~~h~~~~~~~~~--~~l~------~g~~~~~~~~~~~~  210 (212)
                      .+.++++|++++++.     .+|+++.+...+  ..|.      .|++++.|+++++.
T Consensus       848 ~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~  905 (1809)
T PRK00635        848 IKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEELI  905 (1809)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHHHH
Confidence            999999999998654     269999874333  3564      68899999998874

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.95  E-value=3.7e-27  Score=212.53  Aligned_cols=157  Identities=24%  Similarity=0.229  Sum_probs=128.9

Q ss_pred             cccccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCC
Q psy8250           2 ETFHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL   80 (212)
Q Consensus         2 ~~l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~   80 (212)
                      +|++..-+ +...+++++|++++|+.+-|.||||||||||+|+|+|+-+. -+|+|.+-        ....+-|+||.|.
T Consensus       396 ~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~-g~G~I~~P--------~~~~~lflpQ~PY  466 (604)
T COG4178         396 ENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPW-GSGRISMP--------ADSALLFLPQRPY  466 (604)
T ss_pred             eeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCcc-CCCceecC--------CCCceEEecCCCC
Confidence            56666553 46789999999999999999999999999999999999876 58887653        1123679999999


Q ss_pred             CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCC------CCCCCChHHHHHHHHHHHHhhCCCeEE
Q psy8250          81 TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNS------VLNVLSGGERKRVALAVQTIIVQSGFV  154 (212)
Q Consensus        81 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~------~~~~LSgGqrqRv~lA~al~~~p~lli  154 (212)
                      +... |.+|-+.++....   .    -..+.+.++|.++||.++.++      --..||+|||||+++||.|+++|++++
T Consensus       467 ~p~G-tLre~l~YP~~~~---~----~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~  538 (604)
T COG4178         467 LPQG-TLREALCYPNAAP---D----FSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVF  538 (604)
T ss_pred             CCCc-cHHHHHhCCCCCC---C----CChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEE
Confidence            8777 9999888754321   1    234567889999999765433      234799999999999999999999999


Q ss_pred             ecCCCC-CChhhHHHHHHHHHH
Q psy8250         155 PQHDLT-VDTLTVHEHMTLMAR  175 (212)
Q Consensus       155 lDEPt~-lD~~~~~~~~~~l~~  175 (212)
                      |||.|+ ||+.+...+++++++
T Consensus       539 LDEATsALDe~~e~~l~q~l~~  560 (604)
T COG4178         539 LDEATSALDEETEDRLYQLLKE  560 (604)
T ss_pred             EecchhccChHHHHHHHHHHHh
Confidence            999999 999999999999977

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.94  E-value=9.6e-27  Score=201.51  Aligned_cols=167  Identities=21%  Similarity=0.240  Sum_probs=130.0

Q ss_pred             ccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCC
Q psy8250           3 TFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTV   82 (212)
Q Consensus         3 ~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~   82 (212)
                      +++|.||+. -|+-=.-+|..||++|++||||-||||+.++|+|.+.| ++|+    ..+       -.++|-||.-..-
T Consensus       347 ~~~k~~g~F-~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikP-deg~----~~~-------~~vSyKPQyI~~~  413 (591)
T COG1245         347 DLKKTYGDF-KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKP-DEGS----EED-------LKVSYKPQYISPD  413 (591)
T ss_pred             hheeecCce-EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccC-CCCC----Ccc-------ceEeecceeecCC
Confidence            345556543 23444455677899999999999999999999999999 5887    111       1378999975555


Q ss_pred             CCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-C
Q psy8250          83 DTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-V  161 (212)
Q Consensus        83 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-l  161 (212)
                      ...||.+.+.-.......       ......++++-+.+++..++++.+|||||.|||+||.||.+++++++||||++ |
T Consensus       414 ~~gtV~~~l~~~~~~~~~-------~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~L  486 (591)
T COG1245         414 YDGTVEDLLRSAIRSAFG-------SSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYL  486 (591)
T ss_pred             CCCcHHHHHHHhhhhhcc-------cchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhc
Confidence            677999887654332111       11233567888999999999999999999999999999999999999999999 9


Q ss_pred             ChhhHHHHHHHHHHHHhhcC------cchHHHHH
Q psy8250         162 DTLTVHEHMTLMARLKMDRN------LHHVERAR  189 (212)
Q Consensus       162 D~~~~~~~~~~l~~l~~~~~------~h~~~~~~  189 (212)
                      |...+-.+...|+++.....      -||+..+-
T Consensus       487 DvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~d  520 (591)
T COG1245         487 DVEQRIIVAKVIRRFIENNEKTALVVDHDIYMID  520 (591)
T ss_pred             cHHHHHHHHHHHHHHHhhcCceEEEEecceehhh
Confidence            99999999999999987532      48876653

>KOG0927|consensus

Probab=99.94  E-value=1.9e-26  Score=202.93  Aligned_cols=203  Identities=20%  Similarity=0.195  Sum_probs=134.6

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEE--EECCEeCCcccccceEEEEcC-
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQI--LLNGLEVEKNLMVKVSGFVPQ-   77 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I--~~~g~~~~~~~~~~~i~~v~Q-   77 (212)
                      ++++++.|.+..+++|++|++.+|+.|||+|||||||||+|++|.|-..| ..-.+  +.-.+++.... .+.+-++.+ 
T Consensus        78 ~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P-~p~~~d~y~ls~e~~ps~-~~av~~v~~~  155 (614)
T KOG0927|consen   78 IESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVP-IPEHIDFYLLSREIEPSE-KQAVQAVVME  155 (614)
T ss_pred             eeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCC-CCcccchhhhcccCCCch-HHHHHHHhhh
Confidence            46889999999999999999999999999999999999999999998877 33333  22223332110 000111110 


Q ss_pred             ---CC----------CCC-CCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCC-ccccCCCCCCCChHHHHHHHH
Q psy8250          78 ---HD----------LTV-DTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGL-LKCKNSVLNVLSGGERKRVAL  142 (212)
Q Consensus        78 ---~~----------~~~-~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-~~~~~~~~~~LSgGqrqRv~l  142 (212)
                         ..          ... +...-.+....+.+..   .........++..+|-.+|. .+..++.+.+||||+|.|++|
T Consensus       156 ~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~---~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aL  232 (614)
T KOG0927|consen  156 TDHERKRLEYLAEDLAQACDDKEKDELDELYERLD---EMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAAL  232 (614)
T ss_pred             hHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHH---hhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHH
Confidence               00          000 0000000000000100   11122334456677777776 457889999999999999999


Q ss_pred             HHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c--CcchHHHHHHH---HHHHHhcC-eeecCCchh
Q psy8250         143 AVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R--NLHHVERARTV---DALLKELG-LLKCRPADE  208 (212)
Q Consensus       143 A~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~--~~h~~~~~~~~---~~~l~~g~-~~~~~~~~~  208 (212)
                      ||||..+|++|+|||||+ ||+.+...+.+.|.++..- .  ++|.=+++-.+   ...+++++ +.+.|+-|.
T Consensus       233 Ar~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnydq  306 (614)
T KOG0927|consen  233 ARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYDQ  306 (614)
T ss_pred             HHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhheecccceeeecCCHHH
Confidence            999999999999999999 9999999999999988652 2  25775555443   34455666 566666553

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.94  E-value=1.8e-26  Score=219.37  Aligned_cols=118  Identities=19%  Similarity=0.236  Sum_probs=97.1

Q ss_pred             CCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-ccCCCCCCCChHHHHHHHHHHHHhhCC---CeEEecCCCC
Q psy8250          85 LTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQTIIVQ---SGFVPQHDLT  160 (212)
Q Consensus        85 ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqrqRv~lA~al~~~p---~llilDEPt~  160 (212)
                      +|+.|++.|.....         ......++++.+||.. .+++++.+|||||+||+.||++|+.+|   +++||||||+
T Consensus       792 ltv~E~l~~f~~~~---------~i~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPts  862 (943)
T PRK00349        792 MTVEEALEFFEAIP---------KIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTT  862 (943)
T ss_pred             CcHHHHHHHHHhch---------hhhHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCC
Confidence            67888877754422         1123467899999986 578999999999999999999999999   9999999999


Q ss_pred             -CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHHH--HHH------HhcCeeecCCchhhhc
Q psy8250         161 -VDTLTVHEHMTLMARLKMDR-----NLHHVERARTVD--ALL------KELGLLKCRPADELNR  211 (212)
Q Consensus       161 -lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~~--~~l------~~g~~~~~~~~~~~~~  211 (212)
                       ||+..+..++++|+++++.+     .+|+++.+...+  ..|      ++|++++.|+++++.+
T Consensus       863 GLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~  927 (943)
T PRK00349        863 GLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWIIDLGPEGGDGGGEIVATGTPEEVAK  927 (943)
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEecCCcCCCCCEEEEeCCHHHHHh
Confidence             99999999999999997653     269998876443  357      6899999999998864

>KOG0062|consensus

Probab=99.94  E-value=9.7e-27  Score=203.75  Aligned_cols=179  Identities=19%  Similarity=0.219  Sum_probs=125.5

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCC-C
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQH-D   79 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~-~   79 (212)
                      +.+++..||++.+|.+-++++..|..|||+|+||+|||||||+|+.       |.|.....+  .. .+  --+++-. .
T Consensus        83 ~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~-------~~v~~f~ve--qE-~~--g~~t~~~~~  150 (582)
T KOG0062|consen   83 IDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN-------GQVSGFHVE--QE-VR--GDDTEALQS  150 (582)
T ss_pred             eeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh-------cCcCccCch--hh-ee--ccchHHHhh
Confidence            3578899999999999999999999999999999999999999986       233222211  00 00  0121111 1


Q ss_pred             CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-ccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250          80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD  158 (212)
Q Consensus        80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP  158 (212)
                      .+-.+.++.+.+.--..+.     ......+...++|..+|+++ ...+++.+||||-|.|++|||||..+|+||+||||
T Consensus       151 ~l~~D~~~~dfl~~e~~l~-----~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEP  225 (582)
T KOG0062|consen  151 VLESDTERLDFLAEEKELL-----AGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEP  225 (582)
T ss_pred             hhhccHHHHHHHHhhhhhh-----ccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCC
Confidence            1222323333322211111     00012233444899999965 56788899999999999999999999999999999


Q ss_pred             CC-CChhhHHHHHHHHHHHHhhc--CcchHHHHHHH-HHHHH
Q psy8250         159 LT-VDTLTVHEHMTLMARLKMDR--NLHHVERARTV-DALLK  196 (212)
Q Consensus       159 t~-lD~~~~~~~~~~l~~l~~~~--~~h~~~~~~~~-~~~l~  196 (212)
                      |+ ||..+...+.+.|..+....  ++||-.+.-.+ ..++|
T Consensus       226 TNhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn~V~tdIIH  267 (582)
T KOG0062|consen  226 TNHLDVVAVAWLENYLQTWKITSLIVSHDRNFLNTVCTDIIH  267 (582)
T ss_pred             cccchhHHHHHHHHHHhhCCceEEEEeccHHHHHHHHHHHHH
Confidence            99 99999999999999887332  37998877654 35665

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.93  E-value=2.8e-26  Score=195.85  Aligned_cols=188  Identities=20%  Similarity=0.195  Sum_probs=142.2

Q ss_pred             CcccccccCCc-ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEEEc
Q psy8250           1 METFHPLFGDT-NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGFVP   76 (212)
Q Consensus         1 ~~~l~~~~~~~-~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~v~   76 (212)
                      ++++++.|... .-+..||++|++||++-|+|.||||||||+++++|++.| ++|+|.+||++++..   +.|+.++-||
T Consensus       325 lrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~P-qsG~I~ldg~pV~~e~ledYR~LfSavF  403 (546)
T COG4615         325 LRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQP-QSGEILLDGKPVSAEQLEDYRKLFSAVF  403 (546)
T ss_pred             eeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCC-CCCceeECCccCCCCCHHHHHHHHHHHh
Confidence            35777888654 567899999999999999999999999999999999999 699999999999754   3566667777


Q ss_pred             CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccc---cCCC--CCCCChHHHHHHHHHHHHhhCCC
Q psy8250          77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKC---KNSV--LNVLSGGERKRVALAVQTIIVQS  151 (212)
Q Consensus        77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~---~~~~--~~~LSgGqrqRv~lA~al~~~p~  151 (212)
                      .+..+|+.+--            ...   ....+.++.+|+++.+.+.   .+..  .-.||.|||+|+++-.|++-+-+
T Consensus       404 sDyhLF~~ll~------------~e~---~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~  468 (546)
T COG4615         404 SDYHLFDQLLG------------PEG---KASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERD  468 (546)
T ss_pred             hhHhhhHhhhC------------Ccc---CCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCC
Confidence            76666553111            111   1234567788888877643   3333  34799999999999999999999


Q ss_pred             eEEecCCCC-CChhhHHHHHHH-HHHHHhhcC-----cchHHHHHHHHH--HHHhcCeeecC
Q psy8250         152 GFVPQHDLT-VDTLTVHEHMTL-MARLKMDRN-----LHHVERARTVDA--LLKELGLLKCR  204 (212)
Q Consensus       152 llilDEPt~-lD~~~~~~~~~~-l~~l~~~~~-----~h~~~~~~~~~~--~l~~g~~~~~~  204 (212)
                      |+++||=-+ -||.-++.+++. |-.+++++.     +||..--.-.++  -+.+|++++.-
T Consensus       469 Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~t  530 (546)
T COG4615         469 ILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSELT  530 (546)
T ss_pred             eEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeecc
Confidence            999999999 999999999865 455676653     687532222243  56699986544

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.93  E-value=3.8e-25  Score=193.36  Aligned_cols=208  Identities=19%  Similarity=0.213  Sum_probs=170.3

Q ss_pred             cccccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeC-C---ccc-ccceEEEE
Q psy8250           2 ETFHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV-E---KNL-MVKVSGFV   75 (212)
Q Consensus         2 ~~l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~-~---~~~-~~~~i~~v   75 (212)
                      ++++..-. +...+++|||++.+||++||.|-.|-|-+.|+.+|+|+..+ .+|+|.++|+++ .   ... .+..++||
T Consensus       261 ~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~-~~G~I~l~G~~v~~~~~~~~~r~~G~~~V  339 (501)
T COG3845         261 EDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKP-ASGRILLNGKDVLGRLSPRERRRLGLAYV  339 (501)
T ss_pred             eeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCcc-CCceEEECCEeccccCCHHHHHhcCCccC
Confidence            34555442 24689999999999999999999999999999999999887 579999999997 2   222 33468999


Q ss_pred             cCCC---CCCCCCCHHHHHHHHHhhh----cccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHHHh
Q psy8250          76 PQHD---LTVDTLTVHEHMTLMARLK----MDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQTI  147 (212)
Q Consensus        76 ~Q~~---~~~~~ltv~e~l~~~~~~~----~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~al~  147 (212)
                      |.+.   .+.+.+|+.||+.+.....    ....+...+..+.+.++++++++. .....++.+||||++||+-+||-|.
T Consensus       340 PedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~  419 (501)
T COG3845         340 PEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELA  419 (501)
T ss_pred             ChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhc
Confidence            9985   5788999999998855421    111245567778899999999986 4456778999999999999999999


Q ss_pred             hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhcC-----cchHHHHHHH---HHHHHhcCeeecCCchhhh
Q psy8250         148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDRN-----LHHVERARTV---DALLKELGLLKCRPADELN  210 (212)
Q Consensus       148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~~-----~h~~~~~~~~---~~~l~~g~~~~~~~~~~~~  210 (212)
                      .+|++||+.+||- ||.-+.+.+.+.|.+.++.+.     +-|++++...   ..+|++|+++...++++..
T Consensus       420 ~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~~~t  491 (501)
T COG3845         420 RRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEEAT  491 (501)
T ss_pred             cCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecccccccCC
Confidence            9999999999999 999999999999999988752     6777777553   3589999999888877643

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.93  E-value=2e-25  Score=179.12  Aligned_cols=159  Identities=14%  Similarity=0.107  Sum_probs=113.7

Q ss_pred             CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeC----CcccccceEEEEcCCCCCCCCC
Q psy8250          10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV----EKNLMVKVSGFVPQHDLTVDTL   85 (212)
Q Consensus        10 ~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~----~~~~~~~~i~~v~Q~~~~~~~l   85 (212)
                      +...++++++++.+| +.+|+||||||||||+.+|.-.+.. ... ....|...    ........+.+.+++..++++ 
T Consensus         8 nfr~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~-~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~-   83 (198)
T cd03276           8 NFMCHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGG-KAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN-   83 (198)
T ss_pred             CccceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcC-Ccc-cccccccHHHHhhCCCCeEEEEEEEEcCCccCC-
Confidence            344567888998888 8899999999999999999743322 111 11112211    111123457888887765541 


Q ss_pred             CHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHH----hhCCCeEEecCCCC-
Q psy8250          86 TVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQT----IIVQSGFVPQHDLT-  160 (212)
Q Consensus        86 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al----~~~p~llilDEPt~-  160 (212)
                                ..       .......+.++++.   ....++++.+||+|||||++||+|+    +.+|+++||||||+ 
T Consensus        84 ----------~~-------~~~~~~~~~~~l~~---~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~g  143 (198)
T cd03276          84 ----------PL-------CVLSQDMARSFLTS---NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVF  143 (198)
T ss_pred             ----------cC-------CHHHHHHHHHHhcc---ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccc
Confidence                      00       11123456677776   6667889999999999999999999    58999999999999 


Q ss_pred             CChhhHHHHHHHHHHHHhh--c------CcchHHHHHHHH
Q psy8250         161 VDTLTVHEHMTLMARLKMD--R------NLHHVERARTVD  192 (212)
Q Consensus       161 lD~~~~~~~~~~l~~l~~~--~------~~h~~~~~~~~~  192 (212)
                      +|+..+..+.++|.++..+  .      .+|+++.+...+
T Consensus       144 lD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d  183 (198)
T cd03276         144 MDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSD  183 (198)
T ss_pred             cCHHHHHHHHHHHHHHHhcCCCcEEEEEECCccccccccc
Confidence            9999999999999997543  1      269998886543

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>KOG0065|consensus

Probab=99.92  E-value=1.1e-25  Score=214.29  Aligned_cols=200  Identities=27%  Similarity=0.383  Sum_probs=163.9

Q ss_pred             cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCC--CceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHH
Q psy8250          11 TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD--VDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVH   88 (212)
Q Consensus        11 ~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~--~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~   88 (212)
                      ..+++|+|+-+++|+++.++||.||||||||++++|.....  ..|+|.+||.+.+....++.++|.+|+...++.|||+
T Consensus       128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr  207 (1391)
T KOG0065|consen  128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR  207 (1391)
T ss_pred             ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence            36999999999999999999999999999999999987531  3679999999987654477899999999999999999


Q ss_pred             HHHHHHHhhhcccC----CCHHHHHH-HHHHHHHHcCCccccCCCC-----CCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250          89 EHMTLMARLKMDRN----LHHVERAR-TVDALLKELGLLKCKNSVL-----NVLSGGERKRVALAVQTIIVQSGFVPQHD  158 (212)
Q Consensus        89 e~l~~~~~~~~~~~----~~~~~~~~-~~~~~l~~~gl~~~~~~~~-----~~LSgGqrqRv~lA~al~~~p~llilDEP  158 (212)
                      |.+.|.+++.....    ..+.+... ..+.+++.+|++++.+..+     +..|||||+||.+|-+++.+|++++.||+
T Consensus       208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~  287 (1391)
T KOG0065|consen  208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEI  287 (1391)
T ss_pred             ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecc
Confidence            99999998765421    22222221 4678999999998877665     57999999999999999999999999999


Q ss_pred             CC-CChhhHHHHHHHHHHHHhhcC------cchH-HHH-HHHH--HHHHhcCeeecCCchhhh
Q psy8250         159 LT-VDTLTVHEHMTLMARLKMDRN------LHHV-ERA-RTVD--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       159 t~-lD~~~~~~~~~~l~~l~~~~~------~h~~-~~~-~~~~--~~l~~g~~~~~~~~~~~~  210 (212)
                      |+ ||..+.-++.+.|+++.....      .++. .++ .-.+  .+|.+|+++++||.|++-
T Consensus       288 t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~  350 (1391)
T KOG0065|consen  288 TRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVL  350 (1391)
T ss_pred             cccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHH
Confidence            99 999999999999999875422      2332 122 1223  478899999999999864

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.92  E-value=6.6e-26  Score=179.88  Aligned_cols=205  Identities=17%  Similarity=0.201  Sum_probs=147.9

Q ss_pred             ccccccc----CCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEE-----EECCEeCC---ccccc
Q psy8250           2 ETFHPLF----GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQI-----LLNGLEVE---KNLMV   69 (212)
Q Consensus         2 ~~l~~~~----~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I-----~~~g~~~~---~~~~~   69 (212)
                      .+++..+    |...+++++|+++.+||+-|++|+||||||-..|+|+|....  .-.|     .|++.++-   .+.++
T Consensus         7 rnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kd--nW~vTADR~Rf~~idLL~L~Pr~RR   84 (330)
T COG4170           7 RNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKD--NWRVTADRMRFDDIDLLRLSPRERR   84 (330)
T ss_pred             cceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhccccc--ceEEEhhhcccccchhhcCChHHhh
Confidence            3455544    345699999999999999999999999999999999998763  3444     45554442   22223


Q ss_pred             ----ceEEEEcCCCCCC--CCCCHHHHHHHH--Hhhhcc---cCCCHHHHHHHHHHHHHHcCCcc---ccCCCCCCCChH
Q psy8250          70 ----KVSGFVPQHDLTV--DTLTVHEHMTLM--ARLKMD---RNLHHVERARTVDALLKELGLLK---CKNSVLNVLSGG  135 (212)
Q Consensus        70 ----~~i~~v~Q~~~~~--~~ltv~e~l~~~--~~~~~~---~~~~~~~~~~~~~~~l~~~gl~~---~~~~~~~~LSgG  135 (212)
                          +.|+++||+|...  |..++...+.-.  .+.+..   ..+.  =.++++-++|.++|+.+   ....++.+|.-|
T Consensus        85 k~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~--WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeG  162 (330)
T COG4170          85 KLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFG--WRKRRAIELLHRVGIKDHKDIMRSYPYELTEG  162 (330)
T ss_pred             hhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhc--hhHHHHHHHHHHhccccHHHHHHhCcchhccC
Confidence                4578999998643  333332222110  010000   0011  13456788999999964   467789999999


Q ss_pred             HHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhcC------cchHHHHHHHHH---HHHhcCeeecCC
Q psy8250         136 ERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDRN------LHHVERARTVDA---LLKELGLLKCRP  205 (212)
Q Consensus       136 qrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~~------~h~~~~~~~~~~---~l~~g~~~~~~~  205 (212)
                      |-|+|+||.|++.+|++||.||||+ +++.++.+++.+|.++++..+      +||+..+.+.+.   +|+=|.-+..++
T Consensus       163 E~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ESa~  242 (330)
T COG4170         163 ECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAP  242 (330)
T ss_pred             cceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccccc
Confidence            9999999999999999999999999 999999999999999987643      599988776532   566666666666


Q ss_pred             chhhh
Q psy8250         206 ADELN  210 (212)
Q Consensus       206 ~~~~~  210 (212)
                      .+++-
T Consensus       243 ~e~l~  247 (330)
T COG4170         243 SEELV  247 (330)
T ss_pred             hhHHh
Confidence            66654

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.92  E-value=1.1e-24  Score=206.95  Aligned_cols=99  Identities=20%  Similarity=0.219  Sum_probs=85.5

Q ss_pred             HHHHHHHHcCCcc-ccCCCCCCCChHHHHHHHHHHHHhh---CCCeEEecCCCC-CChhhHHHHHHHHHHHHhhcC----
Q psy8250         111 TVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQTII---VQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDRN----  181 (212)
Q Consensus       111 ~~~~~l~~~gl~~-~~~~~~~~LSgGqrqRv~lA~al~~---~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~~----  181 (212)
                      +..++|+.+||.. ..++++.+|||||+||+.||++|+.   +|+++||||||+ ||+.....++++|+++++++.    
T Consensus       807 ~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIv  886 (924)
T TIGR00630       807 RKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVV  886 (924)
T ss_pred             HHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence            3457889999976 4789999999999999999999997   599999999999 999999999999999976542    


Q ss_pred             -cchHHHHHHHH--HHH------HhcCeeecCCchhh
Q psy8250         182 -LHHVERARTVD--ALL------KELGLLKCRPADEL  209 (212)
Q Consensus       182 -~h~~~~~~~~~--~~l------~~g~~~~~~~~~~~  209 (212)
                       +|+++.+...+  ..|      ++|++++.|+++++
T Consensus       887 i~H~~~~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l  923 (924)
T TIGR00630       887 IEHNLDVIKTADYIIDLGPEGGDGGGTIVASGTPEEV  923 (924)
T ss_pred             EeCCHHHHHhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence             69998876543  357      68999999999886

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0066|consensus

Probab=99.90  E-value=6.2e-24  Score=183.74  Aligned_cols=168  Identities=21%  Similarity=0.225  Sum_probs=133.8

Q ss_pred             ccccccc-CCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCC-
Q psy8250           2 ETFHPLF-GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHD-   79 (212)
Q Consensus         2 ~~l~~~~-~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~-   79 (212)
                      -++++.| |.++++++++|-|.--..++|+||||.||||||+++.|-+.| ..|+..-+        .+-+||+.-|+. 
T Consensus       590 H~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P-~~GE~RKn--------hrL~iG~FdQh~~  660 (807)
T KOG0066|consen  590 HDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDP-NDGELRKN--------HRLRIGWFDQHAN  660 (807)
T ss_pred             ccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCC-Ccchhhcc--------ceeeeechhhhhH
Confidence            4788889 667899999999999999999999999999999999999999 58876543        233589888864 


Q ss_pred             -CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCC-CCCCCChHHHHHHHHHHHHhhCCCeEEecC
Q psy8250          80 -LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNS-VLNVLSGGERKRVALAVQTIIVQSGFVPQH  157 (212)
Q Consensus        80 -~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~LSgGqrqRv~lA~al~~~p~llilDE  157 (212)
                       .+....|..|++.-.+.      +++    ..+...|-.+||...++. .+..|||||+-||++|---+..|++|||||
T Consensus       661 E~L~~Eetp~EyLqr~FN------lpy----q~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDE  730 (807)
T KOG0066|consen  661 EALNGEETPVEYLQRKFN------LPY----QEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDE  730 (807)
T ss_pred             HhhccccCHHHHHHHhcC------CCh----HHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecC
Confidence             34555677776653322      232    335567888999765554 578999999999999988899999999999


Q ss_pred             CCC-CChhhHHHHHHHHHHHHhh--cCcchHHHH
Q psy8250         158 DLT-VDTLTVHEHMTLMARLKMD--RNLHHVERA  188 (212)
Q Consensus       158 Pt~-lD~~~~~~~~~~l~~l~~~--~~~h~~~~~  188 (212)
                      ||+ ||..+...+-+.|+++.--  .++||...+
T Consensus       731 PTNNLDIESIDALaEAIney~GgVi~VsHDeRLi  764 (807)
T KOG0066|consen  731 PTNNLDIESIDALAEAINEYNGGVIMVSHDERLI  764 (807)
T ss_pred             CCCCcchhhHHHHHHHHHhccCcEEEEeccccee
Confidence            999 9999999999999998642  236886544

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.89  E-value=3.7e-24  Score=177.26  Aligned_cols=166  Identities=17%  Similarity=0.164  Sum_probs=105.6

Q ss_pred             EEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEe-C-Ccc------cccce--EEEEcCCCCC-CCCCCH
Q psy8250          19 GIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLE-V-EKN------LMVKV--SGFVPQHDLT-VDTLTV   87 (212)
Q Consensus        19 ~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~-~-~~~------~~~~~--i~~v~Q~~~~-~~~ltv   87 (212)
                      +...++ +++|+||||||||||+.+|++.+.+ ..|++...+.. + ...      .....  +.|..|++.. ....++
T Consensus        18 ~~~~~~-~~~i~G~NGsGKStll~ai~~~l~~-~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~   95 (247)
T cd03275          18 IGPFDR-FTCIIGPNGSGKSNLMDAISFVLGE-KSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRII   95 (247)
T ss_pred             ecCCCC-eEEEECCCCCCHHHHHHHHHHHhCC-CcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEE
Confidence            333444 9999999999999999999998876 46776544321 1 100      00122  3344443221 001111


Q ss_pred             HHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccc----------------------cCCCCCCCChHHHHHHHHHHH
Q psy8250          88 HEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKC----------------------KNSVLNVLSGGERKRVALAVQ  145 (212)
Q Consensus        88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------------------~~~~~~~LSgGqrqRv~lA~a  145 (212)
                      .+...   .+..+ +  .......+.++++.+|+...                      .++++.+||+|||||++||+|
T Consensus        96 ~~~~~---~~~in-g--k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~a  169 (247)
T cd03275          96 TGGSS---SYRIN-G--KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALL  169 (247)
T ss_pred             ECCce---EEEEC-C--EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHH
Confidence            11100   00100 1  01123345688888888421                      123458999999999999999


Q ss_pred             HhhC----CCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHHH
Q psy8250         146 TIIV----QSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTVD  192 (212)
Q Consensus       146 l~~~----p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~~  192 (212)
                      ++.+    |+++||||||+ ||+.....+.++|.+++++.     .+|+.+....++
T Consensus       170 l~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d  226 (247)
T cd03275         170 FAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKAD  226 (247)
T ss_pred             HHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCC
Confidence            9975    89999999999 99999999999999997643     379977654333

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>KOG0060|consensus

Probab=99.89  E-value=5.4e-23  Score=182.43  Aligned_cols=176  Identities=20%  Similarity=0.126  Sum_probs=130.1

Q ss_pred             CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHH
Q psy8250          10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHE   89 (212)
Q Consensus        10 ~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e   89 (212)
                      +..+.+|+||+|++|+.+.|.||||||||+|+|+++|+-+- .+|.+..-.+.-.     +.+-|+||.|.+... |.++
T Consensus       447 g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~-~~G~l~k~~~~~~-----~~lfflPQrPYmt~G-TLRd  519 (659)
T KOG0060|consen  447 GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPS-TGGKLTKPTDGGP-----KDLFFLPQRPYMTLG-TLRD  519 (659)
T ss_pred             CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhccccc-CCCeEEecccCCC-----CceEEecCCCCcccc-chhh
Confidence            45678999999999999999999999999999999998876 5898876433211     347899999987666 9999


Q ss_pred             HHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCC-----------CCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250          90 HMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNS-----------VLNVLSGGERKRVALAVQTIIVQSGFVPQHD  158 (212)
Q Consensus        90 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGqrqRv~lA~al~~~p~llilDEP  158 (212)
                      .+.++..--..  ..+....+++..+|+.++|.+...+           -...||+||+||++.||-+.++|++-||||-
T Consensus       520 QvIYP~~~~~~--~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~  597 (659)
T KOG0060|consen  520 QVIYPLKAEDM--DSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDEC  597 (659)
T ss_pred             eeeccCccccc--cccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeech
Confidence            99886431111  1111234456677777766553322           1257999999999999999999999999999


Q ss_pred             CC-CChhhHHHHHHHHHHHHhhc--CcchHHHHHHHHHH
Q psy8250         159 LT-VDTLTVHEHMTLMARLKMDR--NLHHVERARTVDAL  194 (212)
Q Consensus       159 t~-lD~~~~~~~~~~l~~l~~~~--~~h~~~~~~~~~~~  194 (212)
                      || +|......+.+.+++.....  +.|--..-+-++.+
T Consensus       598 TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~kfHd~~  636 (659)
T KOG0060|consen  598 TSAVTEDVEGALYRKCREMGITFISVGHRKSLWKFHDYV  636 (659)
T ss_pred             hhhccHHHHHHHHHHHHHcCCeEEEeccHHHHHhhhhEE
Confidence            99 99999999998887765432  23544333333433

>KOG0062|consensus

Probab=99.88  E-value=3.7e-23  Score=181.37  Aligned_cols=183  Identities=17%  Similarity=0.175  Sum_probs=141.5

Q ss_pred             ccccccCCc--ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCC
Q psy8250           3 TFHPLFGDT--NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL   80 (212)
Q Consensus         3 ~l~~~~~~~--~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~   80 (212)
                      .+++.|...  +.+.+++++++.-+.++++|+||+||||++|++.|-..| ..|.+.+.+        +.+++|-+|.-.
T Consensus       367 ~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~-~rgi~~~~~--------r~ri~~f~Qhhv  437 (582)
T KOG0062|consen  367 YVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTP-TRGIVGRHP--------RLRIKYFAQHHV  437 (582)
T ss_pred             eeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCc-ccceeeecc--------cceecchhHhhh
Confidence            456667543  589999999999999999999999999999999998888 589887753        446899999754


Q ss_pred             CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCC
Q psy8250          81 TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDL  159 (212)
Q Consensus        81 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt  159 (212)
                      -+..+.|.+. .+....+  .+.    .++.+..-+..||++ +.....+..||||||-||++|.....+|-+|+|||||
T Consensus       438 d~l~~~v~~v-d~~~~~~--pG~----~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPT  510 (582)
T KOG0062|consen  438 DFLDKNVNAV-DFMEKSF--PGK----TEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPT  510 (582)
T ss_pred             hHHHHHhHHH-HHHHHhC--CCC----CHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCC
Confidence            4434344332 2222222  122    245567889999996 4566678999999999999999999999999999999


Q ss_pred             C-CChhhHHHHHHHHHHHHhh--cCcchHHHHHHHHH---HHHhcCee
Q psy8250         160 T-VDTLTVHEHMTLMARLKMD--RNLHHVERARTVDA---LLKELGLL  201 (212)
Q Consensus       160 ~-lD~~~~~~~~~~l~~l~~~--~~~h~~~~~~~~~~---~l~~g~~~  201 (212)
                      + ||..+...+.+.|+.+.--  .++||.+++...+.   ++.+|++.
T Consensus       511 NhLD~dsl~AL~~Al~~F~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt  558 (582)
T KOG0062|consen  511 NHLDRDSLGALAKALKNFNGGVVLVSHDEEFISSLCKELWVVEDGKVT  558 (582)
T ss_pred             ccccHHHHHHHHHHHHhcCCcEEEEECcHHHHhhcCceeEEEcCCcEE
Confidence            9 9999999999999888632  24899998876542   56677763

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.88  E-value=4.8e-23  Score=178.67  Aligned_cols=154  Identities=21%  Similarity=0.289  Sum_probs=112.0

Q ss_pred             EcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccc------------cc----c--eEEEEcCC----
Q psy8250          21 AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL------------MV----K--VSGFVPQH----   78 (212)
Q Consensus        21 i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~------------~~----~--~i~~v~Q~----   78 (212)
                      ..+|+++||+||||-||||.+|+|+|.+.|. =|+  .++.+-+..-            ++    .  ++..-+|-    
T Consensus        97 pr~G~V~GilG~NGiGKsTalkILaGel~PN-LG~--~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~i  173 (591)
T COG1245          97 PRPGKVVGILGPNGIGKSTALKILAGELKPN-LGR--YEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLI  173 (591)
T ss_pred             CCCCcEEEEEcCCCccHHHHHHHHhCccccC-CCC--CCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHH
Confidence            4789999999999999999999999999984 554  2332211100            00    0  11112221    


Q ss_pred             CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250          79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD  158 (212)
Q Consensus        79 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP  158 (212)
                      |..+-. +|.|-+.-            ....-..+++.+.++|.+.+++.+++|||||.||++||.|++++.+++++|||
T Consensus       174 Pk~~KG-~v~elLk~------------~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEp  240 (591)
T COG1245         174 PKVVKG-KVGELLKK------------VDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEP  240 (591)
T ss_pred             HHHhcc-hHHHHHHh------------hhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCC
Confidence            222222 34433221            11123578899999999999999999999999999999999999999999999


Q ss_pred             CC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHH
Q psy8250         159 LT-VDTLTVHEHMTLMARLKMDR-----NLHHVERART  190 (212)
Q Consensus       159 t~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~  190 (212)
                      +| ||...+-....+++++.+..     +.||+...-.
T Consensus       241 sSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~  278 (591)
T COG1245         241 SSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDY  278 (591)
T ss_pred             cccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHH
Confidence            99 99999999999999998752     2599776533

>KOG2355|consensus

Probab=99.87  E-value=2.1e-22  Score=159.31  Aligned_cols=188  Identities=16%  Similarity=0.151  Sum_probs=137.0

Q ss_pred             cccccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc--------------
Q psy8250           2 ETFHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN--------------   66 (212)
Q Consensus         2 ~~l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~--------------   66 (212)
                      .++.+.|. ..+++-|+|++++.|....++|.||||||||||+++|.--. -.|.|.+.|.+.-..              
T Consensus        17 sgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv-~~~~v~VlgrsaFhDt~l~~Sgdl~YLGg   95 (291)
T KOG2355|consen   17 SGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMV-GGGVVQVLGRSAFHDTSLESSGDLSYLGG   95 (291)
T ss_pred             eccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccc-cCCeEEEcCcCccccccccccCceeEecc
Confidence            46778885 45799999999999999999999999999999999997655 468999999764210              


Q ss_pred             cccceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHH
Q psy8250          67 LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQT  146 (212)
Q Consensus        67 ~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al  146 (212)
                      .+.+.+++--.-| +-.++++.+-+ |+..     +.    ...+-+.+++.++++  ...+.+.+|.|||+||.|++.|
T Consensus        96 eW~~~~~~agevp-lq~D~sae~mi-fgV~-----g~----dp~Rre~LI~iLDId--l~WRmHkvSDGqrRRVQicMGL  162 (291)
T KOG2355|consen   96 EWSKTVGIAGEVP-LQGDISAEHMI-FGVG-----GD----DPERREKLIDILDID--LRWRMHKVSDGQRRRVQICMGL  162 (291)
T ss_pred             ccccccccccccc-ccccccHHHHH-hhcc-----CC----ChhHhhhhhhheecc--ceEEEeeccccchhhhHHHHhc
Confidence            1223333222112 22345655433 2221     11    113445677777765  4566789999999999999999


Q ss_pred             hhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhcC------cchHHHHHHH---HHHHHhcCeeec
Q psy8250         147 IIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDRN------LHHVERARTV---DALLKELGLLKC  203 (212)
Q Consensus       147 ~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~~------~h~~~~~~~~---~~~l~~g~~~~~  203 (212)
                      ++.-++|+|||-|. ||..++..+++.+++-.++.+      ||..+-.++.   .+.++.|+++..
T Consensus       163 L~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~  229 (291)
T KOG2355|consen  163 LKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDN  229 (291)
T ss_pred             ccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeec
Confidence            99999999999999 999999999999988776643      6877655553   457778887663

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=99.86  E-value=9.1e-22  Score=158.06  Aligned_cols=139  Identities=12%  Similarity=0.004  Sum_probs=96.9

Q ss_pred             eeeeeEEEEcCCc-EEEEECCCCccHHHHHHHHH--------cCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCC
Q psy8250          13 YKESLSGIAESGS-LLAIMGPSGAGKTTLLACIS--------QRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVD   83 (212)
Q Consensus        13 ~l~~vs~~i~~Ge-~~~iiGpnGaGKSTLl~~i~--------g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~   83 (212)
                      -+.++||++.+|+ +++|.||||||||||+|+|+        |...| ....+              .++|+.|..    
T Consensus        16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp-~~~~~--------------~~~~~~~~~----   76 (200)
T cd03280          16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIP-AAEGS--------------SLPVFENIF----   76 (200)
T ss_pred             ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcc-ccccc--------------cCcCccEEE----
Confidence            3458999999995 79999999999999999998        43333 11000              122322211    


Q ss_pred             CCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CC
Q psy8250          84 TLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VD  162 (212)
Q Consensus        84 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD  162 (212)
                                                       ..++..+..+...+.+|+||+|++.++++ +.+|+++|+|||++ +|
T Consensus        77 ---------------------------------~~lg~~~~l~~~~s~fs~g~~~~~~i~~~-~~~p~llllDEp~~glD  122 (200)
T cd03280          77 ---------------------------------ADIGDEQSIEQSLSTFSSHMKNIARILQH-ADPDSLVLLDELGSGTD  122 (200)
T ss_pred             ---------------------------------EecCchhhhhcCcchHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCC
Confidence                                             01112223445567899999999999987 48999999999999 99


Q ss_pred             hhhHHHHH-HHHHHHHhhc-----CcchHHHHHHHH--HHHHhcCeeecC
Q psy8250         163 TLTVHEHM-TLMARLKMDR-----NLHHVERARTVD--ALLKELGLLKCR  204 (212)
Q Consensus       163 ~~~~~~~~-~~l~~l~~~~-----~~h~~~~~~~~~--~~l~~g~~~~~~  204 (212)
                      +.....++ .+++++++..     .+|+.+....++  ..+++|++..++
T Consensus       123 ~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~~  172 (200)
T cd03280         123 PVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENASMEFDP  172 (200)
T ss_pred             HHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEec
Confidence            99999986 5677776542     378865443333  467788887663

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>KOG0064|consensus

Probab=99.86  E-value=5.1e-22  Score=174.74  Aligned_cols=173  Identities=17%  Similarity=0.165  Sum_probs=124.7

Q ss_pred             CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHH
Q psy8250          10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHE   89 (212)
Q Consensus        10 ~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e   89 (212)
                      +..++..+||+|++|-.+.|+||||||||+|+|+|.|+-+- ..|...+        ....++.|+||.|.+- .-|.+|
T Consensus       494 ~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPv-y~g~L~~--------P~~~~mFYIPQRPYms-~gtlRD  563 (728)
T KOG0064|consen  494 GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPV-YNGLLSI--------PRPNNIFYIPQRPYMS-GGTLRD  563 (728)
T ss_pred             cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcc-cCCeeec--------CCCcceEeccCCCccC-cCcccc
Confidence            34578999999999999999999999999999999998754 4554432        1233489999999876 447787


Q ss_pred             HHHHHHhhhc--ccCCCHHHHHHHHHHHHHHcCCccccCCCC---------CCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250          90 HMTLMARLKM--DRNLHHVERARTVDALLKELGLLKCKNSVL---------NVLSGGERKRVALAVQTIIVQSGFVPQHD  158 (212)
Q Consensus        90 ~l~~~~~~~~--~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGqrqRv~lA~al~~~p~llilDEP  158 (212)
                      .+-++...-.  .+++.    ++....+|..+.+++.+.+-.         ..||||||||+++||.+-++|+.-+|||-
T Consensus       564 QIIYPdS~e~~~~kg~~----d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEc  639 (728)
T KOG0064|consen  564 QIIYPDSSEQMKRKGYT----DQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDEC  639 (728)
T ss_pred             eeecCCcHHHHHhcCCC----HHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhh
Confidence            7765432110  11222    234556666666654443322         46999999999999999999999999999


Q ss_pred             CC-CChhhHHHHHHHHHHHHhh--cCcchHHHHHHHHHHHH
Q psy8250         159 LT-VDTLTVHEHMTLMARLKMD--RNLHHVERARTVDALLK  196 (212)
Q Consensus       159 t~-lD~~~~~~~~~~l~~l~~~--~~~h~~~~~~~~~~~l~  196 (212)
                      || ..+.....+++..+.....  ..+|....-.....++.
T Consensus       640 TsAvsidvE~~i~~~ak~~gi~llsithrpslwk~h~~ll~  680 (728)
T KOG0064|consen  640 TSAVSIDVEGKIFQAAKDAGISLLSITHRPSLWKYHTHLLE  680 (728)
T ss_pred             hcccccchHHHHHHHHHhcCceEEEeecCccHHHHHHHHHh
Confidence            99 8888888888887765432  23677666555555544

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=99.83  E-value=3.2e-20  Score=159.81  Aligned_cols=159  Identities=23%  Similarity=0.257  Sum_probs=122.0

Q ss_pred             cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCC--------CCCCceEEEECCEeCCcccccceEEEEcCC--CC
Q psy8250          11 TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRI--------QGDVDGQILLNGLEVEKNLMVKVSGFVPQH--DL   80 (212)
Q Consensus        11 ~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~--------~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~--~~   80 (212)
                      ..+++||||++++|++++|+|+|||||||+|++|+|..        .| ++|.|.+--..+        .+.+|..  |.
T Consensus       396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p-~sg~v~vp~nt~--------~a~iPge~Ep~  466 (593)
T COG2401         396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRP-DSGKVEVPKNTV--------SALIPGEYEPE  466 (593)
T ss_pred             eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCC-CCCceeccccch--------hhccCcccccc
Confidence            45899999999999999999999999999999999964        35 477766532211        2344443  22


Q ss_pred             CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc--ccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250          81 TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK--CKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD  158 (212)
Q Consensus        81 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~--~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP  158 (212)
                       |..-|+.|.+.--      .+     +...+.++|++.|+.+  +..+++++||.|||.|+.||.++...|.+++.||-
T Consensus       467 -f~~~tilehl~s~------tG-----D~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF  534 (593)
T COG2401         467 -FGEVTILEHLRSK------TG-----DLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEF  534 (593)
T ss_pred             -cCchhHHHHHhhc------cC-----chhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhh
Confidence             2345666654321      11     1223568899999964  45677899999999999999999999999999999


Q ss_pred             CC-CChhhHHHHHHHHHHHHhhc------CcchHHHHHH
Q psy8250         159 LT-VDTLTVHEHMTLMARLKMDR------NLHHVERART  190 (212)
Q Consensus       159 t~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~  190 (212)
                      .+ ||+.+...+..-|.+++++.      .||+.+....
T Consensus       535 ~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~A  573 (593)
T COG2401         535 AAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNA  573 (593)
T ss_pred             hhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhc
Confidence            99 99999999999999998763      3788777654

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=99.83  E-value=1.1e-20  Score=151.68  Aligned_cols=135  Identities=14%  Similarity=0.141  Sum_probs=98.5

Q ss_pred             CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHH
Q psy8250          10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHE   89 (212)
Q Consensus        10 ~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e   89 (212)
                      ++.+++|++++.  |++++|+||||||||||+|+|+|...      +...|.++...      .+++|...+|+.+|+.|
T Consensus        13 ~~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~------l~~~G~~v~a~------~~~~q~~~l~~~~~~~d   78 (199)
T cd03283          13 EKRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI------LAQAGAPVCAS------SFELPPVKIFTSIRVSD   78 (199)
T ss_pred             CCeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH------HHHcCCEEecC------ccCcccceEEEeccchh
Confidence            345777887664  79999999999999999999998542      11345444221      36677677889999999


Q ss_pred             HHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHH
Q psy8250          90 HMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHE  168 (212)
Q Consensus        90 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~  168 (212)
                      |+.+....      ...+ ..++.++++.+++                          .+|+++|+|||++ +|+.....
T Consensus        79 ~l~~~~s~------~~~e-~~~~~~iL~~~~~--------------------------~~p~llllDEp~~glD~~~~~~  125 (199)
T cd03283          79 DLRDGISY------FYAE-LRRLKEIVEKAKK--------------------------GEPVLFLLDEIFKGTNSRERQA  125 (199)
T ss_pred             ccccccCh------HHHH-HHHHHHHHHhccC--------------------------CCCeEEEEecccCCCCHHHHHH
Confidence            99774321      1122 2567888888763                          7999999999999 99999887


Q ss_pred             HH-HHHHHHHhhc-----CcchHHHHHHH
Q psy8250         169 HM-TLMARLKMDR-----NLHHVERARTV  191 (212)
Q Consensus       169 ~~-~~l~~l~~~~-----~~h~~~~~~~~  191 (212)
                      +. .++..+.+..     .||+.+.+...
T Consensus       126 l~~~ll~~l~~~~~tiiivTH~~~~~~~~  154 (199)
T cd03283         126 ASAAVLKFLKNKNTIGIISTHDLELADLL  154 (199)
T ss_pred             HHHHHHHHHHHCCCEEEEEcCcHHHHHhh
Confidence            65 5677776543     37999887553

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.82  E-value=8.9e-20  Score=180.98  Aligned_cols=188  Identities=20%  Similarity=0.132  Sum_probs=135.0

Q ss_pred             eeeeeEEEEcCCcEEEEECCCCccHHHHHHHHH----------cCCCCCCceEEEECCEeCCc--c-----------ccc
Q psy8250          13 YKESLSGIAESGSLLAIMGPSGAGKTTLLACIS----------QRIQGDVDGQILLNGLEVEK--N-----------LMV   69 (212)
Q Consensus        13 ~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~----------g~~~p~~~G~I~~~g~~~~~--~-----------~~~   69 (212)
                      =|+||+.+|+-|.+++|.|.||||||||++-+.          |.. . ..--|.+|..++..  +           .+|
T Consensus      1505 NLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~-~-~~~vi~vdQspIgrt~RS~paTY~g~fd~IR 1582 (1809)
T PRK00635       1505 TIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPS-V-FSEIIFLDSHPQISSQRSDISTYFDIAPSLR 1582 (1809)
T ss_pred             cCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhccccc-c-cCcEEEEeCCCCCCCCCCchhhhhhhHHHHH
Confidence            479999999999999999999999999997544          221 1 23457777766621  0           000


Q ss_pred             ---------ceE-----------------------------EEEcCCC-----------------CCC--------CCCC
Q psy8250          70 ---------KVS-----------------------------GFVPQHD-----------------LTV--------DTLT   86 (212)
Q Consensus        70 ---------~~i-----------------------------~~v~Q~~-----------------~~~--------~~lt   86 (212)
                               +..                             .|++.-.                 .-|        -+||
T Consensus      1583 ~lFA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mt 1662 (1809)
T PRK00635       1583 NFYASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTP 1662 (1809)
T ss_pred             HHHhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCC
Confidence                     000                             1111100                 001        2355


Q ss_pred             HHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-ccCCCCCCCChHHHHHHHHHHHHhhC---CCeEEecCCCC-C
Q psy8250          87 VHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQTIIV---QSGFVPQHDLT-V  161 (212)
Q Consensus        87 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqrqRv~lA~al~~~---p~llilDEPt~-l  161 (212)
                      |.|.+.|+...         ....+.-+.|..+||.. .+.++..+|||||.||+-||..|..+   +.++||||||+ |
T Consensus      1663 v~ea~~~F~~~---------~~i~~~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GL 1733 (1809)
T PRK00635       1663 IEEVAETFPFL---------KKIQKPLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSL 1733 (1809)
T ss_pred             HHHHHHHhhcc---------HHHHHHHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCC
Confidence            55555543210         12334567889999975 47889999999999999999999875   78999999999 9


Q ss_pred             ChhhHHHHHHHHHHHHhhcC-----cchHHHHHHHHHHHH--------hcCeeecCCchhhhc
Q psy8250         162 DTLTVHEHMTLMARLKMDRN-----LHHVERARTVDALLK--------ELGLLKCRPADELNR  211 (212)
Q Consensus       162 D~~~~~~~~~~l~~l~~~~~-----~h~~~~~~~~~~~l~--------~g~~~~~~~~~~~~~  211 (212)
                      ++...+.++++|+++.+.++     .||++.++.++.+++        -|+|++.|+|+++.+
T Consensus      1734 h~~d~~~Ll~~l~~L~~~g~tvivieH~~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635       1734 DNQQKSALLVQLRTLVSLGHSVIYIDHDPALLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred             CHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence            99999999999999988754     499999888665433        567999999999864

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.81  E-value=9.8e-20  Score=147.70  Aligned_cols=67  Identities=10%  Similarity=-0.015  Sum_probs=55.2

Q ss_pred             ccCCCCCCCChHHHHHHHHHHHH----hhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c------CcchHHHHHH
Q psy8250         124 CKNSVLNVLSGGERKRVALAVQT----IIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R------NLHHVERART  190 (212)
Q Consensus       124 ~~~~~~~~LSgGqrqRv~lA~al----~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~------~~h~~~~~~~  190 (212)
                      ..+..+.+||+|||||+.+|++|    +.+|+++|+||||+ +|+..+..++++|.+++.+ .      .+||+.....
T Consensus       119 ~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~  197 (213)
T cd03277         119 LQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLN  197 (213)
T ss_pred             ccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCc
Confidence            45667899999999998877554    57999999999999 9999999999999998765 2      2688765543

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=99.80  E-value=8.2e-19  Score=138.55  Aligned_cols=58  Identities=19%  Similarity=0.122  Sum_probs=51.5

Q ss_pred             CChHHHHHHHHHHHHh----hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHH
Q psy8250         132 LSGGERKRVALAVQTI----IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERAR  189 (212)
Q Consensus       132 LSgGqrqRv~lA~al~----~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~  189 (212)
                      ||+||+||++|||+++    .+|+++|+|||++ +|+.....+.+.|.++....     .+|+.+.+.
T Consensus        95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~  162 (178)
T cd03239          95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFE  162 (178)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh
Confidence            9999999999999997    5899999999999 99999999999999987652     379877654

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.79  E-value=1.7e-19  Score=165.39  Aligned_cols=119  Identities=19%  Similarity=0.263  Sum_probs=96.0

Q ss_pred             CCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-ccCCCCCCCChHHHHHHHHHHHHhhCC---CeEEecCCC
Q psy8250          84 TLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQTIIVQ---SGFVPQHDL  159 (212)
Q Consensus        84 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqrqRv~lA~al~~~p---~llilDEPt  159 (212)
                      +|||.|...|+...         ....+..+.|..+||.. .+.++..+|||||.|||-||.-|..+.   -++||||||
T Consensus       783 ~MTveEA~~FF~~~---------p~I~rkLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPT  853 (935)
T COG0178         783 DMTVEEALEFFEAI---------PKIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPT  853 (935)
T ss_pred             hccHHHHHHHHhcc---------hHHHHHHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCC
Confidence            35666665554321         12334456788889965 478889999999999999999999988   999999999


Q ss_pred             C-CChhhHHHHHHHHHHHHhhcC-----cchHHHHHHHHHHHH--------hcCeeecCCchhhhc
Q psy8250         160 T-VDTLTVHEHMTLMARLKMDRN-----LHHVERARTVDALLK--------ELGLLKCRPADELNR  211 (212)
Q Consensus       160 ~-lD~~~~~~~~~~l~~l~~~~~-----~h~~~~~~~~~~~l~--------~g~~~~~~~~~~~~~  211 (212)
                      + |.....+++++.|.+|...++     .|+++.++.++.+++        -|.+++.|+|+++.+
T Consensus       854 TGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~  919 (935)
T COG0178         854 TGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK  919 (935)
T ss_pred             CCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence            9 999999999999999998765     499999888776654        466999999999864

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=99.79  E-value=9.5e-19  Score=136.09  Aligned_cols=127  Identities=23%  Similarity=0.224  Sum_probs=87.3

Q ss_pred             eeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEE-EEcCCCCCCCCCCHHHHHH
Q psy8250          14 KESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSG-FVPQHDLTVDTLTVHEHMT   92 (212)
Q Consensus        14 l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~-~v~Q~~~~~~~ltv~e~l~   92 (212)
                      ....++.+.++.++.|+|||||||||+++.+....-. .+|.+... ...       ..+ +++.....+          
T Consensus        11 ~~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~-~~~~~~~~-~~~-------~~g~~~~~~~~~~----------   71 (162)
T cd03227          11 FVPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGG-AQSATRRR-SGV-------KAGCIVAAVSAEL----------   71 (162)
T ss_pred             EeccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHh-cchhhhcc-Ccc-------cCCCcceeeEEEE----------
Confidence            3445555666679999999999999999998765543 34433321 110       011 111111000          


Q ss_pred             HHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhh----CCCeEEecCCCC-CChhhHH
Q psy8250          93 LMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTII----VQSGFVPQHDLT-VDTLTVH  167 (212)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~----~p~llilDEPt~-lD~~~~~  167 (212)
                          ..                             ...+||+||+||+.||++|+.    +|+++|+|||++ +|+....
T Consensus        72 ----i~-----------------------------~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~  118 (162)
T cd03227          72 ----IF-----------------------------TRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQ  118 (162)
T ss_pred             ----eh-----------------------------heeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHH
Confidence                00                             001299999999999999997    789999999999 9999999


Q ss_pred             HHHHHHHHHHhhc-----CcchHHHHHHHH
Q psy8250         168 EHMTLMARLKMDR-----NLHHVERARTVD  192 (212)
Q Consensus       168 ~~~~~l~~l~~~~-----~~h~~~~~~~~~  192 (212)
                      .+.+.+.++..+.     .||+.+.+...+
T Consensus       119 ~l~~~l~~~~~~~~~vii~TH~~~~~~~~d  148 (162)
T cd03227         119 ALAEAILEHLVKGAQVIVITHLPELAELAD  148 (162)
T ss_pred             HHHHHHHHHHhcCCEEEEEcCCHHHHHhhh
Confidence            9999998876542     379988776543

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=99.78  E-value=2.1e-18  Score=145.08  Aligned_cols=62  Identities=21%  Similarity=0.220  Sum_probs=52.3

Q ss_pred             CCChHHHHHHHHHHHHhh----CCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH
Q psy8250         131 VLSGGERKRVALAVQTII----VQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD  192 (212)
Q Consensus       131 ~LSgGqrqRv~lA~al~~----~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~  192 (212)
                      .|||||+||+++|++++.    +|+++|+|||++ +|+.....+.+.+.++....    .+|+...+..++
T Consensus       170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d  240 (276)
T cd03241         170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMAD  240 (276)
T ss_pred             hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcC
Confidence            499999999999997765    999999999999 99999999999999986532    379987554333

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=99.78  E-value=2.7e-19  Score=145.95  Aligned_cols=144  Identities=17%  Similarity=0.191  Sum_probs=97.3

Q ss_pred             CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEE-EEcCCCCCCCCCCHH
Q psy8250          10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSG-FVPQHDLTVDTLTVH   88 (212)
Q Consensus        10 ~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~-~v~Q~~~~~~~ltv~   88 (212)
                      ...+.+|+++++.++++++|.||||+|||||+++|+-. .                  ...++| |||.+...++     
T Consensus        16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~-~------------------~la~~g~~vpa~~~~~~-----   71 (222)
T cd03285          16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI-V------------------LMAQIGCFVPCDSADIP-----   71 (222)
T ss_pred             CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH-H------------------HHHHhCCCcCcccEEEe-----
Confidence            45689999999999999999999999999999999721 0                  011122 4444321111     


Q ss_pred             HHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHH--hhCCCeEEecCC---CC-CC
Q psy8250          89 EHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQT--IIVQSGFVPQHD---LT-VD  162 (212)
Q Consensus        89 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al--~~~p~llilDEP---t~-lD  162 (212)
                                            .+++++..+++.+..   ...+|.|+++++.+++++  +.+|+++|||||   |+ +|
T Consensus        72 ----------------------~~~~il~~~~l~d~~---~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD  126 (222)
T cd03285          72 ----------------------IVDCILARVGASDSQ---LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYD  126 (222)
T ss_pred             ----------------------ccceeEeeeccccch---hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHH
Confidence                                  112344455554332   578999999999999999  899999999999   99 99


Q ss_pred             hhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCC
Q psy8250         163 TLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRP  205 (212)
Q Consensus       163 ~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~  205 (212)
                      +.+....  +++.+.++ .     .||+ .++... +  ..+++|++..++.
T Consensus       127 ~~~~~~~--il~~l~~~~~~~vlisTH~-~el~~~~~~~~~i~~g~~~~~~~  175 (222)
T cd03285         127 GFGLAWA--IAEYIATQIKCFCLFATHF-HELTALADEVPNVKNLHVTALTD  175 (222)
T ss_pred             HHHHHHH--HHHHHHhcCCCeEEEEech-HHHHHHhhcCCCeEEEEEEEEEe
Confidence            8888533  33444332 1     3786 444332 2  3567787765553

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>KOG0066|consensus

Probab=99.77  E-value=3.5e-19  Score=154.48  Aligned_cols=184  Identities=22%  Similarity=0.197  Sum_probs=129.1

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCC--CCCCceEEEECCEeCCccc-------c---
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRI--QGDVDGQILLNGLEVEKNL-------M---   68 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~--~p~~~G~I~~~g~~~~~~~-------~---   68 (212)
                      |++++.+-.++.++.|-|+.|-.|..||++||||-||||||+.|+..-  .|+ .=.+.+..+++....       +   
T Consensus       267 iEnF~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPp-nIDvLlCEQEvvad~t~Ai~tvl~aD  345 (807)
T KOG0066|consen  267 IENFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPP-NIDVLLCEQEVVADSTSAIDTVLKAD  345 (807)
T ss_pred             eeeeeeecccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCC-CCceEeeeeeeeecCcHHHHHHHHhh
Confidence            467777777888999999999999999999999999999999998642  232 334555555542100       0   


Q ss_pred             cceEEE-------EcCCCCCCCCCCHHHHHHHHH-hhhcccCCCHHHHHHHHHHHHHHcCCcc-ccCCCCCCCChHHHHH
Q psy8250          69 VKVSGF-------VPQHDLTVDTLTVHEHMTLMA-RLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKR  139 (212)
Q Consensus        69 ~~~i~~-------v~Q~~~~~~~ltv~e~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqrqR  139 (212)
                      .++..+       ..|-  --...|+.|-+.-.+ .++.   +.......++..+|.-+|++. ..+++...+|||-|.|
T Consensus       346 ~kRl~lLeee~~L~~q~--e~Gd~taaErl~~v~~ELra---iGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMR  420 (807)
T KOG0066|consen  346 KKRLALLEEEAKLMSQI--EEGDTTAAERLKEVADELRA---IGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMR  420 (807)
T ss_pred             HHHHHHHHHHHHHHHHH--HcCchHHHHHHHHHHHHHHH---hccccchhHHHHHHhhcCCChhHhcCCccccCCceeee
Confidence            001111       1110  012335555443322 1221   112234556788999999975 5678888999999999


Q ss_pred             HHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc--CcchHHHHHH
Q psy8250         140 VALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR--NLHHVERART  190 (212)
Q Consensus       140 v~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~--~~h~~~~~~~  190 (212)
                      |+|||||...|-+|+|||||+ ||..+.-.+-+.|+-|+...  ++||-.+...
T Consensus       421 vSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFLD~  474 (807)
T KOG0066|consen  421 VSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLDS  474 (807)
T ss_pred             hhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchHHH
Confidence            999999999999999999999 99999988889999998753  4688665544

>KOG0063|consensus

Probab=99.76  E-value=8.9e-18  Score=145.15  Aligned_cols=179  Identities=19%  Similarity=0.225  Sum_probs=127.9

Q ss_pred             ccCC-cceeeeeEEEEcCC-----cEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCC
Q psy8250           7 LFGD-TNYKESLSGIAESG-----SLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL   80 (212)
Q Consensus         7 ~~~~-~~~l~~vs~~i~~G-----e~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~   80 (212)
                      +|.+ +..+.+..+.|+.|     |++..+|+||.||||++++++|.+.|+..|+|-..           .++|-||...
T Consensus       344 ~Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~l-----------nVSykpqkis  412 (592)
T KOG0063|consen  344 SYPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVL-----------NVSYKPQKIS  412 (592)
T ss_pred             ccCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCccccc-----------ceeccccccC
Confidence            4533 45677888888776     57899999999999999999999998534444322           2677777644


Q ss_pred             CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC
Q psy8250          81 TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT  160 (212)
Q Consensus        81 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~  160 (212)
                      --..-||++.+.--.+-       .-.....+.+.++-+.+++..++.+..|||||.||+++|.+|=..+++++.|||.+
T Consensus       413 pK~~~tvR~ll~~kIr~-------ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsA  485 (592)
T KOG0063|consen  413 PKREGTVRQLLHTKIRD-------AYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSA  485 (592)
T ss_pred             ccccchHHHHHHHHhHh-------hhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchh
Confidence            33445777655432111       11224456788888888999999999999999999999999999999999999999


Q ss_pred             -CChhhHHHHHHHHHHHHhh--c----CcchHHHHHHHHHHHHhcCeeecCCch
Q psy8250         161 -VDTLTVHEHMTLMARLKMD--R----NLHHVERARTVDALLKELGLLKCRPAD  207 (212)
Q Consensus       161 -lD~~~~~~~~~~l~~l~~~--~----~~h~~~~~~~~~~~l~~g~~~~~~~~~  207 (212)
                       ||...+...-..++++--.  .    +.||+-.+    .++.+-.++++|.|.
T Consensus       486 ylDSeQRi~AskvikRfilhakktafvVEhdfIma----TYladrvivf~G~ps  535 (592)
T KOG0063|consen  486 YLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMA----TYLADRVIVFEGQPS  535 (592)
T ss_pred             hcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHH----HhhcceeEEEecCcc
Confidence             9999888777777775322  1    13553222    244455566776554

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=99.76  E-value=1.9e-18  Score=139.29  Aligned_cols=134  Identities=16%  Similarity=0.092  Sum_probs=95.9

Q ss_pred             CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEE-EEcCCCCCCCCCCHH
Q psy8250          10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSG-FVPQHDLTVDTLTVH   88 (212)
Q Consensus        10 ~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~-~v~Q~~~~~~~ltv~   88 (212)
                      +..+.+|++|++.+|++++|+||||+||||++++|+++..-   +                ++| ++   |..+..+++.
T Consensus        15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l---a----------------~~G~~v---pa~~~~l~~~   72 (204)
T cd03282          15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIM---A----------------QIGCFV---PAEYATLPIF   72 (204)
T ss_pred             CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH---H----------------HcCCCc---chhhcCccCh
Confidence            45689999999999999999999999999999999876311   1                112 22   3333444555


Q ss_pred             HHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHH
Q psy8250          89 EHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVH  167 (212)
Q Consensus        89 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~  167 (212)
                      +++..                        .++..+...+..+.+|.|++|+ ..+.+++.+|+++|+|||++ +|+....
T Consensus        73 d~I~~------------------------~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~  127 (204)
T cd03282          73 NRLLS------------------------RLSNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGF  127 (204)
T ss_pred             hheeE------------------------ecCCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHH
Confidence            55432                        2233333456678899999975 55567889999999999999 9987765


Q ss_pred             HH-HHHHHHHHhhc-----CcchHHHHHH
Q psy8250         168 EH-MTLMARLKMDR-----NLHHVERART  190 (212)
Q Consensus       168 ~~-~~~l~~l~~~~-----~~h~~~~~~~  190 (212)
                      .+ ..++..+.+.+     .||+.+.+..
T Consensus       128 ~l~~~il~~l~~~~~~~i~~TH~~~l~~~  156 (204)
T cd03282         128 AISLAILECLIKKESTVFFATHFRDIAAI  156 (204)
T ss_pred             HHHHHHHHHHHhcCCEEEEECChHHHHHH
Confidence            54 45667776543     3899887754

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=99.75  E-value=7.1e-19  Score=141.40  Aligned_cols=147  Identities=16%  Similarity=0.041  Sum_probs=91.2

Q ss_pred             eeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHHHHH
Q psy8250          15 ESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLM   94 (212)
Q Consensus        15 ~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~   94 (212)
                      -..++++.+|++++|+|||||||||||++|++.......|.....        ....+++..|.   +..+         
T Consensus        20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~--------~~~~i~~~dqi---~~~~---------   79 (202)
T cd03243          20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPA--------ESASIPLVDRI---FTRI---------   79 (202)
T ss_pred             EeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccc--------cccccCCcCEE---EEEe---------
Confidence            345666779999999999999999999999954321123321110        01112222211   1110         


Q ss_pred             HhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHH-H
Q psy8250          95 ARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMT-L  172 (212)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~-~  172 (212)
                                               +..+......+.+|.+++| +..+.+++.+|+++|+|||++ +|+.....+.. +
T Consensus        80 -------------------------~~~d~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~l  133 (202)
T cd03243          80 -------------------------GAEDSISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAV  133 (202)
T ss_pred             -------------------------cCcccccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHH
Confidence                                     1111122334556666665 666678889999999999999 99998887754 5


Q ss_pred             HHHHHhhc-----CcchHHHHHHHH--HHHHhcCeeecCCch
Q psy8250         173 MARLKMDR-----NLHHVERARTVD--ALLKELGLLKCRPAD  207 (212)
Q Consensus       173 l~~l~~~~-----~~h~~~~~~~~~--~~l~~g~~~~~~~~~  207 (212)
                      ++.+.+..     .||+.+.+...+  ..++++++..+++.+
T Consensus       134 l~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~  175 (202)
T cd03243         134 LEHLLEKGCRTLFATHFHELADLPEQVPGVKNLHMEELITTG  175 (202)
T ss_pred             HHHHHhcCCeEEEECChHHHHHHhhcCCCeEEEEEEEEecCC
Confidence            66665432     379987776544  355577776666543

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage

Probab=99.72  E-value=1.8e-16  Score=132.97  Aligned_cols=60  Identities=12%  Similarity=0.039  Sum_probs=49.3

Q ss_pred             CCCCChHHHHHHHHHHHHh---------hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-cCcchHHHH
Q psy8250         129 LNVLSGGERKRVALAVQTI---------IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-RNLHHVERA  188 (212)
Q Consensus       129 ~~~LSgGqrqRv~lA~al~---------~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~~~h~~~~~  188 (212)
                      ...+|+||+|+++||++|+         .+|+++|+||||+ ||+..+..+++.+.++..- -.+|+.+.+
T Consensus       181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~q~ii~~~~~~~~  251 (270)
T cd03242         181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRVQTFVTTTDLADF  251 (270)
T ss_pred             HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCCCEEEEeCCchhc
Confidence            4568999999999999985         6999999999999 9999999999999876421 125665544

When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.69  E-value=5.6e-17  Score=154.83  Aligned_cols=128  Identities=20%  Similarity=0.231  Sum_probs=99.3

Q ss_pred             CCCCCHHHHHHHHHhhhcccC---CC---HHHHHHHHHHHHHHcCCccc-cCCCCCCCChHHHHHHHHHHHHhhCC--Ce
Q psy8250          82 VDTLTVHEHMTLMARLKMDRN---LH---HVERARTVDALLKELGLLKC-KNSVLNVLSGGERKRVALAVQTIIVQ--SG  152 (212)
Q Consensus        82 ~~~ltv~e~l~~~~~~~~~~~---~~---~~~~~~~~~~~l~~~gl~~~-~~~~~~~LSgGqrqRv~lA~al~~~p--~l  152 (212)
                      +..++|.|.+.|...+.....   ..   -.+...++ ++|+.+||.+. +++++.+|||||+|||.||+||+.+|  ++
T Consensus       434 ~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl-~~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~l  512 (943)
T PRK00349        434 VSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERL-KFLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVL  512 (943)
T ss_pred             HhcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HHhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcE
Confidence            346788888888544321100   00   01223344 37888999876 79999999999999999999999997  99


Q ss_pred             EEecCCCC-CChhhHHHHHHHHHHHHhhcC-----cchHHHHHHHH--HHH------HhcCeeecCCchhhh
Q psy8250         153 FVPQHDLT-VDTLTVHEHMTLMARLKMDRN-----LHHVERARTVD--ALL------KELGLLKCRPADELN  210 (212)
Q Consensus       153 lilDEPt~-lD~~~~~~~~~~l~~l~~~~~-----~h~~~~~~~~~--~~l------~~g~~~~~~~~~~~~  210 (212)
                      +||||||+ ||+.....++++|+++++.+.     +|+++++..++  .+|      ++|++++.|+++++.
T Consensus       513 lILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~  584 (943)
T PRK00349        513 YVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRAADYIVDIGPGAGVHGGEVVASGTPEEIM  584 (943)
T ss_pred             EEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEeccccCCCCCEEeeccCHHHHh
Confidence            99999999 999999999999999987543     69999876444  367      899999999998873

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.67  E-value=1.8e-16  Score=151.19  Aligned_cols=127  Identities=20%  Similarity=0.205  Sum_probs=95.7

Q ss_pred             CCCCHHHHHHHHHhhhcccCCCH------HHHHHHHHHHHHHcCCccc-cCCCCCCCChHHHHHHHHHHHHhhCC--CeE
Q psy8250          83 DTLTVHEHMTLMARLKMDRNLHH------VERARTVDALLKELGLLKC-KNSVLNVLSGGERKRVALAVQTIIVQ--SGF  153 (212)
Q Consensus        83 ~~ltv~e~l~~~~~~~~~~~~~~------~~~~~~~~~~l~~~gl~~~-~~~~~~~LSgGqrqRv~lA~al~~~p--~ll  153 (212)
                      ..||+.|.+.|...+........      .+...+ -+++..+||... +++.+.+|||||+|||.||+||+.+|  +++
T Consensus       433 ~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~r-l~~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~ll  511 (924)
T TIGR00630       433 SELSIREAHEFFNQLDLTPEEKKIAEEILKEIKER-LGFLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLY  511 (924)
T ss_pred             hcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HHhHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEE
Confidence            35778877777654321100000      011112 234777888765 79999999999999999999999986  899


Q ss_pred             EecCCCC-CChhhHHHHHHHHHHHHhhcC-----cchHHHHHHHH--HHH------HhcCeeecCCchhhh
Q psy8250         154 VPQHDLT-VDTLTVHEHMTLMARLKMDRN-----LHHVERARTVD--ALL------KELGLLKCRPADELN  210 (212)
Q Consensus       154 ilDEPt~-lD~~~~~~~~~~l~~l~~~~~-----~h~~~~~~~~~--~~l------~~g~~~~~~~~~~~~  210 (212)
                      ||||||+ ||+.+...++++|+++++++.     +|+++.+..++  ..|      ++|++++.|+++++.
T Consensus       512 ILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~  582 (924)
T TIGR00630       512 VLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRAADYVIDIGPGAGIHGGEVVASGTPEEIL  582 (924)
T ss_pred             EEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence            9999999 999999999999999987642     69998876444  367      799999999988873

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=99.65  E-value=2.2e-16  Score=113.93  Aligned_cols=75  Identities=19%  Similarity=0.141  Sum_probs=62.1

Q ss_pred             cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEcCCCCCCCCCCH
Q psy8250          11 TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQHDLTVDTLTV   87 (212)
Q Consensus        11 ~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~Q~~~~~~~ltv   87 (212)
                      +.+|++++|++++|++++|+||||||||||++++.       +|++.++|.++..   ....+.+++++|+  ++ ..|+
T Consensus         2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf-~~ti   71 (107)
T cd00820           2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI-------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GL-EIRL   71 (107)
T ss_pred             ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh-------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cc-hhhH
Confidence            56899999999999999999999999999999975       6789999998843   2345567788887  33 4499


Q ss_pred             HHHHHHHH
Q psy8250          88 HEHMTLMA   95 (212)
Q Consensus        88 ~e~l~~~~   95 (212)
                      +||+.+.-
T Consensus        72 ~~Ni~~~~   79 (107)
T cd00820          72 RLNIFLIT   79 (107)
T ss_pred             Hhhceeee
Confidence            99998743

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=99.62  E-value=1.1e-15  Score=124.28  Aligned_cols=148  Identities=16%  Similarity=0.050  Sum_probs=89.3

Q ss_pred             cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHH
Q psy8250          11 TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEH   90 (212)
Q Consensus        11 ~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~   90 (212)
                      ..+.++++++..+ ++++|+|||||||||+||+|++.......|      ..+..  ....++++.|   +++.+++.++
T Consensus        18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g------~~vp~--~~~~i~~~~~---i~~~~~~~~~   85 (216)
T cd03284          18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIG------SFVPA--SKAEIGVVDR---IFTRIGASDD   85 (216)
T ss_pred             ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccC------Ceecc--ccceecceee---EeccCCchhh
Confidence            3588999999887 999999999999999999998754321122      22211  1234566644   4566666666


Q ss_pred             HHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHH--hhCCCeEEecCC---CC-CChh
Q psy8250          91 MTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQT--IIVQSGFVPQHD---LT-VDTL  164 (212)
Q Consensus        91 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al--~~~p~llilDEP---t~-lD~~  164 (212)
                      +..+                                     .|.=...+..+++++  +.+|+++|||||   |+ +|..
T Consensus        86 ls~g-------------------------------------~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~  128 (216)
T cd03284          86 LAGG-------------------------------------RSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGL  128 (216)
T ss_pred             hccC-------------------------------------cchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHH
Confidence            5432                                     122222233333333  569999999999   88 8876


Q ss_pred             hHHHHHHHHHHHHhh-c-----CcchHHHHHHHH--HHHHhcCeeecCCchhh
Q psy8250         165 TVHEHMTLMARLKMD-R-----NLHHVERARTVD--ALLKELGLLKCRPADEL  209 (212)
Q Consensus       165 ~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~  209 (212)
                      ..  ...++..+.+. .     .||+.+.....+  ..++++++..++..+++
T Consensus       129 ~~--~~~il~~l~~~~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~~l  179 (216)
T cd03284         129 SI--AWAIVEYLHEKIGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGGGV  179 (216)
T ss_pred             HH--HHHHHHHHHhccCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence            53  22334444333 2     379865443322  23457766666555544

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.62  E-value=1.2e-15  Score=123.41  Aligned_cols=49  Identities=12%  Similarity=-0.081  Sum_probs=44.0

Q ss_pred             CCCChH--HHHHHHHHHHHhhCCCeEEecCCC-----C-CChhhHHHHHHHHHHHHh
Q psy8250         130 NVLSGG--ERKRVALAVQTIIVQSGFVPQHDL-----T-VDTLTVHEHMTLMARLKM  178 (212)
Q Consensus       130 ~~LSgG--qrqRv~lA~al~~~p~llilDEPt-----~-lD~~~~~~~~~~l~~l~~  178 (212)
                      +..||+  |++++.||++++.+|+++++||||     + ||+..++.+.+++++++.
T Consensus       149 Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~  205 (215)
T PTZ00132        149 SAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN  205 (215)
T ss_pred             eCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence            344444  999999999999999999999999     9 999999999999999864

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=99.56  E-value=1.8e-15  Score=120.09  Aligned_cols=69  Identities=10%  Similarity=-0.037  Sum_probs=47.6

Q ss_pred             CCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHH-HHHHHHHhh-c-----CcchHHHHH
Q psy8250         120 GLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHM-TLMARLKMD-R-----NLHHVERAR  189 (212)
Q Consensus       120 gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~-~~l~~l~~~-~-----~~h~~~~~~  189 (212)
                      +..+..++..+++|+|++|...+++ .+.+|+++|+|||++ +|+.....+. .+++.+.++ .     .||+.+...
T Consensus        50 ~~~d~~~~~~s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~  126 (185)
T smart00534       50 GASDSLAQGLSTFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTK  126 (185)
T ss_pred             CCCCchhccccHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHH
Confidence            3334456667889998887433332 234999999999999 9999887764 566666653 2     279986443

>KOG0063|consensus

Probab=99.56  E-value=6.1e-15  Score=127.74  Aligned_cols=161  Identities=16%  Similarity=0.193  Sum_probs=106.0

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEE--------cCCC---CCCCCCCHHHH
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFV--------PQHD---LTVDTLTVHEH   90 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v--------~Q~~---~~~~~ltv~e~   90 (212)
                      .+|++.|++|.||-||||-+++++|.++|. -|.  ++.-+.+    ...++|.        |+.+   .+ ....=.++
T Consensus        98 rpg~vlglvgtngigkstAlkilagk~kpn-lg~--~~~pp~w----~~il~~frgselq~yftk~le~~l-k~~~kpQy  169 (592)
T KOG0063|consen   98 RPGQVLGLVGTNGIGKSTALKILAGKQKPN-LGR--YDNPPDW----QEILTYFRGSELQNYFTKILEDNL-KAIIKPQY  169 (592)
T ss_pred             CcchhccccccCcccHHHHHHHHhCCCCCC-CCC--CCCCcch----HHHhhhhhhHHHhhhhhhhccccc-cCcCChHH
Confidence            679999999999999999999999999984 443  1111111    1111110        0000   00 00000111


Q ss_pred             HHHHHh-hhc--ccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhH
Q psy8250          91 MTLMAR-LKM--DRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTV  166 (212)
Q Consensus        91 l~~~~~-~~~--~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~  166 (212)
                      +.-..+ ...  ..-+..........++++.+.|....++-+..||||+-||.+||++.+++.++.++|||.+ ||...+
T Consensus       170 vd~ipr~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQR  249 (592)
T KOG0063|consen  170 VDQIPRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQR  249 (592)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHh
Confidence            111111 000  0001122233356778888889888999999999999999999999999999999999999 999999


Q ss_pred             HHHHHHHHHHHhhc-----CcchHHHHHH
Q psy8250         167 HEHMTLMARLKMDR-----NLHHVERART  190 (212)
Q Consensus       167 ~~~~~~l~~l~~~~-----~~h~~~~~~~  190 (212)
                      ..-...|+.+....     +.||+.....
T Consensus       250 LkaA~~IRsl~~p~~YiIVVEHDLsVLDy  278 (592)
T KOG0063|consen  250 LKAAITIRSLINPDRYIIVVEHDLSVLDY  278 (592)
T ss_pred             hhHHHHHHHhhCCCCeEEEEEeechHHHh
Confidence            99888888876432     2588876644

>TIGR01069 mutS2 MutS2 family protein

Probab=99.56  E-value=6.4e-15  Score=138.89  Aligned_cols=126  Identities=18%  Similarity=0.155  Sum_probs=85.4

Q ss_pred             eEEEEcCC-cEEEEECCCCccHHHHHHHHHcC-CCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHHHHH
Q psy8250          17 LSGIAESG-SLLAIMGPSGAGKTTLLACISQR-IQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLM   94 (212)
Q Consensus        17 vs~~i~~G-e~~~iiGpnGaGKSTLl~~i~g~-~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~   94 (212)
                      +|+++..+ ++++|.||||+|||||||+|+|. +.+ ..|.                  +||.....  .+.+.+.+.  
T Consensus       314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~a-q~G~------------------~Vpa~~~~--~~~~~d~i~--  370 (771)
T TIGR01069       314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMF-QSGI------------------PIPANEHS--EIPYFEEIF--  370 (771)
T ss_pred             ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHH-HhCC------------------CccCCccc--cccchhhee--
Confidence            78888877 89999999999999999999987 333 3441                  22222110  001111110  


Q ss_pred             HhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHH-HHH
Q psy8250          95 ARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEH-MTL  172 (212)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~-~~~  172 (212)
                      ..      +.                .........+++|+||+++..|++++ .+|+++|+|||++ +|+.....+ ..+
T Consensus       371 ~~------i~----------------~~~si~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~ai  427 (771)
T TIGR01069       371 AD------IG----------------DEQSIEQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISI  427 (771)
T ss_pred             ee------cC----------------hHhHHhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHH
Confidence            00      00                00112234677999999999998876 7899999999999 999999988 567


Q ss_pred             HHHHHhhc-----CcchHHHH
Q psy8250         173 MARLKMDR-----NLHHVERA  188 (212)
Q Consensus       173 l~~l~~~~-----~~h~~~~~  188 (212)
                      +..++..+     .||+.+..
T Consensus       428 Le~l~~~g~~viitTH~~eL~  448 (771)
T TIGR01069       428 LEYLLKQNAQVLITTHYKELK  448 (771)
T ss_pred             HHHHHhcCCEEEEECChHHHH
Confidence            77776543     37887754

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=99.55  E-value=6.4e-14  Score=113.66  Aligned_cols=125  Identities=16%  Similarity=0.112  Sum_probs=81.5

Q ss_pred             EEEEcCC--cEEEEECCCCccHHHHHHHHHc--CCCCCCceEEEECCEeCCcccccceEEEEcCCCCCC-CCCCHHHHHH
Q psy8250          18 SGIAESG--SLLAIMGPSGAGKTTLLACISQ--RIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTV-DTLTVHEHMT   92 (212)
Q Consensus        18 s~~i~~G--e~~~iiGpnGaGKSTLl~~i~g--~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~-~~ltv~e~l~   92 (212)
                      ++.+.++  .+++|.||||+|||||||.|+.  .+ + ..|......        .-.++|..|....+ ...++.+++ 
T Consensus        21 d~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a-~~G~~v~a~--------~~~~~~~d~i~~~l~~~~si~~~~-   89 (213)
T cd03281          21 DTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-A-HIGSFVPAD--------SATIGLVDKIFTRMSSRESVSSGQ-   89 (213)
T ss_pred             eEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-H-hCCCeeEcC--------CcEEeeeeeeeeeeCCccChhhcc-
Confidence            3444554  7899999999999999999983  33 3 356554421        11256666642111 111111110 


Q ss_pred             HHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHH-H
Q psy8250          93 LMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEH-M  170 (212)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~-~  170 (212)
                                                           +.+ .-+.||+++|++++.+|+++|+|||++ +|+.....+ .
T Consensus        90 -------------------------------------S~f-~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~  131 (213)
T cd03281          90 -------------------------------------SAF-MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLI  131 (213)
T ss_pred             -------------------------------------chH-HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHH
Confidence                                                 011 346689999999999999999999999 999765444 5


Q ss_pred             HHHHHHHhh---c-----CcchHHHHHHH
Q psy8250         171 TLMARLKMD---R-----NLHHVERARTV  191 (212)
Q Consensus       171 ~~l~~l~~~---~-----~~h~~~~~~~~  191 (212)
                      .+++++.+.   .     .||+.+.+...
T Consensus       132 ail~~l~~~~~~~~~vli~TH~~~l~~~~  160 (213)
T cd03281         132 ATIEHLLKRGPECPRVIVSTHFHELFNRS  160 (213)
T ss_pred             HHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence            688887643   1     27998887553

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK00064 recF recombination protein F; Reviewed

Probab=99.52  E-value=3.6e-13  Score=117.43  Aligned_cols=59  Identities=14%  Similarity=0.064  Sum_probs=49.1

Q ss_pred             CCCChHHHHHHHHHHHHh---------hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc--CcchHHHH
Q psy8250         130 NVLSGGERKRVALAVQTI---------IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR--NLHHVERA  188 (212)
Q Consensus       130 ~~LSgGqrqRv~lA~al~---------~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~--~~h~~~~~  188 (212)
                      ..+|.||+|+++||++|+         .+|+++|+|||++ ||+..+..+++.+.++..+-  .+|+.+.+
T Consensus       272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~~~qv~it~~~~~~~  342 (361)
T PRK00064        272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGLGAQVFITTTDLEDL  342 (361)
T ss_pred             HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhccCCEEEEEcCChhhh
Confidence            579999999999999996         6899999999999 99999999999997653221  35776554

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=99.50  E-value=8e-14  Score=116.71  Aligned_cols=64  Identities=28%  Similarity=0.252  Sum_probs=49.1

Q ss_pred             cEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc----ccccceEEEEcCCCCCCCCCCHHHH
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK----NLMVKVSGFVPQHDLTVDTLTVHEH   90 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~----~~~~~~i~~v~Q~~~~~~~ltv~e~   90 (212)
                      ..++|+||||||||||+++|+|++.| .+|+|.++|+++..    ..+...++++||.. +...++|.+|
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~~~-~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~  179 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARILST-GISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDG  179 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCccCC-CCceEEECCEEeecchhHHHHHHHhccccccc-cccccccccc
Confidence            57899999999999999999999998 69999999999842    23344567777754 3344455443

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=99.48  E-value=9.5e-15  Score=118.58  Aligned_cols=75  Identities=24%  Similarity=0.284  Sum_probs=53.2

Q ss_pred             HHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHh----hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----
Q psy8250         110 RTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTI----IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----  180 (212)
Q Consensus       110 ~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~----~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----  180 (212)
                      ..+.+.+..+++...      .||||||.+++||.-|+    ..++++|||||.+ ||...+..+.++|.++..+.    
T Consensus       121 ~~~~~~l~~~~i~~~------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii  194 (220)
T PF02463_consen  121 KDLEELLPEVGISPE------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFII  194 (220)
T ss_dssp             HHHHHHHHCTTTTTT------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEE
T ss_pred             ccccccccccccccc------ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            445566666666433      89999999999996653    3579999999999 99999999999999987443    


Q ss_pred             CcchHHHHHH
Q psy8250         181 NLHHVERART  190 (212)
Q Consensus       181 ~~h~~~~~~~  190 (212)
                      +||+......
T Consensus       195 ~Th~~~~~~~  204 (220)
T PF02463_consen  195 TTHNPEMFED  204 (220)
T ss_dssp             E-S-HHHHTT
T ss_pred             cccccccccc
Confidence            3788665543

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=99.42  E-value=3.2e-12  Score=104.30  Aligned_cols=47  Identities=21%  Similarity=0.269  Sum_probs=40.8

Q ss_pred             cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHc-CCCCCCceEEEE
Q psy8250          11 TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQ-RIQGDVDGQILL   58 (212)
Q Consensus        11 ~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g-~~~p~~~G~I~~   58 (212)
                      ..+.+|+++++.+|++++|.||||+||||++++|++ .+.+ ..|...+
T Consensus        18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la-~~G~~v~   65 (222)
T cd03287          18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMA-QIGSFVP   65 (222)
T ss_pred             CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHH-hCCCEEE
Confidence            468899999999999999999999999999999999 4455 5777554

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=99.31  E-value=8.4e-12  Score=118.15  Aligned_cols=129  Identities=16%  Similarity=0.143  Sum_probs=84.1

Q ss_pred             eeEEEEc-CCcEEEEECCCCccHHHHHHHHHcCC-CCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHHHH
Q psy8250          16 SLSGIAE-SGSLLAIMGPSGAGKTTLLACISQRI-QGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTL   93 (212)
Q Consensus        16 ~vs~~i~-~Ge~~~iiGpnGaGKSTLl~~i~g~~-~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~   93 (212)
                      ..++.+. .+.++.|.|||++||||+||.++... -+ ..|                  .|||-...  ..+++.+++. 
T Consensus       318 pndi~l~~~~~~~iITGpN~gGKTt~lktigl~~~ma-q~G------------------~~vpa~~~--~~i~~~~~i~-  375 (782)
T PRK00409        318 PKDISLGFDKTVLVITGPNTGGKTVTLKTLGLAALMA-KSG------------------LPIPANEP--SEIPVFKEIF-  375 (782)
T ss_pred             CceeEECCCceEEEEECCCCCCcHHHHHHHHHHHHHH-HhC------------------CCcccCCC--ccccccceEE-
Confidence            3455554 45689999999999999999996431 11 122                  12322210  0111111111 


Q ss_pred             HHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHH-H
Q psy8250          94 MARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHM-T  171 (212)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~-~  171 (212)
                                             ..+|-.+......+++|+||+|++.|++++ .+|+++|+|||++ +|+.....+. .
T Consensus       376 -----------------------~~ig~~~si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~a  431 (782)
T PRK00409        376 -----------------------ADIGDEQSIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAIS  431 (782)
T ss_pred             -----------------------EecCCccchhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHH
Confidence                                   011222234456788999999999999988 8999999999999 9999988885 4


Q ss_pred             HHHHHHhhc-----CcchHHHHHH
Q psy8250         172 LMARLKMDR-----NLHHVERART  190 (212)
Q Consensus       172 ~l~~l~~~~-----~~h~~~~~~~  190 (212)
                      ++..+...+     .||+.+.+..
T Consensus       432 ile~l~~~~~~vIitTH~~el~~~  455 (782)
T PRK00409        432 ILEYLRKRGAKIIATTHYKELKAL  455 (782)
T ss_pred             HHHHHHHCCCEEEEECChHHHHHH
Confidence            666676543     3799777654

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=99.31  E-value=1.9e-12  Score=114.77  Aligned_cols=51  Identities=25%  Similarity=0.357  Sum_probs=46.1

Q ss_pred             ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCce-EEEECCEeCCc
Q psy8250          12 NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDG-QILLNGLEVEK   65 (212)
Q Consensus        12 ~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G-~I~~~g~~~~~   65 (212)
                      .+|++||+++++||+++|+|||||||||||+  +|+..|+ +| +|.++|.++..
T Consensus        20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~-sGg~I~ldg~~~~~   71 (504)
T TIGR03238        20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFS-EGYEFFLDATHSFS   71 (504)
T ss_pred             HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCC-CCCEEEECCEECCC
Confidence            5899999999999999999999999999999  6777784 66 89999999854

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=99.23  E-value=1.2e-10  Score=95.67  Aligned_cols=130  Identities=21%  Similarity=0.227  Sum_probs=76.6

Q ss_pred             EEcCCcEEEEECCCCccHHHH-HHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHHHHHHhhh
Q psy8250          20 IAESGSLLAIMGPSGAGKTTL-LACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLK   98 (212)
Q Consensus        20 ~i~~Ge~~~iiGpnGaGKSTL-l~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~   98 (212)
                      -+++|+++.|.|||||||||| ++++++...+ ...                 +.|+..+      .+..+.+.....+.
T Consensus        20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~-g~~-----------------~~yi~~e------~~~~~~~~~~~~~g   75 (230)
T PRK08533         20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQN-GYS-----------------VSYVSTQ------LTTTEFIKQMMSLG   75 (230)
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhC-CCc-----------------EEEEeCC------CCHHHHHHHHHHhC
Confidence            379999999999999999999 6888886543 122                 2333221      13444443332221


Q ss_pred             cccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhh----CCCeEEecCCCC-C----ChhhHHHH
Q psy8250          99 MDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTII----VQSGFVPQHDLT-V----DTLTVHEH  169 (212)
Q Consensus        99 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~----~p~llilDEPt~-l----D~~~~~~~  169 (212)
                      .  .         ++++... +.-...+-. ..+|+++.++-.+++.+-.    +|+++++|||++ +    |+...+.+
T Consensus        76 ~--~---------~~~~~~~-~~l~~~~~~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l  142 (230)
T PRK08533         76 Y--D---------INKKLIS-GKLLYIPVY-PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDL  142 (230)
T ss_pred             C--c---------hHHHhhc-CcEEEEEec-ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHH
Confidence            1  0         0111111 110111111 2366666555555444433    699999999999 7    77777889


Q ss_pred             HHHHHHHHhhcC----cchHH
Q psy8250         170 MTLMARLKMDRN----LHHVE  186 (212)
Q Consensus       170 ~~~l~~l~~~~~----~h~~~  186 (212)
                      .++++.+++.+.    +|+..
T Consensus       143 ~~~l~~l~~~g~tvi~t~~~~  163 (230)
T PRK08533        143 MAFFKRISSLNKVIILTANPK  163 (230)
T ss_pred             HHHHHHHHhCCCEEEEEeccc
Confidence            999988876532    56644

>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A

Probab=99.22  E-value=1.5e-11  Score=99.44  Aligned_cols=58  Identities=17%  Similarity=0.189  Sum_probs=45.9

Q ss_pred             CCCCChHHHHHHHHHHHHhhCC---CeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHH
Q psy8250         129 LNVLSGGERKRVALAVQTIIVQ---SGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVE  186 (212)
Q Consensus       129 ~~~LSgGqrqRv~lA~al~~~p---~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~  186 (212)
                      ...+|.|++|.+.|+.++...+   .++++|||.+ |+|..++.+.++|..+....     .||...
T Consensus       234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~  300 (303)
T PF13304_consen  234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF  300 (303)
T ss_dssp             GS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred             eccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence            4567999999999998888877   8999999999 99999999999998876521     378754

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=99.21  E-value=1e-10  Score=96.91  Aligned_cols=167  Identities=18%  Similarity=0.111  Sum_probs=85.4

Q ss_pred             EEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCce--EEEEC--CEe-CCcccccceE--EEEcCCCCCCCCCCHHHHH
Q psy8250          19 GIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDG--QILLN--GLE-VEKNLMVKVS--GFVPQHDLTVDTLTVHEHM   91 (212)
Q Consensus        19 ~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G--~I~~~--g~~-~~~~~~~~~i--~~v~Q~~~~~~~ltv~e~l   91 (212)
                      +.+..|+.++|+||+|+|||||++.|++.... ..+  .+++.  +.+ .+...+.+.+  .++......    +....+
T Consensus        11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~-~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~----~~~~~~   85 (249)
T cd01128          11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITK-NHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE----PPERHV   85 (249)
T ss_pred             cccCCCCEEEEECCCCCCHHHHHHHHHhcccc-ccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC----CHHHHH
Confidence            46889999999999999999999999987754 222  32221  211 1111111111  122221111    111111


Q ss_pred             HH-------HHhhhcccCCC---HHHHHHHHHHHHHHcCCccccCCCCCCCChHH--------HHHHHHHHHHhhCCCeE
Q psy8250          92 TL-------MARLKMDRNLH---HVERARTVDALLKELGLLKCKNSVLNVLSGGE--------RKRVALAVQTIIVQSGF  153 (212)
Q Consensus        92 ~~-------~~~~~~~~~~~---~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq--------rqRv~lA~al~~~p~ll  153 (212)
                      ..       ...+.. .+..   --+...+.......+..     .....+|||+        +||+++||++..+++|.
T Consensus        86 ~~~~~~~~~a~~~~~-~G~~vll~iDei~r~a~a~~ev~~-----~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt  159 (249)
T cd01128          86 QVAEMVLEKAKRLVE-HGKDVVILLDSITRLARAYNTVVP-----PSGKILSGGVDANALHKPKRFFGAARNIEEGGSLT  159 (249)
T ss_pred             HHHHHHHHHHHHHHH-CCCCEEEEEECHHHhhhhhhhccc-----cCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceE
Confidence            11       111100 0000   00011122222222222     2234579999        99999999998999999


Q ss_pred             EecCCCC-CChhhHHH-HHHHHHHHHhhc-----CcchHHHHHHH--HHHHHhcCe
Q psy8250         154 VPQHDLT-VDTLTVHE-HMTLMARLKMDR-----NLHHVERARTV--DALLKELGL  200 (212)
Q Consensus       154 ilDEPt~-lD~~~~~~-~~~~l~~l~~~~-----~~h~~~~~~~~--~~~l~~g~~  200 (212)
                      +|  ||+ +|..+... +.  +.+++...     .+|.+.....+  ..+++.|.+
T Consensus       160 ~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr  211 (249)
T cd01128         160 II--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTR  211 (249)
T ss_pred             Ee--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCc
Confidence            99  999 88544432 33  34444211     14555444333  235555554

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=99.20  E-value=5.1e-11  Score=96.94  Aligned_cols=136  Identities=15%  Similarity=0.077  Sum_probs=79.7

Q ss_pred             CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHH
Q psy8250          10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHE   89 (212)
Q Consensus        10 ~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e   89 (212)
                      +..+-+|++|+.++|++++|.||||+||||+++++++...-...|.      .+....  ..++++   ..++..+...+
T Consensus        16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~------~vpa~~--~~i~~~---~~i~~~~~~~d   84 (218)
T cd03286          16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGM------DVPAKS--MRLSLV---DRIFTRIGARD   84 (218)
T ss_pred             CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCC------ccCccc--cEeccc---cEEEEecCccc
Confidence            4568899999999999999999999999999999987532111121      111100  011111   11111111122


Q ss_pred             HHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHH
Q psy8250          90 HMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHE  168 (212)
Q Consensus        90 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~  168 (212)
                      ++....                                  +.++ -|-+++.-....+.+|+++|+|||.. .++.....
T Consensus        85 ~~~~~~----------------------------------StF~-~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~  129 (218)
T cd03286          85 DIMKGE----------------------------------STFM-VELSETANILRHATPDSLVILDELGRGTSTHDGYA  129 (218)
T ss_pred             ccccCc----------------------------------chHH-HHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHH
Confidence            221100                                  0011 12233333333346799999999999 89888877


Q ss_pred             HHHH-HHHHHhh-c-----CcchHHHHHHH
Q psy8250         169 HMTL-MARLKMD-R-----NLHHVERARTV  191 (212)
Q Consensus       169 ~~~~-l~~l~~~-~-----~~h~~~~~~~~  191 (212)
                      +... +..+.+. .     .||+.+.+...
T Consensus       130 la~ail~~L~~~~~~~~i~~TH~~el~~~~  159 (218)
T cd03286         130 IAHAVLEYLVKKVKCLTLFSTHYHSLCDEF  159 (218)
T ss_pred             HHHHHHHHHHHhcCCcEEEEeccHHHHHHh
Confidence            7666 6666653 2     37998887653

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=99.20  E-value=1.2e-10  Score=103.08  Aligned_cols=128  Identities=20%  Similarity=0.124  Sum_probs=89.2

Q ss_pred             cccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCC
Q psy8250           4 FHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTV   82 (212)
Q Consensus         4 l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~   82 (212)
                      ++..|. +..+++.+ |.+.+|+.++|+|+||+|||||+++|++...+ +.|.|.+.|+.                .   
T Consensus       136 i~~~l~TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~-~~gvI~~iGer----------------g---  194 (432)
T PRK06793        136 ITDVFETGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKA-DINVISLVGER----------------G---  194 (432)
T ss_pred             hhhccCCCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCC-CeEEEEeCCCC----------------c---
Confidence            344453 45677774 99999999999999999999999999999887 57766554432                1   


Q ss_pred             CCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-ccCCCCCCCChHHHHHHHHHHHHh-------hCCCeEE
Q psy8250          83 DTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQTI-------IVQSGFV  154 (212)
Q Consensus        83 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqrqRv~lA~al~-------~~p~lli  154 (212)
                        .++.|.+.....                     .-++.. ..=....+-|.|+|+|++.+.+.+       .++-+++
T Consensus       195 --~ev~e~~~~~l~---------------------~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLli  251 (432)
T PRK06793        195 --REVKDFIRKELG---------------------EEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLM  251 (432)
T ss_pred             --ccHHHHHHHHhh---------------------hcccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEE
Confidence              255554432111                     001110 011345678999999999998887       7899999


Q ss_pred             ecCCCC-CChhhHHHHHHHHHHHH
Q psy8250         155 PQHDLT-VDTLTVHEHMTLMARLK  177 (212)
Q Consensus       155 lDEPt~-lD~~~~~~~~~~l~~l~  177 (212)
                      +|+||. .|..  +++..++.+.-
T Consensus       252 lDslTr~a~A~--reisl~~~e~p  273 (432)
T PRK06793        252 MDSVTRFADAR--RSVDIAVKELP  273 (432)
T ss_pred             ecchHHHHHHH--HHHHHHhcCCC
Confidence            999999 8774  55555554443

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=99.18  E-value=3.7e-11  Score=106.83  Aligned_cols=169  Identities=17%  Similarity=0.143  Sum_probs=103.2

Q ss_pred             CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEe---CCc--------ccccceEEEEcCC
Q psy8250          10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLE---VEK--------NLMVKVSGFVPQH   78 (212)
Q Consensus        10 ~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~---~~~--------~~~~~~i~~v~Q~   78 (212)
                      +..+++++ |.+.+|++++|+|+||+|||||+++|++...+ +.|.|.+.|+.   +..        ..+++.+.++.+-
T Consensus       145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~-~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~  222 (438)
T PRK07721        145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSA-DLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATS  222 (438)
T ss_pred             chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCC-CeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECC
Confidence            45689999 99999999999999999999999999999988 69999985543   321        1245678888753


Q ss_pred             CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250          79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD  158 (212)
Q Consensus        79 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP  158 (212)
                      ..     +..+-+.-.            .....+.+++..-|..-..  ...+++     |.  |+|+  +-=-+.+.||
T Consensus       223 ~~-----~~~~r~~~~------------~~a~~iAEyfr~~g~~Vll--~~Dslt-----r~--A~A~--rEisl~~ge~  274 (438)
T PRK07721        223 DQ-----PALMRIKGA------------YTATAIAEYFRDQGLNVML--MMDSVT-----RV--AMAQ--REIGLAVGEP  274 (438)
T ss_pred             CC-----CHHHHHHHH------------HHHHHHHHHHHHCCCcEEE--EEeChH-----HH--HHHH--HHHHHhcCCC
Confidence            21     222111110            0111122333222432110  011222     11  1111  0000123575


Q ss_pred             CC---CChhhHHHHHHHHHHHHh--hcC----------cchHHH-HHHHHHHHHhcCeeecCCchh
Q psy8250         159 LT---VDTLTVHEHMTLMARLKM--DRN----------LHHVER-ARTVDALLKELGLLKCRPADE  208 (212)
Q Consensus       159 t~---lD~~~~~~~~~~l~~l~~--~~~----------~h~~~~-~~~~~~~l~~g~~~~~~~~~~  208 (212)
                      .+   +|+.....+.+++.++..  .+.          +||+++ +++....+.+|+++.+++.++
T Consensus       275 P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e~i~d~v~~i~dG~Ivls~~la~  340 (438)
T PRK07721        275 PTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNEPIADTVRGILDGHFVLDRQLAN  340 (438)
T ss_pred             CccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCchhhhhEEEecCEEEEEeccHHH
Confidence            44   899999999999999874  221          588864 334456788999999987654

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=99.17  E-value=5.5e-11  Score=106.55  Aligned_cols=127  Identities=17%  Similarity=0.189  Sum_probs=83.6

Q ss_pred             eeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHHH
Q psy8250          13 YKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMT   92 (212)
Q Consensus        13 ~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~   92 (212)
                      ++++.++.++.|.+++++||||+||||++..|++.+.. ..|..              .++++.+++   ...++.|++.
T Consensus       245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~-~~G~~--------------kV~LI~~Dt---~RigA~EQLr  306 (484)
T PRK06995        245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVM-RHGAS--------------KVALLTTDS---YRIGGHEQLR  306 (484)
T ss_pred             hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHH-hcCCC--------------eEEEEeCCc---cchhHHHHHH
Confidence            45667777889999999999999999999999997755 34431              367888876   3468999999


Q ss_pred             HHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHH-HHHHHHHHhhCC-----CeEEecCCCC
Q psy8250          93 LMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERK-RVALAVQTIIVQ-----SGFVPQHDLT  160 (212)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrq-Rv~lA~al~~~p-----~llilDEPt~  160 (212)
                      ++......   +........+......++.+.....+.+.+.+++- .+.-..+++.++     .+|+||.++.
T Consensus       307 ~~AeilGV---pv~~~~~~~Dl~~aL~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~  377 (484)
T PRK06995        307 IYGKILGV---PVHAVKDAADLRLALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH  377 (484)
T ss_pred             HHHHHhCC---CeeccCCchhHHHHHHhccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc
Confidence            88775432   11111222333445556665555566664434332 233444555554     6889998887

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=99.16  E-value=6.3e-11  Score=94.06  Aligned_cols=83  Identities=19%  Similarity=0.142  Sum_probs=59.7

Q ss_pred             eeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCC--CCCCCCCHHHHH
Q psy8250          14 KESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHD--LTVDTLTVHEHM   91 (212)
Q Consensus        14 l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~--~~~~~ltv~e~l   91 (212)
                      .+=+.+.+++|+.++|+||||||||||+++|+|+++| ..|.|.+.+..-........+++++|..  ..++..+..+.+
T Consensus        15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~-~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   93 (186)
T cd01130          15 AAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPP-DERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLL   93 (186)
T ss_pred             HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCC-CCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHH
Confidence            3445567899999999999999999999999999987 6999999764321112234456665543  345667888887


Q ss_pred             HHHHhh
Q psy8250          92 TLMARL   97 (212)
Q Consensus        92 ~~~~~~   97 (212)
                      ....+.
T Consensus        94 ~~~lR~   99 (186)
T cd01130          94 RSALRM   99 (186)
T ss_pred             HHHhcc
Confidence            765543

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=99.16  E-value=3.7e-10  Score=96.49  Aligned_cols=134  Identities=14%  Similarity=0.092  Sum_probs=81.6

Q ss_pred             eEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccc--cceEEEEcCCCCCCCCCCHHHHHHHH
Q psy8250          17 LSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLM--VKVSGFVPQHDLTVDTLTVHEHMTLM   94 (212)
Q Consensus        17 vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~--~~~i~~v~Q~~~~~~~ltv~e~l~~~   94 (212)
                      +++.+..|+.++|+||+|||||||+++|++.+++ ..|.+.+..  ......  ...+.++.+...              
T Consensus       137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~-~~~iv~ied--~~El~~~~~~~~~l~~~~~~--------------  199 (308)
T TIGR02788       137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPK-DERIITIED--TREIFLPHPNYVHLFYSKGG--------------  199 (308)
T ss_pred             HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCc-cccEEEEcC--ccccCCCCCCEEEEEecCCC--------------
Confidence            5577889999999999999999999999999877 577777742  111111  111222211100              


Q ss_pred             HhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCCCChhhHHHHHHHHH
Q psy8250          95 ARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHMTLMA  174 (212)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~lD~~~~~~~~~~l~  174 (212)
                                                      ......|-    .-.++.+|-++|+++++|||.+      .+.+++++
T Consensus       200 --------------------------------~~~~~~~~----~~~l~~~Lr~~pd~ii~gE~r~------~e~~~~l~  237 (308)
T TIGR02788       200 --------------------------------QGLAKVTP----KDLLQSCLRMRPDRIILGELRG------DEAFDFIR  237 (308)
T ss_pred             --------------------------------CCcCccCH----HHHHHHHhcCCCCeEEEeccCC------HHHHHHHH
Confidence                                            00001111    1235556888999999999997      34556666


Q ss_pred             HHHhhc-----CcchHHHHHHH--HHHHHhcCeeecCCchhh
Q psy8250         175 RLKMDR-----NLHHVERARTV--DALLKELGLLKCRPADEL  209 (212)
Q Consensus       175 ~l~~~~-----~~h~~~~~~~~--~~~l~~g~~~~~~~~~~~  209 (212)
                      .+...+     ++|..+.....  ...+..|+....|.+++.
T Consensus       238 a~~~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~  279 (308)
T TIGR02788       238 AVNTGHPGSITTLHAGSPEEAFEQLALMVKSSQAGLGLDFAY  279 (308)
T ss_pred             HHhcCCCeEEEEEeCCCHHHHHHHHHHHhhccccccCCCHHH
Confidence            665433     14776533333  334557777777766554

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>PRK13695 putative NTPase; Provisional

Probab=99.08  E-value=4.8e-11  Score=93.62  Aligned_cols=77  Identities=8%  Similarity=-0.047  Sum_probs=49.3

Q ss_pred             CCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCCCChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH--HHHHHhc
Q psy8250         126 NSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHMTLMARLKMDR-----NLHHVERARTV--DALLKEL  198 (212)
Q Consensus       126 ~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~--~~~l~~g  198 (212)
                      .++...+|++++-+..+++..+.+|+++++|||..++..+ ..+.+.+.++.+..     ++|+.......  ...+++|
T Consensus        73 ~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~-~~~~~~l~~~~~~~~~~i~v~h~~~~~~~~~~i~~~~~~  151 (174)
T PRK13695         73 GKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKS-PKFVKAVEEVLDSEKPVIATLHRRSVHPFVQEIKSRPGG  151 (174)
T ss_pred             eeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh-HHHHHHHHHHHhCCCeEEEEECchhhHHHHHHHhccCCc
Confidence            3445679999999999999999999999999954433222 33344444443322     26874333323  3466688


Q ss_pred             Ceeec
Q psy8250         199 GLLKC  203 (212)
Q Consensus       199 ~~~~~  203 (212)
                      ++++.
T Consensus       152 ~i~~~  156 (174)
T PRK13695        152 RVYEL  156 (174)
T ss_pred             EEEEE
Confidence            76443

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=99.08  E-value=2.5e-10  Score=101.09  Aligned_cols=87  Identities=25%  Similarity=0.283  Sum_probs=68.0

Q ss_pred             CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCc---eEEEECCEeCCc--------c-cccceEEEEcC
Q psy8250          10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVD---GQILLNGLEVEK--------N-LMVKVSGFVPQ   77 (212)
Q Consensus        10 ~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~---G~I~~~g~~~~~--------~-~~~~~i~~v~Q   77 (212)
                      +..+++++ |++.+|++++|+||||+|||||+++|+|...++ .   |.|-.++.++..        . ..+..+++++|
T Consensus       142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~d-v~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~  219 (434)
T PRK07196        142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQAD-VVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPA  219 (434)
T ss_pred             ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCC-eEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecC
Confidence            45799999 999999999999999999999999999998773 4   334444444421        1 12346899999


Q ss_pred             CCCCCCCCCHHHHHHHHHhhh
Q psy8250          78 HDLTVDTLTVHEHMTLMARLK   98 (212)
Q Consensus        78 ~~~~~~~ltv~e~l~~~~~~~   98 (212)
                      +...+..+++.+++.+.+.+.
T Consensus       220 d~s~~~rl~a~e~a~~iAEyf  240 (434)
T PRK07196        220 DESPLMRIKATELCHAIATYY  240 (434)
T ss_pred             CCChhhhHHHHHHHHHHHHHh
Confidence            998899999999987766543

>TIGR00618 sbcc exonuclease SbcC

Probab=99.04  E-value=5.2e-10  Score=109.53  Aligned_cols=70  Identities=14%  Similarity=0.181  Sum_probs=60.8

Q ss_pred             ccccCCCCCCCChHHHHHHHHHHHHhh----------CCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchH
Q psy8250         122 LKCKNSVLNVLSGGERKRVALAVQTII----------VQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHV  185 (212)
Q Consensus       122 ~~~~~~~~~~LSgGqrqRv~lA~al~~----------~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~  185 (212)
                      ....++++.+|||||++|++||+||+.          +|++||+||||+ ||+.+...++++|.+++..+     ++|+.
T Consensus       941 ~~~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~ 1020 (1042)
T TIGR00618       941 YTGSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVP 1020 (1042)
T ss_pred             CCCCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH
Confidence            345667889999999999999999996          799999999999 99999999999999997643     26998


Q ss_pred             HHHHHH
Q psy8250         186 ERARTV  191 (212)
Q Consensus       186 ~~~~~~  191 (212)
                      +....+
T Consensus      1021 ~~~~~~ 1026 (1042)
T TIGR00618      1021 EFRERI 1026 (1042)
T ss_pred             HHHHhh
Confidence            877654

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK06315 type III secretion system ATPase; Provisional

Probab=99.03  E-value=6.3e-10  Score=98.79  Aligned_cols=122  Identities=18%  Similarity=0.190  Sum_probs=80.0

Q ss_pred             CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECC---EeCCc---ccc---cceEEEE-----
Q psy8250          10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG---LEVEK---NLM---VKVSGFV-----   75 (212)
Q Consensus        10 ~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g---~~~~~---~~~---~~~i~~v-----   75 (212)
                      +..+++++ |.+.+|+.++|+|+||+|||||+++|++..++...|.|.+.|   .++..   ..+   ....+++     
T Consensus       151 Gi~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats  229 (442)
T PRK06315        151 GVRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTS  229 (442)
T ss_pred             eEEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCC
Confidence            34688887 999999999999999999999999999987432357777744   44421   111   1224444     


Q ss_pred             cCCCC--CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-----cccCCCCCCCC
Q psy8250          76 PQHDL--TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-----KCKNSVLNVLS  133 (212)
Q Consensus        76 ~Q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----~~~~~~~~~LS  133 (212)
                      +|+|.  +.+.+ +...+..+.+.+...-+...+...++.++++.+++.     .....+++.||
T Consensus       230 ~q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS  293 (442)
T PRK06315        230 DQSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFS  293 (442)
T ss_pred             CCCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhh
Confidence            88763  22333 444444444433211112356778899999999993     45677787777

>PHA02562 46 endonuclease subunit; Provisional

Probab=99.03  E-value=1.9e-10  Score=105.46  Aligned_cols=65  Identities=17%  Similarity=0.231  Sum_probs=53.6

Q ss_pred             CCCCCCChHHHHHHHHHHHHh----------hCCCeEEecCCC-C-CChhhHHHHHHHHHHHHhhc----CcchHHHHHH
Q psy8250         127 SVLNVLSGGERKRVALAVQTI----------IVQSGFVPQHDL-T-VDTLTVHEHMTLMARLKMDR----NLHHVERART  190 (212)
Q Consensus       127 ~~~~~LSgGqrqRv~lA~al~----------~~p~llilDEPt-~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~  190 (212)
                      ..+..|||||+||++||+||+          .+|+++|||||| + +|+.....+.++|.++ ...    .+|+.+....
T Consensus       464 ~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~-~~~~iiiish~~~~~~~  542 (562)
T PHA02562        464 FSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL-KDTNVFVISHKDHDPQK  542 (562)
T ss_pred             cChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC-CCCeEEEEECchhchhh
Confidence            356789999999999999988          489999999998 6 9999999999999998 322    3798665443


Q ss_pred             HH
Q psy8250         191 VD  192 (212)
Q Consensus       191 ~~  192 (212)
                      ++
T Consensus       543 ~d  544 (562)
T PHA02562        543 FD  544 (562)
T ss_pred             hh
Confidence            33

>TIGR00606 rad50 rad50

Probab=99.02  E-value=8.8e-10  Score=110.04  Aligned_cols=66  Identities=14%  Similarity=0.111  Sum_probs=56.3

Q ss_pred             CCCCCCChHHHH------HHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-----c-----CcchHHHHH
Q psy8250         127 SVLNVLSGGERK------RVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-----R-----NLHHVERAR  189 (212)
Q Consensus       127 ~~~~~LSgGqrq------Rv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-----~-----~~h~~~~~~  189 (212)
                      ...+.||+||||      |++||+|++.+|++|+|||||+ ||+.+...+.+.|..+...     +     .||+++++.
T Consensus      1195 ~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~ 1274 (1311)
T TIGR00606      1195 DMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVE 1274 (1311)
T ss_pred             CCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHH
Confidence            345789999999      9999999999999999999999 9999999999988887321     1     379999887


Q ss_pred             HHH
Q psy8250         190 TVD  192 (212)
Q Consensus       190 ~~~  192 (212)
                      .++
T Consensus      1275 ~~~ 1277 (1311)
T TIGR00606      1275 LLG 1277 (1311)
T ss_pred             HHh
Confidence            643

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG3910 Predicted ATPase [General function prediction only]

Probab=99.00  E-value=7e-09  Score=81.62  Aligned_cols=55  Identities=13%  Similarity=0.065  Sum_probs=43.7

Q ss_pred             cCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc
Q psy8250         125 KNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR  180 (212)
Q Consensus       125 ~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~  180 (212)
                      ..+.....|.||-=--.+.+.+ ...-++|||||-+ |.|.-+-+++..|+.+.+.+
T Consensus       123 ~~~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sG  178 (233)
T COG3910         123 GGRSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSG  178 (233)
T ss_pred             CCcchhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcC
Confidence            3445667899997665555554 5678999999999 99999999999999998764

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.99  E-value=2.6e-10  Score=91.18  Aligned_cols=113  Identities=17%  Similarity=0.149  Sum_probs=66.0

Q ss_pred             EEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCH
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHH  105 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~  105 (212)
                      ++||.||||||||||.++|++++ +  .|.+.+-+.+-                 ++..++..+........+   ..+.
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l-~--~~~~~v~~~D~-----------------~~~~~~~~~~~~~~~~~~---~~~~   57 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQL-G--NPKVVIISQDS-----------------YYKDLSHEELEERKNNNY---DHPD   57 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh-C--CCCeEEEEecc-----------------cccccccccHHHhccCCC---CCCC
Confidence            58999999999999999999987 2  33333322221                 011111111111000000   0000


Q ss_pred             HHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChh
Q psy8250         106 VERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTL  164 (212)
Q Consensus       106 ~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~  164 (212)
                      ........+.+..+......+.+..+.|.|++++..+   .+..|+++|+|.|+. .++.
T Consensus        58 ~~~~~~~~~~l~~l~~~~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~  114 (198)
T cd02023          58 AFDFDLLISHLQDLKNGKSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDKE  114 (198)
T ss_pred             cccHHHHHHHHHHHHCCCCEeccccccccCcccCCce---ecCCCCEEEEechhhccchh
Confidence            1112233455666655555677788899999876655   577899999999999 7653

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=98.99  E-value=1.5e-09  Score=100.88  Aligned_cols=97  Identities=22%  Similarity=0.201  Sum_probs=80.7

Q ss_pred             HHHHcCCccc-cCCCCCCCChHHHHHHHHHHHHhhC--CCeEEecCCCC-CChhhHHHHHHHHHHHHhhcC-----cchH
Q psy8250         115 LLKELGLLKC-KNSVLNVLSGGERKRVALAVQTIIV--QSGFVPQHDLT-VDTLTVHEHMTLMARLKMDRN-----LHHV  185 (212)
Q Consensus       115 ~l~~~gl~~~-~~~~~~~LSgGqrqRv~lA~al~~~--p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~~-----~h~~  185 (212)
                      +|..+||..+ +++...+|||||.||+-||..+=..  -=+++||||+. |.+....++++.|+++++.++     .||.
T Consensus       464 fL~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe  543 (935)
T COG0178         464 FLVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE  543 (935)
T ss_pred             HHHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH
Confidence            4555677653 7889999999999999999998665  35889999999 999999999999999998765     4998


Q ss_pred             HHHHHHHHH--------HHhcCeeecCCchhhhc
Q psy8250         186 ERARTVDAL--------LKELGLLKCRPADELNR  211 (212)
Q Consensus       186 ~~~~~~~~~--------l~~g~~~~~~~~~~~~~  211 (212)
                      +.++.++.+        .+-|.+++.|+++++.+
T Consensus       544 dti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~  577 (935)
T COG0178         544 DTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA  577 (935)
T ss_pred             HHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence            877776543        55788999999999854

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=98.97  E-value=1.4e-09  Score=96.62  Aligned_cols=76  Identities=24%  Similarity=0.240  Sum_probs=60.5

Q ss_pred             ccccccc-CCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECC---EeCCc-------ccccc
Q psy8250           2 ETFHPLF-GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG---LEVEK-------NLMVK   70 (212)
Q Consensus         2 ~~l~~~~-~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g---~~~~~-------~~~~~   70 (212)
                      +++++.| .+..+++.++ .+.+|++++|+||||+|||||+++|+++..| +.|.|.+.|   .++..       ..+++
T Consensus       143 ~~v~~~l~TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~p-d~gvv~liGergrev~e~~~~~l~~~r~r  220 (450)
T PRK06002        143 ARVETGLRTGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAF-DTVVIALVGERGREVREFLEDTLADNLKK  220 (450)
T ss_pred             ecceEEcCCCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCC-CeeeeeecccCCccHHHHhHHHHHHhhCC
Confidence            4567777 4567888886 9999999999999999999999999999888 589888854   55431       11346


Q ss_pred             eEEEEcCCC
Q psy8250          71 VSGFVPQHD   79 (212)
Q Consensus        71 ~i~~v~Q~~   79 (212)
                      .+++++|..
T Consensus       221 tI~vV~qsd  229 (450)
T PRK06002        221 AVAVVATSD  229 (450)
T ss_pred             eEEEEEcCC
Confidence            789999964

>TIGR00634 recN DNA repair protein RecN

Probab=98.97  E-value=1.1e-09  Score=100.82  Aligned_cols=61  Identities=25%  Similarity=0.245  Sum_probs=53.5

Q ss_pred             CCCChHHHHHHHHHHHHhhC----CCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHH
Q psy8250         130 NVLSGGERKRVALAVQTIIV----QSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERART  190 (212)
Q Consensus       130 ~~LSgGqrqRv~lA~al~~~----p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~  190 (212)
                      ..|||||+||++||++++..    |+++|||||++ +|+.....+.+.|++++...    +||++..+..
T Consensus       439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~  508 (563)
T TIGR00634       439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAH  508 (563)
T ss_pred             hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHh
Confidence            36899999999999999986    69999999999 99999999999999997533    3799887754

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=98.96  E-value=6.5e-09  Score=81.79  Aligned_cols=63  Identities=14%  Similarity=-0.006  Sum_probs=49.8

Q ss_pred             HcCCccccCCCCCCCChHHHH------HHHHHHHHhhCCCeEEecCCCC-CC---hhhHHHHHHHHHHHHhhc
Q psy8250         118 ELGLLKCKNSVLNVLSGGERK------RVALAVQTIIVQSGFVPQHDLT-VD---TLTVHEHMTLMARLKMDR  180 (212)
Q Consensus       118 ~~gl~~~~~~~~~~LSgGqrq------Rv~lA~al~~~p~llilDEPt~-lD---~~~~~~~~~~l~~l~~~~  180 (212)
                      ..|.....+..+..+|+|++|      ....+.+...+|+++++|||++ +|   ......+.+++..++...
T Consensus        58 ~~g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g  130 (187)
T cd01124          58 DEGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFG  130 (187)
T ss_pred             hcCCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCC
Confidence            445555677888899999998      5555555677999999999999 88   777788888888887654

A related protein is found in archaea.

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=98.95  E-value=1.9e-09  Score=105.41  Aligned_cols=67  Identities=18%  Similarity=0.188  Sum_probs=57.6

Q ss_pred             cCCCCCCCChHHHHHHHHHHHHhh--------CCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHH
Q psy8250         125 KNSVLNVLSGGERKRVALAVQTII--------VQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERART  190 (212)
Q Consensus       125 ~~~~~~~LSgGqrqRv~lA~al~~--------~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~  190 (212)
                      ..+++.+|||||+++++||+||+.        +|++||+||||+ ||+.+...+++.|..++..+     ++|..+....
T Consensus       943 ~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~ 1022 (1047)
T PRK10246        943 AVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKER 1022 (1047)
T ss_pred             CCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHh
Confidence            357899999999999999999996        899999999999 99999999999999998654     2686555433


Q ss_pred             H
Q psy8250         191 V  191 (212)
Q Consensus       191 ~  191 (212)
                      +
T Consensus      1023 i 1023 (1047)
T PRK10246       1023 I 1023 (1047)
T ss_pred             c
Confidence            3

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.95  E-value=1.1e-08  Score=75.13  Aligned_cols=98  Identities=22%  Similarity=0.349  Sum_probs=62.9

Q ss_pred             CCcEEEEECCCCccHHHHHHHHHcCCCCCCc-eEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHHHHHHhhhccc
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACISQRIQGDVD-GQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDR  101 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~-G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~  101 (212)
                      .+..+.|+||+|+||||+++.|+..+... . +.++++........                   .....          
T Consensus         1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~-~~~~~~~~~~~~~~~~-------------------~~~~~----------   50 (148)
T smart00382        1 PGEVILIVGPPGSGKTTLARALARELGPP-GGGVIYIDGEDILEEV-------------------LDQLL----------   50 (148)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhccCCC-CCCEEEECCEEccccC-------------------HHHHH----------
Confidence            36789999999999999999999887652 2 34444433221100                   00000          


Q ss_pred             CCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHH
Q psy8250         102 NLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHM  170 (212)
Q Consensus       102 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~  170 (212)
                                          ...........++++..+..+++|--.+|.++++||+.. .+........
T Consensus        51 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~  100 (148)
T smart00382       51 --------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLL  100 (148)
T ss_pred             --------------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHH
Confidence                                011122234567888888888888877899999999999 5655554443

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=98.94  E-value=6.8e-09  Score=83.23  Aligned_cols=37  Identities=32%  Similarity=0.471  Sum_probs=28.7

Q ss_pred             EEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEe
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLE   62 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~   62 (212)
                      ++.|.||+||||||+++.+.+.+.+...|.|.....+
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~   39 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDP   39 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCC
Confidence            6889999999999999999887764235666654444

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK10869 recombination and repair protein; Provisional

Probab=98.94  E-value=1.7e-09  Score=99.16  Aligned_cols=61  Identities=26%  Similarity=0.217  Sum_probs=53.3

Q ss_pred             CCChHHHHHHHHHHHHhh----CCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH
Q psy8250         131 VLSGGERKRVALAVQTII----VQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV  191 (212)
Q Consensus       131 ~LSgGqrqRv~lA~al~~----~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~  191 (212)
                      .+||||+||++||++++.    +|+++|||||++ +|..+...+.+.|++++...    +||++..++..
T Consensus       430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~a  499 (553)
T PRK10869        430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCG  499 (553)
T ss_pred             hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhC
Confidence            479999999999999997    589999999999 99999999999999997543    37998876543

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.90  E-value=2e-09  Score=105.87  Aligned_cols=70  Identities=24%  Similarity=0.263  Sum_probs=58.5

Q ss_pred             cCCCCCCCChHHHHHHHHHHHHh----hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHHHH
Q psy8250         125 KNSVLNVLSGGERKRVALAVQTI----IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVDAL  194 (212)
Q Consensus       125 ~~~~~~~LSgGqrqRv~lA~al~----~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~~~  194 (212)
                      .+.++..|||||++|++||++++    ..|+++|||||++ +|+.+...+.++|..++...    +||+...+..++.+
T Consensus      1083 ~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~~~d~~ 1161 (1179)
T TIGR02168      1083 KNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTMEVADQL 1161 (1179)
T ss_pred             ccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHHHhhhH
Confidence            45678899999999999999985    5679999999999 99999999999999986543    37998876554443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=98.88  E-value=3.7e-09  Score=80.52  Aligned_cols=33  Identities=6%  Similarity=-0.185  Sum_probs=26.6

Q ss_pred             CCChHHHHHHHHHHHHhhCCCeEEecCCCC-CCh
Q psy8250         131 VLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDT  163 (212)
Q Consensus       131 ~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~  163 (212)
                      ..+.++.++...+++...+|+++++|||++ ++.
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~  100 (165)
T cd01120          67 DPAAARLLSKAERLRERGGDDLIILDELTRLVRA  100 (165)
T ss_pred             CCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHH
Confidence            445666668888999999999999999997 544

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=98.87  E-value=1.7e-09  Score=85.29  Aligned_cols=67  Identities=16%  Similarity=0.228  Sum_probs=47.8

Q ss_pred             CCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccc-cc-ceEEEEcCCCCCCCCCCHHHHHHHH
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL-MV-KVSGFVPQHDLTVDTLTVHEHMTLM   94 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~-~~-~~i~~v~Q~~~~~~~ltv~e~l~~~   94 (212)
                      +|++++|+||||||||||+++|++++.+     ++++|.++.... .+ ...++.+|+...++..++..++.+.
T Consensus         2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~-----~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~   70 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIGSKIAALFSA-----KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYS   70 (176)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcCC-----EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHH
Confidence            6999999999999999999999998765     478888764321 22 2346666665555555666666543

>PRK01156 chromosome segregation protein; Provisional

Probab=98.86  E-value=5.9e-09  Score=100.69  Aligned_cols=64  Identities=22%  Similarity=0.152  Sum_probs=52.8

Q ss_pred             CCCCCCChHHHHHHHH------HHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHH-Hhhc-------CcchHHHHHH
Q psy8250         127 SVLNVLSGGERKRVAL------AVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARL-KMDR-------NLHHVERART  190 (212)
Q Consensus       127 ~~~~~LSgGqrqRv~l------A~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l-~~~~-------~~h~~~~~~~  190 (212)
                      ..+..|||||++|++|      |++++.+|++++|||||+ ||+.....+.++|... +...       .|||.+.+..
T Consensus       797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~  875 (895)
T PRK01156        797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSV  875 (895)
T ss_pred             CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHh
Confidence            4678999999999975      589999999999999999 9999999999998754 3211       2799887643

>PRK03918 chromosome segregation protein; Provisional

Probab=98.86  E-value=2e-09  Score=103.57  Aligned_cols=63  Identities=24%  Similarity=0.218  Sum_probs=52.7

Q ss_pred             CCCCCCCChHHHH------HHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHH
Q psy8250         126 NSVLNVLSGGERK------RVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERA  188 (212)
Q Consensus       126 ~~~~~~LSgGqrq------Rv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~  188 (212)
                      +.++..|||||+|      |++||++++.+|+++|+||||+ +|+..+..+.++|..+....     +||+.+..
T Consensus       783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~  857 (880)
T PRK03918        783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELK  857 (880)
T ss_pred             cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH
Confidence            4567899999999      5556667889999999999999 99999999999999886542     37997654

>PRK13830 conjugal transfer protein TrbE; Provisional

Probab=98.82  E-value=6.8e-08  Score=92.47  Aligned_cols=43  Identities=7%  Similarity=0.011  Sum_probs=37.0

Q ss_pred             hhCCCeEEecCCCC-C-ChhhHHHHHHHHHHHHhhc-----CcchHHHHH
Q psy8250         147 IIVQSGFVPQHDLT-V-DTLTVHEHMTLMARLKMDR-----NLHHVERAR  189 (212)
Q Consensus       147 ~~~p~llilDEPt~-l-D~~~~~~~~~~l~~l~~~~-----~~h~~~~~~  189 (212)
                      ..+|+++++|||+. | |+.....+.+.++++++.+     .||+++.+.
T Consensus       650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~  699 (818)
T PRK13830        650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAE  699 (818)
T ss_pred             CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh
Confidence            46999999999999 9 7899999999999997754     379988774

>PRK01889 GTPase RsgA; Reviewed

Probab=98.80  E-value=1.3e-08  Score=88.72  Aligned_cols=77  Identities=19%  Similarity=0.266  Sum_probs=57.3

Q ss_pred             eeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHHH
Q psy8250          14 KESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMT   92 (212)
Q Consensus        14 l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~   92 (212)
                      ++.+.-.+.+|++++|+|+||+|||||++.|+|...+ ..|+|.+++.........+.+++++|...+++. +...++.
T Consensus       185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~-~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dt-pG~~~~~  261 (356)
T PRK01889        185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQ-KTGAVREDDSKGRHTTTHRELHPLPSGGLLIDT-PGMRELQ  261 (356)
T ss_pred             HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhccc-ceeeEEECCCCCcchhhhccEEEecCCCeecCC-Cchhhhc
Confidence            3444455778999999999999999999999999988 699999987543222334567889988766653 4444443

>TIGR00235 udk uridine kinase

Probab=98.76  E-value=2.9e-09  Score=85.80  Aligned_cols=29  Identities=34%  Similarity=0.505  Sum_probs=26.8

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcCCCC
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQRIQG   50 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p   50 (212)
                      ++|++++|+||||||||||++.|++++.+
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~   32 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK   32 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            67999999999999999999999998764

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK08149 ATP synthase SpaL; Validated

Probab=98.76  E-value=1.8e-08  Score=89.28  Aligned_cols=70  Identities=20%  Similarity=0.173  Sum_probs=56.6

Q ss_pred             CCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCc---eEEEECCEeCCcc-------cccceEEEEcCC
Q psy8250           9 GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVD---GQILLNGLEVEKN-------LMVKVSGFVPQH   78 (212)
Q Consensus         9 ~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~---G~I~~~g~~~~~~-------~~~~~i~~v~Q~   78 (212)
                      .+..+++++ +.+.+|++++|+||||+|||||+++|++...+ +.   |.|..+|.++...       ...+++++|+..
T Consensus       137 tGi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~-dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~  214 (428)
T PRK08149        137 TGVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEA-DVFVIGLIGERGREVTEFVESLRASSRREKCVLVYAT  214 (428)
T ss_pred             CCcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCC-CeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEEC
Confidence            345799999 99999999999999999999999999998877 45   8899999887431       123567788765


Q ss_pred             CC
Q psy8250          79 DL   80 (212)
Q Consensus        79 ~~   80 (212)
                      ..
T Consensus       215 sd  216 (428)
T PRK08149        215 SD  216 (428)
T ss_pred             CC
Confidence            43

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=98.72  E-value=1.4e-08  Score=65.98  Aligned_cols=38  Identities=32%  Similarity=0.471  Sum_probs=31.4

Q ss_pred             eeeeeEEEEcC-CcEEEEECCCCccHHHHHHHHHcCCCC
Q psy8250          13 YKESLSGIAES-GSLLAIMGPSGAGKTTLLACISQRIQG   50 (212)
Q Consensus        13 ~l~~vs~~i~~-Ge~~~iiGpnGaGKSTLl~~i~g~~~p   50 (212)
                      .+++.++++.+ |.++.|.||||||||||+.+|.=.+.+
T Consensus        11 ~f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~   49 (62)
T PF13555_consen   11 SFDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYG   49 (62)
T ss_pred             ccCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcC
Confidence            34556777875 579999999999999999999877665

>PRK09862 putative ATP-dependent protease; Provisional

Probab=98.72  E-value=9.3e-09  Score=92.95  Aligned_cols=61  Identities=25%  Similarity=0.401  Sum_probs=55.2

Q ss_pred             cccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeC
Q psy8250           2 ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV   63 (212)
Q Consensus         2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~   63 (212)
                      .++++.||...+++++++.+..|+.++|+||||+|||||++.|.|+++| .+|++.+....+
T Consensus       188 ~d~~~v~Gq~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp-~~g~e~le~~~i  248 (506)
T PRK09862        188 HDLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPD-LSNEEALESAAI  248 (506)
T ss_pred             cCeEEEECcHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCC-CCCcEEEecchh
Confidence            4778888888899999999999999999999999999999999999988 699888876554

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=98.70  E-value=3.2e-08  Score=75.30  Aligned_cols=63  Identities=14%  Similarity=0.112  Sum_probs=42.9

Q ss_pred             HHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHHHh-----hCCCeEEecCCCC-CChhhHHHHHHHHHHH
Q psy8250         110 RTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQTI-----IVQSGFVPQHDLT-VDTLTVHEHMTLMARL  176 (212)
Q Consensus       110 ~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~al~-----~~p~llilDEPt~-lD~~~~~~~~~~l~~l  176 (212)
                      ..+..++..++.. -....++..+|.+++++........     ..|+++    |+| +|.....++++.|.++
T Consensus       100 ~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         100 LEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW  169 (170)
T ss_pred             HHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence            3455666666643 1234456778999988877666533     335555    889 9999999999988764

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=98.70  E-value=9.1e-08  Score=88.91  Aligned_cols=110  Identities=16%  Similarity=0.169  Sum_probs=72.3

Q ss_pred             CCcEEEEECCCCccHHHHHHHHHcCCCCCCce--------EEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHHHHH
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACISQRIQGDVDG--------QILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLM   94 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G--------~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~   94 (212)
                      ..+.++|+||||+|||||.++|.+...+ ..|        -+.+++..+..                  ......+..++
T Consensus       174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~-~~~~~~~~~~~fv~i~~~~l~~------------------d~~~i~~~llg  234 (615)
T TIGR02903       174 FPQHIILYGPPGVGKTTAARLALEEAKK-LKHTPFAEDAPFVEVDGTTLRW------------------DPREVTNPLLG  234 (615)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHhhhh-ccCCcccCCCCeEEEechhccC------------------CHHHHhHHhcC
Confidence            3567999999999999999999987754 233        24444433210                  00000011111


Q ss_pred             HhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCCCChhhHHHHHHHHH
Q psy8250          95 ARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHMTLMA  174 (212)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~lD~~~~~~~~~~l~  174 (212)
                             .. .......+.+.++.+|+.......+.++|||                +|++||...||+..+..+++.|.
T Consensus       235 -------~~-~~~~~~~a~~~l~~~gl~~~~~g~v~~asgG----------------vL~LDEi~~Ld~~~Q~~Ll~~Le  290 (615)
T TIGR02903       235 -------SV-HDPIYQGARRDLAETGVPEPKTGLVTDAHGG----------------VLFIDEIGELDPLLQNKLLKVLE  290 (615)
T ss_pred             -------Cc-cHHHHHHHHHHHHHcCCCchhcCchhhcCCC----------------eEEEeccccCCHHHHHHHHHHHh
Confidence                   00 1111223455688889988888889999999                99999943399999999999987


Q ss_pred             H
Q psy8250         175 R  175 (212)
Q Consensus       175 ~  175 (212)
                      +
T Consensus       291 ~  291 (615)
T TIGR02903       291 D  291 (615)
T ss_pred             h
Confidence            5

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.69  E-value=1.5e-08  Score=99.81  Aligned_cols=67  Identities=18%  Similarity=0.123  Sum_probs=55.6

Q ss_pred             CCCCCCCChHHHHHHHHHHHHhh----CCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH
Q psy8250         126 NSVLNVLSGGERKRVALAVQTII----VQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD  192 (212)
Q Consensus       126 ~~~~~~LSgGqrqRv~lA~al~~----~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~  192 (212)
                      .+++..||||||++++||++|+.    .|+++|||||++ ||+.....+.++|.+++...    .||+......++
T Consensus      1069 ~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~~~~~d 1144 (1164)
T TIGR02169      1069 VQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMIEYAD 1144 (1164)
T ss_pred             CCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHhcc
Confidence            34567899999999999999986    679999999999 99999999999999986543    379876553333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.69  E-value=2.5e-08  Score=81.66  Aligned_cols=74  Identities=24%  Similarity=0.510  Sum_probs=49.7

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcCCCCCCceE----EEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHHHHHHhh
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQ----ILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARL   97 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~----I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~   97 (212)
                      .+..++||.||||||||||.+.|++.+.+ .+|.    |.+++...... .....+++++.. .+..+++.+...+...+
T Consensus        31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~-~~g~~~v~i~~D~~~~~~~-~~~~~g~~~~~~-~~~~~d~~~~~~~l~~l  107 (229)
T PRK09270         31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQ-DGELPAIQVPMDGFHLDNA-VLDAHGLRPRKG-APETFDVAGLAALLRRL  107 (229)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhhh-ccCCceEEEecccccCCHH-HHHhcccccccC-CCCCCCHHHHHHHHHHH
Confidence            45779999999999999999999999988 5887    55554332221 223356766532 34556777766665444


Q ss_pred             h
Q psy8250          98 K   98 (212)
Q Consensus        98 ~   98 (212)
                      +
T Consensus       108 ~  108 (229)
T PRK09270        108 R  108 (229)
T ss_pred             H
Confidence            3

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=98.68  E-value=7.9e-08  Score=79.15  Aligned_cols=123  Identities=21%  Similarity=0.305  Sum_probs=70.6

Q ss_pred             CcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECC-EeCCcccccceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccC
Q psy8250          24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG-LEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRN  102 (212)
Q Consensus        24 Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g-~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~  102 (212)
                      |.+..|+||.|+|||||.-.++=-.   ..|.=++.+ ....   ....+-|+.=+.                       
T Consensus         1 g~~~ll~g~~G~GKS~lal~la~~v---a~G~~~~g~~~~~~---~~~~Vlyi~~Ed-----------------------   51 (239)
T cd01125           1 GYVSALVAPGGTGKSSLLLVLALAM---ALGKNLFGGGLKVT---EPGRVVYLSAED-----------------------   51 (239)
T ss_pred             CceeEEEcCCCCCHHHHHHHHHHHH---hcCccccCCccccC---CCceEEEEECCC-----------------------
Confidence            6788999999999999998886321   233222221 1110   112233442211                       


Q ss_pred             CCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHH----------------HHhhCCCeEEecCCCC------
Q psy8250         103 LHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAV----------------QTIIVQSGFVPQHDLT------  160 (212)
Q Consensus       103 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~----------------al~~~p~llilDEPt~------  160 (212)
                       +..+...++..+...+++.+..++...  .+|+.|++.+++                +...+|+++|+| |++      
T Consensus        52 -~~~~i~~Rl~~i~~~~~~~~~~~rl~~--~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~~~~~  127 (239)
T cd01125          52 -PREEIHRRLEAILQHLEPDDAGDRLFI--DSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSFHGVS  127 (239)
T ss_pred             -CHHHHHHHHHHHHhhcCCcCcccceEE--eccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHhCCCC
Confidence             112233445555555554433333222  245556555443                345799999999 764      


Q ss_pred             -CChhhHHHHHHHHHHHHhh
Q psy8250         161 -VDTLTVHEHMTLMARLKMD  179 (212)
Q Consensus       161 -lD~~~~~~~~~~l~~l~~~  179 (212)
                       +|+.....+++.|.+++.+
T Consensus       128 ~~d~~~~~~~~~~L~~~a~~  147 (239)
T cd01125         128 ENDNGAMDAVIKALRRIAAQ  147 (239)
T ss_pred             cCCHHHHHHHHHHHHHHHHH
Confidence             5888888899999888765

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=98.67  E-value=1.9e-08  Score=85.15  Aligned_cols=73  Identities=15%  Similarity=0.218  Sum_probs=49.9

Q ss_pred             CcEEEEECCCCccHHHHHHHHHcCCC--CCCceEEEECCEeCC--cccccceEEEEcCCCCCCCCCCHHHHHHHHHhhh
Q psy8250          24 GSLLAIMGPSGAGKTTLLACISQRIQ--GDVDGQILLNGLEVE--KNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLK   98 (212)
Q Consensus        24 Ge~~~iiGpnGaGKSTLl~~i~g~~~--p~~~G~I~~~g~~~~--~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~   98 (212)
                      -.++||.||||||||||+++|.+++.  | .+|.|.+-+.+-.  .....+..+++ |...++..+++...+.+...++
T Consensus        62 p~IIGIaG~~GSGKSTlar~L~~ll~~~~-~~g~V~vi~~D~f~~~~~~l~~~g~~-~~~g~P~s~D~~~l~~~L~~Lk  138 (290)
T TIGR00554        62 PYIISIAGSVAVGKSTTARILQALLSRWP-EHRKVELITTDGFLHPNQVLKERNLM-KKKGFPESYDMHRLVKFLSDLK  138 (290)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHhhcC-CCCceEEEecccccccHHHHHHcCCc-cccCCChhccHHHHHHHHHHHH
Confidence            46999999999999999999999886  5 4777766444321  11122234543 6666677778877777655543

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.67  E-value=2.7e-08  Score=78.83  Aligned_cols=51  Identities=35%  Similarity=0.513  Sum_probs=38.8

Q ss_pred             CcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccc---ccceEEEEcCC
Q psy8250          24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL---MVKVSGFVPQH   78 (212)
Q Consensus        24 Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~---~~~~i~~v~Q~   78 (212)
                      |++++|+||||||||||+++|++...+    .+.+.+..++...   ..+.+++++|+
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~   55 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQT----QLLVAHRYITRPASAGSENHIALSEQE   55 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCC----eEEEcCEECCCccchhHHhheeEcHHH
Confidence            789999999999999999999997654    4777777665422   23456777775

>PRK07594 type III secretion system ATPase SsaN; Validated

Probab=98.66  E-value=2.9e-08  Score=88.10  Aligned_cols=57  Identities=21%  Similarity=0.311  Sum_probs=49.0

Q ss_pred             ccccc-CCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEe
Q psy8250           4 FHPLF-GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLE   62 (212)
Q Consensus         4 l~~~~-~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~   62 (212)
                      ++..| .+..+++++ |.+.+|+.++|+|+||+|||||+++|++...+ +.|.+.+.|..
T Consensus       135 v~~~l~tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~-d~~vi~~iGeR  192 (433)
T PRK07594        135 ITQPLMTGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDA-DSNVLVLIGER  192 (433)
T ss_pred             HhheeCCCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCC-CEEEEEEECCC
Confidence            44555 467899999 99999999999999999999999999999988 58888776653

>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein

Probab=98.64  E-value=5e-08  Score=83.73  Aligned_cols=50  Identities=30%  Similarity=0.321  Sum_probs=44.5

Q ss_pred             CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCE
Q psy8250          10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGL   61 (212)
Q Consensus        10 ~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~   61 (212)
                      +..+++.+ +.+.+|++++|+|+||+|||||+++|++...+ +.|.+..-|.
T Consensus        56 Gi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~-~~~vi~~iGe  105 (326)
T cd01136          56 GVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTA-DVNVIALIGE  105 (326)
T ss_pred             CcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCC-CEEEEEEEec
Confidence            46789999 99999999999999999999999999999988 5787766553

This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=98.62  E-value=3.9e-07  Score=74.70  Aligned_cols=50  Identities=12%  Similarity=-0.057  Sum_probs=36.7

Q ss_pred             CCCChHHHHHHHHHHHHhh--CCCeEEecCCCC-CC---hhhHHHHHHHHHHHHhh
Q psy8250         130 NVLSGGERKRVALAVQTII--VQSGFVPQHDLT-VD---TLTVHEHMTLMARLKMD  179 (212)
Q Consensus       130 ~~LSgGqrqRv~lA~al~~--~p~llilDEPt~-lD---~~~~~~~~~~l~~l~~~  179 (212)
                      ...|.++.+.+..+..++.  +|+++++|||++ +|   ......+++.++.+++.
T Consensus        99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~  154 (234)
T PRK06067         99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDL  154 (234)
T ss_pred             ccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhC
Confidence            3457889999999999998  899999999996 44   34444554555555544

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.60  E-value=3.9e-08  Score=84.39  Aligned_cols=72  Identities=13%  Similarity=0.163  Sum_probs=53.4

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---------cccceEEEEcCCCCCCCCCCHHHHHH
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---------LMVKVSGFVPQHDLTVDTLTVHEHMT   92 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---------~~~~~i~~v~Q~~~~~~~ltv~e~l~   92 (212)
                      .+|++++++|||||||||++..|++.+.+ ..++|.+-+.+....         ..+..+.+++|.....+..++++++.
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~-~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~  190 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYKA-QGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQ  190 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHh-cCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHH
Confidence            57999999999999999999999999887 578998877665321         12344788888655555556677765


Q ss_pred             HH
Q psy8250          93 LM   94 (212)
Q Consensus        93 ~~   94 (212)
                      ..
T Consensus       191 ~~  192 (318)
T PRK10416        191 AA  192 (318)
T ss_pred             HH
Confidence            43

>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase

Probab=98.60  E-value=1.1e-07  Score=84.63  Aligned_cols=51  Identities=25%  Similarity=0.305  Sum_probs=45.5

Q ss_pred             CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEe
Q psy8250          10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLE   62 (212)
Q Consensus        10 ~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~   62 (212)
                      +..+++++ |.+.+|++++|+|+||+|||||+++|++...+ +.|.+...|.+
T Consensus       132 G~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~-~~~vi~~iG~~  182 (422)
T TIGR02546       132 GVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASA-DVNVIALIGER  182 (422)
T ss_pred             Cceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCC-CEEEEEEEccC
Confidence            56799999 99999999999999999999999999999988 58888775543

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=98.58  E-value=1e-07  Score=83.03  Aligned_cols=119  Identities=22%  Similarity=0.261  Sum_probs=63.3

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcCCCC--CCceEEEECCEeCCc--ccccceEEEEcCCCCCCCCCCHHHHHHHHHhh
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQRIQG--DVDGQILLNGLEVEK--NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARL   97 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p--~~~G~I~~~g~~~~~--~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~   97 (212)
                      .+|..++|+||+||||||++++|++.+.+  +..+.|.....++.-  .......+++.|...--...+..+.+.-..+.
T Consensus       132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~  211 (358)
T TIGR02524       132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRR  211 (358)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhcc
Confidence            47899999999999999999999998742  123356555544431  12223346777753211112344444332222


Q ss_pred             hcccC-CCHHHHHHHHHHHHHHc-------------CCccccCCCCCCCChHHHHHH
Q psy8250          98 KMDRN-LHHVERARTVDALLKEL-------------GLLKCKNSVLNVLSGGERKRV  140 (212)
Q Consensus        98 ~~~~~-~~~~~~~~~~~~~l~~~-------------gl~~~~~~~~~~LSgGqrqRv  140 (212)
                      ....- .......+.+..+++..             +......+....+|+||+--+
T Consensus       212 ~Pd~i~vGEiRd~et~~~al~aa~tGh~v~tTlHa~~~~~~i~Rl~~~~~~~~~~~~  268 (358)
T TIGR02524       212 KPHAILVGEARDAETISAALEAALTGHPVYTTLHSSGVAETIRRLVGSFPAEERIGR  268 (358)
T ss_pred             CCCEEeeeeeCCHHHHHHHHHHHHcCCcEEEeeccCCHHHHHHHHHHhCCccchhhH
Confidence            11100 01111223344455552             222334555677999988544

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>PRK09099 type III secretion system ATPase; Provisional

Probab=98.58  E-value=8.4e-08  Score=85.39  Aligned_cols=52  Identities=25%  Similarity=0.333  Sum_probs=46.9

Q ss_pred             CCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEe
Q psy8250           9 GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLE   62 (212)
Q Consensus         9 ~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~   62 (212)
                      .+..+++++ +.+.+|++++|+|+||+|||||+++|++...+ +.|.|.+.|+.
T Consensus       149 TGi~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~-d~~vi~~iGer  200 (441)
T PRK09099        149 TGVRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQC-DVNVIALIGER  200 (441)
T ss_pred             CCceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCC-CeEEEEEEccC
Confidence            356799999 99999999999999999999999999999988 58999888854

>PLN02318 phosphoribulokinase/uridine kinase

Probab=98.56  E-value=7.6e-08  Score=87.86  Aligned_cols=63  Identities=19%  Similarity=0.181  Sum_probs=51.0

Q ss_pred             cEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHHHH
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTL   93 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~   93 (212)
                      -++||.||||||||||.+.|++.+ | ..|.|.+||....    .+.+.+.+++|..++..++.+++.-
T Consensus        66 iIIGIaGpSGSGKTTLAk~LaglL-p-~vgvIsmDdy~~~----~~~i~~nfD~P~a~D~d~L~enL~~  128 (656)
T PLN02318         66 ILVGVAGPSGAGKTVFTEKVLNFM-P-SIAVISMDNYNDS----SRIIDGNFDDPRLTDYDTLLDNIHD  128 (656)
T ss_pred             EEEEEECCCCCcHHHHHHHHHhhC-C-CcEEEEEcceecc----hhhhCccCCChhhcchhHHHHHHHH
Confidence            489999999999999999999987 5 4899999997421    2235678898888887788888754

>PRK13891 conjugal transfer protein TrbE; Provisional

Probab=98.56  E-value=1.7e-06  Score=83.24  Aligned_cols=49  Identities=4%  Similarity=-0.056  Sum_probs=41.9

Q ss_pred             HHHHHhhCCCeEEecCCCC-C-ChhhHHHHHHHHHHHHhhc-----CcchHHHHHH
Q psy8250         142 LAVQTIIVQSGFVPQHDLT-V-DTLTVHEHMTLMARLKMDR-----NLHHVERART  190 (212)
Q Consensus       142 lA~al~~~p~llilDEPt~-l-D~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~  190 (212)
                      |++++..+|+++++|||+. + |+..+..+.+.++.+++.+     .||+++.+..
T Consensus       680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~  735 (852)
T PRK13891        680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN  735 (852)
T ss_pred             HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence            6778889999999999999 8 7899999999999987654     3799987764

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.55  E-value=1.5e-07  Score=79.71  Aligned_cols=75  Identities=19%  Similarity=0.240  Sum_probs=52.6

Q ss_pred             EEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEE---CCEeCCcc--ccc-ceEEEEcCCCCC---C-CCCCHH
Q psy8250          19 GIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILL---NGLEVEKN--LMV-KVSGFVPQHDLT---V-DTLTVH   88 (212)
Q Consensus        19 ~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~---~g~~~~~~--~~~-~~i~~v~Q~~~~---~-~~ltv~   88 (212)
                      ..+. +++++++|+||+|||||+|.|.|...+ ..|+|..   .|...+..  ... ...+++.+.|.+   . ..++..
T Consensus       157 ~~L~-~k~~~~~G~sg~GKSTlin~l~~~~~~-~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~  234 (287)
T cd01854         157 EYLK-GKTSVLVGQSGVGKSTLINALLPDLDL-ATGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFREFGLLHIDPE  234 (287)
T ss_pred             hhhc-cceEEEECCCCCCHHHHHHHHhchhhc-cccceeccCCCCCcccceEEEEEcCCCCEEEECCCCCccCCccCCHH
Confidence            3344 589999999999999999999999887 5898875   34333321  111 225789998876   2 457777


Q ss_pred             HHHHHHH
Q psy8250          89 EHMTLMA   95 (212)
Q Consensus        89 e~l~~~~   95 (212)
                      +...++.
T Consensus       235 ~~~~~f~  241 (287)
T cd01854         235 ELAHYFP  241 (287)
T ss_pred             HHHHHhH
Confidence            7665543

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK07960 fliI flagellum-specific ATP synthase; Validated

Probab=98.55  E-value=1e-07  Score=84.74  Aligned_cols=66  Identities=23%  Similarity=0.219  Sum_probs=51.4

Q ss_pred             ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCc---eEEEECCEeCCcc------cccceEEEEcCCC
Q psy8250          12 NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVD---GQILLNGLEVEKN------LMVKVSGFVPQHD   79 (212)
Q Consensus        12 ~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~---G~I~~~g~~~~~~------~~~~~i~~v~Q~~   79 (212)
                      .+++.+ |.+.+|++++|+|+||+|||||+++|+++..+ +.   |.|.+.|.++...      .-....++|+|..
T Consensus       164 raID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~-d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~  238 (455)
T PRK07960        164 RAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQA-DVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAP  238 (455)
T ss_pred             eeeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCCC-CEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEEC
Confidence            455444 99999999999999999999999999999887 44   8999999988431      1123457777754

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=98.54  E-value=6.6e-07  Score=77.64  Aligned_cols=40  Identities=30%  Similarity=0.516  Sum_probs=31.0

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCE
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGL   61 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~   61 (212)
                      .++.++.|.||+||||||+++++.+.+.+...+.|..-..
T Consensus       120 ~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEd  159 (343)
T TIGR01420       120 RPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIED  159 (343)
T ss_pred             hcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcC
Confidence            5688999999999999999999998665323566655433

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.54  E-value=6.8e-08  Score=77.36  Aligned_cols=28  Identities=43%  Similarity=0.729  Sum_probs=26.2

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcCCC
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      ++|++++|+||||||||||+++|++.++
T Consensus         3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~   30 (205)
T PRK00300          3 RRGLLIVLSGPSGAGKSTLVKALLERDP   30 (205)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            5899999999999999999999999874

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=98.53  E-value=3.1e-06  Score=66.82  Aligned_cols=64  Identities=17%  Similarity=0.139  Sum_probs=45.1

Q ss_pred             HHHHHHHHcCCc-cccCCCCCCCChHHHHHHH--HHHHHhh-CCCeEEecCCCC-CChhhHHHHHHHHHHHHh
Q psy8250         111 TVDALLKELGLL-KCKNSVLNVLSGGERKRVA--LAVQTII-VQSGFVPQHDLT-VDTLTVHEHMTLMARLKM  178 (212)
Q Consensus       111 ~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~--lA~al~~-~p~llilDEPt~-lD~~~~~~~~~~l~~l~~  178 (212)
                      .+.++++..++. -..-.++..+|+|++|++.  +++.+-. .++++    |+| +|..+..++++.|.++..
T Consensus       126 ~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~  194 (196)
T PRK00454        126 QMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLA  194 (196)
T ss_pred             HHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhc
Confidence            445666666664 3345567789999999987  5555543 34443    899 999999999999887643

>PRK00098 GTPase RsgA; Reviewed

Probab=98.52  E-value=2.8e-07  Score=78.43  Aligned_cols=70  Identities=21%  Similarity=0.316  Sum_probs=50.2

Q ss_pred             CCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEE---CCEeCCcc-cc--cceEEEEcCCCCCC----CCCCHHHHHH
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILL---NGLEVEKN-LM--VKVSGFVPQHDLTV----DTLTVHEHMT   92 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~---~g~~~~~~-~~--~~~i~~v~Q~~~~~----~~ltv~e~l~   92 (212)
                      +|++++++|+||+|||||+|.|.|...+ ..|+|..   .|+..+.. .+  ....+|+.+.|.+.    ..++..+...
T Consensus       163 ~gk~~~~~G~sgvGKStlin~l~~~~~~-~~g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~  241 (298)
T PRK00098        163 AGKVTVLAGQSGVGKSTLLNALAPDLEL-KTGEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSSFGLHDLEAEELEH  241 (298)
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcCC-CCcceeccCCCCCcccccEEEEEcCCCcEEEECCCcCccCCCCCCHHHHHH
Confidence            5899999999999999999999998887 5899876   44444321 11  12357888888765    4456555444


Q ss_pred             H
Q psy8250          93 L   93 (212)
Q Consensus        93 ~   93 (212)
                      +
T Consensus       242 ~  242 (298)
T PRK00098        242 Y  242 (298)
T ss_pred             H
Confidence            3

>PRK05399 DNA mismatch repair protein MutS; Provisional

Probab=98.52  E-value=2.4e-07  Score=88.99  Aligned_cols=124  Identities=19%  Similarity=0.140  Sum_probs=73.6

Q ss_pred             eeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCC-CCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHH
Q psy8250          13 YKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ-GDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHM   91 (212)
Q Consensus        13 ~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~-p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l   91 (212)
                      +-+|+++. +.+.++.|.|||.+||||+||.++-..- . ..|.                  |||-...   .+++.+.+
T Consensus       597 vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilA-q~G~------------------~VPa~~a---~i~~~d~I  653 (854)
T PRK05399        597 VPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLA-QIGS------------------FVPAESA---RIGIVDRI  653 (854)
T ss_pred             EecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHH-hcCC------------------ceeccce---EecccCee
Confidence            44566666 6678999999999999999999864321 1 1221                  2222110   00111111


Q ss_pred             HHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhh--CCCeEEecCC---CC-CChhh
Q psy8250          92 TLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTII--VQSGFVPQHD---LT-VDTLT  165 (212)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~--~p~llilDEP---t~-lD~~~  165 (212)
                                              +.++|-   .+.....+|.-+.....++..|-.  +++++|+|||   |+ +|..+
T Consensus       654 ------------------------~triga---~d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~a  706 (854)
T PRK05399        654 ------------------------FTRIGA---SDDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLS  706 (854)
T ss_pred             ------------------------eeccCc---ccccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHH
Confidence                                    111121   122334577777777777777755  8999999999   88 88444


Q ss_pred             HHHHHHHHHHHHhhc------CcchHHHH
Q psy8250         166 VHEHMTLMARLKMDR------NLHHVERA  188 (212)
Q Consensus       166 ~~~~~~~l~~l~~~~------~~h~~~~~  188 (212)
                        ..+.++..+.+..      .||+.+..
T Consensus       707 --ia~aile~l~~~~~~~~l~aTH~~el~  733 (854)
T PRK05399        707 --IAWAVAEYLHDKIGAKTLFATHYHELT  733 (854)
T ss_pred             --HHHHHHHHHHhcCCceEEEEechHHHH
Confidence              4555666655432      27885544

>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A

Probab=98.52  E-value=2e-07  Score=65.44  Aligned_cols=50  Identities=20%  Similarity=0.321  Sum_probs=37.9

Q ss_pred             CCCCCCCChHHHH-HHHHHHHH------hh------CCCeEEecCCCC-CChhhHHHHHHHHHH
Q psy8250         126 NSVLNVLSGGERK-RVALAVQT------II------VQSGFVPQHDLT-VDTLTVHEHMTLMAR  175 (212)
Q Consensus       126 ~~~~~~LSgGqrq-Rv~lA~al------~~------~p~llilDEPt~-lD~~~~~~~~~~l~~  175 (212)
                      .+..+.+||||+| .+.+|.++      ..      .|.+++|||||+ +|+.....+++++++
T Consensus        27 ~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~   90 (90)
T PF13558_consen   27 SRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ   90 (90)
T ss_dssp             EEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred             eccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence            4667899999994 44444333      22      379999999999 999999999998864

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=98.51  E-value=3.1e-07  Score=72.04  Aligned_cols=33  Identities=45%  Similarity=0.819  Sum_probs=27.2

Q ss_pred             CcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEE
Q psy8250          24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILL   58 (212)
Q Consensus        24 Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~   58 (212)
                      |++++|+||||||||||++.|++.+.+  .|.+.+
T Consensus         1 ~~~~~i~G~sGsGKttl~~~l~~~~~~--~~~~~~   33 (179)
T TIGR02322         1 GRLIYVVGPSGAGKDTLLDYARARLAG--DPRVHF   33 (179)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCc--CCcEEE
Confidence            678999999999999999999998654  354544

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI

Probab=98.51  E-value=2e-07  Score=82.57  Aligned_cols=53  Identities=26%  Similarity=0.268  Sum_probs=47.4

Q ss_pred             CCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeC
Q psy8250           9 GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV   63 (212)
Q Consensus         9 ~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~   63 (212)
                      .+..+++++ +.+.+|++++|+|+||+|||||+++|++...+ +.|.|.+.|++.
T Consensus       123 tGi~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~-~~gvi~~~Ger~  175 (413)
T TIGR03497       123 TGIKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKA-DINVIALIGERG  175 (413)
T ss_pred             ccceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CeEEEEEEccch
Confidence            356789999 99999999999999999999999999999888 589888888654

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=98.50  E-value=1.4e-07  Score=84.16  Aligned_cols=170  Identities=14%  Similarity=0.112  Sum_probs=96.6

Q ss_pred             CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc-----------ccccceEEEEcCC
Q psy8250          10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-----------NLMVKVSGFVPQH   78 (212)
Q Consensus        10 ~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~-----------~~~~~~i~~v~Q~   78 (212)
                      +..+++++ |.+.+|+.++|+|+||+|||||+++|++...+ +.|.+...|..-..           ..+++.+-++.+-
T Consensus       150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~-~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~  227 (440)
T TIGR01026       150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEA-DVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATS  227 (440)
T ss_pred             eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCC-CEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECC
Confidence            45789999 99999999999999999999999999999888 57777665543321           1122333333332


Q ss_pred             CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250          79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD  158 (212)
Q Consensus        79 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP  158 (212)
                      .     .+..+-..-+ .           ....+.+.+..-|-.-..  ...+|+-       .|+|+=  -=-+.+.||
T Consensus       228 d-----~~p~~r~~~~-~-----------~a~t~AE~frd~G~~Vll--~~DslTr-------~A~A~R--Eisl~~ge~  279 (440)
T TIGR01026       228 D-----QSPLLRLKGA-Y-----------VATAIAEYFRDQGKDVLL--LMDSVTR-------FAMAQR--EIGLAAGEP  279 (440)
T ss_pred             C-----CCHHHHHHHH-H-----------HHHHHHHHHHHCCCCEEE--EEeChHH-------HHHHHH--HHHHhcCCC
Confidence            1     1222111100 0           011122222222432110  1122221       111110  000345676


Q ss_pred             CC---CChhhHHHHHHHHHHHHhhcC------------cchHH-HHHHHHHHHHhcCeeecCCchhh
Q psy8250         159 LT---VDTLTVHEHMTLMARLKMDRN------------LHHVE-RARTVDALLKELGLLKCRPADEL  209 (212)
Q Consensus       159 t~---lD~~~~~~~~~~l~~l~~~~~------------~h~~~-~~~~~~~~l~~g~~~~~~~~~~~  209 (212)
                      .+   .|+.....+.+++.+......            .||+. .+.+....+.+|+++.++..++.
T Consensus       280 P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~dpi~d~~~~i~dG~ivLsr~la~~  346 (440)
T TIGR01026       280 PATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMNEPIADSVRGILDGHIVLSRALAQR  346 (440)
T ss_pred             CcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCCcchhhhhccccceEEEEecchhhC
Confidence            44   699999999999988764421            37763 34455567779999888876654

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>TIGR00611 recf recF protein

Probab=98.50  E-value=1.8e-07  Score=81.84  Aligned_cols=59  Identities=14%  Similarity=0.120  Sum_probs=49.3

Q ss_pred             CCCChHHHHHHHHHHHHhh---------CCCeEEecCCCC-CChhhHHHHHHHHHHHHhh--cCcchHHHH
Q psy8250         130 NVLSGGERKRVALAVQTII---------VQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD--RNLHHVERA  188 (212)
Q Consensus       130 ~~LSgGqrqRv~lA~al~~---------~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~--~~~h~~~~~  188 (212)
                      ..+|.||+|++.||.+|+.         +|+++|||||++ ||+..+..+++.|.....+  -++|+.+.+
T Consensus       274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~~~qv~it~~~~~~~  344 (365)
T TIGR00611       274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSLGVQVFVTAISLDHL  344 (365)
T ss_pred             HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhcCCEEEEEecChhhc
Confidence            3699999999999999999         999999999999 9999999999999764111  135776543

All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI

Probab=98.48  E-value=2.5e-07  Score=81.93  Aligned_cols=52  Identities=25%  Similarity=0.196  Sum_probs=45.8

Q ss_pred             CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeC
Q psy8250          10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV   63 (212)
Q Consensus        10 ~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~   63 (212)
                      +..+++ .+|.+.+|+.++|+|+||+|||||+++|++...| +.|.|.+.|...
T Consensus       127 Gi~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~-~~gvi~~iGer~  178 (418)
T TIGR03498       127 GVRVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDA-DVVVIALVGERG  178 (418)
T ss_pred             ccEEEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCCCC-CEEEEEEEeeec
Confidence            445665 6999999999999999999999999999999988 589998888754

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PRK03846 adenylylsulfate kinase; Provisional

Probab=98.47  E-value=1.1e-07  Score=76.23  Aligned_cols=57  Identities=25%  Similarity=0.371  Sum_probs=43.1

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCC
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHD   79 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~   79 (212)
                      .+|.+++|+|+||||||||.+.|.+.+.+...|.++++|.++... +...++|.+|+.
T Consensus        22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~-~~~~~~~~~~~~   78 (198)
T PRK03846         22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHG-LCSDLGFSDADR   78 (198)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhh-hhhcCCcCcccH
Confidence            678999999999999999999999977652356899999776421 112356776654

>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI

Probab=98.46  E-value=2.6e-07  Score=81.82  Aligned_cols=57  Identities=21%  Similarity=0.220  Sum_probs=47.0

Q ss_pred             cccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEe
Q psy8250           4 FHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLE   62 (212)
Q Consensus         4 l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~   62 (212)
                      ++..|. +..+++.+ |.+.+|++++|+|+||+|||||+++|++...+ +.+.+...|.+
T Consensus       117 ~~~~~~tGi~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~-~~~vi~~iGer  174 (411)
T TIGR03496       117 IDEPLDVGVRAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTEA-DVVVVGLIGER  174 (411)
T ss_pred             cceEeeeeEEeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCCC-CEEEEEEEecC
Confidence            344453 56788888 99999999999999999999999999999888 57776666654

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PRK02224 chromosome segregation protein; Provisional

Probab=98.46  E-value=1.7e-07  Score=90.42  Aligned_cols=64  Identities=20%  Similarity=0.167  Sum_probs=53.0

Q ss_pred             CCCCCChHHHH------HHHHHHHHhhC-----C-CeEEecCCCC-CChhhHHHHHHHHHHHHhhc------CcchHHHH
Q psy8250         128 VLNVLSGGERK------RVALAVQTIIV-----Q-SGFVPQHDLT-VDTLTVHEHMTLMARLKMDR------NLHHVERA  188 (212)
Q Consensus       128 ~~~~LSgGqrq------Rv~lA~al~~~-----p-~llilDEPt~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~  188 (212)
                      .+..||||||+      |+++|++++..     | +.+|+||||+ +|+.....+.++|..+....      .|||.+.+
T Consensus       778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~  857 (880)
T PRK02224        778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELV  857 (880)
T ss_pred             ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHH
Confidence            35789999999      89999999874     3 6799999999 99999999999999987431      37998877


Q ss_pred             HHH
Q psy8250         189 RTV  191 (212)
Q Consensus       189 ~~~  191 (212)
                      ..+
T Consensus       858 ~~a  860 (880)
T PRK02224        858 GAA  860 (880)
T ss_pred             Hhc
Confidence            543

>PLN02796 D-glycerate 3-kinase

Probab=98.45  E-value=5.1e-08  Score=83.96  Aligned_cols=54  Identities=19%  Similarity=0.328  Sum_probs=44.1

Q ss_pred             ceeeeeEEEE---cCCcE-----EEEECCCCccHHHHHHHHHcCCCCC--CceEEEECCEeCCc
Q psy8250          12 NYKESLSGIA---ESGSL-----LAIMGPSGAGKTTLLACISQRIQGD--VDGQILLNGLEVEK   65 (212)
Q Consensus        12 ~~l~~vs~~i---~~Ge~-----~~iiGpnGaGKSTLl~~i~g~~~p~--~~G~I~~~g~~~~~   65 (212)
                      .+++.+++.+   ++|+.     +||+|+||||||||++.|.+++.+.  ..|.|.++|..++.
T Consensus        80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~  143 (347)
T PLN02796         80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTA  143 (347)
T ss_pred             HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccch
Confidence            4677888776   56776     9999999999999999999998752  25888999887654

>PRK13898 type IV secretion system ATPase VirB4; Provisional

Probab=98.44  E-value=8.5e-06  Score=78.15  Aligned_cols=46  Identities=20%  Similarity=0.308  Sum_probs=38.1

Q ss_pred             eEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeC
Q psy8250          17 LSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV   63 (212)
Q Consensus        17 vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~   63 (212)
                      +||.+..+..++|+||+|||||||++.|++.... ..++|.+.+.+-
T Consensus       439 ~n~~~~~~~~~~i~G~tGsGKS~l~~~l~~~~~~-~~~~i~~~D~~~  484 (800)
T PRK13898        439 FNFHVRDVGHTLIIGPTGAGKTVLMNFLCAQAMK-FSPRMFFFDKDR  484 (800)
T ss_pred             EEEEEcCCCEEEEECCCCCcHHHHHHHHHhhccc-CCCeEEEeCCCc
Confidence            5677778889999999999999999999997776 477877765543

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=98.42  E-value=2.9e-07  Score=92.30  Aligned_cols=53  Identities=19%  Similarity=0.187  Sum_probs=46.0

Q ss_pred             CCCCCCCChHHHHHHH----HHHH--------HhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHh
Q psy8250         126 NSVLNVLSGGERKRVA----LAVQ--------TIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKM  178 (212)
Q Consensus       126 ~~~~~~LSgGqrqRv~----lA~a--------l~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~  178 (212)
                      ++.++.|||||||+++    +|++        +..+|++++|||||+ +|+.+...+++++.++..
T Consensus      1242 ~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l~~ 1307 (1353)
T TIGR02680      1242 THRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRALDL 1307 (1353)
T ss_pred             hccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHhCC
Confidence            4457899999999996    5645        558999999999999 999999999999999854

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PRK04863 mukB cell division protein MukB; Provisional

Probab=98.42  E-value=3.1e-07  Score=92.03  Aligned_cols=51  Identities=16%  Similarity=0.048  Sum_probs=43.4

Q ss_pred             CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEe
Q psy8250          10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLE   62 (212)
Q Consensus        10 ~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~   62 (212)
                      +...+.+..|++.+| +++|+|+|||||||+|++|++++.| ..|.+.|++.+
T Consensus        14 N~~~~~~~~~~f~~~-~~~l~G~NGaGKSTll~ai~~~l~~-~~~~~~f~~~~   64 (1486)
T PRK04863         14 NWNGFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALIP-DLTLLHFRNTT   64 (1486)
T ss_pred             cccCccceEEEecCC-eEEEECCCCCCHHHHHHHHHccccC-CCCeEEECCcc
Confidence            344566778999887 9999999999999999999999988 58889888653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	212
2d62_A	375	Crystal Structure Of Multiple Sugar Binding Transpo		6e-08
1g29_1	372	Malk Length = 372		6e-08
1yqt_A	538	Rnase-L Inhibitor Length = 538		1e-07
2pcj_A	224	Crystal Structure Of Abc Transporter (Aq_297) From		5e-07
3dhw_C	343	Crystal Structure Of Methionine Importer Metni Leng		8e-07
3tui_C	366	Inward Facing Conformations Of The Metni Methionine		9e-07
3bk7_A	607	Structure Of The Complete Abce1RNAASE-L Inhibitor P		9e-07
3j15_B	593	Model Of Ribosome-Bound Archaeal Pelota And Abce1 L		9e-07
3tuj_C	366	Inward Facing Conformations Of The Metni Methionine		1e-06
3c41_J	242	Abc Protein Artp In Complex With Amp-PnpMG2+ Length		2e-06
2olj_A	263	Abc Protein Artp In Complex With AdpMG2+ Length = 2		2e-06
2it1_A	362	Structure Of Ph0203 Protein From Pyrococcus Horikos		3e-06
3d31_A	348	Modbc From Methanosarcina Acetivorans Length = 348		5e-06
3tif_A	235	Dimeric Structure Of A Post-Hydrolysis State Of The		7e-06
1l2t_A	235	Dimeric Structure Of Mj0796, A Bacterial Abc Transp		8e-06
1v43_A	372	Crystal Structure Of Atpase Subunit Of Abc Sugar Tr		9e-06
1vci_A	373	Crystal Structure Of The Atp-binding Cassette Of Mu		9e-06
2onk_A	240	Abc Transporter Modbc In Complex With Its Binding P		9e-06
1z47_A	355	Structure Of The Atpase Subunit Cysa Of The Putativ		1e-05
1sgw_A	214	Putative Abc Transporter (Atp-Binding Protein) From		2e-05
1mv5_A	243	Crystal Structure Of Lmra Atp-Binding Domain Length		3e-05
4fi3_C	249	Structure Of Vitamin B12 Transporter Btucd-F In A N		8e-05
4dbl_C	249	Crystal Structure Of E159q Mutant Of Btucdf Length		8e-05
1f3o_A	235	Crystal Structure Of Mj0796 Atp-Binding Cassette Le		8e-05
2yyz_A	359	Crystal Structure Of Sugar Abc Transporter, Atp-Bin		9e-05
2d2e_A	250	Crystal Structure Of Atypical Cytoplasmic Abc-Atpas		9e-05
2qi9_C	249	Abc-Transporter Btucd In Complex With Its Periplasm		1e-04
1l7v_C	249	Bacterial Abc Transporter Involved In B12 Uptake Le		1e-04
2pjz_A	263	The Crystal Structure Of Putative Cobalt Transport		2e-04
4hlu_D	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		2e-04
1xef_A	241	Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI		2e-04
2ffa_A	247	Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr		2e-04
2ffb_A	247	The Crystal Structure Of The Hlyb-Nbd E631q Mutant		2e-04
3fvq_A	359	Crystal Structure Of The Nucleotide Binding Domain		2e-04
1mt0_A	241	Atp-Binding Domain Of Haemolysin B From Escherichia		3e-04
2ff7_A	247	The Abc-Atpase Of The Abc-Transporter Hlyb In The A		3e-04
2pmk_A	243	Crystal Structures Of An Isolated Abc-Atpase In Com		3e-04
2ghi_A	260	Crystal Structure Of Plasmodium Yoelii Multidrug Re		4e-04
1oxs_C	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		5e-04
3b5j_A	243	Crystal Structures Of The S504a Mutant Of An Isolat		7e-04
4ayw_A	619	Structure Of The Human Mitochondrial Abc Transporte		8e-04

>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 69/146 (47%), Gaps = 17/146 (11%)
Query: 8   FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL 67
           FGD    + LS   + G  L ++GPSG GKTT L  I+  ++    GQI      +E NL
Sbjct: 16  FGDVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAG-LEEPTRGQIY-----IEDNL 69
Query: 68  MVKVSG--FVPQHDLTV----DTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKE--- 118
           +       FVP  +  V     +  ++ H T+   +     L  V + + +D  ++E   
Sbjct: 70  VADPEKGVFVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPK-QEIDKRVREVAE 128
Query: 119 -LGLLKCKNSVLNVLSGGERKRVALA 143
            LGL +  N     LSGG+R+RVAL 
Sbjct: 129 XLGLTELLNRKPRELSGGQRQRVALG 154

>pdb|1G29|1 Chain 1, Malk Length = 372

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 19/148 (12%)
Query: 7   LFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG---LEV 63
           +FG+      +S   + G  + ++GPSG GKTT L  I+  ++    GQI +      + 
Sbjct: 12  VFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAG-LEEPSRGQIYIGDKLVADP 70
Query: 64  EKNLMVKVSGFVPQHD----LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKE- 118
           EK +      FVP  D    +   +  ++ HMT+   +     L  V R + +D  ++E 
Sbjct: 71  EKGI------FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPR-QEIDQRVREV 123
Query: 119 ---LGLLKCKNSVLNVLSGGERKRVALA 143
              LGL +  N     LSGG+R+RVAL 
Sbjct: 124 AELLGLTELLNRKPRELSGGQRQRVALG 151

>pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 65/129 (50%), Gaps = 24/129 (18%)
Query: 18  SGIAESGSLLAIMGPSGAGKTTL---LACISQRIQGDVDGQILLNGLEVEKNLMVKVSGF 74
            G  + G ++ I+GP+G GKTT    LA + +  +G           ++E +L V    +
Sbjct: 306 PGEIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEG-----------KIEWDLTV---AY 351
Query: 75  VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSG 134
            PQ+       TV+E ++ +   K++ N +  E       LLK LG++   +  +N LSG
Sbjct: 352 KPQYIKADYEGTVYELLSKIDASKLNSNFYKTE-------LLKPLGIIDLYDREVNELSG 404
Query: 135 GERKRVALA 143
           GE +RVA+A
Sbjct: 405 GELQRVAIA 413

>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/140 (35%), Positives = 74/140 (52%), Gaps = 16/140 (11%)
Query: 15  ESLSGIAES---GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV----EKNL 67
           E L GI+ S   G  ++I+G SG+GK+TLL  +   +    +G++ L G EV    EK L
Sbjct: 18  EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGL-LDAPTEGKVFLEGKEVDYTNEKEL 76
Query: 68  MV---KVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHV-ERARTVDALLKELGLLK 123
            +   +  GFV Q    +  LT  E++ ++  LKM +      ER    + LL ELGL  
Sbjct: 77  SLLRNRKLGFVFQFHYLIPELTALENV-IVPMLKMGKPKKEAKERG---EYLLSELGLGD 132
Query: 124 CKNSVLNVLSGGERKRVALA 143
             +     LSGGE++RVA+A
Sbjct: 133 KLSRKPYELSGGEQQRVAIA 152

>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343

Iteration: 1
 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 68/126 (53%), Gaps = 8/126 (6%)
Query: 23  SGSLLAIMGPSGAGKTTLLACIS---QRIQGD--VDGQILLNGLEVEKNLMVKVSGFVPQ 77
           +G +  ++G SGAGK+TL+ C++   +  +G   VDGQ L    E E     +  G + Q
Sbjct: 30  AGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQ 89
Query: 78  HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGER 137
           H   + + TV  ++ L   L++D N    E  R V  LL  +GL    +S  + LSGG++
Sbjct: 90  HFNLLSSRTVFGNVAL--PLELD-NTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQK 146
Query: 138 KRVALA 143
           +RVA+A
Sbjct: 147 QRVAIA 152

>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 68/126 (53%), Gaps = 8/126 (6%)
Query: 23  SGSLLAIMGPSGAGKTTLLACIS---QRIQGD--VDGQILLNGLEVEKNLMVKVSGFVPQ 77
           +G +  ++G SGAGK+TL+ C++   +  +G   VDGQ L    E E     +  G + Q
Sbjct: 53  AGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQ 112
Query: 78  HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGER 137
           H   + + TV  ++ L   L++D N    E  R V  LL  +GL    +S  + LSGG++
Sbjct: 113 HFNLLSSRTVFGNVAL--PLELD-NTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQK 169
Query: 138 KRVALA 143
           +RVA+A
Sbjct: 170 QRVAIA 175

>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 24/132 (18%)
Query: 15  ESLSGIAESGSLLAIMGPSGAGKTT---LLACISQRIQGDVDGQILLNGLEVEKNLMVKV 71
           E   G    G ++ I+GP+G GKTT   +LA + +  +G           +VE +L V  
Sbjct: 373 EVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEG-----------KVEWDLTV-- 419
Query: 72  SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV 131
             + PQ+       TV+E ++ +   K++ N +  E       LLK LG++   +  +  
Sbjct: 420 -AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTE-------LLKPLGIIDLYDRNVED 471
Query: 132 LSGGERKRVALA 143
           LSGGE +RVA+A
Sbjct: 472 LSGGELQRVAIA 483

>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 24/132 (18%)
Query: 15  ESLSGIAESGSLLAIMGPSGAGKTT---LLACISQRIQGDVDGQILLNGLEVEKNLMVKV 71
           E   G    G ++ I+GP+G GKTT   +LA + +  +G           +VE +L V  
Sbjct: 359 EVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEG-----------KVEWDLTV-- 405
Query: 72  SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV 131
             + PQ+       TV+E ++ +   K++ N +  E       LLK LG++   +  +  
Sbjct: 406 -AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTE-------LLKPLGIIDLYDRNVED 457
Query: 132 LSGGERKRVALA 143
           LSGGE +RVA+A
Sbjct: 458 LSGGELQRVAIA 469

>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 68/126 (53%), Gaps = 8/126 (6%)
Query: 23  SGSLLAIMGPSGAGKTTLLACIS---QRIQGD--VDGQILLNGLEVEKNLMVKVSGFVPQ 77
           +G +  ++G SGAGK+TL+ C++   +  +G   VDGQ L    E E     +  G + Q
Sbjct: 53  AGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGXIFQ 112
Query: 78  HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGER 137
           H   + + TV  ++ L   L++D N    E  R V  LL  +GL    +S  + LSGG++
Sbjct: 113 HFNLLSSRTVFGNVALP--LELD-NTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQK 169
Query: 138 KRVALA 143
           +RVA+A
Sbjct: 170 QRVAIA 175

>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 76/137 (55%), Gaps = 11/137 (8%)
Query: 15  ESLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-----N 66
           E L GI      G ++ ++GPSG+GK+T L C++     D +G+I+++G+ ++      N
Sbjct: 17  EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD-EGEIIIDGINLKAKDTNLN 75
Query: 67  LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKN 126
            + +  G V Q       +TV  ++TL A +K+ +       A+ ++ LL ++GL    +
Sbjct: 76  KVREEVGMVFQRFNLFPHMTVLNNITL-APMKVRKWPREKAEAKAME-LLDKVGLKDKAH 133
Query: 127 SVLNVLSGGERKRVALA 143
           +  + LSGG+ +RVA+A
Sbjct: 134 AYPDSLSGGQAQRVAIA 150

>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 76/137 (55%), Gaps = 11/137 (8%)
Query: 15  ESLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-----N 66
           E L GI      G ++ ++GPSG+GK+T L C++     D +G+I+++G+ ++      N
Sbjct: 38  EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD-EGEIIIDGINLKAKDTNLN 96
Query: 67  LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKN 126
            + +  G V Q       +TV  ++TL A +K+ +       A+ ++ LL ++GL    +
Sbjct: 97  KVREEVGMVFQRFNLFPHMTVLNNITL-APMKVRKWPREKAEAKAME-LLDKVGLKDKAH 154
Query: 127 SVLNVLSGGERKRVALA 143
           +  + LSGG+ +RVA+A
Sbjct: 155 AYPDSLSGGQAQRVAIA 171

>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 17/143 (11%)
Query: 8   FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL 67
           FG+     +++   + G  +A++GPSG+GK+TLL  I+  I     G+I  +  +V +  
Sbjct: 13  FGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAG-IYKPTSGKIYFDEKDVTE-- 69
Query: 68  MVKVSGFVPQHD----LTVDTLTVHEHMTLMARLKMDRNLHHVERA---RTVDALLKELG 120
                  +P  D    L      ++ HMT+   +     L    R    + V  + K L 
Sbjct: 70  -------LPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLH 122
Query: 121 LLKCKNSVLNVLSGGERKRVALA 143
           + K  N     LSGG+++RVA+A
Sbjct: 123 IDKLLNRYPWQLSGGQQQRVAIA 145

>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 12/132 (9%)
Query: 15  ESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGF 74
           ++LS   ESG    I+GP+GAGKT  L  I+     D  G+ILL+G +        V+  
Sbjct: 17  DNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD-SGRILLDGKD--------VTDL 67
Query: 75  VPQ-HDLTV--DTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV 131
            P+ HD+       ++  HM +   L+    +  ++  + V    ++L +    +     
Sbjct: 68  SPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLT 127
Query: 132 LSGGERKRVALA 143
           LSGGE++RVALA
Sbjct: 128 LSGGEQQRVALA 139

>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 7/129 (5%)
Query: 22  ESGSLLAIMGPSGAGKTTLL---ACISQRIQGDVD-GQILLNGLEVEKNLMVKVS--GFV 75
           + G  ++IMGPSG+GK+T+L    C+ +  +G+V    I  N L+ ++   ++    GFV
Sbjct: 29  KEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFV 88
Query: 76  PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGL-LKCKNSVLNVLSG 134
            Q    +  LT  E++ L    K    +   ER +     LK   L  +  N   N LSG
Sbjct: 89  FQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSG 148
Query: 135 GERKRVALA 143
           G+++RVA+A
Sbjct: 149 GQQQRVAIA 157

>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 7/129 (5%)
Query: 22  ESGSLLAIMGPSGAGKTTLL---ACISQRIQGDVD-GQILLNGLEVEKNLMVKVS--GFV 75
           + G  ++IMGPSG+GK+T+L    C+ +  +G+V    I  N L+ ++   ++    GFV
Sbjct: 29  KEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFV 88
Query: 76  PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGL-LKCKNSVLNVLSG 134
            Q    +  LT  E++ L    K    +   ER +     LK   L  +  N   N LSG
Sbjct: 89  FQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSG 148
Query: 135 GERKRVALA 143
           G+++RVA+A
Sbjct: 149 GQQQRVAIA 157

>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 18/158 (11%)
Query: 1   METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG 60
           +E     FG+      L+   + G  L ++GPSG GKTT L  I+  ++   +G+I    
Sbjct: 14  LENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG-LEEPTEGRIYFGD 72
Query: 61  LEV------EKNL-MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD 113
            +V      ++N+ MV  S  V  H      +TV+E++    ++K        +R R   
Sbjct: 73  RDVTYLPPKDRNISMVFQSYAVWPH------MTVYENIAFPLKIKKFPKDEIDKRVRWAA 126
Query: 114 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQS 151
            LL+   LL   N     LSGG+R+RVA+A + I+V+ 
Sbjct: 127 ELLQIEELL---NRYPAQLSGGQRQRVAVA-RAIVVEP 160

>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 18/158 (11%)
Query: 1   METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG 60
           +E     FG+      L+   + G  L ++GPSG GKTT L  I+  ++   +G+I    
Sbjct: 15  LENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG-LEEPTEGRIYFGD 73
Query: 61  LEV------EKNL-MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD 113
            +V      ++N+ MV  S  V  H      +TV+E++    ++K        +R R   
Sbjct: 74  RDVTYLPPKDRNISMVFQSYAVWPH------MTVYENIAFPLKIKKFPKDEIDKRVRWAA 127
Query: 114 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQS 151
            LL+   LL   N     LSGG+R+RVA+A + I+V+ 
Sbjct: 128 ELLQIEELL---NRYPAQLSGGQRQRVAVA-RAIVVEP 161

>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 68/124 (54%), Gaps = 8/124 (6%)
Query: 29  IMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS-GFVPQHDLTVDTLTV 87
           ++GP+GAGK+  L  I+  ++ D  G++ LNG ++      +   GFVPQ       L+V
Sbjct: 29  LLGPTGAGKSVFLELIAGIVKPD-RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSV 87
Query: 88  HEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTI 147
           + ++    R     N+  VER R V  + ++LG+    +     LSGGER+RVALA + +
Sbjct: 88  YRNIAYGLR-----NVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALA-RAL 141
Query: 148 IVQS 151
           ++Q 
Sbjct: 142 VIQP 145

>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 15/126 (11%)
Query: 24  GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQH---DL 80
           G ++ ++GPSG+GKTT+L  I+  ++    G + + G         +V+   PQ     L
Sbjct: 41  GEMVGLLGPSGSGKTTILRLIAG-LERPTKGDVWIGGK--------RVTDLPPQKRNVGL 91
Query: 81  TVDTLTVHEHMTLMARLKM---DRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGER 137
                 + +HMT+   +     ++ +   E    V  LL+ + L    N   + LSGG++
Sbjct: 92  VFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQ 151
Query: 138 KRVALA 143
           +RVALA
Sbjct: 152 QRVALA 157

>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 25/137 (18%)
Query: 15  ESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSG- 73
           E ++   E G+++   GP+G GKTTLL  IS  ++  + G+I+ NG+ +      KV G 
Sbjct: 26  ERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK-PLKGEIIYNGVPI-----TKVKGK 79
Query: 74  --FVPQHDLTVDTLTVHEHMTLMARL---KMDRN--LHHVERARTVDALLKELGLLKCKN 126
             F+P+  +    ++V +++  +A L   K+++N  +  +E    +D L K+LG      
Sbjct: 80  IFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD-LKKKLG------ 132
Query: 127 SVLNVLSGGERKRVALA 143
                LS G  +RV LA
Sbjct: 133 ----ELSQGTIRRVQLA 145

>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 69/136 (50%), Gaps = 22/136 (16%)
Query: 21  AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE----KNLMVKVSGFVP 76
           A+  S++A  GPSG GK+T+ + + +R      G+I ++G  ++    +N   ++ GFV 
Sbjct: 25  AQPNSIIAFAGPSGGGKSTIFSLL-ERFYQPTAGEITIDGQPIDNISLENWRSQI-GFVS 82
Query: 77  QHDLTVDTLTVHEHMTL-MARLKMDRNLHHV---ERARTV-----DALLKELGLLKCKNS 127
           Q D  +   T+ E++T  +     D +L  V     AR+      D L  E+G    K  
Sbjct: 83  Q-DSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVK-- 139
Query: 128 VLNVLSGGERKRVALA 143
               +SGG+R+R+A+A
Sbjct: 140 ----ISGGQRQRLAIA 151

>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 65/143 (45%), Gaps = 17/143 (11%)
Query: 17  LSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS---G 73
           LSG   +G +L ++GP+GAGK+TLLA ++    G   G I   G  +E     K++    
Sbjct: 19  LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG--KGSIQFAGQPLEAWSATKLALHRA 76
Query: 74  FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLS 133
           ++ Q         V  ++TL        + H   R   ++ +   L L        N LS
Sbjct: 77  YLSQQQTPPFATPVWHYLTL--------HQHDKTRTELLNDVAGALALDDKLGRSTNQLS 128
Query: 134 GGERKRVALAVQTIIVQSGFVPQ 156
           GGE +RV LA   +++Q    PQ
Sbjct: 129 GGEWQRVRLAA--VVLQ--ITPQ 147

>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 65/143 (45%), Gaps = 17/143 (11%)
Query: 17  LSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS---G 73
           LSG   +G +L ++GP+GAGK+TLLA ++    G   G I   G  +E     K++    
Sbjct: 19  LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG--KGSIQFAGQPLEAWSATKLALHRA 76
Query: 74  FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLS 133
           ++ Q         V  ++TL        + H   R   ++ +   L L        N LS
Sbjct: 77  YLSQQQTPPFATPVWHYLTL--------HQHDKTRTELLNDVAGALALDDKLGRSTNQLS 128
Query: 134 GGERKRVALAVQTIIVQSGFVPQ 156
           GGE +RV LA   +++Q    PQ
Sbjct: 129 GGEWQRVRLAA--VVLQ--ITPQ 147

>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 64/129 (49%), Gaps = 7/129 (5%)
Query: 22  ESGSLLAIMGPSGAGKTT---LLACISQRIQGDVD-GQILLNGLEVEKNLMVKVS--GFV 75
           + G  ++I GPSG+GK+T   ++ C+ +  +G+V    I  N L+ ++   ++    GFV
Sbjct: 29  KEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFV 88
Query: 76  PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGL-LKCKNSVLNVLSG 134
            Q    +  LT  E++ L    K        ER +     LK   L  +  N   N LSG
Sbjct: 89  FQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAELEERFANHKPNQLSG 148
Query: 135 GERKRVALA 143
           G+++RVA+A
Sbjct: 149 GQQQRVAIA 157

>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 11/140 (7%)
Query: 8   FGDTNYKESLSGIAESGSLLAIMGPSGAGKTT---LLACISQRIQGDVD-GQILLNGLEV 63
           FG     + +S   + G  +A++GPSG GKTT   +LA I +   G++    +L+N +  
Sbjct: 13  FGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPP 72
Query: 64  EKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK 123
           +     +  G V Q+      +TV E++    R    R +   E  + V  + ++L +  
Sbjct: 73  K----YREVGMVFQNYALYPHMTVFENIAFPLRA---RRISKDEVEKRVVEIARKLLIDN 125
Query: 124 CKNSVLNVLSGGERKRVALA 143
             +     LSGG+++RVALA
Sbjct: 126 LLDRKPTQLSGGQQQRVALA 145

>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 65/130 (50%), Gaps = 13/130 (10%)
Query: 20  IAESGSLLAIMGPSGAGKTTLLACISQRIQGDVD-GQILLNG---LEVEKNLMVKVSGFV 75
           +   G + A+MGP+GAGK+TL   ++   +  V+ G+ILL+G   LE+  +   +   F+
Sbjct: 25  VVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFL 84
Query: 76  P-QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLN---- 130
             Q+ + V  +T+   + L  + K+ R +   E    V    K L LL    S L+    
Sbjct: 85  AFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVK---KALELLDWDESYLSRYLN 141
Query: 131 -VLSGGERKR 139
              SGGE+KR
Sbjct: 142 EGFSGGEKKR 151

>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 64/143 (44%), Gaps = 17/143 (11%)
Query: 17  LSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS---G 73
           LSG   +G +L ++GP+GAGK+TLLA  +    G   G I   G  +E     K++    
Sbjct: 19  LSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG--KGSIQFAGQPLEAWSATKLALHRA 76
Query: 74  FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLS 133
           ++ Q         V  ++TL        + H   R   ++ +   L L        N LS
Sbjct: 77  YLSQQQTPPFATPVWHYLTL--------HQHDKTRTELLNDVAGALALDDKLGRSTNQLS 128
Query: 134 GGERKRVALAVQTIIVQSGFVPQ 156
           GGE +RV LA   +++Q    PQ
Sbjct: 129 GGEWQRVRLAA--VVLQ--ITPQ 147

>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 64/143 (44%), Gaps = 17/143 (11%)
Query: 17  LSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS---G 73
           LSG   +G +L ++GP+GAGK+TLLA  +    G   G I   G  +E     K++    
Sbjct: 19  LSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG--KGSIQFAGQPLEAWSATKLALHRA 76
Query: 74  FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLS 133
           ++ Q         V  ++TL        + H   R   ++ +   L L        N LS
Sbjct: 77  YLSQQQTPPFATPVWHYLTL--------HQHDKTRTELLNDVAGALALDDKLGRSTNQLS 128
Query: 134 GGERKRVALAVQTIIVQSGFVPQ 156
           GGE +RV LA   +++Q    PQ
Sbjct: 129 GGEWQRVRLAA--VVLQ--ITPQ 147

>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 8/85 (9%)
Query: 23  SGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-NLMVKVSGFVPQ-HDL 80
           +G  + I+GP+G+GKTTLL  IS  +     G I +NG+EV K    ++ S  +P+ +++
Sbjct: 29  NGEKVIILGPNGSGKTTLLRAISGLLP--YSGNIFINGMEVRKIRNYIRYSTNLPEAYEI 86
Query: 81  TVDTLTVHEHMTLMARLK-MDRNLH 104
            V   TV++ + L   LK +DR+L 
Sbjct: 87  GV---TVNDIVYLYEELKGLDRDLF 108

>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 64/123 (52%), Gaps = 6/123 (4%)
Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLT 81
           E+G +  ++G +G+GKTTLL  ++  +     G+I L+G   +  L+ K  G+V Q+  +
Sbjct: 35  ETGKIYVVVGKNGSGKTTLLKILAGLLA--AAGEIFLDGSPADPFLLRKNVGYVFQNPSS 92
Query: 82  -VDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRV 140
            +   TV E +     +     L   E  + +  +L+ +GL     +    LSGG+++R+
Sbjct: 93  QIIGATVEEDVAFSLEI---MGLDESEMRKRIKKVLELVGLSGLAAADPLNLSGGQKQRL 149
Query: 141 ALA 143
           A+A
Sbjct: 150 AIA 152

>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 90/188 (47%), Gaps = 19/188 (10%)
Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV---EKNLMVKVSGFVPQH 78
           + G ++ I+G SG+GK+TL   I QR     +GQ+L++G ++   + N + +  G V Q 
Sbjct: 27  KQGEVIGIVGRSGSGKSTLTKLI-QRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQD 85
Query: 79  DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV----LSG 134
           ++ ++   +         + +++ ++  + A   D + +   L +  N+++      LSG
Sbjct: 86  NVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE---LREGYNTIVGEQGAGLSG 142
Query: 135 GERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDAL 194
           G+R+R+A+A    +V +  +   D     L       +M      RN+H + + RTV  +
Sbjct: 143 GQRQRIAIA--RALVNNPKILIFDEATSALDYESEHVIM------RNMHKICKGRTVIII 194
Query: 195 LKELGLLK 202
              L  +K
Sbjct: 195 AARLSTVK 202

>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 90/188 (47%), Gaps = 19/188 (10%)
Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV---EKNLMVKVSGFVPQH 78
           + G ++ I+G SG+GK+TL   I QR     +GQ+L++G ++   + N + +  G V Q 
Sbjct: 33  KQGEVIGIVGRSGSGKSTLTKLI-QRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQD 91
Query: 79  DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV----LSG 134
           ++ ++   +         + +++ ++  + A   D + +   L +  N+++      LSG
Sbjct: 92  NVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE---LREGYNTIVGEQGAGLSG 148
Query: 135 GERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDAL 194
           G+R+R+A+A    +V +  +   D     L       +M      RN+H + + RTV  +
Sbjct: 149 GQRQRIAIA--RALVNNPKILIFDEATSALDYESEHVIM------RNMHKICKGRTVIII 200
Query: 195 LKELGLLK 202
              L  +K
Sbjct: 201 AARLSTVK 208

>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 90/188 (47%), Gaps = 19/188 (10%)
Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV---EKNLMVKVSGFVPQH 78
           + G ++ I+G SG+GK+TL   I QR     +GQ+L++G ++   + N + +  G V Q 
Sbjct: 33  KQGEVIGIVGRSGSGKSTLTKLI-QRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQD 91
Query: 79  DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV----LSG 134
           ++ ++   +         + +++ ++  + A   D + +   L +  N+++      LSG
Sbjct: 92  NVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE---LREGYNTIVGEQGAGLSG 148
Query: 135 GERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDAL 194
           G+R+R+A+A    +V +  +   D     L       +M      RN+H + + RTV  +
Sbjct: 149 GQRQRIAIA--RALVNNPKILIFDQATSALDYESEHVIM------RNMHKICKGRTVIII 200
Query: 195 LKELGLLK 202
              L  +K
Sbjct: 201 AHRLSTVK 208

>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 9/133 (6%)
Query: 8   FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV-EKN 66
           F +T     +S   + G +L I+G SG GKTTLL C++   Q D  G+I L+G  +  KN
Sbjct: 14  FQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD-SGEISLSGKTIFSKN 72
Query: 67  LMVKVS----GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL 122
             + V     G++ Q  +    LTV+ ++     L   +     ER R ++A+L+  G+ 
Sbjct: 73  TNLPVRERRLGYLVQEGVLFPHLTVYRNIAYG--LGNGKGRTAQERQR-IEAMLELTGIS 129
Query: 123 KCKNSVLNVLSGG 135
           +      + LSGG
Sbjct: 130 ELAGRYPHELSGG 142

>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 90/188 (47%), Gaps = 19/188 (10%)
Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV---EKNLMVKVSGFVPQH 78
           + G ++ I+G SG+GK+TL   I QR     +GQ+L++G ++   + N + +  G V Q 
Sbjct: 27  KQGEVIGIVGRSGSGKSTLTKLI-QRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQD 85
Query: 79  DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV----LSG 134
           ++ ++   +         + +++ ++  + A   D + +   L +  N+++      LSG
Sbjct: 86  NVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE---LREGYNTIVGEQGAGLSG 142
Query: 135 GERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDAL 194
           G+R+R+A+A    +V +  +   D     L       +M      RN+H + + RTV  +
Sbjct: 143 GQRQRIAIA--RALVNNPKILIFDEATSALDYESEHVIM------RNMHKICKGRTVIII 194
Query: 195 LKELGLLK 202
              L  +K
Sbjct: 195 AHRLSTVK 202

>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 90/188 (47%), Gaps = 19/188 (10%)
Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV---EKNLMVKVSGFVPQH 78
           + G ++ I+G SG+GK+TL   I QR     +GQ+L++G ++   + N + +  G V Q 
Sbjct: 33  KQGEVIGIVGRSGSGKSTLTKLI-QRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQD 91
Query: 79  DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV----LSG 134
           ++ ++   +         + +++ ++  + A   D + +   L +  N+++      LSG
Sbjct: 92  NVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE---LREGYNTIVGEQGAGLSG 148
Query: 135 GERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDAL 194
           G+R+R+A+A    +V +  +   D     L       +M      RN+H + + RTV  +
Sbjct: 149 GQRQRIAIA--RALVNNPKILIFDEATSALDYESEHVIM------RNMHKICKGRTVIII 200
Query: 195 LKELGLLK 202
              L  +K
Sbjct: 201 AHRLSTVK 208

>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 90/188 (47%), Gaps = 19/188 (10%)
Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV---EKNLMVKVSGFVPQH 78
           + G ++ I+G SG+GK+TL   I QR     +GQ+L++G ++   + N + +  G V Q 
Sbjct: 29  KQGEVIGIVGRSGSGKSTLTKLI-QRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQD 87
Query: 79  DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV----LSG 134
           ++ ++   +         + +++ ++  + A   D + +   L +  N+++      LSG
Sbjct: 88  NVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE---LREGYNTIVGEQGAGLSG 144
Query: 135 GERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDAL 194
           G+R+R+A+A    +V +  +   D     L       +M      RN+H + + RTV  +
Sbjct: 145 GQRQRIAIA--RALVNNPKILIFDEATSALDYESEHVIM------RNMHKICKGRTVIII 196
Query: 195 LKELGLLK 202
              L  +K
Sbjct: 197 AHRLSTVK 204

>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 75/156 (48%), Gaps = 28/156 (17%)
Query: 8   FGDTNYK----------ESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQIL 57
           F D N+           +S++    SG+  A++G +G+GK+T+   + +    D +G I 
Sbjct: 20  FSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFY--DAEGDIK 77
Query: 58  LNGLEVEK---NLMVKVSGFVPQHDLTVDTLTVHEHMTL-MARLKMDRNLHHVERARTVD 113
           + G  V K   N +  + G VPQ     DT+  +E +   +   K+D     V +A T  
Sbjct: 78  IGGKNVNKYNRNSIRSIIGIVPQ-----DTILFNETIKYNILYGKLDATDEEVIKA-TKS 131
Query: 114 ALLKEL--GLLKCKNSVLN----VLSGGERKRVALA 143
           A L +    L K  ++++      LSGGER+R+A+A
Sbjct: 132 AQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIA 167

>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 60/129 (46%), Gaps = 12/129 (9%)
Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS------GFV 75
           E+G    I+GPSGAGKTT +  I+  +     G++  +   V  N  + V       G V
Sbjct: 29  ENGERFGILGPSGAGKTTFMRIIAG-LDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMV 87
Query: 76  PQHDLTVDTLTVHEHMTL-MARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSG 134
            Q       LT  E++   +  +KM +     E  + V+ + K L +    N     LSG
Sbjct: 88  FQTWALYPNLTAFENIAFPLTNMKMSKE----EIRKRVEEVAKILDIHHVLNHFPRELSG 143
Query: 135 GERKRVALA 143
           G+++RVALA
Sbjct: 144 GQQQRVALA 152

>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 90/188 (47%), Gaps = 19/188 (10%)
Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV---EKNLMVKVSGFVPQH 78
           + G ++ I+G +G+GK+TL   I QR     +GQ+L++G ++   + N + +  G V Q 
Sbjct: 29  KQGEVIGIVGRAGSGKSTLTKLI-QRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQD 87
Query: 79  DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV----LSG 134
           ++ ++   +         + +++ ++  + A   D + +   L +  N+++      LSG
Sbjct: 88  NVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE---LREGYNTIVGEQGAGLSG 144
Query: 135 GERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDAL 194
           G+R+R+A+A    +V +  +   D     L       +M      RN+H + + RTV  +
Sbjct: 145 GQRQRIAIA--RALVNNPKILIFDEATSALDYESEHVIM------RNMHKICKGRTVIII 196
Query: 195 LKELGLLK 202
              L  +K
Sbjct: 197 AHRLSTVK 204

>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 76/147 (51%), Gaps = 18/147 (12%)
Query: 6   PLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK 65
           P+F D     SLS    SGS+ A++GPSG+GK+T+L+ +  R+     G I L+G ++ +
Sbjct: 389 PIFQDF----SLS--IPSGSVTALVGPSGSGKSTVLSLL-LRLYDPASGTISLDGHDIRQ 441
Query: 66  ----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER-ARTVDALLKELG 120
                L  K+ G V Q  +   + ++ E++   A          ++R A   +A+     
Sbjct: 442 LNPVWLRSKI-GTVSQEPILF-SCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRN 499
Query: 121 LLKCKNSVLN----VLSGGERKRVALA 143
             +  N+V+     +LSGG+++R+A+A
Sbjct: 500 FPQGFNTVVGEKGVLLSGGQKQRIAIA 526

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	212
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	1e-15
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	2e-13
1sgw_A	214	Putative ABC transporter; structural genomics, P p	2e-15
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	2e-14
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	3e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-14
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	2e-13
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	1e-12
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	6e-11
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	1e-12
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	2e-11
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	2e-12
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	3e-12
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	9e-12
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	1e-11
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	6e-11
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	2e-10
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	6e-09
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	1e-08
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	4e-08
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	7e-08
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	1e-07
1b0u_A	262	Histidine permease; ABC transporter, transport pro	1e-07
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	2e-07
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	2e-07
1g6h_A	257	High-affinity branched-chain amino acid transport	1e-06
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	1e-06
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	2e-05
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	2e-05
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	3e-05
1ji0_A	240	ABC transporter; ATP binding protein, structural g	3e-05
2ghi_A	260	Transport protein; multidrug resistance protein, M	7e-05
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	2e-04
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	4e-04
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	5e-04
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	5e-04
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	5e-04

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 73.9 bits (182), Expect = 1e-15
 Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 18/130 (13%)

Query: 15  ESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGF 74
           E   G    G ++ I+GP+G GKTT +  ++   +   +G++  +           V+ +
Sbjct: 373 EVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT-EGKVEWDL---------TVA-Y 421

Query: 75  VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSG 134
            PQ+       TV+E ++ +   K++ N            LLK LG++   +  +  LSG
Sbjct: 422 KPQYIKAEYEGTVYELLSKIDSSKLNSN-------FYKTELLKPLGIIDLYDRNVEDLSG 474

Query: 135 GERKRVALAV 144
           GE +RVA+A 
Sbjct: 475 GELQRVAIAA 484

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 67.3 bits (165), Expect = 2e-13
 Identities = 30/147 (20%), Positives = 59/147 (40%), Gaps = 18/147 (12%)

Query: 8   FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ-----GDVDGQILLNGLE 62
           +G   +      I + G ++ I+GP+G GKTT +  ++ ++       +     ++    
Sbjct: 101 YGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFR 160

Query: 63  ------VEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALL 116
                   + L       V +           + +    + K+   L  V+     + ++
Sbjct: 161 GNELQNYFERLKNGEIRPVVKPQYV-------DLLPKAVKGKVRELLKKVDEVGKFEEVV 213

Query: 117 KELGLLKCKNSVLNVLSGGERKRVALA 143
           KEL L    +  L+ LSGGE +RVA+A
Sbjct: 214 KELELENVLDRELHQLSGGELQRVAIA 240

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214

 Score = 71.0 bits (175), Expect = 2e-15
 Identities = 34/127 (26%), Positives = 63/127 (49%), Gaps = 10/127 (7%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLT 81
           E G+++   GP+G GKTTLL  IS  ++    G+I+ NG+ + K        F+P+  + 
Sbjct: 33  EKGNVVNFHGPNGIGKTTLLKTISTYLKPL-KGEIIYNGVPITKVK--GKIFFLPEEIIV 89

Query: 82  VDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVA 141
              ++V +++  +A L     +   +    +   L+ + +L  K  +   LS G  +RV 
Sbjct: 90  PRKISVEDYLKAVASLY---GVKVNKNE--IMDALESVEVLDLKKKLGE-LSQGTIRRVQ 143

Query: 142 LAVQTII 148
           LA  T++
Sbjct: 144 LA-STLL 149

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253

 Score = 68.7 bits (169), Expect = 2e-14
 Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 16/125 (12%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLT 81
             G +LA++G +G GK+TLL  +   I   + G+I     EV +++     GFVPQ   +
Sbjct: 29  NKGDILAVLGQNGCGKSTLLDLLL-GIHRPIQGKI-----EVYQSI-----GFVPQFFSS 77

Query: 82  VDTLTVHEHMTLMAR---LKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERK 138
               +V + + LM R   +         +        L  L L          LSGG+R+
Sbjct: 78  PFAYSVLD-IVLMGRSTHINTFAKPKSHDYQV-AMQALDYLNLTHLAKREFTSLSGGQRQ 135

Query: 139 RVALA 143
            + +A
Sbjct: 136 LILIA 140

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256

 Score = 68.3 bits (168), Expect = 3e-14
 Identities = 30/138 (21%), Positives = 57/138 (41%), Gaps = 6/138 (4%)

Query: 8   FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN- 66
            G     + +S   E G +  ++GP+GAGKTT L  IS  I+    G + + G  V +  
Sbjct: 25  IGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS-SGIVTVFGKNVVEEP 83

Query: 67  LMVKVS-GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCK 125
             V+    ++P+       +   E++  +A           E    V+   +  GL +  
Sbjct: 84  HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGF---YASSSSEIEEMVERATEIAGLGEKI 140

Query: 126 NSVLNVLSGGERKRVALA 143
              ++  S G  +++ +A
Sbjct: 141 KDRVSTYSKGMVRKLLIA 158

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 69.1 bits (168), Expect = 7e-14
 Identities = 45/228 (19%), Positives = 84/228 (36%), Gaps = 55/228 (24%)

Query: 14  KESLSGIAESGSLLAIMGPSGAGKTTL--LACISQRIQGDVDGQIL-LN-G--------L 61
           +++L  +      + I G  G+GKT +    C+S ++Q  +D +I  LN          L
Sbjct: 141 RQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199

Query: 62  EVEKNLMVKVSG-FVPQHDLTVDT-LTVHEHMTLMARLKMDRN-------LHHVERARTV 112
           E+ + L+ ++   +  + D + +  L +H     + RL   +        L +V+ A+  
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259

Query: 113 DALLKELGLLKCK-------NSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLTVDTLT 165
           +A       L CK         V + LS      ++L               D    TLT
Sbjct: 260 NAF-----NLSCKILLTTRFKQVTDFLSAATTTHISL---------------DHHSMTLT 299

Query: 166 VHEHMTLMAR-LKMD-RNLHHVERARTVDALLKELGLLKCRPADELNR 211
             E  +L+ + L    ++L       T +     L ++     D L  
Sbjct: 300 PDEVKSLLLKYLDCRPQDLP--REVLTTNPRR--LSIIAESIRDGLAT 343

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249

 Score = 65.7 bits (161), Expect = 2e-13
 Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 13/132 (9%)

Query: 15  ESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKV 71
             LSG   +G +L ++GP+GAGK+TLLA ++    G   G I   G  +E      +   
Sbjct: 17  GPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG--KGSIQFAGQPLEAWSATKLALH 74

Query: 72  SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV 131
             ++ Q         V  +      L + ++         ++ +   L L        N 
Sbjct: 75  RAYLSQQQTPPFATPVWHY------LTLHQHDKTRTEL--LNDVAGALALDDKLGRSTNQ 126

Query: 132 LSGGERKRVALA 143
           LSGGE +RV LA
Sbjct: 127 LSGGEWQRVRLA 138

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 65.4 bits (160), Expect = 1e-12
 Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 18/130 (13%)

Query: 15  ESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGF 74
           E   G  + G ++ I+GP+G GKTT +  ++   +   +G+I  +           V+ +
Sbjct: 303 EVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT-EGKIEWDL---------TVA-Y 351

Query: 75  VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSG 134
            PQ+       TV+E       L    +   +        LLK LG++   +  +N LSG
Sbjct: 352 KPQYIKADYEGTVYE-------LLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSG 404

Query: 135 GERKRVALAV 144
           GE +RVA+A 
Sbjct: 405 GELQRVAIAA 414

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 60.0 bits (146), Expect = 6e-11
 Identities = 26/151 (17%), Positives = 56/151 (37%), Gaps = 26/151 (17%)

Query: 8   FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ-----GDVDGQILLNGLE 62
           +G   +      + + G ++ I+GP+G GK+T +  ++ ++       +     ++    
Sbjct: 31  YGVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFR 90

Query: 63  VE--KNLMVKVSG----FVPQHDLTVDTLTVHEHMT----LMARLKMDRNLHHVERARTV 112
               +N   K+       V +                      + K+   L   +    +
Sbjct: 91  GNELQNYFEKLKNGEIRPVVK-----------PQYVDLIPKAVKGKVIELLKKADETGKL 139

Query: 113 DALLKELGLLKCKNSVLNVLSGGERKRVALA 143
           + ++K L L       +  LSGGE +RVA+A
Sbjct: 140 EEVVKALELENVLEREIQHLSGGELQRVAIA 170

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 65.1 bits (159), Expect = 1e-12
 Identities = 30/126 (23%), Positives = 50/126 (39%), Gaps = 18/126 (14%)

Query: 18  SGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQ 77
            G      +L +MG +G GKTTL+  ++  ++ D +GQ +             VS   PQ
Sbjct: 372 EGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD-EGQDIPKL---------NVS-MKPQ 420

Query: 78  HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGER 137
                   TV +       L   +        +    ++K L +    +  +  LSGGE 
Sbjct: 421 KIAPKFPGTVRQ-------LFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGEL 473

Query: 138 KRVALA 143
           +RVA+ 
Sbjct: 474 QRVAIV 479

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 61.2 bits (149), Expect = 2e-11
 Identities = 28/151 (18%), Positives = 53/151 (35%), Gaps = 19/151 (12%)

Query: 8   FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQ-------RIQGDVDGQILLNG 60
           +   ++K         G +L ++G +G GK+T L  ++        R     + Q ++  
Sbjct: 87  YSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKY 146

Query: 61  LEVEK--NLMVKV------SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 112
               +  N   K+      +   PQ+   +          +   LK+       +    V
Sbjct: 147 FRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRME----KSPEDV 202

Query: 113 DALLKELGLLKCKNSVLNVLSGGERKRVALA 143
              +K L L       +  LSGGE +R A+ 
Sbjct: 203 KRYIKILQLENVLKRDIEKLSGGELQRFAIG 233

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 64.3 bits (157), Expect = 2e-12
 Identities = 30/127 (23%), Positives = 55/127 (43%), Gaps = 16/127 (12%)

Query: 18  SGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQ 77
           +G A+ G ++ I+GP+G GKTT    +   I  D +G +      +          + PQ
Sbjct: 288 NGEAKEGEIIGILGPNGIGKTTFARILVGEITAD-EGSVTPEKQIL---------SYKPQ 337

Query: 78  HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGER 137
                   TV +++   ++  +  +    E       + K L L +   S +N LSGGE 
Sbjct: 338 RIFPNYDGTVQQYLENASKDALSTSSWFFEE------VTKRLNLHRLLESNVNDLSGGEL 391

Query: 138 KRVALAV 144
           +++ +A 
Sbjct: 392 QKLYIAA 398

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 63.9 bits (156), Expect = 3e-12
 Identities = 29/132 (21%), Positives = 60/132 (45%), Gaps = 10/132 (7%)

Query: 20  IAESGSLLAIMGPSGAGKTTLLACISQRIQ---GDVDGQILLNGLEVEKNLMVKVSGFVP 76
             ++ ++L ++G +G GKTT+L  ++  I    GD + ++  +  EV K    K      
Sbjct: 21  TPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKD--EVLKRFRGKEIYNYF 78

Query: 77  QHDLTVDTLTVH-----EHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV 131
           +   + +   VH     E+ +   +  ++  L  ++     D + + L +    N   N+
Sbjct: 79  KELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANI 138

Query: 132 LSGGERKRVALA 143
           LSGG  +R+ +A
Sbjct: 139 LSGGGLQRLLVA 150

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263

 Score = 61.6 bits (150), Expect = 9e-12
 Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 13/122 (10%)

Query: 24  GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-NLMVKVSGFVPQHDLTV 82
           G  + I+GP+G+GKTTLL  IS  +     G I +NG+EV K    ++ S  +P+     
Sbjct: 30  GEKVIILGPNGSGKTTLLRAISGLL--PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEI- 86

Query: 83  DTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVA 141
                   +T+   + +   L  ++R      +LK L L  +     L  LS G+   V 
Sbjct: 87  -------GVTVNDIVYLYEELKGLDRDL-FLEMLKALKLGEEILRRKLYKLSAGQSVLVR 138

Query: 142 LA 143
            +
Sbjct: 139 TS 140

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279

 Score = 61.5 bits (150), Expect = 1e-11
 Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 19/135 (14%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRI---QGDVD------GQILLNGLEVEKNLMVKVS 72
             G    + G +GAGKTTLL  ++       G V+      G++  +   V +++     
Sbjct: 45  AKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHI----- 99

Query: 73  GFVPQ--HDLTVDTLTVHE--HMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSV 128
           GFV     +   +   V +         + + +++    R      LLK +G+       
Sbjct: 100 GFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNE-AHQLLKLVGMSAKAQQY 158

Query: 129 LNVLSGGERKRVALA 143
           +  LS GE++RV +A
Sbjct: 159 IGYLSTGEKQRVMIA 173

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224

 Score = 58.7 bits (143), Expect = 6e-11
 Identities = 49/148 (33%), Positives = 73/148 (49%), Gaps = 32/148 (21%)

Query: 15  ESLSGIA---ESGSLLAIMGPSGAGKTTLLACISQRIQGDVD----GQILLNGLEVEK-- 65
           E L GI+   + G  ++I+G SG+GK+TLL      I G +D    G++ L G EV+   
Sbjct: 18  EILKGISLSVKKGEFVSIIGASGSGKSTLL-----YILGLLDAPTEGKVFLEGKEVDYTN 72

Query: 66  --------NLMVKVSGFVPQ-HDLTVDTLTVHEHMTL-MARLKMDRNLHHVERARTVDAL 115
                   N  +   GFV Q H L +  LT  E++ + M ++   +     E     + L
Sbjct: 73  EKELSLLRNRKL---GFVFQFHYL-IPELTALENVIVPMLKMGKPKK----EAKERGEYL 124

Query: 116 LKELGLLKCKNSVLNVLSGGERKRVALA 143
           L ELGL    +     LSGGE++RVA+A
Sbjct: 125 LSELGLGDKLSRKPYELSGGEQQRVAIA 152

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235

 Score = 57.6 bits (140), Expect = 2e-10
 Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 19/135 (14%)

Query: 22  ESGSLLAIMGPSGAGKTTL---LACISQRIQGDV--DGQILLNGLEVEK-------NLMV 69
           + G  ++IMGPSG+GK+T+   + C+      D   +G++ ++ ++           +  
Sbjct: 29  KEGEFVSIMGPSGSGKSTMLNIIGCL------DKPTEGEVYIDNIKTNDLDDDELTKIRR 82

Query: 70  KVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSV 128
              GFV Q    +  LT  E++ L    K    +   ER +     LK   L  +  N  
Sbjct: 83  DKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHK 142

Query: 129 LNVLSGGERKRVALA 143
            N LSGG+++RVA+A
Sbjct: 143 PNQLSGGQQQRVAIA 157

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240

 Score = 53.3 bits (129), Expect = 6e-09
 Identities = 38/148 (25%), Positives = 63/148 (42%), Gaps = 32/148 (21%)

Query: 8   FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL 67
            G+                  ++GP+GAGK+  L  I+  ++ D  G++ LNG ++    
Sbjct: 11  LGNFRLNVDFE---MGRDYCVLLGPTGAGKSVFLELIAGIVKPD-RGEVRLNGADITP-- 64

Query: 68  MVKVSGFVPQHDLTVDT----------LTVHEHMT--LMARLKMDRNLHHVERARTVDAL 115
                  +P     +            L+V+ ++   L       RN+  VER R V  +
Sbjct: 65  -------LPPERRGIGFVPQDYALFPHLSVYRNIAYGL-------RNVERVERDRRVREM 110

Query: 116 LKELGLLKCKNSVLNVLSGGERKRVALA 143
            ++LG+    +     LSGGER+RVALA
Sbjct: 111 AEKLGIAHLLDRKPARLSGGERQRVALA 138

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355

 Score = 53.0 bits (128), Expect = 1e-08
 Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 23/132 (17%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV------EKNLMVKVSGFV 75
             G ++ ++GPSG+GKTT+L  I+   +    G + + G  V      ++N+     G V
Sbjct: 39  REGEMVGLLGPSGSGKTTILRLIAGLERPT-KGDVWIGGKRVTDLPPQKRNV-----GLV 92

Query: 76  PQHDLTVDTLTVHEHMTLMAR----LKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV 131
            Q+        + +HMT+       L+  + +   E    V  LL+ + L    N   + 
Sbjct: 93  FQN------YALFQHMTVYDNVSFGLRE-KRVPKDEMDARVRELLRFMRLESYANRFPHE 145

Query: 132 LSGGERKRVALA 143
           LSGG+++RVALA
Sbjct: 146 LSGGQQQRVALA 157

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348

 Score = 51.4 bits (124), Expect = 4e-08
 Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 28/133 (21%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLT 81
           ESG    I+GP+GAGKT  L  I+     D  G+ILL+G +V           +      
Sbjct: 24  ESGEYFVILGPTGAGKTLFLELIAGFHVPD-SGRILLDGKDVTD---------LSPEKHD 73

Query: 82  VDT----------LTVHEHMTLMA-RLKMDRNLHHVERARTVDALLKELGLLKCKNSVLN 130
           +            + V ++   +   ++M +    ++  + V    ++L +    +    
Sbjct: 74  IAFVYQNYSLFPHMNVKKN---LEFGMRMKK----IKDPKRVLDTARDLKIEHLLDRNPL 126

Query: 131 VLSGGERKRVALA 143
            LSGGE++RVALA
Sbjct: 127 TLSGGEQQRVALA 139

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 51.2 bits (122), Expect = 7e-08
 Identities = 28/137 (20%), Positives = 45/137 (32%), Gaps = 22/137 (16%)

Query: 8   FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL 67
           +G            +      I GP+G GK+TL+  I+    G VDG             
Sbjct: 445 YGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIA---NGQVDGFPTQEECRT---- 497

Query: 68  MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCK-N 126
                 +V       D    H   +++  +        V     +   L E G       
Sbjct: 498 -----VYVEH-----DIDGTHSDTSVLDFVFES----GVGTKEAIKDKLIEFGFTDEMIA 543

Query: 127 SVLNVLSGGERKRVALA 143
             ++ LSGG + ++ALA
Sbjct: 544 MPISALSGGWKMKLALA 560

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 44/155 (28%), Positives = 69/155 (44%), Gaps = 37/155 (23%)

Query: 8   FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQG--DVD-GQILLNGLEV- 63
           F +T     +S   + G +L I+G SG GKTTLL C++    G    D G+I L+G  + 
Sbjct: 14  FQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLA----GFEQPDSGEISLSGKTIF 69

Query: 64  EKNLMVKVS----GFVPQ------HDLTVDTLTVHEHMTLMAR-----LKMDRNLHHVER 108
            KN  + V     G++ Q      H LTV             R     L         + 
Sbjct: 70  SKNTNLPVRERRLGYLVQEGVLFPH-LTV------------YRNIAYGLGN-GKGRTAQE 115

Query: 109 ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 143
            + ++A+L+  G+ +      + LSGG+++R ALA
Sbjct: 116 RQRIEAMLELTGISELAGRYPHELSGGQQQRAALA 150

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262

 Score = 49.5 bits (119), Expect = 1e-07
 Identities = 39/166 (23%), Positives = 70/166 (42%), Gaps = 46/166 (27%)

Query: 8   FGDTNYKESLSGI---AESGSLLAIMGPSGAGKTTLLACISQ--RIQGDVDGQILLNGLE 62
           +G     E L G+   A +G +++I+G SG+GK+T L CI+   +      G I++NG  
Sbjct: 16  YGGH---EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSE---GAIIVNGQN 69

Query: 63  VEKNLMVKVS----------------GFVPQ------HDLTVDTLTVHEHMTL--MARLK 98
           +                           V Q      H      +TV E++    +  L 
Sbjct: 70  INLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSH------MTVLENVMEAPIQVLG 123

Query: 99  MDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALA 143
           + ++    ERA      L ++G+  + +      LSGG+++RV++A
Sbjct: 124 LSKH-DARERAL---KYLAKVGIDERAQGKYPVHLSGGQQQRVSIA 165

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263

 Score = 49.1 bits (118), Expect = 2e-07
 Identities = 43/148 (29%), Positives = 72/148 (48%), Gaps = 22/148 (14%)

Query: 8   FGDTNYKESLSGIA---ESGSLLAIMGPSGAGKTTLLACISQ--RIQGDVDGQILLNGLE 62
           FG     E L GI      G ++ ++GPSG+GK+T L C++          G+I+++G+ 
Sbjct: 34  FGSL---EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDE---GEIIIDGIN 87

Query: 63  VEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTL--MARLKMDRNLHHVERARTVDAL 115
           ++      N + +  G V Q       +TV  ++TL  M   K  R      +A     L
Sbjct: 88  LKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPRE-KAEAKAM---EL 143

Query: 116 LKELGLLKCKNSVLNVLSGGERKRVALA 143
           L ++GL    ++  + LSGG+ +RVA+A
Sbjct: 144 LDKVGLKDKAHAYPDSLSGGQAQRVAIA 171

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 38/129 (29%), Positives = 69/129 (53%), Gaps = 12/129 (9%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV----EKNLMV--KVSGFV 75
            +G +  ++G SGAGK+TL+ C++  ++   +G +L++G E+    E  L    +  G +
Sbjct: 52  PAGQIYGVIGASGAGKSTLIRCVN-LLERPTEGSVLVDGQELTTLSESELTKARRQIGMI 110

Query: 76  PQHDLTVDTLTVHEHMTL-MARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSG 134
            QH   + + TV  ++ L +      ++    E  R V  LL  +GL    +S  + LSG
Sbjct: 111 FQHFNLLSSRTVFGNVALPLELDNTPKD----EVKRRVTELLSLVGLGDKHDSYPSNLSG 166

Query: 135 GERKRVALA 143
           G+++RVA+A
Sbjct: 167 GQKQRVAIA 175

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257

 Score = 46.7 bits (112), Expect = 1e-06
 Identities = 27/145 (18%), Positives = 53/145 (36%), Gaps = 33/145 (22%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLT 81
             G +  I+GP+G+GK+TL+  I+  ++ D +G++     ++               +L 
Sbjct: 31  NKGDVTLIIGPNGSGKSTLINVITGFLKAD-EGRVYFENKDITN---------KEPAELY 80

Query: 82  -------------VDTLTVHEHMTLMARLKMDRNL--------HHVERA--RTVDALLKE 118
                        +  +TV E++ +      +  L           E         +L+ 
Sbjct: 81  HYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEF 140

Query: 119 LGLLKCKNSVLNVLSGGERKRVALA 143
           L L    +     LSGG+ K V + 
Sbjct: 141 LKLSHLYDRKAGELSGGQMKLVEIG 165

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275

 Score = 46.8 bits (112), Expect = 1e-06
 Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 30/138 (21%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV---EKNLMV---KVSGFV 75
           + G + AI+G +G GK+TL    +  ++    G+IL +   +    K +M     + G V
Sbjct: 32  KRGEVTAILGGNGVGKSTLFQNFNGILKPS-SGRILFDNKPIDYSRKGIMKLRESI-GIV 89

Query: 76  ---PQHDLTVDTLTVHEHMTLMARLKMD-----RNLH--HVERARTVDALLKELGLLKCK 125
              P + L     +V++          D      N+     E  + VD  LK  G+   K
Sbjct: 90  FQDPDNQL-FSA-SVYQ----------DVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLK 137

Query: 126 NSVLNVLSGGERKRVALA 143
           +   + LS G++KRVA+A
Sbjct: 138 DKPTHCLSFGQKKRVAIA 155

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 11/72 (15%)

Query: 14  KESLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVD-GQILLNGLEV----EK 65
              LSG+    + GSL+A++G +G+GK+TL+  I  R+  D + G++ ++ L+V     K
Sbjct: 356 DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIP-RLI-DPERGRVEVDELDVRTVKLK 413

Query: 66  NLMVKVSGFVPQ 77
           +L   +   VPQ
Sbjct: 414 DLRGHI-SAVPQ 424

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 37/136 (27%), Positives = 56/136 (41%), Gaps = 26/136 (19%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACIS--QRIQGDVDGQILLNGLEVEKNLMVKVS------G 73
           E+G    I+GPSGAGKTT +  I+          G++  +   V  N  + V       G
Sbjct: 29  ENGERFGILGPSGAGKTTFMRIIAGLDVPST---GELYFDDRLVASNGKLIVPPEDRKIG 85

Query: 74  FVPQ------HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNS 127
            V Q      +      LT  E++     L     +   E  + V+ + K L +    N 
Sbjct: 86  MVFQTWALYPN------LTAFENIAF--PLTN-MKMSKEEIRKRVEEVAKILDIHHVLNH 136

Query: 128 VLNVLSGGERKRVALA 143
               LSG +++RVALA
Sbjct: 137 FPRELSGAQQQRVALA 152

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266

 Score = 42.6 bits (101), Expect = 3e-05
 Identities = 34/149 (22%), Positives = 63/149 (42%), Gaps = 27/149 (18%)

Query: 9   GDTNYKESLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK 65
           G    K++L  +      G  L + G +G+GK+TLL  ++  I+    G +L +G   + 
Sbjct: 15  GTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT-SGDVLYDGERKKG 73

Query: 66  NLMVKVSGFV---PQHDLTVDTLTVHEHMTLMARLKMD-----RNLH-HVERARTVDALL 116
             + +  G     P+     +   V +          +     +N +   +    V   +
Sbjct: 74  YEIRRNIGIAFQYPEDQFFAE--RVFD----------EVAFAVKNFYPDRDPVPLVKKAM 121

Query: 117 KELGL--LKCKNSVLNVLSGGERKRVALA 143
           + +GL     K+ V   LSGGE++RVA+A
Sbjct: 122 EFVGLDFDSFKDRVPFFLSGGEKRRVAIA 150

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240

 Score = 42.4 bits (101), Expect = 3e-05
 Identities = 32/132 (24%), Positives = 64/132 (48%), Gaps = 20/132 (15%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVS-GFVPQ 77
             G ++ ++G +GAGKTT L+ I+  +     G+I+ NG ++     +++ ++    VP+
Sbjct: 30  PRGQIVTLIGANGAGKTTTLSAIA-GLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPE 88

Query: 78  HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDAL------LKELGLLKCKNSVLNV 131
                  LTV+E++ + A  + D+        R ++ +      LKE         +   
Sbjct: 89  GRRIFPELTVYENLMMGAYNRKDKE----GIKRDLEWIFSLFPRLKER-----LKQLGGT 139

Query: 132 LSGGERKRVALA 143
           LSGGE++ +A+ 
Sbjct: 140 LSGGEQQMLAIG 151

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260

 Score = 41.4 bits (98), Expect = 7e-05
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 14/70 (20%)

Query: 17  LSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS- 72
           L  I     SG+  A++G +G+GK+T+   +  R   D +G I + G  V K      + 
Sbjct: 36  LKSINFFIPSGTTCALVGHTGSGKSTIAKLL-YRFY-DAEGDIKIGGKNVNK---YNRNS 90

Query: 73  -----GFVPQ 77
                G VPQ
Sbjct: 91  IRSIIGIVPQ 100

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 15/74 (20%)

Query: 14 KESLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVD-GQILLNGLEVEKNLMV 69
          ++ L  I   A+  S++A  GPSG GK+T+ + + +R       G+I ++G  ++    +
Sbjct: 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL-ERFY-QPTAGEITIDGQPIDN---I 69

Query: 70 KVS------GFVPQ 77
           +       GFV Q
Sbjct: 70 SLENWRSQIGFVSQ 83

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582

 Score = 39.5 bits (93), Expect = 4e-04
 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 15/72 (20%)

Query: 17  LSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVD-GQILLNGLEVEKNLMVKVS 72
           L  I     +G  +A++G SG+GK+T+ + I  R   D+D G IL++G ++ +     ++
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLI-TRFY-DIDEGHILMDGHDLRE---YTLA 413

Query: 73  ------GFVPQH 78
                   V Q+
Sbjct: 414 SLRNQVALVSQN 425

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229

 Score = 38.7 bits (91), Expect = 5e-04
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 10 DTNYKESLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG 60
          +      L  I    E G LLA+ G +GAGKT+LL  I   ++   +G+I  +G
Sbjct: 17 EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE-PSEGKIKHSG 69

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582

 Score = 39.5 bits (93), Expect = 5e-04
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 15/79 (18%)

Query: 10  DTNYKESLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVD-GQILLNGLEVEK 65
               K +LS +      G  +A++G SG+GK+T+    + R   DVD G I L+G +V  
Sbjct: 352 QGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFT-RFY-DVDSGSICLDGHDVRD 409

Query: 66  NLMVKVS------GFVPQH 78
               K++        V Q+
Sbjct: 410 ---YKLTNLRRHFALVSQN 425

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	212
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	100.0
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	100.0
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	100.0
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	100.0
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	100.0
1b0u_A	262	Histidine permease; ABC transporter, transport pro	100.0
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	100.0
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	100.0
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	100.0
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	100.0
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	100.0
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	100.0
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	100.0
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	100.0
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	100.0
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	100.0
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
1ji0_A	240	ABC transporter; ATP binding protein, structural g	100.0
1g6h_A	257	High-affinity branched-chain amino acid transport	100.0
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	100.0
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	100.0
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	100.0
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	100.0
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	100.0
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	100.0
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	100.0
1sgw_A	214	Putative ABC transporter; structural genomics, P p	100.0
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	100.0
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	100.0
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	100.0
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	100.0
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	100.0
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	100.0
2ghi_A	260	Transport protein; multidrug resistance protein, M	100.0
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	100.0
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	100.0
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	100.0
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	100.0
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	100.0
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	100.0
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	100.0
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	100.0
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	100.0
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	100.0
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	100.0
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	100.0
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	100.0
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	100.0
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	100.0
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	100.0
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	100.0
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	100.0
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	100.0
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	100.0
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	100.0
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	100.0
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	100.0
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	100.0
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	100.0
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.98
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.97
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.97
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.97
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.97
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.97
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.96
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.94
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.94
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.94
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.94
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.93
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.92
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.92
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.92
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.91
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.91
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.91
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.91
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.91
2og2_A	359	Putative signal recognition particle receptor; nuc	99.9
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.88
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.87
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.85
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	99.85
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	99.83
2eyu_A	261	Twitching motility protein PILT; pilus retraction	99.83
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	99.82
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.82
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	99.81
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.81
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.81
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.81
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	99.81
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	99.81
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	99.8
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.8
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.8
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	99.79
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.79
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.77
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.76
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.76
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.76
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.75
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	99.75
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	99.75
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	99.75
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	99.75
1p9r_A	418	General secretion pathway protein E; bacterial typ	99.74
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	99.74
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	99.74
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.73
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	99.73
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	99.72
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	99.71
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.71
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	99.71
4a74_A	231	DNA repair and recombination protein RADA; hydrola	99.71
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	99.69
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	99.69
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.68
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.68
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	99.66
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	99.66
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	99.62
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	99.62
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	99.61
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	99.61
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	99.6
2ewv_A	372	Twitching motility protein PILT; pilus retraction	99.6
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.59
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	99.58
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	99.57
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	99.56
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.56
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	99.55
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	99.52
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	99.49
3kta_B	173	Chromosome segregation protein SMC; structural mai	99.49
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	99.47
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	99.47
2cvh_A	220	DNA repair and recombination protein RADB; filamen	99.46
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	99.44
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.41
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	99.41
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	99.41
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	99.4
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	99.4
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	99.39
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	99.39
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	99.35
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	99.35
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	99.3
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	99.28
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.18
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	99.17
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	99.16
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	99.13
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	99.12
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	99.09
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.09
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.05
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	99.03
3kta_A	182	Chromosome segregation protein SMC; structural mai	99.03
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	99.01
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	99.0
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.95
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	98.95
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.94
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.94
2r6a_A	454	DNAB helicase, replicative helicase; replication,	98.93
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.9
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.86
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.86
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	98.85
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.71
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.71
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.69
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	98.67
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	98.65
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	98.63
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.6
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.55
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.55
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	98.54
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.54
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.53
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.49
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.47
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	98.46
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	98.42
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	98.39
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	98.37
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	98.35
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.34
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	98.33
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	98.28
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	98.28
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	98.25
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	98.25
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	98.21
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.19
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.17
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.17
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	98.15
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	98.14
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	98.14
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	98.07
3ice_A	422	Transcription termination factor RHO; transcriptio	98.07
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	98.07
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	98.07
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	98.0
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.99
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.98
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	97.95
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.95
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.94
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	97.92
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.92
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.9
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.9
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.86
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.83
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	97.83
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	97.82
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	97.76
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.72
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.72
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.71
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.71
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.7
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	97.65
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.59
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.57
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.56
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.55
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.51
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.49
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	97.48
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.46
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.46
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.46
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.45
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.44
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.43
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.43
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.41
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.39
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.38
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.37
1via_A	175	Shikimate kinase; structural genomics, transferase	97.37
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.37
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	97.37
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.35
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.34
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.32
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	97.31
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.31
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	97.3
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.29
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.28
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	97.28
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.26
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.25
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.24
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.24
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.19
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	97.19
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.17
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	97.17
2ged_A	193	SR-beta, signal recognition particle receptor beta	97.16
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.16
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	97.14
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.12
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.1
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	97.09
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	97.08
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	97.07
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	97.07
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.07
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	97.05
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	97.05
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	97.05
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	97.05
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.04
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	97.03
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.03
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	97.02
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	97.02
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.02
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	97.02
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	97.01
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.01
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	97.01
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	97.01
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	97.01
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	97.01
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.0
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	97.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	97.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	97.0
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.99
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	96.99
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	96.99
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	96.98
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	96.98
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.97
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	96.96
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.96
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	96.95
3bos_A	242	Putative DNA replication factor; P-loop containing	96.95
2z43_A	324	DNA repair and recombination protein RADA; archaea	96.95
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	96.95
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.95
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.94
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	96.94
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	96.93
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.93
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.92
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	96.91
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	96.91
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.91
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	96.91
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.91
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	96.9
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	96.9
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	96.9
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	96.9
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	96.9
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.89
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	96.88
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.88
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	96.88
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.88
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	96.87
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	96.87
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.87
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.86
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.86
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	96.84
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	96.84
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	96.84
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	96.83
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	96.82
1nrj_B	218	SR-beta, signal recognition particle receptor beta	96.82
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	96.81
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	96.81
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	96.8
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.8
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	96.79
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	96.78
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	96.78
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.77
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	96.77
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	96.76
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	96.76
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	96.76
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	96.75
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	96.74
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	96.74
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	96.73
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	96.72
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.72
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	96.72
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	96.71
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	96.71
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	96.7
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	96.7
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	96.7
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	96.7
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.7
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	96.7
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.69
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.69
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	96.69
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.68
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	96.67
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	96.67
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	96.67
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	96.65
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	96.64
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	96.64
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	96.64
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	96.64
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	96.63
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	96.63
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	96.62
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	96.62
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	96.62
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	96.62
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.62
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	96.62
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	96.61
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	96.61
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	96.61
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.61
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	96.6
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	96.6
3llu_A	196	RAS-related GTP-binding protein C; structural geno	96.6
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	96.6
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	96.6
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.59
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	96.59
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	96.58
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.58
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	96.58
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	96.58
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.58
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	96.58
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.57
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	96.56
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	96.56
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.55
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.54
2fh5_B	214	SR-beta, signal recognition particle receptor beta	96.54
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	96.53
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	96.53
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	96.51
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.51
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	96.5
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.5
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	96.5
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	96.49
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	96.49
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	96.49
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	96.48
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	96.45
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.45
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	96.43
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	96.41
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	96.4
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	96.39
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.39
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.38
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.38
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	96.37
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	96.36
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.35
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.35
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	96.32
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	96.32
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.32
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.31
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	96.3
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	96.3
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	96.29
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	96.28
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	96.25
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	96.25
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	96.23
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	96.21
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	96.21
1u94_A	356	RECA protein, recombinase A; homologous recombinat	96.17
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	96.16
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	96.15
3pvs_A	447	Replication-associated recombination protein A; ma	96.14
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	96.14
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.13
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.1
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	96.07
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	96.06
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.04
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.01
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	95.97
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	95.94
1wxq_A	397	GTP-binding protein; structural genomics, riken st	95.92
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	95.89
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	95.89
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	95.87
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	95.85
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	94.83
2qgz_A	308	Helicase loader, putative primosome component; str	95.8
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	95.8
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	95.78
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	95.78
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	95.77
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	95.75
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	95.73
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.72
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.66
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	95.66
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	95.66
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	95.66
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	95.65
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	95.64
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	95.61
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	95.59
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.58
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	95.57
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	95.56
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	95.55
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	95.55
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.53
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	95.51
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	95.48
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	95.47
2r44_A	331	Uncharacterized protein; putative ATPase, structur	95.47
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	95.47
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	95.46
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	95.41

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=100.00  E-value=2e-56  Score=388.05  Aligned_cols=207  Identities=22%  Similarity=0.274  Sum_probs=187.8

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHD   79 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~   79 (212)
                      +++++|.|++..+|+||||+|++||+++|+||||||||||||+|+|++.| ++|+|+++|+++... ..++.+|||||++
T Consensus         6 ~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p-~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~   84 (381)
T 3rlf_A            6 LQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI-TSGDLFIGEKRMNDTPPAERGVGMVFQSY   84 (381)
T ss_dssp             EEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC-SEEEEEETTEECTTCCGGGSCEEEECTTC
T ss_pred             EEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCC-CCeEEEECCEECCCCCHHHCCEEEEecCC
Confidence            47899999999999999999999999999999999999999999999999 699999999998643 3356799999999


Q ss_pred             CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCC
Q psy8250          80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDL  159 (212)
Q Consensus        80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt  159 (212)
                      .+|+.+||+||+.|+...+   ..+..+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus        85 ~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPt  161 (381)
T 3rlf_A           85 ALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL  161 (381)
T ss_dssp             CCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred             cCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence            9999999999999987654   3456677788999999999999999999999999999999999999999999999999


Q ss_pred             C-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250         160 T-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       160 ~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      + ||+..+.++++.|++++++ +     +|||++++... +  .+|++|+++..|+++++.+
T Consensus       162 s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~  223 (381)
T 3rlf_A          162 SNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH  223 (381)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence            9 9999999999999999765 2     38999998775 3  4799999999999999864

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=100.00  E-value=1.2e-56  Score=386.94  Aligned_cols=207  Identities=24%  Similarity=0.287  Sum_probs=183.5

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeC----Cc-ccccceEEEE
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV----EK-NLMVKVSGFV   75 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~----~~-~~~~~~i~~v   75 (212)
                      +++++|+|++..+|+||||+|++||+++|+||||||||||||+|+|++.| ++|+|.++|+++    .. ...++.+|||
T Consensus         7 i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p-~~G~I~i~G~~i~~~~~~~~~~~r~ig~v   85 (359)
T 3fvq_A            7 IGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQP-DSGEISLSGKTIFSKNTNLPVRERRLGYL   85 (359)
T ss_dssp             EEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCC-SEEEEEETTEEEESSSCBCCGGGSCCEEE
T ss_pred             EEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCC-CCcEEEECCEECcccccccchhhCCEEEE
Confidence            46899999999999999999999999999999999999999999999999 699999999988    22 2345679999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEe
Q psy8250          76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVP  155 (212)
Q Consensus        76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llil  155 (212)
                      ||++.+|+.+||+||+.|+...+   ..+..+..+++.++++.+|+.++.++++.+|||||||||+|||||+.+|++|||
T Consensus        86 fQ~~~l~p~ltV~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLL  162 (359)
T 3fvq_A           86 VQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILL  162 (359)
T ss_dssp             CTTCCCCTTSCHHHHHHTTSTTS---SCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             eCCCcCCCCCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            99999999999999999875432   233456677899999999999999999999999999999999999999999999


Q ss_pred             cCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250         156 QHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       156 DEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      ||||+ ||+..+.++++.|.++.++ +     +|||++++... +  .+|++|+++..|+++++.+
T Consensus       163 DEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~  228 (359)
T 3fvq_A          163 DEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYR  228 (359)
T ss_dssp             ESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             eCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHh
Confidence            99999 9999999999988887554 2     38999998765 3  4789999999999999864

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=100.00  E-value=5.3e-56  Score=383.31  Aligned_cols=207  Identities=23%  Similarity=0.336  Sum_probs=184.6

Q ss_pred             CcccccccCC----cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc------cccc
Q psy8250           1 METFHPLFGD----TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN------LMVK   70 (212)
Q Consensus         1 ~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~------~~~~   70 (212)
                      ++++++.|++    ..+|+||||+|++||++||+||||||||||+|+|+|++.| ++|+|.++|+++...      ..++
T Consensus        27 v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p-~~G~I~i~G~~i~~~~~~~~~~~r~  105 (366)
T 3tui_C           27 LSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP-TEGSVLVDGQELTTLSESELTKARR  105 (366)
T ss_dssp             EEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC-SEEEEEETTEECSSCCHHHHHHHHT
T ss_pred             EEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCC-CceEEEECCEECCcCCHHHHHHHhC
Confidence            3689999964    4699999999999999999999999999999999999999 699999999998642      2356


Q ss_pred             eEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCC
Q psy8250          71 VSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQ  150 (212)
Q Consensus        71 ~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p  150 (212)
                      .+|||||++.+++.+||+||+.++....   ..+..+..+++.++|+.+|+.+..++++.+|||||||||+|||||+.+|
T Consensus       106 ~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P  182 (366)
T 3tui_C          106 QIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNP  182 (366)
T ss_dssp             TEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCC
T ss_pred             cEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence            7999999999999999999999987653   2456677788999999999999999999999999999999999999999


Q ss_pred             CeEEecCCCC-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250         151 SGFVPQHDLT-VDTLTVHEHMTLMARLKMDR------NLHHVERARTV-D--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       151 ~llilDEPt~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      ++|||||||+ ||+.++..++++|++++++.      +|||++.+... +  .+|++|+++++|+++++..
T Consensus       183 ~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~  253 (366)
T 3tui_C          183 KVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS  253 (366)
T ss_dssp             SEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHS
T ss_pred             CEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            9999999999 99999999999999997652      37999998775 3  4789999999999998753

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=100.00  E-value=7.4e-56  Score=363.18  Aligned_cols=210  Identities=22%  Similarity=0.253  Sum_probs=177.1

Q ss_pred             CcccccccCC----cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccc-------cc
Q psy8250           1 METFHPLFGD----TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL-------MV   69 (212)
Q Consensus         1 ~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~-------~~   69 (212)
                      +++++++|++    ..+|+||||+|++||+++|+||||||||||+|+|+|+++| ++|+|+++|.++....       .+
T Consensus         4 ~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p-~~G~I~~~g~~~~~~~~~~~~~~~~   82 (235)
T 3tif_A            4 LKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP-TEGEVYIDNIKTNDLDDDELTKIRR   82 (235)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEETTEECTTCCHHHHHHHHH
T ss_pred             EEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-CceEEEECCEEcccCCHHHHHHHhh
Confidence            4689999974    4599999999999999999999999999999999999999 6999999999985421       13


Q ss_pred             ceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccc-cCCCCCCCChHHHHHHHHHHHHhh
Q psy8250          70 KVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKC-KNSVLNVLSGGERKRVALAVQTII  148 (212)
Q Consensus        70 ~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~~LSgGqrqRv~lA~al~~  148 (212)
                      +.+|||||++.+++.+||+||+.++.........+..+..+++.++++.+++.+. .++++.+|||||||||+|||||+.
T Consensus        83 ~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~  162 (235)
T 3tif_A           83 DKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALAN  162 (235)
T ss_dssp             HHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred             ccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHc
Confidence            4699999999999999999999987654322233456667788999999999875 499999999999999999999999


Q ss_pred             CCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250         149 VQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTVD--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       149 ~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      +|++|||||||+ ||+.++.+++++|++++++ +     +|||++.+..++  .+|++|+++..++++++.+
T Consensus       163 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  234 (235)
T 3tif_A          163 NPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGFDD  234 (235)
T ss_dssp             CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC----
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhhhcc
Confidence            999999999999 9999999999999999765 3     379998653333  4788999999999888754

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=100.00  E-value=3.6e-55  Score=377.66  Aligned_cols=207  Identities=24%  Similarity=0.306  Sum_probs=185.0

Q ss_pred             Cccccccc-CCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCC
Q psy8250           1 METFHPLF-GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQH   78 (212)
Q Consensus         1 ~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~   78 (212)
                      ++++++.| +++.+|+||||+|++||+++|+||||||||||||+|+|++.| ++|+|.++|+++... ..++.+|||||+
T Consensus        17 ~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-~~G~I~i~g~~i~~~~~~~r~ig~v~Q~   95 (355)
T 1z47_A           17 FVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERP-TKGDVWIGGKRVTDLPPQKRNVGLVFQN   95 (355)
T ss_dssp             EEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC-SEEEEEETTEECTTCCGGGSSEEEECGG
T ss_pred             EEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC-CccEEEECCEECCcCChhhCcEEEEecC
Confidence            46899999 888899999999999999999999999999999999999999 699999999998542 345679999999


Q ss_pred             CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250          79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD  158 (212)
Q Consensus        79 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP  158 (212)
                      +.+|+.+||+||+.|+...+   ..+..+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++||||||
T Consensus        96 ~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP  172 (355)
T 1z47_A           96 YALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEP  172 (355)
T ss_dssp             GCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred             cccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            99999999999999976543   234556677899999999999999999999999999999999999999999999999


Q ss_pred             CC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250         159 LT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       159 t~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      |+ ||+..+.+++++|++++++ .     +|||.+++... +  .+|++|+++..|+++++.+
T Consensus       173 ~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~  235 (355)
T 1z47_A          173 FAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYE  235 (355)
T ss_dssp             TCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             cccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            99 9999999999999999765 2     38999998764 3  4789999999999998864

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=100.00  E-value=3.2e-55  Score=364.71  Aligned_cols=206  Identities=22%  Similarity=0.309  Sum_probs=180.7

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---------------
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---------------   65 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---------------   65 (212)
                      ++++++.|+++.+|+||||+|++|++++|+||||||||||+|+|+|+++| ++|+|.++|+++..               
T Consensus         9 i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~~~~~~~   87 (262)
T 1b0u_A            9 VIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP-SEGAIIVNGQNINLVRDKDGQLKVADKNQ   87 (262)
T ss_dssp             EEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEETTEECCEEECTTSSEEESCHHH
T ss_pred             EeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEECCEEccccccccccccccChhh
Confidence            36899999988899999999999999999999999999999999999999 69999999998851               


Q ss_pred             -ccccceEEEEcCCCCCCCCCCHHHHHHHHH-hhhcccCCCHHHHHHHHHHHHHHcCCccc-cCCCCCCCChHHHHHHHH
Q psy8250          66 -NLMVKVSGFVPQHDLTVDTLTVHEHMTLMA-RLKMDRNLHHVERARTVDALLKELGLLKC-KNSVLNVLSGGERKRVAL  142 (212)
Q Consensus        66 -~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~~LSgGqrqRv~l  142 (212)
                       ..+++.+|||||++.+++.+||+||+.++. ..+   ..+..+..+++.++++.+|+.+. .++++.+|||||||||+|
T Consensus        88 ~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~l  164 (262)
T 1b0u_A           88 LRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSI  164 (262)
T ss_dssp             HHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHH
T ss_pred             HHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHH
Confidence             123467999999999999999999999854 322   22344556778999999999998 999999999999999999


Q ss_pred             HHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         143 AVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       143 A~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      ||||+.+|++|||||||+ ||+.++..++++|+++++++     .|||++.+... +  .+|++|++++.|+++++.
T Consensus       165 AraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  241 (262)
T 1b0u_A          165 ARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVF  241 (262)
T ss_dssp             HHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            999999999999999999 99999999999999997653     27999988764 3  478899999999998874

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=100.00  E-value=4.2e-55  Score=364.07  Aligned_cols=206  Identities=22%  Similarity=0.349  Sum_probs=180.7

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCC--cc---cccceEEEE
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE--KN---LMVKVSGFV   75 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~--~~---~~~~~i~~v   75 (212)
                      ++++++.|+++.+|+||||+|++|++++|+||||||||||+|+|+|+++| ++|+|.++|+++.  ..   .+++.++||
T Consensus        27 i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p-~~G~I~~~g~~i~~~~~~~~~~~~~i~~v  105 (263)
T 2olj_A           27 VHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDF-DEGEIIIDGINLKAKDTNLNKVREEVGMV  105 (263)
T ss_dssp             EEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEETTEESSSTTCCHHHHHHHEEEE
T ss_pred             EEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCC-CCcEEEECCEECCCccccHHHHhCcEEEE
Confidence            36899999988899999999999999999999999999999999999999 6999999999884  11   235679999


Q ss_pred             cCCCCCCCCCCHHHHHHHHH-hhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEE
Q psy8250          76 PQHDLTVDTLTVHEHMTLMA-RLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFV  154 (212)
Q Consensus        76 ~Q~~~~~~~ltv~e~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~lli  154 (212)
                      ||++.+++.+||+||+.++. ...   ..+..+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++||
T Consensus       106 ~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lll  182 (263)
T 2olj_A          106 FQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIML  182 (263)
T ss_dssp             CSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred             eCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEE
Confidence            99999999999999999864 322   23344556678999999999999999999999999999999999999999999


Q ss_pred             ecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         155 PQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       155 lDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      |||||+ ||+.++..++++|+++++++     .|||++.+... +  .+|++|++++.|+++++.
T Consensus       183 LDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  247 (263)
T 2olj_A          183 FDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLF  247 (263)
T ss_dssp             EESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             EeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            999999 99999999999999997653     37999988764 3  478899999999998874

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=100.00  E-value=6e-55  Score=377.32  Aligned_cols=207  Identities=25%  Similarity=0.319  Sum_probs=184.7

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHD   79 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~   79 (212)
                      ++++++.|+++.+|++|||++++|++++|+||||||||||||+|+|++.| ++|+|.++|+++... ..++.+|||||++
T Consensus         6 ~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~   84 (362)
T 2it1_A            6 LENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKP-TSGKIYFDEKDVTELPPKDRNVGLVFQNW   84 (362)
T ss_dssp             EEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC-SEEEEEETTEECTTSCGGGTTEEEECTTC
T ss_pred             EEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC-CceEEEECCEECCcCCHhHCcEEEEecCc
Confidence            36899999988899999999999999999999999999999999999999 699999999998542 2356799999999


Q ss_pred             CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCC
Q psy8250          80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDL  159 (212)
Q Consensus        80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt  159 (212)
                      .+|+.+||+||+.|+...+   ..+..+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus        85 ~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~  161 (362)
T 2it1_A           85 ALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPL  161 (362)
T ss_dssp             CCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGG
T ss_pred             ccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence            9999999999999986543   2345566678999999999999999999999999999999999999999999999999


Q ss_pred             C-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250         160 T-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       160 ~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      + ||+..+.+++++|++++++ +     +|||.+++... +  .+|++|+++..|+++++.+
T Consensus       162 s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~  223 (362)
T 2it1_A          162 SNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYY  223 (362)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            9 9999999999999999764 2     37999988764 3  4789999999999998864

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=100.00  E-value=8e-55  Score=378.07  Aligned_cols=207  Identities=24%  Similarity=0.289  Sum_probs=184.4

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc------c-cccceEE
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK------N-LMVKVSG   73 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~------~-~~~~~i~   73 (212)
                      +++++++|+++.+|+||||++++|++++|+||||||||||||+|+|++.| ++|+|.++|+++..      . ..++.+|
T Consensus         6 ~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-~~G~I~i~g~~~~~~~~~~~~~~~~r~ig   84 (372)
T 1g29_1            6 LVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP-SRGQIYIGDKLVADPEKGIFVPPKDRDIA   84 (372)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC-SEEEEEETTEEEEEGGGTEECCGGGSSEE
T ss_pred             EEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCC-CccEEEECCEECccccccccCCHhHCCEE
Confidence            36899999988899999999999999999999999999999999999999 69999999998743      1 2356799


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeE
Q psy8250          74 FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGF  153 (212)
Q Consensus        74 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~ll  153 (212)
                      ||||++.+|+.+||+||+.|+...+   ..+..+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|
T Consensus        85 ~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lL  161 (372)
T 1g29_1           85 MVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVF  161 (372)
T ss_dssp             EECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEE
T ss_pred             EEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence            9999999999999999999986543   2345556678999999999999999999999999999999999999999999


Q ss_pred             EecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250         154 VPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       154 ilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      ||||||+ ||+..+.+++++|++++++ +     +|||.+++... +  .+|++|+++..|+++++.+
T Consensus       162 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~  229 (372)
T 1g29_1          162 LMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD  229 (372)
T ss_dssp             EEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             EECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence            9999999 9999999999999999765 2     37999988764 3  4789999999999999864

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=100.00  E-value=3.6e-55  Score=378.31  Aligned_cols=207  Identities=22%  Similarity=0.289  Sum_probs=183.1

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHD   79 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~   79 (212)
                      ++++++.|+++.+|+++||++++|++++|+||||||||||||+|+|++.| ++|+|.++|+++... ..++.+|||||++
T Consensus         6 ~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~   84 (359)
T 2yyz_A            6 VVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKP-TSGEIYFDDVLVNDIPPKYREVGMVFQNY   84 (359)
T ss_dssp             EEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCC-SEEEEEETTEECTTSCGGGTTEEEECSSC
T ss_pred             EEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCC-CccEEEECCEECCCCChhhCcEEEEecCc
Confidence            36899999988899999999999999999999999999999999999999 699999999998543 2356799999999


Q ss_pred             CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCC
Q psy8250          80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDL  159 (212)
Q Consensus        80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt  159 (212)
                      .+|+.+||+||+.|+...+   ..+..+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus        85 ~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~  161 (359)
T 2yyz_A           85 ALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPL  161 (359)
T ss_dssp             CCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred             ccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence            9999999999999865432   2233444567899999999999999999999999999999999999999999999999


Q ss_pred             C-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250         160 T-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       160 ~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      + ||+..+.+++++|++++++ +     +|||.+++... +  .+|++|+++..|+++++.+
T Consensus       162 s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~  223 (359)
T 2yyz_A          162 SNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYD  223 (359)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            9 9999999999999999765 2     37999988764 3  4789999999999999864

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=100.00  E-value=4.9e-55  Score=377.20  Aligned_cols=207  Identities=21%  Similarity=0.241  Sum_probs=183.8

Q ss_pred             CcccccccCCcc--eeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc------ccccceE
Q psy8250           1 METFHPLFGDTN--YKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK------NLMVKVS   72 (212)
Q Consensus         1 ~~~l~~~~~~~~--~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~------~~~~~~i   72 (212)
                      ++++++.|+++.  +|+||||+|++|++++|+||||||||||||+|+|++.| ++|+|.++|+++..      ...++.+
T Consensus         6 i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-~~G~I~i~g~~i~~~~~~~~~~~~r~i   84 (353)
T 1oxx_K            6 VKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP-STGELYFDDRLVASNGKLIVPPEDRKI   84 (353)
T ss_dssp             EEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCC-SEEEEEETTEEEEETTEESSCGGGSCE
T ss_pred             EEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC-CceEEEECCEECcccccccCChhhCCE
Confidence            368999999888  99999999999999999999999999999999999999 69999999998743      2345679


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCe
Q psy8250          73 GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSG  152 (212)
Q Consensus        73 ~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~l  152 (212)
                      |||||++.+|+.+||+||+.|+...+   ..+..+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++
T Consensus        85 g~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~l  161 (353)
T 1oxx_K           85 GMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSL  161 (353)
T ss_dssp             EEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred             EEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence            99999999999999999999865432   234556667899999999999999999999999999999999999999999


Q ss_pred             EEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250         153 FVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       153 lilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      |||||||+ ||+..+.+++++|++++++ +     +|||.+++... +  .+|++|+++..|+++++.+
T Consensus       162 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~  230 (353)
T 1oxx_K          162 LLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD  230 (353)
T ss_dssp             EEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             EEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            99999999 9999999999999999764 2     37999988764 3  4789999999999998864

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=100.00  E-value=2.1e-55  Score=367.94  Aligned_cols=206  Identities=22%  Similarity=0.280  Sum_probs=179.7

Q ss_pred             CcccccccCC-cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc-----ccccceEEE
Q psy8250           1 METFHPLFGD-TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-----NLMVKVSGF   74 (212)
Q Consensus         1 ~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~-----~~~~~~i~~   74 (212)
                      +++++++|++ ..+|+||||+|++||+++|+||||||||||+|+|+|+++| ++|+|+++|+++..     ..+++.+||
T Consensus        10 i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p-~~G~I~~~G~~i~~~~~~~~~~~~~ig~   88 (275)
T 3gfo_A           10 VEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKP-SSGRILFDNKPIDYSRKGIMKLRESIGI   88 (275)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEETTEECCCSHHHHHHHHHSEEE
T ss_pred             EEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC-CCeEEEECCEECCcccccHHHHhCcEEE
Confidence            4689999975 4599999999999999999999999999999999999999 69999999999842     124567999


Q ss_pred             EcCCCC-CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeE
Q psy8250          75 VPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGF  153 (212)
Q Consensus        75 v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~ll  153 (212)
                      |||++. .++.+||+||+.++....   ..+..+..+++.++++.+|+.+..++++.+|||||||||+|||||+.+|++|
T Consensus        89 v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lL  165 (275)
T 3gfo_A           89 VFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVL  165 (275)
T ss_dssp             ECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred             EEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            999973 445789999999976543   3456667788999999999999999999999999999999999999999999


Q ss_pred             EecCCCC-CChhhHHHHHHHHHHHH-hhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         154 VPQHDLT-VDTLTVHEHMTLMARLK-MDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       154 ilDEPt~-lD~~~~~~~~~~l~~l~-~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      ||||||+ ||+.++..++++|++++ +++     +|||++.+... +  .+|++|+++++|+++++.
T Consensus       166 lLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~  232 (275)
T 3gfo_A          166 ILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF  232 (275)
T ss_dssp             EEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHT
T ss_pred             EEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence            9999999 99999999999999997 443     37999888653 3  478899999999998874

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=1.1e-54  Score=360.38  Aligned_cols=206  Identities=19%  Similarity=0.273  Sum_probs=181.0

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc--cccceEEEEcCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN--LMVKVSGFVPQH   78 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~--~~~~~i~~v~Q~   78 (212)
                      ++++++.|+++.+|++|||+|++|++++|+||||||||||+|+|+|+++| ++|+|.++|+++...  .+++.+||+||+
T Consensus        18 i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p-~~G~I~~~g~~~~~~~~~~~~~i~~v~q~   96 (256)
T 1vpl_A           18 VKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP-SSGIVTVFGKNVVEEPHEVRKLISYLPEE   96 (256)
T ss_dssp             EEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEETTEETTTCHHHHHTTEEEECTT
T ss_pred             EEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEECCccHHHHhhcEEEEcCC
Confidence            46899999988999999999999999999999999999999999999998 699999999998532  245679999999


Q ss_pred             CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250          79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD  158 (212)
Q Consensus        79 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP  158 (212)
                      +.+++.+||+||+.++...+.   .+..+..+++.++++.+|+.+..++++.+|||||||||+|||||+.+|++||||||
T Consensus        97 ~~l~~~ltv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEP  173 (256)
T 1vpl_A           97 AGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEP  173 (256)
T ss_dssp             CCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred             CCCCCCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            999999999999998654432   23344456788999999999999999999999999999999999999999999999


Q ss_pred             CC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         159 LT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       159 t~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      |+ ||+.++..++++|+++++++     .||+++.+... +  .+|++|++++.|+++++.
T Consensus       174 ts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  234 (256)
T 1vpl_A          174 TSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELK  234 (256)
T ss_dssp             TTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHH
T ss_pred             ccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHH
Confidence            99 99999999999999997653     37999988653 3  478899999999988874

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=100.00  E-value=7.1e-55  Score=363.35  Aligned_cols=204  Identities=22%  Similarity=0.285  Sum_probs=180.5

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEEEcC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGFVPQ   77 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~v~Q   77 (212)
                      ++++++.|+++.+|++|||+|++||++||+||||||||||+|+|+|+++| ++|+|.++|+++...   .+++.++|++|
T Consensus        14 ~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-~~G~I~~~g~~~~~~~~~~~~~~i~~v~q   92 (266)
T 4g1u_C           14 ASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSP-SHGECHLLGQNLNSWQPKALARTRAVMRQ   92 (266)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCC-SSCEEEETTEETTTSCHHHHHHHEEEECS
T ss_pred             EEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCcEEEECCEECCcCCHHHHhheEEEEec
Confidence            36899999999999999999999999999999999999999999999999 699999999998642   34567999999


Q ss_pred             CCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhh------CCC
Q psy8250          78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTII------VQS  151 (212)
Q Consensus        78 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~------~p~  151 (212)
                      ++.+++.+||+||+.++...+     ...+..+++.++++.+++.+..++++.+|||||||||+|||||+.      +|+
T Consensus        93 ~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~  167 (266)
T 4g1u_C           93 YSELAFPFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPR  167 (266)
T ss_dssp             CCCCCSCCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCE
T ss_pred             CCccCCCCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCC
Confidence            999888999999999865432     112345678899999999999999999999999999999999999      999


Q ss_pred             eEEecCCCC-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         152 GFVPQHDLT-VDTLTVHEHMTLMARLKMDR------NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       152 llilDEPt~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      +|||||||+ ||+.++.+++++|++++++.      .|||++.+... +  .+|++|+++++|+++++.
T Consensus       168 lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~  236 (266)
T 4g1u_C          168 WLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL  236 (266)
T ss_dssp             EEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred             EEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence            999999999 99999999999999997653      37999998764 3  478999999999999874

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=100.00  E-value=1e-54  Score=354.04  Aligned_cols=201  Identities=23%  Similarity=0.257  Sum_probs=174.8

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccc------c-cceEE
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL------M-VKVSG   73 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~------~-~~~i~   73 (212)
                      ++++++.|+++.+|+||||+|++|++++|+||||||||||+|+|+|+++| ++|+|.++|+++....      . ++.++
T Consensus         7 ~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~~~~~i~   85 (224)
T 2pcj_A            7 AENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAP-TEGKVFLEGKEVDYTNEKELSLLRNRKLG   85 (224)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCC-SEEEEEETTEECCSSCHHHHHHHHHHHEE
T ss_pred             EEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEECCCCCHHHHHHHHhCcEE
Confidence            36899999988899999999999999999999999999999999999998 6999999999985421      1 25699


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeE
Q psy8250          74 FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGF  153 (212)
Q Consensus        74 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~ll  153 (212)
                      |+||++.+++.+||+||+.++...+   ..+..+..+++.++++.+|+.+..++++.+|||||||||+|||||+.+|++|
T Consensus        86 ~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~ll  162 (224)
T 2pcj_A           86 FVFQFHYLIPELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILL  162 (224)
T ss_dssp             EECSSCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEE
T ss_pred             EEecCcccCCCCCHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence            9999999999999999999876543   2234455667899999999999999999999999999999999999999999


Q ss_pred             EecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHHH--HHHHhcCeeecCC
Q psy8250         154 VPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTVD--ALLKELGLLKCRP  205 (212)
Q Consensus       154 ilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~~--~~l~~g~~~~~~~  205 (212)
                      ||||||+ ||+.++..++++|+++++++     .|||++.+..++  .+|++|+++++|+
T Consensus       163 lLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~  222 (224)
T 2pcj_A          163 FADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT  222 (224)
T ss_dssp             EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence            9999999 99999999999999997653     279988763223  3678999988775

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=100.00  E-value=9.5e-55  Score=377.29  Aligned_cols=206  Identities=24%  Similarity=0.281  Sum_probs=177.3

Q ss_pred             cccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCCC
Q psy8250           2 ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHDL   80 (212)
Q Consensus         2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~~   80 (212)
                      +++++.|+++.+|+++||+|++|++++|+||||||||||||+|+|++.| ++|+|.++|+++... ..++.+|||||++.
T Consensus        15 ~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~   93 (372)
T 1v43_A           15 ENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP-TEGRIYFGDRDVTYLPPKDRNISMVFQSYA   93 (372)
T ss_dssp             EEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC-SEEEEEETTEECTTSCGGGGTEEEEEC---
T ss_pred             EEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC-CceEEEECCEECCCCChhhCcEEEEecCcc
Confidence            6899999988899999999999999999999999999999999999999 699999999998543 23567999999999


Q ss_pred             CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC
Q psy8250          81 TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT  160 (212)
Q Consensus        81 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~  160 (212)
                      +|+.+||+||+.|+...+   ..+..+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+
T Consensus        94 l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s  170 (372)
T 1v43_A           94 VWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLS  170 (372)
T ss_dssp             ---CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred             cCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence            999999999999864432   23455566789999999999999999999999999999999999999999999999999


Q ss_pred             -CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250         161 -VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       161 -lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~  211 (212)
                       ||+..+.+++++|++++++ +     +|||.+++... +  .+|++|+++..|+++++.+
T Consensus       171 ~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~  231 (372)
T 1v43_A          171 NLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL  231 (372)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence             9999999999999999765 2     37999988764 3  4789999999999999864

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=100.00  E-value=3.4e-54  Score=370.97  Aligned_cols=203  Identities=25%  Similarity=0.311  Sum_probs=180.5

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHD   79 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~   79 (212)
                      ++++++.|+++ +|+++||++++|++++|+||||||||||||+|+|++.| ++|+|.++|+++... ..++.+|||||++
T Consensus         4 ~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~   81 (348)
T 3d31_A            4 IESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP-DSGRILLDGKDVTDLSPEKHDIAFVYQNY   81 (348)
T ss_dssp             EEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCC-SEEEEEETTEECTTSCHHHHTCEEECTTC
T ss_pred             EEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCC-CCcEEEECCEECCCCchhhCcEEEEecCc
Confidence            46899999988 99999999999999999999999999999999999999 699999999998542 3456799999999


Q ss_pred             CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCC
Q psy8250          80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDL  159 (212)
Q Consensus        80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt  159 (212)
                      .+|+.+||+||+.|+...+..   +..   +++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus        82 ~l~~~ltv~enl~~~~~~~~~---~~~---~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~  155 (348)
T 3d31_A           82 SLFPHMNVKKNLEFGMRMKKI---KDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPL  155 (348)
T ss_dssp             CCCTTSCHHHHHHHHHHHHCC---CCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSS
T ss_pred             ccCCCCCHHHHHHHHHHHcCC---CHH---HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence            999999999999997654321   111   67889999999999999999999999999999999999999999999999


Q ss_pred             C-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250         160 T-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       160 ~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      + ||+..+.+++++|++++++ +     +|||.+++... +  .+|++|+++..|+++++.+
T Consensus       156 s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~  217 (348)
T 3d31_A          156 SALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFE  217 (348)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHS
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            9 9999999999999999765 2     37999988764 3  4789999999999999864

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=1.1e-53  Score=351.36  Aligned_cols=205  Identities=19%  Similarity=0.267  Sum_probs=176.4

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccc----ccceEEEEc
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL----MVKVSGFVP   76 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~----~~~~i~~v~   76 (212)
                      ++++++.|+++.+|++|||+|++|++++|+||||||||||+|+|+|+++| ++|+|.++|+++....    .++.++|+|
T Consensus         9 ~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~~i~~v~   87 (240)
T 1ji0_A            9 VQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA-QKGKIIFNGQDITNKPAHVINRMGIALVP   87 (240)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEETTEECTTCCHHHHHHTTEEEEC
T ss_pred             EEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEECCCCCHHHHHhCCEEEEe
Confidence            36899999988899999999999999999999999999999999999999 6999999999985421    234599999


Q ss_pred             CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcC-CccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEe
Q psy8250          77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELG-LLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVP  155 (212)
Q Consensus        77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-l~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llil  155 (212)
                      |++.+++.+||+||+.++....    .......+.+.++++.++ +.+..++++.+|||||||||+|||||+.+|++|||
T Consensus        88 q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllL  163 (240)
T 1ji0_A           88 EGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMM  163 (240)
T ss_dssp             SSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             cCCccCCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            9999999999999998853211    112234556788999995 98889999999999999999999999999999999


Q ss_pred             cCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         156 QHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       156 DEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      ||||+ ||+.++..++++|+++++++     .|||++.+... +  .+|++|++++.|+++++.
T Consensus       164 DEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  227 (240)
T 1ji0_A          164 DEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELL  227 (240)
T ss_dssp             ECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence            99999 99999999999999997543     37999887664 3  478899999999888764

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=100.00  E-value=1.2e-54  Score=360.39  Aligned_cols=207  Identities=18%  Similarity=0.206  Sum_probs=177.8

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc----cccceEEEEc
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN----LMVKVSGFVP   76 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~----~~~~~i~~v~   76 (212)
                      ++++++.|+++.+|+||||+|++|++++|+||||||||||+|+|+|+++| ++|+|.++|+++...    ..++.++|+|
T Consensus        10 i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~~i~~v~   88 (257)
T 1g6h_A           10 TENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA-DEGRVYFENKDITNKEPAELYHYGIVRTF   88 (257)
T ss_dssp             EEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEETTEECTTCCHHHHHHHTEEECC
T ss_pred             EeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEECCCCCHHHHHhCCEEEEc
Confidence            46899999988999999999999999999999999999999999999999 699999999998542    1345699999


Q ss_pred             CCCCCCCCCCHHHHHHHHHhh-hccc---------CCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHH
Q psy8250          77 QHDLTVDTLTVHEHMTLMARL-KMDR---------NLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQT  146 (212)
Q Consensus        77 Q~~~~~~~ltv~e~l~~~~~~-~~~~---------~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al  146 (212)
                      |++.+++.+||+||+.++... ....         .....+..+++.++++.+|+.+..++++.+|||||||||+|||||
T Consensus        89 q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL  168 (257)
T 1g6h_A           89 QTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRAL  168 (257)
T ss_dssp             CCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHH
T ss_pred             cCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHH
Confidence            999999999999999875432 1000         012234456788999999999999999999999999999999999


Q ss_pred             hhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchh
Q psy8250         147 IIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADE  208 (212)
Q Consensus       147 ~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~  208 (212)
                      +.+|++|||||||+ ||+.++..++++|+++++++     .+||++.+... +  .+|++|++++.|++++
T Consensus       169 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  239 (257)
T 1g6h_A          169 MTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE  239 (257)
T ss_dssp             HTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred             HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence            99999999999999 99999999999999997653     27999877653 3  4788999999998888

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=100.00  E-value=2.8e-53  Score=348.88  Aligned_cols=201  Identities=25%  Similarity=0.320  Sum_probs=174.7

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHD   79 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~   79 (212)
                      ++++++.|++  +|+||||++++ ++++|+||||||||||+|+|+|+++| ++|+|.++|+++... ..++.+||+||++
T Consensus         4 ~~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~i~~v~q~~   79 (240)
T 2onk_A            4 KVRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKP-DRGEVRLNGADITPLPPERRGIGFVPQDY   79 (240)
T ss_dssp             EEEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCC-SEEEEEETTEECTTSCTTTSCCBCCCSSC
T ss_pred             EEEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEECCcCchhhCcEEEEcCCC
Confidence            4689999976  59999999999 99999999999999999999999999 699999999998532 3456799999999


Q ss_pred             CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCC
Q psy8250          80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDL  159 (212)
Q Consensus        80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt  159 (212)
                      .+++.+||+||+.++...+     ......+++.++++.+|+.+..++++.+||||||||++|||||+.+|++|||||||
T Consensus        80 ~l~~~ltv~enl~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt  154 (240)
T 2onk_A           80 ALFPHLSVYRNIAYGLRNV-----ERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPL  154 (240)
T ss_dssp             CCCTTSCHHHHHHTTCTTS-----CHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTT
T ss_pred             ccCCCCcHHHHHHHHHHHc-----CCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence            9999999999998754321     11123567889999999999999999999999999999999999999999999999


Q ss_pred             C-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         160 T-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       160 ~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      + ||+.+++.++++|++++++ +     .|||++.+... +  .+|++|++++.|+++++.
T Consensus       155 s~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  215 (240)
T 2onk_A          155 SAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELF  215 (240)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            9 9999999999999999654 3     37999988664 3  478899999999998874

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=100.00  E-value=6.5e-53  Score=351.53  Aligned_cols=205  Identities=20%  Similarity=0.227  Sum_probs=174.8

Q ss_pred             CcccccccC--C---cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEE
Q psy8250           1 METFHPLFG--D---TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFV   75 (212)
Q Consensus         1 ~~~l~~~~~--~---~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v   75 (212)
                      ++++++.|+  +   +.+|+||||+|++|++++|+||||||||||+|+|+|+++| ++|+|.++|+++....+++.+||+
T Consensus         5 ~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p-~~G~I~~~g~~~~~~~~~~~i~~v   83 (266)
T 2yz2_A            5 VVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP-TSGDVLYDGERKKGYEIRRNIGIA   83 (266)
T ss_dssp             EEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEETTEECCHHHHGGGEEEE
T ss_pred             EEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-CCcEEEECCEECchHHhhhhEEEE
Confidence            468999997  4   5799999999999999999999999999999999999998 699999999988543445679999


Q ss_pred             cCCC-CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc--cccCCCCCCCChHHHHHHHHHHHHhhCCCe
Q psy8250          76 PQHD-LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL--KCKNSVLNVLSGGERKRVALAVQTIIVQSG  152 (212)
Q Consensus        76 ~Q~~-~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LSgGqrqRv~lA~al~~~p~l  152 (212)
                      ||++ ..++.+||+||+.++.... .   +..+..+++.++++.+|+.  +..++++.+|||||||||+|||||+.+|++
T Consensus        84 ~q~~~~~~~~~tv~enl~~~~~~~-~---~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~l  159 (266)
T 2yz2_A           84 FQYPEDQFFAERVFDEVAFAVKNF-Y---PDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDI  159 (266)
T ss_dssp             CSSGGGGCCCSSHHHHHHHTTTTT-C---TTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred             eccchhhcCCCcHHHHHHHHHHhc-C---CHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence            9996 4567789999999854321 1   1112245678999999999  899999999999999999999999999999


Q ss_pred             EEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         153 FVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       153 lilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      |||||||+ ||+.++..++++|+++++++     .+||++.+... +  .+|++|+++..|+++++.
T Consensus       160 llLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  226 (266)
T 2yz2_A          160 LILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFL  226 (266)
T ss_dssp             EEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHH
T ss_pred             EEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            99999999 99999999999999997653     37998877653 3  478899999999888764

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=100.00  E-value=1.4e-52  Score=346.62  Aligned_cols=207  Identities=19%  Similarity=0.193  Sum_probs=169.7

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcC--CCCCCceEEEECCEeCCccc---c-cceEEE
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQR--IQGDVDGQILLNGLEVEKNL---M-VKVSGF   74 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~--~~p~~~G~I~~~g~~~~~~~---~-~~~i~~   74 (212)
                      ++++++.|+++.+|+||||+|++|++++|+||||||||||+|+|+|+  +.| ++|+|.++|+++....   . +..++|
T Consensus         6 ~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p-~~G~I~~~g~~~~~~~~~~~~~~~i~~   84 (250)
T 2d2e_A            6 IRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV-ERGEILLDGENILELSPDERARKGLFL   84 (250)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEE-EEEEEEETTEECTTSCHHHHHHTTBCC
T ss_pred             EEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-CceEEEECCEECCCCCHHHHHhCcEEE
Confidence            36899999988899999999999999999999999999999999998  677 6999999999985421   1 345899


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCC-ccccCCCCCC-CChHHHHHHHHHHHHhhCCCe
Q psy8250          75 VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGL-LKCKNSVLNV-LSGGERKRVALAVQTIIVQSG  152 (212)
Q Consensus        75 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-~~~~~~~~~~-LSgGqrqRv~lA~al~~~p~l  152 (212)
                      +||++.+++.+|++||+.++............+..+++.++++.+|+ .+..++++.+ |||||||||+|||||+.+|++
T Consensus        85 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~l  164 (250)
T 2d2e_A           85 AFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTY  164 (250)
T ss_dssp             CCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSE
T ss_pred             eccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCE
Confidence            99999999999999999886532111111233445678899999999 5788999999 999999999999999999999


Q ss_pred             EEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH--H--HHHHhcCeeecCCchh
Q psy8250         153 FVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV--D--ALLKELGLLKCRPADE  208 (212)
Q Consensus       153 lilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~--~--~~l~~g~~~~~~~~~~  208 (212)
                      |||||||+ ||+.++..++++|+++++++     .|||++.+...  +  .+|++|++++.|+++.
T Consensus       165 llLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~  230 (250)
T 2d2e_A          165 AVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPEL  230 (250)
T ss_dssp             EEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred             EEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHH
Confidence            99999999 99999999999999986543     37998877653  3  3688999999998773

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=100.00  E-value=1.5e-52  Score=350.15  Aligned_cols=208  Identities=19%  Similarity=0.194  Sum_probs=171.1

Q ss_pred             CcccccccCC---cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEE
Q psy8250           1 METFHPLFGD---TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGF   74 (212)
Q Consensus         1 ~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~   74 (212)
                      ++++++.|++   +.+|++|||+|++|++++|+||||||||||+|+|+|++.| ++|+|.++|.++...   .+++.++|
T Consensus        19 ~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p-~~G~I~~~g~~i~~~~~~~~~~~i~~   97 (271)
T 2ixe_A           19 FQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP-TGGKVLLDGEPLVQYDHHYLHTQVAA   97 (271)
T ss_dssp             EEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEETTEEGGGBCHHHHHHHEEE
T ss_pred             EEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCCEEEECCEEcccCCHHHHhccEEE
Confidence            4689999976   6799999999999999999999999999999999999999 699999999988532   24567999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHhhhcc-cCCCHHHHHHHHHHHHHHc--CCccccCCCCCCCChHHHHHHHHHHHHhhCCC
Q psy8250          75 VPQHDLTVDTLTVHEHMTLMARLKMD-RNLHHVERARTVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQTIIVQS  151 (212)
Q Consensus        75 v~Q~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~  151 (212)
                      |||++.+++ .||+||+.++...... ...........+.++++.+  |+.+..++++.+|||||||||+|||||+.+|+
T Consensus        98 v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~  176 (271)
T 2ixe_A           98 VGQEPLLFG-RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPR  176 (271)
T ss_dssp             ECSSCCCCS-SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCS
T ss_pred             EecCCcccc-ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCC
Confidence            999998887 5999999875321100 0000011223356778888  78888899999999999999999999999999


Q ss_pred             eEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHHH--HHHHhcCeeecCCchhhh
Q psy8250         152 GFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTVD--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       152 llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~  210 (212)
                      +|||||||+ ||+.++..++++|++++.+ .     ++|+++.+..++  .+|++|++++.|+++++.
T Consensus       177 lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~  244 (271)
T 2ixe_A          177 LLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLM  244 (271)
T ss_dssp             EEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHH
T ss_pred             EEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            999999999 9999999999999998643 2     379998875433  478899999999988874

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=100.00  E-value=3.1e-51  Score=339.08  Aligned_cols=198  Identities=18%  Similarity=0.234  Sum_probs=169.7

Q ss_pred             CcccccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCC
Q psy8250           1 METFHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHD   79 (212)
Q Consensus         1 ~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~   79 (212)
                      ++++++.|+ ++.+|+++||+|++|++++|+||||||||||+|+|+|+++| ++|+|.          +++.++|+||++
T Consensus         7 i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~I~----------~~~~i~~v~q~~   75 (253)
T 2nq2_C            7 VENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP-IQGKIE----------VYQSIGFVPQFF   75 (253)
T ss_dssp             EEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCC-SEEEEE----------ECSCEEEECSCC
T ss_pred             EeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEE----------EeccEEEEcCCC
Confidence            368999998 88899999999999999999999999999999999999999 699998          235699999999


Q ss_pred             CCCCCCCHHHHHHHHHhhhcc-cCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250          80 LTVDTLTVHEHMTLMARLKMD-RNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD  158 (212)
Q Consensus        80 ~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP  158 (212)
                      .+++.+||+||+.++...... .........+++.++++.+|+.+..++++.+|||||||||+|||||+.+|++||||||
T Consensus        76 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEP  155 (253)
T 2nq2_C           76 SSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEP  155 (253)
T ss_dssp             CCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSS
T ss_pred             ccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            999899999999885422100 0011233456788999999999999999999999999999999999999999999999


Q ss_pred             CC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         159 LT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       159 t~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      |+ ||+.++..++++|++++++ +     .+||++.+... +  .+|++|+ ++.|+++++.
T Consensus       156 ts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~  216 (253)
T 2nq2_C          156 TSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNIL  216 (253)
T ss_dssp             STTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred             cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence            99 9999999999999999765 3     37999988654 3  4678999 8889888763

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=100.00  E-value=2e-52  Score=350.67  Aligned_cols=209  Identities=19%  Similarity=0.181  Sum_probs=172.9

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCC--c---ccccceEEEE
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE--K---NLMVKVSGFV   75 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~--~---~~~~~~i~~v   75 (212)
                      ++++++.|+++.+|+||||+|++|++++|+||||||||||+|+|+|+++| ++|+|.++|+++.  .   ..+++.++|+
T Consensus        24 ~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p-~~G~I~~~g~~~~~~~~~~~~~~~~i~~v  102 (279)
T 2ihy_A           24 LDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPA-TSGTVNLFGKMPGKVGYSAETVRQHIGFV  102 (279)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEETTBCCC---CCHHHHHTTEEEE
T ss_pred             EEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-CCeEEEECCEEcccccCCHHHHcCcEEEE
Confidence            46899999988899999999999999999999999999999999999999 6999999999875  2   2345679999


Q ss_pred             cCCCCCC--CCCCHHHHHHHHHhhh-cccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCe
Q psy8250          76 PQHDLTV--DTLTVHEHMTLMARLK-MDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSG  152 (212)
Q Consensus        76 ~Q~~~~~--~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~l  152 (212)
                      ||++.++  +.+||+||+.++.... ........+..+++.++++.+|+.+..++++.+|||||||||+|||||+.+|++
T Consensus       103 ~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~l  182 (279)
T 2ihy_A          103 SHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQV  182 (279)
T ss_dssp             CHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSE
T ss_pred             EcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCE
Confidence            9987543  3569999998742110 000111223456788999999999999999999999999999999999999999


Q ss_pred             EEecCCCC-CChhhHHHHHHHHHHHHhhc--C-----cchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         153 FVPQHDLT-VDTLTVHEHMTLMARLKMDR--N-----LHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       153 lilDEPt~-lD~~~~~~~~~~l~~l~~~~--~-----~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      |||||||+ ||+.+++.++++|+++++++  .     |||++.+... +  .+|++|++++.|+++++.
T Consensus       183 LlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  251 (279)
T 2ihy_A          183 LILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDIL  251 (279)
T ss_dssp             EEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHHC
T ss_pred             EEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence            99999999 99999999999999997542  2     6998877543 2  478899999999888764

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=100.00  E-value=3.9e-52  Score=352.65  Aligned_cols=199  Identities=22%  Similarity=0.277  Sum_probs=166.6

Q ss_pred             CcccccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEEEc
Q psy8250           1 METFHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGFVP   76 (212)
Q Consensus         1 ~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~v~   76 (212)
                      ++++++.|+ +..+|+||||+|++|+++||+||||||||||+++|+|++.| ++|+|.++|.++...   .+++.++|||
T Consensus        56 ~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p-~~G~I~i~G~~i~~~~~~~~r~~i~~v~  134 (306)
T 3nh6_A           56 FENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDI-SSGCIRIDGQDISQVTQASLRSHIGVVP  134 (306)
T ss_dssp             EEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCC-SEEEEEETTEETTSBCHHHHHHTEEEEC
T ss_pred             EEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC-CCcEEEECCEEcccCCHHHHhcceEEEe
Confidence            368899995 57799999999999999999999999999999999999999 699999999998643   3567899999


Q ss_pred             CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHc-----------CCccccCCCCCCCChHHHHHHHHHHH
Q psy8250          77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKEL-----------GLLKCKNSVLNVLSGGERKRVALAVQ  145 (212)
Q Consensus        77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LSgGqrqRv~lA~a  145 (212)
                      |++.+|+ .||+||+.++....     ..    ..+.++++.+           |+.....+++.+|||||||||+||||
T Consensus       135 Q~~~lf~-~Tv~eNi~~~~~~~-----~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARA  204 (306)
T 3nh6_A          135 QDTVLFN-DTIADNIRYGRVTA-----GN----DEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIART  204 (306)
T ss_dssp             SSCCCCS-EEHHHHHHTTSTTC-----CH----HHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHH
T ss_pred             cCCccCc-ccHHHHHHhhcccC-----CH----HHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHH
Confidence            9998885 59999998753211     11    1233333333           44555667778999999999999999


Q ss_pred             HhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhh
Q psy8250         146 TIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       146 l~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~  210 (212)
                      |+.+|++|||||||+ ||+.+...+++.|.++....    ++|+++.+..++  .+|++|++++.|+++++.
T Consensus       205 L~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~aD~i~vl~~G~iv~~G~~~el~  276 (306)
T 3nh6_A          205 ILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALL  276 (306)
T ss_dssp             HHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHTCSEEEEEETTEEEEEECHHHHH
T ss_pred             HHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHH
Confidence            999999999999999 99999999999999987643    379999887654  478899999999999874

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=100.00  E-value=5.3e-51  Score=329.88  Aligned_cols=180  Identities=21%  Similarity=0.310  Sum_probs=159.3

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL   80 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~   80 (212)
                      ++++++.|++ .+|++|||+|++|++++|+||||||||||+|+|+|+++| ++|+|.++|.++.  ..++.++|+||++.
T Consensus        13 ~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p-~~G~I~~~g~~~~--~~~~~i~~v~q~~~   88 (214)
T 1sgw_A           13 IRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP-LKGEIIYNGVPIT--KVKGKIFFLPEEII   88 (214)
T ss_dssp             EEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEETTEEGG--GGGGGEEEECSSCC
T ss_pred             EEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCeEEEECCEEhh--hhcCcEEEEeCCCc
Confidence            4689999988 999999999999999999999999999999999999998 6999999999885  35677999999999


Q ss_pred             CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC
Q psy8250          81 TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT  160 (212)
Q Consensus        81 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~  160 (212)
                      +++.+||+||+.++...+.. .   .+ .+++.++++.+|+.+. ++++.+||||||||++|||||+.+|++|||||||+
T Consensus        89 ~~~~~tv~enl~~~~~~~~~-~---~~-~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts  162 (214)
T 1sgw_A           89 VPRKISVEDYLKAVASLYGV-K---VN-KNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVV  162 (214)
T ss_dssp             CCTTSBHHHHHHHHHHHTTC-C---CC-HHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTT
T ss_pred             CCCCCCHHHHHHHHHHhcCC-c---hH-HHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCc
Confidence            99999999999987543221 1   11 4567889999999988 99999999999999999999999999999999999


Q ss_pred             -CChhhHHHHHHHHHHHHhhc-----CcchHHHHHH
Q psy8250         161 -VDTLTVHEHMTLMARLKMDR-----NLHHVERART  190 (212)
Q Consensus       161 -lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~  190 (212)
                       ||+.++..++++|++++++.     .+|+++.+..
T Consensus       163 ~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~  198 (214)
T 1sgw_A          163 AIDEDSKHKVLKSILEILKEKGIVIISSREELSYCD  198 (214)
T ss_dssp             TSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSS
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence             99999999999999987543     3799887654

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=100.00  E-value=3.4e-51  Score=341.33  Aligned_cols=209  Identities=17%  Similarity=0.166  Sum_probs=174.2

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCC--CCCCceEEEECCEeCCcc---cc-cceEEE
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRI--QGDVDGQILLNGLEVEKN---LM-VKVSGF   74 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~--~p~~~G~I~~~g~~~~~~---~~-~~~i~~   74 (212)
                      ++++++.|+++.+|+||||+|++|++++|+||||||||||+|+|+|++  .| ++|+|.++|+++...   .. ++.++|
T Consensus        23 ~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p-~~G~I~~~g~~i~~~~~~~~~~~~i~~  101 (267)
T 2zu0_C           23 IKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEV-TGGTVEFKGKDLLALSPEDRAGEGIFM  101 (267)
T ss_dssp             EEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEE-EEEEEEETTEEGGGSCHHHHHHHTEEE
T ss_pred             EEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-CCeEEEECCEECCcCCHHHHhhCCEEE
Confidence            468999999889999999999999999999999999999999999984  56 699999999988532   12 235899


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHh-hh---cccCCCHHHHHHHHHHHHHHcCCc-cccCCCCC-CCChHHHHHHHHHHHHhh
Q psy8250          75 VPQHDLTVDTLTVHEHMTLMAR-LK---MDRNLHHVERARTVDALLKELGLL-KCKNSVLN-VLSGGERKRVALAVQTII  148 (212)
Q Consensus        75 v~Q~~~~~~~ltv~e~l~~~~~-~~---~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~-~LSgGqrqRv~lA~al~~  148 (212)
                      +||++.+++.+|+.+|+.+... ..   .....+..+..+++.++++.+|+. ...++++. +|||||||||+|||||+.
T Consensus       102 v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~  181 (267)
T 2zu0_C          102 AFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVL  181 (267)
T ss_dssp             ECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHH
T ss_pred             EccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHh
Confidence            9999999999999999987542 11   111123344456788999999996 57888887 599999999999999999


Q ss_pred             CCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHH--HH--HHHHhcCeeecCCchhhh
Q psy8250         149 VQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERART--VD--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       149 ~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~--~~--~~l~~g~~~~~~~~~~~~  210 (212)
                      +|++|||||||+ ||+.++..++++|++++++.     .|||++.+..  ++  .+|++|++++.|+++++.
T Consensus       182 ~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  253 (267)
T 2zu0_C          182 EPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVK  253 (267)
T ss_dssp             CCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTTHHH
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHHHHh
Confidence            999999999999 99999999999999986543     3799887754  23  468899999999988763

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=100.00  E-value=1.3e-51  Score=340.36  Aligned_cols=199  Identities=19%  Similarity=0.272  Sum_probs=165.2

Q ss_pred             Cccccccc--CCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEEE
Q psy8250           1 METFHPLF--GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGFV   75 (212)
Q Consensus         1 ~~~l~~~~--~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~v   75 (212)
                      +++++++|  +++.+|++|||+|++|++++|+||||||||||+|+|+|+++| ++|+|.++|.++...   .+++.++|+
T Consensus        10 ~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~I~i~g~~~~~~~~~~~~~~i~~v   88 (247)
T 2ff7_A           10 FRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP-ENGQVLIDGHDLALADPNWLRRQVGVV   88 (247)
T ss_dssp             EEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEETTEETTTSCHHHHHHHEEEE
T ss_pred             EEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEECCEEhhhCCHHHHHhcEEEE
Confidence            46899999  467899999999999999999999999999999999999999 699999999998542   245679999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcccc-----------CCCCCCCChHHHHHHHHHH
Q psy8250          76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCK-----------NSVLNVLSGGERKRVALAV  144 (212)
Q Consensus        76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGqrqRv~lA~  144 (212)
                      ||++.+++ .||+||+.++..     ...    ..++.++++.+++.+..           ++++.+|||||||||+|||
T Consensus        89 ~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAr  158 (247)
T 2ff7_A           89 LQDNVLLN-RSIIDNISLANP-----GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIAR  158 (247)
T ss_dssp             CSSCCCTT-SBHHHHHTTTCT-----TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHH
T ss_pred             eCCCcccc-ccHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHH
Confidence            99998886 599999987421     111    23455666777665443           4556899999999999999


Q ss_pred             HHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhh
Q psy8250         145 QTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       145 al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~  210 (212)
                      ||+.+|++|||||||+ ||+.++..++++|+++++..    .+|+++.+..++  .+|++|++++.|+++++.
T Consensus       159 aL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~  231 (247)
T 2ff7_A          159 ALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL  231 (247)
T ss_dssp             HHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHH
T ss_pred             HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            9999999999999999 99999999999999995422    379988765433  478899999999988874

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=100.00  E-value=1.3e-50  Score=334.68  Aligned_cols=195  Identities=23%  Similarity=0.299  Sum_probs=169.0

Q ss_pred             cccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEcCC
Q psy8250           2 ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQH   78 (212)
Q Consensus         2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~Q~   78 (212)
                      +++++.    .+|+++||++++|++++|+||||||||||+|+|+|+++| + |+|.++|+++..   ..+++.++|+||+
T Consensus         8 ~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p-~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~   81 (249)
T 2qi9_C            8 QDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG-K-GSIQFAGQPLEAWSATKLALHRAYLSQQ   81 (249)
T ss_dssp             EEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC-E-EEEEETTEEGGGSCHHHHHHHEEEECSC
T ss_pred             EceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-C-eEEEECCEECCcCCHHHHhceEEEECCC
Confidence            456665    689999999999999999999999999999999999998 7 999999998743   2345679999999


Q ss_pred             CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCC-------
Q psy8250          79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQS-------  151 (212)
Q Consensus        79 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~-------  151 (212)
                      +.+++.+||+||+.++.. .   ...    .+++.++++.+|+.+..++++.+||||||||++|||||+.+|+       
T Consensus        82 ~~~~~~~tv~e~l~~~~~-~---~~~----~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~  153 (249)
T 2qi9_C           82 QTPPFATPVWHYLTLHQH-D---KTR----TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQ  153 (249)
T ss_dssp             CCCCTTCBHHHHHHTTCS-S---TTC----HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCC
T ss_pred             CccCCCCcHHHHHHHhhc-c---CCc----HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCe
Confidence            999999999999987421 1   111    4567899999999999999999999999999999999999999       


Q ss_pred             eEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250         152 GFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       152 llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~  210 (212)
                      +|||||||+ ||+.++..++++|+++++++     .+||++.+... +  .+|++|++++.|+++++.
T Consensus       154 lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  221 (249)
T 2qi9_C          154 LLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL  221 (249)
T ss_dssp             EEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHS
T ss_pred             EEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            999999999 99999999999999997653     37999988654 3  468899999999888774

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=100.00  E-value=3.6e-51  Score=336.87  Aligned_cols=200  Identities=19%  Similarity=0.220  Sum_probs=167.8

Q ss_pred             Cccccccc-CCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEc
Q psy8250           1 METFHPLF-GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVP   76 (212)
Q Consensus         1 ~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~   76 (212)
                      ++++++.| +++.+|++|||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++..   ..+++.++|+|
T Consensus         4 ~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~i~~v~   82 (243)
T 1mv5_A            4 ARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP-TAGEITIDGQPIDNISLENWRSQIGFVS   82 (243)
T ss_dssp             EEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC-SBSCEEETTEESTTTSCSCCTTTCCEEC
T ss_pred             EEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEECCEEhhhCCHHHHHhhEEEEc
Confidence            46899999 677899999999999999999999999999999999999998 69999999999853   23466799999


Q ss_pred             CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccC-----------CCCCCCChHHHHHHHHHHH
Q psy8250          77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKN-----------SVLNVLSGGERKRVALAVQ  145 (212)
Q Consensus        77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGqrqRv~lA~a  145 (212)
                      |++.+++ .||+||+.++..    ....    ...+.++++.+++.+..+           +++.+|||||||||+||||
T Consensus        83 q~~~l~~-~tv~enl~~~~~----~~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAra  153 (243)
T 1mv5_A           83 QDSAIMA-GTIRENLTYGLE----GDYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARA  153 (243)
T ss_dssp             CSSCCCC-EEHHHHTTSCTT----SCSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHH
T ss_pred             CCCcccc-ccHHHHHhhhcc----CCCC----HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHH
Confidence            9998887 599999987421    1111    234677888888876554           4467999999999999999


Q ss_pred             HhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhh
Q psy8250         146 TIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       146 l~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~  210 (212)
                      |+.+|++|||||||+ ||+.++..++++|+++++..    .+|+++.+..++  .+|++|++++.|+++++.
T Consensus       154 l~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  225 (243)
T 1mv5_A          154 FLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELV  225 (243)
T ss_dssp             HHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHH
T ss_pred             HhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            999999999999999 99999999999999987322    379998775433  368899999999988874

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=100.00  E-value=2.6e-50  Score=335.16  Aligned_cols=199  Identities=23%  Similarity=0.210  Sum_probs=171.2

Q ss_pred             CcccccccCC----cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEE-EE
Q psy8250           1 METFHPLFGD----TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSG-FV   75 (212)
Q Consensus         1 ~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~-~v   75 (212)
                      ++++++.|++    +.+|+++||+++ |++++|+||||||||||+|+|+|++ | ++|+|.++|.++.....++.++ |+
T Consensus         4 ~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p-~~G~I~~~g~~~~~~~~~~~i~~~v   80 (263)
T 2pjz_A            4 LKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-P-YSGNIFINGMEVRKIRNYIRYSTNL   80 (263)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-C-CEEEEEETTEEGGGCSCCTTEEECC
T ss_pred             EEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-C-CCcEEEECCEECcchHHhhheEEEe
Confidence            4689999987    789999999999 9999999999999999999999999 9 6999999999874321255799 99


Q ss_pred             cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHHHhhCCCeEE
Q psy8250          76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQTIIVQSGFV  154 (212)
Q Consensus        76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~al~~~p~lli  154 (212)
                      ||++.+  .+|++||+.++...+   ..    ..+++.++++.+++. +..++++.+||||||||++|||||+.+|++||
T Consensus        81 ~Q~~~l--~~tv~enl~~~~~~~---~~----~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lll  151 (263)
T 2pjz_A           81 PEAYEI--GVTVNDIVYLYEELK---GL----DRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVG  151 (263)
T ss_dssp             GGGSCT--TSBHHHHHHHHHHHT---CC----CHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred             CCCCcc--CCcHHHHHHHhhhhc---ch----HHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence            999877  789999999865432   11    134678899999998 89999999999999999999999999999999


Q ss_pred             ecCCCC-CChhhHHHHHHHHHHHHhh--cCcchHHHHHH-HH---HHHHhcCeeecCCchhhhc
Q psy8250         155 PQHDLT-VDTLTVHEHMTLMARLKMD--RNLHHVERART-VD---ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       155 lDEPt~-lD~~~~~~~~~~l~~l~~~--~~~h~~~~~~~-~~---~~l~~g~~~~~~~~~~~~~  211 (212)
                      |||||+ ||+.++..++++|+++++.  ..|||++.+.. ++   .+|++|++++.|+++++.+
T Consensus       152 LDEPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~  215 (263)
T 2pjz_A          152 LDEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLE  215 (263)
T ss_dssp             EECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred             EECCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence            999999 9999999999999988641  13799887654 34   3688999999999988753

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=100.00  E-value=3.5e-50  Score=350.60  Aligned_cols=198  Identities=18%  Similarity=0.246  Sum_probs=169.9

Q ss_pred             Cccccccc--CCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEEE
Q psy8250           1 METFHPLF--GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGFV   75 (212)
Q Consensus         1 ~~~l~~~~--~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~v   75 (212)
                      +++++++|  ++..+|++|||+|++||+++|+||||||||||||+|+|++.  ++|+|+++|+++...   .+++.++||
T Consensus        22 ~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--~~G~I~i~G~~i~~~~~~~~rr~ig~v   99 (390)
T 3gd7_A           22 VKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN--TEGEIQIDGVSWDSITLEQWRKAFGVI   99 (390)
T ss_dssp             EEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE--EEEEEEESSCBTTSSCHHHHHHTEEEE
T ss_pred             EEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCeEEEECCEECCcCChHHHhCCEEEE
Confidence            46899999  66789999999999999999999999999999999999885  499999999998643   245779999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCC-----------CChHHHHHHHHHH
Q psy8250          76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV-----------LSGGERKRVALAV  144 (212)
Q Consensus        76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----------LSgGqrqRv~lA~  144 (212)
                      ||++.+|+ +||+||+.+..      ..    ..+++.++++.+++.+..++++.+           |||||||||+|||
T Consensus       100 ~Q~~~lf~-~tv~enl~~~~------~~----~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalAR  168 (390)
T 3gd7_A          100 PQKVFIFS-GTFRKNLDPNA------AH----SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLAR  168 (390)
T ss_dssp             SCCCCCCS-EEHHHHHCTTC------CS----CHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHH
T ss_pred             cCCcccCc-cCHHHHhhhcc------cc----CHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHH
Confidence            99999887 59999986421      11    134577899999999999999988           9999999999999


Q ss_pred             HHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250         145 QTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       145 al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      ||+.+|++|||||||+ ||+..+.++.+.|+++....    ++||++.+..++  .+|++|+++..|+++++++
T Consensus       169 AL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~  242 (390)
T 3gd7_A          169 SVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYH  242 (390)
T ss_dssp             HHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHH
T ss_pred             HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            9999999999999999 99999999999998865432    279876554333  4789999999999999865

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=100.00  E-value=2.4e-49  Score=329.05  Aligned_cols=198  Identities=20%  Similarity=0.245  Sum_probs=163.1

Q ss_pred             CcccccccCC---cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEE
Q psy8250           1 METFHPLFGD---TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGF   74 (212)
Q Consensus         1 ~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~   74 (212)
                      ++++++.|++   +.+|++|||+|++|++++|+||||||||||+|+|+|+++|  +|+|.++|.++...   .+++.++|
T Consensus        20 i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~G~I~i~g~~i~~~~~~~~~~~i~~   97 (260)
T 2ghi_A           20 FSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA--EGDIKIGGKNVNKYNRNSIRSIIGI   97 (260)
T ss_dssp             EEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--EEEEEETTEEGGGBCHHHHHTTEEE
T ss_pred             EEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC--CeEEEECCEEhhhcCHHHHhccEEE
Confidence            4689999976   4699999999999999999999999999999999999864  79999999988532   34567999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccc-----------cCCCCCCCChHHHHHHHHH
Q psy8250          75 VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKC-----------KNSVLNVLSGGERKRVALA  143 (212)
Q Consensus        75 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGqrqRv~lA  143 (212)
                      +||++.+++ .||+||+.++..     ...    .+.+.++++.+++.+.           .++++.+|||||||||+||
T Consensus        98 v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lA  167 (260)
T 2ghi_A           98 VPQDTILFN-ETIKYNILYGKL-----DAT----DEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIA  167 (260)
T ss_dssp             ECSSCCCCS-EEHHHHHHTTCT-----TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHH
T ss_pred             EcCCCcccc-cCHHHHHhccCC-----CCC----HHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHH
Confidence            999998886 599999987421     111    2345566777776442           3467889999999999999


Q ss_pred             HHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhh
Q psy8250         144 VQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       144 ~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~  210 (212)
                      |||+.+|++|||||||+ ||+.++..++++|+++++..    .+|+++.+..++  .+|++|++++.|+++++.
T Consensus       168 raL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~  241 (260)
T 2ghi_A          168 RCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLL  241 (260)
T ss_dssp             HHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHH
T ss_pred             HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            99999999999999999 99999999999999986532    379988765433  478899999999988874

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=100.00  E-value=8.4e-49  Score=320.10  Aligned_cols=189  Identities=24%  Similarity=0.307  Sum_probs=152.7

Q ss_pred             CcccccccC--CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCC
Q psy8250           1 METFHPLFG--DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQH   78 (212)
Q Consensus         1 ~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~   78 (212)
                      ++++++.|+  ++.+|++|||+|++|++++|+||||||||||+|+|+|+++| ++|+|.++|          .++|+||+
T Consensus         9 ~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g----------~i~~v~q~   77 (229)
T 2pze_A            9 MENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP-SEGKIKHSG----------RISFCSQF   77 (229)
T ss_dssp             EEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEECS----------CEEEECSS
T ss_pred             EEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC-CccEEEECC----------EEEEEecC
Confidence            368999994  57899999999999999999999999999999999999999 699999998          38999999


Q ss_pred             CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccc-----------cCCCCCCCChHHHHHHHHHHHHh
Q psy8250          79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKC-----------KNSVLNVLSGGERKRVALAVQTI  147 (212)
Q Consensus        79 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGqrqRv~lA~al~  147 (212)
                      +.+++. ||+||+.++..      ...    ....++++.+++.+.           .++++.+||||||||++|||||+
T Consensus        78 ~~~~~~-tv~enl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~  146 (229)
T 2pze_A           78 SWIMPG-TIKENIIFGVS------YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVY  146 (229)
T ss_dssp             CCCCSB-CHHHHHHTTSC------CCH----HHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHH
T ss_pred             CcccCC-CHHHHhhccCC------cCh----HHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHh
Confidence            988875 99999987421      111    112334444444322           33456899999999999999999


Q ss_pred             hCCCeEEecCCCC-CChhhHHHHHHH-HHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250         148 IVQSGFVPQHDLT-VDTLTVHEHMTL-MARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       148 ~~p~llilDEPt~-lD~~~~~~~~~~-l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      .+|++|||||||+ ||+.++..+++. +.+++...    .+|+++.+..++  .+|++|++++.|+++++.+
T Consensus       147 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  218 (229)
T 2pze_A          147 KDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN  218 (229)
T ss_dssp             SCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHT
T ss_pred             cCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            9999999999999 999999999996 45554322    379998775433  3688999999999988753

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=100.00  E-value=1.9e-48  Score=319.57  Aligned_cols=194  Identities=20%  Similarity=0.276  Sum_probs=152.7

Q ss_pred             CcccccccC--CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCC
Q psy8250           1 METFHPLFG--DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQH   78 (212)
Q Consensus         1 ~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~   78 (212)
                      ++++++.|+  ++.+|++|||+|++|++++|+||||||||||+|+|+|+++| ++|+|.++|          .++|+||+
T Consensus         6 ~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~I~~~g----------~i~~v~Q~   74 (237)
T 2cbz_A            6 VRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK-VEGHVAIKG----------SVAYVPQQ   74 (237)
T ss_dssp             EEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEE-EEEEEEECS----------CEEEECSS
T ss_pred             EEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECC----------EEEEEcCC
Confidence            468999997  57899999999999999999999999999999999999998 699999998          28999999


Q ss_pred             CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-----cccCCCCCCCChHHHHHHHHHHHHhhCCCeE
Q psy8250          79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-----KCKNSVLNVLSGGERKRVALAVQTIIVQSGF  153 (212)
Q Consensus        79 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----~~~~~~~~~LSgGqrqRv~lA~al~~~p~ll  153 (212)
                      +.+ +.+||+||+.++....    ...........++++.+++.     ...++++.+|||||||||+|||||+.+|++|
T Consensus        75 ~~~-~~~tv~enl~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ll  149 (237)
T 2cbz_A           75 AWI-QNDSLRENILFGCQLE----EPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIY  149 (237)
T ss_dssp             CCC-CSEEHHHHHHTTSCCC----TTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred             CcC-CCcCHHHHhhCccccC----HHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence            865 5789999998743211    01111111111123334332     2357889999999999999999999999999


Q ss_pred             EecCCCC-CChhhHHHHHHHHH---HHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhh
Q psy8250         154 VPQHDLT-VDTLTVHEHMTLMA---RLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       154 ilDEPt~-lD~~~~~~~~~~l~---~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~  210 (212)
                      ||||||+ ||+.++..+++.|.   +++...    .+|+++.+..++  .+|++|++++.|+++++.
T Consensus       150 lLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  216 (237)
T 2cbz_A          150 LFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELL  216 (237)
T ss_dssp             EEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHH
T ss_pred             EEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHh
Confidence            9999999 99999999999984   343221    379987764333  468899999999988874

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=100.00  E-value=3.4e-47  Score=347.64  Aligned_cols=201  Identities=17%  Similarity=0.230  Sum_probs=167.7

Q ss_pred             CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250           1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV   75 (212)
Q Consensus         1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v   75 (212)
                      +++++++|++  +.+|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++..   ..+++.++||
T Consensus       344 ~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p-~~G~i~~~g~~~~~~~~~~~~~~i~~v  422 (582)
T 3b5x_A          344 VKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDV-DSGSICLDGHDVRDYKLTNLRRHFALV  422 (582)
T ss_pred             EEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCCEEEECCEEhhhCCHHHHhcCeEEE
Confidence            3689999974  6799999999999999999999999999999999999999 69999999999853   2456789999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccc-----------cCCCCCCCChHHHHHHHHHH
Q psy8250          76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKC-----------KNSVLNVLSGGERKRVALAV  144 (212)
Q Consensus        76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGqrqRv~lA~  144 (212)
                      ||++.+|+. |++||+.++..    ....    .+++.++++.+++.+.           .+++..+||||||||++|||
T Consensus       423 ~Q~~~l~~~-tv~eni~~~~~----~~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAr  493 (582)
T 3b5x_A          423 SQNVHLFND-TIANNIAYAAE----GEYT----REQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIAR  493 (582)
T ss_pred             cCCCccccc-cHHHHHhccCC----CCCC----HHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHH
Confidence            999998875 99999987531    1111    2345666777766544           34456899999999999999


Q ss_pred             HHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250         145 QTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       145 al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      ||+.+|+++||||||+ ||+.+++.+.+.|+++.+..    .+|+++.+..++  .+|++|++++.|+++++.+
T Consensus       494 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~  567 (582)
T 3b5x_A          494 ALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLA  567 (582)
T ss_pred             HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            9999999999999999 99999999999999986532    379998876544  4788999999999998753

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=5e-48  Score=353.44  Aligned_cols=204  Identities=19%  Similarity=0.222  Sum_probs=166.7

Q ss_pred             CcccccccC--CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEEE
Q psy8250           1 METFHPLFG--DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGFV   75 (212)
Q Consensus         1 ~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~v   75 (212)
                      +++++++|+  +..+|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++...   .+++.++||
T Consensus       344 ~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~-~~G~i~i~g~~i~~~~~~~~r~~i~~v  422 (587)
T 3qf4_A          344 FENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDP-ERGRVEVDELDVRTVKLKDLRGHISAV  422 (587)
T ss_dssp             EEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCC-SEEEEEESSSBGGGBCHHHHHHHEEEE
T ss_pred             EEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC-CCcEEEECCEEcccCCHHHHHhheEEE
Confidence            368899994  46799999999999999999999999999999999999999 699999999998542   356789999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHH-----HHHHHHHHc--CCccccCCCCCCCChHHHHHHHHHHHHhh
Q psy8250          76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR-----TVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQTII  148 (212)
Q Consensus        76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgGqrqRv~lA~al~~  148 (212)
                      ||++.+|+. |++||+.++...     ....+..+     .+.+.++.+  |++...++++.+||||||||++|||||+.
T Consensus       423 ~Q~~~lf~~-tv~eni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~  496 (587)
T 3qf4_A          423 PQETVLFSG-TIKENLKWGRED-----ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVK  496 (587)
T ss_dssp             CSSCCCCSE-EHHHHHTTTCSS-----CCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHT
T ss_pred             CCCCcCcCc-cHHHHHhccCCC-----CCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHc
Confidence            999998875 999999874321     11111111     122333333  55666788889999999999999999999


Q ss_pred             CCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250         149 VQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       149 ~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      +|+++||||||+ ||+.+.+.+.+.|+++.+..    .+|+++.+..++  .+|++|+++++|+++|+.+
T Consensus       497 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~  566 (587)
T 3qf4_A          497 KPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLE  566 (587)
T ss_dssp             CCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred             CCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            999999999999 99999999999999885432    379999876544  4788999999999998753

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=100.00  E-value=6.3e-48  Score=352.24  Aligned_cols=200  Identities=20%  Similarity=0.247  Sum_probs=165.7

Q ss_pred             CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250           1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV   75 (212)
Q Consensus         1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v   75 (212)
                      +++++++|++  ..+|+|+||++++||++||+||||||||||+++|+|+++| ++|+|.++|+++..   ..+++.++||
T Consensus       342 ~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p-~~G~i~~~g~~~~~~~~~~~r~~i~~v  420 (578)
T 4a82_A          342 IDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV-TSGQILIDGHNIKDFLTGSLRNQIGLV  420 (578)
T ss_dssp             EEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC-SEEEEEETTEEGGGSCHHHHHHTEEEE
T ss_pred             EEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCC-CCcEEEECCEEhhhCCHHHHhhheEEE
Confidence            3688999964  5799999999999999999999999999999999999999 69999999999854   2356789999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-----------cccCCCCCCCChHHHHHHHHHH
Q psy8250          76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-----------KCKNSVLNVLSGGERKRVALAV  144 (212)
Q Consensus        76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LSgGqrqRv~lA~  144 (212)
                      ||++.+|+. |++||+.++..     ...    .+.+.++++..++.           ...+++..+||||||||++|||
T Consensus       421 ~Q~~~l~~~-tv~eni~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAr  490 (578)
T 4a82_A          421 QQDNILFSD-TVKENILLGRP-----TAT----DEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIAR  490 (578)
T ss_dssp             CSSCCCCSS-BHHHHHGGGCS-----SCC----HHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHH
T ss_pred             eCCCccCcc-cHHHHHhcCCC-----CCC----HHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHH
Confidence            999998876 99999987421     111    12344555555443           3345556789999999999999


Q ss_pred             HHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250         145 QTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       145 al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      ||+.+|+++||||||+ ||+.+.+.+.+.++++.+..    .+|+++.+..++  .+|++|++++.|+++|+.+
T Consensus       491 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~  564 (578)
T 4a82_A          491 IFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA  564 (578)
T ss_dssp             HHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence            9999999999999999 99999999999999886543    379998876544  4788999999999998753

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=100.00  E-value=2.8e-47  Score=348.23  Aligned_cols=200  Identities=17%  Similarity=0.236  Sum_probs=166.6

Q ss_pred             CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEEE
Q psy8250           1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGFV   75 (212)
Q Consensus         1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~v   75 (212)
                      ++++++.|++  +.+|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++...   .+++.++||
T Consensus       344 ~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p-~~G~i~~~g~~~~~~~~~~~~~~i~~v  422 (582)
T 3b60_A          344 FRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI-DEGHILMDGHDLREYTLASLRNQVALV  422 (582)
T ss_dssp             EEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC-SEEEEEETTEETTTBCHHHHHHTEEEE
T ss_pred             EEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCC-CCCeEEECCEEccccCHHHHHhhCeEE
Confidence            3688999973  6799999999999999999999999999999999999999 699999999998542   356779999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-----------ccCCCCCCCChHHHHHHHHHH
Q psy8250          76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-----------CKNSVLNVLSGGERKRVALAV  144 (212)
Q Consensus        76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgGqrqRv~lA~  144 (212)
                      ||++.+|+. |++||+.++..    ....    .+++.++++.+++.+           ..++++.+||||||||++|||
T Consensus       423 ~Q~~~l~~~-tv~eni~~~~~----~~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAr  493 (582)
T 3b60_A          423 SQNVHLFND-TVANNIAYART----EEYS----REQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIAR  493 (582)
T ss_dssp             CSSCCCCSS-BHHHHHHTTTT----SCCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHH
T ss_pred             ccCCcCCCC-CHHHHHhccCC----CCCC----HHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHH
Confidence            999998875 99999987531    1112    234556666666543           345566899999999999999


Q ss_pred             HHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhh
Q psy8250         145 QTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       145 al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~  210 (212)
                      ||+++|+++||||||+ ||+.+++.+.+.|+++.+..    .+|+++.+..++  .+|++|++++.|+++++.
T Consensus       494 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~  566 (582)
T 3b60_A          494 ALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELL  566 (582)
T ss_dssp             HHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHH
T ss_pred             HHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence            9999999999999999 99999999999999987532    379988765444  478899999999999874

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=5.8e-47  Score=347.07  Aligned_cols=200  Identities=20%  Similarity=0.250  Sum_probs=165.4

Q ss_pred             CcccccccCC-cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEc
Q psy8250           1 METFHPLFGD-TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVP   76 (212)
Q Consensus         1 ~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~   76 (212)
                      ++++++.|++ ..+|+|+||++++||++||+||||||||||+++|+|+++| ++|+|.++|.++..   ..+++.++|||
T Consensus       357 ~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p-~~G~i~~~g~~i~~~~~~~~r~~i~~v~  435 (598)
T 3qf4_B          357 FKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDV-DRGQILVDGIDIRKIKRSSLRSSIGIVL  435 (598)
T ss_dssp             EEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCC-SEEEEEETTEEGGGSCHHHHHHHEEEEC
T ss_pred             EEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCC-CCeEEEECCEEhhhCCHHHHHhceEEEe
Confidence            3688999964 5799999999999999999999999999999999999999 69999999999854   24567899999


Q ss_pred             CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCC-----------CCCCCChHHHHHHHHHHH
Q psy8250          77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNS-----------VLNVLSGGERKRVALAVQ  145 (212)
Q Consensus        77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGqrqRv~lA~a  145 (212)
                      |++.+|+. |++||+.++...     ..    .+.+.++++.+++.+..++           ...+||||||||++||||
T Consensus       436 Q~~~lf~~-tv~eni~~~~~~-----~~----~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAra  505 (598)
T 3qf4_B          436 QDTILFST-TVKENLKYGNPG-----AT----DEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRA  505 (598)
T ss_dssp             TTCCCCSS-BHHHHHHSSSTT-----CC----TTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHH
T ss_pred             CCCccccc-cHHHHHhcCCCC-----CC----HHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHH
Confidence            99988865 999999874211     11    1234455555555443333           347899999999999999


Q ss_pred             HhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250         146 TIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       146 l~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      |+.+|++|||||||+ ||+.+...+.+.|+++.+..    .+|+++.+..++  .+|++|++++.|+++++.+
T Consensus       506 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~  578 (598)
T 3qf4_B          506 FLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQ  578 (598)
T ss_dssp             HHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHH
T ss_pred             HhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence            999999999999999 99999999999999986533    379999886654  3788999999999998753

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=100.00  E-value=1.9e-45  Score=309.77  Aligned_cols=184  Identities=24%  Similarity=0.301  Sum_probs=141.7

Q ss_pred             cccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCC
Q psy8250           2 ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLT   81 (212)
Q Consensus         2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~   81 (212)
                      +++++.  ++.+|+++||+|++|++++|+||||||||||+|+|+|+++| ++|+|.++|          .++|+||++.+
T Consensus        44 ~~l~~~--~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p-~~G~I~~~g----------~i~~v~Q~~~l  110 (290)
T 2bbs_A           44 SNFSLL--GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP-SEGKIKHSG----------RISFCSQNSWI  110 (290)
T ss_dssp             --------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCE-EEEEEECCS----------CEEEECSSCCC
T ss_pred             EEEEEc--CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCcEEEECC----------EEEEEeCCCcc
Confidence            566764  46799999999999999999999999999999999999998 699999998          38999999988


Q ss_pred             CCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccc-----------cCCCCCCCChHHHHHHHHHHHHhhCC
Q psy8250          82 VDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKC-----------KNSVLNVLSGGERKRVALAVQTIIVQ  150 (212)
Q Consensus        82 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGqrqRv~lA~al~~~p  150 (212)
                      ++. ||+||+. +..      ...    ..+.++++.+++.+.           .++++.+||||||||++|||||+.+|
T Consensus       111 ~~~-tv~enl~-~~~------~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p  178 (290)
T 2bbs_A          111 MPG-TIKENII-GVS------YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA  178 (290)
T ss_dssp             CSS-BHHHHHH-TTC------CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCC
T ss_pred             Ccc-cHHHHhh-Ccc------cch----HHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCC
Confidence            875 9999997 321      111    112334445555332           23446899999999999999999999


Q ss_pred             CeEEecCCCC-CChhhHHHHHHHH-HHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhh
Q psy8250         151 SGFVPQHDLT-VDTLTVHEHMTLM-ARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       151 ~llilDEPt~-lD~~~~~~~~~~l-~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~  210 (212)
                      ++|||||||+ ||+.++..+++++ .+++...    .+|+++.+..++  .+|++|+++..|+++++.
T Consensus       179 ~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~  246 (290)
T 2bbs_A          179 DLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQ  246 (290)
T ss_dssp             SEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHH
T ss_pred             CEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHh
Confidence            9999999999 9999999999964 4554322    379998775433  368899999999988874

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=100.00  E-value=9.5e-44  Score=348.42  Aligned_cols=204  Identities=20%  Similarity=0.269  Sum_probs=166.6

Q ss_pred             CcccccccCC---cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEE
Q psy8250           1 METFHPLFGD---TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGF   74 (212)
Q Consensus         1 ~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~   74 (212)
                      +++++++|++   ..+|+||||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++..   ..+++.+||
T Consensus       390 ~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~-~~G~i~i~g~~i~~~~~~~~r~~i~~  468 (1284)
T 3g5u_A          390 FKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP-LDGMVSIDGQDIRTINVRYLREIIGV  468 (1284)
T ss_dssp             EEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCC-SEEEEEETTEEGGGSCHHHHHHHEEE
T ss_pred             EEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEEHHhCCHHHHHhheEE
Confidence            3688999964   3699999999999999999999999999999999999999 69999999999854   345678999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHH-----HHHHHHHHc--CCccccCCCCCCCChHHHHHHHHHHHHh
Q psy8250          75 VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR-----TVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQTI  147 (212)
Q Consensus        75 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgGqrqRv~lA~al~  147 (212)
                      |+|+|.+|+. |++||+.++...     ....+..+     .+.+.++.+  |++.....+..+||||||||++|||||+
T Consensus       469 v~Q~~~l~~~-ti~eNi~~g~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~  542 (1284)
T 3g5u_A          469 VSQEPVLFAT-TIAENIRYGRED-----VTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALV  542 (1284)
T ss_dssp             ECSSCCCCSS-CHHHHHHHHCSS-----CCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHH
T ss_pred             EcCCCccCCc-cHHHHHhcCCCC-----CCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHh
Confidence            9999998876 999999986321     11111111     123344444  3444556677899999999999999999


Q ss_pred             hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250         148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      .+|++|||||||+ ||+.+.+.+.+.++++.+..    .+|+++.+..++  .+|++|++++.|+++++.+
T Consensus       543 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~  613 (1284)
T 3g5u_A          543 RNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMR  613 (1284)
T ss_dssp             HCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTCSEEEECSSSCCCCEECHHHHHH
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence            9999999999999 99999999999998876543    379999886654  4789999999999998743

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=100.00  E-value=9.1e-45  Score=356.36  Aligned_cols=201  Identities=19%  Similarity=0.268  Sum_probs=168.0

Q ss_pred             cccccccCC---cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250           2 ETFHPLFGD---TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV   75 (212)
Q Consensus         2 ~~l~~~~~~---~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v   75 (212)
                      ++++++|.+   .++|+||||+|++||.+||+||||||||||+++|.|++.| ++|+|.+||.++..   ..+|++++||
T Consensus      1080 ~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-~~G~I~iDG~di~~i~~~~lR~~i~~V 1158 (1321)
T 4f4c_A         1080 KNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDT-LGGEIFIDGSEIKTLNPEHTRSQIAIV 1158 (1321)
T ss_dssp             EEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCC-SSSEEEETTEETTTBCHHHHHTTEEEE
T ss_pred             EEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccC-CCCEEEECCEEhhhCCHHHHHhheEEE
Confidence            688999953   3699999999999999999999999999999999999999 69999999999965   3578899999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-----------ccCCCCCCCChHHHHHHHHHH
Q psy8250          76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-----------CKNSVLNVLSGGERKRVALAV  144 (212)
Q Consensus        76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgGqrqRv~lA~  144 (212)
                      ||+|.+|+. |++||+.++..-   ...    ..+.+.++++..++.+           .......+||||||||++|||
T Consensus      1159 ~Qdp~LF~g-TIreNI~~gld~---~~~----sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiAR 1230 (1321)
T 4f4c_A         1159 SQEPTLFDC-SIAENIIYGLDP---SSV----TMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIAR 1230 (1321)
T ss_dssp             CSSCCCCSE-EHHHHHSSSSCT---TTS----CHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHH
T ss_pred             CCCCEeeCc-cHHHHHhccCCC---CCC----CHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHH
Confidence            999999887 999999875321   111    2344566666666543           233344679999999999999


Q ss_pred             HHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250         145 QTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       145 al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      ||+++|+||||||||| ||+.+.+.+.+.|+++.+..    .+|.++.+..+|  .+|++|++++.|+++|+-+
T Consensus      1231 Allr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A         1231 ALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp             HHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHHH
T ss_pred             HHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            9999999999999999 99999999999998875543    269988887765  4899999999999999854

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=100.00  E-value=1.2e-43  Score=348.35  Aligned_cols=200  Identities=19%  Similarity=0.256  Sum_probs=167.3

Q ss_pred             CcccccccC---CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEE
Q psy8250           1 METFHPLFG---DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGF   74 (212)
Q Consensus         1 ~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~   74 (212)
                      +++++++|+   +.++|+|+||+|++|+.+||+||||||||||+++|.|++.| .+|+|.+||.++..   ..++++++|
T Consensus       418 ~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~-~~G~I~idG~~i~~~~~~~lr~~i~~  496 (1321)
T 4f4c_A          418 VENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDV-LKGKITIDGVDVRDINLEFLRKNVAV  496 (1321)
T ss_dssp             EEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCC-SEEEEEETTEETTTSCHHHHHHHEEE
T ss_pred             EEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccccc-ccCcccCCCccchhccHHHHhhcccc
Confidence            368899995   35799999999999999999999999999999999999999 69999999999865   346788999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcC-----------CccccCCCCCCCChHHHHHHHHH
Q psy8250          75 VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELG-----------LLKCKNSVLNVLSGGERKRVALA  143 (212)
Q Consensus        75 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~LSgGqrqRv~lA  143 (212)
                      |+|+|.+|+. |++||+.|+..     ...    .+++.++++..+           .+.........||||||||++||
T Consensus       497 v~Q~~~Lf~~-TI~eNI~~g~~-----~~~----~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiA  566 (1321)
T 4f4c_A          497 VSQEPALFNC-TIEENISLGKE-----GIT----REEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIA  566 (1321)
T ss_dssp             ECSSCCCCSE-EHHHHHHTTCT-----TCC----HHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHH
T ss_pred             cCCcceeeCC-chhHHHhhhcc-----cch----HHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHH
Confidence            9999998876 99999998632     112    223444444443           44445566678999999999999


Q ss_pred             HHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250         144 VQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       144 ~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      ||++.+|+++||||||| ||+.+.+.+.+.|.++.+..    .+|++..+..++  .+|++|++++.|+.+|+.+
T Consensus       567 RAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL~~  641 (1321)
T 4f4c_A          567 RALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMA  641 (1321)
T ss_dssp             HHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHHHHT
T ss_pred             HHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHHHHH
Confidence            99999999999999999 99999999999999987654    379998877665  4789999999999999854

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=100.00  E-value=6.3e-42  Score=313.55  Aligned_cols=190  Identities=21%  Similarity=0.228  Sum_probs=160.6

Q ss_pred             cccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCC
Q psy8250           2 ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLT   81 (212)
Q Consensus         2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~   81 (212)
                      +++++.|++. .|+++||++.+||++||+||||||||||+|+|+|++.| ++|+|.+          ...++|+||++..
T Consensus       361 ~~l~~~~~~~-~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p-~~G~I~~----------~~~i~~v~Q~~~~  428 (607)
T 3bk7_A          361 PRLVKDYGSF-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP-TEGKVEW----------DLTVAYKPQYIKA  428 (607)
T ss_dssp             CCEEEECSSC-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC-SBSCCCC----------CCCEEEECSSCCC
T ss_pred             eceEEEecce-EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEE----------eeEEEEEecCccC
Confidence            5788888774 68999999999999999999999999999999999999 6999976          1358999999888


Q ss_pred             CCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-
Q psy8250          82 VDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-  160 (212)
Q Consensus        82 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-  160 (212)
                      ++.+||.+++........       .....+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+ 
T Consensus       429 ~~~~tv~e~~~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~  501 (607)
T 3bk7_A          429 EYEGTVYELLSKIDSSKL-------NSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAY  501 (607)
T ss_dssp             CCSSBHHHHHHHHHHHHH-------HCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTT
T ss_pred             CCCCcHHHHHHhhhccCC-------CHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccC
Confidence            788999998876411110       113467889999999999999999999999999999999999999999999999 


Q ss_pred             CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHh--cCeeecCCchhhh
Q psy8250         161 VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKE--LGLLKCRPADELN  210 (212)
Q Consensus       161 lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~--g~~~~~~~~~~~~  210 (212)
                      ||+.++..++++|++++.+ .     ++||++++... +  .+|++  |++.+.|+++++.
T Consensus       502 LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~  562 (607)
T 3bk7_A          502 LDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMR  562 (607)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHH
Confidence            9999999999999998643 2     37999998764 3  35654  6777889988764

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=100.00  E-value=1.1e-41  Score=308.44  Aligned_cols=190  Identities=22%  Similarity=0.239  Sum_probs=159.5

Q ss_pred             cccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCC
Q psy8250           2 ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLT   81 (212)
Q Consensus         2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~   81 (212)
                      +++++.|++. .|+++||+|.+||++||+||||||||||+|+|+|+++| ++|+|.+          ...++|+||++..
T Consensus       291 ~~l~~~~~~~-~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p-~~G~i~~----------~~~i~~v~Q~~~~  358 (538)
T 1yqt_A          291 PRLVKDYGSF-RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP-TEGKIEW----------DLTVAYKPQYIKA  358 (538)
T ss_dssp             CCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC-SBCCCCC----------CCCEEEECSSCCC
T ss_pred             eeEEEEECCE-EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEE----------CceEEEEecCCcC
Confidence            5778888764 68999999999999999999999999999999999998 6999986          1358999999887


Q ss_pred             CCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-
Q psy8250          82 VDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-  160 (212)
Q Consensus        82 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-  160 (212)
                      ++.+||.+++........       ...+.+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+ 
T Consensus       359 ~~~~tv~~~~~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~  431 (538)
T 1yqt_A          359 DYEGTVYELLSKIDASKL-------NSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAY  431 (538)
T ss_dssp             CCSSBHHHHHHHHHHHHH-------TCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTT
T ss_pred             CCCCcHHHHHHhhhccCC-------CHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccc
Confidence            788999988765311110       013457789999999988999999999999999999999999999999999999 


Q ss_pred             CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHh--cCeeecCCchhhh
Q psy8250         161 VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKE--LGLLKCRPADELN  210 (212)
Q Consensus       161 lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~--g~~~~~~~~~~~~  210 (212)
                      ||+.++..++++|++++++ .     ++||++++... +  .+|++  |++.+.|+++++.
T Consensus       432 LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~  492 (538)
T 1yqt_A          432 LDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMR  492 (538)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHH
Confidence            9999999999999998643 2     37999998764 3  35654  6777889988764

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=100.00  E-value=1.1e-42  Score=340.78  Aligned_cols=201  Identities=17%  Similarity=0.241  Sum_probs=162.6

Q ss_pred             cccccccCCc---ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEEE
Q psy8250           2 ETFHPLFGDT---NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGFV   75 (212)
Q Consensus         2 ~~l~~~~~~~---~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~v   75 (212)
                      +++++.|++.   .+|+||||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++...   .+++.++||
T Consensus      1034 ~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p-~~G~I~i~g~~i~~~~~~~~r~~i~~v 1112 (1284)
T 3g5u_A         1034 SGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDP-MAGSVFLDGKEIKQLNVQWLRAQLGIV 1112 (1284)
T ss_dssp             EEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCC-SEEEEESSSSCTTSSCHHHHTTSCEEE
T ss_pred             EEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC-CCCEEEECCEEcccCCHHHHHhceEEE
Confidence            5788999643   699999999999999999999999999999999999999 699999999998642   456789999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-----------ccCCCCCCCChHHHHHHHHHH
Q psy8250          76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-----------CKNSVLNVLSGGERKRVALAV  144 (212)
Q Consensus        76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgGqrqRv~lA~  144 (212)
                      ||++.+|+ .|++||+.++....   ....    ..+.++++..++.+           .......+||||||||++|||
T Consensus      1113 ~Q~~~l~~-~ti~eNi~~~~~~~---~~~~----~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iAR 1184 (1284)
T 3g5u_A         1113 SQEPILFD-CSIAENIAYGDNSR---VVSY----EEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIAR 1184 (1284)
T ss_dssp             ESSCCCCS-SBHHHHHTCCCSSC---CCCH----HHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHH
T ss_pred             CCCCcccc-ccHHHHHhccCCCC---CCCH----HHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHH
Confidence            99998775 59999998743211   1111    22334444444433           233445689999999999999


Q ss_pred             HHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250         145 QTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       145 al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      ||+.+|++|||||||+ ||+.+.+.+.+.|+++....    .+|+++.+..++  .+|++|++++.|+++++.+
T Consensus      1185 al~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A         1185 ALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp             HHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEEEEECHHHHHH
T ss_pred             HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence            9999999999999999 99999999999998865432    379999876554  4788999999999998754

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=100.00  E-value=5.8e-41  Score=303.52  Aligned_cols=173  Identities=21%  Similarity=0.251  Sum_probs=147.8

Q ss_pred             cccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCC
Q psy8250           2 ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLT   81 (212)
Q Consensus         2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~   81 (212)
                      +++++.|++. .|+++||+|++||++||+||||||||||+|+|+|+++| ++|+|.+++.         .++|++|+...
T Consensus       273 ~~l~~~~~~~-~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~~~---------~i~~~~q~~~~  341 (538)
T 3ozx_A          273 TKIIKKLGDF-QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITA-DEGSVTPEKQ---------ILSYKPQRIFP  341 (538)
T ss_dssp             CCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC-SBCCEESSCC---------CEEEECSSCCC
T ss_pred             cceEEEECCE-EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCe---------eeEeechhccc
Confidence            5677888774 57888999999999999999999999999999999999 6999997653         37999999877


Q ss_pred             CCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-
Q psy8250          82 VDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-  160 (212)
Q Consensus        82 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-  160 (212)
                      .+.+||.+|+.+.....    ..  .....+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+ 
T Consensus       342 ~~~~tv~~~l~~~~~~~----~~--~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~g  415 (538)
T 3ozx_A          342 NYDGTVQQYLENASKDA----LS--TSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSY  415 (538)
T ss_dssp             CCSSBHHHHHHHHCSST----TC--TTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTT
T ss_pred             ccCCCHHHHHHHhhhhc----cc--hhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccC
Confidence            77889999988632111    00  112356788999999999999999999999999999999999999999999999 


Q ss_pred             CChhhHHHHHHHHHHHHhhc------CcchHHHHHHH
Q psy8250         161 VDTLTVHEHMTLMARLKMDR------NLHHVERARTV  191 (212)
Q Consensus       161 lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~  191 (212)
                      ||+.++..++++|++++++.      ++||++++...
T Consensus       416 LD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~  452 (538)
T 3ozx_A          416 LDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYI  452 (538)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence            99999999999999997642      37999998764

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-39  Score=295.95  Aligned_cols=190  Identities=18%  Similarity=0.189  Sum_probs=155.7

Q ss_pred             ccccccCC-cceeeeeEEEEcCC-----cEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEc
Q psy8250           3 TFHPLFGD-TNYKESLSGIAESG-----SLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVP   76 (212)
Q Consensus         3 ~l~~~~~~-~~~l~~vs~~i~~G-----e~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~   76 (212)
                      ++++.|++ ..+++++||++.+|     |++||+||||||||||+++|+|++.| ++|+.      +    ....++|+|
T Consensus       351 ~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p-~~G~~------~----~~~~i~~~~  419 (608)
T 3j16_B          351 SRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP-DEGQD------I----PKLNVSMKP  419 (608)
T ss_dssp             SSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCC-SBCCC------C----CSCCEEEEC
T ss_pred             ceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCC-CCCcC------c----cCCcEEEec
Confidence            45666755 45889999999998     78999999999999999999999999 68862      1    123589999


Q ss_pred             CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250          77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ  156 (212)
Q Consensus        77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD  156 (212)
                      |+.......||.+++....  ..  ...   ....+.++++.+++.+..++++.+|||||||||+|||||+.+|++||||
T Consensus       420 q~~~~~~~~tv~e~~~~~~--~~--~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLD  492 (608)
T 3j16_B          420 QKIAPKFPGTVRQLFFKKI--RG--QFL---NPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLID  492 (608)
T ss_dssp             SSCCCCCCSBHHHHHHHHC--SS--TTT---SHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEEC
T ss_pred             ccccccCCccHHHHHHHHh--hc--ccc---cHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence            9977766779999875321  11  111   1245678999999999999999999999999999999999999999999


Q ss_pred             CCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHh--cCeeecCCchhhh
Q psy8250         157 HDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKE--LGLLKCRPADELN  210 (212)
Q Consensus       157 EPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~--g~~~~~~~~~~~~  210 (212)
                      |||+ ||+.++..++++|+++..+ +     ++||++++... +  .+|++  |++++.|+|+++.
T Consensus       493 EPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~  558 (608)
T 3j16_B          493 EPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLL  558 (608)
T ss_dssp             CTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHh
Confidence            9999 9999999999999998643 2     37999998764 3  35664  8899999998874

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=100.00  E-value=1.2e-39  Score=295.23  Aligned_cols=176  Identities=19%  Similarity=0.181  Sum_probs=144.2

Q ss_pred             cccccccCCc-ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEE---------EECCEeCCcc-----
Q psy8250           2 ETFHPLFGDT-NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQI---------LLNGLEVEKN-----   66 (212)
Q Consensus         2 ~~l~~~~~~~-~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I---------~~~g~~~~~~-----   66 (212)
                      ++++++|++. .++++|| +|++||++||+||||||||||+|+|+|++.| ++|++         .++|.++...     
T Consensus        25 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p-~~G~~~~~~~~~~~~~~g~~~~~~~~~~~  102 (538)
T 1yqt_A           25 EDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIP-NLCGDNDSWDGVIRAFRGNELQNYFEKLK  102 (538)
T ss_dssp             CCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCC-CTTTTCCSHHHHHHHTTTSTHHHHHHHHH
T ss_pred             cCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCccCcchhhhHHhhCCccHHHHHHHHH
Confidence            5899999876 4899999 9999999999999999999999999999998 69985         3566544210     


Q ss_pred             cccceEEEEcCCCCCCCC---CCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHH
Q psy8250          67 LMVKVSGFVPQHDLTVDT---LTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA  143 (212)
Q Consensus        67 ~~~~~i~~v~Q~~~~~~~---ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA  143 (212)
                      .....+++++|....++.   .|+.+++...    .        ...++.++++.+|+....++++.+|||||||||+||
T Consensus       103 ~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~----~--------~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iA  170 (538)
T 1yqt_A          103 NGEIRPVVKPQYVDLIPKAVKGKVIELLKKA----D--------ETGKLEEVVKALELENVLEREIQHLSGGELQRVAIA  170 (538)
T ss_dssp             TTSCCCEEECSCGGGSGGGCCSBHHHHHHHH----C--------SSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHH
T ss_pred             HHhhhhhhhhhhhhhcchhhhccHHHHHhhh----h--------HHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHH
Confidence            112357899987543321   3888877531    0        123467899999999999999999999999999999


Q ss_pred             HHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH
Q psy8250         144 VQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV  191 (212)
Q Consensus       144 ~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~  191 (212)
                      |||+.+|++|||||||+ ||+.++..++++|++++++.     ++||++++...
T Consensus       171 raL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~  224 (538)
T 1yqt_A          171 AALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYL  224 (538)
T ss_dssp             HHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence            99999999999999999 99999999999999997653     27999988664

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=100.00  E-value=1.8e-39  Score=300.84  Aligned_cols=199  Identities=17%  Similarity=0.179  Sum_probs=130.1

Q ss_pred             CcceeeeeEEEEcCCcEEEEECCCCccHHHHH---------------------HHHHcCCCCCC-------ceEEEECCE
Q psy8250          10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLL---------------------ACISQRIQGDV-------DGQILLNGL   61 (212)
Q Consensus        10 ~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl---------------------~~i~g~~~p~~-------~G~I~~~g~   61 (212)
                      ...+|+||||+|++||++||+||||||||||+                     +++.|+..| +       .|.|.+++.
T Consensus        30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~-~~~~i~~~~~~i~~~~~  108 (670)
T 3ux8_A           30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKP-DVDAIEGLSPAISIDQK  108 (670)
T ss_dssp             CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------C-CCSEEESCCCEEEESSC
T ss_pred             CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccC-CccceeccccceEecCc
Confidence            45689999999999999999999999999998                     888888887 4       455566665


Q ss_pred             eCCcccccceEEEEcCCCC-------------------CCCCCCHHHHHHHHHhhhcccCCCHHHH------HHHHHHHH
Q psy8250          62 EVEKNLMVKVSGFVPQHDL-------------------TVDTLTVHEHMTLMARLKMDRNLHHVER------ARTVDALL  116 (212)
Q Consensus        62 ~~~~~~~~~~i~~v~Q~~~-------------------~~~~ltv~e~l~~~~~~~~~~~~~~~~~------~~~~~~~l  116 (212)
                      +.... .++.+++++|.+.                   .++.+||+||+.+........ ......      .....+++
T Consensus       109 ~~~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l  186 (670)
T 3ux8_A          109 TTSRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTE-KEAQIARLILREIRDRLGFL  186 (670)
T ss_dssp             C------CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHH
T ss_pred             hhhcc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccch-hhhHHHHHHHHHHHHHHHHH
Confidence            44221 2233455554332                   346789999998743221100 000000      01122468


Q ss_pred             HHcCCccc-cCCCCCCCChHHHHHHHHHHHHhhCCC--eEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHH
Q psy8250         117 KELGLLKC-KNSVLNVLSGGERKRVALAVQTIIVQS--GFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVER  187 (212)
Q Consensus       117 ~~~gl~~~-~~~~~~~LSgGqrqRv~lA~al~~~p~--llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~  187 (212)
                      +.+|+.+. .++++.+|||||||||+|||||+.+|+  +|||||||+ ||+.++..++++|+++++++     ++||++.
T Consensus       187 ~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~  266 (670)
T 3ux8_A          187 QNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDT  266 (670)
T ss_dssp             HHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHH
T ss_pred             HHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            89999765 689999999999999999999999998  999999999 99999999999999998654     3799987


Q ss_pred             HHHHHH--HH------HhcCeeecCCchhhhc
Q psy8250         188 ARTVDA--LL------KELGLLKCRPADELNR  211 (212)
Q Consensus       188 ~~~~~~--~l------~~g~~~~~~~~~~~~~  211 (212)
                      +..++.  +|      ++|+++++|+++++.+
T Consensus       267 ~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~  298 (670)
T 3ux8_A          267 MLAADYLIDIGPGAGIHGGEVVAAGTPEEVMN  298 (670)
T ss_dssp             HHHCSEEEEECSSSGGGCCSEEEEECHHHHHT
T ss_pred             HhhCCEEEEecccccccCCEEEEecCHHHHhc
Confidence            655443  44      8999999999998753

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=100.00  E-value=1.6e-39  Score=297.64  Aligned_cols=176  Identities=21%  Similarity=0.206  Sum_probs=144.3

Q ss_pred             cccccccCCc-ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEE---------EECCEeCCcc-----
Q psy8250           2 ETFHPLFGDT-NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQI---------LLNGLEVEKN-----   66 (212)
Q Consensus         2 ~~l~~~~~~~-~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I---------~~~g~~~~~~-----   66 (212)
                      ++++++|++. .+|+++| ++++||++||+||||||||||+|+|+|++.| ++|++         .++|.++...     
T Consensus        95 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p-~~G~~~~~~~~~~~~~~G~~~~~~~~~~~  172 (607)
T 3bk7_A           95 EDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIP-NLCEDNDSWDNVIRAFRGNELQNYFERLK  172 (607)
T ss_dssp             GSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCC-CTTTTCCCHHHHHHHTTTSTHHHHHHHHH
T ss_pred             CCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCC-CCCccccccchhhheeCCEehhhhhhhhh
Confidence            6889999876 4999999 9999999999999999999999999999999 69985         4566554221     


Q ss_pred             cccceEEEEcCCCCCCC---CCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHH
Q psy8250          67 LMVKVSGFVPQHDLTVD---TLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA  143 (212)
Q Consensus        67 ~~~~~i~~v~Q~~~~~~---~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA  143 (212)
                      ..+..+++++|....++   ..|+.|++..    .  .      ...++.++++.+|+.+..++++.+|||||||||+||
T Consensus       173 ~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~----~--~------~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIA  240 (607)
T 3bk7_A          173 NGEIRPVVKPQYVDLLPKAVKGKVRELLKK----V--D------EVGKFEEVVKELELENVLDRELHQLSGGELQRVAIA  240 (607)
T ss_dssp             HTSCCCEEECSCGGGGGGTCCSBHHHHHHH----T--C------CSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHH
T ss_pred             hhhcceEEeechhhhchhhccccHHHHhhh----h--H------HHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHH
Confidence            11234788888743322   2389998753    1  0      123467899999999999999999999999999999


Q ss_pred             HHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH
Q psy8250         144 VQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV  191 (212)
Q Consensus       144 ~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~  191 (212)
                      |||+.+|++|||||||+ ||+.++..++++|+++++++     ++||++.+...
T Consensus       241 raL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~  294 (607)
T 3bk7_A          241 AALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYL  294 (607)
T ss_dssp             HHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhh
Confidence            99999999999999999 99999999999999997653     27999987654

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=100.00  E-value=1.6e-37  Score=294.69  Aligned_cols=184  Identities=19%  Similarity=0.199  Sum_probs=151.0

Q ss_pred             ccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCC-CC
Q psy8250           3 TFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHD-LT   81 (212)
Q Consensus         3 ~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~-~~   81 (212)
                      ++++.|+++.+|+++||+|++|++++|+||||||||||+|+|+|       |+|  +|.+...   ...++|++|++ .+
T Consensus       440 ~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag-------G~i--~g~~~~~---~~~~~~v~q~~~~~  507 (986)
T 2iw3_A          440 EFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN-------GQV--DGFPTQE---ECRTVYVEHDIDGT  507 (986)
T ss_dssp             EEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH-------TCS--TTCCCTT---TSCEEETTCCCCCC
T ss_pred             eEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC-------CCc--CCCcccc---ceeEEEEccccccc
Confidence            68899999999999999999999999999999999999999995       222  3333211   12368999875 67


Q ss_pred             CCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC
Q psy8250          82 VDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT  160 (212)
Q Consensus        82 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~  160 (212)
                      ++.+|+.+|+.+  ..   .+.     ..++.++++.+|+. ...++++.+||||||||++|||||+.+|++|||||||+
T Consensus       508 ~~~ltv~e~l~~--~~---~~~-----~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs  577 (986)
T 2iw3_A          508 HSDTSVLDFVFE--SG---VGT-----KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTN  577 (986)
T ss_dssp             CTTSBHHHHHHT--TC---SSC-----HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTT
T ss_pred             ccCCcHHHHHHH--hh---cCH-----HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence            888999999975  11   111     45678999999995 67899999999999999999999999999999999999


Q ss_pred             -CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCee-ecCCchhhh
Q psy8250         161 -VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLL-KCRPADELN  210 (212)
Q Consensus       161 -lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~-~~~~~~~~~  210 (212)
                       ||+.++..++++|++  ...    .+||++++... +  .+|++|+++ +.|+++++.
T Consensus       578 ~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~  634 (986)
T 2iw3_A          578 HLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFV  634 (986)
T ss_dssp             TCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHH
T ss_pred             CCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHH
Confidence             999999999999988  221    37999988765 2  367899986 688887763

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=100.00  E-value=3.3e-38  Score=299.35  Aligned_cols=196  Identities=16%  Similarity=0.166  Sum_probs=148.4

Q ss_pred             CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCC
Q psy8250           1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQH   78 (212)
Q Consensus         1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~   78 (212)
                      ++++++.|++  +.+|+|+||++++|+++||+||||||||||+|+|+|++.| ++|+|+++|.        ..++|++|+
T Consensus       674 v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P-~sG~I~~~~~--------~~I~yv~Q~  744 (986)
T 2iw3_A          674 VTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLP-TSGEVYTHEN--------CRIAYIKQH  744 (986)
T ss_dssp             EEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCC-SEEEEEECTT--------CCEEEECHH
T ss_pred             EEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEEcCc--------cceEeeccc
Confidence            4688999965  5799999999999999999999999999999999999999 6999999863        136788776


Q ss_pred             CCC----CCCCCHHHHHHHHHhhh--------------------------------------------------------
Q psy8250          79 DLT----VDTLTVHEHMTLMARLK--------------------------------------------------------   98 (212)
Q Consensus        79 ~~~----~~~ltv~e~l~~~~~~~--------------------------------------------------------   98 (212)
                      +..    ....|+.+++.+.....                                                        
T Consensus       745 ~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~  824 (986)
T 2iw3_A          745 AFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLG  824 (986)
T ss_dssp             HHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             hhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhh
Confidence            421    12346666665421100                                                        


Q ss_pred             --------cccC--------CC--------------------------HHHHHHHHHHHHHHcCCcc-c-cCCCCCCCCh
Q psy8250          99 --------MDRN--------LH--------------------------HVERARTVDALLKELGLLK-C-KNSVLNVLSG  134 (212)
Q Consensus        99 --------~~~~--------~~--------------------------~~~~~~~~~~~l~~~gl~~-~-~~~~~~~LSg  134 (212)
                              ....        ++                          ......++.++++.+|+.. . .++++.+|||
T Consensus       825 ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~~LSG  904 (986)
T 2iw3_A          825 ENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSG  904 (986)
T ss_dssp             ESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGGGCCH
T ss_pred             hhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCccccCH
Confidence                    0000        00                          0001346788999999975 3 5889999999


Q ss_pred             HHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh--cCcchHHHHHHH-H--HHHHhcCeeecCC
Q psy8250         135 GERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD--RNLHHVERARTV-D--ALLKELGLLKCRP  205 (212)
Q Consensus       135 GqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~--~~~h~~~~~~~~-~--~~l~~g~~~~~~~  205 (212)
                      ||||||+|||||+.+|++|||||||+ ||+.+...+.+.|+++...  ..+||++++... +  .+|++|+++..|+
T Consensus       905 GQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~~G~  981 (986)
T 2iw3_A          905 GQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSGH  981 (986)
T ss_dssp             HHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHTTTCCEEECCBTTBCCC---
T ss_pred             HHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence            99999999999999999999999999 9999999999998776211  137999988653 2  4678999987775

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=100.00  E-value=1.2e-36  Score=281.92  Aligned_cols=190  Identities=19%  Similarity=0.227  Sum_probs=141.8

Q ss_pred             cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHH----------------------cCCCCCCceEEEECCEeCCcccc
Q psy8250          11 TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACIS----------------------QRIQGDVDGQILLNGLEVEKNLM   68 (212)
Q Consensus        11 ~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~----------------------g~~~p~~~G~I~~~g~~~~~~~~   68 (212)
                      ..+|+||||+|++||+++|+||||||||||+++|+                      |+..+  .|.|.+++.++.....
T Consensus       335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~--~~~i~~~~~~~~~~~~  412 (670)
T 3ux8_A          335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL--DKVIDIDQSPIGRTPR  412 (670)
T ss_dssp             STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC--SEEEECCSSCSCSSTT
T ss_pred             ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc--CceeEeccccCCCCCC
Confidence            35799999999999999999999999999998754                      33332  5688888877632100


Q ss_pred             --------------------------------------------cceEEEEcCCCCCC----------------------
Q psy8250          69 --------------------------------------------VKVSGFVPQHDLTV----------------------   82 (212)
Q Consensus        69 --------------------------------------------~~~i~~v~Q~~~~~----------------------   82 (212)
                                                                  ....|+++|+..++                      
T Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  492 (670)
T 3ux8_A          413 SNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEV  492 (670)
T ss_dssp             CCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTC
T ss_pred             cchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhe
Confidence                                                        00113333332222                      


Q ss_pred             ----------CCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-ccCCCCCCCChHHHHHHHHHHHHhhCC-
Q psy8250          83 ----------DTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQTIIVQ-  150 (212)
Q Consensus        83 ----------~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqrqRv~lA~al~~~p-  150 (212)
                                ..+|+.||+.+....         ....++.+.++.+++.. ..++++.+|||||||||+|||||+.+| 
T Consensus       493 ~~~~~~~~~~~~ltv~e~l~~~~~~---------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~  563 (670)
T 3ux8_A          493 TYKGKNIAEVLDMTVEDALDFFASI---------PKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSN  563 (670)
T ss_dssp             CBTTBCHHHHHTSBHHHHHHHTTTC---------HHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCC
T ss_pred             eecCCCHHHHhhCCHHHHHHHHHHh---------hhHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCC
Confidence                      247888988764321         12234567888999964 568899999999999999999999987 


Q ss_pred             --CeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHHH--HHH------HhcCeeecCCchhhhc
Q psy8250         151 --SGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTVD--ALL------KELGLLKCRPADELNR  211 (212)
Q Consensus       151 --~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~~--~~l------~~g~~~~~~~~~~~~~  211 (212)
                        ++|||||||+ ||+.++..++++|+++++++     ++||++.+..++  .+|      ++|+++++|+++++.+
T Consensus       564 ~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~  640 (670)
T 3ux8_A          564 GRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAE  640 (670)
T ss_dssp             SCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHT
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHh
Confidence              4999999999 99999999999999998654     379999875444  356      8999999999999854

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=100.00  E-value=1.8e-35  Score=267.54  Aligned_cols=174  Identities=17%  Similarity=0.142  Sum_probs=132.0

Q ss_pred             ccccccCCcceeeeeEEEE-cCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEE-----------EECCEeCCcc----
Q psy8250           3 TFHPLFGDTNYKESLSGIA-ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQI-----------LLNGLEVEKN----   66 (212)
Q Consensus         3 ~l~~~~~~~~~l~~vs~~i-~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I-----------~~~g~~~~~~----   66 (212)
                      +.+.+||.+ .|+-..+.+ ++||++||+||||||||||+|+|+|++.| ++|+|           .++|.++...    
T Consensus         4 ~~~~~~~~~-~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p-~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~   81 (538)
T 3ozx_A            4 EVIHRYKVN-GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIP-NFGDPNSKVGKDEVLKRFRGKEIYNYFKEL   81 (538)
T ss_dssp             CEEEESSTT-SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCC-CTTCTTSCCCHHHHHHHHTTSTTHHHHHHH
T ss_pred             CCceecCCC-ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCCccccccchhhHHhhcCCeeHHHHHHHH
Confidence            456677654 244445554 58999999999999999999999999999 69998           5677665221    


Q ss_pred             -cccceEEEEcCC----CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHH
Q psy8250          67 -LMVKVSGFVPQH----DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVA  141 (212)
Q Consensus        67 -~~~~~i~~v~Q~----~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~  141 (212)
                       .....+...+|.    +.++ ..++.+++...            ....++.++++.+++....++++.+|||||||||+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~-~~~v~~~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~  148 (538)
T 3ozx_A           82 YSNELKIVHKIQYVEYASKFL-KGTVNEILTKI------------DERGKKDEVKELLNMTNLWNKDANILSGGGLQRLL  148 (538)
T ss_dssp             HTTCCCEEEECSCTTGGGTTC-CSBHHHHHHHH------------CCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHH
T ss_pred             hhcccchhhccchhhhhhhhc-cCcHHHHhhcc------------hhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH
Confidence             011123333443    3333 23777754321            01234678899999999999999999999999999


Q ss_pred             HHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH
Q psy8250         142 LAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV  191 (212)
Q Consensus       142 lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~  191 (212)
                      |||||+.+|++|||||||+ ||+.++..++++|+++++..    ++||++++..+
T Consensus       149 iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~  203 (538)
T 3ozx_A          149 VAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYL  203 (538)
T ss_dssp             HHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHH
T ss_pred             HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhh
Confidence            9999999999999999999 99999999999999996522    27999988664

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-35  Score=268.84  Aligned_cols=178  Identities=18%  Similarity=0.232  Sum_probs=132.4

Q ss_pred             cccccccCCcc-eeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEE-----------EECCEeCCcc---
Q psy8250           2 ETFHPLFGDTN-YKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQI-----------LLNGLEVEKN---   66 (212)
Q Consensus         2 ~~l~~~~~~~~-~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I-----------~~~g~~~~~~---   66 (212)
                      ++++++|+... .+++++ .+++|+++||+||||||||||||+|+|++.| ++|+|           ++.|.++...   
T Consensus        81 ~~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P-~~G~i~~~~~~~~~~~~~~g~~~~~~~~~  158 (608)
T 3j16_B           81 AHVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKP-NLGRFDDPPEWQEIIKYFRGSELQNYFTK  158 (608)
T ss_dssp             TTEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCC-CTTTTCCSSCHHHHHHHTTTSTHHHHHHH
T ss_pred             CCeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCC-CCceEecccchhhhhheecChhhhhhhhH
Confidence            46788897653 667666 5899999999999999999999999999999 69987           2333322110   


Q ss_pred             cccceE--EEEcCCCCC------CCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHH
Q psy8250          67 LMVKVS--GFVPQHDLT------VDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERK  138 (212)
Q Consensus        67 ~~~~~i--~~v~Q~~~~------~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrq  138 (212)
                      ...+.+  .+.+|....      .+..++.+++...    .  .    ....++.++++.+|+.+..++++.+|||||||
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~----~--~----~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Q  228 (608)
T 3j16_B          159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLR----M--E----KSPEDVKRYIKILQLENVLKRDIEKLSGGELQ  228 (608)
T ss_dssp             HHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHH----C--C----SCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHH
T ss_pred             HHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhh----h--h----hHHHHHHHHHHHcCCcchhCCChHHCCHHHHH
Confidence            011111  233332111      1112344433221    0  1    12356789999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH
Q psy8250         139 RVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV  191 (212)
Q Consensus       139 Rv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~  191 (212)
                      ||+|||||+.+|++|||||||+ ||+.++..++++|++++.++     ++|+++++...
T Consensus       229 rv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~  287 (608)
T 3j16_B          229 RFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYL  287 (608)
T ss_dssp             HHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHH
T ss_pred             HHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence            9999999999999999999999 99999999999999997654     37999988764

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.98  E-value=3.4e-37  Score=274.10  Aligned_cols=186  Identities=15%  Similarity=0.087  Sum_probs=140.9

Q ss_pred             cccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCce-E-EEECCEeCCcccccceEEEEcCCC
Q psy8250           2 ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDG-Q-ILLNGLEVEKNLMVKVSGFVPQHD   79 (212)
Q Consensus         2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G-~-I~~~g~~~~~~~~~~~i~~v~Q~~   79 (212)
                      +++++.|+      ++||++++|++++|+||||||||||+|+|+|++.| ++| + |+++|.      .++.++|+||+.
T Consensus       122 ~nl~~~y~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p-~~G~~pI~vdg~------~~~~i~~vpq~~  188 (460)
T 2npi_A          122 YNLHFMLE------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALK-FNAYQPLYINLD------PQQPIFTVPGCI  188 (460)
T ss_dssp             HHHHHHHH------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHH-HHCCCCEEEECC------TTSCSSSCSSCC
T ss_pred             hhhhehhh------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccc-cCCceeEEEcCC------ccCCeeeeccch
Confidence            35666664      79999999999999999999999999999999988 699 9 999982      356689999997


Q ss_pred             C---CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHH--HhhCCCe--
Q psy8250          80 L---TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQ--TIIVQSG--  152 (212)
Q Consensus        80 ~---~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~a--l~~~p~l--  152 (212)
                      .   +++.+|+.+|+ ++.....  +.   ....++.++++.+|+.+..+  +.+|||||||||+||||  |+.+|++  
T Consensus       189 ~l~~~~~~~tv~eni-~~~~~~~--~~---~~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~  260 (460)
T 2npi_A          189 SATPISDILDAQLPT-WGQSLTS--GA---TLLHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRR  260 (460)
T ss_dssp             EEEECCSCCCTTCTT-CSCBCBS--SC---CSSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             hhcccccccchhhhh-ccccccc--Cc---chHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCc
Confidence            4   34567898888 5432110  10   01223456788889987665  88999999999999999  9999999  


Q ss_pred             --EEecC-CCC-CChhhHHHHHHHHHHHHhhc--CcchHH------HHHHH-H-------HHHH-hcCeeecCCchhhh
Q psy8250         153 --FVPQH-DLT-VDTLTVHEHMTLMARLKMDR--NLHHVE------RARTV-D-------ALLK-ELGLLKCRPADELN  210 (212)
Q Consensus       153 --lilDE-Pt~-lD~~~~~~~~~~l~~l~~~~--~~h~~~------~~~~~-~-------~~l~-~g~~~~~~~~~~~~  210 (212)
                        ||||| ||+ ||+. ...+.++++++....  ++|+.+      .+... +       .+|+ +|+++ +|+++++.
T Consensus       261 sGLlLDEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~  337 (460)
T 2npi_A          261 SGCIVDTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKR  337 (460)
T ss_dssp             SCEEEECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred             ceEEEeCCcccccChh-HHHHHHHHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence              99999 999 9999 666666666543221  257654      44332 2       3467 89998 89888764

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.97  E-value=3.4e-32  Score=257.65  Aligned_cols=192  Identities=18%  Similarity=0.265  Sum_probs=142.7

Q ss_pred             cceeeeeEEEEcCCcEEEEECCCCccHHHHH---------HHHHcCCCCC-----Cc------eEEEECCEeCCccc---
Q psy8250          11 TNYKESLSGIAESGSLLAIMGPSGAGKTTLL---------ACISQRIQGD-----VD------GQILLNGLEVEKNL---   67 (212)
Q Consensus        11 ~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl---------~~i~g~~~p~-----~~------G~I~~~g~~~~~~~---   67 (212)
                      ...|+||||+|++|++++|+||||||||||+         +.+.+...+.     ..      +.+.++..++....   
T Consensus       597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~  676 (916)
T 3pih_A          597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN  676 (916)
T ss_dssp             STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred             cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccc
Confidence            3469999999999999999999999999997         4444433221     11      23455554431100   


Q ss_pred             -----------------------------------------ccceEEEEcCCCCCCC-----------------------
Q psy8250          68 -----------------------------------------MVKVSGFVPQHDLTVD-----------------------   83 (212)
Q Consensus        68 -----------------------------------------~~~~i~~v~Q~~~~~~-----------------------   83 (212)
                                                               ..+..|+++++..+++                       
T Consensus       677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~  756 (916)
T 3pih_A          677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY  756 (916)
T ss_dssp             HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred             ccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhh
Confidence                                                     0012366666655544                       


Q ss_pred             ---------CCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-ccCCCCCCCChHHHHHHHHHHHHhhCC---
Q psy8250          84 ---------TLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQTIIVQ---  150 (212)
Q Consensus        84 ---------~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqrqRv~lA~al~~~p---  150 (212)
                               .+|+.|++.|....         ....++.++|+.+|+.. ..++++.+|||||||||+|||||+.+|   
T Consensus       757 ~g~~i~~vl~~tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p  827 (916)
T 3pih_A          757 KGKNISDILDMTVDEALEFFKNI---------PSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGR  827 (916)
T ss_dssp             TTBCHHHHHSSBHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSS
T ss_pred             ccCCHHHHhhCCHHHHHHHHhcc---------hhHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCC
Confidence                     36777777663221         12345678999999975 468899999999999999999999876   


Q ss_pred             CeEEecCCCC-CChhhHHHHHHHHHHHHhhcC-----cchHHHHHHHHH--HH------HhcCeeecCCchhhhc
Q psy8250         151 SGFVPQHDLT-VDTLTVHEHMTLMARLKMDRN-----LHHVERARTVDA--LL------KELGLLKCRPADELNR  211 (212)
Q Consensus       151 ~llilDEPt~-lD~~~~~~~~~~l~~l~~~~~-----~h~~~~~~~~~~--~l------~~g~~~~~~~~~~~~~  211 (212)
                      ++|||||||+ ||+.+++.++++|+++++++.     +||++.+..++.  +|      ++|++++.|+++++.+
T Consensus       828 ~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~  902 (916)
T 3pih_A          828 TLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAK  902 (916)
T ss_dssp             EEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHS
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHh
Confidence            7999999999 999999999999999986542     799998765443  56      8999999999999864

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.97  E-value=7.5e-33  Score=261.37  Aligned_cols=191  Identities=20%  Similarity=0.256  Sum_probs=143.4

Q ss_pred             ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHH-cCC---------CCCC----ce------EEEECCEeCCccc----
Q psy8250          12 NYKESLSGIAESGSLLAIMGPSGAGKTTLLACIS-QRI---------QGDV----DG------QILLNGLEVEKNL----   67 (212)
Q Consensus        12 ~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~-g~~---------~p~~----~G------~I~~~g~~~~~~~----   67 (212)
                      ..|+||||+|++|+++||+|+||||||||+++|+ |.+         .+..    .|      .|.+++.++....    
T Consensus       638 ~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~p  717 (972)
T 2r6f_A          638 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNP  717 (972)
T ss_dssp             SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCH
T ss_pred             cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccc
Confidence            3699999999999999999999999999999854 221         1110    13      4788887763110    


Q ss_pred             ------------------ccceEEEEcCCCCCCC----------------------------------------------
Q psy8250          68 ------------------MVKVSGFVPQHDLTVD----------------------------------------------   83 (212)
Q Consensus        68 ------------------~~~~i~~v~Q~~~~~~----------------------------------------------   83 (212)
                                        ..+.+||++|.+.+.+                                              
T Consensus       718 aty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~  797 (972)
T 2r6f_A          718 ATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYK  797 (972)
T ss_dssp             HHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBT
T ss_pred             hhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhcc
Confidence                              0133577777543210                                              


Q ss_pred             --------CCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-ccCCCCCCCChHHHHHHHHHHHHhhCC---C
Q psy8250          84 --------TLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQTIIVQ---S  151 (212)
Q Consensus        84 --------~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqrqRv~lA~al~~~p---~  151 (212)
                              .+|+.|++.|+..      . .  ...++.++++.+|+.. ..++++.+|||||||||+||++|+.+|   +
T Consensus       798 g~sI~dvl~ltv~e~l~~~~~------~-~--~~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~  868 (972)
T 2r6f_A          798 GKNIAEVLDMTVEDALDFFAS------I-P--KIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRT  868 (972)
T ss_dssp             TBCHHHHHTSBHHHHHHHTCS------C-H--HHHHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCE
T ss_pred             CCCHHHhhhcCHHHHHHHHhc------c-h--hHHHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCC
Confidence                    3466676654221      1 1  1234568999999987 789999999999999999999999875   9


Q ss_pred             eEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHHH--HHH------HhcCeeecCCchhhhc
Q psy8250         152 GFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTVD--ALL------KELGLLKCRPADELNR  211 (212)
Q Consensus       152 llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~~--~~l------~~g~~~~~~~~~~~~~  211 (212)
                      +|||||||+ ||+.++..++++|+++++++     .+||++.+..++  .+|      ++|++++.|+++++.+
T Consensus       869 lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G~Iv~~g~~~el~~  942 (972)
T 2r6f_A          869 LYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAE  942 (972)
T ss_dssp             EEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSCCSEEEEESHHHHHT
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCCEEEEecCHHHHHh
Confidence            999999999 99999999999999998754     379999875333  367      6899999999998753

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.97  E-value=1.8e-32  Score=257.58  Aligned_cols=196  Identities=17%  Similarity=0.187  Sum_probs=140.4

Q ss_pred             eeeeeEEEEcCCcEEEEECCCCccHHHHHHH-HHcCCC-------C-----------------CCce-------EEEECC
Q psy8250          13 YKESLSGIAESGSLLAIMGPSGAGKTTLLAC-ISQRIQ-------G-----------------DVDG-------QILLNG   60 (212)
Q Consensus        13 ~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~-i~g~~~-------p-----------------~~~G-------~I~~~g   60 (212)
                      .|+||||+|++|+++||+|+||||||||+++ |+|++.       |                 ..+|       .|.+++
T Consensus       512 ~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vdq  591 (842)
T 2vf7_A          512 NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVDQ  591 (842)
T ss_dssp             TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCCEEEESGGGCCEEEEECS
T ss_pred             ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccCcccccceEEEECC
Confidence            6999999999999999999999999999996 765431       1                 0256       688898


Q ss_pred             EeCCcccc-------------c---------ceEEEEcCC----------------------CCCC--------------
Q psy8250          61 LEVEKNLM-------------V---------KVSGFVPQH----------------------DLTV--------------   82 (212)
Q Consensus        61 ~~~~~~~~-------------~---------~~i~~v~Q~----------------------~~~~--------------   82 (212)
                      .++.....             +         +.+||.++.                      ..++              
T Consensus       592 ~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r  671 (842)
T 2vf7_A          592 KPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGTR  671 (842)
T ss_dssp             SCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETTCSSSCEEEECTTTTTCC
T ss_pred             eeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhhhcCCccceecccccCcc
Confidence            87632110             0         111222211                      1111              


Q ss_pred             ----------CCCCHHHHHHHHHh--hhcccCCCHHHHHHHHHHHHHHcCCcc-ccCCCCCCCChHHHHHHHHHHHHhhC
Q psy8250          83 ----------DTLTVHEHMTLMAR--LKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQTIIV  149 (212)
Q Consensus        83 ----------~~ltv~e~l~~~~~--~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqrqRv~lA~al~~~  149 (212)
                                ...++.|++.+...  +......   ....++.++++.+|+.. ..++++.+|||||||||+||++|+.+
T Consensus       672 ~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~---~~~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~  748 (842)
T 2vf7_A          672 YNAETLEVEYRGKNIADVLALTVDEAHDFFADE---SAIFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRS  748 (842)
T ss_dssp             BCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTS---HHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSC
T ss_pred             cchhhHhhhhcCCCHHHHHhccHHHHHHHhhcc---hHHHHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhC
Confidence                      22345554432110  0000011   12346789999999987 46899999999999999999999996


Q ss_pred             ---CCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHHH--HHH------HhcCeeecCCchhhhc
Q psy8250         150 ---QSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTVD--ALL------KELGLLKCRPADELNR  211 (212)
Q Consensus       150 ---p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~~--~~l------~~g~~~~~~~~~~~~~  211 (212)
                         |++|||||||+ ||+.++..++++|+++++++     .+||++++..++  .+|      ++|++++.|+++++.+
T Consensus       749 p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii~L~p~~g~~~G~Iv~~g~~~el~~  827 (842)
T 2vf7_A          749 GRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVAQ  827 (842)
T ss_dssp             CSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECHHHHTT
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCCCCCCCEEEEEcCHHHHHh
Confidence               79999999999 99999999999999998764     279999884333  367      6899999999998753

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.97  E-value=7e-31  Score=229.99  Aligned_cols=194  Identities=20%  Similarity=0.179  Sum_probs=134.1

Q ss_pred             cCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCC-------------------------------------
Q psy8250           8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQG-------------------------------------   50 (212)
Q Consensus         8 ~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p-------------------------------------   50 (212)
                      +.+..++++++|++.+| +++|+|||||||||||++|.++..+                                     
T Consensus        45 i~nf~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~  123 (415)
T 4aby_A           45 IRNLATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSS  123 (415)
T ss_dssp             EEEETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEET
T ss_pred             hccccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEec
Confidence            45667899999999999 9999999999999999999776641                                     


Q ss_pred             CCceEEEECCEeCCcc---cc-cceEEEEcCCCCCCCCCCHHHHHHHHHhhhccc-------------------CCC---
Q psy8250          51 DVDGQILLNGLEVEKN---LM-VKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDR-------------------NLH---  104 (212)
Q Consensus        51 ~~~G~I~~~g~~~~~~---~~-~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~-------------------~~~---  104 (212)
                      ..+|+++++|++++..   .+ ...+++++|++.++.. +..+...|........                   ...   
T Consensus       124 ~~~~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~  202 (415)
T 4aby_A          124 AGRGAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASE  202 (415)
T ss_dssp             TSCEEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             CCceEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            1378999999998642   22 2348999998766543 4444443322111000                   000   


Q ss_pred             -----------------------------------HHHHHHHHHHHHHHcCCccc-----------------------cC
Q psy8250         105 -----------------------------------HVERARTVDALLKELGLLKC-----------------------KN  126 (212)
Q Consensus       105 -----------------------------------~~~~~~~~~~~l~~~gl~~~-----------------------~~  126 (212)
                                                         .......+.+.++.+++...                       ..
T Consensus       203 ~~~~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  282 (415)
T 4aby_A          203 SSKHPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFS  282 (415)
T ss_dssp             -------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             hhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEE
Confidence                                               00011234445566655320                       00


Q ss_pred             -------CCCCC-CChHHHHHHHHHHHHhhCC--CeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH
Q psy8250         127 -------SVLNV-LSGGERKRVALAVQTIIVQ--SGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV  191 (212)
Q Consensus       127 -------~~~~~-LSgGqrqRv~lA~al~~~p--~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~  191 (212)
                             +++.. ||||||||++||++|+.+|  ++|||||||+ ||+..+..+.++|+++++..    +||+.+.+..+
T Consensus       283 ~~~~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~  362 (415)
T 4aby_A          283 ANPGEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARA  362 (415)
T ss_dssp             SSSSCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTC
T ss_pred             cCCCCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhc
Confidence                   22223 6999999999999999999  9999999999 99999999999999997322    38998776433


Q ss_pred             H--HHH----HhcCeeec
Q psy8250         192 D--ALL----KELGLLKC  203 (212)
Q Consensus       192 ~--~~l----~~g~~~~~  203 (212)
                      +  .+|    ++|+++..
T Consensus       363 d~i~~l~k~~~~G~~~~~  380 (415)
T 4aby_A          363 HHHYKVEKQVEDGRTVSH  380 (415)
T ss_dssp             SEEEEEEEEEETTEEEEE
T ss_pred             CeEEEEEEeccCCceEEE
Confidence            3  356    67776544

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.96  E-value=1.8e-33  Score=226.32  Aligned_cols=145  Identities=15%  Similarity=0.222  Sum_probs=100.8

Q ss_pred             cccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCC--cccccceEEEEcCCCCCCC
Q psy8250           6 PLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE--KNLMVKVSGFVPQHDLTVD   83 (212)
Q Consensus         6 ~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~--~~~~~~~i~~v~Q~~~~~~   83 (212)
                      +.|+++.+|++|    ++|++++|+||||||||||+++|+|+ .| ++|+|..  .++.  ....++.+||+||++    
T Consensus         8 k~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p-~~G~I~~--~~~~~~~~~~~~~ig~v~q~~----   75 (208)
T 3b85_A            8 KTLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-AL-QSKQVSR--IILTRPAVEAGEKLGFLPGTL----   75 (208)
T ss_dssp             CSHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HH-HTTSCSE--EEEEECSCCTTCCCCSSCC------
T ss_pred             CCHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CC-cCCeeee--EEecCCchhhhcceEEecCCH----
Confidence            467888899996    89999999999999999999999999 88 6999843  2221  123456799999986    


Q ss_pred             CCCHHHHH-HHHH----hhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250          84 TLTVHEHM-TLMA----RLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD  158 (212)
Q Consensus        84 ~ltv~e~l-~~~~----~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP  158 (212)
                          .||+ .+..    ....  ..    ....+.++++. ++             |||||++|||||+.+|++||||||
T Consensus        76 ----~enl~~~~~~~~~~~~~--~~----~~~~~~~~l~~-gl-------------Gq~qrv~lAraL~~~p~lllLDEP  131 (208)
T 3b85_A           76 ----NEKIDPYLRPLHDALRD--MV----EPEVIPKLMEA-GI-------------VEVAPLAYMRGRTLNDAFVILDEA  131 (208)
T ss_dssp             --------CTTTHHHHHHHTT--TS----CTTHHHHHHHT-TS-------------EEEEEGGGGTTCCBCSEEEEECSG
T ss_pred             ----HHHHHHHHHHHHHHHHH--hc----cHHHHHHHHHh-CC-------------chHHHHHHHHHHhcCCCEEEEeCC
Confidence                3444 2211    1110  00    11245556654 43             999999999999999999999999


Q ss_pred             CCCChhhHHHHHHHHHHHHhhc----CcchHHHHHH
Q psy8250         159 LTVDTLTVHEHMTLMARLKMDR----NLHHVERART  190 (212)
Q Consensus       159 t~lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~  190 (212)
                      |+-   ++..++++|+++ .+.    .+||++.+..
T Consensus       132 ts~---~~~~l~~~l~~l-~~g~tiivtHd~~~~~~  163 (208)
T 3b85_A          132 QNT---TPAQMKMFLTRL-GFGSKMVVTGDITQVDL  163 (208)
T ss_dssp             GGC---CHHHHHHHHTTB-CTTCEEEEEEC------
T ss_pred             ccc---cHHHHHHHHHHh-cCCCEEEEECCHHHHhC
Confidence            999   888999999888 433    3799887754

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.94  E-value=1.2e-30  Score=228.91  Aligned_cols=145  Identities=10%  Similarity=0.122  Sum_probs=120.4

Q ss_pred             cceeeeeEEEEcCCc--------------------EEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccc
Q psy8250          11 TNYKESLSGIAESGS--------------------LLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVK   70 (212)
Q Consensus        11 ~~~l~~vs~~i~~Ge--------------------~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~   70 (212)
                      +.++++|||++++|+                    ++||+||||||||||+|+|+|+..| ++|+|.++|.+++.     
T Consensus        36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p-~~GsI~~~g~~~t~-----  109 (413)
T 1tq4_A           36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNE-EEGAAKTGVVEVTM-----  109 (413)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTT-STTSCCCCC----C-----
T ss_pred             HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCc-cCceEEECCeecce-----
Confidence            358999999999999                    9999999999999999999999998 69999999977531     


Q ss_pred             eEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChH--HHHHHHHHHHHhh
Q psy8250          71 VSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGG--ERKRVALAVQTII  148 (212)
Q Consensus        71 ~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG--qrqRv~lA~al~~  148 (212)
                       .++++|++ .++.+|++|++.++.     .       ...+.++++.+++.+.. ..+. ||+|  |+||+.||+||+.
T Consensus       110 -~~~v~q~~-~~~~ltv~D~~g~~~-----~-------~~~~~~~L~~~~L~~~~-~~~~-lS~G~~~kqrv~la~aL~~  173 (413)
T 1tq4_A          110 -ERHPYKHP-NIPNVVFWDLPGIGS-----T-------NFPPDTYLEKMKFYEYD-FFII-ISATRFKKNDIDIAKAISM  173 (413)
T ss_dssp             -CCEEEECS-SCTTEEEEECCCGGG-----S-------SCCHHHHHHHTTGGGCS-EEEE-EESSCCCHHHHHHHHHHHH
T ss_pred             -eEEecccc-ccCCeeehHhhcccc-----h-------HHHHHHHHHHcCCCccC-CeEE-eCCCCccHHHHHHHHHHHh
Confidence             27899985 467788888764421     0       12467889999987653 3333 9999  9999999999999


Q ss_pred             ----------CCCeEEecCCCC-CChhhHHHHHHHHHHHH
Q psy8250         149 ----------VQSGFVPQHDLT-VDTLTVHEHMTLMARLK  177 (212)
Q Consensus       149 ----------~p~llilDEPt~-lD~~~~~~~~~~l~~l~  177 (212)
                                +|+++++||||+ ||+.++.++++.|+++.
T Consensus       174 ~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~  213 (413)
T 1tq4_A          174 MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNC  213 (413)
T ss_dssp             TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHH
T ss_pred             cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHH
Confidence                      999999999999 99999999999999985

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.94  E-value=2e-28  Score=190.69  Aligned_cols=141  Identities=15%  Similarity=0.151  Sum_probs=97.0

Q ss_pred             eeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCC-CCCHHHHHHHH
Q psy8250          16 SLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVD-TLTVHEHMTLM   94 (212)
Q Consensus        16 ~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~-~ltv~e~l~~~   94 (212)
                      +|||++++|++++|+||||||||||++++.+-.       ..+++.     .   ..++++|++.... .-++++.+   
T Consensus         1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~-------~~~~~d-----~---~~g~~~~~~~~~~~~~~~~~~~---   62 (171)
T 4gp7_A            1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPT-------EVISSD-----F---CRGLMSDDENDQTVTGAAFDVL---   62 (171)
T ss_dssp             CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGG-------GEEEHH-----H---HHHHHCSSTTCGGGHHHHHHHH---
T ss_pred             CccccCCCCEEEEEECCCCCCHHHHHHHHccCC-------eEEccH-----H---HHHHhcCcccchhhHHHHHHHH---
Confidence            689999999999999999999999999964311       112111     1   1267777653110 00111111   


Q ss_pred             HhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChh---------
Q psy8250          95 ARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTL---------  164 (212)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~---------  164 (212)
                                    .. ........|.....+. ....|+|||||++||||++.+|++|+|||||+ ||+.         
T Consensus        63 --------------~~-~~~~~~~~g~~~~~~~-~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~  126 (171)
T 4gp7_A           63 --------------HY-IVSKRLQLGKLTVVDA-TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQV  126 (171)
T ss_dssp             --------------HH-HHHHHHHTTCCEEEES-CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCC
T ss_pred             --------------HH-HHHHHHhCCCeEEEEC-CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCC
Confidence                          11 1122233455544443 34569999999999999999999999999999 9999         


Q ss_pred             -------hHHHHHHHHHHHHhhc-----CcchHHHHHH
Q psy8250         165 -------TVHEHMTLMARLKMDR-----NLHHVERART  190 (212)
Q Consensus       165 -------~~~~~~~~l~~l~~~~-----~~h~~~~~~~  190 (212)
                             ...+++++|+++++++     .+|+++++..
T Consensus       127 ~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~  164 (171)
T 4gp7_A          127 EEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEE  164 (171)
T ss_dssp             CHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHH
T ss_pred             CHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhh
Confidence                   5588899988887664     3799998754

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.94  E-value=8.3e-32  Score=227.67  Aligned_cols=156  Identities=13%  Similarity=0.089  Sum_probs=118.4

Q ss_pred             cccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCC
Q psy8250           2 ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLT   81 (212)
Q Consensus         2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~   81 (212)
                      +++++.|+ ..+|+++||+|++|++++|+||||||||||+++|+|++    +|+|.               +|++|++.+
T Consensus       105 ~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~----~G~I~---------------~~v~q~~~l  164 (305)
T 2v9p_A          105 QNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL----GGSVL---------------SFANHKSHF  164 (305)
T ss_dssp             TTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH----TCEEE---------------CGGGTTSGG
T ss_pred             EEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc----CceEE---------------EEecCcccc
Confidence            67888897 67999999999999999999999999999999999987    68873               567888877


Q ss_pred             CCCCCHHH-HHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC
Q psy8250          82 VDTLTVHE-HMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT  160 (212)
Q Consensus        82 ~~~ltv~e-~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~  160 (212)
                      +.. |+++ |+.+..      ....     .+.++++.+ +....+  +..||||||||   ||||+.+|++||    |+
T Consensus       165 f~~-ti~~~ni~~~~------~~~~-----~~~~~i~~~-L~~gld--g~~LSgGqkQR---ARAll~~p~iLl----Ts  222 (305)
T 2v9p_A          165 WLA-SLADTRAALVD------DATH-----ACWRYFDTY-LRNALD--GYPVSIDRKHK---AAVQIKAPPLLV----TS  222 (305)
T ss_dssp             GGG-GGTTCSCEEEE------EECH-----HHHHHHHHT-TTGGGG--TCCEECCCSSC---CCCEECCCCEEE----EE
T ss_pred             ccc-cHHHHhhccCc------cccH-----HHHHHHHHH-hHccCC--ccCcCHHHHHH---HHHHhCCCCEEE----EC
Confidence            764 7775 665421      1111     344556654 443334  78999999999   999999999999    88


Q ss_pred             -CChhhHHHHHHHHHHHHhhcCcchHHHHH--HHHHHHHhcCeeecCCchhh
Q psy8250         161 -VDTLTVHEHMTLMARLKMDRNLHHVERAR--TVDALLKELGLLKCRPADEL  209 (212)
Q Consensus       161 -lD~~~~~~~~~~l~~l~~~~~~h~~~~~~--~~~~~l~~g~~~~~~~~~~~  209 (212)
                       ||+.+...+..         .+|+++.+.  +.. +|++|++++.|+++++
T Consensus       223 ~LD~~~~~~i~~---------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el  264 (305)
T 2v9p_A          223 NIDVQAEDRYLY---------LHSRVQTFRFEQPC-TDESGEQPFNITDADW  264 (305)
T ss_dssp             SSCSTTCGGGGG---------GTTTEEEEECCCCC-CCC---CCCCCCHHHH
T ss_pred             CCCHHHHHHHHH---------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH
Confidence             99999988863         266654332  235 8889999999998876

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.94  E-value=6.8e-27  Score=202.50  Aligned_cols=77  Identities=17%  Similarity=0.184  Sum_probs=64.5

Q ss_pred             CCCCCCCChHHHHHHHHHHHHh------hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHHH-
Q psy8250         126 NSVLNVLSGGERKRVALAVQTI------IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTVD-  192 (212)
Q Consensus       126 ~~~~~~LSgGqrqRv~lA~al~------~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~~-  192 (212)
                      ++++.+||||||||++||+||+      .+|++|||||||+ ||+.++..++++|++++.++     ++||++.+..++ 
T Consensus       274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~  353 (365)
T 3qf7_A          274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDR  353 (365)
T ss_dssp             EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSC
T ss_pred             CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCE
Confidence            5678899999999999999999      6999999999999 99999999999999997653     379998754333 


Q ss_pred             -HHHHhcCeee
Q psy8250         193 -ALLKELGLLK  202 (212)
Q Consensus       193 -~~l~~g~~~~  202 (212)
                       .+|++|++++
T Consensus       354 ~~~l~~G~i~~  364 (365)
T 3qf7_A          354 KLRITGGVVVN  364 (365)
T ss_dssp             EEEEETTEEC-
T ss_pred             EEEEECCEEEe
Confidence             3567787654

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.93  E-value=1.1e-29  Score=215.82  Aligned_cols=121  Identities=12%  Similarity=0.076  Sum_probs=98.8

Q ss_pred             EcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHHHHHHhhhcc
Q psy8250          21 AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMD  100 (212)
Q Consensus        21 i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~  100 (212)
                      +++|+++||+||||||||||+++|+|++.| ..|.              +.+++++|++.+++. |+.+|+.+...    
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~-~~G~--------------~~v~~v~qd~~~~~~-t~~e~~~~~~~----  146 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR-WDHH--------------PRVDLVTTDGFLYPN-AELQRRNLMHR----  146 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHHHT-STTC--------------CCEEEEEGGGGBCCH-HHHHHTTCTTC----
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhccc-cCCC--------------CeEEEEecCccCCcc-cHHHHHHHHHh----
Confidence            799999999999999999999999999988 4553              348999999988887 99999764221    


Q ss_pred             cCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CC
Q psy8250         101 RNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VD  162 (212)
Q Consensus       101 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD  162 (212)
                      .+.+.......+.++++.++ ....+.++..||+||+||+++|+|++.+|++||+|||+. +|
T Consensus       147 ~g~~~~~d~~~~~~~L~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d  208 (312)
T 3aez_A          147 KGFPESYNRRALMRFVTSVK-SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQT  208 (312)
T ss_dssp             TTSGGGBCHHHHHHHHHHHH-TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCC
T ss_pred             cCCChHHHHHHHHHHHHHhC-CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCC
Confidence            11122223456778888887 555567788999999999999999999999999999999 76

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.92  E-value=1.3e-28  Score=205.17  Aligned_cols=135  Identities=14%  Similarity=0.155  Sum_probs=88.8

Q ss_pred             EEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCH
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHH  105 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~  105 (212)
                      .++|+||||||||||+|+|+|+..| ++|+|.++|.++.....++.++|++|++.+++.+||.||+.|+.......    
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~~-~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~----   78 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQVS-RKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNEN----   78 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC-------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTT----
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC-CCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHH----
Confidence            4899999999999999999999998 69999999998865555678999999999999999999998865432111    


Q ss_pred             HHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHh
Q psy8250         106 VERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKM  178 (212)
Q Consensus       106 ~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~  178 (212)
                        ..+.+.+++.    ....+..+.+|||||+||+++|||++.   ++++|||+. +|+..    .++++.++.
T Consensus        79 --~~~~i~~~~~----~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~  139 (270)
T 3sop_A           79 --CWEPIEKYIN----EQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK  139 (270)
T ss_dssp             --CSHHHHHHHH----HHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT
T ss_pred             --HHHHHHHHHH----HHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh
Confidence              1112223332    334556678999999999999999875   999999999 99887    344445543

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.92  E-value=6.9e-26  Score=192.91  Aligned_cols=64  Identities=20%  Similarity=0.198  Sum_probs=54.7

Q ss_pred             ccCCCCCCCChHHHHHHHHHHHHh----hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHH
Q psy8250         124 CKNSVLNVLSGGERKRVALAVQTI----IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVER  187 (212)
Q Consensus       124 ~~~~~~~~LSgGqrqRv~lA~al~----~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~  187 (212)
                      ..+.++.+||+|||||++||+||+    .+|+++||||||+ ||+.....++++|+++....    ++|+.+.
T Consensus       212 ~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~  284 (322)
T 1e69_A          212 RRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIV  284 (322)
T ss_dssp             SCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTG
T ss_pred             cccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHH
Confidence            356678899999999999999998    5789999999999 99999999999999985322    3798653

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.92  E-value=9.2e-28  Score=203.04  Aligned_cols=144  Identities=16%  Similarity=0.141  Sum_probs=114.0

Q ss_pred             cccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-------cc--cceEEEEc
Q psy8250           6 PLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-------LM--VKVSGFVP   76 (212)
Q Consensus         6 ~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-------~~--~~~i~~v~   76 (212)
                      ..++....++.+||++++|++++|+||||||||||+++|+|++.| .+|+|.+.|.++...       .+  +..++|++
T Consensus        82 ~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~-~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~  160 (302)
T 3b9q_A           82 EMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN-EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVV  160 (302)
T ss_dssp             HHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEEC
T ss_pred             HHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH-cCCeEEEEeecccchhHHHHHHHHHHhcCceEEE
Confidence            334443344678999999999999999999999999999999998 699999999887532       12  23589999


Q ss_pred             CCCC-CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCC--eE
Q psy8250          77 QHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQS--GF  153 (212)
Q Consensus        77 Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~--ll  153 (212)
                      |++. +++.+++++++.++....    ..        ..+++.+|+.+..++++.+||   |||++|||||+.+|+  +|
T Consensus       161 q~~~~~~~~~~v~e~l~~~~~~~----~d--------~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lL  225 (302)
T 3b9q_A          161 AEGDKAKAATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILL  225 (302)
T ss_dssp             CC--CCCHHHHHHHHHHHHHHTT----CS--------EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEE
T ss_pred             ecCCccCHHHHHHHHHHHHHHcC----Cc--------chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEE
Confidence            9988 888889999998753211    00        134566788777778888999   999999999999999  99


Q ss_pred             EecCCCC-CChhhH
Q psy8250         154 VPQHDLT-VDTLTV  166 (212)
Q Consensus       154 ilDEPt~-lD~~~~  166 (212)
                      +|| ||+ +|+..+
T Consensus       226 vLD-ptsglD~~~~  238 (302)
T 3b9q_A          226 VLD-GNTGLNMLPQ  238 (302)
T ss_dssp             EEE-GGGGGGGHHH
T ss_pred             EEe-CCCCcCHHHH
Confidence            999 999 998755

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.91  E-value=1e-28  Score=197.55  Aligned_cols=166  Identities=14%  Similarity=0.068  Sum_probs=110.0

Q ss_pred             cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHH
Q psy8250          11 TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEH   90 (212)
Q Consensus        11 ~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~   90 (212)
                      ..+++|  .++++|++++|+||||||||||+|+|+|+++. ..+.+.+.+.+.. ...++.++|+||++..|+.+++.++
T Consensus         9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~-i~~~~~~~~~~~~-~~~~~~i~~~~q~~~~~~~~~~~~~   84 (207)
T 1znw_A            9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN-LHFSVSATTRAPR-PGEVDGVDYHFIDPTRFQQLIDQGE   84 (207)
T ss_dssp             ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT-CEECCCEESSCCC-TTCCBTTTBEECCHHHHHHHHHTTC
T ss_pred             CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc-eEEcccccccCCc-ccccCCCeeEecCHHHHHHHHhcCC
Confidence            346777  68999999999999999999999999998853 2332222111111 1224568999999877776666665


Q ss_pred             HHHHHhhhc---ccCCCHHHHHHHHHHH------HHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-
Q psy8250          91 MTLMARLKM---DRNLHHVERARTVDAL------LKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-  160 (212)
Q Consensus        91 l~~~~~~~~---~~~~~~~~~~~~~~~~------l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-  160 (212)
                      +..+.....   ..+.+..+..+++.+.      ++.+|+....++++..||           ||+.+|++++||||++ 
T Consensus        85 l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS-----------~l~~~p~~~~LDep~~~  153 (207)
T 1znw_A           85 LLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT-----------VFLAPPSWQDLQARLIG  153 (207)
T ss_dssp             EEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE-----------EEEECSCHHHHHHHHHT
T ss_pred             ceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE-----------EEEECCCHHHHHHHHHh
Confidence            432111110   0122344455556665      667777777788888998           8999999999999999 


Q ss_pred             C----ChhhHHHHHHHHHHHHhhc------CcchHHHHHHH
Q psy8250         161 V----DTLTVHEHMTLMARLKMDR------NLHHVERARTV  191 (212)
Q Consensus       161 l----D~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~  191 (212)
                      +    |+..++++++++++++.+.      ++||++++...
T Consensus       154 l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~  194 (207)
T 1znw_A          154 RGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAE  194 (207)
T ss_dssp             TSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHH
Confidence            7    6778999999999997542      37999988763

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.91  E-value=1.2e-26  Score=182.07  Aligned_cols=142  Identities=15%  Similarity=0.089  Sum_probs=94.5

Q ss_pred             EEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRN  102 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~  102 (212)
                      +++|+||||||||||+++|+|++.      |.++|.....   ...++.+||++|++      ++.+++ + ..+.    
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~----   63 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-F-SSKF----   63 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-E-EETT----
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-H-Hhhc----
Confidence            689999999999999999999874      2244433211   12356789999975      222221 0 0000    


Q ss_pred             CCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHH-----HhhCCCeEEecC--CCC-CChhhHHHHHHHHH
Q psy8250         103 LHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQ-----TIIVQSGFVPQH--DLT-VDTLTVHEHMTLMA  174 (212)
Q Consensus       103 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~a-----l~~~p~llilDE--Pt~-lD~~~~~~~~~~l~  174 (212)
                      .                .-.+..++++.+||||||||++||+|     ++.+|+++||||  ||+ +|+..++.+.+++.
T Consensus        64 ~----------------~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~  127 (178)
T 1ye8_A           64 F----------------TSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMH  127 (178)
T ss_dssp             C----------------CCSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHT
T ss_pred             C----------------CccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHh
Confidence            0                00135678889999999999999996     999999999999  999 99999999999887


Q ss_pred             HHHhh--cCc---chHHHHHHHHHHHHhcCeee
Q psy8250         175 RLKMD--RNL---HHVERARTVDALLKELGLLK  202 (212)
Q Consensus       175 ~l~~~--~~~---h~~~~~~~~~~~l~~g~~~~  202 (212)
                      +....  ..+   |+.+.+..... -.+|+++.
T Consensus       128 ~~~~~~i~~~H~~h~~~~~~~i~~-r~~~~i~~  159 (178)
T 1ye8_A          128 DPNVNVVATIPIRDVHPLVKEIRR-LPGAVLIE  159 (178)
T ss_dssp             CTTSEEEEECCSSCCSHHHHHHHT-CTTCEEEE
T ss_pred             cCCCeEEEEEccCCCchHHHHHHh-cCCcEEEE
Confidence            62110  013   57666643211 12466654

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.91  E-value=3.5e-29  Score=202.27  Aligned_cols=173  Identities=12%  Similarity=0.031  Sum_probs=109.0

Q ss_pred             CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc----cccceEEEEcCCCCCCCCC
Q psy8250          10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN----LMVKVSGFVPQHDLTVDTL   85 (212)
Q Consensus        10 ~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~----~~~~~i~~v~Q~~~~~~~l   85 (212)
                      .+..|+||||++++|++++|+||||||||||+++|+|++ |   |+|.+ |.+++..    ..++.++|+||++..|+.+
T Consensus         9 ~~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p---G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~   83 (218)
T 1z6g_A            9 HHSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P---NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDK   83 (218)
T ss_dssp             -------------CCCCEEEECSTTSSHHHHHHHHHHHS-T---TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHH
T ss_pred             ccccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C---CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHh
Confidence            345799999999999999999999999999999999987 4   88999 7765322    1345689999987654432


Q ss_pred             CH-HHHHHHHHhhhc-ccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHH-----HHHHhhCCCeEEecCC
Q psy8250          86 TV-HEHMTLMARLKM-DRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVAL-----AVQTIIVQSGFVPQHD  158 (212)
Q Consensus        86 tv-~e~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~l-----A~al~~~p~llilDEP  158 (212)
                      +. .+++.+. .+.. ..+.+    ...++++++...+. ..+   .+|||||+||++|     |++|+..|++++||||
T Consensus        84 ~~~~~~l~~~-~~~~~~~g~~----~~~i~~~l~~~~~~-il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~  154 (218)
T 1z6g_A           84 LKNEDFLEYD-NYANNFYGTL----KSEYDKAKEQNKIC-LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSR  154 (218)
T ss_dssp             HHTTCEEEEE-EETTEEEEEE----HHHHHHHHHTTCEE-EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHH
T ss_pred             hhccchhhhh-hcccccCCCc----HHHHHHHHhCCCcE-EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHH
Confidence            10 0111000 0000 00111    12355666654332 122   5789999999999     8999999999999999


Q ss_pred             CC-CChhhHHHHHHHHHHHHhh------c------CcchHHHHHH-HHHHHH
Q psy8250         159 LT-VDTLTVHEHMTLMARLKMD------R------NLHHVERART-VDALLK  196 (212)
Q Consensus       159 t~-lD~~~~~~~~~~l~~l~~~------~------~~h~~~~~~~-~~~~l~  196 (212)
                      ++ +|..+...+.+.+.++..+      .      .+|+++++.. ...++.
T Consensus       155 ~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ii~  206 (218)
T 1z6g_A          155 LLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYLL  206 (218)
T ss_dssp             HHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHHHH
T ss_pred             HHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHHHH
Confidence            99 9999988888888766432      1      2688887755 344544

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.91  E-value=1.8e-26  Score=204.02  Aligned_cols=181  Identities=14%  Similarity=0.084  Sum_probs=139.9

Q ss_pred             CcccccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCE---eCCc--------ccc
Q psy8250           1 METFHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGL---EVEK--------NLM   68 (212)
Q Consensus         1 ~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~---~~~~--------~~~   68 (212)
                      ++++++.|+ +..+++++ |++.+|++++|+||||||||||+++|+|+..| ++|.|.++|+   ++..        ..+
T Consensus       134 ~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~-~~G~i~~~G~r~~ev~~~~~~~~~~~~l  211 (438)
T 2dpy_A          134 RTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRA-DVIVVGLIGERGREVKDFIENILGPDGR  211 (438)
T ss_dssp             SCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCC-SEEEEEEESCCHHHHHHHHHTTTHHHHH
T ss_pred             EeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCC-CeEEEEEeceecHHHHHHHHhhcccccc
Confidence            368899997 67899999 99999999999999999999999999999998 6999999998   4432        124


Q ss_pred             cceEEEEcCC-CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHh
Q psy8250          69 VKVSGFVPQH-DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTI  147 (212)
Q Consensus        69 ~~~i~~v~Q~-~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~  147 (212)
                      ++.++|++|. ..+++.+++.+|+.+.+......       ..         ......+ .+..||+|| ||++||   +
T Consensus       212 ~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~-------~~---------~v~~~ld-~l~~lS~g~-qrvslA---l  270 (438)
T 2dpy_A          212 ARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDR-------GQ---------HVLLIMD-SLTRYAMAQ-REIALA---I  270 (438)
T ss_dssp             HTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTT-------TC---------EEEEEEE-CHHHHHHHH-HHHHHH---T
T ss_pred             CceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhC-------CC---------CHHHHHH-hHHHHHHHH-HHHHHH---h
Confidence            5779999995 45567778888887755432100       00         0111122 256799999 999999   8


Q ss_pred             hCCCeEEecCCCC-CChhhHHHHHHHHHHHHh---h-c----------CcchHH-HHHHHHHHHHhcCeeecCCchhhh
Q psy8250         148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKM---D-R----------NLHHVE-RARTVDALLKELGLLKCRPADELN  210 (212)
Q Consensus       148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~---~-~----------~~h~~~-~~~~~~~~l~~g~~~~~~~~~~~~  210 (212)
                      .+|++      |+ +|+.....+.+++.++..   + +          .+||++ .+++...+|.+|+++.+++++++.
T Consensus       271 ~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~~~iad~v~~l~dG~Ivl~~~~~~~~  343 (438)
T 2dpy_A          271 GEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAG  343 (438)
T ss_dssp             TCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSCCHHHHHHHHHSSEEEEECHHHHHTT
T ss_pred             CCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCccchhhceEEEEeCcEEEEeCCHHHcc
Confidence            88887      88 999999999999999865   2 2          159986 333455688899999999888765

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.91  E-value=2.5e-25  Score=190.23  Aligned_cols=126  Identities=14%  Similarity=0.065  Sum_probs=97.4

Q ss_pred             ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCCCCCCCCCHHHH
Q psy8250          12 NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEH   90 (212)
Q Consensus        12 ~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~~~~~~ltv~e~   90 (212)
                      .+++++||.+++|++++|+||||||||||+++|+|+++| ++|.|.++|.+.... ..++.++++++             
T Consensus       159 ~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~~~~~~~~i~~~~g-------------  224 (330)
T 2pt7_A          159 QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIVFKHHKNYTQLFFG-------------  224 (330)
T ss_dssp             HHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCCCSSCSSEEEEECB-------------
T ss_pred             HHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeeccccccchhEEEEEeC-------------
Confidence            378999999999999999999999999999999999998 699999998642111 12333444420             


Q ss_pred             HHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCCCChhhHHHHH
Q psy8250          91 MTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHM  170 (212)
Q Consensus        91 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~lD~~~~~~~~  170 (212)
                                                                 |||+||++||+||..+|++||+|||++      .+++
T Consensus       225 -------------------------------------------gg~~~r~~la~aL~~~p~ilildE~~~------~e~~  255 (330)
T 2pt7_A          225 -------------------------------------------GNITSADCLKSCLRMRPDRIILGELRS------SEAY  255 (330)
T ss_dssp             -------------------------------------------TTBCHHHHHHHHTTSCCSEEEECCCCS------THHH
T ss_pred             -------------------------------------------CChhHHHHHHHHhhhCCCEEEEcCCCh------HHHH
Confidence                                                       899999999999999999999999998      2356


Q ss_pred             HHHHHHHhhcC-----cchHHHHHHH--HHHHHhcCe
Q psy8250         171 TLMARLKMDRN-----LHHVERARTV--DALLKELGL  200 (212)
Q Consensus       171 ~~l~~l~~~~~-----~h~~~~~~~~--~~~l~~g~~  200 (212)
                      ++|+.+...+.     +|+.+....+  ...|.+|..
T Consensus       256 ~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~~  292 (330)
T 2pt7_A          256 DFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNS  292 (330)
T ss_dssp             HHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTSG
T ss_pred             HHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCCc
Confidence            67777765442     5887633333  346777764

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.90  E-value=2.7e-26  Score=197.96  Aligned_cols=135  Identities=16%  Similarity=0.124  Sum_probs=112.2

Q ss_pred             eeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-------cc--cceEEEEcCCCC-CCCC
Q psy8250          15 ESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-------LM--VKVSGFVPQHDL-TVDT   84 (212)
Q Consensus        15 ~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-------~~--~~~i~~v~Q~~~-~~~~   84 (212)
                      ..+||++++|++++|+||||||||||++.|+|++.| .+|+|.+.|.++...       .+  +..++|++|++. +++.
T Consensus       148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~-~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~  226 (359)
T 2og2_A          148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN-EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA  226 (359)
T ss_dssp             CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHH
T ss_pred             CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccc-cCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChh
Confidence            578999999999999999999999999999999988 699999999887532       11  346899999988 8888


Q ss_pred             CCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCC--eEEecCCCC-C
Q psy8250          85 LTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQS--GFVPQHDLT-V  161 (212)
Q Consensus        85 ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~--llilDEPt~-l  161 (212)
                      +++++++.++....    ..        ..+++.+|+.+..++++.+||   +||++|||||+.+|+  +|+|| ||+ +
T Consensus       227 ~tv~e~l~~~~~~~----~d--------~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttgl  290 (359)
T 2og2_A          227 TVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGL  290 (359)
T ss_dssp             HHHHHHHHHHHHTT----CS--------EEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGG
T ss_pred             hhHHHHHHHHHhCC----CH--------HHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCC
Confidence            89999998753211    00        124556788777777888999   999999999999999  99999 999 9


Q ss_pred             ChhhH
Q psy8250         162 DTLTV  166 (212)
Q Consensus       162 D~~~~  166 (212)
                      |+.++
T Consensus       291 D~~~~  295 (359)
T 2og2_A          291 NMLPQ  295 (359)
T ss_dssp             GGHHH
T ss_pred             CHHHH
Confidence            98765

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.88  E-value=5.1e-25  Score=180.45  Aligned_cols=140  Identities=14%  Similarity=0.041  Sum_probs=91.0

Q ss_pred             ccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCC
Q psy8250           7 LFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLT   86 (212)
Q Consensus         7 ~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~lt   86 (212)
                      +-+++.+|+|+||++++|+++||+||||||||||+++|+|++     |.+.++       ..++.++|++|++ +++.+|
T Consensus         8 ~~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-----G~~~~~-------~~~~~i~~v~~d~-~~~~l~   74 (245)
T 2jeo_A            8 SSGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-----GQNEVE-------QRQRKVVILSQDR-FYKVLT   74 (245)
T ss_dssp             ---------------CCSEEEEEECSTTSSHHHHHHHHHHHH-----TGGGSC-------GGGCSEEEEEGGG-GBCCCC
T ss_pred             cCCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-----chhccc-------ccCCceEEEeCCc-CccccC
Confidence            346678999999999999999999999999999999999965     333333       2456789999985 677889


Q ss_pred             HHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CCh
Q psy8250          87 VHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDT  163 (212)
Q Consensus        87 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~  163 (212)
                      +.+++.+........ .+.......+.+.++.+  .+..+.++..||+||+||+.+ ++++.+|+++|+|||.. .+.
T Consensus        75 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~L~~l--~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~  148 (245)
T 2jeo_A           75 AEQKAKALKGQYNFD-HPDAFDNDLMHRTLKNI--VEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQ  148 (245)
T ss_dssp             HHHHHHHHTTCCCTT-SGGGBCHHHHHHHHHHH--HTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSH
T ss_pred             HhHhhhhhccCCCCC-CcccccHHHHHHHHHHH--HCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccH
Confidence            999987643321110 01111123344555543  345567789999999999988 58889999999999998 665

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.87  E-value=1.3e-23  Score=180.64  Aligned_cols=181  Identities=17%  Similarity=0.095  Sum_probs=128.1

Q ss_pred             CcccccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc----------cccc
Q psy8250           1 METFHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK----------NLMV   69 (212)
Q Consensus         1 ~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~----------~~~~   69 (212)
                      .+++++.|+ +..+++++ |+|.+|++++|+||||||||||+++|+|+..| +.|.|.+.|++...          ..+.
T Consensus        48 ~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~-~~g~i~~~G~~~~ev~~~i~~~~~~~~~  125 (347)
T 2obl_A           48 RQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASA-DIIVLALIGERGREVNEFLALLPQSTLS  125 (347)
T ss_dssp             CCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCC-SEEEEEEESCCHHHHHHHHTTSCHHHHT
T ss_pred             ecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCC-CEEEEEEecccHHHHHHHHHhhhhhhhh
Confidence            367899997 77899999 99999999999999999999999999999998 69999998865211          1133


Q ss_pred             ceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-ccCCCCCCCChHHHHHHHHHHHHhh
Q psy8250          70 KVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQTII  148 (212)
Q Consensus        70 ~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqrqRv~lA~al~~  148 (212)
                      +.+.+++|.+.     +..+.+.....            ...+.+.+...+..- ..-..+..||+|| ||+++|   +.
T Consensus       126 ~~v~~~~~~~~-----~~~~r~~~~~~------------~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~  184 (347)
T 2obl_A          126 KCVLVVTTSDR-----PALERMKAAFT------------ATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SG  184 (347)
T ss_dssp             TEEEEEECTTS-----CHHHHHHHHHH------------HHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TT
T ss_pred             ceEEEEECCCC-----CHHHHHHHHHH------------HHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cC
Confidence            45778877432     23333221110            001111111111110 0114577899999 899999   57


Q ss_pred             CCCeEEecCCCC-CChhhHHHHHHHHHHHHh-h-c----------CcchHH-HHHHHHHHHHhcCeeecCCchhhh
Q psy8250         149 VQSGFVPQHDLT-VDTLTVHEHMTLMARLKM-D-R----------NLHHVE-RARTVDALLKELGLLKCRPADELN  210 (212)
Q Consensus       149 ~p~llilDEPt~-lD~~~~~~~~~~l~~l~~-~-~----------~~h~~~-~~~~~~~~l~~g~~~~~~~~~~~~  210 (212)
                      +|++      |+ +|+.....+.+++.++.. + +          .+||++ .+++...++.+|+++.++++++++
T Consensus       185 ~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~~~i~d~v~~i~dG~Ivl~~~l~~~~  254 (347)
T 2obl_A          185 EPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVNDPIGDEVRSILDGHIVLTRELAEEN  254 (347)
T ss_dssp             CCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCCCHHHHHHHHHCSEEEEBCHHHHTTT
T ss_pred             CCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCCChhhhheEEeeCcEEEEeCCHHHcC
Confidence            7776      77 999999999999999864 2 2          159886 334556789999999999888764

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.85  E-value=7.1e-25  Score=185.21  Aligned_cols=157  Identities=14%  Similarity=0.076  Sum_probs=80.5

Q ss_pred             cccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcC-CCCCCceEEEECCEeCCcccccceEEEEcCCCC
Q psy8250           2 ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQR-IQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL   80 (212)
Q Consensus         2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~-~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~   80 (212)
                      .+|++.|+++.++++++|+|      +|+||||||||||+++|+|. ..| .+| |.++|.++......+.+++++|.+.
T Consensus         2 ~~l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~-~~g-i~~~g~~~~~t~~~~~~~~~~q~~~   73 (301)
T 2qnr_A            2 SNLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYP-ERV-ISGAAEKIERTVQIEASTVEIEERG   73 (301)
T ss_dssp             ----------------CEEE------EEEEETTSSHHHHHHHHHC--------------------------CEEEEC---
T ss_pred             CCCcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccC-CCC-cccCCcccCCcceEeeEEEEecCCC
Confidence            47899999999999999998      99999999999999999997 677 588 8888877643222345789999888


Q ss_pred             CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC
Q psy8250          81 TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT  160 (212)
Q Consensus        81 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~  160 (212)
                      ....++++|+..++.....     .......+..+      .+..+.++.++|||||||+.+|||++    ++++||||+
T Consensus        74 ~~~~ltv~Dt~g~~~~~~~-----~e~~~~l~~~l------~~~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~  138 (301)
T 2qnr_A           74 VKLRLTVVDTPGYGDAINC-----RDCFKTIISYI------DEQFERYLHDESGLNRRHIIDNRVHC----CFYFISPFG  138 (301)
T ss_dssp             CCEEEEEEEEC----------------CTTHHHHH------HHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSS
T ss_pred             cccCcchhhhhhhhhhcCc-----HHHHHHHHHHH------HHHHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcc
Confidence            7788899988776533210     00000111111      22345677899999999999999986    999999986


Q ss_pred             --CChhhHHHHHHHHHHHHhhc------CcchH
Q psy8250         161 --VDTLTVHEHMTLMARLKMDR------NLHHV  185 (212)
Q Consensus       161 --lD~~~~~~~~~~l~~l~~~~------~~h~~  185 (212)
                        +|+...    ++++++....      +.||+
T Consensus       139 ~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl  167 (301)
T 2qnr_A          139 HGLKPLDV----AFMKAIHNKVNIVPVIAKADT  167 (301)
T ss_dssp             SSCCHHHH----HHHHHHTTTSCEEEEECCGGG
T ss_pred             cCCCHHHH----HHHHHHHhcCCEEEEEEeCCC
Confidence              899763    5666665431      26886

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=99.85  E-value=2.1e-22  Score=173.78  Aligned_cols=83  Identities=12%  Similarity=0.022  Sum_probs=66.0

Q ss_pred             CCCCC-CCChHHHHHHHHHHHHh---------hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc--CcchHHHHHHHH
Q psy8250         126 NSVLN-VLSGGERKRVALAVQTI---------IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR--NLHHVERARTVD  192 (212)
Q Consensus       126 ~~~~~-~LSgGqrqRv~lA~al~---------~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~--~~h~~~~~~~~~  192 (212)
                      ++++. .||+|||||++||++|+         .+|++|||||||+ ||+..+..+++++.++...-  .+|. +..+...
T Consensus       259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~~~~~i  337 (359)
T 2o5v_A          259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-APGAALT  337 (359)
T ss_dssp             TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CTTCSEE
T ss_pred             CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cccCCEE
Confidence            44556 79999999999999999         7999999999999 99999999999998875211  2563 3311112


Q ss_pred             HHHHhcCeeecCCchhh
Q psy8250         193 ALLKELGLLKCRPADEL  209 (212)
Q Consensus       193 ~~l~~g~~~~~~~~~~~  209 (212)
                      .++++|+++..|+++++
T Consensus       338 ~~l~~G~i~~~g~~~~~  354 (359)
T 2o5v_A          338 LRAQAGRFTPVADEEMQ  354 (359)
T ss_dssp             EEEETTEEEECCCTTTS
T ss_pred             EEEECCEEEecCCHHHH
Confidence            35779999999999876

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=99.83  E-value=2.6e-22  Score=192.58  Aligned_cols=151  Identities=15%  Similarity=0.086  Sum_probs=104.4

Q ss_pred             ccccc-CCcceeeeeEEEEcC-------CcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEE-E
Q psy8250           4 FHPLF-GDTNYKESLSGIAES-------GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSG-F   74 (212)
Q Consensus         4 l~~~~-~~~~~l~~vs~~i~~-------Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~-~   74 (212)
                      +++.| ++..+++|++|++++       |++++|+||||||||||||+| |++.+                  ..++| |
T Consensus       761 l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~------------------~aqiG~~  821 (1022)
T 2o8b_B          761 ITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV------------------MAQMGCY  821 (1022)
T ss_dssp             ------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH------------------HHTTTCC
T ss_pred             EEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH------------------HhheeEE
Confidence            67778 667899999999987       999999999999999999999 88753                  11244 8


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEE
Q psy8250          75 VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFV  154 (212)
Q Consensus        75 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~lli  154 (212)
                      |||++.   .+++.+++.                        ..+|+.+......+.+|+++++ +++|++++.+|+++|
T Consensus       822 Vpq~~~---~l~v~d~I~------------------------~rig~~d~~~~~~stf~~em~~-~a~al~la~~~sLlL  873 (1022)
T 2o8b_B          822 VPAEVC---RLTPIDRVF------------------------TRLGASDRIMSGESTFFVELSE-TASILMHATAHSLVL  873 (1022)
T ss_dssp             EESSEE---EECCCSBEE------------------------EECC---------CHHHHHHHH-HHHHHHHCCTTCEEE
T ss_pred             eccCcC---CCCHHHHHH------------------------HHcCCHHHHhhchhhhHHHHHH-HHHHHHhCCCCcEEE
Confidence            998753   345544331                        0122222233345678888775 999999999999999


Q ss_pred             ecCCCC-CChhhH-HHHHHHHHHHHhh-c-----CcchHHHHHHHH--HHHHhcCee
Q psy8250         155 PQHDLT-VDTLTV-HEHMTLMARLKMD-R-----NLHHVERARTVD--ALLKELGLL  201 (212)
Q Consensus       155 lDEPt~-lD~~~~-~~~~~~l~~l~~~-~-----~~h~~~~~~~~~--~~l~~g~~~  201 (212)
                      ||||++ +|+... ..++.+|.+++++ +     .||+.+.+....  ..+.+|++.
T Consensus       874 LDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~~g~~~  930 (1022)
T 2o8b_B          874 VDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMA  930 (1022)
T ss_dssp             EECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEEEEEEE
T ss_pred             EECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceeecCeEE
Confidence            999999 999885 5578999998765 3     289999886532  123367665

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=99.83  E-value=1.8e-21  Score=161.20  Aligned_cols=102  Identities=20%  Similarity=0.224  Sum_probs=76.4

Q ss_pred             ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCC-ceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHH
Q psy8250          12 NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDV-DGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEH   90 (212)
Q Consensus        12 ~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~-~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~   90 (212)
                      .+|+++|  +++|++++|+||||||||||+++|+|++.| . +|+|.++|.++         +|++|.+..+        
T Consensus        15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~-~~~G~I~~~g~~i---------~~~~~~~~~~--------   74 (261)
T 2eyu_A           15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQ-TKSYHIITIEDPI---------EYVFKHKKSI--------   74 (261)
T ss_dssp             THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHH-HCCCEEEEEESSC---------CSCCCCSSSE--------
T ss_pred             HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCC-CCCCEEEEcCCcc---------eeecCCccee--------
Confidence            5899999  999999999999999999999999999887 5 89999988765         2333322100        


Q ss_pred             HHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCCCChhhHHHHH
Q psy8250          91 MTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHM  170 (212)
Q Consensus        91 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~lD~~~~~~~~  170 (212)
                            ..  .               ..+|+..      ..|      |++||+||..+|++|++|||+  |+.+...++
T Consensus        75 ------v~--q---------------~~~gl~~------~~l------~~~la~aL~~~p~illlDEp~--D~~~~~~~l  117 (261)
T 2eyu_A           75 ------VN--Q---------------REVGEDT------KSF------ADALRAALREDPDVIFVGEMR--DLETVETAL  117 (261)
T ss_dssp             ------EE--E---------------EEBTTTB------SCH------HHHHHHHHHHCCSEEEESCCC--SHHHHHHHH
T ss_pred             ------ee--H---------------HHhCCCH------HHH------HHHHHHHHhhCCCEEEeCCCC--CHHHHHHHH
Confidence                  00  0               0223321      122      899999999999999999999  887765443

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=99.82  E-value=1.1e-21  Score=164.46  Aligned_cols=154  Identities=12%  Similarity=0.038  Sum_probs=99.1

Q ss_pred             cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCce-EEEECCEeCCcccccceEEEEcCCCCCCCCCCHHH
Q psy8250          11 TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDG-QILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHE   89 (212)
Q Consensus        11 ~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G-~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e   89 (212)
                      ..+|+++++.+++|++++|+||||||||||++.|+|...| .+| .|.+.+.+.....+.+.+.++++...    +++.+
T Consensus        22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~-~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~~   96 (296)
T 1cr0_A           22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGT-AMGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQSD   96 (296)
T ss_dssp             CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHH-TSCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGCH
T ss_pred             HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH-HcCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhcc
Confidence            4589999999999999999999999999999999999887 467 67554444433223333333333321    12333


Q ss_pred             HHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHH-HHHHHHHHHHhhCCCeEEecCCCC-CC-----
Q psy8250          90 HMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGE-RKRVALAVQTIIVQSGFVPQHDLT-VD-----  162 (212)
Q Consensus        90 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq-rqRv~lA~al~~~p~llilDEPt~-lD-----  162 (212)
                      ++.... +      ...+..+.+.++++..++.  ....+..+|.++ +||+. |+++..+|+++|+|||++ ++     
T Consensus        97 ~l~~~~-~------~~~~~~~~~~~~l~~~~l~--i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~  166 (296)
T 1cr0_A           97 SLKREI-I------ENGKFDQWFDELFGNDTFH--LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGES  166 (296)
T ss_dssp             HHHHHH-H------HHTHHHHHHHHHHSSSCEE--EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC---------
T ss_pred             ccccCC-C------CHHHHHHHHHHHhccCCEE--EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCC
Confidence            443321 1      1112223344444433331  233346789998 66666 999999999999999999 53     


Q ss_pred             -h-hhHHHHHHHHHHHHhh
Q psy8250         163 -T-LTVHEHMTLMARLKMD  179 (212)
Q Consensus       163 -~-~~~~~~~~~l~~l~~~  179 (212)
                       . ....++++.|++++++
T Consensus       167 d~~~~~~~i~~~L~~la~~  185 (296)
T 1cr0_A          167 DERKMIDNLMTKLKGFAKS  185 (296)
T ss_dssp             --CHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHH
Confidence             3 4557788888888765

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.82  E-value=5.8e-23  Score=163.00  Aligned_cols=170  Identities=12%  Similarity=0.071  Sum_probs=101.7

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCC-----CCCCceEEEECCEeCCcccccceEEEE
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRI-----QGDVDGQILLNGLEVEKNLMVKVSGFV   75 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~-----~p~~~G~I~~~g~~~~~~~~~~~i~~v   75 (212)
                      ++++++.|+. .++++  |.+.+|..++|+|+||||||||++.|+|..     .| +.|.+.+.+.-.    ....+- +
T Consensus         6 ~~~~~~~~~~-~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~-~~G~~~~~~~~~----~~~~~~-l   76 (210)
T 1pui_A            6 YQQTHFVMSA-PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSK-TPGRTQLINLFE----VADGKR-L   76 (210)
T ss_dssp             -----CEEEE-SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC--------------CCEEEEE----EETTEE-E
T ss_pred             hhhhhheeec-CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccC-CCccceeeEEEE----ecCCEE-E
Confidence            4688999974 67777  889999999999999999999999999987     55 577665422100    000011 1


Q ss_pred             cCCCCCC----CCCC---HHHHHHHHHhh-hc--------ccCCCHHHHHHHHHHHHHHcCCccc-cCCCCCCCChHHHH
Q psy8250          76 PQHDLTV----DTLT---VHEHMTLMARL-KM--------DRNLHHVERARTVDALLKELGLLKC-KNSVLNVLSGGERK  138 (212)
Q Consensus        76 ~Q~~~~~----~~lt---v~e~l~~~~~~-~~--------~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~~LSgGqrq  138 (212)
                      .+.|...    +...   ....+...... ..        ............+.+++...++... ...++..+|+||+|
T Consensus        77 ~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~  156 (210)
T 1pui_A           77 VDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARK  156 (210)
T ss_dssp             EECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHH
T ss_pred             EECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHH
Confidence            1112111    0000   11112121110 00        0000001122345566777787653 36678899999999


Q ss_pred             H-HHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh
Q psy8250         139 R-VALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD  179 (212)
Q Consensus       139 R-v~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~  179 (212)
                      | +..+++++.+|.++++|||+| +|..+..++++.|.++..+
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~  199 (210)
T 1pui_A          157 AQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSE  199 (210)
T ss_dssp             HHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence            9 899999999999999999999 9999999999999887654

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=99.81  E-value=5.8e-22  Score=167.57  Aligned_cols=145  Identities=12%  Similarity=0.113  Sum_probs=101.1

Q ss_pred             CCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccc-------c--cceEEEEcCCCCCCCCCCHHHHHHH
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL-------M--VKVSGFVPQHDLTVDTLTVHEHMTL   93 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~-------~--~~~i~~v~Q~~~~~~~ltv~e~l~~   93 (212)
                      +|++++|+||||||||||+++|+|++.| .+|+|.+.|.++....       +  +..++|++|++..++..++++|+.+
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~-~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~  179 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN-LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA  179 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHT-TTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHh-cCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence            6999999999999999999999999998 6999999999874321       1  2458999999988888899999876


Q ss_pred             HHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCCCChhhHHHHHHHH
Q psy8250          94 MARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHMTLM  173 (212)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~lD~~~~~~~~~~l  173 (212)
                      .....  ..          ..+++..|..+.....   ++..++||++||||++.+|+.++|    .||+.+...+++.+
T Consensus       180 ~~~~~--~d----------~~llDt~G~~~~~~~~---~~eLs~~r~~iaRal~~~P~~~lL----vLDa~t~~~~~~~~  240 (304)
T 1rj9_A          180 MKARG--YD----------LLFVDTAGRLHTKHNL---MEELKKVKRAIAKADPEEPKEVWL----VLDAVTGQNGLEQA  240 (304)
T ss_dssp             HHHHT--CS----------EEEECCCCCCTTCHHH---HHHHHHHHHHHHHHCTTCCSEEEE----EEETTBCTHHHHHH
T ss_pred             HHhCC--CC----------EEEecCCCCCCchHHH---HHHHHHHHHHHHHhhcCCCCeEEE----EEcHHHHHHHHHHH
Confidence            43210  00          0122223433222223   344558999999999999994444    45555555666667


Q ss_pred             HHHHhhc------CcchHHH
Q psy8250         174 ARLKMDR------NLHHVER  187 (212)
Q Consensus       174 ~~l~~~~------~~h~~~~  187 (212)
                      +++++..      .||+.+.
T Consensus       241 ~~~~~~~~~t~iivTh~d~~  260 (304)
T 1rj9_A          241 KKFHEAVGLTGVIVTKLDGT  260 (304)
T ss_dssp             HHHHHHHCCSEEEEECTTSS
T ss_pred             HHHHHHcCCcEEEEECCccc
Confidence            7765542      2687544

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.81  E-value=3.2e-19  Score=152.72  Aligned_cols=62  Identities=27%  Similarity=0.277  Sum_probs=53.3

Q ss_pred             cCCCCCCCChHHHH------HHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHH
Q psy8250         125 KNSVLNVLSGGERK------RVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVE  186 (212)
Q Consensus       125 ~~~~~~~LSgGqrq------Rv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~  186 (212)
                      .++++.+|||||||      |+++|+||+.+|++|||||||+ ||+..+..++++|.++..+.     .+||.+
T Consensus       242 ~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~  315 (339)
T 3qkt_A          242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE  315 (339)
T ss_dssp             EEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG
T ss_pred             CcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH
Confidence            45678999999999      6677788888999999999999 99999999999999986543     379854

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.81  E-value=3.7e-21  Score=182.38  Aligned_cols=155  Identities=20%  Similarity=0.247  Sum_probs=114.4

Q ss_pred             HHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccC-CC----HHHHHHHHH
Q psy8250          39 TLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRN-LH----HVERARTVD  113 (212)
Q Consensus        39 TLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~-~~----~~~~~~~~~  113 (212)
                      |+..|..+.+.| ..++|.++|+++..                +..+++.+++.|......... ..    .........
T Consensus       383 ~C~~C~g~rl~~-~~~~V~i~G~~i~~----------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~  445 (916)
T 3pih_A          383 TCSVCGGRRLNR-EALSVKINGLNIHE----------------FTELSISEELEFLKNLNLTEREREIVGELLKEIEKRL  445 (916)
T ss_dssp             ECTTTCSCCBCT-TGGGEEETTEEHHH----------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHH
T ss_pred             cchhcccccCCh-HhcCcEECCccHHH----------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHH
Confidence            344556666777 68999999988632                223466666665432211000 00    011123345


Q ss_pred             HHHHHcCCccc-cCCCCCCCChHHHHHHHHHHHHhhCCC--eEEecCCCC-CChhhHHHHHHHHHHHHhhcC-----cch
Q psy8250         114 ALLKELGLLKC-KNSVLNVLSGGERKRVALAVQTIIVQS--GFVPQHDLT-VDTLTVHEHMTLMARLKMDRN-----LHH  184 (212)
Q Consensus       114 ~~l~~~gl~~~-~~~~~~~LSgGqrqRv~lA~al~~~p~--llilDEPt~-lD~~~~~~~~~~l~~l~~~~~-----~h~  184 (212)
                      ++|..+|+... .++++.+|||||+|||+|||||+.+|+  +|||||||+ ||+....+++++|+++++++.     +||
T Consensus       446 ~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd  525 (916)
T 3pih_A          446 EFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHD  525 (916)
T ss_dssp             HHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCC
T ss_pred             HHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            67888999764 689999999999999999999999887  999999999 999999999999999986543     799


Q ss_pred             HHHHHHHH--HHH------HhcCeeecCCchhhh
Q psy8250         185 VERARTVD--ALL------KELGLLKCRPADELN  210 (212)
Q Consensus       185 ~~~~~~~~--~~l------~~g~~~~~~~~~~~~  210 (212)
                      ++.+..++  ..|      ++|++++.|+++++.
T Consensus       526 ~~~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~  559 (916)
T 3pih_A          526 EEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELL  559 (916)
T ss_dssp             HHHHHTCSEEEEEESSSGGGCSEEEEEECHHHHH
T ss_pred             HHHHHhCCEEEEEcCCcccCCCEEEEeechhhhh
Confidence            98876544  356      899999999999874

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.81  E-value=1.4e-22  Score=161.72  Aligned_cols=131  Identities=15%  Similarity=0.075  Sum_probs=102.2

Q ss_pred             EcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCC--CCCCHHHHHHHHHhhh
Q psy8250          21 AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTV--DTLTVHEHMTLMARLK   98 (212)
Q Consensus        21 i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~--~~ltv~e~l~~~~~~~   98 (212)
                      .++|+++||+||||||||||+++|+|++.|                    .++|++|++.++  ..+++.++..+...  
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~--------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~--   60 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLAQALARTLGE--------------------RVALLPMDHYYKDLGHLPLEERLRVNYD--   60 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHHHHHHHHHGG--------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT--
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhCC--------------------CeEEEecCccccCcccccHHHhcCCCCC--
Confidence            578999999999999999999999997643                    378999988765  56788887654211  


Q ss_pred             cccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHH----HHHHHHHHHhhCCCeEEecCCCC--------CChhhH
Q psy8250          99 MDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGER----KRVALAVQTIIVQSGFVPQHDLT--------VDTLTV  166 (212)
Q Consensus        99 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqr----qRv~lA~al~~~p~llilDEPt~--------lD~~~~  166 (212)
                      .    +.......+.++++.+++.+..+.++.++|+||+    ||+++|++++.+|+++++|||++        +|+...
T Consensus        61 ~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~  136 (211)
T 3asz_A           61 H----PDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADAD  136 (211)
T ss_dssp             S----GGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHH
T ss_pred             C----hhhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHH
Confidence            0    1111234566778888887777778889999974    78899999999999999999987        588888


Q ss_pred             HHHHHHHHHHH
Q psy8250         167 HEHMTLMARLK  177 (212)
Q Consensus       167 ~~~~~~l~~l~  177 (212)
                      .++.+.+.+..
T Consensus       137 ~~~~r~l~r~~  147 (211)
T 3asz_A          137 ERFIRRLKRDV  147 (211)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88988887753

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=99.81  E-value=9.7e-20  Score=164.06  Aligned_cols=65  Identities=26%  Similarity=0.246  Sum_probs=57.2

Q ss_pred             CCCCCC-ChHHHHHHHHHHHHhhCC--CeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH
Q psy8250         127 SVLNVL-SGGERKRVALAVQTIIVQ--SGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV  191 (212)
Q Consensus       127 ~~~~~L-SgGqrqRv~lA~al~~~p--~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~  191 (212)
                      +++..| ||||+|||+||+||+.+|  ++|||||||+ ||+.+...+.++|++++...    +||+++.+..+
T Consensus       392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~  464 (517)
T 4ad8_A          392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARA  464 (517)
T ss_dssp             CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHS
T ss_pred             ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhC
Confidence            356677 999999999999999999  9999999999 99999999999999997632    38998877543

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=99.81  E-value=5.8e-21  Score=178.58  Aligned_cols=128  Identities=13%  Similarity=0.042  Sum_probs=94.6

Q ss_pred             CCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCC-CCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCH
Q psy8250           9 GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ-GDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTV   87 (212)
Q Consensus         9 ~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~-p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv   87 (212)
                      ++..+++|+||+   |++++|+||||||||||||+|+|+.. + ..|.+.      .  ..+..+++++|   +++.+++
T Consensus       564 ~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~-~~G~~v------p--a~~~~i~~v~~---i~~~~~~  628 (765)
T 1ewq_A          564 RTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLA-QVGSFV------P--AEEAHLPLFDG---IYTRIGA  628 (765)
T ss_dssp             TSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHH-TTTCCB------S--SSEEEECCCSE---EEEECCC
T ss_pred             CCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhc-ccCcee------e--hhccceeeHHH---hhccCCH
Confidence            445689999998   99999999999999999999999864 5 467642      1  12334677766   4555566


Q ss_pred             HHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHH--hhCCCeEEecCC---CC-C
Q psy8250          88 HEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQT--IIVQSGFVPQHD---LT-V  161 (212)
Q Consensus        88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al--~~~p~llilDEP---t~-l  161 (212)
                      .||+..                                     .+|+|+++++.+|+++  +.+|+++|||||   |+ +
T Consensus       629 ~d~l~~-------------------------------------g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~l  671 (765)
T 1ewq_A          629 SDDLAG-------------------------------------GKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSL  671 (765)
T ss_dssp             -------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHH
T ss_pred             HHHHHh-------------------------------------cccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCc
Confidence            554321                                     3589999999999999  999999999999   99 9


Q ss_pred             ChhhH-HHHHHHHHHHHhhc---CcchHHHHH
Q psy8250         162 DTLTV-HEHMTLMARLKMDR---NLHHVERAR  189 (212)
Q Consensus       162 D~~~~-~~~~~~l~~l~~~~---~~h~~~~~~  189 (212)
                      |+.+. ..+++.|.+ ....   .||+.+.+.
T Consensus       672 D~~~~~~~i~~~L~~-~g~~vl~~TH~~~l~~  702 (765)
T 1ewq_A          672 DGVAIATAVAEALHE-RRAYTLFATHYFELTA  702 (765)
T ss_dssp             HHHHHHHHHHHHHHH-HTCEEEEECCCHHHHT
T ss_pred             CHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHH
Confidence            99876 567887766 2111   389987753

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=99.80  E-value=1.6e-20  Score=178.18  Aligned_cols=135  Identities=13%  Similarity=0.045  Sum_probs=90.3

Q ss_pred             CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHH
Q psy8250          10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHE   89 (212)
Q Consensus        10 ~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e   89 (212)
                      +..+++||||++++|++++|+||||||||||||+|+++......|.      .+...  ...++++   ..++.      
T Consensus       659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~------~vpa~--~~~i~~~---d~i~~------  721 (918)
T 3thx_B          659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGS------YVPAE--EATIGIV---DGIFT------  721 (918)
T ss_dssp             SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTC------CBSSS--EEEEECC---SEEEE------
T ss_pred             CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCc------cccch--hhhhhHH---HHHHH------
Confidence            4678999999999999999999999999999999986432111121      00000  0011111   01111      


Q ss_pred             HHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHH
Q psy8250          90 HMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHE  168 (212)
Q Consensus        90 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~  168 (212)
                                                  .+|+.+......+.+|+||+|++.|+++ +.+|+++|||||++ +|+.....
T Consensus       722 ----------------------------~ig~~d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~  772 (918)
T 3thx_B          722 ----------------------------RMGAADNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIA  772 (918)
T ss_dssp             ----------------------------EC----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHH
T ss_pred             ----------------------------hCChHHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHH
Confidence                                        1222223334557889999999999998 89999999999999 99999988


Q ss_pred             HH-HHHHHHHhh-c-----CcchHHHHHH
Q psy8250         169 HM-TLMARLKMD-R-----NLHHVERART  190 (212)
Q Consensus       169 ~~-~~l~~l~~~-~-----~~h~~~~~~~  190 (212)
                      +. .++..++.+ +     .||+.+.+..
T Consensus       773 i~~~il~~L~~~~g~tvl~vTH~~el~~l  801 (918)
T 3thx_B          773 IAYATLEYFIRDVKSLTLFVTHYPPVCEL  801 (918)
T ss_dssp             HHHHHHHHHHHTTCCEEEEECSCGGGGGH
T ss_pred             HHHHHHHHHHHhcCCeEEEEeCcHHHHHH
Confidence            86 778888653 2     3799876643

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.80  E-value=5.9e-24  Score=191.89  Aligned_cols=156  Identities=13%  Similarity=0.065  Sum_probs=108.1

Q ss_pred             ccccccCCcceeeeeEE-EEcCCcEEEEECCCCccHHHHHHH--HHcCCCCCCceEEEECCEeCCcc--cccceEEEEcC
Q psy8250           3 TFHPLFGDTNYKESLSG-IAESGSLLAIMGPSGAGKTTLLAC--ISQRIQGDVDGQILLNGLEVEKN--LMVKVSGFVPQ   77 (212)
Q Consensus         3 ~l~~~~~~~~~l~~vs~-~i~~Ge~~~iiGpnGaGKSTLl~~--i~g~~~p~~~G~I~~~g~~~~~~--~~~~~i~~v~Q   77 (212)
                      ++.+.+++..+|++|+| .+++|++++|+||||||||||+++  ++|+.+| .+|.|+++|.+....  ..++.+||++|
T Consensus        17 ~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~-~~g~i~v~g~~~~~~~~~~~~~~g~~~q   95 (525)
T 1tf7_A           17 AIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEF-DEPGVFVTFEETPQDIIKNARSFGWDLA   95 (525)
T ss_dssp             SCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHH-CCCEEEEESSSCHHHHHHHHGGGTCCHH
T ss_pred             ccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhC-CCCEEEEEEeCCHHHHHHHHHHcCCChH
Confidence            45555667889999999 999999999999999999999999  7899887 599999999874221  23456799999


Q ss_pred             CCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecC
Q psy8250          78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQH  157 (212)
Q Consensus        78 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDE  157 (212)
                      ++....      ++.+   ... .. .     ....++++.+++.+..++.+..||+|             +|+++++||
T Consensus        96 ~~~~~~------~l~~---~~~-~~-~-----~~~~~~l~~~~l~~~~~~~~~~LS~g-------------~~~~lilDe  146 (525)
T 1tf7_A           96 KLVDEG------KLFI---LDA-SP-D-----PEGQEVVGGFDLSALIERINYAIQKY-------------RARRVSIDS  146 (525)
T ss_dssp             HHHHTT------SEEE---EEC-CC-C-----SSCCSCCSSHHHHHHHHHHHHHHHHH-------------TCSEEEEEC
T ss_pred             HhhccC------cEEE---Eec-Cc-c-----cchhhhhcccCHHHHHHHHHHHHHHc-------------CCCEEEECC
Confidence            753211      1100   000 00 0     00112233334444444555556665             588999999


Q ss_pred             CCC-C-----ChhhHHHHHHHHHHHHhhcC-----cchHHHH
Q psy8250         158 DLT-V-----DTLTVHEHMTLMARLKMDRN-----LHHVERA  188 (212)
Q Consensus       158 Pt~-l-----D~~~~~~~~~~l~~l~~~~~-----~h~~~~~  188 (212)
                      ||+ +     |+..++.++++++++++.+.     +|+++.+
T Consensus       147 ~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~  188 (525)
T 1tf7_A          147 VTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEY  188 (525)
T ss_dssp             STTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSS
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCc
Confidence            997 4     77889999999999987542     6988764

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.80  E-value=7.5e-20  Score=165.08  Aligned_cols=132  Identities=11%  Similarity=0.068  Sum_probs=100.7

Q ss_pred             EEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHHHHHHhh
Q psy8250          18 SGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARL   97 (212)
Q Consensus        18 s~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~   97 (212)
                      ++.+.+|++++|+||||||||||+++++|...+  .|.              +.+.|++|++.    .++.++.   ..+
T Consensus       275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~--~G~--------------~vi~~~~ee~~----~~l~~~~---~~~  331 (525)
T 1tf7_A          275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA--NKE--------------RAILFAYEESR----AQLLRNA---YSW  331 (525)
T ss_dssp             TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT--TTC--------------CEEEEESSSCH----HHHHHHH---HTT
T ss_pred             CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh--CCC--------------CEEEEEEeCCH----HHHHHHH---HHc
Confidence            458999999999999999999999999998766  343              11456677641    1222221   111


Q ss_pred             hcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChh-----hHHHHHH
Q psy8250          98 KMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTL-----TVHEHMT  171 (212)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~-----~~~~~~~  171 (212)
                          +..       +.+ +...|+....+.++.+||+||+||+++|+++..+|+++|+| ||+ +|..     .+..+.+
T Consensus       332 ----g~~-------~~~-~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~  398 (525)
T 1tf7_A          332 ----GMD-------FEE-MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIG  398 (525)
T ss_dssp             ----SCC-------HHH-HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHH
T ss_pred             ----CCC-------HHH-HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHH
Confidence                121       112 33567777788889999999999999999999999999999 999 9999     8999999


Q ss_pred             HHHHHHhhcC-----cchH
Q psy8250         172 LMARLKMDRN-----LHHV  185 (212)
Q Consensus       172 ~l~~l~~~~~-----~h~~  185 (212)
                      +++.+++.+.     +|+.
T Consensus       399 ll~~l~~~g~tvilvsh~~  417 (525)
T 1tf7_A          399 VTGYAKQEEITGLFTNTSD  417 (525)
T ss_dssp             HHHHHHHTTCEEEEEEECS
T ss_pred             HHHHHHhCCCEEEEEECcc
Confidence            9999886542     5876

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=99.79  E-value=2.6e-21  Score=183.99  Aligned_cols=144  Identities=13%  Similarity=0.036  Sum_probs=98.5

Q ss_pred             CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHH--------HcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCC
Q psy8250          10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACI--------SQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLT   81 (212)
Q Consensus        10 ~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i--------~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~   81 (212)
                      +..+++|++|++++|++++|+||||||||||||+|        .|.+.| ..+..               ++++.   .+
T Consensus       648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vp-a~~~~---------------~~~~d---~i  708 (934)
T 3thx_A          648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVP-CESAE---------------VSIVD---CI  708 (934)
T ss_dssp             CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBS-EEEEE---------------EECCS---EE
T ss_pred             ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccc-ccccc---------------chHHH---HH
Confidence            45688999999999999999999999999999999        555444 22211               11100   00


Q ss_pred             CCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHH--hhCCCeEEecCCC
Q psy8250          82 VDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQT--IIVQSGFVPQHDL  159 (212)
Q Consensus        82 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al--~~~p~llilDEPt  159 (212)
                                                        +..+|+.   +.....+|+|++++..+|+++  +.+|+++|||||+
T Consensus       709 ----------------------------------~~~ig~~---d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~  751 (934)
T 3thx_A          709 ----------------------------------LARVGAG---DSQLKGVSTFMAEMLETASILRSATKDSLIIIDELG  751 (934)
T ss_dssp             ----------------------------------EEECC------------CHHHHHHHHHHHHHHHCCTTCEEEEESCS
T ss_pred             ----------------------------------HHhcCch---hhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCC
Confidence                                              0011111   112345788888888888888  8999999999999


Q ss_pred             C-CChhhHHHH-HHHHHHHHhh-c-----CcchHHHHHHHH--HHHHhcCeeecCCchhh
Q psy8250         160 T-VDTLTVHEH-MTLMARLKMD-R-----NLHHVERARTVD--ALLKELGLLKCRPADEL  209 (212)
Q Consensus       160 ~-lD~~~~~~~-~~~l~~l~~~-~-----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~  209 (212)
                      + +|+.....+ +.++..++.+ +     .||+.+.+...+  ..+++|++.+.++++++
T Consensus       752 ~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l  811 (934)
T 3thx_A          752 RGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETL  811 (934)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCcE
Confidence            9 999998888 7778888763 2     379977654333  35778888877766654

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.79  E-value=1e-21  Score=151.18  Aligned_cols=87  Identities=24%  Similarity=0.202  Sum_probs=74.0

Q ss_pred             cccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCC
Q psy8250           2 ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLT   81 (212)
Q Consensus         2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~   81 (212)
                      +++++.|+++.+++++||++++|++++|+||||||||||+|+|+|++ | .+|+|.++|.++.......  .+++|++.+
T Consensus        11 ~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~-~~G~V~~~g~~i~~~~~~~--~~~~q~~~l   86 (158)
T 1htw_A           11 EFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G-HQGNVKSPTYTLVEEYNIA--GKMIYHFDL   86 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T-CCSCCCCCTTTCEEEEEET--TEEEEEEEC
T ss_pred             HHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C-CCCeEEECCEeeeeeccCC--Ccceecccc
Confidence            35678898888999999999999999999999999999999999999 8 6999999998774321111  278999888


Q ss_pred             CCCCCHHHHHHH
Q psy8250          82 VDTLTVHEHMTL   93 (212)
Q Consensus        82 ~~~ltv~e~l~~   93 (212)
                      + .+|+.||+.+
T Consensus        87 ~-~ltv~e~l~~   97 (158)
T 1htw_A           87 Y-RLADPEELEF   97 (158)
T ss_dssp             T-TCSCTTHHHH
T ss_pred             c-cCCcHHHHHH
Confidence            8 8999999865

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.77  E-value=2.1e-21  Score=177.98  Aligned_cols=145  Identities=10%  Similarity=0.091  Sum_probs=91.2

Q ss_pred             CcccccccCCc--ceeeee----------EEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCC----
Q psy8250           1 METFHPLFGDT--NYKESL----------SGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE----   64 (212)
Q Consensus         1 ~~~l~~~~~~~--~~l~~v----------s~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~----   64 (212)
                      +++++..|+..  .+++.+          +++++.   +||+||||||||||+++|+|+..|..+|.|+++|.++.    
T Consensus        13 ~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~   89 (608)
T 3szr_A           13 ENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKL   89 (608)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEEC
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecC
Confidence            35677777642  344444          355554   99999999999999999999987734999999998862    


Q ss_pred             --cccccceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHH
Q psy8250          65 --KNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVAL  142 (212)
Q Consensus        65 --~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~l  142 (212)
                        ...+++.++|+||++.+++.+||.+|+.+.........                .++.              ++++.+
T Consensus        90 ~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~----------------~~~s--------------~~~i~l  139 (608)
T 3szr_A           90 VNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEG----------------MGIS--------------HELITL  139 (608)
T ss_dssp             SSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSS----------------SCCC--------------SCCEEE
T ss_pred             CccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCc----------------cccc--------------hHHHHH
Confidence              12456789999999999999999999987543221100                0111              011222


Q ss_pred             HHHHhhCCCeEEecCC------CC-CChhhHHHHHHHHHHHHh
Q psy8250         143 AVQTIIVQSGFVPQHD------LT-VDTLTVHEHMTLMARLKM  178 (212)
Q Consensus       143 A~al~~~p~llilDEP------t~-lD~~~~~~~~~~l~~l~~  178 (212)
                      +.+....|+++|+|||      |+ +|+..+.++.+++.++..
T Consensus       140 ~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~  182 (608)
T 3szr_A          140 EISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQ  182 (608)
T ss_dssp             EEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTT
T ss_pred             HhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHh
Confidence            2233458999999999      99 999999999999999743

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.76  E-value=1.4e-20  Score=165.33  Aligned_cols=138  Identities=11%  Similarity=0.023  Sum_probs=85.7

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc--ccccceEEEEcCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK--NLMVKVSGFVPQH   78 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~--~~~~~~i~~v~Q~   78 (212)
                      ++++++.|+++.+++++||+|      +|+||||||||||+++|+|...+ ..|   .+|..+..  ....+.+++++|.
T Consensus        14 ~~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~-~~~---~~~~~~~~~~t~~~~~i~~v~q~   83 (418)
T 2qag_C           14 FANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLY-SPE---YPGPSHRIKKTVQVEQSKVLIKE   83 (418)
T ss_dssp             -CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCC-CCC---CCSCC-----CCEEEEEECC---
T ss_pred             EEecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCC-CCC---CCCcccCCccceeeeeEEEEEec
Confidence            468999999999999999998      99999999999999999998875 244   12222211  1123457899998


Q ss_pred             CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCC---eEEe
Q psy8250          79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQS---GFVP  155 (212)
Q Consensus        79 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~---llil  155 (212)
                      +.+++.+|++|++.++.....      ......+.+.++            ..++.+++||++||||++.+|+   ++++
T Consensus        84 ~~~~~~Ltv~Dt~g~~~~~~~------~~~~~~i~~~i~------------~~~~~~l~qr~~IaRal~~d~~~~vlL~l  145 (418)
T 2qag_C           84 GGVQLLLTIVDTPGFGDAVDN------SNCWQPVIDYID------------SKFEDYLNAESRVNRRQMPDNRVQCCLYF  145 (418)
T ss_dssp             ---CEEEEEEECC-----------------CHHHHHHHH------------HHHHHHTTTSCC-CCCCCCCC-CCEEEEE
T ss_pred             CCcccceeeeechhhhhhccc------hhhHHHHHHHHH------------HHHHHHHHHHHHHHHHhccCCCeeEEEEE
Confidence            888888899999877543210      001111222221            1345677889999999999999   9999


Q ss_pred             cCCC-C-CChhhH
Q psy8250         156 QHDL-T-VDTLTV  166 (212)
Q Consensus       156 DEPt-~-lD~~~~  166 (212)
                      |||| . +|+...
T Consensus       146 dePt~~~L~~~d~  158 (418)
T 2qag_C          146 IAPSGHGLKPLDI  158 (418)
T ss_dssp             CCC-CCSCCHHHH
T ss_pred             ecCcccCCCHHHH
Confidence            9999 5 888763

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.76  E-value=9.3e-19  Score=165.65  Aligned_cols=124  Identities=18%  Similarity=0.200  Sum_probs=100.5

Q ss_pred             CCCCHHHHHHHHHhhhcccCCCH----------HHHHHHHHHHHHHcCCccc-cCCCCCCCChHHHHHHHHHHHHhhCC-
Q psy8250          83 DTLTVHEHMTLMARLKMDRNLHH----------VERARTVDALLKELGLLKC-KNSVLNVLSGGERKRVALAVQTIIVQ-  150 (212)
Q Consensus        83 ~~ltv~e~l~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~gl~~~-~~~~~~~LSgGqrqRv~lA~al~~~p-  150 (212)
                      ..+||.|++.|...+.    ++.          .+...++ ++|..+||... +++.+.+|||||+|||+||++|..+| 
T Consensus       450 ~~ltV~e~~~f~e~l~----l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~  524 (972)
T 2r6f_A          450 TAMSVTEALAFFDGLE----LTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLT  524 (972)
T ss_dssp             HTSBHHHHHHHHHHCC----CCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCC
T ss_pred             hhCCHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCC
Confidence            3579999999965542    222          2334455 46899999864 79999999999999999999999985 


Q ss_pred             -CeEEecCCCC-CChhhHHHHHHHHHHHHhhcC-----cchHHHHHHHHH--HH------HhcCeeecCCchhhhc
Q psy8250         151 -SGFVPQHDLT-VDTLTVHEHMTLMARLKMDRN-----LHHVERARTVDA--LL------KELGLLKCRPADELNR  211 (212)
Q Consensus       151 -~llilDEPt~-lD~~~~~~~~~~l~~l~~~~~-----~h~~~~~~~~~~--~l------~~g~~~~~~~~~~~~~  211 (212)
                       ++|||||||+ ||+...+.++++|+++++.++     +|+++++..++.  .|      ++|++++.|+++++.+
T Consensus       525 ~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~  600 (972)
T 2r6f_A          525 GVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMN  600 (972)
T ss_dssp             SCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHHSCSEEEEECSSSGGGCCSEEEEECTTTTTT
T ss_pred             CCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEeCCCccCCCCEEEEecCHHHHHh
Confidence             9999999999 999999999999999987643     699988754442  45      7999999999988753

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.76  E-value=3.9e-20  Score=162.38  Aligned_cols=167  Identities=11%  Similarity=0.107  Sum_probs=105.2

Q ss_pred             cccccccCCcceeeeeEEEEcCCcE--EEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCC
Q psy8250           2 ETFHPLFGDTNYKESLSGIAESGSL--LAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHD   79 (212)
Q Consensus         2 ~~l~~~~~~~~~l~~vs~~i~~Ge~--~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~   79 (212)
                      .+ ++.|++.. ++++||++++|++  ++|+||||||||||+++|+|+..   .|.-..   .......++.++|++|++
T Consensus        20 ~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l---~g~~~~---~~~~~~~~~~i~~v~Q~~   91 (427)
T 2qag_B           20 AG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF---EGEPAT---HTQPGVQLQSNTYDLQES   91 (427)
T ss_dssp             CC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------------CCSSCEEEEEEEEEEC-
T ss_pred             ee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc---cCCcCC---CCCccceEeeEEEEeecC
Confidence            45 78898877 9999999999999  99999999999999999999742   222110   011112345689999998


Q ss_pred             CCCCCCCHHHHHHHHHhhhcccCCC--HHHHHHHHHHHHHHc-CCcc----ccCCCC-----------CCCChHHHHHHH
Q psy8250          80 LTVDTLTVHEHMTLMARLKMDRNLH--HVERARTVDALLKEL-GLLK----CKNSVL-----------NVLSGGERKRVA  141 (212)
Q Consensus        80 ~~~~~ltv~e~l~~~~~~~~~~~~~--~~~~~~~~~~~l~~~-gl~~----~~~~~~-----------~~LSgGqrqRv~  141 (212)
                      .+++.+|+.||+.++........+.  .......+.+++... ++..    ..+.++           ..|+-..   +.
T Consensus        92 ~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ie  168 (427)
T 2qag_B           92 NVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LV  168 (427)
T ss_dssp             -CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HH
T ss_pred             ccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HH
Confidence            8888889998876643211000000  011233455566655 4431    112221           2466555   78


Q ss_pred             HHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHH-HHhh
Q psy8250         142 LAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMAR-LKMD  179 (212)
Q Consensus       142 lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~-l~~~  179 (212)
                      ++++|..++++|++|||+. +.+.....+.+.+++ +...
T Consensus       169 ilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~  208 (427)
T 2qag_B          169 TMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSN  208 (427)
T ss_dssp             HHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTT
T ss_pred             HHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHc
Confidence            9999999999999999999 988888888888876 6544

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.75  E-value=7e-22  Score=169.33  Aligned_cols=171  Identities=7%  Similarity=0.005  Sum_probs=117.0

Q ss_pred             cccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-------cccceEEE
Q psy8250           2 ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-------LMVKVSGF   74 (212)
Q Consensus         2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-------~~~~~i~~   74 (212)
                      +++++.|+...+++++||++.+|++++|+||||||||||+++|+|++.| .+|+|.+.|.++...       ..++.+++
T Consensus        33 ~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~-~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~  111 (337)
T 2qm8_A           33 RRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTA-AGHKVAVLAVDPSSTRTGGSILGDKTRMAR  111 (337)
T ss_dssp             SSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEEEECGGGGSSCCCSSCCGGGSTT
T ss_pred             CCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhh-CCCEEEEEEEcCcccccccchHHHhhhhee
Confidence            5678888878899999999999999999999999999999999999988 699999999887431       23556899


Q ss_pred             EcCCCCCCCCCC------------HHHHHHHHHh-------------------hhcc-------cCCC-HHHHH---HHH
Q psy8250          75 VPQHDLTVDTLT------------VHEHMTLMAR-------------------LKMD-------RNLH-HVERA---RTV  112 (212)
Q Consensus        75 v~Q~~~~~~~lt------------v~e~l~~~~~-------------------~~~~-------~~~~-~~~~~---~~~  112 (212)
                      ++|++.++...+            +.|.+.....                   ....       .... .....   ..+
T Consensus       112 v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~~i  191 (337)
T 2qm8_A          112 LAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKGI  191 (337)
T ss_dssp             GGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCTTH
T ss_pred             eccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHHHH
Confidence            999987765321            2232211100                   0000       0000 00000   001


Q ss_pred             HHHHHHcCCccccCC-CCCCCChHHHHHHHHHHHHhh------CCCeEEecCCCC-CChhhHHHHHHHHHHHHh
Q psy8250         113 DALLKELGLLKCKNS-VLNVLSGGERKRVALAVQTII------VQSGFVPQHDLT-VDTLTVHEHMTLMARLKM  178 (212)
Q Consensus       113 ~~~l~~~gl~~~~~~-~~~~LSgGqrqRv~lA~al~~------~p~llilDEPt~-lD~~~~~~~~~~l~~l~~  178 (212)
                      .+....+.+ +..|. ....+|+|++|++..|++++.      .|++++    +| +|.....++++.|.++..
T Consensus       192 ~~~~~ivvl-NK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          192 FELADMIAV-NKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHCSEEEE-ECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred             hccccEEEE-EchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence            111111222 33442 235689999999999999987      688876    88 999999999999988654

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=99.75  E-value=2.9e-21  Score=152.77  Aligned_cols=126  Identities=17%  Similarity=0.144  Sum_probs=86.6

Q ss_pred             CcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccC
Q psy8250          24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRN  102 (212)
Q Consensus        24 Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~  102 (212)
                      |++++|+||||||||||+++|+|++. . +| |.++|...... .+++.+||++|+..  ..   .+++.   ++..  .
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~~-~-~G-i~~~g~~~~~~~~~~~~ig~~~~~~~--g~---~~~l~---~~~~--~   67 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVLK-S-SG-VPVDGFYTEEVRQGGRRIGFDVVTLS--GT---RGPLS---RVGL--E   67 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHHH-H-TT-CCCEEEECCEEETTSSEEEEEEEETT--SC---EEEEE---ECCC--C
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhcc-c-CC-EEEcCEecchhHhhhceEEEEEEecc--cc---eehhh---cccc--c
Confidence            78999999999999999999999886 4 89 99998877432 35677899999751  11   01110   0000  0


Q ss_pred             CCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHH-HHHH---HHhhCCCeEEecC--CCC-CChhhHHHHHHHHHH
Q psy8250         103 LHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRV-ALAV---QTIIVQSGFVPQH--DLT-VDTLTVHEHMTLMAR  175 (212)
Q Consensus       103 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv-~lA~---al~~~p~llilDE--Pt~-lD~~~~~~~~~~l~~  175 (212)
                      .+             ...-.+...++...+|+|||+++ ++++   |++.+|+++|+||  |+. +|....+.+.+++..
T Consensus        68 ~~-------------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~  134 (189)
T 2i3b_A           68 PP-------------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLST  134 (189)
T ss_dssp             CC-------------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC
T ss_pred             CC-------------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhC
Confidence            00             00001234555667999999988 4454   6899999999999  787 788766666666653

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=99.75  E-value=1.8e-21  Score=159.22  Aligned_cols=145  Identities=15%  Similarity=0.082  Sum_probs=101.8

Q ss_pred             CCcEEEEECCCCccHHHHHHHHH---cCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHHHHHHhh--
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACIS---QRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARL--   97 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~---g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~--   97 (212)
                      ++++++|+||||||||||+++|+   |+..+ +.|+|.++|.+... .....+++++|++.+++..++.+++......  
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~-~~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~  103 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL-SSGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELENRR  103 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE-EHHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe-cHHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence            47999999999999999999999   99888 68998887654321 1223345667777778888999998764321  


Q ss_pred             h---cccCCCHHHHHHHHHHHH--HHcC------------CccccCCCCCCCChHHHHHHHHHHHH-hhCCCeEEec---
Q psy8250          98 K---MDRNLHHVERARTVDALL--KELG------------LLKCKNSVLNVLSGGERKRVALAVQT-IIVQSGFVPQ---  156 (212)
Q Consensus        98 ~---~~~~~~~~~~~~~~~~~l--~~~g------------l~~~~~~~~~~LSgGqrqRv~lA~al-~~~p~llilD---  156 (212)
                      .   ...+.+...  ..+..+.  ..++            +....++++..|||    |+   +|+ +.+|+++++|   
T Consensus       104 ~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~  174 (246)
T 2bbw_A          104 GQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVT  174 (246)
T ss_dssp             TSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTT
T ss_pred             CCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccccc
Confidence            0   001111111  1122222  1223            23345777889999    66   778 9999999999   


Q ss_pred             -CCCC-CChhhHHHHHHHHHHHHh
Q psy8250         157 -HDLT-VDTLTVHEHMTLMARLKM  178 (212)
Q Consensus       157 -EPt~-lD~~~~~~~~~~l~~l~~  178 (212)
                       |||+ +|+.+...+.+.+..+.+
T Consensus       175 ~EP~~~ld~~~~~~i~~~l~~~~~  198 (246)
T 2bbw_A          175 GEPLVQQEDDKPEAVAARLRQYKD  198 (246)
T ss_dssp             CCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred             ccccccCCCCcHHHHHHHHHHHHH
Confidence             9999 999999999999888764

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=99.75  E-value=2.5e-19  Score=154.18  Aligned_cols=122  Identities=19%  Similarity=0.160  Sum_probs=90.6

Q ss_pred             eeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCC-CCCceEEEEC-CEeCCcccccceEEEEcCCCCCCCCCCHHHH
Q psy8250          13 YKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ-GDVDGQILLN-GLEVEKNLMVKVSGFVPQHDLTVDTLTVHEH   90 (212)
Q Consensus        13 ~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~-p~~~G~I~~~-g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~   90 (212)
                      .++++++. .+|++++|+||||||||||+|+|+|... | .+|+|.++ |..... .....+++++|++.+++.++++++
T Consensus       205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~-~~G~I~~~~G~g~~t-t~~~~i~~v~q~~~l~dtpgv~e~  281 (358)
T 2rcn_A          205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEI-LTNDVSNVSGLGQHT-TTAARLYHFPHGGDVIDSPGVREF  281 (358)
T ss_dssp             THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCC-CCC--------------CCCEEEECTTSCEEEECHHHHTC
T ss_pred             CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhcccccc-ccCCccccCCCCccc-eEEEEEEEECCCCEecCcccHHHh
Confidence            35566664 5899999999999999999999999998 8 69999987 765422 235568999999888888888874


Q ss_pred             HHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHH
Q psy8250          91 MTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQT  146 (212)
Q Consensus        91 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al  146 (212)
                      .     +   ...+..+....+.++++.+++..+.+..+.+|| ||+||++||+++
T Consensus       282 ~-----l---~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl  328 (358)
T 2rcn_A          282 G-----L---WHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA  328 (358)
T ss_dssp             C-----C---CCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred             h-----h---cCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence            1     1   123445556678889999999999999999999 999999999875

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=99.75  E-value=2.4e-18  Score=151.63  Aligned_cols=61  Identities=23%  Similarity=0.165  Sum_probs=51.8

Q ss_pred             CCCCCChHHHHHHHHHHHHhh----CCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHH
Q psy8250         128 VLNVLSGGERKRVALAVQTII----VQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERA  188 (212)
Q Consensus       128 ~~~~LSgGqrqRv~lA~al~~----~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~  188 (212)
                      ++..||||||||++||++|+.    +|+++|||||++ ||+..+..+.++|.++..+.     ++|+.+..
T Consensus       330 ~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~  400 (430)
T 1w1w_A          330 DMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF  400 (430)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH
T ss_pred             ccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH
Confidence            345699999999999999994    799999999999 99999999999999886422     37986543

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=99.74  E-value=1.1e-21  Score=172.32  Aligned_cols=146  Identities=16%  Similarity=0.093  Sum_probs=103.3

Q ss_pred             cccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-------cccceEEE
Q psy8250           2 ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-------LMVKVSGF   74 (212)
Q Consensus         2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-------~~~~~i~~   74 (212)
                      +++++.|+...+|+++ + ..+|++++|+|||||||||||++|+|++.| .+|.|.+.+.++...       .+...+++
T Consensus       147 ~~Lg~~~~~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~-~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~  223 (418)
T 1p9r_A          147 HSLGMTAHNHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNS-SERNILTVEDPIEFDIDGIGQTQVNPRVDM  223 (418)
T ss_dssp             GGSCCCHHHHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCC-TTSCEEEEESSCCSCCSSSEEEECBGGGTB
T ss_pred             HHcCCCHHHHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCC-CCCEEEEecccchhccCCcceEEEccccCc
Confidence            5677777777788888 5 389999999999999999999999999988 599999988776321       12334455


Q ss_pred             Ec---------CCCCCC--CC----CCHHHHHHHHHhhhcc-cCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHH
Q psy8250          75 VP---------QHDLTV--DT----LTVHEHMTLMARLKMD-RNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERK  138 (212)
Q Consensus        75 v~---------Q~~~~~--~~----ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrq  138 (212)
                      .|         |+|..+  .+    .|+.+++.+...-+.. ........ ..+...|..+++.+..  .+..|||||+|
T Consensus       224 ~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~-~~~i~rL~~lgl~~~~--~~~~LSgg~~Q  300 (418)
T 1p9r_A          224 TFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTA-VGAVTRLRDMGIEPFL--ISSSLLGVLAQ  300 (418)
T ss_dssp             CHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSS-HHHHHHHHHHTCCHHH--HHHHEEEEEEE
T ss_pred             CHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhH-HHHHHHHHHcCCcHHH--HHHHHHHHHHH
Confidence            44         888652  33    5888888775421100 00000001 1223356778887653  67899999999


Q ss_pred             HHHHHHHHhhCCCeEEe
Q psy8250         139 RVALAVQTIIVQSGFVP  155 (212)
Q Consensus       139 Rv~lA~al~~~p~llil  155 (212)
                      |  |||+|+.+|++..-
T Consensus       301 R--LaraL~~~p~~~~~  315 (418)
T 1p9r_A          301 R--LVRTLCPDCKEPYE  315 (418)
T ss_dssp             E--EEEEECTTTCEEEE
T ss_pred             H--hhhhhcCCCCccCC
Confidence            9  99999999998763

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=99.74  E-value=1.1e-20  Score=148.19  Aligned_cols=141  Identities=13%  Similarity=0.106  Sum_probs=92.5

Q ss_pred             EEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCCCCCCCCCHHHHHHHHHhhh
Q psy8250          20 IAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLK   98 (212)
Q Consensus        20 ~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~   98 (212)
                      .+++|++++|+||||||||||+++|+|.  + ..|.|.++|.++... ...+.++|++|.+.  +..++.+++.+.....
T Consensus         5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~-~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~   79 (191)
T 1zp6_A            5 DDLGGNILLLSGHPGSGKSTIAEALANL--P-GVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGRY   79 (191)
T ss_dssp             -CCTTEEEEEEECTTSCHHHHHHHHHTC--S-SSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHhc--c-CCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHHH
Confidence            4789999999999999999999999997  5 589999998765321 11233567777543  3567888877644321


Q ss_pred             cccCCCHHHHHHHHHHHHHHcCCcccc--CCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCCCChhhHHHHHHHHHHH
Q psy8250          99 MDRNLHHVERARTVDALLKELGLLKCK--NSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHMTLMARL  176 (212)
Q Consensus        99 ~~~~~~~~~~~~~~~~~l~~~gl~~~~--~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~lD~~~~~~~~~~l~~l  176 (212)
                      ...+..     ..++.++..+++....  +.++..+|+|++|+++++|++..+|+++       +|+...+.+++.+..+
T Consensus        80 ~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l-------ld~~~~~~~~~~~~~l  147 (191)
T 1zp6_A           80 AKEGYF-----VILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL-------SDPLVVADLHSQFADL  147 (191)
T ss_dssp             HHTSCE-----EEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC-------CCHHHHHHHHHHTTCC
T ss_pred             hccCCe-----EEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc-------CCHHHHHHHHHHHhcc
Confidence            100000     0001111112222222  4456789999999999999999998765       5777777777777655


Q ss_pred             H
Q psy8250         177 K  177 (212)
Q Consensus       177 ~  177 (212)
                      .
T Consensus       148 ~  148 (191)
T 1zp6_A          148 G  148 (191)
T ss_dssp             G
T ss_pred             C
Confidence            3

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=99.73  E-value=5e-19  Score=166.32  Aligned_cols=149  Identities=12%  Similarity=0.014  Sum_probs=94.9

Q ss_pred             CCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHH
Q psy8250           9 GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVH   88 (212)
Q Consensus         9 ~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~   88 (212)
                      ++..+++|++|+ ++|++++|+||||||||||||+|+|+..+...|.      .+..  ....+++++|   ++..+++.
T Consensus       593 ~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~vpa--~~~~i~~~~~---i~~~~~~~  660 (800)
T 1wb9_A          593 NEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YVPA--QKVEIGPIDR---IFTRVGAA  660 (800)
T ss_dssp             SSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CBSS--SEEEECCCCE---EEEEEC--
T ss_pred             CCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------ccch--hcccceeHHH---HHhhCCHH
Confidence            456789999999 9999999999999999999999999753212331      1211  1223555544   44444555


Q ss_pred             HHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHH
Q psy8250          89 EHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVH  167 (212)
Q Consensus        89 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~  167 (212)
                      +++..                                  ..+.+|+++++ ++.+...+.+|+++|||||++ +|+....
T Consensus       661 d~l~~----------------------------------~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~  705 (800)
T 1wb9_A          661 DDLAS----------------------------------GRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGL  705 (800)
T ss_dssp             -------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHH
T ss_pred             HHHHh----------------------------------hhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHH
Confidence            54321                                  11235666664 444456789999999999999 8888777


Q ss_pred             HH-HHHHHHHHhh-c-----CcchHHHHHHHHH--HHHhcCeeecC
Q psy8250         168 EH-MTLMARLKMD-R-----NLHHVERARTVDA--LLKELGLLKCR  204 (212)
Q Consensus       168 ~~-~~~l~~l~~~-~-----~~h~~~~~~~~~~--~l~~g~~~~~~  204 (212)
                      .+ +.++..++++ +     .||+.+.+...+.  .+.++++..+.
T Consensus       706 ~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~~  751 (800)
T 1wb9_A          706 SLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALE  751 (800)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEEE
T ss_pred             HHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEEE
Confidence            65 7888888763 3     3799876543332  34566554433

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=99.72  E-value=1.9e-20  Score=145.90  Aligned_cols=138  Identities=17%  Similarity=0.146  Sum_probs=87.1

Q ss_pred             cEEEEECCCCccHHHHHHHHHcCCCCCC---ceEEEECCEeCCc------cccc-ceEE----EEcCCCCCCCCCCHHHH
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQRIQGDV---DGQILLNGLEVEK------NLMV-KVSG----FVPQHDLTVDTLTVHEH   90 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g~~~p~~---~G~I~~~g~~~~~------~~~~-~~i~----~v~Q~~~~~~~ltv~e~   90 (212)
                      ++++|+||||||||||+++|+|++.| .   .|.|.++|.++..      ..++ +.++    +++|++.+|-    .+ 
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~-~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i----~~-   76 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRE-RGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFI----RR-   76 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHH-TTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEE----EE-
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhh-cCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEE----ec-
Confidence            58999999999999999999999987 5   7999999987421      1233 3466    7888765541    00 


Q ss_pred             HHHHHhhhcccCCCHHHHHHHHHHHHHH-c-CCccccCCCCCCCChHHHHHHHHHHHHhhCCCeE-------EecCCC--
Q psy8250          91 MTLMARLKMDRNLHHVERARTVDALLKE-L-GLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGF-------VPQHDL--  159 (212)
Q Consensus        91 l~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~ll-------ilDEPt--  159 (212)
                                 . .. +....+.++++. + |++....   ..|||||+||++||||++.+|++.       +-|.|.  
T Consensus        77 -----------~-~~-~~~a~l~~~i~~~l~g~dt~i~---EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~  140 (171)
T 2f1r_A           77 -----------V-SE-EEGNDLDWIYERYLSDYDLVIT---EGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDG  140 (171)
T ss_dssp             -----------C-CH-HHHTCHHHHHHHHTTTCSEEEE---ESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSS
T ss_pred             -----------C-Ch-hhhhCHHHHHHhhCCCCCEEEE---CCcCCCCCcEEEEEecccCCCccCccceEEEEecCCccc
Confidence                       0 00 001134455554 4 4443332   249999999999999999999874       335553  


Q ss_pred             -C-CChhhHHHHHHHHHHHHhhcCcch
Q psy8250         160 -T-VDTLTVHEHMTLMARLKMDRNLHH  184 (212)
Q Consensus       160 -~-lD~~~~~~~~~~l~~l~~~~~~h~  184 (212)
                       . +|......+.+++.+...+.++||
T Consensus       141 ~~~f~~~~~~~~a~~i~~~~~~~~~~~  167 (171)
T 2f1r_A          141 HKWFRRDEVERIAEFILSLLREGGSHH  167 (171)
T ss_dssp             SCEECTTCHHHHHHHHHHHHTC-----
T ss_pred             CcccCcccHHHHHHHHHHHHhccCccc
Confidence             3 566677888888877666666554

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=99.71  E-value=4.2e-17  Score=135.58  Aligned_cols=147  Identities=17%  Similarity=0.126  Sum_probs=96.6

Q ss_pred             EEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHHHHHHhhhc
Q psy8250          20 IAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKM   99 (212)
Q Consensus        20 ~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~   99 (212)
                      -+++|++++|+||||||||||++.+++...   .|.++ .|.+...   ...+.|+..+.      +..+.......+. 
T Consensus        26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~---~g~~~-~g~~~~~---~~~v~~~~~e~------~~~~~~~r~~~~g-   91 (279)
T 1nlf_A           26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA---GGPDL-LEVGELP---TGPVIYLPAED------PPTAIHHRLHALG-   91 (279)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHHHH---TCCCT-TCCCCCC---CCCEEEEESSS------CHHHHHHHHHHHH-
T ss_pred             CccCCCEEEEEcCCCCCHHHHHHHHHHHHh---cCCCc-CCCccCC---CccEEEEECCC------CHHHHHHHHHHHH-
Confidence            478999999999999999999999998553   46553 3543311   23466765543      2211111111111 


Q ss_pred             ccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC---CChhhH---HHHHHHH
Q psy8250         100 DRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT---VDTLTV---HEHMTLM  173 (212)
Q Consensus       100 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~---lD~~~~---~~~~~~l  173 (212)
                       ....    .....++++.+++.+..++.+..||+||+|++   ++++.+|+++|+|||++   +|+...   .++++.|
T Consensus        92 -~~~~----~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L  163 (279)
T 1nlf_A           92 -AHLS----AEERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRM  163 (279)
T ss_dssp             -TTSC----HHHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHH
T ss_pred             -hhcC----hhhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHH
Confidence             1111    12345678888888888889999999998765   68889999999999999   476444   7788888


Q ss_pred             HHHHhh-cC-----cchHHHH
Q psy8250         174 ARLKMD-RN-----LHHVERA  188 (212)
Q Consensus       174 ~~l~~~-~~-----~h~~~~~  188 (212)
                      .++.++ +.     +|+...+
T Consensus       164 ~~l~~~~g~tvi~i~H~~~~~  184 (279)
T 1nlf_A          164 EAIAADTGCSIVFLHHASKGA  184 (279)
T ss_dssp             HHHHHHHCCEEEEEEEC----
T ss_pred             HHHHHHcCCEEEEEecCCCcc
Confidence            888644 22     4666544

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.71  E-value=1.6e-19  Score=145.88  Aligned_cols=140  Identities=14%  Similarity=0.108  Sum_probs=90.5

Q ss_pred             EEEcCCcEEEEECCCCccHHHHHHHHHcCCCC-CCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCH----HHHHHH
Q psy8250          19 GIAESGSLLAIMGPSGAGKTTLLACISQRIQG-DVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTV----HEHMTL   93 (212)
Q Consensus        19 ~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p-~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv----~e~l~~   93 (212)
                      -..++|++++|+||||||||||+++|+|+++| ...|.|.+.+.+... ..++.++|+||++..|+.+++    .||+.+
T Consensus        11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~-~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~   89 (219)
T 1s96_A           11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP-GEVHGEHYFFVNHDEFKEMISRDAFLEHAEV   89 (219)
T ss_dssp             ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT-TCCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred             ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc-ccccCceEEECCHHHHHHHHhcCHHHHHHHH
Confidence            34789999999999999999999999999875 258999888766532 224557899997654433333    122111


Q ss_pred             HHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCCCChhhHHHHHHHH
Q psy8250          94 MARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHMTLM  173 (212)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~lD~~~~~~~~~~l  173 (212)
                      ...                                   +.|-.+++   +..++..++++|||    +|+.+..++++.+
T Consensus        90 ~~~-----------------------------------~yg~~~~~---v~~~l~~G~illLD----LD~~~~~~i~~~l  127 (219)
T 1s96_A           90 FGN-----------------------------------YYGTSREA---IEQVLATGVDVFLD----IDWQGAQQIRQKM  127 (219)
T ss_dssp             TTE-----------------------------------EEEEEHHH---HHHHHTTTCEEEEE----CCHHHHHHHHHHC
T ss_pred             Hhc-----------------------------------cCCCCHHH---HHHHHhcCCeEEEE----ECHHHHHHHHHHc
Confidence            000                                   00000111   23444558999999    9999999999987


Q ss_pred             HHHHhhc----CcchHHHHHHHHHHHHhcCeeecCCchhhh
Q psy8250         174 ARLKMDR----NLHHVERARTVDALLKELGLLKCRPADELN  210 (212)
Q Consensus       174 ~~l~~~~----~~h~~~~~~~~~~~l~~g~~~~~~~~~~~~  210 (212)
                      .   ...    .+|+++.+..  .++.+|    .++++++.
T Consensus       128 ~---~~~tI~i~th~~~~l~~--Rl~~rG----~~~~e~i~  159 (219)
T 1s96_A          128 P---HARSIFILPPSKIELDR--RLRGRG----QDSEEVIA  159 (219)
T ss_dssp             T---TCEEEEEECSSHHHHHH--HHHTTS----CSCHHHHH
T ss_pred             c---CCEEEEEECCCHHHHHH--HHHHcC----CCCHHHHH
Confidence            6   211    3799988765  346666    45666664

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=99.71  E-value=1.2e-19  Score=156.11  Aligned_cols=154  Identities=15%  Similarity=0.082  Sum_probs=95.7

Q ss_pred             eeeee-EEEEcCCcEEEEECCCCccHHHHHHHHHcCC--CCCCc----eE-EEECCEeCCcccccceEEEEcCCCCCCCC
Q psy8250          13 YKESL-SGIAESGSLLAIMGPSGAGKTTLLACISQRI--QGDVD----GQ-ILLNGLEVEKNLMVKVSGFVPQHDLTVDT   84 (212)
Q Consensus        13 ~l~~v-s~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~--~p~~~----G~-I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~   84 (212)
                      .|+.+ ++.+++|++++|+||||||||||++.+++..  +| .+    |. |++++.+..   .++.+++++|...+++.
T Consensus       119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~-~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~  194 (349)
T 1pzn_A          119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPP-EEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD  194 (349)
T ss_dssp             HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCG-GGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH
T ss_pred             HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccch-hcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH
Confidence            45554 5789999999999999999999999999987  44 34    67 888876541   23346667776554432


Q ss_pred             CCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHh-------hCCCeEEecC
Q psy8250          85 LTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTI-------IVQSGFVPQH  157 (212)
Q Consensus        85 ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~-------~~p~llilDE  157 (212)
                       ++.+|+.+..      .                            .-|.+++|++.++++++       .+|+++|+||
T Consensus       195 -~v~~ni~~~~------~----------------------------~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs  239 (349)
T 1pzn_A          195 -EVLKHIYVAR------A----------------------------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDS  239 (349)
T ss_dssp             -HHGGGEEEEE------C----------------------------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEET
T ss_pred             -HHhhCEEEEe------c----------------------------CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeC
Confidence             3433332110      0                            01456777777777777       6899999999


Q ss_pred             CCC-CChhh------------HHHHHHHHHHHHhhcC------cchHHHHHH---HHHHHHhcCeeecCC
Q psy8250         158 DLT-VDTLT------------VHEHMTLMARLKMDRN------LHHVERART---VDALLKELGLLKCRP  205 (212)
Q Consensus       158 Pt~-lD~~~------------~~~~~~~l~~l~~~~~------~h~~~~~~~---~~~~l~~g~~~~~~~  205 (212)
                      ||+ +|+..            ..+++..|.++.++.+      +|.......   .......|+++++++
T Consensus       240 ~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~  309 (349)
T 1pzn_A          240 LTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSA  309 (349)
T ss_dssp             SSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTC
T ss_pred             chHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecC
Confidence            999 88752            3555666666655432      365443321   112344677666654

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=99.71  E-value=8e-19  Score=140.80  Aligned_cols=121  Identities=15%  Similarity=0.099  Sum_probs=73.2

Q ss_pred             EEcCCcEEEEECCCCccHHHHHHHHHcCCCCC------CceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHHHH
Q psy8250          20 IAESGSLLAIMGPSGAGKTTLLACISQRIQGD------VDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTL   93 (212)
Q Consensus        20 ~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~------~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~   93 (212)
                      -+++|++++|+||||||||||+++|+|...++      ..|.+++++.+..   ..+.+++++|...+++. ++.+|+.+
T Consensus        21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~---~~~~i~~~~~~~~~~~~-~~~~~~~~   96 (231)
T 4a74_A           21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD-EVLKHIYV   96 (231)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC---CHHHHHHHHHHTTSCHH-HHHHTEEE
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC---CHHHHHHHHHHcCCCHH-HHhhcEEE
Confidence            58999999999999999999999999965541      2336666554321   01123344444333322 33333221


Q ss_pred             HHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChH-HHHHHHHHHHHhh-------CCCeEEecCCCC-CChh
Q psy8250          94 MARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGG-ERKRVALAVQTII-------VQSGFVPQHDLT-VDTL  164 (212)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG-qrqRv~lA~al~~-------~p~llilDEPt~-lD~~  164 (212)
                                                         ....+.+ +++.+..+++++.       +|+++++|||++ +|+.
T Consensus        97 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~  141 (231)
T 4a74_A           97 -----------------------------------ARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSE  141 (231)
T ss_dssp             -----------------------------------EECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHH
T ss_pred             -----------------------------------EecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccc
Confidence                                               0112223 2333555555555       899999999999 8873


Q ss_pred             -------h-----HHHHHHHHHHHHhh
Q psy8250         165 -------T-----VHEHMTLMARLKMD  179 (212)
Q Consensus       165 -------~-----~~~~~~~l~~l~~~  179 (212)
                             .     ..++++.|.++.++
T Consensus       142 ~~~~~~~~~r~~~~~~~~~~l~~~~~~  168 (231)
T 4a74_A          142 YIGRGALAERQQKLAKHLADLHRLANL  168 (231)
T ss_dssp             SCSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCcchhHHHHHHHHHHHHHHHHHHH
Confidence                   2     23677777776554

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=99.69  E-value=1.3e-20  Score=162.85  Aligned_cols=168  Identities=13%  Similarity=0.110  Sum_probs=97.6

Q ss_pred             eeeeeEEEEcC--CcEEEEECCCCccHHHHHHHHHcCCCCCCc----eEEEEC----CEeCCcccccceEEEEcCCCCCC
Q psy8250          13 YKESLSGIAES--GSLLAIMGPSGAGKTTLLACISQRIQGDVD----GQILLN----GLEVEKNLMVKVSGFVPQHDLTV   82 (212)
Q Consensus        13 ~l~~vs~~i~~--Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~----G~I~~~----g~~~~~~~~~~~i~~v~Q~~~~~   82 (212)
                      +.+.|+++|.+  |+.++|+||||||||||+++|+|++.| .+    |+|+++    |.++                 .+
T Consensus       157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~-~~~~e~G~i~i~~~~~~~~~-----------------~~  218 (365)
T 1lw7_A          157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNT-TSAWEYGREFVFEKLGGDEQ-----------------AM  218 (365)
T ss_dssp             GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTC-EEECCTTHHHHHHSSSSCTT-----------------SS
T ss_pred             ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCC-CcchhhHHHHHHhhcCCCcc-----------------cC
Confidence            35679999999  999999999999999999999999988 57    776653    2211                 00


Q ss_pred             CCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcC--CccccCCCCCCCChHHHHHHHHHHHHh-hCCCeEEecC--
Q psy8250          83 DTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELG--LLKCKNSVLNVLSGGERKRVALAVQTI-IVQSGFVPQH--  157 (212)
Q Consensus        83 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~g--l~~~~~~~~~~LSgGqrqRv~lA~al~-~~p~llilDE--  157 (212)
                      ..... +++.+.....          ........+.+-  -.+..+..+..+|+|++|+..+++++. .+|+++||||  
T Consensus       219 ~~~~~-~~I~~~~q~~----------~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~  287 (365)
T 1lw7_A          219 QYSDY-PQMALGHQRY----------IDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNN  287 (365)
T ss_dssp             CTTTH-HHHHHHHHHH----------HHHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECC
T ss_pred             ChhHH-HHHHHHHHHH----------HHHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCC
Confidence            11112 2233211100          000000000000  011112223345677788888887774 5899999999  


Q ss_pred             -CC------C-CChhhHHHHHHHHHHHHhh-cC-----cch--HHHHHHHHHHHHhcCeeecCCchhhhc
Q psy8250         158 -DL------T-VDTLTVHEHMTLMARLKMD-RN-----LHH--VERARTVDALLKELGLLKCRPADELNR  211 (212)
Q Consensus       158 -Pt------~-lD~~~~~~~~~~l~~l~~~-~~-----~h~--~~~~~~~~~~l~~g~~~~~~~~~~~~~  211 (212)
                       |+      . +|+..+..+.+.|.++..+ ..     +|.  .+.......++++  ++..++++++.+
T Consensus       288 ~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~i~~i~~--~l~~~~~~~~~~  355 (365)
T 1lw7_A          288 TEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQVKAVIEK--VLNEEEISELQN  355 (365)
T ss_dssp             CC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHHHHHHHH--HTSCCCCSSCCC
T ss_pred             CCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH--HhcccchhHhhc
Confidence             64      4 7999999999999887542 21     342  2333333445544  556767777654

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=99.69  E-value=9e-18  Score=144.72  Aligned_cols=116  Identities=24%  Similarity=0.230  Sum_probs=74.3

Q ss_pred             EEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHHHHHHhhhc
Q psy8250          20 IAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKM   99 (212)
Q Consensus        20 ~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~   99 (212)
                      .+.+|++++|+||||||||||+++|+|++.|..+|.|...+.++.. ......++++|........+..+          
T Consensus       119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~-~~~~~~~~v~q~~~~~~~~~~~~----------  187 (356)
T 3jvv_A          119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEF-VHESKKCLVNQREVHRDTLGFSE----------  187 (356)
T ss_dssp             HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCS-CCCCSSSEEEEEEBTTTBSCHHH----------
T ss_pred             HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHh-hhhccccceeeeeeccccCCHHH----------
Confidence            5678899999999999999999999999887325666554433321 12223345555432111111110          


Q ss_pred             ccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCCCChhhHHHHHHHHHHHHhh
Q psy8250         100 DRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHMTLMARLKMD  179 (212)
Q Consensus       100 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~lD~~~~~~~~~~l~~l~~~  179 (212)
                                                               +||+||.++|++|++|||+  |....    +.+.+++..
T Consensus       188 -----------------------------------------~La~aL~~~PdvillDEp~--d~e~~----~~~~~~~~~  220 (356)
T 3jvv_A          188 -----------------------------------------ALRSALREDPDIILVGEMR--DLETI----RLALTAAET  220 (356)
T ss_dssp             -----------------------------------------HHHHHTTSCCSEEEESCCC--SHHHH----HHHHHHHHT
T ss_pred             -----------------------------------------HHHHHhhhCcCEEecCCCC--CHHHH----HHHHHHHhc
Confidence                                                     9999999999999999999  54443    333333433


Q ss_pred             c-----CcchHHHHHHHHH
Q psy8250         180 R-----NLHHVERARTVDA  193 (212)
Q Consensus       180 ~-----~~h~~~~~~~~~~  193 (212)
                      +     ++|+.+.+..++.
T Consensus       221 G~~vl~t~H~~~~~~~~dR  239 (356)
T 3jvv_A          221 GHLVFGTLHTTSAAKTIDR  239 (356)
T ss_dssp             TCEEEEEESCSSHHHHHHH
T ss_pred             CCEEEEEEccChHHHHHHH
Confidence            2     2688776644443

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.68  E-value=7.3e-19  Score=148.37  Aligned_cols=122  Identities=16%  Similarity=0.113  Sum_probs=86.0

Q ss_pred             EEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEE---CCEeCCccc--cc-ceEEEEcCCCCCC-----CCCCHH
Q psy8250          20 IAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILL---NGLEVEKNL--MV-KVSGFVPQHDLTV-----DTLTVH   88 (212)
Q Consensus        20 ~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~---~g~~~~~~~--~~-~~i~~v~Q~~~~~-----~~ltv~   88 (212)
                      ++.+|++++|+||||||||||+|+|+ +..| .+|+|.+   +|++++...  .+ +.+||++|+|.+.     +.+|+ 
T Consensus       161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~-~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-  237 (302)
T 2yv5_A          161 DYLEGFICILAGPSGVGKSSILSRLT-GEEL-RTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-  237 (302)
T ss_dssp             HHTTTCEEEEECSTTSSHHHHHHHHH-SCCC-CCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred             hhccCcEEEEECCCCCCHHHHHHHHH-HhhC-cccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence            34679999999999999999999999 8888 6999999   898875421  12 3579999998653     67899 


Q ss_pred             HHH--HHHH----hhhcccCCCHHHHHHHHHHHHHHcCCcc-ccCCCCCCCChHHHHHHHHHH
Q psy8250          89 EHM--TLMA----RLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAV  144 (212)
Q Consensus        89 e~l--~~~~----~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqrqRv~lA~  144 (212)
                      +++  .|+.    ..+.....+..+....+.++++.+++.+ ..++++..|||.+++++.|||
T Consensus       238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~  300 (302)
T 2yv5_A          238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR  300 (302)
T ss_dssp             GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred             HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            887  4431    0011110111233456889999999986 788899999998899999986

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.68  E-value=3.2e-17  Score=154.39  Aligned_cols=103  Identities=23%  Similarity=0.260  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHcCCccc-cCCCCCCCChHHHHHHHHHHHHhhCC--CeEEecCCCC-CChhhHHHHHHHHHHHHhhcC--
Q psy8250         108 RARTVDALLKELGLLKC-KNSVLNVLSGGERKRVALAVQTIIVQ--SGFVPQHDLT-VDTLTVHEHMTLMARLKMDRN--  181 (212)
Q Consensus       108 ~~~~~~~~l~~~gl~~~-~~~~~~~LSgGqrqRv~lA~al~~~p--~llilDEPt~-lD~~~~~~~~~~l~~l~~~~~--  181 (212)
                      ...++. .+..+|+... .++++.+|||||+|||+||++|+.+|  .+|||||||+ ||+...+.++++|++++..++  
T Consensus       356 i~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TV  434 (842)
T 2vf7_A          356 LVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSL  434 (842)
T ss_dssp             HHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEE
T ss_pred             HHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEE
Confidence            344454 6889999865 79999999999999999999999999  5999999999 999999999999999987643  


Q ss_pred             ---cchHHHHHHHH--HHH------HhcCeeecCCchhhhc
Q psy8250         182 ---LHHVERARTVD--ALL------KELGLLKCRPADELNR  211 (212)
Q Consensus       182 ---~h~~~~~~~~~--~~l------~~g~~~~~~~~~~~~~  211 (212)
                         +|+++.+..++  ..|      ++|++++.|+++++.+
T Consensus       435 IvVeHdl~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~  475 (842)
T 2vf7_A          435 FVVEHDLDVIRRADWLVDVGPEAGEKGGEILYSGPPEGLKH  475 (842)
T ss_dssp             EEECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECGGGGGG
T ss_pred             EEEcCCHHHHHhCCEEEEeCCCcccCCCEEEEecCHHHHHh
Confidence               69998664433  255      7899999999998754

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=99.66  E-value=4.3e-19  Score=139.13  Aligned_cols=166  Identities=14%  Similarity=0.181  Sum_probs=100.0

Q ss_pred             CcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCC
Q psy8250          24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNL  103 (212)
Q Consensus        24 Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~  103 (212)
                      |++++|+||||||||||+++|++   + .+|.++++|.++...   ...++++|....++..++++++.+..........
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~---~-~~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   74 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAA---Q-LDNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFLLAQN   74 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH---H-SSSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CeEEEEECCCCCcHHHHHHHHhc---c-cCCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHHhcCC
Confidence            68999999999999999999997   4 478999988665221   1245666654333445677776654332110000


Q ss_pred             CHHHHHHHHHHHHHHcCCccccCCCCCCC--ChHHHHHHHHHH------HHhhCCCeEEecCCCCCChhhHHHHHHHHHH
Q psy8250         104 HHVERARTVDALLKELGLLKCKNSVLNVL--SGGERKRVALAV------QTIIVQSGFVPQHDLTVDTLTVHEHMTLMAR  175 (212)
Q Consensus       104 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~L--SgGqrqRv~lA~------al~~~p~llilDEPt~lD~~~~~~~~~~l~~  175 (212)
                               ..+++.+. .....+....+  |+||+|++.++.      +++.+|+...+|+  .+|+..... ++.+..
T Consensus        75 ---------~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~--~ld~~~~~~-~~~~~~  141 (189)
T 2bdt_A           75 ---------DVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE--QMGERCLEL-VEEFES  141 (189)
T ss_dssp             ---------EEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC------CGGGGHH-HHHHHH
T ss_pred             ---------cEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc--cCCHHHHHH-HHHHhh
Confidence                     00000000 00000111233  888888888888      9999999988883  488888887 888877


Q ss_pred             HHhhc-----Ccch-HHHHHH-HHHHHHhcCeeecCCchhh
Q psy8250         176 LKMDR-----NLHH-VERART-VDALLKELGLLKCRPADEL  209 (212)
Q Consensus       176 l~~~~-----~~h~-~~~~~~-~~~~l~~g~~~~~~~~~~~  209 (212)
                      +....     ++|. ++.+.. ++.++++|+++++|+++-+
T Consensus       142 ~~~~~~~ii~tsh~~~~~~e~~~~~i~~~g~~~~~~~~~~~  182 (189)
T 2bdt_A          142 KGIDERYFYNTSHLQPTNLNDIVKNLKTNPRFIFCMAGDPL  182 (189)
T ss_dssp             TTCCTTSEEECSSSCGGGHHHHHHHHHHCGGGSCC------
T ss_pred             cCCCccEEEeCCCCChhhHHHHHHHHhhCCcEEEeecCCch
Confidence            64332     3676 666655 3456699999999988754

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=99.66  E-value=4.7e-17  Score=140.50  Aligned_cols=110  Identities=12%  Similarity=0.023  Sum_probs=80.3

Q ss_pred             eeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeC-CcccccceEEEEc-CCCCCCCCCCHHHHH
Q psy8250          14 KESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV-EKNLMVKVSGFVP-QHDLTVDTLTVHEHM   91 (212)
Q Consensus        14 l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~-~~~~~~~~i~~v~-Q~~~~~~~ltv~e~l   91 (212)
                      ++++||.+++|++++|+||||||||||+++|+|+++| .+|.|.++|..- .....++.++|++ |++..          
T Consensus       165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~-~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~----------  233 (361)
T 2gza_A          165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPF-DQRLITIEDVPELFLPDHPNHVHLFYPSEAKE----------  233 (361)
T ss_dssp             HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCT-TSCEEEEESSSCCCCTTCSSEEEEECC---------------
T ss_pred             HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCC-CceEEEECCccccCccccCCEEEEeecCcccc----------
Confidence            3999999999999999999999999999999999998 699999987432 1122456788988 54321          


Q ss_pred             HHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCCCChhhHHHHHH
Q psy8250          92 TLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHMT  171 (212)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~lD~~~~~~~~~  171 (212)
                                                             .++++..++-.|+.++..+|+.+++|||..      .++.+
T Consensus       234 ---------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~------~~~~~  268 (361)
T 2gza_A          234 ---------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG------GEAYD  268 (361)
T ss_dssp             --------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS------THHHH
T ss_pred             ---------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH------HHHHH
Confidence                                                   012333467788888888999999999986      23455


Q ss_pred             HHHHHHhh
Q psy8250         172 LMARLKMD  179 (212)
Q Consensus       172 ~l~~l~~~  179 (212)
                      ++..+...
T Consensus       269 ~l~~l~~g  276 (361)
T 2gza_A          269 FINVAASG  276 (361)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHhcC
Confidence            66666543

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=99.62  E-value=3.3e-16  Score=125.33  Aligned_cols=145  Identities=13%  Similarity=0.048  Sum_probs=92.3

Q ss_pred             cceeeeeEE-EEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccccc---ceEEEEcCCCCCCCCCC
Q psy8250          11 TNYKESLSG-IAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMV---KVSGFVPQHDLTVDTLT   86 (212)
Q Consensus        11 ~~~l~~vs~-~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~---~~i~~v~Q~~~~~~~lt   86 (212)
                      ...|+++.+ .+++|++++|+||||||||||++.|++...+ ..|.|.+.+.+.......   ..+++.+|..... .+.
T Consensus         9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~   86 (235)
T 2w0m_A            9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLR-DGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KLI   86 (235)
T ss_dssp             CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHH-HTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TEE
T ss_pred             chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHH-CCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CEE
Confidence            456788886 7999999999999999999999999987766 467776654433211111   1112222211000 000


Q ss_pred             HHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCC--eEEecCCCC-C--
Q psy8250          87 VHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQS--GFVPQHDLT-V--  161 (212)
Q Consensus        87 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~--llilDEPt~-l--  161 (212)
                                  ......            ..++ ...   .....|.++.++...+.+...+|+  ++|+|||++ +  
T Consensus        87 ------------~~~~~~------------~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~  138 (235)
T 2w0m_A           87 ------------IIDALM------------KEKE-DQW---SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLD  138 (235)
T ss_dssp             ------------EEECCC-----------------CTT---BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSS
T ss_pred             ------------EEeccc------------cccC-cee---eecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcC
Confidence                        000000            0001 011   123449999999888888888999  999999998 7  


Q ss_pred             ChhhHHHHHHHHHHHHhhc------CcchH
Q psy8250         162 DTLTVHEHMTLMARLKMDR------NLHHV  185 (212)
Q Consensus       162 D~~~~~~~~~~l~~l~~~~------~~h~~  185 (212)
                      |+....++++.|+++..+.      .+|+.
T Consensus       139 d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~  168 (235)
T 2w0m_A          139 KPAMARKISYYLKRVLNKWNFTIYATSQYA  168 (235)
T ss_dssp             CGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred             CHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence            9999999999999986553      25876

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=99.62  E-value=2.2e-18  Score=147.10  Aligned_cols=166  Identities=19%  Similarity=0.198  Sum_probs=110.0

Q ss_pred             cccccccCCcceeeeeEEEEcCC-------cEEEEECCCCccHHHHHHHHHcCC----CCCCceEEEECCEeCCc---cc
Q psy8250           2 ETFHPLFGDTNYKESLSGIAESG-------SLLAIMGPSGAGKTTLLACISQRI----QGDVDGQILLNGLEVEK---NL   67 (212)
Q Consensus         2 ~~l~~~~~~~~~l~~vs~~i~~G-------e~~~iiGpnGaGKSTLl~~i~g~~----~p~~~G~I~~~g~~~~~---~~   67 (212)
                      ++++..||...+++++++.+.+|       +.++|+||||+|||||+++|++.+    .+ .+|.+..++.++..   ..
T Consensus        22 ~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~-~sg~~~~~~~~l~~~~~~~  100 (334)
T 1in4_A           22 KSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHV-TSGPVLVKQGDMAAILTSL  100 (334)
T ss_dssp             SSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEE-EETTTCCSHHHHHHHHHHC
T ss_pred             ccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE-EechHhcCHHHHHHHHHHc
Confidence            56788888888999999999887       899999999999999999999987    44 46766655544321   11


Q ss_pred             ccceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccC-CCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHH
Q psy8250          68 MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRN-LHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQT  146 (212)
Q Consensus        68 ~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al  146 (212)
                      .+..+.|+.|...+.+  ++.|++..........- .........+...+..+++.. ..+++..||+|++||+.++   
T Consensus       101 ~~~~v~~iDE~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~~~Ls~~l~sR~~l~---  174 (334)
T 1in4_A          101 ERGDVLFIDEIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRSGLLSSPLRSRFGII---  174 (334)
T ss_dssp             CTTCEEEEETGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESCGGGSCHHHHTTCSEE---
T ss_pred             cCCCEEEEcchhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCCcccCCHHHHHhcCce---
Confidence            2346899999776654  78887754332211000 001122234455566666654 6677889999999998655   


Q ss_pred             hhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-cCcchHHH
Q psy8250         147 IIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-RNLHHVER  187 (212)
Q Consensus       147 ~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~~~h~~~~  187 (212)
                                   . +|+.+..++.++|++.... ...|+.+.
T Consensus       175 -------------~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~  204 (334)
T 1in4_A          175 -------------LELDFYTVKELKEIIKRAASLMDVEIEDAA  204 (334)
T ss_dssp             -------------EECCCCCHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred             -------------eeCCCCCHHHHHHHHHHHHHHcCCCcCHHH
Confidence                         5 8888999999999887653 23455443

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=99.61  E-value=3.7e-20  Score=157.36  Aligned_cols=141  Identities=11%  Similarity=0.026  Sum_probs=89.2

Q ss_pred             cEEEEECCCCccHHHHHHHHHcCC--------CCCCceEEEECCEeCCcc------------------cccceEEEE---
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQRI--------QGDVDGQILLNGLEVEKN------------------LMVKVSGFV---   75 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g~~--------~p~~~G~I~~~g~~~~~~------------------~~~~~i~~v---   75 (212)
                      ++++|+|+||||||||+|.|.|..        .| +.|+|.++|.++...                  .+.+.++++   
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~-d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~   83 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIEN-EFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDN   83 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECS-SCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHH
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEe-cCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhH
Confidence            589999999999999999999986        56 699999999887432                  122345666   


Q ss_pred             cCCCCCCCCCCHHHHHHHHH--hhh-cccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCe
Q psy8250          76 PQHDLTVDTLTVHEHMTLMA--RLK-MDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSG  152 (212)
Q Consensus        76 ~Q~~~~~~~ltv~e~l~~~~--~~~-~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~l  152 (212)
                      +|++.++++.++.|+..++.  .+. .....+.......+..++..+++.+..++.. ++|+||+||+..+++++.+|++
T Consensus        84 ~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~-~ls~g~~Q~~~ad~ill~k~dl  162 (318)
T 1nij_A           84 LDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN-QFTIAQSQVGYADRILLTKTDV  162 (318)
T ss_dssp             HHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH-HCHHHHHHHHTCSEEEEECTTT
T ss_pred             HhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh-hchHHHHHHHhCCEEEEECccc
Confidence            57666566667777654321  000 0000000000011122233334444333333 7999999999888888888887


Q ss_pred             EEecCCCCCChhhHHHHHHHHHHHH
Q psy8250         153 FVPQHDLTVDTLTVHEHMTLMARLK  177 (212)
Q Consensus       153 lilDEPt~lD~~~~~~~~~~l~~l~  177 (212)
                      +  |||        .++.+.+++++
T Consensus       163 ~--de~--------~~l~~~l~~l~  177 (318)
T 1nij_A          163 A--GEA--------EKLHERLARIN  177 (318)
T ss_dssp             C--SCT--------HHHHHHHHHHC
T ss_pred             C--CHH--------HHHHHHHHHhC
Confidence            6  777        67777777765

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=99.61  E-value=5.1e-16  Score=118.00  Aligned_cols=62  Identities=27%  Similarity=0.252  Sum_probs=55.0

Q ss_pred             cCCCCCCCChHHHHHHHHH------HHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHH
Q psy8250         125 KNSVLNVLSGGERKRVALA------VQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVE  186 (212)
Q Consensus       125 ~~~~~~~LSgGqrqRv~lA------~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~  186 (212)
                      .++++.+||||||||++||      |||+.+|+++||||||+ ||+.++..+.++|.+++.+.     .+|+.+
T Consensus        51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~  124 (148)
T 1f2t_B           51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE  124 (148)
T ss_dssp             EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG
T ss_pred             ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH
Confidence            4678899999999999876      89999999999999999 99999999999999986543     379874

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=99.60  E-value=9.4e-18  Score=149.33  Aligned_cols=81  Identities=14%  Similarity=0.218  Sum_probs=69.2

Q ss_pred             eeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-------c--ccceEEEEcCCCCCCCC
Q psy8250          14 KESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-------L--MVKVSGFVPQHDLTVDT   84 (212)
Q Consensus        14 l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-------~--~~~~i~~v~Q~~~~~~~   84 (212)
                      -+++||++.+|++++|+||||||||||+++|+|++.+ .+|+|.+.|.+....       .  .++.++|++|++.+++.
T Consensus       283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~-~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~  361 (503)
T 2yhs_A          283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQ-QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA  361 (503)
T ss_dssp             BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHH
T ss_pred             CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhh-cCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHH
Confidence            4689999999999999999999999999999999988 699999987776431       1  24568999999888888


Q ss_pred             CCHHHHHHHHH
Q psy8250          85 LTVHEHMTLMA   95 (212)
Q Consensus        85 ltv~e~l~~~~   95 (212)
                      +++++|+.++.
T Consensus       362 ~tV~e~l~~a~  372 (503)
T 2yhs_A          362 SVIFDAIQAAK  372 (503)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            89999998764

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=99.60  E-value=2.8e-16  Score=136.20  Aligned_cols=98  Identities=20%  Similarity=0.174  Sum_probs=73.3

Q ss_pred             eeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCC-ceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHH
Q psy8250          13 YKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDV-DGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHM   91 (212)
Q Consensus        13 ~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~-~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l   91 (212)
                      +|++++  +++|++++|+||||||||||+++|+|++.| . +|.|.+.+.++. ...+..++|++|..            
T Consensus       127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~-~~~g~I~~~e~~~e-~~~~~~~~~v~Q~~------------  190 (372)
T 2ewv_A          127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQ-TKSYHIITIEDPIE-YVFKHKKSIVNQRE------------  190 (372)
T ss_dssp             SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHH-HSCCEEEEEESSCC-SCCCCSSSEEEEEE------------
T ss_pred             HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCc-CCCcEEEEecccHh-hhhccCceEEEeee------------
Confidence            456655  789999999999999999999999999887 5 799977765553 12344567787731            


Q ss_pred             HHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCCCChhhHH
Q psy8250          92 TLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLTVDTLTVH  167 (212)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~lD~~~~~  167 (212)
                                                 +|+.      +..+      +.+|+++|..+|++|++|||+  |+....
T Consensus       191 ---------------------------~g~~------~~~~------~~~l~~~L~~~pd~illdE~~--d~e~~~  225 (372)
T 2ewv_A          191 ---------------------------VGED------TKSF------ADALRAALREDPDVIFVGEMR--DLETVE  225 (372)
T ss_dssp             ---------------------------BTTT------BSCS------HHHHHHHTTSCCSEEEESCCC--SHHHHH
T ss_pred             ---------------------------cCCC------HHHH------HHHHHHHhhhCcCEEEECCCC--CHHHHH
Confidence                                       1221      1233      469999999999999999999  555433

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.59  E-value=1.7e-17  Score=139.87  Aligned_cols=108  Identities=13%  Similarity=0.114  Sum_probs=74.3

Q ss_pred             EEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEE---CCEeCCccc---ccceEEEEcCCCC------------
Q psy8250          19 GIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILL---NGLEVEKNL---MVKVSGFVPQHDL------------   80 (212)
Q Consensus        19 ~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~---~g~~~~~~~---~~~~i~~v~Q~~~------------   80 (212)
                      |++.+|++++|+||||||||||+|+|+|+..| ++|+|.+   +|++++...   ..+.+||++|.|.            
T Consensus       164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~-~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~  242 (301)
T 1u0l_A          164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKL-RVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPE  242 (301)
T ss_dssp             HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCC-C-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHH
T ss_pred             HHHhcCCeEEEECCCCCcHHHHHHHhcccccc-cccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHH
Confidence            34568999999999999999999999999999 6999999   898875421   1235799999985            


Q ss_pred             ----CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCCh
Q psy8250          81 ----TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSG  134 (212)
Q Consensus        81 ----~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSg  134 (212)
                          +++++|+ +|+.|....+      ..+...++.++|+.++|. +..++++..||.
T Consensus       243 ~~~~l~~~~~~-~n~~~~~~~~------~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse  294 (301)
T 1u0l_A          243 ELKHYFKEFGD-KQCFFSDCNH------VDEPECGVKEAVENGEIAESRYENYVKMFYE  294 (301)
T ss_dssp             HHGGGSTTSSS-CCCSSTTCCS------SSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccc-ccCcCCCCcC------CCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence                4788888 8887642111      112345688999999995 677888888885

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=99.58  E-value=3e-17  Score=137.78  Aligned_cols=126  Identities=13%  Similarity=0.118  Sum_probs=86.5

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHHHHHHh---hh
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMAR---LK   98 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~---~~   98 (212)
                      .++.++||.||+|||||||.+.|.+++.+  .|.           . ++.+.+|+|++.+++. +..+|+.+...   ..
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~--~g~-----------~-~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~   93 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME--KYG-----------G-EKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLL   93 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHH--HHG-----------G-GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhhh--cCC-----------C-CceEEEeccccccCCh-HHHHHHhccccccchh
Confidence            56889999999999999999999998865  330           0 2335566999877765 88888876521   01


Q ss_pred             cccCCCHHHHHHHHHHHHHHcCCc--------cccCCCCCCCChHHHHHHHHH--HHHhhCCCeEEecCCCC-CChh
Q psy8250          99 MDRNLHHVERARTVDALLKELGLL--------KCKNSVLNVLSGGERKRVALA--VQTIIVQSGFVPQHDLT-VDTL  164 (212)
Q Consensus        99 ~~~~~~~~~~~~~~~~~l~~~gl~--------~~~~~~~~~LSgGqrqRv~lA--~al~~~p~llilDEPt~-lD~~  164 (212)
                      ...+.+.......+.+.++.+.-.        .....+...+||||+||+.+|  +++  +|+|+|+|||++ +|+.
T Consensus        94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~  168 (290)
T 1odf_A           94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPI  168 (290)
T ss_dssp             SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCC
T ss_pred             hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCcc
Confidence            001111111233455666666322        123455678999999999997  555  999999999999 9985

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=99.57  E-value=6.3e-17  Score=137.99  Aligned_cols=133  Identities=12%  Similarity=0.102  Sum_probs=88.9

Q ss_pred             EcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccc-------ccc--eEEEEcCCCCCCCCCCHHHHH
Q psy8250          21 AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL-------MVK--VSGFVPQHDLTVDTLTVHEHM   91 (212)
Q Consensus        21 i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~-------~~~--~i~~v~Q~~~~~~~ltv~e~l   91 (212)
                      .++|++++|+||||||||||+++|+|++.| .+|+|.+.|.++....       +.+  .+.+++|...++|.+++++|+
T Consensus       126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~-~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l  204 (328)
T 3e70_C          126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKN-HGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI  204 (328)
T ss_dssp             SCSSEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHh-cCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence            368999999999999999999999999998 6999999999875321       122  245999999888999999999


Q ss_pred             HHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCCCChhhHHHHHH
Q psy8250          92 TLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHMT  171 (212)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~lD~~~~~~~~~  171 (212)
                      .++.....  ..          -+++..|..+.....+.+||       .+++++..++.++++|.++      ...+.+
T Consensus       205 ~~~~~~~~--d~----------vliDtaG~~~~~~~l~~eL~-------~i~ral~~de~llvLDa~t------~~~~~~  259 (328)
T 3e70_C          205 QHAKARGI--DV----------VLIDTAGRSETNRNLMDEMK-------KIARVTKPNLVIFVGDALA------GNAIVE  259 (328)
T ss_dssp             HHHHHHTC--SE----------EEEEECCSCCTTTCHHHHHH-------HHHHHHCCSEEEEEEEGGG------TTHHHH
T ss_pred             HHHHhccc--hh----------hHHhhccchhHHHHHHHHHH-------HHHHHhcCCCCEEEEecHH------HHHHHH
Confidence            87532110  00          01122233322223333333       4888887666666666444      445666


Q ss_pred             HHHHHHhh
Q psy8250         172 LMARLKMD  179 (212)
Q Consensus       172 ~l~~l~~~  179 (212)
                      .++.+++.
T Consensus       260 ~~~~~~~~  267 (328)
T 3e70_C          260 QARQFNEA  267 (328)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            66666644

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=99.56  E-value=9.5e-17  Score=135.61  Aligned_cols=119  Identities=18%  Similarity=0.169  Sum_probs=70.9

Q ss_pred             EEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEE---CCEeCCcc-cccce-EEEEcCCCCCCC----CCCHHH
Q psy8250          19 GIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILL---NGLEVEKN-LMVKV-SGFVPQHDLTVD----TLTVHE   89 (212)
Q Consensus        19 ~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~---~g~~~~~~-~~~~~-i~~v~Q~~~~~~----~ltv~e   89 (212)
                      +++.+|++++|+||||||||||+|+|+|...| .+|+|.+   +|+.++.. .+.+. ++|++|+|.+..    .+|+ |
T Consensus       168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~-~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e  245 (307)
T 1t9h_A          168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGL-RTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-E  245 (307)
T ss_dssp             GGGGTTSEEEEEESHHHHHHHHHHHHCC--------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred             HhhcCCCEEEEECCCCCCHHHHHHHhcccccc-cccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-H
Confidence            56789999999999999999999999999988 6999998   88776542 22222 699999997765    6789 8


Q ss_pred             HHH--HHHh--h----hcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHH
Q psy8250          90 HMT--LMAR--L----KMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKR  139 (212)
Q Consensus        90 ~l~--~~~~--~----~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqR  139 (212)
                      ++.  |...  +    +........+....+.++++.+++.+...+....++.|++||
T Consensus       246 ~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~~  303 (307)
T 1t9h_A          246 ELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDR  303 (307)
T ss_dssp             HHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhc
Confidence            883  3311  1    000001111233568899999999876555566777788773

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.56  E-value=1.6e-16  Score=139.47  Aligned_cols=133  Identities=19%  Similarity=0.124  Sum_probs=82.7

Q ss_pred             eeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEE----------cCCCCCCC
Q psy8250          14 KESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFV----------PQHDLTVD   83 (212)
Q Consensus        14 l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v----------~Q~~~~~~   83 (212)
                      -++++|+++.|+.++|+|+|||||||||++|++..+       .+.+.+.+.  ....++++          .+.|.+..
T Consensus       147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~-------~i~~~~ftT--l~p~~G~V~~~~~~~~~l~DtpGli~  217 (416)
T 1udx_A          147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP-------KIAPYPFTT--LSPNLGVVEVSEEERFTLADIPGIIE  217 (416)
T ss_dssp             EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC-------EECCCTTCS--SCCEEEEEECSSSCEEEEEECCCCCC
T ss_pred             EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc-------cccCcccce--ecceeeEEEecCcceEEEEecccccc
Confidence            479999999999999999999999999999999732       122222211  11123333          33333322


Q ss_pred             CCCHHHHHHHHHhhhcccCCCHHH--HHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-
Q psy8250          84 TLTVHEHMTLMARLKMDRNLHHVE--RARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-  160 (212)
Q Consensus        84 ~ltv~e~l~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-  160 (212)
                      ...  ++          ..+....  ..++++.++..+++.   +.++.+||+|++|++.+|++|+.+|.++++    + 
T Consensus       218 ~a~--~~----------~~L~~~fl~~~era~~lL~vvDls---~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NK  278 (416)
T 1udx_A          218 GAS--EG----------KGLGLEFLRHIARTRVLLYVLDAA---DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NK  278 (416)
T ss_dssp             CGG--GS----------CCSCHHHHHHHTSSSEEEEEEETT---SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----EC
T ss_pred             chh--hh----------hhhhHHHHHHHHHHHhhhEEeCCc---cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----EC
Confidence            100  00          0111100  011122233333443   566788999999999999999999999999    7 


Q ss_pred             CChhhHHHHHHHHHH
Q psy8250         161 VDTLTVHEHMTLMAR  175 (212)
Q Consensus       161 lD~~~~~~~~~~l~~  175 (212)
                      +|+... ..++.+.+
T Consensus       279 lDl~~~-~~~~~l~~  292 (416)
T 1udx_A          279 VDLLEE-EAVKALAD  292 (416)
T ss_dssp             CTTSCH-HHHHHHHH
T ss_pred             CChhhH-HHHHHHHH
Confidence            999877 44444433

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=99.55  E-value=2.2e-17  Score=131.68  Aligned_cols=133  Identities=14%  Similarity=0.155  Sum_probs=78.2

Q ss_pred             EcCCcEEEEECCCCccHHHHHHHHHcCCCCC--CceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHHHHHHhhh
Q psy8250          21 AESGSLLAIMGPSGAGKTTLLACISQRIQGD--VDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLK   98 (212)
Q Consensus        21 i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~--~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~   98 (212)
                      .++|++++|+||||||||||+++|+|++.|.  ..|.|.++|..+..                    +..+++.......
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~--------------------~~~~~~~~~~~~~   78 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDN--------------------RLLEPRGLLPRKG   78 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCH--------------------HHHGGGTCGGGTT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCH--------------------HHHHHhcccccCC
Confidence            5789999999999999999999999998751  24555544443321                    1111110000000


Q ss_pred             cccCCCHHHHHHHHHHHHHHc--C--CccccCCCCCCCChHHHHHHHHH-HHHhhCCCeEEecCCC-----------C-C
Q psy8250          99 MDRNLHHVERARTVDALLKEL--G--LLKCKNSVLNVLSGGERKRVALA-VQTIIVQSGFVPQHDL-----------T-V  161 (212)
Q Consensus        99 ~~~~~~~~~~~~~~~~~l~~~--g--l~~~~~~~~~~LSgGqrqRv~lA-~al~~~p~llilDEPt-----------~-l  161 (212)
                      ......    ...+.+.+..+  +  +..........+|+||+||+++| ++++.++.++++|||.           . +
T Consensus        79 ~~~~~~----~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~v  154 (208)
T 3c8u_A           79 APETFD----FEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRL  154 (208)
T ss_dssp             SGGGBC----HHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEE
T ss_pred             CCchhh----HHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEE
Confidence            000001    11112222222  1  11111222345799999999998 9999999999999985           3 5


Q ss_pred             ChhhHHHHHHHHHHHH
Q psy8250         162 DTLTVHEHMTLMARLK  177 (212)
Q Consensus       162 D~~~~~~~~~~l~~l~  177 (212)
                      |......+..++++..
T Consensus       155 d~~~~~~~~R~~~R~~  170 (208)
T 3c8u_A          155 EVPMADLEARLVQRWL  170 (208)
T ss_dssp             CCCHHHHHHHHHHHHH
T ss_pred             eCCHHHHHHHHHHHHH
Confidence            6666666677776653

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=99.52  E-value=2.5e-19  Score=149.27  Aligned_cols=145  Identities=13%  Similarity=0.167  Sum_probs=99.5

Q ss_pred             ccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEEEcCCC-CCC
Q psy8250           7 LFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGFVPQHD-LTV   82 (212)
Q Consensus         7 ~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~v~Q~~-~~~   82 (212)
                      .|++..+++++++.+++|  ++|+||||||||||+++|+|...+   |.|.++|.++...   ...+.++++||.. ...
T Consensus        29 ~~~~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~---~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~  103 (274)
T 2x8a_A           29 PVRNPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL---NFISVKGPELLNMYVGESERAVRQVFQRAKNSA  103 (274)
T ss_dssp             HHHSHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC---EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTC
T ss_pred             HhhCHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC---CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcC
Confidence            355667899999999999  999999999999999999997753   6899999876432   1234567777764 334


Q ss_pred             CCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCC---
Q psy8250          83 DTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDL---  159 (212)
Q Consensus        83 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt---  159 (212)
                      +.+++.|++......+   .    ..  ..    .  ......++.+.+|||||+||+.+++|+..+|++|  |||+   
T Consensus       104 p~i~~~Deid~~~~~r---~----~~--~~----~--~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~  166 (274)
T 2x8a_A          104 PCVIFFDEVDALCPRR---S----DR--ET----G--ASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRP  166 (274)
T ss_dssp             SEEEEEETCTTTCC------------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHST
T ss_pred             CCeEeeehhhhhhccc---C----CC--cc----h--HHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCc
Confidence            4455555554321100   0    00  00    0  1223345567789999999999999999999975  9985   


Q ss_pred             ---------C-CChhhHHHHHHHH
Q psy8250         160 ---------T-VDTLTVHEHMTLM  173 (212)
Q Consensus       160 ---------~-lD~~~~~~~~~~l  173 (212)
                               . -|...+.++++.+
T Consensus       167 gRfd~~i~~~~P~~~~r~~il~~~  190 (274)
T 2x8a_A          167 GRLDKTLFVGLPPPADRLAILKTI  190 (274)
T ss_dssp             TSSCEEEECCSCCHHHHHHHHHHH
T ss_pred             ccCCeEEEeCCcCHHHHHHHHHHH
Confidence                     2 3666777776654

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=99.49  E-value=5e-16  Score=131.23  Aligned_cols=92  Identities=15%  Similarity=0.242  Sum_probs=75.0

Q ss_pred             cccccccCCcceeeeeEEEE-------------------cCCcEEEEECCCCccHHHHHHHHHcCCC--CCCceEEEE--
Q psy8250           2 ETFHPLFGDTNYKESLSGIA-------------------ESGSLLAIMGPSGAGKTTLLACISQRIQ--GDVDGQILL--   58 (212)
Q Consensus         2 ~~l~~~~~~~~~l~~vs~~i-------------------~~Ge~~~iiGpnGaGKSTLl~~i~g~~~--p~~~G~I~~--   58 (212)
                      +++++.|+  .+++++++.+                   .+|+++||+||||||||||+++|+|++.  | ++|+|.+  
T Consensus        41 ~~v~~~y~--~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~-~~G~i~vi~  117 (308)
T 1sq5_A           41 EEVAEIYL--PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWP-EHRRVELIT  117 (308)
T ss_dssp             HHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTST-TCCCEEEEE
T ss_pred             HhHHHHHH--HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCC-CCCeEEEEe
Confidence            56778884  6889999988                   8999999999999999999999999887  8 6999999  


Q ss_pred             -CCEeCCcccccceEEEEcCCCCCCCCCCHHHHHHHHHhhh
Q psy8250          59 -NGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLK   98 (212)
Q Consensus        59 -~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~   98 (212)
                       +|..... ..++.++++ |...+++.+++.+++.+...+.
T Consensus       118 ~d~~~~~~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~  156 (308)
T 1sq5_A          118 TDGFLHPN-QVLKERGLM-KKKGFPESYDMHRLVKFVSDLK  156 (308)
T ss_dssp             GGGGBCCH-HHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred             cCCccCcH-HHHHhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence             8876532 223456888 8777778889999988765543

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=99.49  E-value=3.1e-14  Score=110.79  Aligned_cols=64  Identities=17%  Similarity=0.115  Sum_probs=54.0

Q ss_pred             cCCCCCCCChHHHHHHHHHHHHhhC----CCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHH
Q psy8250         125 KNSVLNVLSGGERKRVALAVQTIIV----QSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERA  188 (212)
Q Consensus       125 ~~~~~~~LSgGqrqRv~lA~al~~~----p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~  188 (212)
                      ..+++..||||||||++||++|+.+    |+++||||||+ ||+.+...+.++|+++....    .+|+....
T Consensus        58 ~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~  130 (173)
T 3kta_B           58 DVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMM  130 (173)
T ss_dssp             SCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH
T ss_pred             cccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHH
Confidence            3456789999999999999999854    59999999999 99999999999999986543    26876543

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=99.47  E-value=3.5e-14  Score=119.92  Aligned_cols=114  Identities=15%  Similarity=0.166  Sum_probs=81.6

Q ss_pred             eeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHHHHHH
Q psy8250          16 SLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMA   95 (212)
Q Consensus        16 ~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~   95 (212)
                      .+++...+|++++|+|||||||||+++.|++.+.+ ..|+|.+.+.+....                   ...+      
T Consensus        96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~-~g~kV~lv~~D~~r~-------------------~a~e------  149 (306)
T 1vma_A           96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVD-EGKSVVLAAADTFRA-------------------AAIE------  149 (306)
T ss_dssp             CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEECTTCH-------------------HHHH------
T ss_pred             CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHh-cCCEEEEEccccccH-------------------HHHH------
Confidence            45666789999999999999999999999999887 578888765543110                   0011      


Q ss_pred             hhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHH---HHHHHHhhCCCeEEecCCCCCChhhHHHHHHH
Q psy8250          96 RLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRV---ALAVQTIIVQSGFVPQHDLTVDTLTVHEHMTL  172 (212)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv---~lA~al~~~p~llilDEPt~lD~~~~~~~~~~  172 (212)
                                     .+..+++.+++..     +...|+|+.+++   ++++|+..+|+++|+|||..+  .....+++.
T Consensus       150 ---------------qL~~~~~~~gl~~-----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~~--~~~~~l~~e  207 (306)
T 1vma_A          150 ---------------QLKIWGERVGATV-----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGRL--HTKKNLMEE  207 (306)
T ss_dssp             ---------------HHHHHHHHHTCEE-----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCCC--SCHHHHHHH
T ss_pred             ---------------HHHHHHHHcCCcE-----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCch--hhHHHHHHH
Confidence                           1223445566653     235689999999   999999999999999999862  334445544


Q ss_pred             HHHHH
Q psy8250         173 MARLK  177 (212)
Q Consensus       173 l~~l~  177 (212)
                      |.+++
T Consensus       208 L~~l~  212 (306)
T 1vma_A          208 LRKVH  212 (306)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            54443

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.47  E-value=3.5e-14  Score=107.78  Aligned_cols=82  Identities=13%  Similarity=0.187  Sum_probs=61.5

Q ss_pred             eeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCce--EEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHH
Q psy8250          13 YKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDG--QILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEH   90 (212)
Q Consensus        13 ~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G--~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~   90 (212)
                      +++++     +|+.++|+||||||||||+++|++.+.+  +|  .+++++.++.                  ..      
T Consensus        30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~--~g~~~~~~~~~~~~------------------~~------   78 (149)
T 2kjq_A           30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE--AGKNAAYIDAASMP------------------LT------   78 (149)
T ss_dssp             HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT--TTCCEEEEETTTSC------------------CC------
T ss_pred             HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh--cCCcEEEEcHHHhh------------------HH------
Confidence            45555     8999999999999999999999998765  45  3333332210                  00      


Q ss_pred             HHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCCCChhhHHHHH
Q psy8250          91 MTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHM  170 (212)
Q Consensus        91 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~lD~~~~~~~~  170 (212)
                                                                            +++.+|++|++|||+++++..++.++
T Consensus        79 ------------------------------------------------------~~~~~~~lLilDE~~~~~~~~~~~l~  104 (149)
T 2kjq_A           79 ------------------------------------------------------DAAFEAEYLAVDQVEKLGNEEQALLF  104 (149)
T ss_dssp             ------------------------------------------------------GGGGGCSEEEEESTTCCCSHHHHHHH
T ss_pred             ------------------------------------------------------HHHhCCCEEEEeCccccChHHHHHHH
Confidence                                                                  23568999999999997666688899


Q ss_pred             HHHHHHHhh
Q psy8250         171 TLMARLKMD  179 (212)
Q Consensus       171 ~~l~~l~~~  179 (212)
                      +++.++.++
T Consensus       105 ~li~~~~~~  113 (149)
T 2kjq_A          105 SIFNRFRNS  113 (149)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHc
Confidence            999887664

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=99.46  E-value=3.1e-14  Score=113.20  Aligned_cols=125  Identities=18%  Similarity=0.128  Sum_probs=74.0

Q ss_pred             ceeeeeEE-EEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHH
Q psy8250          12 NYKESLSG-IAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEH   90 (212)
Q Consensus        12 ~~l~~vs~-~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~   90 (212)
                      ..|+.+.. -+++|++++|+||||||||||++.+++  .+ ..+.++++.                 +..+    +.. .
T Consensus         7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~-~~~v~~i~~-----------------~~~~----~~~-~   61 (220)
T 2cvh_A            7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LS-GKKVAYVDT-----------------EGGF----SPE-R   61 (220)
T ss_dssp             HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HH-CSEEEEEES-----------------SCCC----CHH-H
T ss_pred             HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--Hc-CCcEEEEEC-----------------CCCC----CHH-H
Confidence            34555553 689999999999999999999999998  32 233333322                 1111    111 1


Q ss_pred             HHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHH--HHHHHHHHHHhhC-CCeEEecCCCC-CChhhH
Q psy8250          91 MTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGE--RKRVALAVQTIIV-QSGFVPQHDLT-VDTLTV  166 (212)
Q Consensus        91 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq--rqRv~lA~al~~~-p~llilDEPt~-lD~~~~  166 (212)
                      +.-....   .....       +++++.+.        +...|+++  +|++..+++++.+ |+++|+|||++ +|+...
T Consensus        62 ~~~~~~~---~~~~~-------~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~  123 (220)
T 2cvh_A           62 LVQMAET---RGLNP-------EEALSRFI--------LFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEEN  123 (220)
T ss_dssp             HHHHHHT---TTCCH-------HHHHHHEE--------EECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGG
T ss_pred             HHHHHHh---cCCCh-------HHHhhcEE--------EEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCc
Confidence            1110110   01111       12233221        23345553  5788888999986 99999999999 887432


Q ss_pred             --------HHHHHHHHHHHhh
Q psy8250         167 --------HEHMTLMARLKMD  179 (212)
Q Consensus       167 --------~~~~~~l~~l~~~  179 (212)
                              .++++.|+++.++
T Consensus       124 ~~~~~~~~~~~~~~L~~l~~~  144 (220)
T 2cvh_A          124 RSGLIAELSRQLQVLLWIARK  144 (220)
T ss_dssp             SSTTHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHH
Confidence                    3455556666554

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=99.44  E-value=1.9e-13  Score=114.82  Aligned_cols=128  Identities=16%  Similarity=0.116  Sum_probs=88.8

Q ss_pred             ccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCC
Q psy8250           3 TFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTV   82 (212)
Q Consensus         3 ~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~   82 (212)
                      ++++.|+...  ++++|+  +|++++++|+||+||||++..|++.+.+ ..|+|.+.+.++.....              
T Consensus        81 ~l~~~~~~~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~-~~~~v~l~~~d~~~~~~--------------  141 (295)
T 1ls1_A           81 ALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG-KGRRPLLVAADTQRPAA--------------  141 (295)
T ss_dssp             HHHHHTTSSC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHH-TTCCEEEEECCSSCHHH--------------
T ss_pred             HHHHHHCCCC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEecCCcccHhH--------------
Confidence            4666776543  788888  9999999999999999999999999887 58888887655421100              


Q ss_pred             CCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC-CC-
Q psy8250          83 DTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD-LT-  160 (212)
Q Consensus        83 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP-t~-  160 (212)
                          . +.+                     ..+.+..++.-.....  ..+..+.+|.+|+.+...+++++|+||| +. 
T Consensus       142 ----~-~ql---------------------~~~~~~~~l~~~~~~~--~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~  193 (295)
T 1ls1_A          142 ----R-EQL---------------------RLLGEKVGVPVLEVMD--GESPESIRRRVEEKARLEARDLILVDTAGRLQ  193 (295)
T ss_dssp             ----H-HHH---------------------HHHHHHHTCCEEECCT--TCCHHHHHHHHHHHHHHHTCCEEEEECCCCSS
T ss_pred             ----H-HHH---------------------HHhcccCCeEEEEcCC--CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcc
Confidence                0 000                     0112334554321111  1234456789999988899999999999 66 


Q ss_pred             CChhhHHHHHHHHHHHH
Q psy8250         161 VDTLTVHEHMTLMARLK  177 (212)
Q Consensus       161 lD~~~~~~~~~~l~~l~  177 (212)
                      +|.....++.++...+.
T Consensus       194 ~d~~~~~~l~~~~~~~~  210 (295)
T 1ls1_A          194 IDEPLMGELARLKEVLG  210 (295)
T ss_dssp             CCHHHHHHHHHHHHHHC
T ss_pred             ccHHHHHHHHHHhhhcC
Confidence            89888888877766654

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.41  E-value=2.9e-15  Score=130.45  Aligned_cols=160  Identities=12%  Similarity=0.118  Sum_probs=106.3

Q ss_pred             EEcCCcEEEEECCCCccHHHHHHHHHc------------CCCCCCceEEEECCEeCCcc----cccceE---EEEcCCCC
Q psy8250          20 IAESGSLLAIMGPSGAGKTTLLACISQ------------RIQGDVDGQILLNGLEVEKN----LMVKVS---GFVPQHDL   80 (212)
Q Consensus        20 ~i~~Ge~~~iiGpnGaGKSTLl~~i~g------------~~~p~~~G~I~~~g~~~~~~----~~~~~i---~~v~Q~~~   80 (212)
                      .+.+|..+||+|+||||||||+++|+|            ...| ..|.+.+.|..+...    ..++.+   .++.+.+.
T Consensus        16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p-~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pG   94 (392)
T 1ni3_A           16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDP-EEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAG   94 (392)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCT-TEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGG
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecc-eeeeeeeCCcchhhhhhhcccccccCcceEEEeccc
Confidence            467899999999999999999999999            4456 699999988543210    112222   47778888


Q ss_pred             CCCCCCHHHHH--HHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCC--CeEEec
Q psy8250          81 TVDTLTVHEHM--TLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQ--SGFVPQ  156 (212)
Q Consensus        81 ~~~~ltv~e~l--~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p--~llilD  156 (212)
                      ++...+..+++  .|...++.            ++.++..++..  .+..+..+|++.            +|  ++.++|
T Consensus        95 l~~~~s~~e~L~~~fl~~ir~------------~d~il~Vvd~~--~d~~i~~v~~~~------------dP~~di~ild  148 (392)
T 1ni3_A           95 LTKGASTGVGLGNAFLSHVRA------------VDAIYQVVRAF--DDAEIIHVEGDV------------DPIRDLSIIV  148 (392)
T ss_dssp             GCCCCCSSSSSCHHHHHHHTT------------CSEEEEEEECC--CTTCSSCCSSSS------------CHHHHHHHHH
T ss_pred             cccCCcHHHHHHHHHHHHHHH------------HHHHHHHHhcc--ccceeeeecccc------------Ccchhhhhch
Confidence            88777765544  33222211            01111111111  134444566653            89  999999


Q ss_pred             CCCC-CChhhHHHHHHHHHHH-HhhcC---cchHHHHHHH---H-HHHHhc-CeeecCCc
Q psy8250         157 HDLT-VDTLTVHEHMTLMARL-KMDRN---LHHVERARTV---D-ALLKEL-GLLKCRPA  206 (212)
Q Consensus       157 EPt~-lD~~~~~~~~~~l~~l-~~~~~---~h~~~~~~~~---~-~~l~~g-~~~~~~~~  206 (212)
                      ||+. +|+...+..++.+.++ .....   +|.++.+...   . ..|.+| +.+..++.
T Consensus       149 eel~~~D~~~~~k~~~~l~~~~~~~g~ti~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~  208 (392)
T 1ni3_A          149 DELLIKDAEFVEKHLEGLRKITSRGANTLEMKAKKEEQAIIEKVYQYLTETKQPIRKGDW  208 (392)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCSSCSSSHHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence            9999 8999999999988887 44321   6877665442   2 378899 88877753

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=99.41  E-value=2.7e-17  Score=130.52  Aligned_cols=37  Identities=16%  Similarity=-0.000  Sum_probs=29.9

Q ss_pred             HHH-HHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHh
Q psy8250         142 LAV-QTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKM  178 (212)
Q Consensus       142 lA~-al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~  178 (212)
                      .|+ +++.+|++++||||++ +|..+.+.+.+.|.+...
T Consensus       116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~  154 (198)
T 1lvg_A          116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAART  154 (198)
T ss_dssp             CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            455 6788888999999999 999888888887777643

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=99.41  E-value=1.5e-17  Score=138.23  Aligned_cols=137  Identities=13%  Similarity=0.149  Sum_probs=91.9

Q ss_pred             cccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEEEcCC
Q psy8250           2 ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGFVPQH   78 (212)
Q Consensus         2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~v~Q~   78 (212)
                      +++.+.|++..+++++++.+++|  ++|+||||||||||+++|++...   .|.|.+++.++...   ...+.+++++|.
T Consensus        53 ~~l~~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~---~~~i~~~~~~~~~~~~~~~~~~i~~~~~~  127 (278)
T 1iy2_A           53 KEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDFVEMFVGVGAARVRDLFET  127 (278)
T ss_dssp             HHHHHHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHHHHHHSTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC---CCEEEecHHHHHHHHhhHHHHHHHHHHHH
Confidence            35566777777899999999999  89999999999999999999763   68899988665221   122345677776


Q ss_pred             CC-CCCCCCHHHHHHHHHhhhcc-cCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250          79 DL-TVDTLTVHEHMTLMARLKMD-RNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ  156 (212)
Q Consensus        79 ~~-~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD  156 (212)
                      .. ..+.+++.|++......... ......+....+..+             ..+|||||+||+.+++|+..+|++  +|
T Consensus       128 ~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~l-------------l~~lsgg~~~~~~i~~a~t~~p~~--ld  192 (278)
T 1iy2_A          128 AKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL-------------LVEMDGFEKDTAIVVMAATNRPDI--LD  192 (278)
T ss_dssp             HHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHH-------------HHHHTTCCTTCCEEEEEEESCTTS--SC
T ss_pred             HHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHH-------------HHHHhCCCCCCCEEEEEecCCchh--CC
Confidence            43 45566777777543221100 000011222223333             245899999999999999999987  56


Q ss_pred             CC
Q psy8250         157 HD  158 (212)
Q Consensus       157 EP  158 (212)
                      ++
T Consensus       193 ~~  194 (278)
T 1iy2_A          193 PA  194 (278)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=99.40  E-value=4.1e-14  Score=125.96  Aligned_cols=54  Identities=15%  Similarity=-0.009  Sum_probs=49.9

Q ss_pred             CCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCC
Q psy8250           9 GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE   64 (212)
Q Consensus         9 ~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~   64 (212)
                      .+..+|+++||+|++ ++++|+||||||||||+++|+|++.| ++|+|.++|+++.
T Consensus        15 ~~~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p-~~G~I~~~g~~~~   68 (483)
T 3euj_A           15 INWNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIP-DLTLLNFRNTTEA   68 (483)
T ss_dssp             EEETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCC-CTTTCCCCCTTSC
T ss_pred             eccccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCC-CCCEEEECCEEcc
Confidence            446789999999999 99999999999999999999999998 6999999998764

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.40  E-value=2.5e-13  Score=115.69  Aligned_cols=124  Identities=13%  Similarity=0.025  Sum_probs=64.3

Q ss_pred             EEEEECCCCccHHHHHHHHHc-CCCCCCceEEEECCEeCCcc-cccceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQ-RIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNL  103 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g-~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~  103 (212)
                      .+.|.||||+|||||+++|++ ++.| ..|.+.++|.+.... .....+++++|.+.+....+-.         .   ..
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~~l~~~-~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~---~~  104 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLESIFGP-GVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDM---------G---NN  104 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHHHSCT-TCCC------------------CCEECSSEEEECCC----------------C
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHcCC-CCCeEEecceeecccccccceeeeecccceEEecHhhc---------C---Cc
Confidence            389999999999999999999 6777 699999998776432 2244577888765432111100         0   00


Q ss_pred             CHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCCCChhhHHHHHHHHHHHHh
Q psy8250         104 HHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHMTLMARLKM  178 (212)
Q Consensus       104 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~lD~~~~~~~~~~l~~l~~  178 (212)
                      ...    .+.+.++.+......+... .|||           +..+|+++|+|||+++|+.++..+++.|.+...
T Consensus       105 ~~~----~~~~~i~~~~~~~~~~~~~-~ls~-----------l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~  163 (354)
T 1sxj_E          105 DRI----VIQELLKEVAQMEQVDFQD-SKDG-----------LAHRYKCVIINEANSLTKDAQAALRRTMEKYSK  163 (354)
T ss_dssp             CHH----HHHHHHHHHTTTTC------------------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTT
T ss_pred             chH----HHHHHHHHHHHhccccccc-cccc-----------cCCCCeEEEEeCccccCHHHHHHHHHHHHhhcC
Confidence            110    1223333322111111111 5666           788999999999999999999999999987643

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=99.39  E-value=1.7e-17  Score=135.81  Aligned_cols=138  Identities=14%  Similarity=0.160  Sum_probs=91.2

Q ss_pred             cccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEEEcCC
Q psy8250           2 ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGFVPQH   78 (212)
Q Consensus         2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~v~Q~   78 (212)
                      +++.+.|++..+++++++.+++|  ++|+||||+|||||+++|++...   .|.+.+++.++...   ...+.+++++|.
T Consensus        29 ~~l~~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~---~~~i~~~~~~~~~~~~~~~~~~i~~~~~~  103 (254)
T 1ixz_A           29 KEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDFVEMFVGVGAARVRDLFET  103 (254)
T ss_dssp             HHHHHHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHHHHHHSCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC---CCEEEeeHHHHHHHHhhHHHHHHHHHHHH
Confidence            34566677777899999999999  89999999999999999999763   68899888665221   122345677776


Q ss_pred             CC-CCCCCCHHHHHHHHHhhhccc-CCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250          79 DL-TVDTLTVHEHMTLMARLKMDR-NLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ  156 (212)
Q Consensus        79 ~~-~~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD  156 (212)
                      .. ..+.+++.|++.......... .....+....+..++             ..|||||+||+.+++|+..+|++  +|
T Consensus       104 ~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll-------------~~l~g~~~~~~~i~~a~t~~p~~--ld  168 (254)
T 1ixz_A          104 AKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL-------------VEMDGFEKDTAIVVMAATNRPDI--LD  168 (254)
T ss_dssp             HTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHH-------------HHHHTCCTTCCEEEEEEESCGGG--SC
T ss_pred             HHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHH-------------HHHhCCCCCCCEEEEEccCCchh--CC
Confidence            42 445566777774432211100 001112222233333             35789999999999999999987  56


Q ss_pred             CCC
Q psy8250         157 HDL  159 (212)
Q Consensus       157 EPt  159 (212)
                      ++.
T Consensus       169 ~~l  171 (254)
T 1ixz_A          169 PAL  171 (254)
T ss_dssp             GGG
T ss_pred             HHH
Confidence            653

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=99.39  E-value=3.4e-13  Score=104.55  Aligned_cols=99  Identities=16%  Similarity=0.133  Sum_probs=64.6

Q ss_pred             EEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHHHHHHhh
Q psy8250          18 SGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARL   97 (212)
Q Consensus        18 s~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~   97 (212)
                      +|.+.+|+.++|+||||+|||||+++|++.+.| .+|..               +.|          .++.+.+..... 
T Consensus        32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~~g~~---------------~~~----------~~~~~~~~~~~~-   84 (180)
T 3ec2_A           32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYE-KKGIR---------------GYF----------FDTKDLIFRLKH-   84 (180)
T ss_dssp             SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHH-HSCCC---------------CCE----------EEHHHHHHHHHH-
T ss_pred             hccccCCCEEEEECCCCCCHHHHHHHHHHHHHH-HcCCe---------------EEE----------EEHHHHHHHHHH-
Confidence            456788999999999999999999999998865 34421               011          123332221110 


Q ss_pred             hcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC--CChhhHHHHHHHHHH
Q psy8250          98 KMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT--VDTLTVHEHMTLMAR  175 (212)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~--lD~~~~~~~~~~l~~  175 (212)
                                       ....-.           ..        -+...+.+|++||+|||++  +|+..+..+.+++.+
T Consensus        85 -----------------~~~~~~-----------~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~  128 (180)
T 3ec2_A           85 -----------------LMDEGK-----------DT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITY  128 (180)
T ss_dssp             -----------------HHHHTC-----------CS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHH
T ss_pred             -----------------HhcCch-----------HH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHH
Confidence                             000000           00        1122345999999999995  899999999999988


Q ss_pred             HHhh
Q psy8250         176 LKMD  179 (212)
Q Consensus       176 l~~~  179 (212)
                      ...+
T Consensus       129 ~~~~  132 (180)
T 3ec2_A          129 RYNN  132 (180)
T ss_dssp             HHHT
T ss_pred             HHHc
Confidence            7654

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=99.35  E-value=4.8e-15  Score=135.73  Aligned_cols=166  Identities=14%  Similarity=0.070  Sum_probs=105.7

Q ss_pred             cccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCC
Q psy8250           4 FHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVD   83 (212)
Q Consensus         4 l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~   83 (212)
                      ++..||...+++++++.+.+|+.++|+||||+|||||+++|++++.+...|.+.+++.+...  ....++++|+...-  
T Consensus        40 l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~--~~p~i~~~p~g~~~--  115 (604)
T 3k1j_A           40 IDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDE--NMPRIKTVPACQGR--  115 (604)
T ss_dssp             HHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCT--TSCEEEEEETTHHH--
T ss_pred             cceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccc--cCCcEEEEecchHH--
Confidence            44557778899999999999999999999999999999999999987434888888776543  23457888774310  


Q ss_pred             CCCHHHHHHHHHhhhccc-CC---------------------CHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHH
Q psy8250          84 TLTVHEHMTLMARLKMDR-NL---------------------HHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVA  141 (212)
Q Consensus        84 ~ltv~e~l~~~~~~~~~~-~~---------------------~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~  141 (212)
                        .+.+............ ..                     .............+.+|..+......+.+|+|++|++.
T Consensus       116 --~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~g~~~~i~  193 (604)
T 3k1j_A          116 --RIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGTPAHERVE  193 (604)
T ss_dssp             --HHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CCCCGGGGEE
T ss_pred             --HHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCcccccccccc
Confidence              0111111100000000 00                     00000000001122233222222333679999999999


Q ss_pred             HHHHHhhCCCeEEecCCCCCChhhHHHHHHHHHH
Q psy8250         142 LAVQTIIVQSGFVPQHDLTVDTLTVHEHMTLMAR  175 (212)
Q Consensus       142 lA~al~~~p~llilDEPt~lD~~~~~~~~~~l~~  175 (212)
                      .++....++.+|++||...+++..+..+++.|.+
T Consensus       194 ~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~  227 (604)
T 3k1j_A          194 PGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQE  227 (604)
T ss_dssp             CCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHH
T ss_pred             CceeeecCCCEEEEechhhCCHHHHHHHHHHHHc
Confidence            9999999999999999999999888888888864

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=99.35  E-value=9e-13  Score=106.20  Aligned_cols=43  Identities=16%  Similarity=0.244  Sum_probs=33.8

Q ss_pred             EEcCCcEEEEECCCCccHHHHHHHHHc--CCCC----CCceEEEECCEe
Q psy8250          20 IAESGSLLAIMGPSGAGKTTLLACISQ--RIQG----DVDGQILLNGLE   62 (212)
Q Consensus        20 ~i~~Ge~~~iiGpnGaGKSTLl~~i~g--~~~p----~~~G~I~~~g~~   62 (212)
                      -+++|++++|+||||||||||++.|++  ...|    ...|.+++++.+
T Consensus        20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~   68 (243)
T 1n0w_A           20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG   68 (243)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred             CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence            489999999999999999999999999  4443    125666666543

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=99.30  E-value=9.4e-14  Score=109.43  Aligned_cols=68  Identities=18%  Similarity=0.245  Sum_probs=47.9

Q ss_pred             EEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEEEcCCCCCCCCCCHHHH
Q psy8250          18 SGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEH   90 (212)
Q Consensus        18 s~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~v~Q~~~~~~~ltv~e~   90 (212)
                      |+++.+|++++|+||||||||||+++|+|++ |    .+.+.+..++..   ..+..++|+||++..++.+++.++
T Consensus         1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (205)
T 3tr0_A            1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL-A----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGA   71 (205)
T ss_dssp             ----CCCCEEEEECCTTSCHHHHHHHHHHHS-S----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTC
T ss_pred             CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC-C----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCc
Confidence            5778899999999999999999999999985 3    366777665432   124457899998766555554443

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=99.28  E-value=6e-14  Score=113.68  Aligned_cols=59  Identities=12%  Similarity=0.054  Sum_probs=41.9

Q ss_pred             EEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc-----------ccccceEEEEcCC
Q psy8250          18 SGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-----------NLMVKVSGFVPQH   78 (212)
Q Consensus        18 s~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~-----------~~~~~~i~~v~Q~   78 (212)
                      ++++.+ ++++|+||||||||||+++|+|++.| ++|+|.++|.++..           ...+..++|++|+
T Consensus        22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~   91 (227)
T 1qhl_A           22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIP-DLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD   91 (227)
T ss_dssp             EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSC-CTTTC------------------CGGGBCSSEEEEEEE
T ss_pred             EEEEcC-cEEEEECCCCCCHHHHHHHHhccccc-CCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence            566776 89999999999999999999999999 69999999987721           1134568999874

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.18  E-value=1.2e-11  Score=96.62  Aligned_cols=36  Identities=8%  Similarity=-0.071  Sum_probs=31.9

Q ss_pred             HHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHH
Q psy8250         138 KRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMAR  175 (212)
Q Consensus       138 qRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~  175 (212)
                      +.+.+|++++.+|+++++|  +| +|..+..++++.|.+
T Consensus       152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~  188 (191)
T 1oix_A          152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT  188 (191)
T ss_dssp             SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence            3467899999999999999  88 999999999988865

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=99.17  E-value=2.4e-11  Score=104.90  Aligned_cols=60  Identities=23%  Similarity=0.217  Sum_probs=51.0

Q ss_pred             CCCCCCChHHHHHH------HHHHHHhhC-CCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHH
Q psy8250         127 SVLNVLSGGERKRV------ALAVQTIIV-QSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVE  186 (212)
Q Consensus       127 ~~~~~LSgGqrqRv------~lA~al~~~-p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~  186 (212)
                      .++..|||||+||+      ++|++|+.+ |+++||||||+ ||+..+..+.+.|.++....    +||+.+
T Consensus       276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~  347 (371)
T 3auy_A          276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE  347 (371)
T ss_dssp             ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG
T ss_pred             cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH
Confidence            45678999999988      567888999 99999999999 99999999999998874322    378865

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=99.16  E-value=6.9e-11  Score=103.13  Aligned_cols=42  Identities=19%  Similarity=0.212  Sum_probs=31.9

Q ss_pred             EEcCCcEEEEECCCCccHHHHHHHH--HcCCCCCCc-----eEEEECCEe
Q psy8250          20 IAESGSLLAIMGPSGAGKTTLLACI--SQRIQGDVD-----GQILLNGLE   62 (212)
Q Consensus        20 ~i~~Ge~~~iiGpnGaGKSTLl~~i--~g~~~p~~~-----G~I~~~g~~   62 (212)
                      -|++|++++|+||||||||||++.+  .+..++ ..     +.+++++..
T Consensus       174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~-~~Gg~~~~viyid~E~  222 (400)
T 3lda_A          174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPL-DIGGGEGKCLYIDTEG  222 (400)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCG-GGTCCSSEEEEEESSS
T ss_pred             CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCc-ccCCCCCcEEEEeCCC
Confidence            4789999999999999999999944  555544 23     366666543

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=99.13  E-value=1.9e-11  Score=109.83  Aligned_cols=164  Identities=14%  Similarity=0.112  Sum_probs=97.1

Q ss_pred             ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEe-CCcccccceEEEEcCCCC----------
Q psy8250          12 NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLE-VEKNLMVKVSGFVPQHDL----------   80 (212)
Q Consensus        12 ~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~-~~~~~~~~~i~~v~Q~~~----------   80 (212)
                      .+++++++.+++|++++|+||||||||||+++|+|+++| .+|.|.+.|.. +.. .....++++.|...          
T Consensus       248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~-~~giitied~~E~~~-~~~~~v~~~~r~~~~~~~~~~~~~  325 (511)
T 2oap_1          248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPP-DAKVVSIEDTREIKL-YHENWIAEVTRTGMGEGEIDMYDL  325 (511)
T ss_dssp             HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCT-TCCEEEEESSCCCCC-CCSSEEEEECBCCSSSCCBCHHHH
T ss_pred             HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCC-CCCEEEEcCcccccC-CCCCeEEEEeecccccCCcCHHHH
Confidence            467889999999999999999999999999999999988 69999998864 221 11223444444322          


Q ss_pred             ------------CCCCCCHHHHHHHHHhhh-cccCCCHHHHHHHHHHHHHHcCC-----cc----ccC---CCCCCCChH
Q psy8250          81 ------------TVDTLTVHEHMTLMARLK-MDRNLHHVERARTVDALLKELGL-----LK----CKN---SVLNVLSGG  135 (212)
Q Consensus        81 ------------~~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~gl-----~~----~~~---~~~~~LSgG  135 (212)
                                  ++.+++..|++.+..... ....+.. .....+.++++++..     ..    ..+   .....+|+|
T Consensus       326 l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT-~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G  404 (511)
T 2oap_1          326 LRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYST-LHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGN  404 (511)
T ss_dssp             HHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEE-EECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSS
T ss_pred             HHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccc-cccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCC
Confidence                        123455555544432221 1000000 000112333444322     11    112   233468999


Q ss_pred             HHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-------cCcchHHHHHH
Q psy8250         136 ERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-------RNLHHVERART  190 (212)
Q Consensus       136 qrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-------~~~h~~~~~~~  190 (212)
                      |+||.++|.+           | ++ +|+.....+++.+.++..+       ..+|++++++.
T Consensus       405 ~~~R~~~ai~-----------E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~  455 (511)
T 2oap_1          405 TRLRRTKEVN-----------E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMAD  455 (511)
T ss_dssp             CEEEEEEEEE-----------E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHH
T ss_pred             CceEEEEEEE-----------E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHH
Confidence            9999877521           6 66 8887766666555555332       13688887654

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=99.12  E-value=1.2e-11  Score=99.61  Aligned_cols=39  Identities=26%  Similarity=0.360  Sum_probs=23.3

Q ss_pred             ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHH-cCCCC
Q psy8250          12 NYKESLSGIAESGSLLAIMGPSGAGKTTLLACIS-QRIQG   50 (212)
Q Consensus        12 ~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~-g~~~p   50 (212)
                      +..+++||++++|++++|+||||||||||+++|+ |++++
T Consensus        15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~   54 (231)
T 3lnc_A           15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN   54 (231)
T ss_dssp             -------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred             cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence            4678999999999999999999999999999999 98743

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=99.09  E-value=4.8e-14  Score=122.22  Aligned_cols=138  Identities=11%  Similarity=0.012  Sum_probs=82.2

Q ss_pred             ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCC-CCCCCCHHHH
Q psy8250          12 NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL-TVDTLTVHEH   90 (212)
Q Consensus        12 ~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~-~~~~ltv~e~   90 (212)
                      .+++++++.+++|++++|+||||||||||+++|+|.    .+|.+..-.  .........++++||... ++.+.+....
T Consensus       157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~----~~g~~~~~~--~~~~~~~~~lg~~~q~~~~l~dd~~~~~~  230 (377)
T 1svm_A          157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL----CGGKALNVN--LPLDRLNFELGVAIDQFLVVFEDVKGTGG  230 (377)
T ss_dssp             HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH----HCCEEECCS--SCTTTHHHHHGGGTTCSCEEETTCCCSTT
T ss_pred             HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh----cCCcEEEEe--ccchhHHHHHHHhcchhHHHHHHHHHHHH
Confidence            588999999999999999999999999999999984    367765511  111111223566676643 2222222111


Q ss_pred             HHHHHhhhcccCCCHHHHHHHHHHHHH---HcCCc-------------cccCCCCCCCChHHHHHHHHHHHHhhCCCeEE
Q psy8250          91 MTLMARLKMDRNLHHVERARTVDALLK---ELGLL-------------KCKNSVLNVLSGGERKRVALAVQTIIVQSGFV  154 (212)
Q Consensus        91 l~~~~~~~~~~~~~~~~~~~~~~~~l~---~~gl~-------------~~~~~~~~~LSgGqrqRv~lA~al~~~p~lli  154 (212)
                      +     .+.............+...+.   .+.++             ...+.....+++|+++|+..+++++..|++++
T Consensus       231 ~-----~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLli  305 (377)
T 1svm_A          231 E-----SRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKH  305 (377)
T ss_dssp             T-----TTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHH
T ss_pred             H-----HhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEE
Confidence            0     000000000000112223332   00011             12345567799999999999888888898888


Q ss_pred             -ecCCCC
Q psy8250         155 -PQHDLT  160 (212)
Q Consensus       155 -lDEPt~  160 (212)
                       ||+|+.
T Consensus       306 yLd~~~~  312 (377)
T 1svm_A          306 CLERSEF  312 (377)
T ss_dssp             HHHTCTH
T ss_pred             EEeCCHH
Confidence             898887

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.09  E-value=4.5e-10  Score=96.83  Aligned_cols=145  Identities=15%  Similarity=0.201  Sum_probs=87.2

Q ss_pred             CCcE-EEEECCCCccHHHHHHHHHcCCC-----------CCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHH
Q psy8250          23 SGSL-LAIMGPSGAGKTTLLACISQRIQ-----------GDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEH   90 (212)
Q Consensus        23 ~Ge~-~~iiGpnGaGKSTLl~~i~g~~~-----------p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~   90 (212)
                      .|-. ++|+|++|||||||++.|+|...           + ..|.|.++|.++   .+....|++.+.|..    .+...
T Consensus       177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~-~~~~i~~~g~~v---~l~DT~G~i~~lp~~----lve~f  248 (364)
T 2qtf_A          177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSP-KRYAIPINNRKI---MLVDTVGFIRGIPPQ----IVDAF  248 (364)
T ss_dssp             --CCEEEEECBTTSSHHHHHHHHHCC-----------CCS-CEEEEEETTEEE---EEEECCCBCSSCCGG----GHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCC-EEEEEEECCEEE---EEEeCCCchhcCCHH----HHHHH
Confidence            3444 99999999999999999999765           3 468888888654   223334555543211    12111


Q ss_pred             HHHHHhhhc-------c--cCCC--HHHHHHHHHHHHHHcCCcccc----CCCCCCCChHHHHHHHHH----HHH-hhCC
Q psy8250          91 MTLMARLKM-------D--RNLH--HVERARTVDALLKELGLLKCK----NSVLNVLSGGERKRVALA----VQT-IIVQ  150 (212)
Q Consensus        91 l~~~~~~~~-------~--~~~~--~~~~~~~~~~~l~~~gl~~~~----~~~~~~LSgGqrqRv~lA----~al-~~~p  150 (212)
                      -.....+..       .  ....  ..+....+.++++.+++.+..    ..++..+|+++++++.++    +++ ..+|
T Consensus       249 ~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~  328 (364)
T 2qtf_A          249 FVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIF  328 (364)
T ss_dssp             HHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEE
T ss_pred             HHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCC
Confidence            000011100       0  0111  122233456778887765432    345677898898988887    454 3334


Q ss_pred             CeEEecCCCC-CChhhHHHHHHHHHHHHhh
Q psy8250         151 SGFVPQHDLT-VDTLTVHEHMTLMARLKMD  179 (212)
Q Consensus       151 ~llilDEPt~-lD~~~~~~~~~~l~~l~~~  179 (212)
                      ++    +|+| +|..+...+++.|.++...
T Consensus       329 ~~----~~~SA~~g~gi~~L~~~I~~~l~~  354 (364)
T 2qtf_A          329 DV----IPISALKRTNLELLRDKIYQLATQ  354 (364)
T ss_dssp             EE----EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             cE----EEEECCCCcCHHHHHHHHHHHhcc
Confidence            44    8999 9999999999998886544

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.05  E-value=7.3e-12  Score=98.24  Aligned_cols=36  Identities=11%  Similarity=-0.069  Sum_probs=30.9

Q ss_pred             HHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHH
Q psy8250         140 VALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLK  177 (212)
Q Consensus       140 v~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~  177 (212)
                      ...|++++.+|.+.++|  +| +|..+..++++.|.+..
T Consensus       130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~  166 (199)
T 2f9l_A          130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI  166 (199)
T ss_dssp             HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence            35689999999999999  88 99999999998876643

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=99.03  E-value=6.1e-12  Score=99.27  Aligned_cols=76  Identities=16%  Similarity=0.069  Sum_probs=47.2

Q ss_pred             eeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccc--ccceEEEEcCCCCCCCCCCHHHH
Q psy8250          13 YKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL--MVKVSGFVPQHDLTVDTLTVHEH   90 (212)
Q Consensus        13 ~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~--~~~~i~~v~Q~~~~~~~ltv~e~   90 (212)
                      +.-.-.+..++|++++|+||||||||||+++|++.+     |.+.+++.++....  .+..+++++|++..++.+++.++
T Consensus        18 ~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~   92 (200)
T 4eun_A           18 LYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET-----GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAE   92 (200)
T ss_dssp             ----------CCCEEEEECCTTSCHHHHHHHHHHHH-----CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             hHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh-----CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHH
Confidence            343444667889999999999999999999999854     77889887764321  12235778876544444455555


Q ss_pred             HHH
Q psy8250          91 MTL   93 (212)
Q Consensus        91 l~~   93 (212)
                      +..
T Consensus        93 ~~~   95 (200)
T 4eun_A           93 WMD   95 (200)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=99.03  E-value=9.7e-11  Score=90.57  Aligned_cols=124  Identities=10%  Similarity=0.081  Sum_probs=68.9

Q ss_pred             Cccee--eeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCE--eC-C------cccccceEEEEcCC
Q psy8250          10 DTNYK--ESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGL--EV-E------KNLMVKVSGFVPQH   78 (212)
Q Consensus        10 ~~~~l--~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~--~~-~------~~~~~~~i~~v~Q~   78 (212)
                      +...+  +++++++.+| +++|+||||||||||+++|.+++.+ ..|.....+.  ++ .      .......+.+++|+
T Consensus        11 nf~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~   88 (182)
T 3kta_A           11 GFKSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGG-LSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNN   88 (182)
T ss_dssp             SBGGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTC-CCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEEC
T ss_pred             CeEeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcC-CcccccccccchheeecccccCCCCceEEEEEEEeC
Confidence            33456  7899999999 9999999999999999999998876 3443222111  11 0      00123457888887


Q ss_pred             CCCC--C---CCCHHHHHHHH-Hh-hhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHH
Q psy8250          79 DLTV--D---TLTVHEHMTLM-AR-LKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVA  141 (212)
Q Consensus        79 ~~~~--~---~ltv~e~l~~~-~~-~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~  141 (212)
                      +...  +   .+++...+.-. .. +..+ +  .......+.++++.+++.+..   +.-++.|+.+++.
T Consensus        89 ~~~~~~~~~~~~~i~r~~~~~~~~~~~i~-g--~~~~~~~~~~~l~~~~l~~~~---~~~~~qg~~~~l~  152 (182)
T 3kta_A           89 EDRGFPIDEDEVVIRRRVYPDGRSSYWLN-G--RRATRSEILDILTAAMISPDG---YNIVLQGDITKFI  152 (182)
T ss_dssp             TTCCSSSSSSEEEEEEEECTTSCEEEEET-T--EEECHHHHHHHHHHTTCCTTC---TTEECTTCTTHHH
T ss_pred             CCcccccCCcEEEEEEEEEeCCcEEEEEC-C--eEcCHHHHHHHHHHcCCCCCC---CEEEEcccHHHHH
Confidence            5321  1   12221111000 00 0000 0  011235677888889886531   2345666666553

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=99.01  E-value=4.9e-12  Score=113.38  Aligned_cols=151  Identities=11%  Similarity=0.013  Sum_probs=88.7

Q ss_pred             eeeEEEEcCCcEEEEECCCCccHHHHHHHHHc--CCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCC--CCCHHHH
Q psy8250          15 ESLSGIAESGSLLAIMGPSGAGKTTLLACISQ--RIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVD--TLTVHEH   90 (212)
Q Consensus        15 ~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g--~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~--~ltv~e~   90 (212)
                      +.+++++.++..+.|.|++||||||++++|..  +..+ ..|++.+.+.+.....+..   | ..-|.+..  .....+-
T Consensus       158 ~pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~-~p~~v~l~liDpK~~el~~---~-~~lPhl~~~Vvtd~~~a  232 (512)
T 2ius_A          158 EPVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKA-QPEDVRFIMIDPKMLELSV---Y-EGIPHLLTEVVTDMKDA  232 (512)
T ss_dssp             CEEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTC-CTTTEEEEEECCSSSGGGG---G-TTCTTBSSSCBCSHHHH
T ss_pred             CEEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhC-CCceEEEEEECCchhhhhh---h-ccCCcccceeecCHHHH
Confidence            35788999999999999999999999999875  3444 3566766555543211110   0 00011110  0112221


Q ss_pred             HHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccC---CCCCCCChHHHHHH----------HHHHHHhhCCC-eEEec
Q psy8250          91 MTLMARLKMDRNLHHVERARTVDALLKELGLLKCKN---SVLNVLSGGERKRV----------ALAVQTIIVQS-GFVPQ  156 (212)
Q Consensus        91 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~---~~~~~LSgGqrqRv----------~lA~al~~~p~-llilD  156 (212)
                      ......       ...+..++ .+++..+|+.+...   +....+|+||+|+.          .+|+++...|. ++++|
T Consensus       233 ~~~L~~-------~~~EmerR-~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvID  304 (512)
T 2ius_A          233 ANALRW-------CVNEMERR-YKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVD  304 (512)
T ss_dssp             HHHHHH-------HHHHHHHH-HHHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEE
T ss_pred             HHHHHH-------HHHHHHHH-HHHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEe
Confidence            111111       12344555 37788888865422   22345788887752          35566777887 89999


Q ss_pred             CCCC-CChhhHHHHHHHHHHHHhh
Q psy8250         157 HDLT-VDTLTVHEHMTLMARLKMD  179 (212)
Q Consensus       157 EPt~-lD~~~~~~~~~~l~~l~~~  179 (212)
                      |+.+ ++. ....+.++|.++.+.
T Consensus       305 E~~~ll~~-~~~~~~~~l~~Lar~  327 (512)
T 2ius_A          305 EFADLMMT-VGKKVEELIARLAQK  327 (512)
T ss_dssp             THHHHHHH-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHhh-hhHHHHHHHHHHHHH
Confidence            9999 763 345666777766543

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=99.00  E-value=1.5e-09  Score=91.04  Aligned_cols=103  Identities=17%  Similarity=0.078  Sum_probs=65.0

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHHHHHHhhhccc
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDR  101 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~  101 (212)
                      .+|++++++|||||||||+++.|++.+.+ .+|               +.+.++.+++.   ..+..+.+.....     
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~-~~G---------------~~V~lv~~D~~---r~~a~eqL~~~~~-----  158 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISML-EKH---------------KKIAFITTDTY---RIAAVEQLKTYAE-----  158 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHHH-TTC---------------CCEEEEECCCS---STTHHHHHHHHHT-----
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHH-hcC---------------CEEEEEecCcc---cchHHHHHHHHHH-----
Confidence            57999999999999999999999998876 467               12556666552   2345555543221     


Q ss_pred             CCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHH
Q psy8250         102 NLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMA  174 (212)
Q Consensus       102 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~  174 (212)
                                      ..|+.....     .+ +..-+.+++  .+.+|+++|+|  |+ +|+.....+.++.+
T Consensus       159 ----------------~~gl~~~~~-----~~-~~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~  206 (296)
T 2px0_A          159 ----------------LLQAPLEVC-----YT-KEEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKE  206 (296)
T ss_dssp             ----------------TTTCCCCBC-----SS-HHHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHH
T ss_pred             ----------------hcCCCeEec-----CC-HHHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHH
Confidence                            123321110     12 233355555  45999999999  66 77766555554443

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.95  E-value=4.4e-11  Score=97.96  Aligned_cols=56  Identities=20%  Similarity=0.234  Sum_probs=47.0

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHH---cCCCCCCceEEE--------ECCEeCCc----ccccceEEEEcCC
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACIS---QRIQGDVDGQIL--------LNGLEVEK----NLMVKVSGFVPQH   78 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~---g~~~p~~~G~I~--------~~g~~~~~----~~~~~~i~~v~Q~   78 (212)
                      .+|++++|+|||||||||++++|+   |+..+ ++|.|+        .+|.++..    ..+++.+++++|.
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~-d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   95 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLL-DSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVS   95 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEE-EHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcC-CCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEec
Confidence            789999999999999999999999   98888 699999        88887742    1345567888864

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=98.95  E-value=4.5e-13  Score=120.00  Aligned_cols=136  Identities=14%  Similarity=0.159  Sum_probs=87.2

Q ss_pred             cccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccc---ccceEEEEcCCCC
Q psy8250           4 FHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL---MVKVSGFVPQHDL   80 (212)
Q Consensus         4 l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~---~~~~i~~v~Q~~~   80 (212)
                      +...|.+..+++++++.+++|  +.|+||||+|||||+++|++...   .+.+.+++.++....   ..+.+..+||...
T Consensus        46 lv~~l~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~---~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~  120 (499)
T 2dhr_A           46 IVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDFVEMFVGVGAARVRDLFETAK  120 (499)
T ss_dssp             HHHHHHCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT---CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSS
T ss_pred             HHHHhhchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC---CCEEEEehhHHHHhhhhhHHHHHHHHHHHHH
Confidence            444555667888999999999  89999999999999999999763   678899887764321   1233556777653


Q ss_pred             -CCCCCCHHHHHHHHHhhhcc-cCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250          81 -TVDTLTVHEHMTLMARLKMD-RNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD  158 (212)
Q Consensus        81 -~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP  158 (212)
                       ..+...+.|++......... ......+....+..++.             .||||++|+..+++|...+|++  ||||
T Consensus       121 ~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~-------------~Ldg~~~~~~viviAatn~p~~--LD~a  185 (499)
T 2dhr_A          121 RHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV-------------EMDGFEKDTAIVVMAATNRPDI--LDPA  185 (499)
T ss_dssp             SSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH-------------HGGGCCSSCCCEEEECCSCGGG--SCTT
T ss_pred             hcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH-------------HhcccccCccEEEEEecCChhh--cCcc
Confidence             33444555555321111000 00012233333444443             3678888888888888888876  7876


Q ss_pred             C
Q psy8250         159 L  159 (212)
Q Consensus       159 t  159 (212)
                      .
T Consensus       186 L  186 (499)
T 2dhr_A          186 L  186 (499)
T ss_dssp             T
T ss_pred             c
Confidence            5

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.94  E-value=5.1e-11  Score=97.76  Aligned_cols=48  Identities=19%  Similarity=0.347  Sum_probs=36.3

Q ss_pred             Cccc-cccc-CCcceeeeeEEEEcC---CcEEEEECCCCccHHHHHHHHHcCC
Q psy8250           1 METF-HPLF-GDTNYKESLSGIAES---GSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus         1 ~~~l-~~~~-~~~~~l~~vs~~i~~---Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      ++++ ++.| ++..+|+++||+|.+   |++++|+|++||||||+.++|++.+
T Consensus        20 ~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l   72 (250)
T 3nwj_A           20 TGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL   72 (250)
T ss_dssp             ------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence            3578 9999 778899999999999   9999999999999999999999854

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.94  E-value=2.1e-10  Score=90.08  Aligned_cols=35  Identities=31%  Similarity=0.329  Sum_probs=29.3

Q ss_pred             EEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCce
Q psy8250          19 GIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDG   54 (212)
Q Consensus        19 ~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G   54 (212)
                      +++.+|++++|+|||||||||++++|++.+.| ..|
T Consensus         1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~-~~~   35 (207)
T 2j41_A            1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPST-SYK   35 (207)
T ss_dssp             ---CCCCEEEEECSTTSCHHHHHHHHHHCTTC-CEE
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCC-CeE
Confidence            46889999999999999999999999998866 455

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=98.93  E-value=1.8e-10  Score=101.99  Aligned_cols=150  Identities=12%  Similarity=0.041  Sum_probs=87.5

Q ss_pred             cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCce-EEEECCEeCCcccccce-EEEEcCCCCCCCCCCHH
Q psy8250          11 TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDG-QILLNGLEVEKNLMVKV-SGFVPQHDLTVDTLTVH   88 (212)
Q Consensus        11 ~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G-~I~~~g~~~~~~~~~~~-i~~v~Q~~~~~~~ltv~   88 (212)
                      ...|+++..-+.+|+++.|.|++|+|||||+..+++...+ ..| .|.+.+.+.+...+..+ .+....       ... 
T Consensus       190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~-~~g~~Vl~~s~E~s~~~l~~r~~~~~~~-------~~~-  260 (454)
T 2r6a_A          190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVAT-KTNENVAIFSLEMSAQQLVMRMLCAEGN-------INA-  260 (454)
T ss_dssp             CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHH-HSSCCEEEEESSSCHHHHHHHHHHHHHT-------CCH-
T ss_pred             cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH-hCCCcEEEEECCCCHHHHHHHHHHHHcC-------CCH-
Confidence            3467888877999999999999999999999999986654 234 34443333221111110 000000       000 


Q ss_pred             HHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHh--hCCCeEEecCCCC-CChh-
Q psy8250          89 EHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTI--IVQSGFVPQHDLT-VDTL-  164 (212)
Q Consensus        89 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~--~~p~llilDEPt~-lD~~-  164 (212)
                      +.      +.. ..+. .+...++.++++.++..+..-.....+|.++.+  ..+++++  .+|+++++|+++. .+.. 
T Consensus       261 ~~------l~~-g~l~-~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~  330 (454)
T 2r6a_A          261 QN------LRT-GKLT-PEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGR  330 (454)
T ss_dssp             HH------HHT-SCCC-HHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC
T ss_pred             HH------Hhc-CCCC-HHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCC
Confidence            00      000 0122 223345556666665444333335679999887  5667776  6799999999999 5321 


Q ss_pred             -------hHHHHHHHHHHHHhh
Q psy8250         165 -------TVHEHMTLMARLKMD  179 (212)
Q Consensus       165 -------~~~~~~~~l~~l~~~  179 (212)
                             ...++...|+.++++
T Consensus       331 ~~~~~~~~i~~i~~~Lk~lAke  352 (454)
T 2r6a_A          331 SKENRQQEVSEISRSLKALARE  352 (454)
T ss_dssp             ----CHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHH
Confidence                   224556666766655

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.90  E-value=5.2e-11  Score=93.87  Aligned_cols=61  Identities=21%  Similarity=0.337  Sum_probs=47.0

Q ss_pred             cccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEE--EECCEeCC
Q psy8250           2 ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQI--LLNGLEVE   64 (212)
Q Consensus         2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I--~~~g~~~~   64 (212)
                      ++++..++.....+..++..++|++++|+|||||||||+.++|++.+.  ..|.+  +++|.++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~--~~G~~~~~~d~d~~~   65 (200)
T 3uie_A            3 TNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY--QKGKLCYILDGDNVR   65 (200)
T ss_dssp             -------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEHHHHT
T ss_pred             CCCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCceEEEecCchhh
Confidence            467777788888888888889999999999999999999999999875  36877  88876653

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.86  E-value=3.9e-10  Score=95.61  Aligned_cols=80  Identities=15%  Similarity=0.145  Sum_probs=61.9

Q ss_pred             eeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-------cc-----cceEEEE-cCCCC
Q psy8250          14 KESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-------LM-----VKVSGFV-PQHDL   80 (212)
Q Consensus        14 l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-------~~-----~~~i~~v-~Q~~~   80 (212)
                      +++++|.+++|++++|+||||+||||++..|++.+.+ ..|+|.+.+.++...       .+     +..+.++ +|...
T Consensus        95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~-~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~  173 (320)
T 1zu4_A           95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAE-LGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLN  173 (320)
T ss_dssp             -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTT
T ss_pred             ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCC
Confidence            3689999999999999999999999999999999887 589999987776421       12     4468888 77655


Q ss_pred             CCCCCCHHHHHHHH
Q psy8250          81 TVDTLTVHEHMTLM   94 (212)
Q Consensus        81 ~~~~ltv~e~l~~~   94 (212)
                      ..+..++++++...
T Consensus       174 ~~p~~~~~~~l~~~  187 (320)
T 1zu4_A          174 ADPASVVFDAIKKA  187 (320)
T ss_dssp             CCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
Confidence            55555666776654

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=98.85  E-value=1.6e-09  Score=92.82  Aligned_cols=30  Identities=30%  Similarity=0.417  Sum_probs=25.9

Q ss_pred             EEcCCcEEEEECCCCccHHHHHHHHHcCCC
Q psy8250          20 IAESGSLLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        20 ~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      -+++|+++.|.||||||||||+..++....
T Consensus        57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~   86 (349)
T 2zr9_A           57 GLPRGRVIEIYGPESSGKTTVALHAVANAQ   86 (349)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            478999999999999999999888876443

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.71  E-value=4.2e-09  Score=81.56  Aligned_cols=37  Identities=14%  Similarity=0.228  Sum_probs=29.9

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEE
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILL   58 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~   58 (212)
                      .+|++++|+||||||||||+++|++.+++...|.|..
T Consensus         3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~   39 (180)
T 1kgd_A            3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH   39 (180)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence            3689999999999999999999999875323555544

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.71  E-value=7.7e-10  Score=93.81  Aligned_cols=46  Identities=11%  Similarity=0.099  Sum_probs=40.9

Q ss_pred             cccccCCcceeeeeEEEEcCCc------EEEEECCCCccHHHHHHHHHcCCC
Q psy8250           4 FHPLFGDTNYKESLSGIAESGS------LLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus         4 l~~~~~~~~~l~~vs~~i~~Ge------~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      ++..|++...+++++..+..++      ++||+||||||||||+++|++++.
T Consensus        66 l~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~  117 (321)
T 3tqc_A           66 LSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS  117 (321)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             HHHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            5667788888899998888877      999999999999999999999876

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.69  E-value=7.8e-09  Score=81.22  Aligned_cols=39  Identities=26%  Similarity=0.203  Sum_probs=24.7

Q ss_pred             CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        10 ~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      ...+++||||++.+|++++|+||+||||||+.+.|+..+
T Consensus        11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            345899999999999999999999999999999999755

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=98.67  E-value=2.4e-07  Score=74.14  Aligned_cols=47  Identities=15%  Similarity=0.159  Sum_probs=32.3

Q ss_pred             eeeee-EEEEcCCcEEEEECCCCccHHHHHHHH-HcCCCCCCceEEEECC
Q psy8250          13 YKESL-SGIAESGSLLAIMGPSGAGKTTLLACI-SQRIQGDVDGQILLNG   60 (212)
Q Consensus        13 ~l~~v-s~~i~~Ge~~~iiGpnGaGKSTLl~~i-~g~~~p~~~G~I~~~g   60 (212)
                      .|+.+ ..-+++|++++|.||||||||||+..+ .+.... ..+.++++.
T Consensus        11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~-~~~v~~~~~   59 (247)
T 2dr3_A           11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKM-GEPGIYVAL   59 (247)
T ss_dssp             THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHT-TCCEEEEES
T ss_pred             hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEc
Confidence            45555 556899999999999999999996554 443333 234444443

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=98.65  E-value=8.9e-09  Score=91.65  Aligned_cols=38  Identities=24%  Similarity=0.448  Sum_probs=30.2

Q ss_pred             CCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250           9 GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus         9 ~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .+...++++++.+++|  +.|+||+|+|||||+++|++..
T Consensus        36 ~~~~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~   73 (476)
T 2ce7_A           36 KDPSKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEA   73 (476)
T ss_dssp             HCTHHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHH
T ss_pred             hChHHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHc
Confidence            3334566677777777  7899999999999999999843

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=98.63  E-value=2.3e-07  Score=79.37  Aligned_cols=57  Identities=19%  Similarity=0.315  Sum_probs=40.7

Q ss_pred             CcccccccCC---cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcC--CCCCCceEEEECCE
Q psy8250           1 METFHPLFGD---TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQR--IQGDVDGQILLNGL   61 (212)
Q Consensus         1 ~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~--~~p~~~G~I~~~g~   61 (212)
                      |+++.+.|+.   ..+|++++++++   .++|+|++|||||||++.|+|.  +++ .+|.++....
T Consensus        11 l~~~~~~~~~~~~~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~-~~~~vT~~p~   72 (360)
T 3t34_A           11 IQRACTALGDHGDSSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPR-GSGIVTRRPL   72 (360)
T ss_dssp             TTTTTTSCSSCCSSCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCC-CSSSCCCSCE
T ss_pred             HHHHHHhhCccccccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCC-CCCcccCcce
Confidence            4677777764   358999999998   8999999999999999999994  444 4666554443

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.60  E-value=1.1e-08  Score=82.31  Aligned_cols=41  Identities=27%  Similarity=0.225  Sum_probs=35.0

Q ss_pred             EEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeC
Q psy8250          18 SGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV   63 (212)
Q Consensus        18 s~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~   63 (212)
                      +.+.++|++++|.|+||||||||+++|++.     .|+|.+.+.+.
T Consensus        14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~-----~g~v~~~~~~~   54 (230)
T 2vp4_A           14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY-----KNDICLLTEPV   54 (230)
T ss_dssp             BTTTCCCEEEEEECSTTSCHHHHHHTTGGG-----TTTEEEECCTH
T ss_pred             cCCCCCceEEEEECCCCCCHHHHHHHHHhc-----cCCeEEEecCH
Confidence            344588999999999999999999999985     57788887764

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.55  E-value=4.2e-08  Score=77.65  Aligned_cols=29  Identities=34%  Similarity=0.577  Sum_probs=27.0

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcCCCC
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQRIQG   50 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p   50 (212)
                      ++|++++|+||||||||||++.|++.+.+
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~   34 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPET   34 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence            68999999999999999999999998765

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.55  E-value=1e-08  Score=80.83  Aligned_cols=42  Identities=26%  Similarity=0.268  Sum_probs=36.0

Q ss_pred             EcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeC
Q psy8250          21 AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV   63 (212)
Q Consensus        21 i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~   63 (212)
                      ..+|++++|+|+||||||||+++|++.+.+ ..|.|.+.+.+.
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~-~~~~v~~~~~d~   60 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQTLRE-QGISVCVFHMDD   60 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHHH-TTCCEEEEEGGG
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHHhh-cCCeEEEeccCc
Confidence            578999999999999999999999998877 578887765543

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=98.54  E-value=7.3e-08  Score=82.18  Aligned_cols=120  Identities=13%  Similarity=0.127  Sum_probs=75.8

Q ss_pred             ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHH
Q psy8250          12 NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHM   91 (212)
Q Consensus        12 ~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l   91 (212)
                      ..|+.+..-+.+|+++.|.|++|+|||||+..++..... ..+.                +.|+.      .+++..+..
T Consensus        34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~-~g~~----------------Vl~fS------lEms~~ql~   90 (338)
T 4a1f_A           34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN-DDRG----------------VAVFS------LEMSAEQLA   90 (338)
T ss_dssp             HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH-TTCE----------------EEEEE------SSSCHHHHH
T ss_pred             hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cCCe----------------EEEEe------CCCCHHHHH
Confidence            456666666899999999999999999999888764321 1112                23332      123443322


Q ss_pred             HHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCCCChhhHHHHHH
Q psy8250          92 TLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHMT  171 (212)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~lD~~~~~~~~~  171 (212)
                      .                  ++......+.+....+   +.||.++.+|+..|...+.+++++|.|+|.. +   ..++..
T Consensus        91 ~------------------Rlls~~~~v~~~~l~~---g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~-s---i~~i~~  145 (338)
T 4a1f_A           91 L------------------RALSDLTSINMHDLES---GRLDDDQWENLAKCFDHLSQKKLFFYDKSYV-R---IEQIRL  145 (338)
T ss_dssp             H------------------HHHHHHHCCCHHHHHH---TCCCHHHHHHHHHHHHHHHHSCEEEECCTTC-C---HHHHHH
T ss_pred             H------------------HHHHHhhCCCHHHHhc---CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCC-c---HHHHHH
Confidence            1                  1111111122222211   4799999999999999999999999999865 1   225555


Q ss_pred             HHHHHHhh
Q psy8250         172 LMARLKMD  179 (212)
Q Consensus       172 ~l~~l~~~  179 (212)
                      .+++++.+
T Consensus       146 ~ir~l~~~  153 (338)
T 4a1f_A          146 QLRKLKSQ  153 (338)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            56666544

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.54  E-value=3e-08  Score=78.40  Aligned_cols=32  Identities=16%  Similarity=0.308  Sum_probs=26.7

Q ss_pred             EEEEcCCcEEEEECCCCccHHHHHHHHHcCCC
Q psy8250          18 SGIAESGSLLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        18 s~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      |+...+|++++|+||||||||||++.|++.++
T Consensus        13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            34456899999999999999999999998764

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.53  E-value=3.1e-09  Score=90.66  Aligned_cols=59  Identities=15%  Similarity=0.169  Sum_probs=48.2

Q ss_pred             ccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEe
Q psy8250           3 TFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLE   62 (212)
Q Consensus         3 ~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~   62 (212)
                      +..+.|+...+++++++.+.+|.+++|+|++|||||||++.|++.+.+ ..|++.+-+.+
T Consensus        35 ~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~-~~~~v~v~~~d   93 (341)
T 2p67_A           35 HPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIR-EGLKVAVIAVD   93 (341)
T ss_dssp             CHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHH-TTCCEEEEEEC
T ss_pred             CchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHh-cCCeEEEEeec
Confidence            445567777789999999999999999999999999999999988765 46666554443

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.49  E-value=3.3e-08  Score=75.69  Aligned_cols=37  Identities=22%  Similarity=0.457  Sum_probs=31.5

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeC
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV   63 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~   63 (212)
                      .+|++++|+|||||||||++++|++.+     |.+++++.++
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-----g~~~i~~d~~   42 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQL-----HAAFLDGDFL   42 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH-----TCEEEEGGGG
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhh-----CcEEEeCccc
Confidence            569999999999999999999999853     6677877655

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.47  E-value=3.2e-08  Score=89.56  Aligned_cols=43  Identities=33%  Similarity=0.460  Sum_probs=37.4

Q ss_pred             EEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCce-EEE-ECCEeC
Q psy8250          20 IAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDG-QIL-LNGLEV   63 (212)
Q Consensus        20 ~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G-~I~-~~g~~~   63 (212)
                      .+.+|++++|+|+||||||||+++|++.+.| .+| +|. ++|.++
T Consensus       365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~-~~G~~i~~lDgD~~  409 (552)
T 3cr8_A          365 RERQGFTVFFTGLSGAGKSTLARALAARLME-MGGRCVTLLDGDIV  409 (552)
T ss_dssp             GGGSCEEEEEEESSCHHHHHHHHHHHHHHHT-TCSSCEEEESSHHH
T ss_pred             ccccceEEEEECCCCChHHHHHHHHHHhhcc-cCCceEEEECCcHH
Confidence            4789999999999999999999999999988 465 674 888654

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=98.46  E-value=1e-08  Score=92.69  Aligned_cols=58  Identities=24%  Similarity=0.347  Sum_probs=47.3

Q ss_pred             ccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEe
Q psy8250           3 TFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLE   62 (212)
Q Consensus         3 ~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~   62 (212)
                      ++.+.|+...++.++++++ +|++++|+||||+|||||+++|++.+.+ ..|.|.+.|..
T Consensus        88 ~vk~~i~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~-~~~~i~~~~~~  145 (543)
T 3m6a_A           88 KVKERILEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGR-KFVRISLGGVR  145 (543)
T ss_dssp             HHHHHHHHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTC-EEEEECCCC--
T ss_pred             HHHHHHHHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCC-CeEEEEecccc
Confidence            4455566666788888888 8999999999999999999999999877 58888887743

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=98.42  E-value=1.5e-07  Score=88.42  Aligned_cols=63  Identities=13%  Similarity=0.123  Sum_probs=45.2

Q ss_pred             CCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC--CChhhHHHHHHHHHHHHhhc------CcchHHHH
Q psy8250         126 NSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT--VDTLTVHEHMTLMARLKMDR------NLHHVERA  188 (212)
Q Consensus       126 ~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~--lD~~~~~~~~~~l~~l~~~~------~~h~~~~~  188 (212)
                      +..+.-+|.|+.+|..++++++.+++++|+|||..  +|......++..+.......      .||+.+..
T Consensus       185 ~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l  255 (773)
T 2xau_A          185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKF  255 (773)
T ss_dssp             TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHH
T ss_pred             CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHH
Confidence            34456789999999999999999999999999995  67666555555444433221      26765544

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=98.39  E-value=1.2e-07  Score=81.12  Aligned_cols=111  Identities=10%  Similarity=0.001  Sum_probs=67.7

Q ss_pred             CCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccC
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRN  102 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~  102 (212)
                      ..-.++++|++|+|||||++.++|.. + ..|     +.+....  ...++.+.+...               .+.    
T Consensus       166 ~~~~v~lvG~~gvGKSTLin~L~~~~-~-~~~-----~~~~~t~--~~~~~~~~~~~~---------------~~~----  217 (357)
T 2e87_A          166 EIPTVVIAGHPNVGKSTLLKALTTAK-P-EIA-----SYPFTTR--GINVGQFEDGYF---------------RYQ----  217 (357)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHCSSC-C-EEE-----CCTTCSS--CEEEEEEEETTE---------------EEE----
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC-C-ccC-----CCCCeee--ceeEEEEEecCc---------------eEE----
Confidence            45579999999999999999999854 2 111     1111111  112333332210               000    


Q ss_pred             CCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec-CCCC-CChhhHHHHHHHHHHHH
Q psy8250         103 LHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ-HDLT-VDTLTVHEHMTLMARLK  177 (212)
Q Consensus       103 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD-EPt~-lD~~~~~~~~~~l~~l~  177 (212)
                                     .++.....+..+..+|++++|++. +.+...++-++++| +|.. +|......+++.+....
T Consensus       218 ---------------l~Dt~G~~~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~  278 (357)
T 2e87_A          218 ---------------IIDTPGLLDRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF  278 (357)
T ss_dssp             ---------------EEECTTTSSSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT
T ss_pred             ---------------EEeCCCccccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc
Confidence                           001111223456678999998876 55555677889999 9888 88888877777666543

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=98.37  E-value=2.2e-07  Score=69.96  Aligned_cols=32  Identities=28%  Similarity=0.420  Sum_probs=26.1

Q ss_pred             eeeeEEEEcCCcEEEEECCCCccHHHHHHHHHc
Q psy8250          14 KESLSGIAESGSLLAIMGPSGAGKTTLLACISQ   46 (212)
Q Consensus        14 l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g   46 (212)
                      +++.++++.+| +.+|+|||||||||++.+|.-
T Consensus        14 ~~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~   45 (149)
T 1f2t_A           14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAILV   45 (149)
T ss_dssp             BSSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred             CcceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence            34556666665 899999999999999999873

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=98.35  E-value=1.6e-08  Score=80.41  Aligned_cols=56  Identities=23%  Similarity=0.280  Sum_probs=41.4

Q ss_pred             CCcEEEEECCCCccHHHHHHHHHcCC---CCCCceEEEE--------CCEeCCc----ccccceEEEEcCCC
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACISQRI---QGDVDGQILL--------NGLEVEK----NLMVKVSGFVPQHD   79 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~---~p~~~G~I~~--------~g~~~~~----~~~~~~i~~v~Q~~   79 (212)
                      .+.+++|+|||||||||+.++|++.+   .+ ++|.+..        +|.++..    ..+.+.+++++|++
T Consensus         4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~-d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   74 (227)
T 1cke_A            4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLL-DSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST   74 (227)
T ss_dssp             CSCEEEEECCTTSSHHHHHHHHHHHHTCEEE-EHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCcc-cCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence            35689999999999999999999865   45 5888876        6666542    12345577777753

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.34  E-value=1.8e-07  Score=71.19  Aligned_cols=27  Identities=30%  Similarity=0.537  Sum_probs=24.4

Q ss_pred             CCcEEEEECCCCccHHHHHHHHHcCCC
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      .|++++|+|||||||||++++|++.+.
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l~   29 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQLN   29 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            467899999999999999999999764

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=98.33  E-value=7.4e-08  Score=82.69  Aligned_cols=71  Identities=18%  Similarity=0.181  Sum_probs=49.3

Q ss_pred             EEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEE-EECCEeCCcccccceEEEEcCCCCCCCCCCHHHHH
Q psy8250          20 IAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQI-LLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHM   91 (212)
Q Consensus        20 ~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I-~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l   91 (212)
                      =+++|+++.|.||+|||||||+..++....+ ..|.+ ++++.......+.+.+++.+|+..+....++.+.+
T Consensus        57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~-~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l  128 (356)
T 3hr8_A           57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQK-MGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQAL  128 (356)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHH
T ss_pred             CccCCcEEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHH
Confidence            3789999999999999999999999987765 46655 66665443333445567666665444444555443

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.28  E-value=3.9e-08  Score=84.55  Aligned_cols=51  Identities=18%  Similarity=0.130  Sum_probs=35.9

Q ss_pred             cccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEEC
Q psy8250           2 ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLN   59 (212)
Q Consensus         2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~   59 (212)
                      .+++..|+.+.++++++|+|      +|+|+||+|||||++.|.+...+ ..+.+...
T Consensus        21 ~~l~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~-~~~~~~~~   71 (361)
T 2qag_A           21 ANLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY-PERVIPGA   71 (361)
T ss_dssp             CCHHHHHHTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred             ccchHHhCCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCC-CCCcccCC
Confidence            46677777778889999887      99999999999999999886544 34444333

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=98.28  E-value=1.3e-07  Score=83.08  Aligned_cols=57  Identities=21%  Similarity=0.247  Sum_probs=47.0

Q ss_pred             ccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCC
Q psy8250           3 TFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE   64 (212)
Q Consensus         3 ~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~   64 (212)
                      ++++.|+...  ++++|+  ++++++++|+|||||||++..|++.+.+ ..|+|.+.+.++.
T Consensus        81 ~L~~~~~~~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~-~g~~Vllvd~D~~  137 (425)
T 2ffh_A           81 ALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG-KGRRPLLVAADTQ  137 (425)
T ss_dssp             HHHHHTTSSC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHT-TTCCEEEEECCSS
T ss_pred             HHHHHhCCCc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEeecccc
Confidence            4566776554  678887  8999999999999999999999999987 5888888766653

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=98.25  E-value=1.7e-06  Score=73.63  Aligned_cols=28  Identities=21%  Similarity=0.316  Sum_probs=24.8

Q ss_pred             CCc--EEEEECCCCccHHHHHHHHHcCCCC
Q psy8250          23 SGS--LLAIMGPSGAGKTTLLACISQRIQG   50 (212)
Q Consensus        23 ~Ge--~~~iiGpnGaGKSTLl~~i~g~~~p   50 (212)
                      .+.  .+.|.||+|+|||||++.+++...+
T Consensus        41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~   70 (389)
T 1fnn_A           41 GHHYPRATLLGRPGTGKTVTLRKLWELYKD   70 (389)
T ss_dssp             TSSCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHHhh
Confidence            456  8999999999999999999987765

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=98.25  E-value=1.3e-06  Score=76.72  Aligned_cols=146  Identities=13%  Similarity=0.130  Sum_probs=71.7

Q ss_pred             EEEEECCCCccHHHHHHHHHcCCC------------CCCceEEEECCEeCC---cccccceEEEEcCCCCCCCCCCHHHH
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRIQ------------GDVDGQILLNGLEVE---KNLMVKVSGFVPQHDLTVDTLTVHEH   90 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~~------------p~~~G~I~~~g~~~~---~~~~~~~i~~v~Q~~~~~~~ltv~e~   90 (212)
                      .++|+|+||+|||||++.|+|...            + ..|.+.++|.++.   ....++..++.+|....+..++..++
T Consensus       182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~-~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~  260 (439)
T 1mky_A          182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDP-VDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS  260 (439)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSTTEEECCCC-------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCc-eEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence            799999999999999999999753            3 4789999998652   22233333444455444544444455


Q ss_pred             HHHHHhh----hcccCCCHHHHHHHHHHHHHHcCCc-----cccCCCCC-CCChHHHHHHHHHHHHh--hCCCeEEecCC
Q psy8250          91 MTLMARL----KMDRNLHHVERARTVDALLKELGLL-----KCKNSVLN-VLSGGERKRVALAVQTI--IVQSGFVPQHD  158 (212)
Q Consensus        91 l~~~~~~----~~~~~~~~~~~~~~~~~~l~~~gl~-----~~~~~~~~-~LSgGqrqRv~lA~al~--~~p~llilDEP  158 (212)
                      +......    ........  ....+.+.+...+..     ...|..-. .-+.-+- .-.+++.+.  ...+++    +
T Consensus       261 i~~ad~vllv~d~~~~~~~--~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~  333 (439)
T 1mky_A          261 IEKADVVVIVLDATQGITR--QDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEF-TKLFREKLYFIDYSPLI----F  333 (439)
T ss_dssp             HHHCSEEEEEEETTTCCCH--HHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHH-HHHHHHHCGGGTTSCEE----E
T ss_pred             HhhCCEEEEEEeCCCCCCH--HHHHHHHHHHHcCCCEEEEEECccCCCchhhHHHHH-HHHHHHHhccCCCCcEE----E
Confidence            4432110    00011122  223455566665543     11221110 1111111 113334333  233443    3


Q ss_pred             CC-CChhhHHHHHHHHHHHHhh
Q psy8250         159 LT-VDTLTVHEHMTLMARLKMD  179 (212)
Q Consensus       159 t~-lD~~~~~~~~~~l~~l~~~  179 (212)
                      +| ..-....++++.+.+...+
T Consensus       334 ~SA~~g~gv~~l~~~i~~~~~~  355 (439)
T 1mky_A          334 TSADKGWNIDRMIDAMNLAYAS  355 (439)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHHHh
Confidence            77 8888888888877665443

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=98.21  E-value=5.1e-07  Score=70.94  Aligned_cols=30  Identities=23%  Similarity=0.365  Sum_probs=27.1

Q ss_pred             EEEcCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          19 GIAESGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        19 ~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      =++++|.+++|+|++||||||+.+.|++.+
T Consensus        16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             CCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             ccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            347889999999999999999999999865

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.19  E-value=3.5e-07  Score=78.26  Aligned_cols=41  Identities=17%  Similarity=0.346  Sum_probs=33.6

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeC
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV   63 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~   63 (212)
                      .++.+++|+|++|||||||++.|+|.+.+ ..|+|.+.+.+.
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~-~~~~v~V~~~dp  112 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTE-RGHKLSVLAVDP  112 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEECCC
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhhh-cCCeEEEEeecC
Confidence            35789999999999999999999998776 477777665543

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.17  E-value=1.2e-07  Score=79.42  Aligned_cols=57  Identities=23%  Similarity=0.278  Sum_probs=45.0

Q ss_pred             ccccccCCcceeee-eEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeC
Q psy8250           3 TFHPLFGDTNYKES-LSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV   63 (212)
Q Consensus         3 ~l~~~~~~~~~l~~-vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~   63 (212)
                      ++.+.|++..  ++ ++++.+ |++++++|+||+||||++..|++.+.+ ..++|.+.+.+.
T Consensus        79 ~l~~~~~~~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~-~g~~v~l~~~D~  136 (297)
T 1j8m_F           79 ELSNLFGGDK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKK-KGFKVGLVGADV  136 (297)
T ss_dssp             HHHHHTTCSC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHH-TTCCEEEEECCC
T ss_pred             HHHHHhcccc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEecCC
Confidence            4556676543  56 888876 999999999999999999999998876 477887765554

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.17  E-value=5.1e-06  Score=73.01  Aligned_cols=37  Identities=19%  Similarity=0.189  Sum_probs=31.1

Q ss_pred             CCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECC
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG   60 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g   60 (212)
                      ++.+++++|||||||||++..|+..+.+ ..++|.+-+
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~-~G~kVllv~  132 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK-RGYKVGLVA  132 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEEe
Confidence            5889999999999999999999998876 466666543

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=98.15  E-value=4.6e-07  Score=69.58  Aligned_cols=40  Identities=30%  Similarity=0.426  Sum_probs=31.6

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcCCCCCCce--EEEECCEeC
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDG--QILLNGLEV   63 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G--~I~~~g~~~   63 (212)
                      .+|++++|+|++||||||+.+.|++.+.+  .|  .+.+++..+
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~--~g~~~i~~d~~~~   44 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC--HGIPCYTLDGDNI   44 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhh--CCCcEEEECChHH
Confidence            47899999999999999999999997643  35  566665544

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=98.14  E-value=3.2e-06  Score=71.13  Aligned_cols=121  Identities=10%  Similarity=0.057  Sum_probs=72.5

Q ss_pred             cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHH
Q psy8250          11 TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEH   90 (212)
Q Consensus        11 ~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~   90 (212)
                      ...|+.+..-+.+|+++.|.|++|+|||||+..++.....  .|      .         .+.|+.-      +++..+.
T Consensus        55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~--~g------~---------~vl~~sl------E~s~~~l  111 (315)
T 3bh0_A           55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD--ND------D---------VVNLHSL------EMGKKEN  111 (315)
T ss_dssp             CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT--TT------C---------EEEEEES------SSCHHHH
T ss_pred             hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH--cC------C---------eEEEEEC------CCCHHHH
Confidence            3456666666899999999999999999999888743221  22      1         1344422      2343332


Q ss_pred             HHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCCCChhhHHHHH
Q psy8250          91 MTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHM  170 (212)
Q Consensus        91 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~lD~~~~~~~~  170 (212)
                      ..                  ++......+.+....+.. ..||.++++|+..|...+.++++++.|+|.. +   ..++.
T Consensus       112 ~~------------------R~~~~~~~i~~~~l~~~~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~-~---~~~i~  168 (315)
T 3bh0_A          112 IK------------------RLIVTAGSINAQKIKAAR-RDFASEDWGKLSMAIGEISNSNINIFDKAGQ-S---VNYIW  168 (315)
T ss_dssp             HH------------------HHHHHHTTCCHHHHHSCH-HHHCSSCHHHHHHHHHHHHTSCEEEECCSCC-B---HHHHH
T ss_pred             HH------------------HHHHHHcCCCHHHHhcCC-CCCCHHHHHHHHHHHHHHhCCCEEEECCCCC-C---HHHHH
Confidence            21                  111111111222222111 2389999999999999999999999999864 1   23344


Q ss_pred             HHHHHHH
Q psy8250         171 TLMARLK  177 (212)
Q Consensus       171 ~~l~~l~  177 (212)
                      ..++++.
T Consensus       169 ~~i~~l~  175 (315)
T 3bh0_A          169 SKTRQTK  175 (315)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4445544

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=98.14  E-value=1.4e-06  Score=68.83  Aligned_cols=31  Identities=29%  Similarity=0.449  Sum_probs=25.4

Q ss_pred             eeeeEEEEcCCcEEEEECCCCccHHHHHHHHH
Q psy8250          14 KESLSGIAESGSLLAIMGPSGAGKTTLLACIS   45 (212)
Q Consensus        14 l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~   45 (212)
                      +.+.++++.+| +.+|+|||||||||++.+|.
T Consensus        14 ~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             BSSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred             ccceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence            34556666665 99999999999999999985

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.07  E-value=4.4e-07  Score=76.88  Aligned_cols=49  Identities=29%  Similarity=0.634  Sum_probs=43.1

Q ss_pred             cccccccCCcceeeeeEEEEcCCcE--EEEECCCCccHHHHHHHHHcCCCC
Q psy8250           2 ETFHPLFGDTNYKESLSGIAESGSL--LAIMGPSGAGKTTLLACISQRIQG   50 (212)
Q Consensus         2 ~~l~~~~~~~~~l~~vs~~i~~Ge~--~~iiGpnGaGKSTLl~~i~g~~~p   50 (212)
                      ++++..+|...+++.++..++.|++  +.+.||+|+||||+++++++.+.+
T Consensus        22 ~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~   72 (340)
T 1sxj_C           22 ETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG   72 (340)
T ss_dssp             SSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred             CcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence            3566677878899999999999998  999999999999999999998755

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=98.07  E-value=1.3e-06  Score=75.56  Aligned_cols=47  Identities=36%  Similarity=0.444  Sum_probs=41.5

Q ss_pred             cccccccCC-cceee--------------eeEEEEcCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250           2 ETFHPLFGD-TNYKE--------------SLSGIAESGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus         2 ~~l~~~~~~-~~~l~--------------~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      +++++.|.. +..++              |+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus       137 e~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i  198 (422)
T 3ice_A          137 ENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI  198 (422)
T ss_dssp             TTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred             ccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence            577888854 55788              899999999999999999999999999998864

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=98.07  E-value=1.4e-06  Score=70.16  Aligned_cols=44  Identities=20%  Similarity=0.369  Sum_probs=30.1

Q ss_pred             eeeeeEEEEc---CCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEE
Q psy8250          13 YKESLSGIAE---SGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILL   58 (212)
Q Consensus        13 ~l~~vs~~i~---~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~   58 (212)
                      -|.++|+.+.   +|.+++|.||+||||||+++.|+..+.+  .+.+..
T Consensus        12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~--~~~~~~   58 (229)
T 4eaq_A           12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK--DYDVIM   58 (229)
T ss_dssp             --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT--TSCEEE
T ss_pred             CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc--CCCcee
Confidence            4677888876   8999999999999999999999987753  345543

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=98.07  E-value=7.3e-07  Score=70.44  Aligned_cols=44  Identities=20%  Similarity=0.246  Sum_probs=36.6

Q ss_pred             EEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCce--EEEECCEeC
Q psy8250          19 GIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDG--QILLNGLEV   63 (212)
Q Consensus        19 ~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G--~I~~~g~~~   63 (212)
                      +.+.+|.+++|+|++||||||+.+.|++.+.| ..|  .+.+++..+
T Consensus        20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~-~~g~~~~~~~~d~~   65 (211)
T 1m7g_A           20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVR-DRRVHAYRLDGDNI   65 (211)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHH-HHCCCEEEECHHHH
T ss_pred             ccCCCCCEEEEECCCCCCHHHHHHHHHHHhcc-ccCCcEEEECChHH
Confidence            34678999999999999999999999998876 477  788876443

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=98.00  E-value=3.1e-06  Score=66.26  Aligned_cols=21  Identities=29%  Similarity=0.575  Sum_probs=20.2

Q ss_pred             EEEEECCCCccHHHHHHHHHc
Q psy8250          26 LLAIMGPSGAGKTTLLACISQ   46 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g   46 (212)
                      +++|+|||||||||+.++|++
T Consensus         4 ~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999998

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.99  E-value=6.8e-06  Score=62.48  Aligned_cols=27  Identities=33%  Similarity=0.533  Sum_probs=23.3

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .+|..++|+|++|+|||||++.+++..
T Consensus         2 ~~~~ki~ivG~~g~GKStLl~~l~~~~   28 (172)
T 2gj8_A            2 SHGMKVVIAGRPNAGKSSLLNALAGRE   28 (172)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            367889999999999999999999864

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.98  E-value=5.9e-06  Score=63.79  Aligned_cols=51  Identities=25%  Similarity=0.345  Sum_probs=28.6

Q ss_pred             ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCC----CCC---CceEEEECCEeC
Q psy8250          12 NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRI----QGD---VDGQILLNGLEV   63 (212)
Q Consensus        12 ~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~----~p~---~~G~I~~~g~~~   63 (212)
                      .+++++++..++. .++++|++|+|||||++.+.+-.    .|.   ..+.+.++|..+
T Consensus        12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~   69 (190)
T 1m2o_B           12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKF   69 (190)
T ss_dssp             ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEE
T ss_pred             HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEE
Confidence            4788999998877 67899999999999999999732    111   356777776443

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=97.95  E-value=8e-07  Score=82.17  Aligned_cols=45  Identities=22%  Similarity=0.340  Sum_probs=33.7

Q ss_pred             EEEEcCCcEEEEECCCCccHHHHHHHHHcCCCC-CCceEEEECCEeC
Q psy8250          18 SGIAESGSLLAIMGPSGAGKTTLLACISQRIQG-DVDGQILLNGLEV   63 (212)
Q Consensus        18 s~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p-~~~G~I~~~g~~~   63 (212)
                      |+.++++..++|+|+||+|||||++.|++...+ ...|+| .+|..+
T Consensus         3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~   48 (665)
T 2dy1_A            3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTT   48 (665)
T ss_dssp             ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCS
T ss_pred             CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCccc
Confidence            456789999999999999999999999975543 136777 566554

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.95  E-value=4.3e-06  Score=64.57  Aligned_cols=32  Identities=28%  Similarity=0.338  Sum_probs=26.4

Q ss_pred             eeEEEEcCCcEEEEECCCCccHHHHHHHHHcC
Q psy8250          16 SLSGIAESGSLLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        16 ~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      ++|+...+|.+++|+|++||||||+.+.|+..
T Consensus         2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            57888899999999999999999999999864

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.94  E-value=2.4e-05  Score=64.49  Aligned_cols=26  Identities=31%  Similarity=0.538  Sum_probs=23.3

Q ss_pred             CCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      ++..+.|.||+|+|||||.+++++..
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~   78 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATEC   78 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence            56789999999999999999999854

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=97.92  E-value=2.1e-06  Score=66.92  Aligned_cols=55  Identities=22%  Similarity=0.385  Sum_probs=38.2

Q ss_pred             ccCC-cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCC----CC---CCceEEEECCEe
Q psy8250           7 LFGD-TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRI----QG---DVDGQILLNGLE   62 (212)
Q Consensus         7 ~~~~-~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~----~p---~~~G~I~~~g~~   62 (212)
                      .|++ ..+++++|+..++.+ ++++|++|+|||||++.+.+-.    .|   ...+.+.++|..
T Consensus         8 ~~~~~~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~   70 (198)
T 1f6b_A            8 IYSGFSSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT   70 (198)
T ss_dssp             -----CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEE
T ss_pred             HHHHHHHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEE
Confidence            3444 358889998888875 7899999999999999998732    11   135677777644

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.92  E-value=4.8e-06  Score=65.29  Aligned_cols=28  Identities=32%  Similarity=0.471  Sum_probs=25.6

Q ss_pred             EcCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          21 AESGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        21 i~~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      ..+|.+++|+||||||||||.+.|+..+
T Consensus         9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A            9 MARIPPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            5689999999999999999999998765

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.90  E-value=3.8e-06  Score=64.76  Aligned_cols=39  Identities=28%  Similarity=0.492  Sum_probs=31.4

Q ss_pred             EcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEE-EECC
Q psy8250          21 AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQI-LLNG   60 (212)
Q Consensus        21 i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I-~~~g   60 (212)
                      ..+|.+++|+|++||||||+.+.|+..+.+ ..+.+ .+++
T Consensus        10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~-~~~~~~~~~~   49 (186)
T 2yvu_A           10 IEKGIVVWLTGLPGSGKTTIATRLADLLQK-EGYRVEVLDG   49 (186)
T ss_dssp             CSCCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEH
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHHHHHHHHh-cCCeEEEeeH
Confidence            467999999999999999999999987765 35555 4443

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.90  E-value=4.6e-06  Score=65.06  Aligned_cols=21  Identities=24%  Similarity=0.479  Sum_probs=20.2

Q ss_pred             EEEEECCCCccHHHHHHHHHc
Q psy8250          26 LLAIMGPSGAGKTTLLACISQ   46 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g   46 (212)
                      +++|+|+|||||||+.+.|++
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            689999999999999999998

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.86  E-value=2e-05  Score=59.25  Aligned_cols=23  Identities=22%  Similarity=0.494  Sum_probs=21.2

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|++|+|||||++.++|..
T Consensus         5 ~v~lvG~~gvGKStL~~~l~~~~   27 (165)
T 2wji_A            5 EIALIGNPNVGKSTIFNALTGEN   27 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999999864

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.83  E-value=1.4e-05  Score=61.03  Aligned_cols=22  Identities=23%  Similarity=0.558  Sum_probs=20.5

Q ss_pred             EEEEECCCCccHHHHHHHHHcC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      .++|+|++|+|||||++.+++.
T Consensus         9 ~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            9 EIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999984

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=97.83  E-value=9.5e-06  Score=69.69  Aligned_cols=33  Identities=24%  Similarity=0.447  Sum_probs=28.2

Q ss_pred             ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHH
Q psy8250          12 NYKESLSGIAESGSLLAIMGPSGAGKTTLLACIS   45 (212)
Q Consensus        12 ~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~   45 (212)
                      ..+++..+++.+| +.+|+|||||||||++.+|.
T Consensus        14 r~~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~   46 (371)
T 3auy_A           14 KSHVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF   46 (371)
T ss_dssp             TTEEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred             ccccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence            3457778888775 89999999999999999986

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=97.82  E-value=1.1e-05  Score=69.98  Aligned_cols=41  Identities=15%  Similarity=0.272  Sum_probs=33.1

Q ss_pred             EEcCCcEEEEECCCCccHHHHHHHHHcC-----------CCCCCceEEEECCE
Q psy8250          20 IAESGSLLAIMGPSGAGKTTLLACISQR-----------IQGDVDGQILLNGL   61 (212)
Q Consensus        20 ~i~~Ge~~~iiGpnGaGKSTLl~~i~g~-----------~~p~~~G~I~~~g~   61 (212)
                      .+..|..++|+|+||+|||||++.|+|.           ..| ..|.+.+.+.
T Consensus        18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p-~~g~v~v~~~   69 (396)
T 2ohf_A           18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDP-NESRVPVPDE   69 (396)
T ss_dssp             CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CC-SEEEEECCCH
T ss_pred             hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCc-eeEEEEECCc
Confidence            4678889999999999999999999997           445 4788877664

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=97.76  E-value=8.9e-06  Score=67.97  Aligned_cols=41  Identities=7%  Similarity=0.028  Sum_probs=31.0

Q ss_pred             CChHHHHHHHHHHHHh--hCCCeEEecCCCC-CChhh-HHHHHHHHHHHHhh
Q psy8250         132 LSGGERKRVALAVQTI--IVQSGFVPQHDLT-VDTLT-VHEHMTLMARLKMD  179 (212)
Q Consensus       132 LSgGqrqRv~lA~al~--~~p~llilDEPt~-lD~~~-~~~~~~~l~~l~~~  179 (212)
                      +|.|++   .+++++.  ..|.++++    + +|... ...+.+.+.++++.
T Consensus       101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~  145 (301)
T 1ega_A          101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQ  145 (301)
T ss_dssp             CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTT
T ss_pred             CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHh
Confidence            888886   4566666  67889988    7 88877 67777888887654

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.72  E-value=3.8e-06  Score=71.93  Aligned_cols=37  Identities=24%  Similarity=0.369  Sum_probs=32.9

Q ss_pred             ceeeeeEEEEcCCcE--EEEECCCCccHHHHHHHHHcCC
Q psy8250          12 NYKESLSGIAESGSL--LAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        12 ~~l~~vs~~i~~Ge~--~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .+++.+++.+++|++  ++|+||+||||||+.++|++.+
T Consensus        10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l   48 (359)
T 2ga8_A           10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII   48 (359)
T ss_dssp             HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence            467888888999998  9999999999999999998854

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.72  E-value=8.8e-06  Score=65.90  Aligned_cols=46  Identities=26%  Similarity=0.441  Sum_probs=31.3

Q ss_pred             eeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeC
Q psy8250          13 YKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV   63 (212)
Q Consensus        13 ~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~   63 (212)
                      .++++++.++.|  +.|.||+|+|||||+++|++....+   -+.+++.++
T Consensus        36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~---~~~i~~~~~   81 (257)
T 1lv7_A           36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP---FFTISGSDF   81 (257)
T ss_dssp             GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC---EEEECSCSS
T ss_pred             HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC---EEEEeHHHH
Confidence            345555555555  8899999999999999999876432   467776655

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.71  E-value=1.6e-05  Score=62.03  Aligned_cols=25  Identities=28%  Similarity=0.501  Sum_probs=22.3

Q ss_pred             CcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          24 GSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        24 Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      ..+++|+|++||||||+.+.|++.+
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~l   42 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEAC   42 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            5689999999999999999998754

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.71  E-value=1.5e-05  Score=61.56  Aligned_cols=38  Identities=34%  Similarity=0.340  Sum_probs=29.0

Q ss_pred             cEEEEECCCCccHHHHHHHHHcCCCCC--CceEEEECCEe
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQRIQGD--VDGQILLNGLE   62 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g~~~p~--~~G~I~~~g~~   62 (212)
                      .+++|+|++|||||||++.|.+.+.+.  ..|.|..++.+
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~   46 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD   46 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence            579999999999999999999875431  24777776543

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.70  E-value=1.8e-05  Score=60.54  Aligned_cols=25  Identities=36%  Similarity=0.662  Sum_probs=22.3

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHc
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQ   46 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g   46 (212)
                      .+|.+++|+|++||||||+.+.|+.
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999999999985

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=97.65  E-value=2.6e-05  Score=62.47  Aligned_cols=26  Identities=31%  Similarity=0.459  Sum_probs=23.7

Q ss_pred             EcCCcEEEEECCCCccHHHHHHHHHc
Q psy8250          21 AESGSLLAIMGPSGAGKTTLLACISQ   46 (212)
Q Consensus        21 i~~Ge~~~iiGpnGaGKSTLl~~i~g   46 (212)
                      -.+|.+++|+|++||||||+.+.|++
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            46789999999999999999999986

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.59  E-value=3.7e-05  Score=57.84  Aligned_cols=23  Identities=30%  Similarity=0.463  Sum_probs=20.8

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      +++|.|++||||||+.+.|+..+
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l   25 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKEL   25 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999998654

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.57  E-value=4.7e-05  Score=57.80  Aligned_cols=25  Identities=24%  Similarity=0.585  Sum_probs=22.7

Q ss_pred             CcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          24 GSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        24 Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      +.++.|.|++||||||+.+.|+..+
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l   27 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            5689999999999999999999765

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.56  E-value=2.9e-05  Score=63.01  Aligned_cols=41  Identities=24%  Similarity=0.365  Sum_probs=32.9

Q ss_pred             EEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeC
Q psy8250          20 IAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV   63 (212)
Q Consensus        20 ~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~   63 (212)
                      ....+.++.|+|++||||||+.+.|+..+.   .+.+.+++..+
T Consensus        28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~---~~~~~~~~D~~   68 (253)
T 2p5t_B           28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ---GNIVIIDGDSF   68 (253)
T ss_dssp             CCSSCEEEEEESCGGGTTHHHHHHHHHHTT---TCCEEECGGGG
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHhcC---CCcEEEecHHH
Confidence            567789999999999999999999998653   34567776544

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.55  E-value=3.9e-05  Score=58.66  Aligned_cols=23  Identities=43%  Similarity=0.616  Sum_probs=20.5

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|++|+|||||++.+++..
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~~   26 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKTK   26 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            48999999999999999999864

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.51  E-value=5.9e-05  Score=57.65  Aligned_cols=25  Identities=20%  Similarity=0.351  Sum_probs=22.4

Q ss_pred             CcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          24 GSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        24 Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      |.+++|.|++||||||+.+.|+..+
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l   27 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNL   27 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            6789999999999999999998644

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.49  E-value=7.4e-05  Score=59.74  Aligned_cols=25  Identities=28%  Similarity=0.327  Sum_probs=22.6

Q ss_pred             EEEEECCCCccHHHHHHHHHcCCCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRIQG   50 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~~p   50 (212)
                      .++|+|++|+|||||++.|+|...+
T Consensus        31 ~i~lvG~~g~GKStlin~l~g~~~~   55 (239)
T 3lxx_A           31 RIVLVGKTGAGKSATGNSILGRKVF   55 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSCCS
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCcC
Confidence            5899999999999999999997654

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=97.48  E-value=3.3e-05  Score=66.55  Aligned_cols=36  Identities=19%  Similarity=0.230  Sum_probs=30.1

Q ss_pred             CCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEEC
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLN   59 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~   59 (212)
                      .+..++|+||+||||||+++.+++...+ ..+.|.+.
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~-~~~~~~~~   69 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLREYM-QGSRVIII   69 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHHT-TTCCEEEE
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHHHH-CCCEEEEE
Confidence            5678999999999999999999987766 46777664

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.46  E-value=6.8e-05  Score=59.07  Aligned_cols=24  Identities=25%  Similarity=0.455  Sum_probs=21.8

Q ss_pred             CCcEEEEECCCCccHHHHHHHHHc
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACISQ   46 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~g   46 (212)
                      .+-+++|.|++||||||+.+.|+.
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999999987

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.46  E-value=6.6e-05  Score=56.21  Aligned_cols=19  Identities=26%  Similarity=0.562  Sum_probs=18.2

Q ss_pred             EEEEECCCCccHHHHHHHH
Q psy8250          26 LLAIMGPSGAGKTTLLACI   44 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i   44 (212)
                      +++|.||+||||||+.+.|
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            6899999999999999999

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.46  E-value=6.2e-05  Score=58.67  Aligned_cols=23  Identities=43%  Similarity=0.651  Sum_probs=19.6

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .+.|+||||||||||++.|....
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            36899999999999999987543

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.45  E-value=6.7e-05  Score=60.55  Aligned_cols=23  Identities=26%  Similarity=0.612  Sum_probs=20.9

Q ss_pred             CcEEEEECCCCccHHHHHHHHHc
Q psy8250          24 GSLLAIMGPSGAGKTTLLACISQ   46 (212)
Q Consensus        24 Ge~~~iiGpnGaGKSTLl~~i~g   46 (212)
                      .-+++|.||+||||||+.+.|+.
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            44899999999999999999984

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.43  E-value=6.7e-05  Score=60.99  Aligned_cols=23  Identities=39%  Similarity=0.549  Sum_probs=20.8

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      +++|+||||||||||.+.|+..+
T Consensus         3 li~I~G~~GSGKSTla~~La~~~   25 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQET   25 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHhcC
Confidence            68999999999999999998744

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.43  E-value=6.4e-05  Score=57.65  Aligned_cols=26  Identities=27%  Similarity=0.489  Sum_probs=23.0

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcC
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      ..+.++.|.|++||||||+.+.|+..
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~   28 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATG   28 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            46778999999999999999999863

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.41  E-value=8.4e-05  Score=57.38  Aligned_cols=23  Identities=48%  Similarity=0.732  Sum_probs=20.8

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      +++|.|++||||||+.+.|+..+
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l   24 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKL   24 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHhc
Confidence            68999999999999999999744

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.39  E-value=2.4e-05  Score=61.14  Aligned_cols=25  Identities=44%  Similarity=0.627  Sum_probs=22.3

Q ss_pred             EEEEECCCCccHHHHHHHHHcCCCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRIQG   50 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~~p   50 (212)
                      +++|.|++||||||+++.|+..+.+
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~   26 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRA   26 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            6899999999999999999987653

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.38  E-value=8.1e-06  Score=67.62  Aligned_cols=50  Identities=18%  Similarity=0.397  Sum_probs=36.5

Q ss_pred             CCcceeeeeEEEEcCC-----------cEEEEECCCCccHHHHHHHHHcCCCCCCceE-EEEC
Q psy8250           9 GDTNYKESLSGIAESG-----------SLLAIMGPSGAGKTTLLACISQRIQGDVDGQ-ILLN   59 (212)
Q Consensus         9 ~~~~~l~~vs~~i~~G-----------e~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~-I~~~   59 (212)
                      |...+++.+...+..+           ..+.|.||+|+||||+.++|++.+.+ ..+. +.++
T Consensus        21 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~-~~~~~~~~~   82 (311)
T 4fcw_A           21 GQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD-TEEAMIRID   82 (311)
T ss_dssp             SCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHS-CGGGEEEEE
T ss_pred             CHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcC-CCcceEEee
Confidence            5555666666665554           58999999999999999999998765 3553 3444

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.37  E-value=0.00012  Score=56.68  Aligned_cols=26  Identities=35%  Similarity=0.456  Sum_probs=23.9

Q ss_pred             CCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      +|.+++|.|+.||||||+.+.|+..+
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999999765

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.37  E-value=8.2e-05  Score=56.53  Aligned_cols=23  Identities=26%  Similarity=0.535  Sum_probs=20.6

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+||+||||||+.+.|+..+
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l   28 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDL   28 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            58899999999999999998644

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.37  E-value=0.00011  Score=56.13  Aligned_cols=26  Identities=23%  Similarity=0.326  Sum_probs=22.1

Q ss_pred             CCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .+..+.|+||+||||||+.+.|+..+
T Consensus         4 ~~~~i~l~G~~GsGKst~a~~La~~l   29 (185)
T 3trf_A            4 NLTNIYLIGLMGAGKTSVGSQLAKLT   29 (185)
T ss_dssp             -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            36789999999999999999998643

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=97.37  E-value=0.00048  Score=60.40  Aligned_cols=36  Identities=31%  Similarity=0.336  Sum_probs=29.6

Q ss_pred             eeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          13 YKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        13 ~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .|+.+..-+.+|+++.|.|++|+|||||...++...
T Consensus       189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~  224 (444)
T 2q6t_A          189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA  224 (444)
T ss_dssp             HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            455555458999999999999999999998887644

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.35  E-value=9.9e-05  Score=56.26  Aligned_cols=25  Identities=28%  Similarity=0.290  Sum_probs=22.4

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHc
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQ   46 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g   46 (212)
                      ..+.++.|+|++||||||+.+.|+.
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence            4577899999999999999999984

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.34  E-value=0.00012  Score=55.38  Aligned_cols=22  Identities=23%  Similarity=0.385  Sum_probs=20.2

Q ss_pred             cEEEEECCCCccHHHHHHHHHc
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQ   46 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g   46 (212)
                      .++.|.|++||||||+.+.|+.
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            3689999999999999999986

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.32  E-value=0.00011  Score=60.86  Aligned_cols=37  Identities=30%  Similarity=0.469  Sum_probs=28.9

Q ss_pred             EcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECC
Q psy8250          21 AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG   60 (212)
Q Consensus        21 i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g   60 (212)
                      ...+.++.|.||+||||||+.+.|+..+.   .|.+.+++
T Consensus        30 ~~~~~livl~G~sGsGKSTla~~L~~~~~---~~~~~Is~   66 (287)
T 1gvn_B           30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDN   66 (287)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHHTT---TCCEEECT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEEec
Confidence            34578999999999999999999986442   35566765

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=97.31  E-value=0.00031  Score=53.72  Aligned_cols=36  Identities=22%  Similarity=0.384  Sum_probs=25.3

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC-----CCCCce----EEEECCEe
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI-----QGDVDG----QILLNGLE   62 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~-----~p~~~G----~I~~~g~~   62 (212)
                      .++|+|++|+|||||++.+.+-.     .| +.+    .+.++|..
T Consensus        22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~   66 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALVHRYLTGTYVQEESP-EGGRFKKEIVVDGQS   66 (184)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHSSCCCCCCT-TCEEEEEEEEETTEE
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCcCC-CcceEEEEEEECCEE
Confidence            48999999999999997665532     33 345    55555544

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.31  E-value=0.00014  Score=56.48  Aligned_cols=27  Identities=30%  Similarity=0.533  Sum_probs=23.8

Q ss_pred             CCcEEEEECCCCccHHHHHHHHHcCCC
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      +|.+++|.|+.||||||+.+.|+..+.
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~   29 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIE   29 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            467899999999999999999987654

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=97.30  E-value=0.00021  Score=61.37  Aligned_cols=36  Identities=22%  Similarity=0.353  Sum_probs=28.6

Q ss_pred             CcEEEEECCCCccHHHHHHHHHcCC-----------CCCCceEEEECC
Q psy8250          24 GSLLAIMGPSGAGKTTLLACISQRI-----------QGDVDGQILLNG   60 (212)
Q Consensus        24 Ge~~~iiGpnGaGKSTLl~~i~g~~-----------~p~~~G~I~~~g   60 (212)
                      |-.++|+|.+|+|||||++.|++-.           .| ..|.+.+.+
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p-~~g~v~~~~   48 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEP-NTGVVPMPD   48 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCC-CSSEEECCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECc-eEEEEecCC
Confidence            3468999999999999999999832           34 467777765

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.29  E-value=0.00013  Score=56.36  Aligned_cols=24  Identities=29%  Similarity=0.476  Sum_probs=21.6

Q ss_pred             CcEEEEECCCCccHHHHHHHHHcC
Q psy8250          24 GSLLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        24 Ge~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      ..+++|+|++||||||+.+.|+..
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC
Confidence            457999999999999999999874

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.28  E-value=0.00014  Score=55.85  Aligned_cols=26  Identities=27%  Similarity=0.461  Sum_probs=23.2

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcC
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      .++.+++|.|+.||||||+.+.|+..
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~~   32 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQK   32 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            46789999999999999999999853

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=97.28  E-value=0.00012  Score=59.94  Aligned_cols=24  Identities=29%  Similarity=0.488  Sum_probs=21.6

Q ss_pred             EEEEECCCCccHHHHHHHHHcCCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      .++|+|++|||||||++.++|...
T Consensus         5 ~i~lvG~~g~GKTTL~n~l~g~~~   28 (271)
T 3k53_A            5 TVALVGNPNVGKTTIFNALTGLRQ   28 (271)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            589999999999999999999653

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.26  E-value=0.00015  Score=56.48  Aligned_cols=26  Identities=19%  Similarity=0.344  Sum_probs=23.4

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcC
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      ..|.+++|.|+.||||||+.+.|+..
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~~   33 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVEY   33 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            46889999999999999999999864

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.25  E-value=0.00016  Score=55.45  Aligned_cols=25  Identities=24%  Similarity=0.304  Sum_probs=22.1

Q ss_pred             cEEEEECCCCccHHHHHHHHHcCCC
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      .+++|+|++|||||||+..|...+.
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~   29 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAV   29 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhH
Confidence            3789999999999999999988654

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.24  E-value=0.00018  Score=55.02  Aligned_cols=23  Identities=35%  Similarity=0.449  Sum_probs=20.9

Q ss_pred             CcEEEEECCCCccHHHHHHHHHc
Q psy8250          24 GSLLAIMGPSGAGKTTLLACISQ   46 (212)
Q Consensus        24 Ge~~~iiGpnGaGKSTLl~~i~g   46 (212)
                      +.+++|.|++||||||+.+.|+.
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            56899999999999999999875

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.24  E-value=0.00016  Score=56.36  Aligned_cols=28  Identities=29%  Similarity=0.443  Sum_probs=24.1

Q ss_pred             EcCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          21 AESGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        21 i~~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      ..+|.+++|.|+.||||||+.+.|+..+
T Consensus         6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l   33 (215)
T 1nn5_A            6 ARRGALIVLEGVDRAGKSTQSRKLVEAL   33 (215)
T ss_dssp             -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            4578899999999999999999998643

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.19  E-value=0.00017  Score=54.98  Aligned_cols=23  Identities=30%  Similarity=0.518  Sum_probs=20.8

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      +++|.|++||||||+.+.|+..+
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l   25 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEIL   25 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999998754

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=97.19  E-value=0.0002  Score=55.55  Aligned_cols=23  Identities=26%  Similarity=0.595  Sum_probs=21.0

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      +++|.|++||||||+.+.|+..+
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~l   26 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAAL   26 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            79999999999999999998743

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=97.17  E-value=0.00016  Score=57.85  Aligned_cols=25  Identities=32%  Similarity=0.466  Sum_probs=22.1

Q ss_pred             EcCCcEEEEECCCCccHHHHHHHHH
Q psy8250          21 AESGSLLAIMGPSGAGKTTLLACIS   45 (212)
Q Consensus        21 i~~Ge~~~iiGpnGaGKSTLl~~i~   45 (212)
                      +.+|+.+++.||+||||||++..+.
T Consensus        73 i~~g~~~~i~g~TGsGKTt~~~~~~   97 (235)
T 3llm_A           73 ISQNSVVIIRGATGCGKTTQVPQFI   97 (235)
T ss_dssp             HHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred             HhcCCEEEEEeCCCCCcHHhHHHHH
Confidence            4679999999999999999888765

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=97.16  E-value=0.00022  Score=54.41  Aligned_cols=25  Identities=32%  Similarity=0.549  Sum_probs=22.1

Q ss_pred             cEEEEECCCCccHHHHHHHHHcCCC
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      -.++|+|++|+|||||++.+++...
T Consensus        49 ~~i~vvG~~g~GKSsll~~l~~~~~   73 (193)
T 2ged_A           49 PSIIIAGPQNSGKTSLLTLLTTDSV   73 (193)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3789999999999999999998653

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.16  E-value=0.00022  Score=59.29  Aligned_cols=40  Identities=30%  Similarity=0.392  Sum_probs=32.6

Q ss_pred             EEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEe
Q psy8250          20 IAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLE   62 (212)
Q Consensus        20 ~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~   62 (212)
                      .+.++..+.|.||+|+|||||.++|++...   .+-+.+++.+
T Consensus        45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~---~~~i~v~~~~   84 (301)
T 3cf0_A           45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISIKGPE   84 (301)
T ss_dssp             CCCCCSEEEEECSSSSSHHHHHHHHHHHTT---CEEEEECHHH
T ss_pred             CCCCCceEEEECCCCcCHHHHHHHHHHHhC---CCEEEEEhHH
Confidence            467889999999999999999999998653   4567777544

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=97.14  E-value=0.00025  Score=59.63  Aligned_cols=38  Identities=21%  Similarity=0.168  Sum_probs=32.1

Q ss_pred             cCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHc
Q psy8250           8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQ   46 (212)
Q Consensus         8 ~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g   46 (212)
                      +.....+++..+.+ .|.-++|.|+||+|||||...+.+
T Consensus       129 ~~~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~  166 (314)
T 1ko7_A          129 LARTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK  166 (314)
T ss_dssp             TCEEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             hccceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence            34456788888887 788999999999999999998876

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.12  E-value=0.00018  Score=54.61  Aligned_cols=26  Identities=31%  Similarity=0.546  Sum_probs=18.4

Q ss_pred             CCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      ++.++.|.|++||||||+.+.|+..+
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l   29 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERL   29 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            46789999999999999999998644

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.10  E-value=0.00033  Score=55.19  Aligned_cols=27  Identities=30%  Similarity=0.567  Sum_probs=22.8

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      ++|-+++|+|+.||||||+.+.|+..+
T Consensus         2 ~~~~~I~l~G~~GsGKsT~a~~La~~l   28 (220)
T 1aky_A            2 SESIRMVLIGPPGAGKGTQAPNLQERF   28 (220)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            356789999999999999999998643

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=97.09  E-value=0.00027  Score=54.34  Aligned_cols=27  Identities=22%  Similarity=0.394  Sum_probs=23.6

Q ss_pred             EcCCcEEEEECCCCccHHHHHHHHHcC
Q psy8250          21 AESGSLLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        21 i~~Ge~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      +..+.+++|.|+.||||||+.+.|+..
T Consensus         9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~   35 (199)
T 2bwj_A            9 LRKCKIIFIIGGPGSGKGTQCEKLVEK   35 (199)
T ss_dssp             HHHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            356779999999999999999999864

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=97.08  E-value=0.0003  Score=57.84  Aligned_cols=23  Identities=30%  Similarity=0.517  Sum_probs=21.2

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|++|+|||||++.++|..
T Consensus         5 kI~lvG~~nvGKSTL~n~L~g~~   27 (272)
T 3b1v_A            5 EIALIGNPNSGKTSLFNLITGHN   27 (272)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            58999999999999999999954

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=97.07  E-value=0.00031  Score=51.93  Aligned_cols=23  Identities=17%  Similarity=0.466  Sum_probs=20.4

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++++|+.|+|||||++.+.+..
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~~~   29 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCKGI   29 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            47899999999999999998753

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=97.07  E-value=0.00032  Score=52.35  Aligned_cols=23  Identities=26%  Similarity=0.528  Sum_probs=20.3

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|+.|+|||||++.+.+..
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~~~   28 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAGKQ   28 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC-
T ss_pred             EEEEECCCCccHHHHHHHHhcCC
Confidence            48999999999999999998854

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.07  E-value=0.00032  Score=54.93  Aligned_cols=22  Identities=36%  Similarity=0.505  Sum_probs=19.5

Q ss_pred             EEEEECCCCccHHHHHHHHHcC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      .++|.||.||||||+.+.|+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEK   23 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999753

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=97.05  E-value=0.00034  Score=53.43  Aligned_cols=23  Identities=35%  Similarity=0.476  Sum_probs=20.6

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      +++|.|+.||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l   24 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYL   24 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58999999999999999998644

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=97.05  E-value=0.00035  Score=51.35  Aligned_cols=23  Identities=22%  Similarity=0.447  Sum_probs=20.6

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++++|+.|+|||||++.+.+..
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998754

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=97.05  E-value=0.00032  Score=51.66  Aligned_cols=23  Identities=22%  Similarity=0.443  Sum_probs=20.2

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++++|+.|+|||||++.+.+-.
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~~~   27 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVTGT   27 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47999999999999999988643

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=97.05  E-value=0.00038  Score=51.59  Aligned_cols=22  Identities=27%  Similarity=0.552  Sum_probs=20.1

Q ss_pred             EEEEECCCCccHHHHHHHHHcC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      .++++|+.|+|||||++.+.+.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999874

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.04  E-value=0.00031  Score=55.65  Aligned_cols=27  Identities=30%  Similarity=0.374  Sum_probs=22.2

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++.+++|.|+.||||||+.+.|+..+
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~l   31 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTHF   31 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            456789999999999999999998533

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=97.03  E-value=0.00068  Score=53.40  Aligned_cols=37  Identities=24%  Similarity=0.207  Sum_probs=28.5

Q ss_pred             CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcC
Q psy8250          10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        10 ~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      ....+...-+.+ .|..+.|+||+|||||||...|+..
T Consensus        21 ~~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           21 ERRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             CCCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred             cceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            344566655554 5788999999999999999998753

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.03  E-value=0.00044  Score=53.62  Aligned_cols=27  Identities=30%  Similarity=0.532  Sum_probs=22.9

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      ..+-+++|+|+.||||||+.+.|+..+
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~~l   44 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAEKL   44 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            345689999999999999999998643

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=97.02  E-value=0.00034  Score=51.57  Aligned_cols=23  Identities=22%  Similarity=0.335  Sum_probs=20.4

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++++|+.|+|||||++.+.+..
T Consensus         6 ~i~v~G~~~~GKssl~~~l~~~~   28 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFMYDE   28 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            47899999999999999998753

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=97.02  E-value=0.00034  Score=51.79  Aligned_cols=23  Identities=17%  Similarity=0.466  Sum_probs=20.8

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++++|+.|+|||||++.+.+..
T Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            47899999999999999998865

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.02  E-value=0.00042  Score=53.71  Aligned_cols=25  Identities=28%  Similarity=0.401  Sum_probs=21.6

Q ss_pred             CCcEEEEECCCCccHHHHHHHHHcC
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      ...+++|.|+.||||||+.+.|+..
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~~   38 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVKD   38 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999999853

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=97.02  E-value=0.00041  Score=51.49  Aligned_cols=23  Identities=30%  Similarity=0.455  Sum_probs=19.8

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|+.|+|||||++.+++..
T Consensus         4 ki~ivG~~~~GKSsli~~l~~~~   26 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGGLQ   26 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCC-
T ss_pred             EEEEECCCCCCHHHHHHHHHhcc
Confidence            37899999999999999998644

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=97.01  E-value=0.00031  Score=52.80  Aligned_cols=23  Identities=22%  Similarity=0.365  Sum_probs=20.4

Q ss_pred             cEEEEECCCCccHHHHHHHHHcC
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      .+++|.|+.||||||+.+.|+..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~   25 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARA   25 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999863

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.01  E-value=0.00038  Score=54.52  Aligned_cols=23  Identities=39%  Similarity=0.459  Sum_probs=20.0

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+||.||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999997543

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=97.01  E-value=0.00042  Score=52.09  Aligned_cols=23  Identities=26%  Similarity=0.439  Sum_probs=21.0

Q ss_pred             cEEEEECCCCccHHHHHHHHHcC
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      ++++|.|+.||||||+.+.|+..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~   30 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLA   30 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999999999863

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=97.01  E-value=0.00025  Score=52.53  Aligned_cols=23  Identities=22%  Similarity=0.390  Sum_probs=20.1

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|+.|+|||||++.++|..
T Consensus         4 ki~~vG~~~~GKSsli~~l~~~~   26 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGGVE   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCC-
T ss_pred             EEEEECCCCCCHHHHHHHHcCcc
Confidence            47899999999999999998754

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=97.01  E-value=0.00027  Score=53.76  Aligned_cols=24  Identities=33%  Similarity=0.450  Sum_probs=21.2

Q ss_pred             cEEEEECCCCccHHHHHHHHHcCC
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      -.++|+|++|+|||||++.+.+..
T Consensus        17 ~ki~ivG~~~vGKSsL~~~l~~~~   40 (181)
T 1fzq_A           17 VRILLLGLDNAGKTTLLKQLASED   40 (181)
T ss_dssp             EEEEEEESTTSSHHHHHHHHCCSC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Confidence            358999999999999999998753

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.00  E-value=0.00041  Score=51.92  Aligned_cols=22  Identities=23%  Similarity=0.324  Sum_probs=19.9

Q ss_pred             EEEEECCCCccHHHHHHHHHcC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      +++|.|+.||||||+.+.|+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRS   23 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999863

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=97.00  E-value=0.00048  Score=51.54  Aligned_cols=25  Identities=40%  Similarity=0.570  Sum_probs=21.9

Q ss_pred             CCcEEEEECCCCccHHHHHHHHHcC
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      +.-.++|+|+.|+|||||++.+.+-
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4457899999999999999999874

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=97.00  E-value=0.00036  Score=51.74  Aligned_cols=23  Identities=22%  Similarity=0.371  Sum_probs=20.4

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++++|+.|+|||||++.+.+..
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~~   30 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYCENK   30 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            47899999999999999998753

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.00  E-value=0.00036  Score=51.58  Aligned_cols=23  Identities=17%  Similarity=0.380  Sum_probs=20.3

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++++|+.|+|||||++.+.+..
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998754

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.99  E-value=0.00033  Score=51.42  Aligned_cols=23  Identities=30%  Similarity=0.492  Sum_probs=20.5

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++++|+.|+|||||++.+.+..
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~~   27 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQNH   27 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            47899999999999999998754

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=96.99  E-value=0.00042  Score=51.94  Aligned_cols=23  Identities=35%  Similarity=0.504  Sum_probs=20.5

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++++|+.|+|||||++.+.+..
T Consensus        10 ~i~v~G~~~~GKSsli~~l~~~~   32 (182)
T 1ky3_A           10 KVIILGDSGVGKTSLMHRYVNDK   32 (182)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            48999999999999999988754

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=96.99  E-value=0.00038  Score=52.09  Aligned_cols=23  Identities=22%  Similarity=0.452  Sum_probs=20.4

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         9 ~i~v~G~~~~GKSsli~~l~~~~   31 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRYVTNK   31 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47999999999999999998753

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=96.98  E-value=0.00038  Score=51.40  Aligned_cols=22  Identities=32%  Similarity=0.546  Sum_probs=19.9

Q ss_pred             EEEEECCCCccHHHHHHHHHcC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      .++++|+.|+|||||++.+.+-
T Consensus         5 ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999874

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=96.98  E-value=0.00034  Score=52.40  Aligned_cols=23  Identities=39%  Similarity=0.611  Sum_probs=20.4

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|+.|+|||||++.+.+..
T Consensus        11 ~i~v~G~~~~GKssl~~~l~~~~   33 (181)
T 3tw8_B           11 KLLIIGDSGVGKSSLLLRFADNT   33 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHCSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998753

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.97  E-value=0.00033  Score=55.26  Aligned_cols=25  Identities=24%  Similarity=0.278  Sum_probs=21.8

Q ss_pred             CCcEEEEECCCCccHHHHHHHHHcC
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      .+.++.|+||+||||||+.+.|+..
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~   28 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTK   28 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4567899999999999999999854

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=96.96  E-value=0.00046  Score=58.54  Aligned_cols=28  Identities=25%  Similarity=0.209  Sum_probs=25.7

Q ss_pred             EEcCCcEEEEECCCCccHHHHHHHHHcC
Q psy8250          20 IAESGSLLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        20 ~i~~Ge~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      -+++|+++.|.||+|||||||+..++..
T Consensus       118 Gl~~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          118 GIESMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999999998874

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.96  E-value=0.00048  Score=55.97  Aligned_cols=25  Identities=24%  Similarity=0.384  Sum_probs=22.3

Q ss_pred             CCcEEEEECCCCccHHHHHHHHHcC
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      ++.++.|.|++||||||+.+.|+..
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~   27 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKI   27 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence            4668999999999999999999864

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=96.95  E-value=0.00036  Score=53.20  Aligned_cols=24  Identities=25%  Similarity=0.487  Sum_probs=21.0

Q ss_pred             cEEEEECCCCccHHHHHHHHHcCC
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      -.++|+|+.|+|||||++.+.+..
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 1svi_A           24 PEIALAGRSNVGKSSFINSLINRK   47 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999998753

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.95  E-value=0.00054  Score=53.85  Aligned_cols=27  Identities=22%  Similarity=0.414  Sum_probs=24.0

Q ss_pred             CCcEEEEECCCCccHHHHHHHHHcCCC
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      .+..+.|.||+|+|||||++.++....
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~   77 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARAN   77 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            578899999999999999999987654

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=96.95  E-value=0.00061  Score=57.21  Aligned_cols=28  Identities=29%  Similarity=0.368  Sum_probs=25.4

Q ss_pred             EEcCCcEEEEECCCCccHHHHHHHHHcC
Q psy8250          20 IAESGSLLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        20 ~i~~Ge~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      -+++|+++.|.||+|+|||||+..++..
T Consensus       103 Gl~~G~i~~i~G~~GsGKT~la~~la~~  130 (324)
T 2z43_A          103 GIETRTMTEFFGEFGSGKTQLCHQLSVN  130 (324)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence            4789999999999999999999988764

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=96.95  E-value=0.00035  Score=51.79  Aligned_cols=23  Identities=30%  Similarity=0.517  Sum_probs=20.4

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++++|+.|+|||||++.+.+..
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVEDK   27 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            47899999999999999998754

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.95  E-value=0.00038  Score=53.07  Aligned_cols=23  Identities=22%  Similarity=0.410  Sum_probs=20.4

Q ss_pred             cEEEEECCCCccHHHHHHHHHcC
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      .+++|+|+.||||||+.+.|+..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~   25 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKA   25 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999864

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.94  E-value=0.0004  Score=52.92  Aligned_cols=24  Identities=29%  Similarity=0.452  Sum_probs=21.1

Q ss_pred             CcEEEEECCCCccHHHHHHHHHcC
Q psy8250          24 GSLLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        24 Ge~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      ..+++|.|+.||||||+.+.|+..
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~~   29 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999999753

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=96.94  E-value=0.00038  Score=52.82  Aligned_cols=23  Identities=35%  Similarity=0.533  Sum_probs=21.1

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|+.|+|||||++.+.+..
T Consensus        25 ~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           25 EVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCc
Confidence            68999999999999999999864

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=96.93  E-value=0.00045  Score=52.15  Aligned_cols=23  Identities=30%  Similarity=0.494  Sum_probs=20.5

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|+.|+|||||++.+.+..
T Consensus         6 ki~v~G~~~~GKSsli~~l~~~~   28 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQNH   28 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            47899999999999999998754

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.93  E-value=0.00051  Score=53.59  Aligned_cols=24  Identities=21%  Similarity=0.494  Sum_probs=21.2

Q ss_pred             CcEEEEECCCCccHHHHHHHHHcC
Q psy8250          24 GSLLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        24 Ge~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      .-+++|.|+.||||||+.+.++..
T Consensus        12 ~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            357999999999999999999853

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.92  E-value=0.0005  Score=55.50  Aligned_cols=24  Identities=29%  Similarity=0.463  Sum_probs=21.2

Q ss_pred             cEEEEECCCCccHHHHHHHHHcCC
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      -+++|.|++||||||+.+.|+..+
T Consensus        23 ~iI~I~G~~GSGKST~a~~L~~~l   46 (252)
T 1uj2_A           23 FLIGVSGGTASGKSSVCAKIVQLL   46 (252)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHh
Confidence            479999999999999999998643

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=96.91  E-value=0.0005  Score=52.23  Aligned_cols=25  Identities=32%  Similarity=0.437  Sum_probs=21.9

Q ss_pred             EEEEECCCCccHHHHHHHHHcCCCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRIQG   50 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~~p   50 (212)
                      .++|+|+.|+|||||++.+.|....
T Consensus        16 ki~vvG~~~~GKssL~~~l~~~~~~   40 (198)
T 3t1o_A           16 KIVYYGPGLSGKTTNLKWIYSKVPE   40 (198)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred             EEEEECCCCCCHHHHHHHHHhhccc
Confidence            4789999999999999999987643

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=96.91  E-value=0.00039  Score=52.06  Aligned_cols=22  Identities=32%  Similarity=0.484  Sum_probs=20.2

Q ss_pred             EEEEECCCCccHHHHHHHHHcC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      .++|+|+.|+|||||++.+.+.
T Consensus        11 ~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           11 KLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999999875

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.91  E-value=0.00048  Score=50.92  Aligned_cols=22  Identities=27%  Similarity=0.489  Sum_probs=19.8

Q ss_pred             EEEEECCCCccHHHHHHHHHcC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      .++++|+.|+|||||++.+.+-
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999864

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=96.91  E-value=0.00047  Score=52.44  Aligned_cols=23  Identities=17%  Similarity=0.436  Sum_probs=20.8

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|+.|+|||||++.+.+..
T Consensus         9 ki~v~G~~~~GKSsli~~l~~~~   31 (208)
T 3clv_A            9 KTVLLGESSVGKSSIVLRLTKDT   31 (208)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            48999999999999999999863

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.91  E-value=0.00014  Score=56.83  Aligned_cols=36  Identities=19%  Similarity=0.307  Sum_probs=26.5

Q ss_pred             eeeeeEEEEcCCc---EEEEECCCCccHHHHHHHHHcCC
Q psy8250          13 YKESLSGIAESGS---LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        13 ~l~~vs~~i~~Ge---~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      +++.+.-.+..|.   .+.|.||+|+|||||++.++..+
T Consensus        31 ~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~   69 (250)
T 1njg_A           31 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL   69 (250)
T ss_dssp             HHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3333433344454   79999999999999999998754

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=96.90  E-value=0.00051  Score=57.25  Aligned_cols=23  Identities=35%  Similarity=0.494  Sum_probs=21.1

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|++|+|||||++.+.|.-
T Consensus         9 ~V~ivG~~nvGKSTLln~l~g~~   31 (301)
T 1wf3_A            9 FVAIVGKPNVGKSTLLNNLLGVK   31 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCc
Confidence            58999999999999999999853

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=96.90  E-value=0.00039  Score=52.61  Aligned_cols=23  Identities=26%  Similarity=0.429  Sum_probs=20.5

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|+.|+|||||++.+.+..
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGKK   25 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCcC
Confidence            37899999999999999999854

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=96.90  E-value=0.00055  Score=50.79  Aligned_cols=23  Identities=39%  Similarity=0.527  Sum_probs=20.4

Q ss_pred             cEEEEECCCCccHHHHHHHHHcC
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      -.++++|+.|+|||||++.+.+-
T Consensus         8 ~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            8 MRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            35899999999999999999764

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=96.90  E-value=0.00056  Score=51.19  Aligned_cols=23  Identities=30%  Similarity=0.693  Sum_probs=20.4

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         8 ki~v~G~~~~GKssl~~~l~~~~   30 (178)
T 2hxs_A            8 KIVVLGDGASGKTSLTTCFAQET   30 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHGGG
T ss_pred             EEEEECcCCCCHHHHHHHHHhCc
Confidence            47899999999999999998754

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=96.90  E-value=0.00048  Score=52.59  Aligned_cols=23  Identities=35%  Similarity=0.600  Sum_probs=20.6

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|+.|+|||||++.+.+..
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~~   49 (193)
T 2oil_A           27 KVVLIGESGVGKTNLLSRFTRNE   49 (193)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            48999999999999999998754

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.89  E-value=0.00046  Score=53.40  Aligned_cols=25  Identities=40%  Similarity=0.534  Sum_probs=22.5

Q ss_pred             cEEEEECCCCccHHHHHHHHHcCCC
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      ..+.|.||+|+|||||+++|+....
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~   79 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELA   79 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHH
Confidence            6889999999999999999997654

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=96.88  E-value=0.00056  Score=51.72  Aligned_cols=23  Identities=30%  Similarity=0.423  Sum_probs=20.5

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|+.|+|||||++.+.+..
T Consensus        13 ki~v~G~~~~GKSsli~~l~~~~   35 (195)
T 3bc1_A           13 KFLALGDSGVGKTSVLYQYTDGK   35 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998743

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.88  E-value=0.00063  Score=54.76  Aligned_cols=25  Identities=20%  Similarity=0.359  Sum_probs=22.2

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHc
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQ   46 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g   46 (212)
                      .++-+++|.||.||||||+.+.|+.
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3567899999999999999999975

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=96.88  E-value=0.00046  Score=59.30  Aligned_cols=22  Identities=27%  Similarity=0.563  Sum_probs=20.1

Q ss_pred             EEEEECCCCccHHHHHHHHHcC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      .++|+|++|+|||||++.|++.
T Consensus         3 ~v~IVG~pnvGKSTL~n~L~~~   24 (368)
T 2dby_A            3 AVGIVGLPNVGKSTLFNALTRA   24 (368)
T ss_dssp             SEEEECCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3799999999999999999985

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.88  E-value=0.0004  Score=58.55  Aligned_cols=28  Identities=25%  Similarity=0.483  Sum_probs=24.7

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcCCC
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      ..+..+.|.||+|+|||||++.+++...
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~   70 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH   70 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            4577899999999999999999998664

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.87  E-value=0.00028  Score=53.22  Aligned_cols=23  Identities=39%  Similarity=0.514  Sum_probs=20.3

Q ss_pred             CcEEEEECCCCccHHHHHHHHHc
Q psy8250          24 GSLLAIMGPSGAGKTTLLACISQ   46 (212)
Q Consensus        24 Ge~~~iiGpnGaGKSTLl~~i~g   46 (212)
                      .-.++|+|++|+|||||++.+.+
T Consensus        18 ~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           18 ELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTCC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhc
Confidence            44689999999999999999874

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=96.87  E-value=0.00055  Score=50.53  Aligned_cols=22  Identities=32%  Similarity=0.427  Sum_probs=19.5

Q ss_pred             EEEEECCCCccHHHHHHHHHcC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      .++++|+.|+|||||++.+.+-
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3789999999999999999763

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.87  E-value=0.0003  Score=58.37  Aligned_cols=26  Identities=27%  Similarity=0.493  Sum_probs=19.4

Q ss_pred             CCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      ++-++||.||+||||||+.+.|...+
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~l   29 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIF   29 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999998643

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.86  E-value=0.00062  Score=53.96  Aligned_cols=22  Identities=32%  Similarity=0.564  Sum_probs=19.7

Q ss_pred             EEEEECCCCccHHHHHHHHHcC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      +++|.|++||||||+.+.|+-.
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~   23 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDK   23 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999753

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.86  E-value=0.00021  Score=59.94  Aligned_cols=40  Identities=20%  Similarity=0.410  Sum_probs=30.2

Q ss_pred             CCcceeeeeEEEEcCC--cEEEEECCCCccHHHHHHHHHcCC
Q psy8250           9 GDTNYKESLSGIAESG--SLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus         9 ~~~~~l~~vs~~i~~G--e~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      |...+++.+.-.+..|  ..+.|.||+|+||||+++.+++.+
T Consensus        41 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l   82 (353)
T 1sxj_D           41 AQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL   82 (353)
T ss_dssp             SCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            4444555555556666  448999999999999999998864

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=96.84  E-value=0.00057  Score=51.39  Aligned_cols=23  Identities=22%  Similarity=0.335  Sum_probs=20.5

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|+.|+|||||++.+.+..
T Consensus        20 ki~v~G~~~~GKSsli~~l~~~~   42 (187)
T 2a9k_A           20 KVIMVGSGGVGKSALTLQFMYDE   42 (187)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Confidence            58999999999999999998743

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.84  E-value=0.00058  Score=51.18  Aligned_cols=23  Identities=35%  Similarity=0.524  Sum_probs=20.5

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++++|+.|+|||||++.+.+..
T Consensus        12 ~i~v~G~~~~GKssli~~l~~~~   34 (180)
T 2g6b_A           12 KVMLVGDSGVGKTCLLVRFKDGA   34 (180)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            48999999999999999998754

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=96.84  E-value=0.00063  Score=56.78  Aligned_cols=23  Identities=35%  Similarity=0.491  Sum_probs=21.2

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      +++|+|+.|+|||||++.+.|.-
T Consensus        12 ~v~ivG~~nvGKSTLin~l~g~~   34 (308)
T 3iev_A           12 YVAIVGKPNVGKSTLLNNLLGTK   34 (308)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            78999999999999999999853

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=96.83  E-value=0.00065  Score=51.61  Aligned_cols=23  Identities=30%  Similarity=0.492  Sum_probs=20.6

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++++|+.|+|||||++.+++..
T Consensus        23 ki~vvG~~~~GKSsli~~l~~~~   45 (190)
T 3con_A           23 KLVVVGAGGVGKSALTIQLIQNH   45 (190)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            58999999999999999998754

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=96.82  E-value=0.00068  Score=50.59  Aligned_cols=23  Identities=30%  Similarity=0.511  Sum_probs=20.7

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|+.|+|||||++.+.+..
T Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           17 KYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            48999999999999999998754

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.82  E-value=0.00066  Score=52.88  Aligned_cols=24  Identities=33%  Similarity=0.566  Sum_probs=21.4

Q ss_pred             EEEEECCCCccHHHHHHHHHcCCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      .++|+|+.|+|||||++.+.+...
T Consensus        14 ~i~~~G~~g~GKTsl~~~l~~~~~   37 (218)
T 1nrj_B           14 SIIIAGPQNSGKTSLLTLLTTDSV   37 (218)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            589999999999999999998653

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=96.81  E-value=0.00051  Score=51.27  Aligned_cols=22  Identities=27%  Similarity=0.443  Sum_probs=19.9

Q ss_pred             EEEEECCCCccHHHHHHHHHcC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      .++|+|+.|+|||||++.+.+-
T Consensus        16 ~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           16 KLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4899999999999999999864

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=96.81  E-value=0.00065  Score=50.97  Aligned_cols=23  Identities=30%  Similarity=0.523  Sum_probs=20.5

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++++|+.|+|||||++.+.+..
T Consensus        14 ki~v~G~~~~GKSsli~~l~~~~   36 (181)
T 2efe_B           14 KLVLLGDVGAGKSSLVLRFVKDQ   36 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            48999999999999999998754

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=96.80  E-value=0.0005  Score=56.22  Aligned_cols=23  Identities=35%  Similarity=0.511  Sum_probs=20.2

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|++|+|||||++.|.+.-
T Consensus        10 ~I~vvG~~g~GKSTLin~L~~~~   32 (274)
T 3t5d_A           10 TLMVVGESGLGKSTLINSLFLTD   32 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHSSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            38999999999999999987743

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.80  E-value=0.00059  Score=56.22  Aligned_cols=23  Identities=26%  Similarity=0.446  Sum_probs=20.6

Q ss_pred             CcEEEEECCCCccHHHHHHHHHc
Q psy8250          24 GSLLAIMGPSGAGKTTLLACISQ   46 (212)
Q Consensus        24 Ge~~~iiGpnGaGKSTLl~~i~g   46 (212)
                      .-+++|.|++||||||+.+.|+.
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            34799999999999999999983

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=96.79  E-value=0.00065  Score=52.14  Aligned_cols=23  Identities=22%  Similarity=0.335  Sum_probs=20.4

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        16 ki~v~G~~~~GKSsli~~l~~~~   38 (206)
T 2bov_A           16 KVIMVGSGGVGKSALTLQFMYDE   38 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            48999999999999999998643

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=96.78  E-value=0.00064  Score=54.82  Aligned_cols=24  Identities=21%  Similarity=0.378  Sum_probs=21.3

Q ss_pred             cEEEEECCCCccHHHHHHHHHcCC
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      -.++|+|+.|||||||++.|.|..
T Consensus        23 ~~I~lvG~~g~GKStl~n~l~~~~   46 (260)
T 2xtp_A           23 LRIILVGKTGTGKSAAGNSILRKQ   46 (260)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            368999999999999999999854

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=96.78  E-value=0.00076  Score=51.86  Aligned_cols=23  Identities=35%  Similarity=0.551  Sum_probs=20.7

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|+.|+|||||++.+.+..
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A           10 KVIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            58999999999999999998754

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.77  E-value=0.001  Score=50.03  Aligned_cols=27  Identities=30%  Similarity=0.566  Sum_probs=22.9

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      ..+..+.|.||.|+|||||++.++..+
T Consensus        41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           41 RTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            345678999999999999999998754

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=96.77  E-value=0.00071  Score=51.50  Aligned_cols=23  Identities=30%  Similarity=0.420  Sum_probs=20.7

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|+.|+|||||++.+.+..
T Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (189)
T 2gf9_A           24 KLLLIGNSSVGKTSFLFRYADDS   46 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999998754

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=96.76  E-value=0.00066  Score=55.22  Aligned_cols=23  Identities=26%  Similarity=0.444  Sum_probs=21.1

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|+.|||||||++.++|..
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~~   25 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNAN   25 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            58999999999999999999864

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=96.76  E-value=0.00056  Score=52.80  Aligned_cols=22  Identities=32%  Similarity=0.504  Sum_probs=19.8

Q ss_pred             EEEEECCCCccHHHHHHHHHcC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      .++|+|++|+|||||++.++|.
T Consensus        25 ki~vvG~~~vGKSsLi~~l~~~   46 (195)
T 3cbq_A           25 KVMLVGESGVGKSTLAGTFGGL   46 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHTCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            5899999999999999999753

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=96.76  E-value=0.00072  Score=51.48  Aligned_cols=23  Identities=35%  Similarity=0.556  Sum_probs=20.7

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|+.|+|||||++.+.+..
T Consensus        18 ki~v~G~~~~GKSsli~~l~~~~   40 (196)
T 3tkl_A           18 KLLLIGDSGVGKSCLLLRFADDT   40 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            48999999999999999998754

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=96.75  E-value=0.0006  Score=51.45  Aligned_cols=23  Identities=26%  Similarity=0.514  Sum_probs=20.5

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|+.|+|||||++.+.+..
T Consensus        12 ki~v~G~~~~GKSsli~~l~~~~   34 (186)
T 2bme_A           12 KFLVIGNAGTGKSCLLHQFIEKK   34 (186)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999998654

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=96.74  E-value=0.0008  Score=50.91  Aligned_cols=26  Identities=31%  Similarity=0.339  Sum_probs=22.2

Q ss_pred             CCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      +.-.++++|+.|+|||||++.+.+-.
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~~~   42 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNGED   42 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence            44568999999999999999998744

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=96.74  E-value=0.00085  Score=50.55  Aligned_cols=23  Identities=35%  Similarity=0.562  Sum_probs=20.4

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|+.|+|||||++.+.+..
T Consensus        20 ki~v~G~~~~GKSsl~~~l~~~~   42 (183)
T 3kkq_A           20 KLVVVGDGGVGKSALTIQFFQKI   42 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            47999999999999999998653

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=96.73  E-value=0.00079  Score=50.64  Aligned_cols=22  Identities=27%  Similarity=0.430  Sum_probs=19.7

Q ss_pred             EEEEECCCCccHHHHHHHHHcC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      .++++|+.|+|||||++.+.+-
T Consensus         7 ~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4799999999999999999864

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=96.72  E-value=0.00097  Score=52.83  Aligned_cols=28  Identities=32%  Similarity=0.655  Sum_probs=24.4

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcCCC
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      -+|.+++|.|+.||||||+.+.|...+.
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~   31 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAERLR   31 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            3688999999999999999999987664

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.72  E-value=0.00078  Score=54.00  Aligned_cols=29  Identities=38%  Similarity=0.594  Sum_probs=22.1

Q ss_pred             EcCCcEEEEECCCCccHHHHHHHHHcCCC
Q psy8250          21 AESGSLLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        21 i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      ..+|.++.|.|++||||||+.+.|...+.
T Consensus        22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~   50 (227)
T 3v9p_A           22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ   50 (227)
T ss_dssp             -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            46799999999999999999999987553

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.72  E-value=0.00067  Score=51.79  Aligned_cols=22  Identities=23%  Similarity=0.517  Sum_probs=20.2

Q ss_pred             EEEEECCCCccHHHHHHHHHcC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      .++|+|+.|+|||||++.+.+-
T Consensus        10 ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A           10 RVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            5899999999999999999874

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=96.71  E-value=0.00089  Score=51.47  Aligned_cols=23  Identities=30%  Similarity=0.420  Sum_probs=20.6

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|+.|+|||||++.+.+..
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (203)
T 1zbd_A           10 KILIIGNSSVGKTSFLFRYADDS   32 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47999999999999999998754

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=96.71  E-value=0.00075  Score=52.75  Aligned_cols=24  Identities=42%  Similarity=0.612  Sum_probs=21.2

Q ss_pred             cEEEEECCCCccHHHHHHHHHcCC
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      -.++|+|+.|+|||||++.+++..
T Consensus        31 ~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           31 VAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Confidence            478999999999999999998753

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=96.70  E-value=0.0007  Score=51.80  Aligned_cols=23  Identities=22%  Similarity=0.520  Sum_probs=20.5

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|+.|+|||||++.+.+..
T Consensus        25 ki~vvG~~~~GKSsli~~l~~~~   47 (192)
T 2fg5_A           25 KVCLLGDTGVGKSSIVCRFVQDH   47 (192)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            48999999999999999998754

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=96.70  E-value=0.00086  Score=51.00  Aligned_cols=23  Identities=26%  Similarity=0.316  Sum_probs=20.3

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        22 ki~v~G~~~~GKSsli~~l~~~~   44 (189)
T 1z06_A           22 KIIVIGDSNVGKTCLTYRFCAGR   44 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999998643

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=96.70  E-value=0.00044  Score=54.06  Aligned_cols=24  Identities=29%  Similarity=0.444  Sum_probs=21.6

Q ss_pred             cEEEEECCCCccHHHHHHHHHcCC
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      -.++|+|+.|+|||||++.+.+..
T Consensus        30 ~~i~v~G~~~~GKSslin~l~~~~   53 (223)
T 4dhe_A           30 PEIAFAGRSNAGKSTAINVLCNQK   53 (223)
T ss_dssp             CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCCC
Confidence            468999999999999999999864

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=96.70  E-value=0.00076  Score=51.15  Aligned_cols=23  Identities=30%  Similarity=0.514  Sum_probs=20.4

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++++|+.|+|||||++.+.+..
T Consensus         9 ki~v~G~~~vGKSsli~~l~~~~   31 (184)
T 1m7b_A            9 KIVVVGDSQCGKTALLHVFAKDC   31 (184)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998753

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.70  E-value=0.00088  Score=52.73  Aligned_cols=26  Identities=27%  Similarity=0.410  Sum_probs=22.2

Q ss_pred             CCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      +|-.++|+|+.||||||+.+.|+..+
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~l   29 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKEY   29 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh
Confidence            35678999999999999999998643

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=96.70  E-value=0.00097  Score=54.22  Aligned_cols=23  Identities=26%  Similarity=0.430  Sum_probs=20.9

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|+.|+|||||++.++|..
T Consensus         7 kI~lvG~~nvGKTsL~n~l~g~~   29 (258)
T 3a1s_A            7 KVALAGCPNVGKTSLFNALTGTK   29 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            48999999999999999999854

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.69  E-value=0.00094  Score=54.96  Aligned_cols=22  Identities=23%  Similarity=0.385  Sum_probs=20.1

Q ss_pred             cEEEEECCCCccHHHHHHHHHc
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQ   46 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g   46 (212)
                      .++.|.|++||||||+.+.|+.
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999986

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.69  E-value=0.0008  Score=52.73  Aligned_cols=22  Identities=27%  Similarity=0.398  Sum_probs=19.6

Q ss_pred             EEEEECCCCccHHHHHHHHHcC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      .++|.|+.||||||+.+.|+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEK   23 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999763

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=96.69  E-value=0.00096  Score=51.31  Aligned_cols=21  Identities=29%  Similarity=0.545  Sum_probs=19.6

Q ss_pred             EEEEECCCCccHHHHHHHHHc
Q psy8250          26 LLAIMGPSGAGKTTLLACISQ   46 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g   46 (212)
                      .++|+|++|+|||||++.+.|
T Consensus         8 kv~lvG~~~vGKSsL~~~~~~   28 (192)
T 2cjw_A            8 RVVLIGEQGVGKSTLANIFAG   28 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            489999999999999999986

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.68  E-value=0.00094  Score=56.73  Aligned_cols=24  Identities=33%  Similarity=0.649  Sum_probs=21.4

Q ss_pred             cEEEEECCCCccHHHHHHHHHcCC
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .+++|.||+|||||||.+.|+..+
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l   31 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKF   31 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHc
Confidence            479999999999999999998754

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=96.67  E-value=0.00079  Score=51.55  Aligned_cols=23  Identities=30%  Similarity=0.585  Sum_probs=19.5

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|+.|+|||||++.+.+..
T Consensus        28 ki~vvG~~~~GKSsLi~~l~~~~   50 (192)
T 2il1_A           28 QVIIIGSRGVGKTSLMERFTDDT   50 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHCC--
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            48999999999999999998743

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=96.67  E-value=0.00089  Score=51.09  Aligned_cols=23  Identities=30%  Similarity=0.531  Sum_probs=20.5

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|+.|+|||||++.+.+..
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~~   45 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLLLQFTDKR   45 (191)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            48999999999999999998754

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=96.67  E-value=0.00082  Score=55.63  Aligned_cols=23  Identities=26%  Similarity=0.499  Sum_probs=21.5

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|+.|||||||++.|+|.-
T Consensus        26 ~I~vvG~~~~GKSTlln~l~g~~   48 (315)
T 1jwy_B           26 QIVVVGSQSSGKSSVLENIVGRD   48 (315)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSC
T ss_pred             eEEEEcCCCCCHHHHHHHHHCCC
Confidence            69999999999999999999975

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=96.65  E-value=0.00079  Score=51.89  Aligned_cols=24  Identities=25%  Similarity=0.268  Sum_probs=21.3

Q ss_pred             cEEEEECCCCccHHHHHHHHHcCC
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      =.++|+|+.|+|||||++.+.+..
T Consensus        25 ~ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           25 RKVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCC
Confidence            358999999999999999998754

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=96.64  E-value=0.00099  Score=52.56  Aligned_cols=23  Identities=17%  Similarity=0.471  Sum_probs=20.8

Q ss_pred             cEEEEECCCCccHHHHHHHHHcC
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      -.++|+|+.|+|||||++.+.+.
T Consensus        30 ~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           30 KTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999874

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=96.64  E-value=0.00098  Score=50.91  Aligned_cols=23  Identities=30%  Similarity=0.472  Sum_probs=20.8

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        25 ki~~vG~~~~GKSsl~~~l~~~~   47 (194)
T 3reg_A           25 KIVVVGDGAVGKTCLLLAFSKGE   47 (194)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            58999999999999999998754

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=96.64  E-value=0.00098  Score=50.77  Aligned_cols=23  Identities=30%  Similarity=0.414  Sum_probs=20.4

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        24 ki~v~G~~~~GKSsli~~l~~~~   46 (188)
T 1zd9_A           24 ELTLVGLQYSGKTTFVNVIASGQ   46 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999998643

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=96.64  E-value=0.00091  Score=54.81  Aligned_cols=23  Identities=26%  Similarity=0.489  Sum_probs=21.0

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|..|||||||++.++|..
T Consensus         5 ~I~lvG~~n~GKSTLin~l~g~~   27 (274)
T 3i8s_A            5 TIGLIGNPNSGKTTLFNQLTGSR   27 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999999854

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.63  E-value=0.001  Score=50.95  Aligned_cols=23  Identities=35%  Similarity=0.575  Sum_probs=20.6

Q ss_pred             cEEEEECCCCccHHHHHHHHHcC
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      -.++|+|+.|+|||||++.+.+-
T Consensus        29 ~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           29 VKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            35899999999999999999875

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=96.63  E-value=0.00092  Score=50.25  Aligned_cols=21  Identities=29%  Similarity=0.441  Sum_probs=19.2

Q ss_pred             EEEEECCCCccHHHHHHHHHc
Q psy8250          26 LLAIMGPSGAGKTTLLACISQ   46 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g   46 (212)
                      .++|+|+.|+|||||++.+.+
T Consensus         8 ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            8 KIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            478999999999999999984

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=96.62  E-value=0.0009  Score=51.64  Aligned_cols=23  Identities=26%  Similarity=0.498  Sum_probs=19.6

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|+.|+|||||++.+.+..
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~~   49 (200)
T 2o52_A           27 KFLVIGSAGTGKSCLLHQFIENK   49 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHC--
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            58999999999999999998643

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=96.62  E-value=0.0011  Score=50.20  Aligned_cols=23  Identities=35%  Similarity=0.593  Sum_probs=20.7

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|+.|+|||||++.+.+..
T Consensus        17 ~i~v~G~~~~GKssli~~l~~~~   39 (195)
T 1x3s_A           17 KILIIGESGVGKSSLLLRFTDDT   39 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999998754

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.62  E-value=0.001  Score=51.37  Aligned_cols=25  Identities=28%  Similarity=0.397  Sum_probs=21.5

Q ss_pred             CcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          24 GSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        24 Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .=.++|+|+.|+|||||++.+.+-.
T Consensus        20 ~~~i~v~G~~~~GKSsli~~l~~~~   44 (213)
T 3cph_A           20 IMKILLIGDSGVGKSCLLVRFVEDK   44 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCC
Confidence            3468999999999999999998643

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=96.62  E-value=0.0011  Score=50.65  Aligned_cols=24  Identities=21%  Similarity=0.339  Sum_probs=21.0

Q ss_pred             cEEEEECCCCccHHHHHHHHHcCC
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      -.++|+|+.|+|||||++.+.+..
T Consensus        18 ~ki~v~G~~~~GKSsl~~~l~~~~   41 (199)
T 4bas_A           18 LQVVMCGLDNSGKTTIINQVKPAQ   41 (199)
T ss_dssp             EEEEEECCTTSCHHHHHHHHSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCC
Confidence            368999999999999999998743

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.62  E-value=0.0014  Score=52.18  Aligned_cols=27  Identities=30%  Similarity=0.540  Sum_probs=23.0

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      ..+..+.|+|+.||||||+.+.|+..+
T Consensus        14 ~~~~~I~l~G~~GsGKsT~a~~La~~l   40 (233)
T 1ak2_A           14 PKGVRAVLLGPPGAGKGTQAPKLAKNF   40 (233)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            345689999999999999999998643

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=96.62  E-value=0.001  Score=51.18  Aligned_cols=25  Identities=16%  Similarity=0.361  Sum_probs=21.6

Q ss_pred             CcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          24 GSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        24 Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      -=.++|+|+.|+|||||++.+.+..
T Consensus        28 ~~ki~v~G~~~~GKSsli~~l~~~~   52 (199)
T 2p5s_A           28 AYKIVLAGDAAVGKSSFLMRLCKNE   52 (199)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred             CeEEEEECcCCCCHHHHHHHHHhCC
Confidence            3468999999999999999998754

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.61  E-value=0.001  Score=50.49  Aligned_cols=23  Identities=39%  Similarity=0.456  Sum_probs=20.4

Q ss_pred             cEEEEECCCCccHHHHHHHHHcC
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      -.++|+|+.|+|||||++.+.+-
T Consensus        17 ~~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A           17 HKVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTT
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            35899999999999999999853

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=96.61  E-value=0.0011  Score=53.44  Aligned_cols=28  Identities=29%  Similarity=0.527  Sum_probs=24.2

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcCCC
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      .+|.+++|.|++||||||+.+.|...+.
T Consensus        25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~   52 (236)
T 3lv8_A           25 MNAKFIVIEGLEGAGKSTAIQVVVETLQ   52 (236)
T ss_dssp             -CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3588999999999999999999987654

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.61  E-value=0.00086  Score=52.15  Aligned_cols=23  Identities=30%  Similarity=0.601  Sum_probs=20.2

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|++|+|||||++.+.+..
T Consensus        28 ki~lvG~~~vGKSsLi~~l~~~~   50 (201)
T 2ew1_A           28 KIVLIGNAGVGKTCLVRRFTQGL   50 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            58999999999999999887643

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.61  E-value=0.0009  Score=55.79  Aligned_cols=26  Identities=31%  Similarity=0.434  Sum_probs=22.9

Q ss_pred             CcEEEEECCCCccHHHHHHHHHcCCC
Q psy8250          24 GSLLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        24 Ge~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      +..+.|.||+|+|||||++.|++.+.
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~~~~~   62 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAGNEAK   62 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHH
Confidence            46789999999999999999998654

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.60  E-value=0.00097  Score=50.88  Aligned_cols=23  Identities=35%  Similarity=0.455  Sum_probs=20.7

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|+.|+|||||++.+.+..
T Consensus        25 ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           25 KLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHhcCC
Confidence            48999999999999999998754

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=96.60  E-value=0.0014  Score=49.16  Aligned_cols=24  Identities=25%  Similarity=0.313  Sum_probs=20.9

Q ss_pred             cEEEEECCCCccHHHHHHHHHcCC
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      =.++++|+.|+|||||++.+.+-.
T Consensus         9 ~ki~v~G~~~~GKssl~~~~~~~~   32 (182)
T 3bwd_D            9 IKCVTVGDGAVGKTCLLISYTSNT   32 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCC
Confidence            358999999999999999998643

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=96.60  E-value=0.001  Score=51.10  Aligned_cols=24  Identities=17%  Similarity=0.434  Sum_probs=21.4

Q ss_pred             EEEEECCCCccHHHHHHHHHcCCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      .++|+|++|+|||||++.+.+...
T Consensus        22 ki~~vG~~~vGKTsLi~~l~~~~~   45 (196)
T 3llu_A           22 RILLMGLRRSGKSSIQKVVFHKMS   45 (196)
T ss_dssp             EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhcCC
Confidence            589999999999999999998654

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=96.60  E-value=0.00088  Score=51.68  Aligned_cols=23  Identities=39%  Similarity=0.569  Sum_probs=20.5

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|+.|+|||||++.+.+..
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (206)
T 2bcg_Y           10 KLLLIGNSGVGKSCLLLRFSDDT   32 (206)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            48999999999999999998754

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=96.60  E-value=0.0012  Score=51.41  Aligned_cols=23  Identities=39%  Similarity=0.491  Sum_probs=20.7

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|+.|+|||||++.+.+..
T Consensus        27 ki~vvG~~~~GKSsLi~~l~~~~   49 (217)
T 2f7s_A           27 KLLALGDSGVGKTTFLYRYTDNK   49 (217)
T ss_dssp             EEEEESCTTSSHHHHHHHHHCSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            48999999999999999998754

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.59  E-value=0.0012  Score=53.76  Aligned_cols=29  Identities=28%  Similarity=0.483  Sum_probs=24.9

Q ss_pred             EcCCcEEEEECCCCccHHHHHHHHHcCCC
Q psy8250          21 AESGSLLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        21 i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      +.++..+.|.||+|+|||||.+.++..+.
T Consensus        48 ~~~~~~~ll~G~~GtGKT~la~~la~~~~   76 (285)
T 3h4m_A           48 IEPPKGILLYGPPGTGKTLLAKAVATETN   76 (285)
T ss_dssp             CCCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred             CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            35677799999999999999999998653

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=96.59  E-value=0.00087  Score=50.25  Aligned_cols=23  Identities=22%  Similarity=0.407  Sum_probs=20.4

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++++|+.|+|||||++.+.+-.
T Consensus         9 ki~~vG~~~vGKTsli~~l~~~~   31 (178)
T 2iwr_A            9 RLGVLGDARSGKSSLIHRFLTGS   31 (178)
T ss_dssp             EEEEECCGGGCHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            47999999999999999998743

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=96.58  E-value=0.0012  Score=53.97  Aligned_cols=26  Identities=19%  Similarity=0.386  Sum_probs=22.6

Q ss_pred             cEEEEECCCCccHHHHHHHHHcCCCC
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQRIQG   50 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g~~~p   50 (212)
                      -.++++|.+|+|||||++.+.|....
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~  125 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRAS  125 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-
T ss_pred             hheEEeCCCCCCHHHHHHHHhccccc
Confidence            47999999999999999999986654

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.58  E-value=0.0015  Score=55.47  Aligned_cols=26  Identities=31%  Similarity=0.571  Sum_probs=23.0

Q ss_pred             CCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      ++.+++|+||+|||||||...|+..+
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l   64 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHF   64 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHC
Confidence            46789999999999999999999644

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=96.58  E-value=0.0013  Score=58.12  Aligned_cols=31  Identities=26%  Similarity=0.439  Sum_probs=26.7

Q ss_pred             EEEcCCcEEEEECCCCccHHHHHHHHHcCCC
Q psy8250          19 GIAESGSLLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        19 ~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      +.+-+|+..+|+||+|+|||||++.|+....
T Consensus       146 ~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~  176 (473)
T 1sky_E          146 APYIKGGKIGLFGGAGVGKTVLIQELIHNIA  176 (473)
T ss_dssp             SCEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred             hhhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence            4567899999999999999999999887543

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=96.58  E-value=0.00076  Score=51.36  Aligned_cols=24  Identities=21%  Similarity=0.317  Sum_probs=21.2

Q ss_pred             cEEEEECCCCccHHHHHHHHHcCC
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      =.++|+|+.|+|||||++.+.+..
T Consensus        22 ~ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           22 VHVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCC
Confidence            358999999999999999998754

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.58  E-value=0.0012  Score=57.46  Aligned_cols=26  Identities=23%  Similarity=0.340  Sum_probs=22.9

Q ss_pred             EcCCcEEEEECCCCccHHHHHHHHHc
Q psy8250          21 AESGSLLAIMGPSGAGKTTLLACISQ   46 (212)
Q Consensus        21 i~~Ge~~~iiGpnGaGKSTLl~~i~g   46 (212)
                      -....++.|+|++||||||+.+.|+.
T Consensus       255 ~~~~~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          255 SPNPEVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             CSSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34578999999999999999999875

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=96.58  E-value=0.0012  Score=50.56  Aligned_cols=26  Identities=23%  Similarity=0.381  Sum_probs=20.6

Q ss_pred             CCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      +.-.++|+|+.|+|||||++.+.+-.
T Consensus        19 ~~~ki~~~G~~~~GKssl~~~l~~~~   44 (201)
T 2q3h_A           19 RGVKCVLVGDGAVGKTSLVVSYTTNG   44 (201)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHC--
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCC
Confidence            34468999999999999999998643

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.57  E-value=0.0014  Score=55.19  Aligned_cols=25  Identities=36%  Similarity=0.674  Sum_probs=21.8

Q ss_pred             CcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          24 GSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        24 Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      +.+++|+||+|||||||...|+-.+
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~   27 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRL   27 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhC
Confidence            4578999999999999999998643

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=96.56  E-value=0.0013  Score=52.17  Aligned_cols=27  Identities=30%  Similarity=0.469  Sum_probs=24.2

Q ss_pred             CCcEEEEECCCCccHHHHHHHHHcCCC
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      +|.++.+-|++||||||+++.|...+.
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~   28 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLE   28 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            488999999999999999999987664

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=96.56  E-value=0.00098  Score=50.40  Aligned_cols=22  Identities=41%  Similarity=0.480  Sum_probs=20.2

Q ss_pred             EEEEECCCCccHHHHHHHHHcC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      .++++|+.|+|||||++.+.+.
T Consensus        23 ~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           23 KVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             EEEEEEETTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999874

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.55  E-value=0.0013  Score=49.34  Aligned_cols=27  Identities=22%  Similarity=0.475  Sum_probs=22.9

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      ..+..+.|.||.|+|||||++.++..+
T Consensus        41 ~~~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           41 RTKNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            345678899999999999999998755

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.54  E-value=0.0012  Score=51.57  Aligned_cols=25  Identities=28%  Similarity=0.525  Sum_probs=21.8

Q ss_pred             CcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          24 GSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        24 Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      +-+++|.|++||||||+.+.|+..+
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            3578999999999999999998744

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=96.54  E-value=0.0014  Score=50.88  Aligned_cols=23  Identities=22%  Similarity=0.296  Sum_probs=20.6

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         9 ki~vvG~~~~GKTsli~~l~~~~   31 (214)
T 2fh5_B            9 AVLFVGLCDSGKTLLFVRLLTGQ   31 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998754

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=96.53  E-value=0.0015  Score=49.88  Aligned_cols=23  Identities=39%  Similarity=0.520  Sum_probs=20.1

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        23 ki~vvG~~~vGKTsLi~~l~~~~   45 (187)
T 3c5c_A           23 NLAILGRRGAGKSALTVKFLTKR   45 (187)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Confidence            58999999999999998887643

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=96.53  E-value=0.0012  Score=53.54  Aligned_cols=23  Identities=17%  Similarity=0.434  Sum_probs=21.0

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|+.|+|||||++.+.|..
T Consensus        38 ~I~lvG~~g~GKSSLin~l~~~~   60 (262)
T 3def_A           38 TVLVLGKGGVGKSSTVNSLIGEQ   60 (262)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999999854

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.51  E-value=0.0012  Score=51.12  Aligned_cols=24  Identities=33%  Similarity=0.484  Sum_probs=21.3

Q ss_pred             cEEEEECCCCccHHHHHHHHHcCC
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      -.++++|+.|+|||||++.+.+-.
T Consensus        26 ~ki~vvG~~~~GKSsli~~l~~~~   49 (207)
T 2fv8_A           26 KKLVVVGDGACGKTCLLIVFSKDE   49 (207)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred             cEEEEECcCCCCHHHHHHHHhcCC
Confidence            368999999999999999998754

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.51  E-value=0.0015  Score=55.16  Aligned_cols=24  Identities=33%  Similarity=0.657  Sum_probs=21.4

Q ss_pred             cEEEEECCCCccHHHHHHHHHcCC
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .+++|+||+|||||||.+.|+..+
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l   29 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADAL   29 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            478999999999999999999754

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=96.50  E-value=0.0013  Score=51.26  Aligned_cols=22  Identities=32%  Similarity=0.617  Sum_probs=19.7

Q ss_pred             EEEEECCCCccHHHHHHHHHcC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      .++|+|+.|+|||||++.+.+-
T Consensus        36 ki~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           36 KVVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC-
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999999874

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.50  E-value=0.0017  Score=51.86  Aligned_cols=27  Identities=22%  Similarity=0.383  Sum_probs=24.3

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .+|.+++|.|++||||||+.+.|...+
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~l   45 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEYL   45 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            568999999999999999999998655

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=96.50  E-value=0.0012  Score=51.35  Aligned_cols=23  Identities=30%  Similarity=0.514  Sum_probs=20.9

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|+.|+|||||++.+.+..
T Consensus        30 ki~vvG~~~vGKSsLi~~l~~~~   52 (205)
T 1gwn_A           30 KIVVVGDSQCGKTALLHVFAKDC   52 (205)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998854

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=96.49  E-value=0.0012  Score=54.14  Aligned_cols=23  Identities=30%  Similarity=0.479  Sum_probs=21.5

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|..|+|||||++.|+|..
T Consensus        28 ~i~vvG~~~~GKSSLln~l~g~~   50 (299)
T 2aka_B           28 QIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             eEEEEeCCCCCHHHHHHHHHCCC
Confidence            69999999999999999999865

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=96.49  E-value=0.00083  Score=50.60  Aligned_cols=23  Identities=39%  Similarity=0.547  Sum_probs=9.2

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|+.|+|||||++.+.+..
T Consensus        10 ki~v~G~~~~GKssl~~~l~~~~   32 (183)
T 2fu5_C           10 KLLLIGDSGVGKTCVLFRFSEDA   32 (183)
T ss_dssp             EEEEECCCCC-------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            48999999999999999987643

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=96.49  E-value=0.0013  Score=53.54  Aligned_cols=23  Identities=26%  Similarity=0.481  Sum_probs=20.9

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++++|+.|+|||||++.|.|..
T Consensus        41 ~I~vvG~~g~GKSSLin~l~~~~   63 (270)
T 1h65_A           41 TILVMGKGGVGKSSTVNSIIGER   63 (270)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58899999999999999999854

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=96.48  E-value=0.0016  Score=51.82  Aligned_cols=28  Identities=32%  Similarity=0.461  Sum_probs=25.3

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcCCC
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      .+|.++.+-|+.||||||+.+.|...+.
T Consensus         3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~   30 (216)
T 3tmk_A            3 GRGKLILIEGLDRTGKTTQCNILYKKLQ   30 (216)
T ss_dssp             CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4689999999999999999999998665

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=96.45  E-value=0.0016  Score=54.44  Aligned_cols=27  Identities=30%  Similarity=0.289  Sum_probs=24.6

Q ss_pred             EEcCCcEEEEECCCCccHHHHHHHHHc
Q psy8250          20 IAESGSLLAIMGPSGAGKTTLLACISQ   46 (212)
Q Consensus        20 ~i~~Ge~~~iiGpnGaGKSTLl~~i~g   46 (212)
                      -+++|+++.|.||+|+|||||...++.
T Consensus        94 Gl~~g~i~~i~G~~gsGKT~la~~la~  120 (322)
T 2i1q_A           94 GLESQSVTEFAGVFGSGKTQIMHQSCV  120 (322)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999999988875

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.45  E-value=0.0015  Score=52.09  Aligned_cols=25  Identities=24%  Similarity=0.377  Sum_probs=22.5

Q ss_pred             CcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          24 GSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        24 Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      |.+++|-|+.||||||+.+.|+..+
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~l   26 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence            5689999999999999999998755

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=96.43  E-value=0.0013  Score=50.70  Aligned_cols=23  Identities=39%  Similarity=0.528  Sum_probs=20.5

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~~   49 (201)
T 2gco_A           27 KLVIVGDGACGKTCLLIVFSKDQ   49 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            48999999999999999998743

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=96.41  E-value=0.0012  Score=50.63  Aligned_cols=24  Identities=29%  Similarity=0.358  Sum_probs=20.7

Q ss_pred             CcEEEEECCCCccHHHHHHHHHcC
Q psy8250          24 GSLLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        24 Ge~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      .-.++|+|+.|+|||||++.+.+-
T Consensus        29 ~~ki~v~G~~~vGKSsLi~~l~~~   52 (192)
T 2b6h_A           29 QMRILMVGLDAAGKTTILYKLKLG   52 (192)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHhC
Confidence            345899999999999999999753

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=96.40  E-value=0.002  Score=50.69  Aligned_cols=22  Identities=27%  Similarity=0.490  Sum_probs=20.2

Q ss_pred             EEEEECCCCccHHHHHHHHHcC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      .++|+|++|+|||||++.+.|.
T Consensus        39 kVvlvG~~~vGKSSLl~r~~~~   60 (211)
T 2g3y_A           39 RVVLIGEQGVGKSTLANIFAGV   60 (211)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999999874

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.39  E-value=0.0015  Score=49.85  Aligned_cols=23  Identities=26%  Similarity=0.397  Sum_probs=20.5

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++++|+.|+|||||++.+.+-.
T Consensus        20 ki~v~G~~~~GKssli~~l~~~~   42 (194)
T 2atx_A           20 KCVVVGDGAVGKTCLLMSYANDA   42 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998653

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.39  E-value=0.0019  Score=51.36  Aligned_cols=28  Identities=21%  Similarity=0.373  Sum_probs=24.0

Q ss_pred             EEcCCcEEEEECCCCccHHHHHHHHHcC
Q psy8250          20 IAESGSLLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        20 ~i~~Ge~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      .+.+..++.|+||.||||+|..+.|+-.
T Consensus        25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~   52 (217)
T 3umf_A           25 KLAKAKVIFVLGGPGSGKGTQCEKLVQK   52 (217)
T ss_dssp             CTTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred             hccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3466778999999999999999999854

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.38  E-value=0.0016  Score=51.05  Aligned_cols=24  Identities=29%  Similarity=0.523  Sum_probs=20.9

Q ss_pred             cEEEEECCCCccHHHHHHHHHcCC
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      -.++|+|+.|+|||||++.++...
T Consensus        39 ~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           39 VAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Confidence            468999999999999999988654

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=96.37  E-value=0.0015  Score=57.45  Aligned_cols=22  Identities=32%  Similarity=0.588  Sum_probs=20.7

Q ss_pred             EEEEECCCCccHHHHHHHHHcC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      .++|+|++|+|||||++.|+|.
T Consensus        25 ~V~lvG~~nvGKSTL~n~l~~~   46 (456)
T 4dcu_A           25 VVAIVGRPNVGKSTIFNRIAGE   46 (456)
T ss_dssp             EEEEECSSSSSHHHHHHHHEEE
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            6999999999999999999884

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=96.36  E-value=0.0016  Score=57.03  Aligned_cols=25  Identities=40%  Similarity=0.478  Sum_probs=22.3

Q ss_pred             CcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          24 GSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        24 Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      +..+.|.||+|+|||||+++|++.+
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l  154 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYV  154 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4578999999999999999999865

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.35  E-value=0.0012  Score=53.43  Aligned_cols=28  Identities=25%  Similarity=0.298  Sum_probs=23.5

Q ss_pred             EcCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          21 AESGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        21 i~~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      ..++.+++|.|+.||||||+.+.|+..+
T Consensus        21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l   48 (263)
T 1p5z_B           21 GTRIKKISIEGNIAAGKSTFVNILKQLC   48 (263)
T ss_dssp             --CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHhc
Confidence            3578899999999999999999988654

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.35  E-value=0.0022  Score=51.29  Aligned_cols=27  Identities=26%  Similarity=0.457  Sum_probs=23.0

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      ....-+.|.||.|+|||||.+.++...
T Consensus        37 ~~~~~vll~G~~GtGKT~la~~la~~~   63 (262)
T 2qz4_A           37 KVPKGALLLGPPGCGKTLLAKAVATEA   63 (262)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            445568899999999999999998754

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=96.32  E-value=0.002  Score=50.55  Aligned_cols=23  Identities=30%  Similarity=0.598  Sum_probs=20.6

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|+.|+|||||++.+.+..
T Consensus        15 ki~v~G~~~vGKSsli~~l~~~~   37 (223)
T 3cpj_B           15 KIVLIGDSGVGKSNLLSRFTKNE   37 (223)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            58999999999999999998754

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=96.32  E-value=0.0029  Score=50.08  Aligned_cols=25  Identities=32%  Similarity=0.474  Sum_probs=22.4

Q ss_pred             EcCCcEEEEECCCCccHHHHHHHHH
Q psy8250          21 AESGSLLAIMGPSGAGKTTLLACIS   45 (212)
Q Consensus        21 i~~Ge~~~iiGpnGaGKSTLl~~i~   45 (212)
                      +++|+++.|.|+.|+|||||.--++
T Consensus        27 l~~G~l~~i~G~pG~GKT~l~l~~~   51 (251)
T 2zts_A           27 FPEGTTVLLTGGTGTGKTTFAAQFI   51 (251)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence            7899999999999999999976543

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.32  E-value=0.0031  Score=48.59  Aligned_cols=33  Identities=15%  Similarity=0.053  Sum_probs=24.5

Q ss_pred             eeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHc
Q psy8250          13 YKESLSGIAESGSLLAIMGPSGAGKTTLLACISQ   46 (212)
Q Consensus        13 ~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g   46 (212)
                      .++..-.. -.|.-+.|.|+||+|||||...+..
T Consensus         6 ~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~   38 (181)
T 3tqf_A            6 TWHANFLV-IDKMGVLITGEANIGKSELSLALID   38 (181)
T ss_dssp             EEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred             EEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence            34333333 4588899999999999999887753

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.31  E-value=0.0025  Score=53.49  Aligned_cols=25  Identities=28%  Similarity=0.515  Sum_probs=21.7

Q ss_pred             CcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          24 GSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        24 Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      ..+++|+||+|||||||...|+..+
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~~   34 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKIL   34 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhC
Confidence            4578999999999999999998643

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=96.30  E-value=0.00049  Score=55.64  Aligned_cols=22  Identities=32%  Similarity=0.659  Sum_probs=19.7

Q ss_pred             EEEECCCCccHHHHHHHHHcCC
Q psy8250          27 LAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        27 ~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      +.|.||+|+|||||.++|+...
T Consensus        47 vll~G~~GtGKT~la~~la~~~   68 (268)
T 2r62_A           47 VLLVGPPGTGKTLLAKAVAGEA   68 (268)
T ss_dssp             CCCBCSSCSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHh
Confidence            7799999999999999998743

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=96.30  E-value=0.00088  Score=52.15  Aligned_cols=23  Identities=26%  Similarity=0.481  Sum_probs=20.0

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|+.|+|||||++.+.+..
T Consensus        13 ki~vvG~~~~GKSsli~~l~~~~   35 (218)
T 4djt_A           13 KICLIGDGGVGKTTYINRVLDGR   35 (218)
T ss_dssp             EEEEECCTTSSHHHHHCBCTTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999988643

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=96.29  E-value=0.00082  Score=51.58  Aligned_cols=22  Identities=23%  Similarity=0.566  Sum_probs=4.3

Q ss_pred             EEEEECCCCccHHHHHHHHHcC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      .++|+|+.|+|||||++.+.+.
T Consensus        22 ~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           22 KVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEC-----------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999998875

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=96.28  E-value=0.0018  Score=49.99  Aligned_cols=23  Identities=22%  Similarity=0.381  Sum_probs=20.4

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|+.|+|||||++.+.+..
T Consensus        31 ki~vvG~~~vGKSsli~~l~~~~   53 (201)
T 2hup_A           31 KLVLVGDASVGKTCVVQRFKTGA   53 (201)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhhCC
Confidence            48999999999999999998654

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=96.25  E-value=0.0023  Score=50.01  Aligned_cols=23  Identities=26%  Similarity=0.515  Sum_probs=20.5

Q ss_pred             cEEEEECCCCccHHHHHHHHHcC
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      =.++|+|+.|+|||||++.+.+-
T Consensus        28 ~ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           28 CKLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCCCHHHHHHHHhcC
Confidence            35899999999999999998865

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=96.25  E-value=0.0052  Score=58.17  Aligned_cols=26  Identities=27%  Similarity=0.555  Sum_probs=22.7

Q ss_pred             cEEEEECCCCccHHHHHHHHHcCCCC
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQRIQG   50 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g~~~p   50 (212)
                      ..+.|.||+|+|||++.+.|+..+..
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~~~  614 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATLFD  614 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            47889999999999999999987643

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=96.23  E-value=0.0021  Score=49.68  Aligned_cols=23  Identities=26%  Similarity=0.385  Sum_probs=20.1

Q ss_pred             cEEEEECCCCccHHHHHHHHHcC
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      =.++++|+.|+|||||++.+.+.
T Consensus        31 ~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           31 IKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCCCHHHHHHHHHhC
Confidence            36899999999999999888753

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=96.21  E-value=0.0012  Score=50.08  Aligned_cols=22  Identities=27%  Similarity=0.406  Sum_probs=19.7

Q ss_pred             cEEEEECCCCccHHHHHHHHHc
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQ   46 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g   46 (212)
                      =.++++|+.|+|||||++.+.+
T Consensus        23 ~~i~v~G~~~~GKssli~~l~~   44 (189)
T 2x77_A           23 IRVLMLGLDNAGKTSILYRLHL   44 (189)
T ss_dssp             EEEEEEEETTSSHHHHHHHTCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHc
Confidence            3589999999999999999865

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=96.21  E-value=0.0027  Score=48.92  Aligned_cols=23  Identities=48%  Similarity=0.647  Sum_probs=19.6

Q ss_pred             CCcEEEEECCCCccHHHHH-HHHH
Q psy8250          23 SGSLLAIMGPSGAGKTTLL-ACIS   45 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl-~~i~   45 (212)
                      +|.++.+.||.||||||++ +.+.
T Consensus         2 ~g~i~vi~G~~gsGKTT~ll~~~~   25 (184)
T 2orw_A            2 SGKLTVITGPMYSGKTTELLSFVE   25 (184)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHH
Confidence            4889999999999999997 5544

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=96.17  E-value=0.0035  Score=53.54  Aligned_cols=28  Identities=32%  Similarity=0.491  Sum_probs=24.9

Q ss_pred             EcCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          21 AESGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        21 i~~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      +++|+++.|.||+|+|||||...++...
T Consensus        60 l~~G~ii~I~G~pGsGKTtLal~la~~~   87 (356)
T 1u94_A           60 LPMGRIVEIYGPESSGKTTLTLQVIAAA   87 (356)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999998877543

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=96.16  E-value=0.0024  Score=56.08  Aligned_cols=28  Identities=32%  Similarity=0.509  Sum_probs=24.4

Q ss_pred             CCcEEEEECCCCccHHHHHHHHHcCCCC
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACISQRIQG   50 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~~p   50 (212)
                      ++.+++++|++|+||||++..|+..+..
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~  126 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQK  126 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence            4689999999999999999999876653

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=96.15  E-value=0.0034  Score=49.34  Aligned_cols=26  Identities=31%  Similarity=0.673  Sum_probs=23.0

Q ss_pred             CcEEEEECCCCccHHHHHHHHHcCCC
Q psy8250          24 GSLLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        24 Ge~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      |.+++|=|+-||||||+.+.|...+.
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~~L~   27 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYHRLV   27 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence            56899999999999999999987664

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=96.14  E-value=0.0007  Score=59.57  Aligned_cols=36  Identities=36%  Similarity=0.620  Sum_probs=27.8

Q ss_pred             eeeEEEEcCCcE--EEEECCCCccHHHHHHHHHcCCCC
Q psy8250          15 ESLSGIAESGSL--LAIMGPSGAGKTTLLACISQRIQG   50 (212)
Q Consensus        15 ~~vs~~i~~Ge~--~~iiGpnGaGKSTLl~~i~g~~~p   50 (212)
                      +.+.-.+..|.+  +.|.||+|+|||||.++|+.....
T Consensus        39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~   76 (447)
T 3pvs_A           39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANA   76 (447)
T ss_dssp             SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCC
Confidence            344444556665  889999999999999999987643

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=96.14  E-value=0.0023  Score=49.46  Aligned_cols=23  Identities=26%  Similarity=0.478  Sum_probs=20.3

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        11 ki~i~G~~~~GKTsli~~l~~~~   33 (212)
T 2j0v_A           11 KCVTVGDGAVGKTCMLICYTSNK   33 (212)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            48999999999999999998643

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.13  E-value=0.0033  Score=49.45  Aligned_cols=23  Identities=35%  Similarity=0.635  Sum_probs=20.0

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      ++.|+||.||||+|..+.|+..+
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~   24 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEK   24 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999998643

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.10  E-value=0.0034  Score=46.15  Aligned_cols=28  Identities=21%  Similarity=0.253  Sum_probs=23.6

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcCCC
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      ..+.-+.|.||+|+|||++.+.|.....
T Consensus        22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~   49 (145)
T 3n70_A           22 ETDIAVWLYGAPGTGRMTGARYLHQFGR   49 (145)
T ss_dssp             TCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence            4556688999999999999999987543

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=96.07  E-value=0.003  Score=54.85  Aligned_cols=24  Identities=29%  Similarity=0.602  Sum_probs=21.0

Q ss_pred             cEEEEECCCCccHHHHHHHHHcCC
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .+++|.||+|||||||...|+..+
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~   26 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKF   26 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             cEEEEECcchhhHHHHHHHHHHHC
Confidence            478999999999999999998643

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=96.06  E-value=0.0017  Score=56.83  Aligned_cols=31  Identities=29%  Similarity=0.374  Sum_probs=25.5

Q ss_pred             EEEcCC--cEEEEECCCCccHHHHHHHHHcCCC
Q psy8250          19 GIAESG--SLLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        19 ~~i~~G--e~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      |.+.++  .+++++|++|+||||+...|++.+.
T Consensus        92 ~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~  124 (432)
T 2v3c_C           92 LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQ  124 (432)
T ss_dssp             CCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred             ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            444434  5899999999999999999998765

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.04  E-value=0.0036  Score=48.06  Aligned_cols=23  Identities=30%  Similarity=0.585  Sum_probs=20.4

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .+.|.||.|+|||||++.++..+
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            48999999999999999998654

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.01  E-value=0.0028  Score=53.35  Aligned_cols=27  Identities=30%  Similarity=0.444  Sum_probs=23.7

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      ..+..+.|.||.|+|||||++.++...
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            456789999999999999999998755

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=95.97  E-value=0.0039  Score=52.96  Aligned_cols=26  Identities=23%  Similarity=0.489  Sum_probs=22.3

Q ss_pred             CCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      ..-+++|+|+.|+|||||++.+++.+
T Consensus        78 ~~~~I~i~G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           78 NAHRVGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHH
Confidence            34589999999999999999998654

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=95.94  E-value=0.004  Score=51.33  Aligned_cols=25  Identities=24%  Similarity=0.355  Sum_probs=22.2

Q ss_pred             cEEEEECCCCccHHHHHHHHHcCCC
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      -.++++|.+|+|||||++.|.|...
T Consensus       121 ~~v~~vG~~nvGKSsliN~l~~~~~  145 (282)
T 1puj_A          121 IRALIIGIPNVGKSTLINRLAKKNI  145 (282)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred             ceEEEEecCCCchHHHHHHHhcCce
Confidence            3689999999999999999998653

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=95.92  E-value=0.0037  Score=54.11  Aligned_cols=41  Identities=12%  Similarity=0.007  Sum_probs=29.5

Q ss_pred             HHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEe
Q psy8250         111 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVP  155 (212)
Q Consensus       111 ~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llil  155 (212)
                      .+.++++.++....    ...+|..+..++.-...+...|-++++
T Consensus       181 ~~~~~l~~l~~~~~----~~~~~~~e~~~l~~~~~~~~kP~i~v~  221 (397)
T 1wxq_A          181 DVWEAMHKLNLPED----PTKWSQDDLLAFASEIRRVNKPMVIAA  221 (397)
T ss_dssp             HHHHHHHHTTCCSC----GGGCCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred             HHHHHHHHhccCCc----cccCCHHHHHHHHHhhhccCCCEEEEE
Confidence            45566666665432    347899998888777667779999998

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=95.89  E-value=0.0055  Score=50.91  Aligned_cols=24  Identities=42%  Similarity=0.657  Sum_probs=21.0

Q ss_pred             CcEEEEECCCCccHHHHHHHHHcC
Q psy8250          24 GSLLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        24 Ge~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      +-.++|+|+.|+|||||++.+.+.
T Consensus         3 ~~KI~lvG~~~vGKSSLi~~l~~~   26 (307)
T 3r7w_A            3 GSKLLLMGRSGSGKSSMRSIIFSN   26 (307)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            346899999999999999998775

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=95.89  E-value=0.0046  Score=50.78  Aligned_cols=27  Identities=22%  Similarity=0.340  Sum_probs=22.6

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++..+.|.||.|+|||||.+.++..+
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            345578999999999999999887655

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=95.87  E-value=0.0037  Score=54.56  Aligned_cols=23  Identities=30%  Similarity=0.528  Sum_probs=21.0

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|++|+|||||++.++|..
T Consensus         5 ~V~ivG~~nvGKStL~n~l~~~~   27 (436)
T 2hjg_A            5 VVAIVGRPNVGKSTIFNRIAGER   27 (436)
T ss_dssp             EEEEECSTTSSHHHHHHHHEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998853

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=95.85  E-value=0.0043  Score=53.13  Aligned_cols=25  Identities=24%  Similarity=0.446  Sum_probs=22.6

Q ss_pred             CCcEEEEECCCCccHHHHHHHHHcC
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      ++..++++|++|+|||||+|.|.|.
T Consensus       161 ~~~~i~~vG~~nvGKStliN~L~~~  185 (369)
T 3ec1_A          161 EGGDVYVVGCTNVGKSTFINRIIEE  185 (369)
T ss_dssp             TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccCcEEEEcCCCCchHHHHHHHHhh
Confidence            4567999999999999999999986

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=94.83  E-value=0.0015  Score=50.41  Aligned_cols=23  Identities=26%  Similarity=0.385  Sum_probs=19.8

Q ss_pred             cEEEEECCCCccHHHHHHHHHcC
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      =.++++|+.|+|||||++.+.+-
T Consensus        31 ~ki~v~G~~~~GKSsli~~l~~~   53 (204)
T 3th5_A           31 IKCVVVGDGAVGKTCLLISYTTN   53 (204)
Confidence            35899999999999999888753

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.80  E-value=0.0061  Score=50.80  Aligned_cols=26  Identities=31%  Similarity=0.487  Sum_probs=22.9

Q ss_pred             CcEEEEECCCCccHHHHHHHHHcCCC
Q psy8250          24 GSLLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        24 Ge~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      +..+.|.||.|+|||+|+++|+....
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~  177 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELS  177 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHH
Confidence            67899999999999999999987543

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=95.80  E-value=0.0049  Score=52.31  Aligned_cols=33  Identities=21%  Similarity=0.235  Sum_probs=26.3

Q ss_pred             eeeEEEEcCCcEEEEECCCCccHHHHHHHHHcC
Q psy8250          15 ESLSGIAESGSLLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        15 ~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      ..+.++++.--.++|+|..+||||||++.+++.
T Consensus       149 ~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~  181 (342)
T 1lnz_A          149 RYIVLELKVLADVGLVGFPSVGKSTLLSVVSSA  181 (342)
T ss_dssp             EEEEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred             hhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence            345556655556899999999999999999864

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=95.78  E-value=0.006  Score=48.94  Aligned_cols=24  Identities=33%  Similarity=0.533  Sum_probs=20.5

Q ss_pred             cEEEEECCCCccHHHHHHHHHcCC
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      -.+||+||.||||||+.+.|+..+
T Consensus         9 ~~~~~~G~pGsGKsT~a~~L~~~~   32 (230)
T 3gmt_A            9 MRLILLGAPGAGKGTQANFIKEKF   32 (230)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cceeeECCCCCCHHHHHHHHHHHh
Confidence            358999999999999999997533

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=95.78  E-value=0.0031  Score=53.44  Aligned_cols=23  Identities=30%  Similarity=0.479  Sum_probs=21.3

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|..|+|||||++.|.|.-
T Consensus        33 ~I~vvG~~~~GKSSLln~L~g~~   55 (353)
T 2x2e_A           33 QIAVVGGQSAGKSSVLENFVGRD   55 (353)
T ss_dssp             EEEEECBTTSSHHHHHHTTTTSC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999864

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=95.77  E-value=0.0031  Score=49.18  Aligned_cols=22  Identities=32%  Similarity=0.601  Sum_probs=18.9

Q ss_pred             EEEEECCCCccHHHHHHH-HHcC
Q psy8250          26 LLAIMGPSGAGKTTLLAC-ISQR   47 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~-i~g~   47 (212)
                      .++|+|+.|+|||||++. +.|.
T Consensus        17 ki~v~G~~~~GKSsli~~~~~~~   39 (221)
T 3gj0_A           17 KLVLVGDGGTGKTTFVKRHLTGE   39 (221)
T ss_dssp             EEEEEECTTSSHHHHHTTBHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            478999999999999998 5553

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=95.75  E-value=0.0057  Score=49.53  Aligned_cols=27  Identities=30%  Similarity=0.362  Sum_probs=22.5

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .+...+.|.||.|+|||||.+.++...
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~~   88 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEES   88 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence            344568899999999999999998753

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=95.73  E-value=0.0079  Score=50.43  Aligned_cols=37  Identities=19%  Similarity=0.154  Sum_probs=27.7

Q ss_pred             cCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHH
Q psy8250           8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACIS   45 (212)
Q Consensus         8 ~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~   45 (212)
                      |.....++..-..+ .|.-+.|.|+||+||||+...+.
T Consensus       132 la~~~~~H~~~v~~-~g~gvli~G~sG~GKStlal~l~  168 (312)
T 1knx_A          132 FATVAQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLI  168 (312)
T ss_dssp             TCCCEEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred             hhhcceeEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence            44455667754444 57789999999999999987764

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.72  E-value=0.006  Score=51.06  Aligned_cols=27  Identities=22%  Similarity=0.441  Sum_probs=23.5

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .+..-+.|.||.|+|||||.+.++...
T Consensus        43 ~~~~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           43 TPWRGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCccHHHHHHHHHHHc
Confidence            455678899999999999999999865

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.66  E-value=0.0063  Score=49.72  Aligned_cols=26  Identities=23%  Similarity=0.496  Sum_probs=22.4

Q ss_pred             CcEEEEECCCCccHHHHHHHHHcCCC
Q psy8250          24 GSLLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        24 Ge~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      +..+.|.||.|+||||+.+.++..+.
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~l~   75 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKLAN   75 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhC
Confidence            45678999999999999999997653

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=95.66  E-value=0.0068  Score=51.15  Aligned_cols=28  Identities=21%  Similarity=0.477  Sum_probs=24.9

Q ss_pred             EEEcCCcEEEEECCCCccHHHHHHHHHc
Q psy8250          19 GIAESGSLLAIMGPSGAGKTTLLACISQ   46 (212)
Q Consensus        19 ~~i~~Ge~~~iiGpnGaGKSTLl~~i~g   46 (212)
                      .-+.+|.++.|.||.|+|||||...++.
T Consensus       118 GGi~~gsviLI~GpPGsGKTtLAlqlA~  145 (331)
T 2vhj_A          118 GHRYASGMVIVTGKGNSGKTPLVHALGE  145 (331)
T ss_dssp             TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred             CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            4578899999999999999999999874

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=95.66  E-value=0.0048  Score=55.63  Aligned_cols=24  Identities=17%  Similarity=0.429  Sum_probs=21.9

Q ss_pred             cEEEEECCCCccHHHHHHHHHcCC
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      -.++|+|..|+|||||++.|.|.-
T Consensus        66 ~~V~vvG~~n~GKSTLIN~Llg~~   89 (550)
T 2qpt_A           66 PMVLVAGQYSTGKTSFIQYLLEQE   89 (550)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCc
Confidence            479999999999999999999864

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=95.66  E-value=0.012  Score=52.14  Aligned_cols=51  Identities=16%  Similarity=0.255  Sum_probs=39.0

Q ss_pred             CCCCCCCChHHHHHHHHHHH--HhhC---------------CCeEEecCCCC-CChhhHHHHHHHHHHHH
Q psy8250         126 NSVLNVLSGGERKRVALAVQ--TIIV---------------QSGFVPQHDLT-VDTLTVHEHMTLMARLK  177 (212)
Q Consensus       126 ~~~~~~LSgGqrqRv~lA~a--l~~~---------------p~llilDEPt~-lD~~~~~~~~~~l~~l~  177 (212)
                      ++..+.+||||+|-.-+|++  +++.               -.+++|||+ + +|....+..+++++++-
T Consensus       374 s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~lg  442 (483)
T 3euj_A          374 RAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERLD  442 (483)
T ss_dssp             ECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHTT
T ss_pred             ecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHcC
Confidence            34467899999996544443  3331               257999999 9 99999999999998874

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=95.65  E-value=0.00093  Score=51.40  Aligned_cols=23  Identities=35%  Similarity=0.556  Sum_probs=20.2

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|+.|+|||||++.+.+..
T Consensus        35 ki~vvG~~~~GKSsli~~l~~~~   57 (199)
T 3l0i_B           35 KLLLIGDSGVGKSCLLLRFADDT   57 (199)
T ss_dssp             EEEEECCTTSCCTTTTTSSBCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999987643

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=95.64  E-value=0.0042  Score=54.83  Aligned_cols=25  Identities=40%  Similarity=0.590  Sum_probs=22.0

Q ss_pred             CCcEEEEECCCCccHHHHHHHHHcC
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      +|=.++|+|+.|+|||||++.+++.
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~  247 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQS  247 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            4556999999999999999999884

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=95.61  E-value=0.0064  Score=51.50  Aligned_cols=26  Identities=31%  Similarity=0.617  Sum_probs=22.9

Q ss_pred             CCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      ++..+.|.||+|+||||+.++|+..+
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~   75 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLL   75 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence            45578899999999999999999865

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=95.59  E-value=0.0046  Score=52.90  Aligned_cols=25  Identities=20%  Similarity=0.422  Sum_probs=22.8

Q ss_pred             CCcEEEEECCCCccHHHHHHHHHcC
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      ++..++++|.+|+|||||+|.|.|.
T Consensus       159 ~~~~i~~vG~~nvGKStliN~L~~~  183 (368)
T 3h2y_A          159 GGKDVYVVGCTNVGKSTFINRMIKE  183 (368)
T ss_dssp             TTSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred             ccceEEEecCCCCChhHHHHHHHhh
Confidence            4677999999999999999999985

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.58  E-value=0.0067  Score=51.04  Aligned_cols=27  Identities=30%  Similarity=0.538  Sum_probs=23.8

Q ss_pred             CCcEEEEECCCCccHHHHHHHHHcCCC
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      +|..+.|.||.|+|||||.+.++..+.
T Consensus        69 ~~~~vLl~GppGtGKT~la~~la~~l~   95 (368)
T 3uk6_A           69 AGRAVLIAGQPGTGKTAIAMGMAQALG   95 (368)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            456899999999999999999997664

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=95.57  E-value=0.0073  Score=55.31  Aligned_cols=26  Identities=35%  Similarity=0.528  Sum_probs=23.1

Q ss_pred             CCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      +|.++.|.|.+||||||+.+.|+..+
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L   76 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYL   76 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence            46689999999999999999998755

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=95.56  E-value=0.0074  Score=52.09  Aligned_cols=24  Identities=29%  Similarity=0.418  Sum_probs=21.6

Q ss_pred             EEEEECCCCccHHHHHHHHHcCCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      .++++|+.|+|||||++.|+|...
T Consensus        10 ~I~vvG~~~~GKSTLi~~L~~~~~   33 (403)
T 3sjy_A           10 NIGVVGHVDHGKTTLVQAITGIWT   33 (403)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCccc
Confidence            589999999999999999998543

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.55  E-value=0.0072  Score=50.99  Aligned_cols=25  Identities=28%  Similarity=0.292  Sum_probs=22.1

Q ss_pred             CcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          24 GSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        24 Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      +..+.|.||.|+|||||++.++..+
T Consensus        45 ~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           45 KFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHH
Confidence            5579999999999999999998654

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=95.55  E-value=0.0083  Score=50.85  Aligned_cols=27  Identities=30%  Similarity=0.581  Sum_probs=23.3

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .+...+.|.||.|+|||||.+.|+...
T Consensus       115 ~~~~~vLl~GppGtGKT~la~aia~~~  141 (357)
T 3d8b_A          115 GPPKGILLFGPPGTGKTLIGKCIASQS  141 (357)
T ss_dssp             SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence            346678999999999999999998754

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.53  E-value=0.0088  Score=49.86  Aligned_cols=26  Identities=27%  Similarity=0.503  Sum_probs=22.5

Q ss_pred             CCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      +..-+.|.||.|+|||||.+.++...
T Consensus        50 ~~~~vLl~GppGtGKT~la~aia~~~   75 (322)
T 3eie_A           50 PTSGILLYGPPGTGKSYLAKAVATEA   75 (322)
T ss_dssp             CCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence            45568999999999999999998754

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=95.51  E-value=0.0052  Score=55.90  Aligned_cols=25  Identities=24%  Similarity=0.344  Sum_probs=22.1

Q ss_pred             CcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          24 GSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        24 Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      --+++|+|+.|+|||||++.|+|..
T Consensus        38 ~~~VaivG~pnvGKStLiN~L~g~~   62 (592)
T 1f5n_A           38 MVVVAIVGLYRTGKSYLMNKLAGKK   62 (592)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             CcEEEEECCCCCCHHHHHHhHcCCC
Confidence            3568999999999999999999864

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=95.48  E-value=0.0091  Score=49.40  Aligned_cols=25  Identities=28%  Similarity=0.417  Sum_probs=22.2

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHc
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQ   46 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g   46 (212)
                      ..|..+.|.||.|+|||||++.+..
T Consensus        29 ~~~~~v~i~G~~G~GKT~Ll~~~~~   53 (350)
T 2qen_A           29 ENYPLTLLLGIRRVGKSSLLRAFLN   53 (350)
T ss_dssp             HHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred             hcCCeEEEECCCcCCHHHHHHHHHH
Confidence            3468999999999999999999875

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=95.47  E-value=0.0084  Score=54.34  Aligned_cols=27  Identities=15%  Similarity=0.319  Sum_probs=23.4

Q ss_pred             CCcEEEEECCCCccHHHHHHHHHcCCC
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      .|.++.|.|++||||||+.+.|...+.
T Consensus       395 ~~~~I~l~GlsGSGKSTiA~~La~~L~  421 (573)
T 1m8p_A          395 QGFTIFLTGYMNSGKDAIARALQVTLN  421 (573)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             cceEEEeecCCCCCHHHHHHHHHHHhc
Confidence            467899999999999999999987553

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=95.47  E-value=0.0013  Score=54.84  Aligned_cols=41  Identities=17%  Similarity=0.211  Sum_probs=29.7

Q ss_pred             CCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCC
Q psy8250           9 GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus         9 ~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      |...+++.+...+..|.-+.|.||.|+|||||.+.++..+.
T Consensus        31 g~~~~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~~   71 (331)
T 2r44_A           31 GQKYMINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTMD   71 (331)
T ss_dssp             SCHHHHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred             CcHHHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            33334444444445577899999999999999999998654

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=95.47  E-value=0.0079  Score=49.61  Aligned_cols=25  Identities=24%  Similarity=0.396  Sum_probs=21.4

Q ss_pred             CcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          24 GSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        24 Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      -..+.|.||.|+|||+|.++|+..+
T Consensus        36 p~~lLl~GppGtGKT~la~aiA~~l   60 (293)
T 3t15_A           36 PLILGIWGGKGQGKSFQCELVFRKM   60 (293)
T ss_dssp             CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3467788999999999999999755

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=95.46  E-value=0.0098  Score=47.41  Aligned_cols=27  Identities=37%  Similarity=0.360  Sum_probs=21.3

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .+|.++.+.||.|+||||++.-++..+
T Consensus        10 ~~G~i~litG~mGsGKTT~ll~~~~r~   36 (223)
T 2b8t_A           10 KIGWIEFITGPMFAGKTAELIRRLHRL   36 (223)
T ss_dssp             -CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence            579999999999999999776555433

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=95.41  E-value=0.0021  Score=54.16  Aligned_cols=28  Identities=21%  Similarity=0.408  Sum_probs=22.7

Q ss_pred             EcCCc---EEEEECCCCccHHHHHHHHHcCC
Q psy8250          21 AESGS---LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        21 i~~Ge---~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      +..|.   .+.|.||.|+||||+++.++..+
T Consensus        32 l~~~~~~~~~ll~G~~G~GKT~la~~la~~l   62 (373)
T 1jr3_A           32 LSLGRIHHAYLFSGTRGVGKTSIARLLAKGL   62 (373)
T ss_dssp             HHHTCCCSEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             HHhCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            44454   48899999999999999998654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	212
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	3e-19
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	1e-16
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	3e-16
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	2e-15
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	3e-15
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	4e-15
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	2e-14
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	4e-14
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	4e-14
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	6e-14
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	2e-13
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	3e-13
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	4e-13
d2onka1	240	c.37.1.12 (A:1-240) Molybdate/tungstate import ATP	4e-13
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	4e-13
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	5e-13
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	5e-13
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	2e-12
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	3e-12
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	7e-11
d1ye8a1	178	c.37.1.11 (A:1-178) Hypothetical kinase-like prote	3e-04
d1znwa1	182	c.37.1.1 (A:20-201) Guanylate kinase {Mycobacteriu	0.001
d1s96a_	205	c.37.1.1 (A:) Guanylate kinase {Escherichia coli [	0.001
d1tf7a2	242	c.37.1.11 (A:256-497) Circadian clock protein KaiC	0.004

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 80.6 bits (199), Expect = 3e-19
 Identities = 39/178 (21%), Positives = 72/178 (40%), Gaps = 12/178 (6%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV-EKNLMVKVSGFVPQHDL 80
           + G  L ++GPSG GKTT L  I+   +   +G+I     +V       +    V Q   
Sbjct: 30  KDGEFLVLLGPSGCGKTTTLRMIAGLEEPT-EGRIYFGDRDVTYLPPKDRNISMVFQSYA 88

Query: 81  TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRV 140
               +TV+E++    ++   +     E  + V    + L + +  N     LSGG+R+RV
Sbjct: 89  VWPHMTVYENIAFPLKI---KKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRV 145

Query: 141 ALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDRNL------HHVERARTV 191
           A+A   ++     +    L+ +D          + +L+    +      H    A T+
Sbjct: 146 AVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTM 203

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score = 73.5 bits (180), Expect = 1e-16
 Identities = 34/141 (24%), Positives = 60/141 (42%), Gaps = 12/141 (8%)

Query: 8   FGDTNYKESLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE 64
            G    KE L GI    E G +  ++GP+GAGKTT L  IS  I+    G + + G  V 
Sbjct: 12  IGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS-SGIVTVFGKNVV 67

Query: 65  KNL--MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL 122
           +    + K+  ++P+       +   E++  +A           E    V+   +  GL 
Sbjct: 68  EEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGF---YASSSSEIEEMVERATEIAGLG 124

Query: 123 KCKNSVLNVLSGGERKRVALA 143
           +     ++  S G  +++ +A
Sbjct: 125 EKIKDRVSTYSKGMVRKLLIA 145

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score = 72.6 bits (178), Expect = 3e-16
 Identities = 44/183 (24%), Positives = 81/183 (44%), Gaps = 17/183 (9%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV------EKNLMVKVSGFV 75
            +G +  ++G SGAGK+TL+ C++   +   +G +L++G E+      E     +  G +
Sbjct: 29  PAGQIYGVIGASGAGKSTLIRCVNLLERPT-EGSVLVDGQELTTLSESELTKARRQIGMI 87

Query: 76  PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGG 135
            QH   + + TV  ++ L   L    N    E  R V  LL  +GL    +S  + LSGG
Sbjct: 88  FQHFNLLSSRTVFGNVALPLEL---DNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGG 144

Query: 136 ERKRVALAVQTIIVQSGFV-PQHDLTVDTLTVHEHMTLMARLKMDRNL------HHVERA 188
           +++RVA+A          +  +    +D  T    + L+  +     L      H ++  
Sbjct: 145 QKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVV 204

Query: 189 RTV 191
           + +
Sbjct: 205 KRI 207

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 69.2 bits (169), Expect = 2e-15
 Identities = 36/162 (22%), Positives = 76/162 (46%), Gaps = 10/162 (6%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLT 81
           E G+++   GP+G GKTTLL  IS  ++    G+I+ NG+ + K  +     F+P+  + 
Sbjct: 25  EKGNVVNFHGPNGIGKTTLLKTISTYLKPL-KGEIIYNGVPITK--VKGKIFFLPEEIIV 81

Query: 82  VDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVA 141
              ++V +++  +A L   +          +   L+ + +L  K  +   LS G  +RV 
Sbjct: 82  PRKISVEDYLKAVASLYGVK-----VNKNEIMDALESVEVLDLKKKL-GELSQGTIRRVQ 135

Query: 142 LAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDRNL 182
           LA   ++    +V    +  +D  + H+ +  +  +  ++ +
Sbjct: 136 LASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGI 177

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 70.0 bits (171), Expect = 3e-15
 Identities = 31/172 (18%), Positives = 67/172 (38%), Gaps = 18/172 (10%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKV----SGFVPQ 77
             G +  I+GP+G+GK+TL+  I+  ++ D +G++     ++      ++         Q
Sbjct: 28  NKGDVTLIIGPNGSGKSTLINVITGFLKAD-EGRVYFENKDITNKEPAELYHYGIVRTFQ 86

Query: 78  HDLTVDTLTVHEHMTLMARLKMDRNLHHV----------ERARTVDALLKELGLLKCKNS 127
               +  +TV E++ +      +  L+ +          E       +L+ L L    + 
Sbjct: 87  TPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDR 146

Query: 128 VLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT--VDTLTVHEHMTLMARLK 177
               LSGG+ K V +  + ++     +   +    V     H+    +  LK
Sbjct: 147 KAGELSGGQMKLVEIG-RALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 197

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 69.1 bits (169), Expect = 4e-15
 Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 9/130 (6%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-------NLMVKVSGF 74
           + G  ++IMGPSG+GK+T+L  I    +   +G++ ++ ++           +     GF
Sbjct: 29  KEGEFVSIMGPSGSGKSTMLNIIGCLDKPT-EGEVYIDNIKTNDLDDDELTKIRRDKIGF 87

Query: 75  VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLS 133
           V Q    +  LT  E++ L    K    +   ER +     LK   L  +  N   N LS
Sbjct: 88  VFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLS 147

Query: 134 GGERKRVALA 143
           GG+++RVA+A
Sbjct: 148 GGQQQRVAIA 157

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score = 67.3 bits (164), Expect = 2e-14
 Identities = 39/170 (22%), Positives = 63/170 (37%), Gaps = 21/170 (12%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQH 78
            +G +L ++GP+GAGK+TLLA ++    G   G I   G  +E      +     ++ Q 
Sbjct: 23  RAGEILHLVGPNGAGKSTLLARMAGMTSG--KGSIQFAGQPLEAWSATKLALHRAYLSQQ 80

Query: 79  DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERK 138
                   V  ++TL    K         R   ++ +   L L        N LSGGE +
Sbjct: 81  QTPPFATPVWHYLTLHQHDK--------TRTELLNDVAGALALDDKLGRSTNQLSGGEWQ 132

Query: 139 RVALAVQTIIVQSGFVPQHDLTV--------DTLTVHEHMTLMARLKMDR 180
           RV LA   + +     P   L +        D         +++ L    
Sbjct: 133 RVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQG 182

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 66.5 bits (162), Expect = 4e-14
 Identities = 32/137 (23%), Positives = 58/137 (42%), Gaps = 5/137 (3%)

Query: 8   FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV-EKN 66
           +G+    + ++     G  +  +GPSG GK+TLL  I+        G + +    + +  
Sbjct: 10  WGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT-SGDLFIGEKRMNDTP 68

Query: 67  LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKN 126
              +  G V Q       L+V E+M+   +L            + V+ + + L L    +
Sbjct: 69  PAERGVGMVFQSYALYPHLSVAENMSFGLKL---AGAKKEVINQRVNQVAEVLQLAHLLD 125

Query: 127 SVLNVLSGGERKRVALA 143
                LSGG+R+RVA+ 
Sbjct: 126 RKPKALSGGQRQRVAIG 142

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score = 66.2 bits (161), Expect = 4e-14
 Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 15/178 (8%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVK-VSGFVPQHDL 80
           ESG    I+GP+GAGKT  L  I+     D  G+ILL+G +V      K    FV Q+  
Sbjct: 24  ESGEYFVILGPTGAGKTLFLELIAGFHVPD-SGRILLDGKDVTDLSPEKHDIAFVYQNYS 82

Query: 81  TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRV 140
               + V +++           +  ++  + V    ++L +    +     LSGGE++RV
Sbjct: 83  LFPHMNVKKNLE------FGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRV 136

Query: 141 ALAVQTIIVQSGFVP-QHDLTVDTLTVHEHMTLMARLKMDRNL------HHVERARTV 191
           ALA   +      +  +    +D  T      +++ L     L      H    AR +
Sbjct: 137 ALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIM 194

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score = 66.1 bits (161), Expect = 6e-14
 Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 11/143 (7%)

Query: 8   FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV---- 63
           FG+      +S   + G  + ++GPSG GKTT L  I+   +    GQI +    V    
Sbjct: 13  FGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS-RGQIYIGDKLVADPE 71

Query: 64  ---EKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELG 120
                    +    V Q       +TV++++    +L   R +   E  + V  + + LG
Sbjct: 72  KGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKL---RKVPRQEIDQRVREVAELLG 128

Query: 121 LLKCKNSVLNVLSGGERKRVALA 143
           L +  N     LSGG+R+RVAL 
Sbjct: 129 LTELLNRKPRELSGGQRQRVALG 151

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.9 bits (158), Expect = 2e-13
 Identities = 34/136 (25%), Positives = 53/136 (38%), Gaps = 16/136 (11%)

Query: 12  NYKESLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLM 68
                L  I    E G +LAI G +G+GKT+LL  I   ++   +G I  +G        
Sbjct: 47  VGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS-EGIIKHSG-------- 97

Query: 69  VKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLK-ELGLLKCKNS 127
            +V  F  Q    +   T+ E++         R    V+  +    + K           
Sbjct: 98  -RV-SFCSQFSWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGE 154

Query: 128 VLNVLSGGERKRVALA 143
               LSGG+R R++LA
Sbjct: 155 GGVTLSGGQRARISLA 170

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 64.3 bits (156), Expect = 3e-13
 Identities = 38/171 (22%), Positives = 65/171 (38%), Gaps = 11/171 (6%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN------LMVKVSGFV 75
           E+G    I+GPSGAGKTT +  I+        G++  +   V  N         +  G V
Sbjct: 29  ENGERFGILGPSGAGKTTFMRIIAGLDVPS-TGELYFDDRLVASNGKLIVPPEDRKIGMV 87

Query: 76  PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGG 135
            Q       LT  E++           +   E  + V+ + K L +    N     LSG 
Sbjct: 88  FQTWALYPNLTAFENIAFPLTNMK---MSKEEIRKRVEEVAKILDIHHVLNHFPRELSGA 144

Query: 136 ERKRVALAVQTIIVQSGFVP-QHDLTVDTLTVHEHMTLMARLKMDRNLHHV 185
           +++RVALA   +   S  +  +    +D         L+  ++    +  +
Sbjct: 145 QQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLL 195

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score = 64.1 bits (156), Expect = 4e-13
 Identities = 32/139 (23%), Positives = 60/139 (43%), Gaps = 20/139 (14%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS--------- 72
            +G +++I+G SG+GK+T L CI+  ++   +G I++NG  +                  
Sbjct: 26  RAGDVISIIGSSGSGKSTFLRCIN-FLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQL 84

Query: 73  -------GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KC 124
                    V QH      +TV E+  +M        L   +        L ++G+  + 
Sbjct: 85  RLLRTRLTMVFQHFNLWSHMTVLEN--VMEAPIQVLGLSKHDARERALKYLAKVGIDERA 142

Query: 125 KNSVLNVLSGGERKRVALA 143
           +      LSGG+++RV++A
Sbjct: 143 QGKYPVHLSGGQQQRVSIA 161

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 63.9 bits (155), Expect = 4e-13
 Identities = 47/176 (26%), Positives = 80/176 (45%), Gaps = 14/176 (7%)

Query: 24  GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS-GFVPQHDLTV 82
                ++GP+GAGK+  L  I+  ++ D  G++ LNG ++      +   GFVPQ     
Sbjct: 24  RDYCVLLGPTGAGKSVFLELIAGIVKPD-RGEVRLNGADITPLPPERRGIGFVPQDYALF 82

Query: 83  DTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVAL 142
             L+V+ ++         RN+  VER R V  + ++LG+    +     LSGGER+RVAL
Sbjct: 83  PHLSVYRNIAY-----GLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVAL 137

Query: 143 AVQTIIVQSGFVP-QHDLTVDTLTVHEHMTLMARLKMDRN------LHHVERARTV 191
           A   +I     +  +    VD  T    M  +  ++ + +       H +  A  +
Sbjct: 138 ARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAML 193

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score = 63.8 bits (155), Expect = 4e-13
 Identities = 39/181 (21%), Positives = 82/181 (45%), Gaps = 12/181 (6%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQH 78
           + G ++ I+G SG+GK+TL   I QR     +GQ+L++G ++     N + +  G V Q 
Sbjct: 27  KQGEVIGIVGRSGSGKSTLTKLI-QRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQD 85

Query: 79  DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDAL-LKELGLLKCKNSVLNVLSGGER 137
           ++ ++   +         + +++ ++  + A   D +     G           LSGG+R
Sbjct: 86  NVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQR 145

Query: 138 KRVALAVQTIIVQSGFVPQHDLT--VDTLTVHEHMTLMARLKMDRNL----HHVERARTV 191
           +R+A+A + ++     +   + T  +D  + H  M  M ++   R +    H +   +  
Sbjct: 146 QRIAIA-RALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNA 204

Query: 192 D 192
           D
Sbjct: 205 D 205

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score = 63.7 bits (155), Expect = 5e-13
 Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 7/127 (5%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQH 78
           E G  +A +G SG GK+TL+  I  R      GQIL++G  ++      +    G V Q 
Sbjct: 42  EKGETVAFVGMSGGGKSTLINLIP-RFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQD 100

Query: 79  DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKEL--GLLKCKNSVLNVLSGGE 136
           ++ + + TV E++ L      D  +    +       +  L  G           LSGG+
Sbjct: 101 NI-LFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQ 159

Query: 137 RKRVALA 143
           ++R+++A
Sbjct: 160 KQRLSIA 166

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score = 63.4 bits (154), Expect = 5e-13
 Identities = 33/163 (20%), Positives = 76/163 (46%), Gaps = 13/163 (7%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN----LMVKVSGFVPQ 77
             G ++ ++G +GAGKTT L+ I+  ++    G+I+ NG ++       +       VP+
Sbjct: 30  PRGQIVTLIGANGAGKTTTLSAIAGLVRAQ-KGKIIFNGQDITNKPAHVINRMGIALVPE 88

Query: 78  HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCK-NSVLNVLSGGE 136
                  LTV+E++ + A  + D+        R ++ +      LK +   +   LSGGE
Sbjct: 89  GRRIFPELTVYENLMMGAYNRKDKE----GIKRDLEWIFSLFPRLKERLKQLGGTLSGGE 144

Query: 137 RKRVALAVQTIIVQSGFVPQHDLT--VDTLTVHEHMTLMARLK 177
           ++ +A+  + ++ +   +   + +  +  + V E   ++ ++ 
Sbjct: 145 QQMLAIG-RALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKIN 186

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (150), Expect = 2e-12
 Identities = 38/186 (20%), Positives = 73/186 (39%), Gaps = 19/186 (10%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV---EKNLMVKVSGFVPQH 78
             G + A++GP+G+GK+T+ A +   +     GQ+LL+G  +   E   + +    V Q 
Sbjct: 38  RPGEVTALVGPNGSGKSTVAALLQ-NLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQE 96

Query: 79  DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV----LSG 134
                  ++ E++      K          A    A     GL +  ++ ++     LSG
Sbjct: 97  PQVFG-RSLQENIAYGLTQKPTME-EITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSG 154

Query: 135 GERKRVALAVQTIIVQSGFVPQHDLT--VDTLTVHEHMTLMARLKMDRNL------HHVE 186
           G+R+ VAL  + +I +   +   D T  +D  +  +   L+       +        H+ 
Sbjct: 155 GQRQAVAL-ARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS 213

Query: 187 RARTVD 192
                D
Sbjct: 214 LVEQAD 219

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 61.4 bits (149), Expect = 3e-12
 Identities = 35/182 (19%), Positives = 74/182 (40%), Gaps = 13/182 (7%)

Query: 22  ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKV---SGFVPQH 78
            +G  +A++G SG+GK+T+ + I  R     +G IL++G ++ +  +  +      V Q+
Sbjct: 39  PAGKTVALVGRSGSGKSTIASLI-TRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQN 97

Query: 79  DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKEL--GLLKCKNSVLNVLSGGE 136
               +    +              +    R       + ++  GL         +LSGG+
Sbjct: 98  VHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQ 157

Query: 137 RKRVALAVQTIIVQSGFVPQHDLT--VDTLTVHEHMTLMARLKMDRNL----HHVERART 190
           R+R+A+A + ++  S  +   + T  +DT +       +  L+ +R      H +     
Sbjct: 158 RQRIAIA-RALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQ 216

Query: 191 VD 192
            D
Sbjct: 217 AD 218

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score = 57.6 bits (139), Expect = 7e-11
 Identities = 39/202 (19%), Positives = 80/202 (39%), Gaps = 34/202 (16%)

Query: 14  KESLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVK 70
           ++ L  I   A+  S++A  GPSG GK+T+ + + +  Q    G+I ++G  ++      
Sbjct: 15  EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT-AGEITIDGQPIDN----- 68

Query: 71  VSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLN 130
               +   +       V +   +MA    +   + +E   T + L + L L   ++ V N
Sbjct: 69  ----ISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVEN 124

Query: 131 V--------------LSGGERKRVALAVQTIIVQSGFVPQHDLT--VDTLTVHEHMTLMA 174
           +              +SGG+R+R+A+A +  +     +   + T  +D+ +       + 
Sbjct: 125 MPDQLNTEVGERGVKISGGQRQRLAIA-RAFLRNPKILMLDEATASLDSESESMVQKALD 183

Query: 175 RLKMDRNL----HHVERARTVD 192
            L   R      H +      D
Sbjct: 184 SLMKGRTTLVIAHRLSTIVDAD 205

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

 Score = 37.7 bits (86), Expect = 3e-04
 Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 1/39 (2%)

Query: 27 LAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK 65
          + I G  G GKTTL+  I +R+            +   +
Sbjct: 3  IIITGEPGVGKTTLVKKIVERLGKR-AIGFWTEEVRDPE 40

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 36.1 bits (82), Expect = 0.001
 Identities = 9/24 (37%), Positives = 17/24 (70%)

Query: 24 GSLLAIMGPSGAGKTTLLACISQR 47
          G ++ + GPS  GK+T++ C+ +R
Sbjct: 2  GRVVVLSGPSAVGKSTVVRCLRER 25

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} Length = 205

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

 Score = 36.0 bits (82), Expect = 0.001
 Identities = 9/24 (37%), Positives = 16/24 (66%)

Query: 24 GSLLAIMGPSGAGKTTLLACISQR 47
          G+L  +  PSGAGK++L+  + + 
Sbjct: 2  GTLYIVSAPSGAGKSSLIQALLKT 25

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

 Score = 34.9 bits (79), Expect = 0.004
 Identities = 27/195 (13%), Positives = 63/195 (32%), Gaps = 16/195 (8%)

Query: 17  LSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVP 76
             G     S++   G +G GKT L++   +    + +  IL    E    L+        
Sbjct: 19  CGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNA----- 73

Query: 77  QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGE 136
            +   +D   +     L        +    +  + + + + +    +     L+ L+ G 
Sbjct: 74  -YSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGV 132

Query: 137 RKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHH-------VERAR 189
                   Q +I  +G+  Q ++T    T      + A    D ++         ++   
Sbjct: 133 --SNNAFRQFVIGVTGYAKQEEITG-LFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 189

Query: 190 TVDALLKELGLLKCR 204
               + + + + K R
Sbjct: 190 IRGEMSRAINVFKMR 204

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	212
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	100.0
d1g2912	240	Maltose transport protein MalK, N-terminal domain	100.0
d2awna2	232	Maltose transport protein MalK, N-terminal domain	100.0
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	100.0
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	100.0
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	100.0
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	100.0
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	100.0
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	100.0
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	100.0
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	100.0
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	100.0
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	100.0
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	100.0
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	100.0
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	100.0
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	100.0
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.8
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	99.63
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.55
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	98.93
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	98.77
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	98.4
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	98.23
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	98.23
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	98.02
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	98.01
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.96
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.94
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	97.87
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.84
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.81
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.81
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.79
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.78
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.75
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.74
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.68
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.66
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.64
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.64
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.6
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.59
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.55
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.53
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.52
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.51
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.5
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.5
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.47
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	97.43
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	97.43
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.43
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	97.4
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.4
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	97.4
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	97.4
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	97.36
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	97.33
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	97.32
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.32
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	97.31
d1nrjb_	209	Signal recognition particle receptor beta-subunit	97.31
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.28
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	97.27
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.27
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.26
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	97.26
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.25
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.24
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.23
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.23
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	97.2
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.19
d1okkd2	207	GTPase domain of the signal recognition particle r	97.16
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.16
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.16
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.15
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.11
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.1
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.07
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	97.06
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.05
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.05
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.04
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.04
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.04
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.02
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.01
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	96.99
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.99
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.96
d2fh5b1	207	Signal recognition particle receptor beta-subunit	96.96
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.96
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.95
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.94
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.94
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	96.92
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.9
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.89
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.88
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.87
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.86
d2qy9a2	211	GTPase domain of the signal recognition particle r	96.85
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.83
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.81
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.81
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.79
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.78
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	96.78
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	96.75
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.74
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.73
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.73
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.71
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.71
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.71
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	96.7
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.68
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	96.67
d1vmaa2	213	GTPase domain of the signal recognition particle r	96.67
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.66
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.63
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	96.63
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.61
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	96.61
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.61
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	96.61
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	96.59
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.59
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.57
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	96.57
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	96.55
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	96.53
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.53
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.52
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	96.5
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.5
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.48
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	96.47
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	96.47
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	96.46
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.46
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.44
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.44
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	96.44
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	96.41
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	96.41
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	96.37
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.37
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	96.36
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	96.36
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	96.35
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	96.35
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	96.34
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.33
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.32
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.3
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	96.28
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	96.27
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	96.25
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	96.25
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.22
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	96.21
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	96.21
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.2
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.19
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.17
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	96.16
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.16
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.15
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.14
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	96.11
d1xpua3	289	Transcription termination factor Rho, ATPase domai	96.11
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	96.08
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	96.08
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.07
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	96.05
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	96.04
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	96.03
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.01
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	96.0
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	96.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	95.99
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	95.98
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	95.97
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.95
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.95
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	95.93
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	95.92
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	95.91
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	95.89
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	95.88
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	95.85
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	95.85
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.82
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.8
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	95.79
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.78
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	95.77
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.71
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	95.71
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	95.69
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	95.63
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	95.61
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.6
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	95.58
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	95.58
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	95.54
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	95.47
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.43
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	95.16
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.09
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	95.09
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	95.01
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	94.99
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	94.98
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	94.93
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	94.85
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	94.73
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	94.72
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	94.64
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	94.52
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	94.38
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	94.33
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	93.7
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	93.7
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	93.7
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.69
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	93.67
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	93.61
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	93.55
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	93.38
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	93.29
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	93.28
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	92.88
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	92.84
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	92.83
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	92.73
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	92.65
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	92.62
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	92.44
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	92.37
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	92.18
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	91.86
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	91.77
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	91.36
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	91.35
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	91.16
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	91.05
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	90.63
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	90.39
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	90.35
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	90.27
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	90.25
d1tuea_	205	Replication protein E1 helicase domain {Human papi	89.95
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	89.76
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	89.74
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	89.43
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	89.43
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	89.07
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	88.77
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	88.31
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	87.98
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	87.49
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	87.37
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	86.29
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	84.77
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	82.87

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=1e-63  Score=406.35  Aligned_cols=207  Identities=23%  Similarity=0.269  Sum_probs=182.9

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHD   79 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~   79 (212)
                      +++++|+||+..+|+||||+|++||+++|+||||||||||+|+|+|++.| ++|+|+++|+++... ..++.+|||||++
T Consensus         9 v~nlsk~yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p-~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~   87 (239)
T d1v43a3           9 LENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP-TEGRIYFGDRDVTYLPPKDRNISMVFQSY   87 (239)
T ss_dssp             EEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC-SEEEEEETTEECTTSCGGGGTEEEEEC--
T ss_pred             EEEEEEEECCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCC-CCCEEEEcceecccCCcccceEEEEeech
Confidence            46899999999999999999999999999999999999999999999999 699999999999653 3456799999999


Q ss_pred             CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCC
Q psy8250          80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDL  159 (212)
Q Consensus        80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt  159 (212)
                      .+|+.+||+||+.++...+   +.++.+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus        88 ~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPt  164 (239)
T d1v43a3          88 AVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPL  164 (239)
T ss_dssp             ----CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTT
T ss_pred             hhcccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCceeecCCc
Confidence            9999999999999876554   4567888899999999999999999999999999999999999999999999999999


Q ss_pred             C-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHHH---HHHHhcCeeecCCchhhhc
Q psy8250         160 T-VDTLTVHEHMTLMARLKMDR------NLHHVERARTVD---ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       160 ~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~~  211 (212)
                      + |||.++.+++++|++++++.      +|||++++...+   .+|++|+++++|+++++.+
T Consensus       165 s~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~  226 (239)
T d1v43a3         165 SNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL  226 (239)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            9 99999999999999997663      379999998753   4899999999999999864

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=100.00  E-value=1.8e-62  Score=399.54  Aligned_cols=207  Identities=24%  Similarity=0.282  Sum_probs=189.2

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-------cccceEE
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-------LMVKVSG   73 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-------~~~~~i~   73 (212)
                      ++|++|.||+..+|+||||+|++||++||+||||||||||+|+|+|++.| ++|+|+++|+++...       ..++.+|
T Consensus         6 v~nl~k~yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p-~sG~I~~~g~~i~~~~~~~~~~~~~r~ig   84 (240)
T d1g2912           6 LVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP-SRGQIYIGDKLVADPEKGIFVPPKDRDIA   84 (240)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC-SEEEEEETTEEEEEGGGTEECCGGGSSEE
T ss_pred             EEeEEEEECCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCC-CCCEEEECCEEecccchhhhcccccccce
Confidence            47899999999999999999999999999999999999999999999999 699999999988431       1356799


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeE
Q psy8250          74 FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGF  153 (212)
Q Consensus        74 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~ll  153 (212)
                      ||||++.+++.+||+||+.++...+   +.+..+.++++.++++.+++++..++++.+|||||||||+|||||+.+|++|
T Consensus        85 ~v~Q~~~L~~~ltV~eni~~~~~~~---~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~iL  161 (240)
T d1g2912          85 MVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVF  161 (240)
T ss_dssp             EECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEE
T ss_pred             ecccchhhcchhhhhHhhhhhHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            9999999999999999999988765   3567788889999999999999999999999999999999999999999999


Q ss_pred             EecCCCC-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHHH---HHHHhcCeeecCCchhhhc
Q psy8250         154 VPQHDLT-VDTLTVHEHMTLMARLKMDR------NLHHVERARTVD---ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       154 ilDEPt~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~~  211 (212)
                      ||||||+ ||+.++..++++|++++++.      +|||++++...+   .+|++|++++.|+++|+.+
T Consensus       162 llDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~  229 (240)
T d1g2912         162 LMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD  229 (240)
T ss_dssp             EEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             EecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            9999999 99999999999999997763      379999998753   4899999999999999854

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.4e-63  Score=401.99  Aligned_cols=207  Identities=22%  Similarity=0.266  Sum_probs=151.0

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHD   79 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~   79 (212)
                      ++|++|+|++..+|+||||+|++||++||+||||||||||+|+|+|++.| ++|+|+++|+++... ..++.+|||||++
T Consensus         3 v~nv~k~yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p-~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~   81 (232)
T d2awna2           3 LQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI-TSGDLFIGEKRMNDTPPAERGVGMVFQSY   81 (232)
T ss_dssp             EEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC-SEEEEEESSSCCTTSCGGGTCEEEECSSC
T ss_pred             EEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCC-CCCEEEECCEECCCCchhhceeeeecccc
Confidence            47899999999999999999999999999999999999999999999999 699999999998653 3457799999999


Q ss_pred             CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCC
Q psy8250          80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDL  159 (212)
Q Consensus        80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt  159 (212)
                      .+++.+||+||+.++...+.   .++++.++++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus        82 ~l~~~~tv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPt  158 (232)
T d2awna2          82 ALYPHLSVAENMSFGLKLAG---AKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL  158 (232)
T ss_dssp             CC------------------------CHHHHHHHHHHHHC---------------------CHHHHHHTCCSEEEEESTT
T ss_pred             ccccchhHHHHHHHHHHHcC---CCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence            99999999999999876542   345567788999999999999999999999999999999999999999999999999


Q ss_pred             C-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250         160 T-VDTLTVHEHMTLMARLKMDR------NLHHVERARTV-D--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       160 ~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      + ||+.++.+++++|++++++.      +|||++++... +  .+|++|+++++|+++++.+
T Consensus       159 s~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~  220 (232)
T d2awna2         159 SNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH  220 (232)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence            9 99999999999999997653      37999999875 3  4899999999999999854

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=1.5e-62  Score=399.95  Aligned_cols=207  Identities=21%  Similarity=0.240  Sum_probs=187.2

Q ss_pred             Cccccccc--CCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc------ccccceE
Q psy8250           1 METFHPLF--GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK------NLMVKVS   72 (212)
Q Consensus         1 ~~~l~~~~--~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~------~~~~~~i   72 (212)
                      ++|++|.|  |...+|+||||+|++||++||+||||||||||+++|+|+++| ++|+|+++|+++..      ...++.+
T Consensus         6 v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p-~~G~I~~~g~~i~~~~~~~~~~~rr~i   84 (242)
T d1oxxk2           6 VKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP-STGELYFDDRLVASNGKLIVPPEDRKI   84 (242)
T ss_dssp             EEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCC-SEEEEEETTEEEEETTEESSCGGGSCE
T ss_pred             EEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCC-CCceEEECCEEeecCchhhcchhhccc
Confidence            47899999  556799999999999999999999999999999999999999 69999999999843      1235679


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCe
Q psy8250          73 GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSG  152 (212)
Q Consensus        73 ~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~l  152 (212)
                      |||||++.+||.+||+||+.++...+   +.++.+.++++.++++.+|+++..++++.+|||||||||+|||||+.+|++
T Consensus        85 g~vfQ~~~L~p~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~l  161 (242)
T d1oxxk2          85 GMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSL  161 (242)
T ss_dssp             EEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred             eEEeccccccccccHHHHhhhhhHhh---cCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhhcccc
Confidence            99999999999999999999976543   456778889999999999999999999999999999999999999999999


Q ss_pred             EEecCCCC-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHHH---HHHHhcCeeecCCchhhhc
Q psy8250         153 FVPQHDLT-VDTLTVHEHMTLMARLKMDR------NLHHVERARTVD---ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       153 lilDEPt~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~~  211 (212)
                      |||||||+ ||+.++.+++++|++++++.      +|||++++...+   .+|++|+++++|+|+++.+
T Consensus       162 lllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~  230 (242)
T d1oxxk2         162 LLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD  230 (242)
T ss_dssp             EEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             eeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            99999999 99999999999999997763      379999997753   4899999999999999853

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=100.00  E-value=8.6e-62  Score=392.72  Aligned_cols=203  Identities=25%  Similarity=0.308  Sum_probs=183.3

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHD   79 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~   79 (212)
                      +++++|+|++ .+|+||||+|++||+++|+||||||||||+|+|+|++.| ++|+|+++|+++... ..++.+|||||++
T Consensus         4 v~nlsk~y~~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p-~sG~I~~~G~~i~~~~~~~r~ig~v~Q~~   81 (229)
T d3d31a2           4 IESLSRKWKN-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP-DSGRILLDGKDVTDLSPEKHDIAFVYQNY   81 (229)
T ss_dssp             EEEEEEECSS-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCC-SEEEEEETTEECTTSCHHHHTCEEECTTC
T ss_pred             EEEEEEEeCC-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCC-CCCEEEEccEeccccchhHhcceeecccc
Confidence            4789999987 489999999999999999999999999999999999999 699999999999653 3456799999999


Q ss_pred             CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCC
Q psy8250          80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDL  159 (212)
Q Consensus        80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt  159 (212)
                      .+|+.+||+||+.++...+...      ..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus        82 ~l~~~~tV~enl~~~~~~~~~~------~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPt  155 (229)
T d3d31a2          82 SLFPHMNVKKNLEFGMRMKKIK------DPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPL  155 (229)
T ss_dssp             CCCTTSCHHHHHHHHHHHHCCC------CHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSS
T ss_pred             ccCccccHHHHHHHHHhhcccc------HHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCceeecCCC
Confidence            9999999999999988765322      2356889999999999999999999999999999999999999999999999


Q ss_pred             C-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHHH---HHHHhcCeeecCCchhhhc
Q psy8250         160 T-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTVD---ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       160 ~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~~  211 (212)
                      + ||+.++.+++++|++++++ +     +|||++++...+   .+|++|+++++|+++++.+
T Consensus       156 s~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~  217 (229)
T d3d31a2         156 SALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFE  217 (229)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHS
T ss_pred             cCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            9 9999999999999999765 3     379999998753   4899999999999999864

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.9e-62  Score=396.06  Aligned_cols=207  Identities=23%  Similarity=0.324  Sum_probs=186.5

Q ss_pred             CcccccccCCc----ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc------cccc
Q psy8250           1 METFHPLFGDT----NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN------LMVK   70 (212)
Q Consensus         1 ~~~l~~~~~~~----~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~------~~~~   70 (212)
                      ++|++|.|+..    .+|+||||+|++||++||+||||||||||+++|+|+..| ++|+|.++|+++...      ..++
T Consensus         4 v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p-~sG~I~~~g~~i~~~~~~~~~~~rr   82 (240)
T d3dhwc1           4 LSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP-TEGSVLVDGQELTTLSESELTKARR   82 (240)
T ss_dssp             EEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCC-SEEEEEETTEEECTTCHHHHHHHHH
T ss_pred             EEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccc-cCCceEEcCeEeeeCChhhhhhhhc
Confidence            47899999653    589999999999999999999999999999999999999 699999999998542      2346


Q ss_pred             eEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCC
Q psy8250          71 VSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQ  150 (212)
Q Consensus        71 ~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p  150 (212)
                      .+|||||++.+++.+||+||+.++...+.   .+.++.++++.++|+.+||.+..++++.+|||||||||+|||||+.+|
T Consensus        83 ~ig~VfQ~~~l~~~~tv~eni~~~l~~~~---~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P  159 (240)
T d3dhwc1          83 QIGMIFQHFNLLSSRTVFGNVALPLELDN---TPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNP  159 (240)
T ss_dssp             HEEECCSSCCCCTTSBHHHHHHHHHHTTT---CCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCC
T ss_pred             cccccccccccCCCccHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhccCC
Confidence            79999999999999999999999887543   455677888999999999999999999999999999999999999999


Q ss_pred             CeEEecCCCC-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250         151 SGFVPQHDLT-VDTLTVHEHMTLMARLKMDR------NLHHVERARTV-D--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       151 ~llilDEPt~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      ++|||||||+ ||+.++.+++++|++++++.      +|||++++..+ +  .+|++|+++++|+++++.+
T Consensus       160 ~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~  230 (240)
T d3dhwc1         160 KVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS  230 (240)
T ss_dssp             SEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred             CeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            9999999999 99999999999999998763      37999999875 3  4899999999999999864

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=1.3e-60  Score=386.43  Aligned_cols=205  Identities=23%  Similarity=0.261  Sum_probs=180.7

Q ss_pred             CcccccccCCc----ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccc-------cc
Q psy8250           1 METFHPLFGDT----NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL-------MV   69 (212)
Q Consensus         1 ~~~l~~~~~~~----~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~-------~~   69 (212)
                      +++++|.|+..    .+|+||||+|++||++||+||||||||||+++|+|++.| ++|+|+++|++++...       ++
T Consensus         4 i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p-~sG~I~~~g~~i~~~~~~~~~~~r~   82 (230)
T d1l2ta_           4 LKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP-TEGEVYIDNIKTNDLDDDELTKIRR   82 (230)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEETTEECTTCCHHHHHHHHH
T ss_pred             EEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCC-CcceeEECCEEcCcCChhhcchhhc
Confidence            47899999642    489999999999999999999999999999999999999 6999999999986421       23


Q ss_pred             ceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-ccCCCCCCCChHHHHHHHHHHHHhh
Q psy8250          70 KVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQTII  148 (212)
Q Consensus        70 ~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqrqRv~lA~al~~  148 (212)
                      +.+|||||++.+++.+||+||+.++.........+..+..+++.++|+.+++.+ ..+++|.+|||||||||+|||||+.
T Consensus        83 ~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL~~  162 (230)
T d1l2ta_          83 DKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALAN  162 (230)
T ss_dssp             HHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred             ceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhhhc
Confidence            569999999999999999999999887654445567788888999999999976 5899999999999999999999999


Q ss_pred             CCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHHH--HHHHhcCeeecCCc
Q psy8250         149 VQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR------NLHHVERARTVD--ALLKELGLLKCRPA  206 (212)
Q Consensus       149 ~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~~--~~l~~g~~~~~~~~  206 (212)
                      +|++|||||||+ ||+.++.+++++|++++++.      +|||++.++.++  .+|++|+++.+|++
T Consensus       163 ~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~  229 (230)
T d1l2ta_         163 NPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL  229 (230)
T ss_dssp             CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred             CCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHHHhCCEEEEEECCEEEEeccC
Confidence            999999999999 99999999999999998764      279999774333  47899999998864

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=2.5e-59  Score=385.65  Aligned_cols=208  Identities=22%  Similarity=0.286  Sum_probs=186.0

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc--------------
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN--------------   66 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~--------------   66 (212)
                      ++||+|+||+..+|+||||+|++||++||+||||||||||+++|+|+++| ++|+|+++|++++..              
T Consensus         5 v~nl~k~yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p-~~G~I~~~G~~i~~~~~~~~~~~~~~~~~   83 (258)
T d1b0ua_           5 VIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP-SEGAIIVNGQNINLVRDKDGQLKVADKNQ   83 (258)
T ss_dssp             EEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEETTEECCEEECTTSSEEESCHHH
T ss_pred             EEEEEEEECCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccC-CCCCEEECCEEeccCCccchhcccccHhH
Confidence            47999999999999999999999999999999999999999999999999 699999999998531              


Q ss_pred             --cccceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccc-cCCCCCCCChHHHHHHHHH
Q psy8250          67 --LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKC-KNSVLNVLSGGERKRVALA  143 (212)
Q Consensus        67 --~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~~LSgGqrqRv~lA  143 (212)
                        .+++.+|||||++.+++.+||+||+.++....  ...+..+..+++.++++.+++.+. .++++.+|||||||||+||
T Consensus        84 ~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~iA  161 (258)
T d1b0ua_          84 LRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV--LGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIA  161 (258)
T ss_dssp             HHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHH
T ss_pred             HHHHhcceEEEEechhhccchhcchhhhhhHHHh--cCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHHH
Confidence              23467999999999999999999999865332  234677788899999999999774 5888999999999999999


Q ss_pred             HHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHHH---HHHHhcCeeecCCchhhhc
Q psy8250         144 VQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTVD---ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       144 ~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~~  211 (212)
                      |||+.+|++|||||||+ ||+.++.+++++|+++++++     +|||++++...+   .+|++|+++++|+++++..
T Consensus       162 raL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~~g~~~ev~~  238 (258)
T d1b0ua_         162 RALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFG  238 (258)
T ss_dssp             HHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            99999999999999999 99999999999999998774     379999998753   4899999999999999853

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1.9e-58  Score=376.43  Aligned_cols=207  Identities=19%  Similarity=0.272  Sum_probs=188.7

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc--cccceEEEEcCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN--LMVKVSGFVPQH   78 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~--~~~~~i~~v~Q~   78 (212)
                      ++|++|+||++++|+||||+|++||++||+||||||||||+|+|+|++.| ++|+|.++|+++...  ..++.+||+||+
T Consensus         5 v~nl~k~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p-~~G~i~i~G~~i~~~~~~~~~~i~~vpq~   83 (238)
T d1vpla_           5 VKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP-SSGIVTVFGKNVVEEPHEVRKLISYLPEE   83 (238)
T ss_dssp             EEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEETTEETTTCHHHHHTTEEEECTT
T ss_pred             EEeEEEEECCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCCEEEECcEecccChHHHHhhEeEeeec
Confidence            47999999999999999999999999999999999999999999999999 699999999998542  356789999999


Q ss_pred             CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250          79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD  158 (212)
Q Consensus        79 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP  158 (212)
                      +.+++++|+.||+.+...++.   .+..+....++.+++.+++.+..++++.+||||||||++|||||+.+|++||||||
T Consensus        84 ~~~~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLDEP  160 (238)
T d1vpla_          84 AGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEP  160 (238)
T ss_dssp             CCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred             cccCCCccHHHHHHHHHHhcC---CCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence            999999999999999877653   34566777889999999999999999999999999999999999999999999999


Q ss_pred             CC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250         159 LT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       159 t~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      |+ ||+.++.+++++|+++++++     +||+++++... +  .+|++|+++++|+++++.+
T Consensus       161 t~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~  222 (238)
T d1vpla_         161 TSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE  222 (238)
T ss_dssp             TTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            99 99999999999999998775     37999998764 3  4899999999999999864

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=100.00  E-value=1.9e-58  Score=377.08  Aligned_cols=206  Identities=19%  Similarity=0.278  Sum_probs=179.8

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccc---c-cceEEEEc
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL---M-VKVSGFVP   76 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~---~-~~~i~~v~   76 (212)
                      +++|+|+||+..+|+||||+|++||++||+||||||||||+|+|+|+++| ++|+|.++|+++....   . +..++|+|
T Consensus         9 v~~l~k~yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p-~~G~I~~~G~~i~~~~~~~~~r~gi~~~~   87 (240)
T d1ji0a_           9 VQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA-QKGKIIFNGQDITNKPAHVINRMGIALVP   87 (240)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEETTEECTTCCHHHHHHTTEEEEC
T ss_pred             EeeEEEEECCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC-CccEEEecccccccccHHHHHHhcccccC
Confidence            47899999999999999999999999999999999999999999999999 6999999999996532   1 33489999


Q ss_pred             CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHc-CCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEe
Q psy8250          77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKEL-GLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVP  155 (212)
Q Consensus        77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llil  155 (212)
                      |++.+|+.+||+||+.++...+.    ......+.++++++.+ ++.+..++++++|||||||||+|||||+.+|++|||
T Consensus        88 q~~~l~~~ltv~en~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~lLll  163 (240)
T d1ji0a_          88 EGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMM  163 (240)
T ss_dssp             SSCCCCTTSBHHHHHHGGGTTCC----CSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             cccccCCcccHHHHHHHHHHhcC----CHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEeee
Confidence            99999999999999987654322    1223445566777777 688899999999999999999999999999999999


Q ss_pred             cCCCC-CChhhHHHHHHHHHHHHhhcC-----cchHHHHHHHH---HHHHhcCeeecCCchhhhc
Q psy8250         156 QHDLT-VDTLTVHEHMTLMARLKMDRN-----LHHVERARTVD---ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       156 DEPt~-lD~~~~~~~~~~l~~l~~~~~-----~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~~  211 (212)
                      ||||+ |||.++.+++++|+++++++.     +||++++...+   .+|++|+++++|+++++.+
T Consensus       164 DEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~  228 (240)
T d1ji0a_         164 DEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD  228 (240)
T ss_dssp             ECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred             cCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence            99999 999999999999999988743     69999987753   4899999999999999854

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=4.9e-58  Score=372.52  Aligned_cols=200  Identities=26%  Similarity=0.318  Sum_probs=178.5

Q ss_pred             ccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCCCC
Q psy8250           3 TFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLT   81 (212)
Q Consensus         3 ~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~~~   81 (212)
                      ++.|.||+..+  ||||++. +|+++|+||||||||||+|+|+|+++| ++|+|+++|++++.. ..++.||||||++.+
T Consensus         6 ~~~k~~g~~~~--~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p-~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l   81 (240)
T d2onka1           6 RAEKRLGNFRL--NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKP-DRGEVRLNGADITPLPPERRGIGFVPQDYAL   81 (240)
T ss_dssp             EEEEEETTEEE--EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCC-SEEEEEETTEECTTSCTTTSCCBCCCSSCCC
T ss_pred             EEEEEECCEEE--EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCC-CceEEEECCEECCcCCHHHcCceeeccchhh
Confidence            45688888765  8999995 689999999999999999999999999 699999999999653 345779999999999


Q ss_pred             CCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-
Q psy8250          82 VDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-  160 (212)
Q Consensus        82 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-  160 (212)
                      |+.+||+||+.|+.+     ..++.+.++++.++++.+|+++..++++.+|||||||||+|||||+.+|++|||||||+ 
T Consensus        82 ~~~ltV~enl~~~l~-----~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~  156 (240)
T d2onka1          82 FPHLSVYRNIAYGLR-----NVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSA  156 (240)
T ss_dssp             CTTSCHHHHHHTTCT-----TSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSS
T ss_pred             cccchhhHhhhhhhc-----ccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCcccc
Confidence            999999999998642     24566777889999999999999999999999999999999999999999999999999 


Q ss_pred             CChhhHHHHHHHHHHHHhhc------CcchHHHHHHHH---HHHHhcCeeecCCchhhhc
Q psy8250         161 VDTLTVHEHMTLMARLKMDR------NLHHVERARTVD---ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       161 lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~~  211 (212)
                      ||+.++..++++|++++++.      +|||++++...+   .+|++|++++.|+++++.+
T Consensus       157 LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~  216 (240)
T d2onka1         157 VDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFS  216 (240)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHHhc
Confidence            99999999999999997753      379999998753   4899999999999999853

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=5e-58  Score=377.66  Aligned_cols=208  Identities=18%  Similarity=0.190  Sum_probs=181.6

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccc----ccceEEEEc
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL----MVKVSGFVP   76 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~----~~~~i~~v~   76 (212)
                      ++|++|+||+.++|+||||++++||++||+||||||||||+|+|+|+++| ++|+|+++|++++...    .+..++|+|
T Consensus         7 v~nlsk~yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p-~~G~I~~~g~~i~~~~~~~~~~~gi~~v~   85 (254)
T d1g6ha_           7 TENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA-DEGRVYFENKDITNKEPAELYHYGIVRTF   85 (254)
T ss_dssp             EEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEETTEECTTCCHHHHHHHTEEECC
T ss_pred             EEEEEEEECCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcC-CCcEEEECCEeccchhHHHHHHhcCCccC
Confidence            47899999999999999999999999999999999999999999999999 6999999999996532    234599999


Q ss_pred             CCCCCCCCCCHHHHHHHHHhhh----------cccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHH
Q psy8250          77 QHDLTVDTLTVHEHMTLMARLK----------MDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQT  146 (212)
Q Consensus        77 Q~~~~~~~ltv~e~l~~~~~~~----------~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al  146 (212)
                      |++.+++.+||+||+.++...+          ........+..+++.++++.+++.+..++++.+|||||||||+|||||
T Consensus        86 Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv~iAraL  165 (254)
T d1g6ha_          86 QTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRAL  165 (254)
T ss_dssp             CCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHH
T ss_pred             CccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHHHHHHHHHHHH
Confidence            9999999999999998753211          111122345567788999999999999999999999999999999999


Q ss_pred             hhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhcC-----cchHHHHHHH-H--HHHHhcCeeecCCchhh
Q psy8250         147 IIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDRN-----LHHVERARTV-D--ALLKELGLLKCRPADEL  209 (212)
Q Consensus       147 ~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~~-----~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~  209 (212)
                      +.+|++|||||||+ ||+.++.+++++|+++++++.     +||++++... +  .+|++|+++++|+++|+
T Consensus       166 ~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~~~e~  237 (254)
T d1g6ha_         166 MTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEE  237 (254)
T ss_dssp             HTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHHH
T ss_pred             HhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEEEecHHHH
Confidence            99999999999999 999999999999999987643     7999988664 3  48999999999999875

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-55  Score=361.87  Aligned_cols=209  Identities=18%  Similarity=0.222  Sum_probs=170.1

Q ss_pred             CcccccccCCc---ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEE
Q psy8250           1 METFHPLFGDT---NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGF   74 (212)
Q Consensus         1 ~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~   74 (212)
                      +++|+++|++.   .+|+||||+|++||++||+||||||||||+++|+|++.| ++|+|+++|+++..   ..+++.++|
T Consensus        14 ~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p-~~G~I~i~g~~i~~~~~~~~r~~i~~   92 (251)
T d1jj7a_          14 FQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQP-TGGQLLLDGKPLPQYEHRYLHRQVAA   92 (251)
T ss_dssp             EEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEETTEEGGGBCHHHHHHHEEE
T ss_pred             EEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCC-CcCEEEECCEecchhhhHHHHHHhhh
Confidence            46899999653   499999999999999999999999999999999999999 69999999999854   345678999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHhhhccc-CCCHHHHHHHHHHHHHHc--CCccccCCCCCCCChHHHHHHHHHHHHhhCCC
Q psy8250          75 VPQHDLTVDTLTVHEHMTLMARLKMDR-NLHHVERARTVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQTIIVQS  151 (212)
Q Consensus        75 v~Q~~~~~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~  151 (212)
                      |||+|.+|+ .|++||+.++....... ..........+.+.++.+  ++....++.+.+|||||||||+|||||+.+|+
T Consensus        93 v~Q~~~lf~-~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~~p~  171 (251)
T d1jj7a_          93 VGQEPQVFG-RSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPC  171 (251)
T ss_dssp             ECSSCCCCS-SBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTTCCS
T ss_pred             ccccccccC-cchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccccCCc
Confidence            999998876 59999998753211000 000111122234455555  55666778889999999999999999999999


Q ss_pred             eEEecCCCC-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250         152 GFVPQHDLT-VDTLTVHEHMTLMARLKMDR------NLHHVERARTVD--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       152 llilDEPt~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      +|||||||+ ||+.+..+++++|.++.++.      +||+++.+..++  .+|++|+++++|+++|+.+
T Consensus       172 ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~  240 (251)
T d1jj7a_         172 VLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLME  240 (251)
T ss_dssp             EEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred             EEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            999999999 99999999999999986542      379999876654  4799999999999999854

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.6e-55  Score=359.55  Aligned_cols=203  Identities=19%  Similarity=0.279  Sum_probs=164.8

Q ss_pred             CcccccccC--CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250           1 METFHPLFG--DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV   75 (212)
Q Consensus         1 ~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v   75 (212)
                      +++|+++|+  ...+|+||||+|++|+++||+||||||||||+++|+|++.| ++|+|.++|+++..   ..+++.++||
T Consensus         4 ~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p-~~G~I~i~g~~i~~~~~~~lr~~i~~v   82 (241)
T d2pmka1           4 FRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP-ENGQVLIDGHDLALADPNWLRRQVGVV   82 (241)
T ss_dssp             EEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEETTEETTTSCHHHHHHHEEEE
T ss_pred             EEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCC-CCCEEEECCEEecccchhhhhceEEEE
Confidence            478999994  45699999999999999999999999999999999999999 69999999999864   3467889999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHH-----HHHHHHHHc--CCccccCCCCCCCChHHHHHHHHHHHHhh
Q psy8250          76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR-----TVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQTII  148 (212)
Q Consensus        76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgGqrqRv~lA~al~~  148 (212)
                      ||++.+|+ .|++||+.++...     ....+...     .+.+.++.+  ++.......+..|||||||||+|||||+.
T Consensus        83 ~Q~~~lf~-~Ti~eNi~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~  156 (241)
T d2pmka1          83 LQDNVLLN-RSIIDNISLANPG-----MSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN  156 (241)
T ss_dssp             CSSCCCTT-SBHHHHHCTTSTT-----CCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTT
T ss_pred             ecccccCC-ccccccccccCcc-----ccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhc
Confidence            99998876 5999999874321     11111111     112222222  22334566678999999999999999999


Q ss_pred             CCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhh
Q psy8250         149 VQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       149 ~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~  210 (212)
                      +|++|||||||+ ||+.+.+.+++.|+++.+..    +||+++.+..++  .+|++|++++.|+++++.
T Consensus       157 ~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell  225 (241)
T d2pmka1         157 NPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL  225 (241)
T ss_dssp             CCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHH
T ss_pred             ccchhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            999999999999 99999999999999987643    379998776554  478999999999999985

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=7.4e-55  Score=356.10  Aligned_cols=200  Identities=19%  Similarity=0.223  Sum_probs=165.1

Q ss_pred             CcccccccCC-cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEc
Q psy8250           1 METFHPLFGD-TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVP   76 (212)
Q Consensus         1 ~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~   76 (212)
                      ++||+++|++ +.+|+||||+|++||++||+||||||||||+++|+|++.| ++|+|.++|+++..   ..++++++|||
T Consensus         4 ~knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p-~~G~I~i~g~~i~~~~~~~~r~~i~~v~   82 (242)
T d1mv5a_           4 ARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP-TAGEITIDGQPIDNISLENWRSQIGFVS   82 (242)
T ss_dssp             EEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC-SBSCEEETTEESTTTSCSCCTTTCCEEC
T ss_pred             EEEEEEECCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCC-CCCEEEECCEEeccccHHHHHhheEEEc
Confidence            4789999954 6799999999999999999999999999999999999999 69999999999864   34678899999


Q ss_pred             CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-----------ccCCCCCCCChHHHHHHHHHHH
Q psy8250          77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-----------CKNSVLNVLSGGERKRVALAVQ  145 (212)
Q Consensus        77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgGqrqRv~lA~a  145 (212)
                      |++.+|+. |++||+.++...    ....    ..+.+.++..++..           .....+.+|||||||||+||||
T Consensus        83 Q~~~lf~~-ti~eNi~~~~~~----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARa  153 (242)
T d1mv5a_          83 QDSAIMAG-TIRENLTYGLEG----DYTD----EDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARA  153 (242)
T ss_dssp             CSSCCCCE-EHHHHTTSCTTS----CSCH----HHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHH
T ss_pred             cccccCCc-chhhheeccccc----ccch----hhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHH
Confidence            99998877 999999764321    1111    22333444433322           2234456799999999999999


Q ss_pred             HhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhh
Q psy8250         146 TIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELN  210 (212)
Q Consensus       146 l~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~  210 (212)
                      |+.+|++|||||||+ ||+.+...+++.|+++.+..    ++|+++.+..++  .+|++|++++.|+++|+-
T Consensus       154 l~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl  225 (242)
T d1mv5a_         154 FLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELV  225 (242)
T ss_dssp             HHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHH
T ss_pred             HhcCCCEEEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            999999999999999 99999999999999997543    379999887654  479999999999999975

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=5.9e-54  Score=352.85  Aligned_cols=205  Identities=17%  Similarity=0.238  Sum_probs=168.6

Q ss_pred             CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEEE
Q psy8250           1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGFV   75 (212)
Q Consensus         1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~v   75 (212)
                      +++|+++|++  ..+|+||||+|++||++||+||||||||||+++|+|++.| ++|+|+++|+++...   .+++.++|+
T Consensus        16 ~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p-~~G~I~i~g~~i~~~~~~~~r~~i~~v   94 (253)
T d3b60a1          16 FRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI-DEGHILMDGHDLREYTLASLRNQVALV   94 (253)
T ss_dssp             EEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC-SEEEEEETTEETTTBCHHHHHHTEEEE
T ss_pred             EEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCC-CccEEEECCcccchhhhhhhhheEEEE
Confidence            4689999965  3599999999999999999999999999999999999999 699999999998653   466789999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHH-----HHHHHHHHc--CCccccCCCCCCCChHHHHHHHHHHHHhh
Q psy8250          76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR-----TVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQTII  148 (212)
Q Consensus        76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgGqrqRv~lA~al~~  148 (212)
                      ||++.+|.. |+.+|+.++...    ....++..+     .+.++++.+  |++......+.+|||||||||+|||||+.
T Consensus        95 ~Q~~~l~~~-ti~~n~~~~~~~----~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~  169 (253)
T d3b60a1          95 SQNVHLFND-TVANNIAYARTE----EYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR  169 (253)
T ss_dssp             CSSCCCCSS-BHHHHHHTTTTS----CCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred             eeccccCCc-chhhhhhhcCcc----cCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhc
Confidence            999988765 999999875321    122222111     123344444  45666677788999999999999999999


Q ss_pred             CCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250         149 VQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       149 ~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      +|++|||||||+ ||+.++..+++.|+++.+..    +||+++.+..++  .+|++|++++.|+++|+-+
T Consensus       170 ~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~  239 (253)
T d3b60a1         170 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLA  239 (253)
T ss_dssp             CCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred             CCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            999999999999 99999999999999997643    379998776544  4789999999999999753

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=5.6e-54  Score=352.90  Aligned_cols=200  Identities=20%  Similarity=0.248  Sum_probs=166.4

Q ss_pred             CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250           1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV   75 (212)
Q Consensus         1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v   75 (212)
                      +++++++|++  ..+|+||||+|++|+++||+||||||||||+++|+|++.| ++|+|.++|.++..   ..+++.++||
T Consensus        19 ~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p-~~G~I~i~g~~i~~~~~~~lr~~i~~v   97 (255)
T d2hyda1          19 IDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV-TSGQILIDGHNIKDFLTGSLRNQIGLV   97 (255)
T ss_dssp             EEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC-SEEEEEETTEEGGGSCHHHHHHTEEEE
T ss_pred             EEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCc-cccccccCCEEcccCCHHHhhheeeee
Confidence            4689999965  4699999999999999999999999999999999999999 69999999999854   3467889999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-----------ccCCCCCCCChHHHHHHHHHH
Q psy8250          76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-----------CKNSVLNVLSGGERKRVALAV  144 (212)
Q Consensus        76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgGqrqRv~lA~  144 (212)
                      +|++.+|+. ||+||+.++..     ...    .+.+.++++.+++.+           .....+.+||||||||++|||
T Consensus        98 ~Q~~~lf~~-Ti~eNi~~g~~-----~~~----~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iAR  167 (255)
T d2hyda1          98 QQDNILFSD-TVKENILLGRP-----TAT----DEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIAR  167 (255)
T ss_dssp             CSSCCCCSS-BHHHHHGGGCS-----SCC----HHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHH
T ss_pred             eccccCCCC-CHHHHHhccCc-----CCC----HHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHH
Confidence            999988765 99999987532     111    223445555555432           334455689999999999999


Q ss_pred             HHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250         145 QTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       145 al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      ||+++|++|||||||+ ||+.+...+++.|.++....    +||+++.+..++  .+|++|++++.|+++|+.+
T Consensus       168 al~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~  241 (255)
T d2hyda1         168 IFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA  241 (255)
T ss_dssp             HHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            9999999999999999 99999999999999987643    379998776554  4788999999999999854

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.4e-49  Score=321.60  Aligned_cols=196  Identities=22%  Similarity=0.262  Sum_probs=167.5

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEEEcC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGFVPQ   77 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~v~Q   77 (212)
                      ++|++++|    +|++|||+|++||++||+||||||||||+++|+|+. | .+|+|.++|+++...   .++...+|++|
T Consensus         6 ~~dv~~~~----~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~-~~G~I~~~g~~i~~~~~~~~~~~~~~~~~   79 (231)
T d1l7vc_           6 LQDVAEST----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-S-GKGSIQFAGQPLEAWSATKLALHRAYLSQ   79 (231)
T ss_dssp             EEEECCTT----TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-C-CSSEEEESSSBGGGSCHHHHHHHEEEECS
T ss_pred             EECcccCc----eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-C-CceEEEECCEECCcCCHHHHHhhceeeec
Confidence            35666654    699999999999999999999999999999999965 6 589999999988542   23456799999


Q ss_pred             CCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhh-------CC
Q psy8250          78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTII-------VQ  150 (212)
Q Consensus        78 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~-------~p  150 (212)
                      +.......++++++.+....        ....+.+.++++.+++.+..++++.+|||||||||+|||||++       +|
T Consensus        80 ~~~~~~~~~v~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p  151 (231)
T d1l7vc_          80 QQTPPFATPVWHYLTLHQHD--------KTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAG  151 (231)
T ss_dssp             CCCCCSSCBHHHHHHHHCSC--------TTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTC
T ss_pred             cccCCccccHHHHhhhccch--------hhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCC
Confidence            88777778999988764321        1224567889999999999999999999999999999999998       77


Q ss_pred             CeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHHH---HHHHhcCeeecCCchhhh
Q psy8250         151 SGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTVD---ALLKELGLLKCRPADELN  210 (212)
Q Consensus       151 ~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~  210 (212)
                      ++|||||||+ ||+.++..++++|+++++++     .+||++++...+   .+|++|+++++|+++|+.
T Consensus       152 ~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~  220 (231)
T d1l7vc_         152 QLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL  220 (231)
T ss_dssp             CEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHS
T ss_pred             CEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECCHHHHh
Confidence            9999999999 99999999999999998875     379999987753   489999999999999874

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=2.4e-48  Score=309.29  Aligned_cols=170  Identities=22%  Similarity=0.357  Sum_probs=149.2

Q ss_pred             CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCC
Q psy8250           1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL   80 (212)
Q Consensus         1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~   80 (212)
                      ++||++.|+. ++|+||||+|++|+++||+||||||||||+++|+|+++| ++|+|.++|+++..  .+..++|+||+..
T Consensus         5 v~~ls~~y~~-~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p-~~G~I~~~g~~i~~--~~~~i~~~~~~~~   80 (200)
T d1sgwa_           5 IRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP-LKGEIIYNGVPITK--VKGKIFFLPEEII   80 (200)
T ss_dssp             EEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEETTEEGGG--GGGGEEEECSSCC
T ss_pred             EEEEEEEeCC-eEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhccccc-CCCEEEECCEehhH--hcCcEEEEeeccc
Confidence            4789999964 799999999999999999999999999999999999999 69999999999853  4567999999999


Q ss_pred             CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC
Q psy8250          81 TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT  160 (212)
Q Consensus        81 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~  160 (212)
                      ++..+|+.+++.+....+... ..    ...+.++++.+++.+ .++++.+||||||||++|||||+.+|+++||||||+
T Consensus        81 ~~~~~t~~~~l~~~~~~~~~~-~~----~~~~~~~l~~~~~~~-~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~  154 (200)
T d1sgwa_          81 VPRKISVEDYLKAVASLYGVK-VN----KNEIMDALESVEVLD-LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVV  154 (200)
T ss_dssp             CCTTSBHHHHHHHHHHHTTCC-CC----HHHHHHHHHHTTCCC-TTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTT
T ss_pred             CCCCcCHHHHHHHHHHhcCCc-cC----HHHHHHHHHHcCCcc-cccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCccc
Confidence            999999999999877665322 22    234667888888865 456789999999999999999999999999999999


Q ss_pred             -CChhhHHHHHHHHHHHHhhc
Q psy8250         161 -VDTLTVHEHMTLMARLKMDR  180 (212)
Q Consensus       161 -lD~~~~~~~~~~l~~l~~~~  180 (212)
                       ||+.++..+++.|.++.++.
T Consensus       155 gLD~~~~~~i~~~l~~~~~~~  175 (200)
T d1sgwa_         155 AIDEDSKHKVLKSILEILKEK  175 (200)
T ss_dssp             TSCTTTHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHHhCC
Confidence             99999999999999987654

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.7e-48  Score=322.59  Aligned_cols=183  Identities=21%  Similarity=0.268  Sum_probs=146.5

Q ss_pred             ccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCC
Q psy8250           7 LFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLT   86 (212)
Q Consensus         7 ~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~lt   86 (212)
                      +|+++++|+||||+|++||++||+||||||||||+++|+|++.| ++|+|.++|+          ++|+||++.+++. |
T Consensus        45 ~~~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p-~~G~I~~~g~----------i~~v~Q~~~l~~~-t  112 (281)
T d1r0wa_          45 CLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEA-SEGIIKHSGR----------VSFCSQFSWIMPG-T  112 (281)
T ss_dssp             HHTTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCC-SEEEEECCSC----------EEEECSSCCCCSE-E
T ss_pred             CCCCCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcC-CCcEEEECCE----------EEEEeccccccCc-e
Confidence            35678899999999999999999999999999999999999999 6999999983          7999999988876 9


Q ss_pred             HHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcC-------C----ccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEe
Q psy8250          87 VHEHMTLMARLKMDRNLHHVERARTVDALLKELG-------L----LKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVP  155 (212)
Q Consensus        87 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-------l----~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llil  155 (212)
                      ++||+.++...      ...    ...++++...       +    .....+.+.+|||||||||+|||||+++|++|||
T Consensus       113 v~eni~~~~~~------~~~----~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illL  182 (281)
T d1r0wa_         113 IKENIIFGVSY------DEY----RYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLL  182 (281)
T ss_dssp             HHHHHTTTSCC------CHH----HHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEE
T ss_pred             eeccccccccc------cch----HHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhh
Confidence            99999875321      111    1122222222       2    2234556678999999999999999999999999


Q ss_pred             cCCCC-CChhhHHHHHHHH-HHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250         156 QHDLT-VDTLTVHEHMTLM-ARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR  211 (212)
Q Consensus       156 DEPt~-lD~~~~~~~~~~l-~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~  211 (212)
                      ||||+ ||+.+..++++.+ ..+....    .+|+++.+..++  .+|++|++++.|+++|+..
T Consensus       183 DEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~  246 (281)
T d1r0wa_         183 DSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQS  246 (281)
T ss_dssp             ESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred             cCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence            99999 9999999998754 3333322    379998776554  4789999999999999853

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.63  E-value=4.9e-18  Score=129.38  Aligned_cols=150  Identities=12%  Similarity=-0.002  Sum_probs=82.5

Q ss_pred             EEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccc--eEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVK--VSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNL  103 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~--~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~  103 (212)
                      .++|+||||||||||+++|+|.+.+ ..|.+.+.+.+......+.  .+.++......+...+....      ... .. 
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-~~-   72 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGK-RAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSK------KLV-GS-   72 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGG-GEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCS------SEE-TT-
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCC-CcceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhhhh------hhh-hh-
Confidence            3799999999999999999999988 6999998876653221111  11111000000000000000      000 00 


Q ss_pred             CHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCCCChhhHHHHHHHHHHHHhh-c--
Q psy8250         104 HHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHMTLMARLKMD-R--  180 (212)
Q Consensus       104 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~lD~~~~~~~~~~l~~l~~~-~--  180 (212)
                                     .+    .+....++|+|+++|.++++++..+|+++++|||...+... ..+.+.+.++-.+ .  
T Consensus        73 ---------------~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~-~~~~~~l~~~l~~~~~~  132 (178)
T d1ye8a1          73 ---------------YG----VNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFS-KKFRDLVRQIMHDPNVN  132 (178)
T ss_dssp             ---------------EE----ECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGC-HHHHHHHHHHHTCTTSE
T ss_pred             ---------------hh----cCcchhhhhhhhhHHHHHHHHHhcCCCceeecCCCccchhh-HHHHHHHHHHhccCCCE
Confidence                           00    01111247899999999999999999999999997632222 3444444444332 2  


Q ss_pred             ---CcchHHHHHHH--HHHHHhcCeeecC
Q psy8250         181 ---NLHHVERARTV--DALLKELGLLKCR  204 (212)
Q Consensus       181 ---~~h~~~~~~~~--~~~l~~g~~~~~~  204 (212)
                         .+|+.+.....  ...+.+|+++...
T Consensus       133 il~~~h~~~~~~~~~~i~~~~~~~i~~v~  161 (178)
T d1ye8a1         133 VVATIPIRDVHPLVKEIRRLPGAVLIELT  161 (178)
T ss_dssp             EEEECCSSCCSHHHHHHHTCTTCEEEECC
T ss_pred             EEEEEccHHHHHhhceEEEEeCCEEEEEC
Confidence               24553322222  3345588876544

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.93  E-value=1.3e-08  Score=82.69  Aligned_cols=61  Identities=23%  Similarity=0.214  Sum_probs=49.4

Q ss_pred             CCCCCChHHHHHHHHHHHH----hhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHH
Q psy8250         128 VLNVLSGGERKRVALAVQT----IIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERA  188 (212)
Q Consensus       128 ~~~~LSgGqrqRv~lA~al----~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~  188 (212)
                      ....+|+|||+.+.++..+    ...|.++++|||-+ |+|..++++.++|++.....    +||..+.+
T Consensus       216 ~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~  285 (308)
T d1e69a_         216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVM  285 (308)
T ss_dssp             BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGG
T ss_pred             hhhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHH
Confidence            3568999999998877654    34578999999999 99999999999999886542    37886655

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.40  E-value=1.7e-07  Score=78.59  Aligned_cols=62  Identities=21%  Similarity=0.149  Sum_probs=49.6

Q ss_pred             CCCCChHHHHHHHHHHHH----hhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHH
Q psy8250         129 LNVLSGGERKRVALAVQT----IIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERART  190 (212)
Q Consensus       129 ~~~LSgGqrqRv~lA~al----~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~  190 (212)
                      ...||||||.+++||..+    +.++++++||||++ ||+..+..+.++|.++....     +||+...+..
T Consensus       330 ~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~  401 (427)
T d1w1wa_         330 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEK  401 (427)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTT
T ss_pred             hhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHh
Confidence            367899999998877544    35678999999999 99999999999998875332     3899876644

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.23  E-value=1.3e-05  Score=62.50  Aligned_cols=41  Identities=15%  Similarity=0.000  Sum_probs=28.5

Q ss_pred             hCCCeEEecCCCC-CChhhHHHH-HHHHHHHHhhc-----CcchHHHH
Q psy8250         148 IVQSGFVPQHDLT-VDTLTVHEH-MTLMARLKMDR-----NLHHVERA  188 (212)
Q Consensus       148 ~~p~llilDEPt~-lD~~~~~~~-~~~l~~l~~~~-----~~h~~~~~  188 (212)
                      .+..++|+||+.. -++.....+ +.++..+.+..     .||+.+..
T Consensus       113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~  160 (224)
T d1ewqa2         113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELT  160 (224)
T ss_dssp             CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHH
T ss_pred             CCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhh
Confidence            4556999999999 788777655 45566666543     37886654

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=98.23  E-value=2.1e-08  Score=75.30  Aligned_cols=36  Identities=22%  Similarity=0.121  Sum_probs=30.4

Q ss_pred             cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcC
Q psy8250          11 TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        11 ~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      ...+++.++++.+| +++|+|||||||||+|.+|.-.
T Consensus        12 f~~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~   47 (222)
T d1qhla_          12 WNGFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA   47 (222)
T ss_dssp             ETTEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred             ccCEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence            34567888888877 8999999999999999999643

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.02  E-value=1.3e-06  Score=65.46  Aligned_cols=26  Identities=38%  Similarity=0.892  Sum_probs=23.4

Q ss_pred             CcEEEEECCCCccHHHHHHHHHcCCC
Q psy8250          24 GSLLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        24 Ge~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      |.+++|+||||||||||++.|....+
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence            88999999999999999999986553

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=98.01  E-value=1.5e-06  Score=63.61  Aligned_cols=24  Identities=46%  Similarity=0.498  Sum_probs=21.3

Q ss_pred             EEEEECCCCccHHHHHHHHHcCCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      +++|+|++|||||||++.|...+.
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~   27 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALC   27 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            789999999999999999986543

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.96  E-value=2.2e-06  Score=66.91  Aligned_cols=58  Identities=21%  Similarity=0.340  Sum_probs=34.2

Q ss_pred             CCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEEC---CEeCCc-cccc--ceEEEEcCCCCC
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLN---GLEVEK-NLMV--KVSGFVPQHDLT   81 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~---g~~~~~-~~~~--~~i~~v~Q~~~~   81 (212)
                      +|+..+++|+||+|||||+|.|.+-..- ..|+|.-.   |+-.+. ..+-  ..=|++-+.|.+
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~-~T~~vs~~~~rGrHTTt~~~l~~l~~gg~iiDTPG~  157 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGLKL-RVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGF  157 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCCC-C-------------CCCSCCEEECTTSCEEESSCSS
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchhhh-hccCcccccCCCCccccceeEEEECCCcEEEeCCcc
Confidence            5899999999999999999999886554 46776532   333322 1111  112688787765

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.94  E-value=4.2e-06  Score=61.36  Aligned_cols=36  Identities=19%  Similarity=0.377  Sum_probs=28.4

Q ss_pred             CCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCE
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGL   61 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~   61 (212)
                      .|+++.|.||+||||||+.+.|+..+..   --+.+++.
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~lg~---~~~~~~~d   38 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLPGV---PKVHFHSD   38 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSSS---CEEEECTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCC---CEEEecHH
Confidence            5889999999999999999999876532   14556653

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.87  E-value=4.7e-06  Score=69.48  Aligned_cols=28  Identities=29%  Similarity=0.544  Sum_probs=23.6

Q ss_pred             EEEEcCCcEEEEECCCCccHHHHHHHHH
Q psy8250          18 SGIAESGSLLAIMGPSGAGKTTLLACIS   45 (212)
Q Consensus        18 s~~i~~Ge~~~iiGpnGaGKSTLl~~i~   45 (212)
                      .+++.++.+.+|+|||||||||+|.+|+
T Consensus        19 ~i~f~~~~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          19 KVGFGESNFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred             EEeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence            3455656699999999999999999984

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.84  E-value=4.7e-06  Score=61.00  Aligned_cols=27  Identities=22%  Similarity=0.548  Sum_probs=24.2

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++.++.|.||+||||||+.+.|+..+
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l   30 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQL   30 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            467899999999999999999998754

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.81  E-value=3e-06  Score=62.43  Aligned_cols=25  Identities=24%  Similarity=0.304  Sum_probs=21.7

Q ss_pred             cEEEEECCCCccHHHHHHHHHcCCC
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      .+++|+|++|||||||++.|...+.
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~   26 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAV   26 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            4789999999999999998877654

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=1.8e-06  Score=63.47  Aligned_cols=32  Identities=28%  Similarity=0.412  Sum_probs=25.4

Q ss_pred             cEEEEECCCCccHHHHHHHHHcCCCCCCceEEE
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQRIQGDVDGQIL   57 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~   57 (212)
                      ..+.|.||+|+|||||++.++..+.. ..+.+.
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~~-~~~~v~   33 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLKS-SGVPVD   33 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHHH-TTCCCE
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHH-CCCEEE
Confidence            35789999999999999999988765 344443

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.79  E-value=6.1e-06  Score=60.42  Aligned_cols=27  Identities=15%  Similarity=0.309  Sum_probs=24.3

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      ++|-++.|+|++||||||+-+.|+-.+
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L   30 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTL   30 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            578999999999999999999998655

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.78  E-value=6.6e-06  Score=63.23  Aligned_cols=25  Identities=36%  Similarity=0.725  Sum_probs=22.5

Q ss_pred             CCcEEEEECCCCccHHHHHHHHHcC
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      +|.++.|+||||||||||++.|.-.
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999999988754

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.75  E-value=2.4e-06  Score=66.96  Aligned_cols=58  Identities=22%  Similarity=0.272  Sum_probs=30.8

Q ss_pred             CCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEEC---CEeCCc-ccc-cceEEEEcCCCCC
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLN---GLEVEK-NLM-VKVSGFVPQHDLT   81 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~---g~~~~~-~~~-~~~i~~v~Q~~~~   81 (212)
                      +|...+++|+||+|||||+|.|.|-..- ..|.|.-.   |+-.+. ..+ .-.=|++-+.|.+
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~-~t~~vs~~~~rGrHTTt~~~l~~~~gg~iiDTPG~  158 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELGL-RTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGF  158 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC--------------------CCCCCEEEETTEEEESSCSC
T ss_pred             ccceEEEECCCCccHHHHHHhhccHhHh-hhcccccccCCCceeeeeEEEEecCCCEEEECCcc
Confidence            5889999999999999999999986554 46777532   222221 111 1112778787765

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.74  E-value=7e-06  Score=60.24  Aligned_cols=24  Identities=25%  Similarity=0.462  Sum_probs=21.4

Q ss_pred             cEEEEECCCCccHHHHHHHHHcCC
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      ..++|.||.|||||||.+.|+..+
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999999754

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.68  E-value=1.2e-05  Score=58.72  Aligned_cols=27  Identities=30%  Similarity=0.535  Sum_probs=23.8

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      ++|-.++|.||+||||||+.+.|+-.+
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence            467789999999999999999998654

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.66  E-value=1.4e-05  Score=58.32  Aligned_cols=26  Identities=23%  Similarity=0.560  Sum_probs=23.3

Q ss_pred             CcEEEEECCCCccHHHHHHHHHcCCC
Q psy8250          24 GSLLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        24 Ge~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      ..++.|.||+||||||+.+.|+..+.
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            56899999999999999999998764

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.64  E-value=1.4e-05  Score=58.70  Aligned_cols=27  Identities=19%  Similarity=0.330  Sum_probs=23.1

Q ss_pred             CcEEEEECCCCccHHHHHHHHHcCCCC
Q psy8250          24 GSLLAIMGPSGAGKTTLLACISQRIQG   50 (212)
Q Consensus        24 Ge~~~iiGpnGaGKSTLl~~i~g~~~p   50 (212)
                      +.+++|.|++||||||+.+.|+-.+..
T Consensus         1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~   27 (190)
T d1khta_           1 NKVVVVTGVPGVGSTTSSQLAMDNLRK   27 (190)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            368999999999999999999876543

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.64  E-value=1.4e-05  Score=57.37  Aligned_cols=34  Identities=21%  Similarity=0.293  Sum_probs=24.6

Q ss_pred             cEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEe
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLE   62 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~   62 (212)
                      +++.|.||+|||||||.+.|..-    ..|.+.++..+
T Consensus         3 klIii~G~pGsGKTTla~~L~~~----~~~~~~~~~d~   36 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAK----NPGFYNINRDD   36 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH----STTEEEECHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh----CCCCEEechHH
Confidence            47889999999999999987531    23555665433

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.60  E-value=1.3e-05  Score=59.67  Aligned_cols=24  Identities=46%  Similarity=0.565  Sum_probs=21.0

Q ss_pred             EEEEECCCCccHHHHHHHHHcCCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      ++||-||+|||||||.+.|.-.+.
T Consensus        24 iIgI~G~~GSGKSTla~~L~~~l~   47 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQTLR   47 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            689999999999999999986543

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.59  E-value=1.6e-05  Score=56.91  Aligned_cols=23  Identities=35%  Similarity=0.635  Sum_probs=20.5

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .+.|+||+||||||+-+.|+-.+
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L   26 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQL   26 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            47789999999999999998755

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.55  E-value=2e-05  Score=57.10  Aligned_cols=32  Identities=28%  Similarity=0.585  Sum_probs=24.9

Q ss_pred             cEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECC
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG   60 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g   60 (212)
                      .++.|.||+||||||+.+.|+..+.    +.+++++
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~----~~~~~~~   34 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLD----NSAYIEG   34 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSS----SEEEEEH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcC----CCEEEeh
Confidence            4788999999999999999997542    3455554

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.53  E-value=2.1e-05  Score=57.18  Aligned_cols=22  Identities=32%  Similarity=0.510  Sum_probs=19.3

Q ss_pred             EEEECCCCccHHHHHHHHHcCC
Q psy8250          27 LAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        27 ~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      ++|+||+||||||+.+.|+-.+
T Consensus         7 I~i~G~pGsGKTTia~~La~~l   28 (173)
T d1rkba_           7 ILLTGTPGVGKTTLGKELASKS   28 (173)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6799999999999999998643

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=1.5e-05  Score=59.31  Aligned_cols=26  Identities=35%  Similarity=0.528  Sum_probs=23.3

Q ss_pred             CCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      +|-++.|+|++||||||+-+.|+-.+
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l   43 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYL   43 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999998654

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.51  E-value=1.9e-05  Score=59.36  Aligned_cols=22  Identities=27%  Similarity=0.557  Sum_probs=20.6

Q ss_pred             EEEEECCCCccHHHHHHHHHcC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      .++|+|+.|||||||++.|+|.
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHhcCC
Confidence            4999999999999999999985

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.50  E-value=2.4e-05  Score=60.22  Aligned_cols=22  Identities=32%  Similarity=0.590  Sum_probs=19.8

Q ss_pred             EEEEECCCCccHHHHHHHHHcC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      +++|+||.|||||||++.|...
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~   23 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRY   23 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Confidence            6899999999999999999753

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.50  E-value=2.4e-05  Score=58.72  Aligned_cols=22  Identities=45%  Similarity=0.715  Sum_probs=19.4

Q ss_pred             EEEECCCCccHHHHHHHHHcCC
Q psy8250          27 LAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        27 ~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      ++|+||||||||||++.|+...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            6899999999999999987643

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=3.3e-05  Score=57.79  Aligned_cols=23  Identities=17%  Similarity=0.498  Sum_probs=20.4

Q ss_pred             cEEEEECCCCccHHHHHHHHHcC
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      ..+.|+||||||||||++.|...
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHh
Confidence            57899999999999999988753

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.43  E-value=7.4e-05  Score=55.27  Aligned_cols=22  Identities=36%  Similarity=0.601  Sum_probs=20.3

Q ss_pred             EEEEECCCCccHHHHHHHHHcC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      .+||+|+.|+|||||++.|+|.
T Consensus        10 kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            5899999999999999999874

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.43  E-value=3.8e-05  Score=56.33  Aligned_cols=23  Identities=26%  Similarity=0.466  Sum_probs=20.0

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|+.|+|||||++.|+|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~   24 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999999854

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.43  E-value=3.4e-05  Score=58.14  Aligned_cols=21  Identities=52%  Similarity=0.800  Sum_probs=18.7

Q ss_pred             EEEECCCCccHHHHHHHHHcC
Q psy8250          27 LAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        27 ~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      ++|+||||||||||.+.|.-.
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            679999999999999998753

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.40  E-value=2.2e-05  Score=58.42  Aligned_cols=21  Identities=33%  Similarity=0.607  Sum_probs=19.5

Q ss_pred             EEEECCCCccHHHHHHHHHcC
Q psy8250          27 LAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        27 ~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      +||+|+.++|||||++.|+|.
T Consensus         4 VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEEE
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            799999999999999999874

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=4e-05  Score=58.33  Aligned_cols=23  Identities=30%  Similarity=0.524  Sum_probs=20.7

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      ++||-||+||||||+.+.|+-.+
T Consensus         4 iIgI~G~~gSGKSTla~~L~~~l   26 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQLL   26 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999997655

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.40  E-value=2.9e-05  Score=57.35  Aligned_cols=23  Identities=26%  Similarity=0.429  Sum_probs=20.7

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|+.|+|||||++.|+|..
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~   24 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKK   24 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999853

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.40  E-value=7.1e-05  Score=58.49  Aligned_cols=32  Identities=25%  Similarity=0.345  Sum_probs=24.2

Q ss_pred             eeeeeEEEEcCCcEEEEECCCCccHHHHHHHHH
Q psy8250          13 YKESLSGIAESGSLLAIMGPSGAGKTTLLACIS   45 (212)
Q Consensus        13 ~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~   45 (212)
                      +=++++++ +.+.++.|.|||.+||||+||.++
T Consensus        31 VpNdi~l~-~~~~~~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          31 IANPLNLS-PQRRMLIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             CCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHH
T ss_pred             cceeEEEC-CCceEEEEeccCchhhHHHHHHHH
Confidence            33444443 335789999999999999999985

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.36  E-value=4.9e-05  Score=55.81  Aligned_cols=22  Identities=36%  Similarity=0.596  Sum_probs=20.2

Q ss_pred             EEEEECCCCccHHHHHHHHHcC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      +++|+|..|+|||||++.|+|.
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999974

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.33  E-value=5.8e-05  Score=55.76  Aligned_cols=23  Identities=35%  Similarity=0.494  Sum_probs=21.2

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      +++|+|+.|+|||||++.|+|..
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~~   29 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGVK   29 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            69999999999999999999853

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.32  E-value=5.6e-05  Score=53.96  Aligned_cols=23  Identities=39%  Similarity=0.495  Sum_probs=20.4

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|++|+|||||++.+.+-.
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~   24 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDR   24 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            46799999999999999999854

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.32  E-value=5.6e-05  Score=55.25  Aligned_cols=22  Identities=27%  Similarity=0.605  Sum_probs=19.7

Q ss_pred             EEEECCCCccHHHHHHHHHcCC
Q psy8250          27 LAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        27 ~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      +.|+|++||||||+.+.|+..+
T Consensus         3 I~liG~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDL   24 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6789999999999999998754

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=7.6e-05  Score=55.50  Aligned_cols=28  Identities=25%  Similarity=0.418  Sum_probs=24.8

Q ss_pred             EcCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          21 AESGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        21 i~~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      +.+|+++.|.||+|+|||||...++...
T Consensus        20 i~~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          20 IETGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999988877533

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.31  E-value=5.7e-05  Score=56.78  Aligned_cols=23  Identities=35%  Similarity=0.612  Sum_probs=21.0

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|+.|||||||++.|.+-.
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~~   27 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTDS   27 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999854

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.28  E-value=6.1e-05  Score=56.34  Aligned_cols=23  Identities=30%  Similarity=0.476  Sum_probs=20.9

Q ss_pred             CcEEEEECCCCccHHHHHHHHHc
Q psy8250          24 GSLLAIMGPSGAGKTTLLACISQ   46 (212)
Q Consensus        24 Ge~~~iiGpnGaGKSTLl~~i~g   46 (212)
                      -.++.|+||.||||||+.+.|+-
T Consensus         6 p~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999999985

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.27  E-value=4.1e-05  Score=56.05  Aligned_cols=23  Identities=39%  Similarity=0.517  Sum_probs=20.3

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|++|||||||++.+.+-.
T Consensus        15 kI~lvG~~~vGKTsLl~~l~~~~   37 (186)
T d1f6ba_          15 KLVFLGLDNAGKTTLLHMLKDDR   37 (186)
T ss_dssp             EEEEEEETTSSHHHHHHHHSCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58899999999999999998754

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.27  E-value=7e-05  Score=53.51  Aligned_cols=23  Identities=30%  Similarity=0.369  Sum_probs=19.8

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|+.|+|||||++.+++-.
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~~   24 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLGE   24 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            36799999999999999987643

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.26  E-value=6.1e-05  Score=55.36  Aligned_cols=25  Identities=28%  Similarity=0.490  Sum_probs=21.8

Q ss_pred             cEEEEECCCCccHHHHHHHHHcCCC
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      .++.|.|++||||||+.+.|+..+.
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~   26 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3678899999999999999987664

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.26  E-value=4.4e-05  Score=56.49  Aligned_cols=22  Identities=32%  Similarity=0.604  Sum_probs=20.1

Q ss_pred             EEEECCCCccHHHHHHHHHcCC
Q psy8250          27 LAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        27 ~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      +||+|..|+|||||++.|+|.-
T Consensus         4 VaivG~~nvGKSTLin~L~~~~   25 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRAH   25 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSSC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7999999999999999998753

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.25  E-value=8.3e-05  Score=55.72  Aligned_cols=26  Identities=27%  Similarity=0.377  Sum_probs=22.6

Q ss_pred             CCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      +-.++.|+||.||||||+.+.|+..+
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            45579999999999999999998744

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=97.24  E-value=7e-05  Score=53.86  Aligned_cols=22  Identities=41%  Similarity=0.564  Sum_probs=20.1

Q ss_pred             EEEECCCCccHHHHHHHHHcCC
Q psy8250          27 LAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        27 ~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      ++|+|++|+|||||++.+.+-.
T Consensus         8 I~ivG~~~vGKSSLi~~~~~~~   29 (169)
T d1upta_           8 ILILGLDGAGKTTILYRLQVGE   29 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            8899999999999999998754

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.23  E-value=6.2e-05  Score=56.49  Aligned_cols=27  Identities=26%  Similarity=0.438  Sum_probs=24.0

Q ss_pred             EcCCcEEEEECCCCccHHHHHHHHHcC
Q psy8250          21 AESGSLLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        21 i~~Ge~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      +..+.++.|+||.||||||+.+.|+-.
T Consensus         5 ~~~~~iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_           5 LKKSKIIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             HHTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            456789999999999999999999863

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.23  E-value=7e-05  Score=55.04  Aligned_cols=23  Identities=22%  Similarity=0.403  Sum_probs=19.7

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .+.|+|++||||||+-+.|+-.+
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~L   26 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARAL   26 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            46689999999999999998543

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=97.20  E-value=8.2e-05  Score=53.65  Aligned_cols=23  Identities=35%  Similarity=0.550  Sum_probs=20.9

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|+.|+|||||++.|+|.-
T Consensus         3 kI~lvG~~nvGKSsLin~l~~~~   25 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAGRE   25 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999999854

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.19  E-value=7.2e-05  Score=61.20  Aligned_cols=36  Identities=28%  Similarity=0.399  Sum_probs=28.0

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEE
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILL   58 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~   58 (212)
                      ..+..+.|.||.||||||||++|++.+++ ..=-|.+
T Consensus       164 ~~~~nili~G~tgSGKTT~l~al~~~i~~-~~rivti  199 (323)
T d1g6oa_         164 AIGKNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISI  199 (323)
T ss_dssp             HHTCCEEEEESTTSSHHHHHHHHGGGSCT-TCCEEEE
T ss_pred             HhCCCEEEEeeccccchHHHHHHhhhccc-ccceeec
Confidence            34555899999999999999999998876 3434444

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.16  E-value=9.6e-05  Score=56.67  Aligned_cols=26  Identities=31%  Similarity=0.566  Sum_probs=21.0

Q ss_pred             CCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      ++.+++++||+|+||||.+-=|+-.+
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~   30 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYY   30 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999998866566433

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.16  E-value=0.0001  Score=53.85  Aligned_cols=23  Identities=22%  Similarity=0.460  Sum_probs=19.8

Q ss_pred             EEEECCCCccHHHHHHHHHcCCC
Q psy8250          27 LAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        27 ~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      +.|+|+.||||||+-+.|+..+.
T Consensus         4 IvliG~~G~GKSTig~~La~~l~   26 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKALG   26 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            56889999999999999987553

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.16  E-value=0.00013  Score=54.34  Aligned_cols=25  Identities=32%  Similarity=0.566  Sum_probs=22.2

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHc
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQ   46 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g   46 (212)
                      ++|=.+.|+||.||||||..+.|+-
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHH
Confidence            4577788999999999999999984

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.00011  Score=54.72  Aligned_cols=22  Identities=36%  Similarity=0.566  Sum_probs=19.9

Q ss_pred             EEEEECCCCccHHHHHHHHHcC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      ++.|+||.||||||..+.|+-.
T Consensus         3 iI~i~GppGSGKsT~a~~La~~   24 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEK   24 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6799999999999999999863

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.11  E-value=0.00013  Score=53.59  Aligned_cols=22  Identities=41%  Similarity=0.486  Sum_probs=19.5

Q ss_pred             EEEECCCCccHHHHHHHHHcCC
Q psy8250          27 LAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        27 ~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      +.|+||.||||||+.+.|+-.+
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6799999999999999997643

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.10  E-value=8.6e-05  Score=55.35  Aligned_cols=23  Identities=26%  Similarity=0.338  Sum_probs=19.8

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .+.|+||.||||||+.+.|+-.+
T Consensus         5 ~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            36799999999999999998543

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=97.07  E-value=0.00014  Score=52.73  Aligned_cols=24  Identities=33%  Similarity=0.389  Sum_probs=20.9

Q ss_pred             EEEEECCCCccHHHHHHHHHcCCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      .++|+|+.|||||||++.+.+...
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~~~   27 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGEDV   27 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCC
Confidence            378999999999999999988543

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=97.06  E-value=5.3e-05  Score=55.62  Aligned_cols=24  Identities=29%  Similarity=0.415  Sum_probs=20.7

Q ss_pred             cEEEEECCCCccHHHHHHHHHcCC
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      =.++|+|+.++|||||++.|++.-
T Consensus        17 ~~I~lvG~~NvGKSSL~n~L~~~~   40 (188)
T d1puia_          17 IEVAFAGRSNAGKSSALNTLTNQK   40 (188)
T ss_dssp             EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            359999999999999999998743

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.05  E-value=0.00011  Score=54.87  Aligned_cols=25  Identities=32%  Similarity=0.328  Sum_probs=21.9

Q ss_pred             CcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          24 GSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        24 Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .-+++|-|+.||||||+++.|...+
T Consensus         9 p~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1           9 PFTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            3479999999999999999998754

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.05  E-value=0.00016  Score=54.07  Aligned_cols=23  Identities=22%  Similarity=0.440  Sum_probs=20.6

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      ++.++|.+||||||+.+.|+..+
T Consensus         4 li~l~GlpgsGKSTla~~L~~~l   26 (213)
T d1bifa1           4 LIVMVGLPARGKTYISKKLTRYL   26 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68899999999999999998644

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.04  E-value=0.00013  Score=54.39  Aligned_cols=21  Identities=33%  Similarity=0.623  Sum_probs=19.2

Q ss_pred             EEEEECCCCccHHHHHHHHHc
Q psy8250          26 LLAIMGPSGAGKTTLLACISQ   46 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g   46 (212)
                      ++||.|+.||||||+.+.|.-
T Consensus         5 IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           5 IIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999864

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.04  E-value=0.00018  Score=53.27  Aligned_cols=24  Identities=25%  Similarity=0.373  Sum_probs=21.0

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHH
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACIS   45 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~   45 (212)
                      +.-+++.++|++||||||+.+-++
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~   35 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHL   35 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            455789999999999999998875

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.04  E-value=0.00015  Score=56.48  Aligned_cols=35  Identities=31%  Similarity=0.523  Sum_probs=26.9

Q ss_pred             CCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECC
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG   60 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g   60 (212)
                      ....+.|.||.|||||||.+.|++.+..   +-+.++.
T Consensus        31 ~P~~ilL~GpPGtGKT~la~~la~~~~~---~~~~i~~   65 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLRSAIFEETQG---NVIVIDN   65 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHTTT---CCEEECT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhhc---ceEEEec
Confidence            3446889999999999999999986642   3455654

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.02  E-value=0.00018  Score=54.30  Aligned_cols=23  Identities=43%  Similarity=0.767  Sum_probs=21.0

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      +++|.||.||||||+-+.|+..+
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~   27 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEAL   27 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            88999999999999999998654

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.01  E-value=0.00019  Score=53.08  Aligned_cols=23  Identities=35%  Similarity=0.484  Sum_probs=20.1

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .+.|+||.||||||+.+.|+-.+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            46799999999999999998644

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.99  E-value=5e-05  Score=54.78  Aligned_cols=23  Identities=30%  Similarity=0.443  Sum_probs=20.5

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|+.|+|||||++.|+|.-
T Consensus         2 kI~liG~~n~GKSSLin~l~g~~   24 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNED   24 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            37999999999999999999853

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.99  E-value=0.00014  Score=57.28  Aligned_cols=23  Identities=26%  Similarity=0.481  Sum_probs=21.1

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|.+|+|||||+|.|.|..
T Consensus        34 ~I~LvG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          34 TILVMGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            48899999999999999999964

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.96  E-value=0.00021  Score=54.23  Aligned_cols=23  Identities=35%  Similarity=0.603  Sum_probs=20.3

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      +++|-||.||||||.-+.|+--+
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~l   27 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDF   27 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57888999999999999998754

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.96  E-value=0.00021  Score=53.84  Aligned_cols=23  Identities=22%  Similarity=0.296  Sum_probs=20.5

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~   24 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQ   24 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999998743

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.00013  Score=56.00  Aligned_cols=27  Identities=26%  Similarity=0.325  Sum_probs=23.8

Q ss_pred             CCcEEEEECCCCccHHHHHHHHHcCCC
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      ++.+++|-|+-||||||+++.|+..+.
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            367899999999999999999998664

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.95  E-value=0.00021  Score=54.15  Aligned_cols=27  Identities=30%  Similarity=0.469  Sum_probs=23.9

Q ss_pred             CCcEEEEECCCCccHHHHHHHHHcCCC
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      +|.+++|-|+.||||||+++.|...+.
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~   27 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLE   27 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            588999999999999999999987553

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.00021  Score=54.49  Aligned_cols=28  Identities=25%  Similarity=0.386  Sum_probs=24.4

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcCCC
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      ++|-+++|-|+-||||||+.+.|...+.
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~   28 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEALC   28 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4688999999999999999999887553

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.94  E-value=0.00025  Score=54.11  Aligned_cols=42  Identities=24%  Similarity=0.335  Sum_probs=30.9

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcCCCCC-CceEEEECCEeC
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQRIQGD-VDGQILLNGLEV   63 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~-~~G~I~~~g~~~   63 (212)
                      .+|-++-|.|.+||||||+.+.|.-.+... ..-.+.++|..+
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~i   64 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI   64 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHH
Confidence            578899999999999999999987543210 123567887665

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=96.92  E-value=0.00019  Score=53.08  Aligned_cols=21  Identities=38%  Similarity=0.525  Sum_probs=19.8

Q ss_pred             EEEECCCCccHHHHHHHHHcC
Q psy8250          27 LAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        27 ~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      +||+|+..||||||++.|++.
T Consensus         8 IaiiG~~naGKSTL~n~L~~~   28 (179)
T d1wb1a4           8 LGIFGHIDHGKTTLSKVLTEI   28 (179)
T ss_dssp             EEEEECTTSSHHHHHHHHHTT
T ss_pred             EEEEeCCCCcHHHHHHHHHHh
Confidence            899999999999999999974

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.90  E-value=0.00023  Score=51.64  Aligned_cols=23  Identities=30%  Similarity=0.414  Sum_probs=19.5

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++++|++|+|||||++.+.+-.
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~~~   26 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIASGQ   26 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            36799999999999999886643

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.89  E-value=0.00022  Score=51.89  Aligned_cols=22  Identities=41%  Similarity=0.480  Sum_probs=20.1

Q ss_pred             EEEEECCCCccHHHHHHHHHcC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      .++|+|..|||||||++.|.+.
T Consensus        17 kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          17 KVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4889999999999999999884

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.88  E-value=0.00028  Score=51.96  Aligned_cols=23  Identities=30%  Similarity=0.644  Sum_probs=19.9

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .+.|+||.||||||+-+.|+-.+
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            36899999999999999998643

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.87  E-value=0.00024  Score=52.30  Aligned_cols=22  Identities=27%  Similarity=0.398  Sum_probs=19.3

Q ss_pred             EEEEECCCCccHHHHHHHHHcC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      .+.|+||.||||||..+.|+-.
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~   23 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEK   23 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4679999999999999999853

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.86  E-value=0.00027  Score=53.49  Aligned_cols=20  Identities=30%  Similarity=0.589  Sum_probs=18.7

Q ss_pred             EEEEECCCCccHHHHHHHHH
Q psy8250          26 LLAIMGPSGAGKTTLLACIS   45 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~   45 (212)
                      ++||.|+.||||||+.+++.
T Consensus         4 iIgITG~igSGKStv~~~l~   23 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFT   23 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68999999999999999885

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=96.85  E-value=0.00018  Score=55.25  Aligned_cols=24  Identities=25%  Similarity=0.542  Sum_probs=19.3

Q ss_pred             cEEEEECCCCccHHHHHHHHHcCC
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .+++++||+|+||||.+-=|+-.+
T Consensus        10 ~vi~lvGptGvGKTTTiAKLA~~~   33 (211)
T d2qy9a2          10 FVILMVGVNGVGKTTTIGKLARQF   33 (211)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
Confidence            589999999999998876666443

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.83  E-value=0.00025  Score=58.00  Aligned_cols=27  Identities=30%  Similarity=0.484  Sum_probs=22.7

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      ...-++||.||.|||||||++.+...+
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~~~~   78 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFGMLL   78 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence            346679999999999999999997543

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.81  E-value=0.0003  Score=53.85  Aligned_cols=23  Identities=35%  Similarity=0.621  Sum_probs=20.3

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .+.|.||+|+||||+.++|+..+
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~l   69 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALAREL   69 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHH
Confidence            47899999999999999998644

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.81  E-value=0.00038  Score=53.75  Aligned_cols=25  Identities=32%  Similarity=0.519  Sum_probs=22.0

Q ss_pred             cEEEEECCCCccHHHHHHHHHcCCC
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      ..+.|.||+|+||||+.++|+..+.
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~~~   77 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQELG   77 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHH
Confidence            4688999999999999999998653

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.79  E-value=0.00032  Score=53.41  Aligned_cols=26  Identities=27%  Similarity=0.484  Sum_probs=23.5

Q ss_pred             EcCCcEEEEECCCCccHHHHHHHHHc
Q psy8250          21 AESGSLLAIMGPSGAGKTTLLACISQ   46 (212)
Q Consensus        21 i~~Ge~~~iiGpnGaGKSTLl~~i~g   46 (212)
                      +++|+++.|.||.|||||||...++-
T Consensus        31 i~~G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          31 VETGSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             EESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred             CcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            78999999999999999999877753

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.78  E-value=0.00038  Score=51.33  Aligned_cols=22  Identities=36%  Similarity=0.696  Sum_probs=19.3

Q ss_pred             EEEEECCCCccHHHHHHHHHcC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      .+.|+||.||||||+.+.|+-.
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3678999999999999999863

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.78  E-value=0.00034  Score=53.45  Aligned_cols=32  Identities=28%  Similarity=0.442  Sum_probs=27.1

Q ss_pred             CCcEEEEECCCCccHHHHHHHHHcCCCCCCceEE
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQI   56 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I   56 (212)
                      +|.+++|-|+.||||||+.+.|+-.+..  .|.+
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~~--~~~~   33 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQP--NCKL   33 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTTT--SEEE
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHHh--CCEE
Confidence            6999999999999999999999877653  4543

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.75  E-value=0.00036  Score=50.93  Aligned_cols=21  Identities=38%  Similarity=0.618  Sum_probs=18.9

Q ss_pred             EEEECCCCccHHHHHHHHHcC
Q psy8250          27 LAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        27 ~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      ++|+|+.|+|||||++.+.+-
T Consensus         5 i~~vG~~~vGKSsLi~~~~~~   25 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVND   25 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            789999999999999998753

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.74  E-value=0.00043  Score=51.78  Aligned_cols=23  Identities=39%  Similarity=0.590  Sum_probs=20.2

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .+.|+||.||||||+-+.|+-.+
T Consensus         8 rIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           8 RAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHB
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999998643

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.73  E-value=0.00033  Score=56.76  Aligned_cols=24  Identities=21%  Similarity=0.430  Sum_probs=21.7

Q ss_pred             EEEEECCCCccHHHHHHHHHcCCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      ++||.|++||||||+.+.|..++.
T Consensus        82 iIGIaG~sgSGKSTla~~L~~lL~  105 (308)
T d1sq5a_          82 IISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             EEEEeCCCCCCCcHHHHHHHHHHh
Confidence            899999999999999999987664

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.73  E-value=0.0005  Score=50.26  Aligned_cols=28  Identities=39%  Similarity=0.475  Sum_probs=25.3

Q ss_pred             EcCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          21 AESGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        21 i~~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|.+++|-|+=|||||||.|.++.-+
T Consensus        30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCCeEEEEecCCCccHHHHHHHHHhhc
Confidence            4789999999999999999999998655

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.71  E-value=0.00031  Score=53.87  Aligned_cols=24  Identities=21%  Similarity=0.355  Sum_probs=15.5

Q ss_pred             CCcEEEEECCCCccHHHHHHHHHc
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACISQ   46 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~g   46 (212)
                      .-.+++++||+|+||||.+-=|+-
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA~   34 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLAY   34 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999988666664

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.71  E-value=0.0004  Score=53.63  Aligned_cols=27  Identities=11%  Similarity=0.277  Sum_probs=22.7

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      ..+.++.|.||.|+|||||++.++.-.
T Consensus        27 ~~~~~i~i~G~~G~GKTsLl~~~~~~~   53 (283)
T d2fnaa2          27 LRAPITLVLGLRRTGKSSIIKIGINEL   53 (283)
T ss_dssp             TCSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             ccCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence            357789999999999999999887533

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.71  E-value=0.00048  Score=52.61  Aligned_cols=27  Identities=30%  Similarity=0.383  Sum_probs=21.5

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      +...++.++||+|+||||.+-=|+-.+
T Consensus         8 ~~~~vi~lvGp~GvGKTTTiaKLA~~~   34 (207)
T d1ls1a2           8 KDRNLWFLVGLQGSGKTTTAAKLALYY   34 (207)
T ss_dssp             CSSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            345688999999999998877776544

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.70  E-value=0.0004  Score=50.56  Aligned_cols=21  Identities=33%  Similarity=0.521  Sum_probs=18.8

Q ss_pred             EEEECCCCccHHHHHHHHHcC
Q psy8250          27 LAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        27 ~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      ++++|+.|+|||||++.+.+-
T Consensus         8 i~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            789999999999999987653

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.68  E-value=0.00043  Score=52.85  Aligned_cols=22  Identities=27%  Similarity=0.724  Sum_probs=19.8

Q ss_pred             EEEECCCCccHHHHHHHHHcCC
Q psy8250          27 LAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        27 ~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      +.|.||+|+||||++++++..+
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHHH
Confidence            7899999999999999998753

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.67  E-value=0.00035  Score=58.58  Aligned_cols=22  Identities=23%  Similarity=0.508  Sum_probs=20.6

Q ss_pred             EEEECCCCccHHHHHHHHHcCC
Q psy8250          27 LAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        27 ~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      ++|+|.+|+|||||+|.|.|.-
T Consensus        59 Iai~G~~n~GKSSLiNaL~G~~   80 (400)
T d1tq4a_          59 VAVTGETGSGKSSFINTLRGIG   80 (400)
T ss_dssp             EEEEECTTSSHHHHHHHHHTCC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            8999999999999999999854

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=96.67  E-value=0.00039  Score=53.35  Aligned_cols=111  Identities=13%  Similarity=0.056  Sum_probs=58.6

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHHHHHHhhhccc
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDR  101 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~  101 (212)
                      .+-.+++++||+|+||||.+-=|+-.+..  .|               +.++++.=+..     .               
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLAa~~~~--~~---------------~kV~lit~Dt~-----R---------------   51 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLAKMFVD--EG---------------KSVVLAAADTF-----R---------------   51 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHHHH--TT---------------CCEEEEEECTT-----C---------------
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHH--CC---------------CceEEEeeccc-----c---------------
Confidence            34557899999999999886656543321  11               12455533321     0               


Q ss_pred             CCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC--CChhhHHHHHHHHHH
Q psy8250         102 NLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT--VDTLTVHEHMTLMAR  175 (212)
Q Consensus       102 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~--lD~~~~~~~~~~l~~  175 (212)
                          ....+....+.+.+++.-.......++  -.-.+-..+.+...+-+++|.|=|--  .|.....++..+.+.
T Consensus        52 ----~gA~eQL~~~a~~l~i~~~~~~~~~d~--~~~~~~~~~~~~~~~~d~ilIDTaGr~~~d~~~~~el~~~~~~  121 (213)
T d1vmaa2          52 ----AAAIEQLKIWGERVGATVISHSEGADP--AAVAFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRV  121 (213)
T ss_dssp             ----HHHHHHHHHHHHHHTCEEECCSTTCCH--HHHHHHHHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHH
T ss_pred             ----cchhHHHHHHhhhcCccccccCCCCcH--HHHHHHHHHHHHHcCCCEEEEeccccccchHHHHHHHHHHHhh
Confidence                011233445556666653322222222  22333344455667788888888765  355444444444433

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.66  E-value=0.00048  Score=52.20  Aligned_cols=21  Identities=29%  Similarity=0.599  Sum_probs=19.2

Q ss_pred             EEEEECCCCccHHHHHHHHHc
Q psy8250          26 LLAIMGPSGAGKTTLLACISQ   46 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g   46 (212)
                      ++||.|+.||||||..+++..
T Consensus         5 iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHHH
Confidence            789999999999999999863

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=96.63  E-value=0.00034  Score=51.03  Aligned_cols=22  Identities=36%  Similarity=0.563  Sum_probs=19.7

Q ss_pred             EEEEECCCCccHHHHHHHHHcC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      .++++|+.|+|||||++.+.+-
T Consensus        18 kI~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4889999999999999999764

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.00047  Score=50.45  Aligned_cols=21  Identities=33%  Similarity=0.714  Sum_probs=18.7

Q ss_pred             EEEECCCCccHHHHHHHHHcC
Q psy8250          27 LAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        27 ~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      ++++|+.|+|||||++.+.+-
T Consensus         7 i~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999987653

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.61  E-value=0.00025  Score=56.97  Aligned_cols=24  Identities=29%  Similarity=0.567  Sum_probs=18.5

Q ss_pred             EEEEECCCCccHHHHHHHHHcCCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      ++||.|+|||||||+.+.|...+.
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i~~   29 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQIFR   29 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHh
Confidence            799999999999999999877553

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=0.00045  Score=50.07  Aligned_cols=22  Identities=32%  Similarity=0.548  Sum_probs=19.4

Q ss_pred             EEEEECCCCccHHHHHHHHHcC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      .++++|++|+|||||++.+.+-
T Consensus         5 Ki~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3789999999999999988764

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=0.00063  Score=52.04  Aligned_cols=26  Identities=27%  Similarity=0.285  Sum_probs=23.7

Q ss_pred             EcCCcEEEEECCCCccHHHHHHHHHc
Q psy8250          21 AESGSLLAIMGPSGAGKTTLLACISQ   46 (212)
Q Consensus        21 i~~Ge~~~iiGpnGaGKSTLl~~i~g   46 (212)
                      +++|.++.|.||+|||||||.-.++.
T Consensus        34 ip~G~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          34 IESMAITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             BCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            79999999999999999999887763

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.61  E-value=0.00057  Score=51.58  Aligned_cols=25  Identities=28%  Similarity=0.304  Sum_probs=22.1

Q ss_pred             EcCCcEEEEECCCCccHHHHHHHHH
Q psy8250          21 AESGSLLAIMGPSGAGKTTLLACIS   45 (212)
Q Consensus        21 i~~Ge~~~iiGpnGaGKSTLl~~i~   45 (212)
                      +++|+++.|.|++|+|||||..-++
T Consensus        23 i~~G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          23 LPIGRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHH
Confidence            7899999999999999999975443

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=96.59  E-value=0.00039  Score=54.65  Aligned_cols=37  Identities=19%  Similarity=0.195  Sum_probs=29.2

Q ss_pred             CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHc
Q psy8250          10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQ   46 (212)
Q Consensus        10 ~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g   46 (212)
                      +.+-|+++..=+.+|+++.|.|++|+|||||+.-++-
T Consensus        21 G~~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             SCTTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CchhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            4445555544479999999999999999999887763

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.59  E-value=0.00058  Score=52.36  Aligned_cols=25  Identities=28%  Similarity=0.525  Sum_probs=22.4

Q ss_pred             EcCCcEEEEECCCCccHHHHHHHHH
Q psy8250          21 AESGSLLAIMGPSGAGKTTLLACIS   45 (212)
Q Consensus        21 i~~Ge~~~iiGpnGaGKSTLl~~i~   45 (212)
                      +++|+++.|.||+|||||||.--++
T Consensus        33 lp~G~~~li~G~pGsGKT~~~lq~~   57 (254)
T d1pzna2          33 IETQAITEVFGEFGSGKTQLAHTLA   57 (254)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHH
T ss_pred             ccCCEEEEEEcCCCCCHHHHHHHHH
Confidence            7899999999999999999977553

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.57  E-value=0.00065  Score=52.02  Aligned_cols=26  Identities=27%  Similarity=0.414  Sum_probs=23.7

Q ss_pred             EcCCcEEEEECCCCccHHHHHHHHHc
Q psy8250          21 AESGSLLAIMGPSGAGKTTLLACISQ   46 (212)
Q Consensus        21 i~~Ge~~~iiGpnGaGKSTLl~~i~g   46 (212)
                      +++|.++.|.||+|||||||..-++-
T Consensus        23 i~~gsl~li~G~pGsGKT~l~~qia~   48 (242)
T d1tf7a2          23 FFKDSIILATGATGTGKTLLVSRFVE   48 (242)
T ss_dssp             EESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            78999999999999999999877764

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.57  E-value=0.00059  Score=51.75  Aligned_cols=28  Identities=29%  Similarity=0.369  Sum_probs=24.4

Q ss_pred             EcCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          21 AESGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        21 i~~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      +++|+++.|.||+|+|||||.--++--.
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999987776433

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.55  E-value=0.00065  Score=49.09  Aligned_cols=20  Identities=15%  Similarity=0.521  Sum_probs=17.9

Q ss_pred             EEEECCCCccHHHHHHHHHc
Q psy8250          27 LAIMGPSGAGKTTLLACISQ   46 (212)
Q Consensus        27 ~~iiGpnGaGKSTLl~~i~g   46 (212)
                      ++++|+.|+|||||++-+.+
T Consensus         5 v~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987664

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.53  E-value=0.00063  Score=52.26  Aligned_cols=22  Identities=36%  Similarity=0.594  Sum_probs=20.1

Q ss_pred             EEEEECCCCccHHHHHHHHHcC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      ++||+|...||||||++.|.+.
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCccHHHHHHHHHhh
Confidence            5999999999999999999863

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.53  E-value=0.0007  Score=50.64  Aligned_cols=24  Identities=46%  Similarity=0.646  Sum_probs=21.0

Q ss_pred             EEEEECCCCccHHHHHHHHHcCCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      +++|-|+-||||||+++.|...+.
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~   25 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            578999999999999999987553

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.52  E-value=0.00067  Score=55.21  Aligned_cols=37  Identities=19%  Similarity=0.365  Sum_probs=26.3

Q ss_pred             CCcEEEEECCCCccHHHHHHHHHcCCC--CCCceEEEEC
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACISQRIQ--GDVDGQILLN   59 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~~--p~~~G~I~~~   59 (212)
                      ..-++||.||.|||||||+..+...+.  ...-|-|.+|
T Consensus        50 ~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavD   88 (323)
T d2qm8a1          50 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVD   88 (323)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecc
Confidence            455799999999999999999875432  1124555554

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.0007  Score=49.88  Aligned_cols=22  Identities=41%  Similarity=0.545  Sum_probs=19.5

Q ss_pred             EEEECCCCccHHHHHHHHHcCC
Q psy8250          27 LAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        27 ~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      ++|+|+.|+|||||++.+.+-.
T Consensus         8 i~ivG~~~vGKTsLi~~l~~~~   29 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTDNK   29 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHCSC
T ss_pred             EEEECCCCcCHHHHHHHHhcCC
Confidence            7899999999999999988643

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.50  E-value=0.00065  Score=52.04  Aligned_cols=25  Identities=40%  Similarity=0.622  Sum_probs=21.8

Q ss_pred             EEEEECCCCccHHHHHHHHHcCCCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRIQG   50 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~~p   50 (212)
                      .+.+.||.|+||||+.++|+..+..
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~~~~   61 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASELQT   61 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred             eEEEECCCCCcHHHHHHHHHhccCC
Confidence            4779999999999999999986654

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.00077  Score=48.90  Aligned_cols=21  Identities=29%  Similarity=0.594  Sum_probs=18.6

Q ss_pred             EEEEECCCCccHHHHHHHHHc
Q psy8250          26 LLAIMGPSGAGKTTLLACISQ   46 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g   46 (212)
                      .++++|..|+|||||++.+.+
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            378999999999999998765

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.47  E-value=0.0009  Score=48.78  Aligned_cols=20  Identities=25%  Similarity=0.584  Sum_probs=17.7

Q ss_pred             EEEECCCCccHHHHHHHHHc
Q psy8250          27 LAIMGPSGAGKTTLLACISQ   46 (212)
Q Consensus        27 ~~iiGpnGaGKSTLl~~i~g   46 (212)
                      ++++|++|+|||||++.+..
T Consensus         9 I~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999977654

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.47  E-value=0.00058  Score=49.42  Aligned_cols=22  Identities=32%  Similarity=0.572  Sum_probs=19.2

Q ss_pred             EEEECCCCccHHHHHHHHHcCC
Q psy8250          27 LAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        27 ~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      ++++|++|+|||||++.+.+-.
T Consensus         5 i~vvG~~~vGKTSli~~l~~~~   26 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVEDK   26 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            7899999999999999877643

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.0007  Score=49.41  Aligned_cols=22  Identities=32%  Similarity=0.587  Sum_probs=19.0

Q ss_pred             EEEECCCCccHHHHHHHHHcCC
Q psy8250          27 LAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        27 ~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      ++++|++|+|||||++.+.+-.
T Consensus         6 ivvvG~~~vGKTsli~r~~~~~   27 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTDKR   27 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHhcCC
Confidence            7899999999999999876543

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.46  E-value=0.0007  Score=57.47  Aligned_cols=44  Identities=20%  Similarity=0.440  Sum_probs=29.7

Q ss_pred             EEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQH   78 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~   78 (212)
                      -+.++||+|+|||-|.|.|++.+.-+   -+..+...++.      +|||-.+
T Consensus        51 NILliGPTGvGKTlLAr~LAk~l~VP---Fv~~daT~fTe------aGYvG~D   94 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAKLANAP---FIKVEATKFTE------VGYVGKE   94 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHTTCC---EEEEEGGGGC----------CCCC
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCCC---EEEeecceeee------cceeecc
Confidence            57899999999999999999987543   35555444432      4666554

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.44  E-value=0.00073  Score=51.85  Aligned_cols=24  Identities=42%  Similarity=0.703  Sum_probs=21.1

Q ss_pred             EEEEECCCCccHHHHHHHHHcCCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      .+.+.||.|+||||+.+++++.+.
T Consensus        37 ~~Ll~GPpG~GKTtla~~la~~~~   60 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLAHVIAHELG   60 (239)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            467999999999999999998654

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.44  E-value=0.00069  Score=54.62  Aligned_cols=38  Identities=18%  Similarity=0.365  Sum_probs=28.0

Q ss_pred             CCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeC
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV   63 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~   63 (212)
                      ++.-+.++||+|+|||+|.|+|+..+..   --+.+++-++
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~~~---~~~~i~~s~~   85 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLANA---PFIKVEATKF   85 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHTC---CEEEEEGGGG
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhcccc---chhccccccc
Confidence            3455679999999999999999986542   2456665444

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.00084  Score=48.77  Aligned_cols=23  Identities=22%  Similarity=0.433  Sum_probs=19.6

Q ss_pred             EEEECCCCccHHHHHHHHHcCCC
Q psy8250          27 LAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        27 ~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      ++++|+.|+|||||++.+.+...
T Consensus         4 i~lvG~~~vGKTsLi~~~~~~~~   26 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGGVED   26 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC--
T ss_pred             EEEECCCCcCHHHHHHHHhCCcc
Confidence            78999999999999999988643

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.41  E-value=0.00089  Score=49.26  Aligned_cols=21  Identities=38%  Similarity=0.670  Sum_probs=18.6

Q ss_pred             EEEECCCCccHHHHHHHHHcC
Q psy8250          27 LAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        27 ~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      ++++|..|+|||||++.+.+-
T Consensus         5 v~vvG~~~vGKSSLi~~l~~~   25 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVNK   25 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999987753

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.41  E-value=0.00066  Score=49.15  Aligned_cols=21  Identities=29%  Similarity=0.441  Sum_probs=18.9

Q ss_pred             EEEEECCCCccHHHHHHHHHc
Q psy8250          26 LLAIMGPSGAGKTTLLACISQ   46 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g   46 (212)
                      .++|+|+.|+|||||++.+.+
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            588999999999999998764

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.37  E-value=0.001  Score=48.13  Aligned_cols=22  Identities=23%  Similarity=0.472  Sum_probs=19.3

Q ss_pred             EEEEECCCCccHHHHHHHHHcC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      .++|+|+.|+|||||++.+.+-
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999888764

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.37  E-value=0.00073  Score=49.14  Aligned_cols=21  Identities=33%  Similarity=0.509  Sum_probs=18.6

Q ss_pred             EEEEECCCCccHHHHHHHHHc
Q psy8250          26 LLAIMGPSGAGKTTLLACISQ   46 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g   46 (212)
                      .++|+|.+|+|||||++.+.+
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            488999999999999997665

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=96.36  E-value=0.00042  Score=50.95  Aligned_cols=22  Identities=41%  Similarity=0.566  Sum_probs=19.2

Q ss_pred             EEEEECCCCccHHHHHHHHHcC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      .++++|++|+|||||++.+.+-
T Consensus        19 KI~lvG~~~vGKTsLi~~l~~~   40 (182)
T d1moza_          19 RILILGLDGAGKTTILYRLQIG   40 (182)
T ss_dssp             EEEEEEETTSSHHHHHHHTCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4779999999999999998653

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.0008  Score=48.92  Aligned_cols=21  Identities=33%  Similarity=0.646  Sum_probs=19.1

Q ss_pred             EEEECCCCccHHHHHHHHHcC
Q psy8250          27 LAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        27 ~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      ++|+|+.|+|||||++.+.+-
T Consensus         8 i~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988763

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.35  E-value=0.00094  Score=48.06  Aligned_cols=21  Identities=29%  Similarity=0.417  Sum_probs=18.6

Q ss_pred             EEEECCCCccHHHHHHHHHcC
Q psy8250          27 LAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        27 ~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      ++++|..|+|||||++.+.+-
T Consensus         5 v~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999987653

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=96.35  E-value=0.00052  Score=54.29  Aligned_cols=43  Identities=23%  Similarity=0.305  Sum_probs=30.9

Q ss_pred             EEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEe
Q psy8250          20 IAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLE   62 (212)
Q Consensus        20 ~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~   62 (212)
                      =++.|.++-|.||+|||||||.-.++-.......--++++...
T Consensus        50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~   92 (263)
T d1u94a1          50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH   92 (263)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcccc
Confidence            3688999999999999999998766654432123346666654

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.34  E-value=0.001  Score=48.05  Aligned_cols=21  Identities=33%  Similarity=0.626  Sum_probs=18.6

Q ss_pred             EEEECCCCccHHHHHHHHHcC
Q psy8250          27 LAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        27 ~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      ++|+|..|+|||||++.+.+-
T Consensus         7 ivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999887653

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.33  E-value=0.001  Score=53.15  Aligned_cols=22  Identities=27%  Similarity=0.457  Sum_probs=19.2

Q ss_pred             EEEEECCCCccHHHHHHHHHcC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      ++||-|+.|||||||.+.|.-.
T Consensus        29 iIGi~G~qGSGKSTl~~~l~~~   50 (286)
T d1odfa_          29 FIFFSGPQGSGKSFTSIQIYNH   50 (286)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHH
Confidence            7899999999999999877543

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.32  E-value=0.0012  Score=51.76  Aligned_cols=39  Identities=23%  Similarity=0.371  Sum_probs=28.3

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeC
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV   63 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~   63 (212)
                      ....-+.+.||+|+|||++.+.|+..+..+   -+.++..++
T Consensus        43 ~~~~~iLL~GppGtGKT~la~~iA~~~~~~---~~~i~~~~l   81 (256)
T d1lv7a_          43 KIPKGVLMVGPPGTGKTLLAKAIAGEAKVP---FFTISGSDF   81 (256)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHHHTCC---EEEECSCSS
T ss_pred             CCCCeEEeeCCCCCCccHHHHHHHHHcCCC---EEEEEhHHh
Confidence            344557899999999999999999865432   355665444

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.30  E-value=0.0013  Score=50.52  Aligned_cols=26  Identities=23%  Similarity=0.360  Sum_probs=22.7

Q ss_pred             cEEEEECCCCccHHHHHHHHHcCCCC
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQRIQG   50 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g~~~p   50 (212)
                      ..+.|.||.|+||||+++.++..+..
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~~l~~   69 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWELYKD   69 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHhc
Confidence            47889999999999999999976643

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.28  E-value=0.00095  Score=48.03  Aligned_cols=22  Identities=27%  Similarity=0.443  Sum_probs=19.3

Q ss_pred             EEEEECCCCccHHHHHHHHHcC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      .++++|..|+|||||++.+.+-
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMYD   23 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999988753

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.0016  Score=47.44  Aligned_cols=22  Identities=27%  Similarity=0.490  Sum_probs=19.9

Q ss_pred             EEEECCCCccHHHHHHHHHcCC
Q psy8250          27 LAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        27 ~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      ++++|..|+|||||++.+.+..
T Consensus         6 v~lvG~~~vGKTsLi~~~~~~~   27 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAGVH   27 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEECCCCcCHHHHHHHHHhCc
Confidence            7899999999999999998754

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.25  E-value=0.0013  Score=47.62  Aligned_cols=20  Identities=20%  Similarity=0.606  Sum_probs=18.3

Q ss_pred             EEEECCCCccHHHHHHHHHc
Q psy8250          27 LAIMGPSGAGKTTLLACISQ   46 (212)
Q Consensus        27 ~~iiGpnGaGKSTLl~~i~g   46 (212)
                      ++|+|..|+|||||++-+..
T Consensus         7 i~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998875

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.0012  Score=48.20  Aligned_cols=22  Identities=36%  Similarity=0.652  Sum_probs=19.4

Q ss_pred             EEEECCCCccHHHHHHHHHcCC
Q psy8250          27 LAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        27 ~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      ++++|..|+|||||++.+.+-.
T Consensus        10 i~vvG~~~vGKTsli~~l~~~~   31 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTDDT   31 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            7899999999999999887643

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.22  E-value=0.0022  Score=47.56  Aligned_cols=31  Identities=19%  Similarity=0.125  Sum_probs=24.0

Q ss_pred             eeeeEEEEcCCcEEEEECCCCccHHHHHHHHH
Q psy8250          14 KESLSGIAESGSLLAIMGPSGAGKTTLLACIS   45 (212)
Q Consensus        14 l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~   45 (212)
                      ++.-.+.+ .|.-+.|.||||+|||||...+.
T Consensus         6 ~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~   36 (177)
T d1knxa2           6 IHGVLLEV-FGVGVLLTGRSGIGKSECALDLI   36 (177)
T ss_dssp             EEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred             EEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence            44444445 78889999999999999987664

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.21  E-value=0.00098  Score=48.70  Aligned_cols=23  Identities=39%  Similarity=0.473  Sum_probs=19.4

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|+|.+|+|||||++.+.+-.
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~~   26 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKDQ   26 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            46899999999999998877643

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.21  E-value=0.00097  Score=49.64  Aligned_cols=21  Identities=43%  Similarity=0.665  Sum_probs=18.7

Q ss_pred             EEEECCCCccHHHHHHHHHcC
Q psy8250          27 LAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        27 ~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      ++|+|+.|+|||||++.+.+-
T Consensus         9 ivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhhC
Confidence            889999999999999987753

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.20  E-value=0.0012  Score=50.05  Aligned_cols=22  Identities=36%  Similarity=0.735  Sum_probs=19.3

Q ss_pred             EEEECCCCccHHHHHHHHHcCC
Q psy8250          27 LAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        27 ~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      +.|.||+|+||||+.++++..+
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~l   60 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHEL   60 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCchhhHHHHHHHH
Confidence            6799999999999999987644

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.19  E-value=0.0012  Score=51.51  Aligned_cols=23  Identities=35%  Similarity=0.498  Sum_probs=20.5

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      -+.|.||.|+|||++.+.|+...
T Consensus        42 ~vLL~GppGtGKT~la~alA~~~   64 (246)
T d1d2na_          42 SVLLEGPPHSGKTALAAKIAEES   64 (246)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhhcc
Confidence            47799999999999999999754

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=96.17  E-value=0.00068  Score=49.42  Aligned_cols=23  Identities=30%  Similarity=0.398  Sum_probs=19.8

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .+.++|++|+|||||++.+.+-.
T Consensus        14 kIvlvG~~~vGKTSli~rl~~~~   36 (173)
T d1e0sa_          14 RILMLGLDAAGKTTILYKLKLGQ   36 (173)
T ss_dssp             EEEEEEETTSSHHHHHHHTTCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47799999999999999987544

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.0015  Score=47.19  Aligned_cols=20  Identities=25%  Similarity=0.491  Sum_probs=18.0

Q ss_pred             EEEECCCCccHHHHHHHHHc
Q psy8250          27 LAIMGPSGAGKTTLLACISQ   46 (212)
Q Consensus        27 ~~iiGpnGaGKSTLl~~i~g   46 (212)
                      ++|+|..|+|||||++.+.+
T Consensus         6 ivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999997764

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.16  E-value=0.0011  Score=50.93  Aligned_cols=22  Identities=36%  Similarity=0.643  Sum_probs=19.6

Q ss_pred             EEEECCCCccHHHHHHHHHcCC
Q psy8250          27 LAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        27 ~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      +.|.||.|+||||+.++++..+
T Consensus        36 lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          36 LLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhh
Confidence            6799999999999999998653

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.15  E-value=0.0026  Score=47.17  Aligned_cols=25  Identities=28%  Similarity=0.272  Sum_probs=20.7

Q ss_pred             EcCCcEEEEECCCCccHHHHHHHHH
Q psy8250          21 AESGSLLAIMGPSGAGKTTLLACIS   45 (212)
Q Consensus        21 i~~Ge~~~iiGpnGaGKSTLl~~i~   45 (212)
                      .-.|.-+.|.|+||+|||||.-.+.
T Consensus        11 ~~~g~gvl~~G~sG~GKStlal~l~   35 (176)
T d1kkma_          11 DIYGLGVLITGDSGVGKSETALELV   35 (176)
T ss_dssp             EETTEEEEEECCTTSCHHHHHHHHH
T ss_pred             EECCEEEEEEeCCCCCHHHHHHHHH
Confidence            3457789999999999999987654

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.14  E-value=0.0014  Score=51.64  Aligned_cols=29  Identities=31%  Similarity=0.467  Sum_probs=24.2

Q ss_pred             EcCCcEEEEECCCCccHHHHHHHHHcCCC
Q psy8250          21 AESGSLLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        21 i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      +.+..-+.|.||+|+|||+|.+++++.+.
T Consensus        38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~   66 (265)
T d1r7ra3          38 MTPSKGVLFYGPPGCGKTLLAKAIANECQ   66 (265)
T ss_dssp             CCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred             CCCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence            34455688999999999999999998664

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.11  E-value=0.0016  Score=47.12  Aligned_cols=22  Identities=18%  Similarity=0.454  Sum_probs=18.8

Q ss_pred             EEEEECCCCccHHHHHHHHHcC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      .++++|..|+|||||++-+.+-
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999976653

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=96.11  E-value=0.0015  Score=52.31  Aligned_cols=30  Identities=40%  Similarity=0.442  Sum_probs=26.3

Q ss_pred             EEEcCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          19 GIAESGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        19 ~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      +.|-.|+..+|+|++|+|||||+..|+...
T Consensus        38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             SCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             ccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence            457899999999999999999999988643

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.08  E-value=0.0016  Score=47.24  Aligned_cols=21  Identities=38%  Similarity=0.678  Sum_probs=18.8

Q ss_pred             EEEECCCCccHHHHHHHHHcC
Q psy8250          27 LAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        27 ~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      ++++|+.|+|||||++-+.+-
T Consensus         5 i~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999988753

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.08  E-value=0.0015  Score=47.26  Aligned_cols=23  Identities=26%  Similarity=0.440  Sum_probs=19.5

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++++|..|+|||||++.+.+-.
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~~   30 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVKGQ   30 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            46899999999999999887433

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.07  E-value=0.0015  Score=49.45  Aligned_cols=22  Identities=36%  Similarity=0.774  Sum_probs=19.7

Q ss_pred             EEEECCCCccHHHHHHHHHcCC
Q psy8250          27 LAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        27 ~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      +-|.||.|+||||+.++++..+
T Consensus        38 lLl~Gp~G~GKttl~~~la~~l   59 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALAREI   59 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHHHHh
Confidence            6799999999999999998753

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.0013  Score=47.81  Aligned_cols=20  Identities=30%  Similarity=0.615  Sum_probs=18.3

Q ss_pred             EEEECCCCccHHHHHHHHHc
Q psy8250          27 LAIMGPSGAGKTTLLACISQ   46 (212)
Q Consensus        27 ~~iiGpnGaGKSTLl~~i~g   46 (212)
                      ++++|..|+|||||++.+.+
T Consensus         8 I~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999998764

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.04  E-value=0.0018  Score=47.53  Aligned_cols=22  Identities=27%  Similarity=0.430  Sum_probs=19.1

Q ss_pred             EEEEECCCCccHHHHHHHHHcC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      .++|+|..|+|||||++.+.+-
T Consensus         7 KivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999887653

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.03  E-value=0.0014  Score=47.77  Aligned_cols=22  Identities=32%  Similarity=0.484  Sum_probs=18.9

Q ss_pred             EEEEECCCCccHHHHHHHHHcC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      .++|+|..|+|||||++-+.+-
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999887653

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.01  E-value=0.0017  Score=50.71  Aligned_cols=24  Identities=29%  Similarity=0.569  Sum_probs=21.3

Q ss_pred             EEEEECCCCccHHHHHHHHHcCCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      -+.+.||.|+|||+|.+.|+....
T Consensus        44 giLl~GppGtGKT~la~aia~~~~   67 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAGEAR   67 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             eEEEecCCCCChhHHHHHHHHHcC
Confidence            478999999999999999998653

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.00  E-value=0.0018  Score=47.00  Aligned_cols=20  Identities=35%  Similarity=0.569  Sum_probs=18.0

Q ss_pred             EEEECCCCccHHHHHHHHHc
Q psy8250          27 LAIMGPSGAGKTTLLACISQ   46 (212)
Q Consensus        27 ~~iiGpnGaGKSTLl~~i~g   46 (212)
                      +.++|..|+|||||++.+.+
T Consensus         7 i~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67999999999999998765

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.00  E-value=0.00096  Score=52.91  Aligned_cols=42  Identities=24%  Similarity=0.378  Sum_probs=30.1

Q ss_pred             EEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceE-EEECCEe
Q psy8250          20 IAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQ-ILLNGLE   62 (212)
Q Consensus        20 ~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~-I~~~g~~   62 (212)
                      =++.|.++-|.||+|+|||||.-.++..... ..|. |++|...
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~-~g~~~vyIDtE~   98 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAVANAQA-AGGVAAFIDAEH   98 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHHHHHHH-TTCEEEEEESSC
T ss_pred             CcccceeEEEecCCCcHHHHHHHHHHHHHhc-CCCEEEEEECCc
Confidence            3789999999999999999996555543332 2344 5666654

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.99  E-value=0.0018  Score=46.91  Aligned_cols=20  Identities=40%  Similarity=0.667  Sum_probs=18.0

Q ss_pred             EEEECCCCccHHHHHHHHHc
Q psy8250          27 LAIMGPSGAGKTTLLACISQ   46 (212)
Q Consensus        27 ~~iiGpnGaGKSTLl~~i~g   46 (212)
                      ++|+|+.|+|||||++.+.+
T Consensus         9 i~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999997654

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.0013  Score=52.25  Aligned_cols=24  Identities=25%  Similarity=0.407  Sum_probs=21.8

Q ss_pred             cEEEEECCCCccHHHHHHHHHcCC
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .+++|+||-++||||||+.|.|..
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             EEEEEECCCCCCHHHHHHHHcCCC
Confidence            479999999999999999999854

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.97  E-value=0.0012  Score=51.00  Aligned_cols=23  Identities=35%  Similarity=0.560  Sum_probs=19.3

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      ++.|.||.|+||||+++.++..+
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHH
Confidence            35567999999999999998754

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.95  E-value=0.002  Score=47.45  Aligned_cols=28  Identities=21%  Similarity=0.385  Sum_probs=21.2

Q ss_pred             EEEEECCCCccHHHHHHHHHcC--CCCCCce
Q psy8250          26 LLAIMGPSGAGKTTLLACISQR--IQGDVDG   54 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~--~~p~~~G   54 (212)
                      .+.|+|.+|+|||||++-+.-.  ..| +.|
T Consensus         4 KivllG~~~vGKTsll~r~~f~~~~~p-TiG   33 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQMRIIHGQDP-TKG   33 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHSCCC-CSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCC-eee
Confidence            4789999999999999988322  235 566

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.95  E-value=0.0019  Score=53.96  Aligned_cols=28  Identities=29%  Similarity=0.535  Sum_probs=23.9

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcCCC
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      .++-++.|.||.||||||++..+...+.
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~  183 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQELN  183 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhhhhc
Confidence            4566899999999999999999987654

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.93  E-value=0.00092  Score=48.69  Aligned_cols=22  Identities=32%  Similarity=0.465  Sum_probs=17.8

Q ss_pred             EEEEECCCCccHHHHHHHHHcC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      .++++|+.|+|||||++.+++-
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC--
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999976543

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.92  E-value=0.002  Score=47.28  Aligned_cols=22  Identities=23%  Similarity=0.453  Sum_probs=19.1

Q ss_pred             EEEEECCCCccHHHHHHHHHcC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      .++++|..|+|||||++.+.+-
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999977664

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.91  E-value=0.0012  Score=48.11  Aligned_cols=20  Identities=45%  Similarity=0.682  Sum_probs=8.6

Q ss_pred             EEEECCCCccHHHHHHHHHc
Q psy8250          27 LAIMGPSGAGKTTLLACISQ   46 (212)
Q Consensus        27 ~~iiGpnGaGKSTLl~~i~g   46 (212)
                      ++++|..|+|||||++.+++
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEECCCCC-----------
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987665

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.89  E-value=0.0023  Score=48.66  Aligned_cols=28  Identities=21%  Similarity=0.418  Sum_probs=21.3

Q ss_pred             EEEEECCCCccHHHHHHHHH-cCCCCCCce
Q psy8250          26 LLAIMGPSGAGKTTLLACIS-QRIQGDVDG   54 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~-g~~~p~~~G   54 (212)
                      .+.|+|.+|+|||||++-+. +-..| +-|
T Consensus         8 KilllG~~~vGKTsll~~~~~~~~~p-TiG   36 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMRILHVVL-TSG   36 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCC-CCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCcCC-CCC
Confidence            47899999999999998764 33345 455

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=95.88  E-value=0.0023  Score=46.29  Aligned_cols=21  Identities=24%  Similarity=0.414  Sum_probs=18.5

Q ss_pred             EEEEECCCCccHHHHHHHHHc
Q psy8250          26 LLAIMGPSGAGKTTLLACISQ   46 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g   46 (212)
                      .++|+|..|+|||||++.+.+
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998754

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=95.85  E-value=0.0024  Score=49.64  Aligned_cols=25  Identities=32%  Similarity=0.567  Sum_probs=22.0

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHc
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQ   46 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g   46 (212)
                      -+|+++.|.|+.|+|||||+-.|+-
T Consensus        27 ~pg~~~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          27 VAGTVGALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCcEEEEEeCCCCCHHHHHHHHHH
Confidence            4699999999999999999877764

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=95.85  E-value=0.001  Score=52.66  Aligned_cols=41  Identities=29%  Similarity=0.458  Sum_probs=31.0

Q ss_pred             EcCCcEEEEECCCCccHHHHHHHHHcCCCCCCce-EEEECCEe
Q psy8250          21 AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDG-QILLNGLE   62 (212)
Q Consensus        21 i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G-~I~~~g~~   62 (212)
                      ++.|.++-|-||+|||||||.-.++...+. ..| .+++|.+.
T Consensus        54 ip~g~itei~G~~~sGKT~l~l~~~~~aqk-~g~~v~yiDtE~   95 (268)
T d1xp8a1          54 IPRGRITEIYGPESGGKTTLALAIVAQAQK-AGGTCAFIDAEH   95 (268)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEEESSC
T ss_pred             ccCceEEEEecCCccchHHHHHHHHHHHHh-CCCEEEEEECCc
Confidence            688999999999999999998887765443 133 45666543

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.82  E-value=0.0035  Score=46.09  Aligned_cols=27  Identities=26%  Similarity=0.239  Sum_probs=21.5

Q ss_pred             EEEcCCcEEEEECCCCccHHHHHHHHH
Q psy8250          19 GIAESGSLLAIMGPSGAGKTTLLACIS   45 (212)
Q Consensus        19 ~~i~~Ge~~~iiGpnGaGKSTLl~~i~   45 (212)
                      +-.-.|.-+.|.|++|+|||||.-.+.
T Consensus        10 ~v~~~g~gvli~G~sg~GKS~la~~l~   36 (169)
T d1ko7a2          10 LVDVYGVGVLITGDSGIGKSETALELI   36 (169)
T ss_dssp             EEEETTEEEEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCEEEEEEeCCCCCHHHHHHHHH
Confidence            334567889999999999999875554

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.80  E-value=0.0028  Score=49.55  Aligned_cols=24  Identities=25%  Similarity=0.526  Sum_probs=20.9

Q ss_pred             EEEEECCCCccHHHHHHHHHcCCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      -+.|.||.|+|||+|.+.++....
T Consensus        40 giLL~GppGtGKT~l~~ala~~~~   63 (258)
T d1e32a2          40 GILLYGPPGTGKTLIARAVANETG   63 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             eeEEecCCCCCchHHHHHHHHHhC
Confidence            377999999999999999998543

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=95.79  E-value=0.0026  Score=47.33  Aligned_cols=22  Identities=27%  Similarity=0.430  Sum_probs=20.2

Q ss_pred             EEEECCCCccHHHHHHHHHcCC
Q psy8250          27 LAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        27 ~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      +||+|.-.+|||||++.|+|..
T Consensus         8 IaiiGhvd~GKSTL~~~L~g~~   29 (195)
T d1kk1a3           8 IGMVGHVDHGKTTLTKALTGVW   29 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEeccCCcHHHHHHHHHhhh
Confidence            7999999999999999999854

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.78  E-value=0.0028  Score=48.46  Aligned_cols=22  Identities=27%  Similarity=0.342  Sum_probs=19.8

Q ss_pred             cEEEEECCCCccHHHHHHHHHc
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQ   46 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g   46 (212)
                      .++||.|+-||||||..+.|..
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3789999999999999999864

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.77  E-value=0.0025  Score=45.90  Aligned_cols=21  Identities=33%  Similarity=0.605  Sum_probs=18.5

Q ss_pred             EEEECCCCccHHHHHHHHHcC
Q psy8250          27 LAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        27 ~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      ++++|..|+|||||++-+..-
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            789999999999999987654

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.71  E-value=0.0014  Score=52.97  Aligned_cols=26  Identities=19%  Similarity=0.409  Sum_probs=22.9

Q ss_pred             cEEEEECCCCccHHHHHHHHHcCCCC
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQRIQG   50 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g~~~p   50 (212)
                      --+.|+||.|+|||||.|.+++++++
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~iLp~   54 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAALLPE   54 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred             CeEEEECCCCccHHHHHHHHHHhCCC
Confidence            35789999999999999999998854

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.71  E-value=0.0026  Score=46.76  Aligned_cols=20  Identities=30%  Similarity=0.509  Sum_probs=18.0

Q ss_pred             EEEECCCCccHHHHHHHHHc
Q psy8250          27 LAIMGPSGAGKTTLLACISQ   46 (212)
Q Consensus        27 ~~iiGpnGaGKSTLl~~i~g   46 (212)
                      ++|+|..|+|||||++.+..
T Consensus        12 i~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhh
Confidence            78999999999999988664

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.69  E-value=0.0033  Score=45.81  Aligned_cols=28  Identities=21%  Similarity=0.372  Sum_probs=22.5

Q ss_pred             EEEEECCCCccHHHHHHHHHcCCCCCCce
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRIQGDVDG   54 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~~p~~~G   54 (212)
                      .+.++|..|+|||||++-+.....| +.|
T Consensus         4 KivllG~~~vGKTsl~~r~~~~~~~-t~~   31 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKIIHEA-GTG   31 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHSC-CCS
T ss_pred             EEEEECCCCCCHHHHHHHHhhCCCC-Ccc
Confidence            3789999999999999988665555 355

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=95.63  E-value=0.0025  Score=50.76  Aligned_cols=24  Identities=25%  Similarity=0.443  Sum_probs=21.6

Q ss_pred             EEEEECCCCccHHHHHHHHHcCCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      .++++|.-.||||||+++|+|.-.
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG~~~   49 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVGRDF   49 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred             eEEEEeCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999999653

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.61  E-value=0.003  Score=46.29  Aligned_cols=21  Identities=33%  Similarity=0.585  Sum_probs=17.8

Q ss_pred             EEEEECCCCccHHHHHHHHHc
Q psy8250          26 LLAIMGPSGAGKTTLLACISQ   46 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g   46 (212)
                      .++++|.+|+|||||++-+..
T Consensus         4 KivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999976654

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.60  E-value=0.0029  Score=48.24  Aligned_cols=25  Identities=24%  Similarity=0.396  Sum_probs=21.9

Q ss_pred             cEEEEECCCCccHHHHHHHHHcCCC
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      .+++|=|+-||||||+++.|.-.+.
T Consensus         3 k~IviEG~~GsGKST~~~~L~~~l~   27 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHh
Confidence            4788999999999999999987654

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.58  E-value=0.0027  Score=50.91  Aligned_cols=22  Identities=18%  Similarity=0.419  Sum_probs=19.4

Q ss_pred             EEEECCCCccHHHHHHHHHcCC
Q psy8250          27 LAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        27 ~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      +||+|...+|||||++.|+|.-
T Consensus         3 v~lvG~pn~GKStlfn~lt~~~   24 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAATLVD   24 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHHC--
T ss_pred             EeEECCCCCCHHHHHHHHHCCC
Confidence            7999999999999999998854

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.58  E-value=0.0026  Score=50.37  Aligned_cols=23  Identities=30%  Similarity=0.479  Sum_probs=21.1

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++++|.-.||||||+++|+|.-
T Consensus        28 ~ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          28 QIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             eEEEEcCCCCCHHHHHHHHhCCC
Confidence            38899999999999999999965

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.54  E-value=0.0028  Score=46.85  Aligned_cols=23  Identities=26%  Similarity=0.381  Sum_probs=18.8

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++++|+.|+|||||++.+.+-.
T Consensus         5 KvvllG~~~vGKTSli~r~~~~~   27 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTTNK   27 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            37899999999999997765433

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=95.47  E-value=0.0028  Score=50.47  Aligned_cols=22  Identities=27%  Similarity=0.490  Sum_probs=20.6

Q ss_pred             EEEEECCCCccHHHHHHHHHcC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      .+||||...||||||+++|++-
T Consensus        12 kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1          12 KTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            4999999999999999999975

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.43  E-value=0.0046  Score=49.77  Aligned_cols=35  Identities=20%  Similarity=0.284  Sum_probs=26.3

Q ss_pred             CcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCE
Q psy8250          24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGL   61 (212)
Q Consensus        24 Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~   61 (212)
                      ...+.++||+|+|||.|.+.|+-.+.   .--|.++-.
T Consensus        52 ~~~~lf~Gp~GvGKT~lak~la~~l~---~~~i~~d~s   86 (315)
T d1r6bx3          52 VGSFLFAGPTGVGKTEVTVQLSKALG---IELLRFDMS   86 (315)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHT---CEEEEEEGG
T ss_pred             ceEEEEECCCcchhHHHHHHHHhhcc---CCeeEeccc
Confidence            34688999999999999999998653   224555533

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.16  E-value=0.004  Score=47.58  Aligned_cols=22  Identities=45%  Similarity=0.533  Sum_probs=19.4

Q ss_pred             EEEEECCCCccHHHHHHHHHcC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      ++.|.|.=|||||||++-+...
T Consensus         5 v~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEeeCCCCCHHHHHHHHHhc
Confidence            6789999999999999998763

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.09  E-value=0.0062  Score=50.03  Aligned_cols=30  Identities=27%  Similarity=0.275  Sum_probs=26.4

Q ss_pred             EEcCCcEEEEECCCCccHHHHHHHHHcCCC
Q psy8250          20 IAESGSLLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        20 ~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      .++++.++.+.||.|+||||+.+.|++.+.
T Consensus       150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~  179 (362)
T d1svma_         150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG  179 (362)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            357888999999999999999999998653

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=95.09  E-value=0.0055  Score=48.22  Aligned_cols=23  Identities=26%  Similarity=0.413  Sum_probs=20.7

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .+||||-..+|||||++.|++.-
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~~~   26 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTKAG   26 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHTC
T ss_pred             eEEEECCCCCCHHHHHHHHHCCC
Confidence            58999999999999999999653

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=95.01  E-value=0.0052  Score=48.44  Aligned_cols=20  Identities=40%  Similarity=0.672  Sum_probs=18.2

Q ss_pred             EEEEECCCCccHHHHHHHHH
Q psy8250          26 LLAIMGPSGAGKTTLLACIS   45 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~   45 (212)
                      .++|+|+.|+|||||+..|.
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll   23 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALL   23 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHH
Confidence            47999999999999999983

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.99  E-value=0.0055  Score=44.73  Aligned_cols=22  Identities=23%  Similarity=0.418  Sum_probs=18.8

Q ss_pred             EEEEECCCCccHHHHHHHHHcC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      .+.++|..|+|||||++-+...
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3689999999999999988543

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.98  E-value=0.0067  Score=45.61  Aligned_cols=20  Identities=35%  Similarity=0.496  Sum_probs=18.3

Q ss_pred             EEEEECCCCccHHHHHHHHH
Q psy8250          26 LLAIMGPSGAGKTTLLACIS   45 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~   45 (212)
                      -+||+|.-+||||||+..|.
T Consensus         5 ni~iiGhvd~GKSTL~~~Ll   24 (204)
T d2c78a3           5 NVGTIGHVDHGKTTLTAALT   24 (204)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHH
Confidence            37999999999999999985

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=94.93  E-value=0.008  Score=44.94  Aligned_cols=24  Identities=29%  Similarity=0.418  Sum_probs=21.3

Q ss_pred             EEEEECCCCccHHHHHHHHHcCCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      .+||+|.-.+|||||++.|+|...
T Consensus        10 ni~iiGhVd~GKSTL~~~L~~~~~   33 (205)
T d2qn6a3          10 NIGVVGHVDHGKTTLVQAITGIWT   33 (205)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred             EEEEEEccCCcHHHHHHHHHhhhc
Confidence            589999999999999999998553

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.85  E-value=0.0064  Score=48.10  Aligned_cols=29  Identities=24%  Similarity=0.445  Sum_probs=25.0

Q ss_pred             EEEcCCcEEEEECCCCccHHHHHHHHHcC
Q psy8250          19 GIAESGSLLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        19 ~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      +.+-+|+..+|+|+.|+|||||+..|+..
T Consensus        63 ~pigkGQr~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          63 APYAKGGKIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             SCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             ccccCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence            45789999999999999999998777643

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.73  E-value=0.0069  Score=47.93  Aligned_cols=29  Identities=34%  Similarity=0.399  Sum_probs=20.4

Q ss_pred             EEEEECCCCccHHHHHHHH---HcCCCCCCceEE
Q psy8250          26 LLAIMGPSGAGKTTLLACI---SQRIQGDVDGQI   56 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i---~g~~~p~~~G~I   56 (212)
                      -+||+|..|||||||...|   +|....  .|++
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~--~g~v   39 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILYYTGRIHK--IGEV   39 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTSSCC------
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhcCcccc--ccce
Confidence            4899999999999999998   454432  4444

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.72  E-value=0.01  Score=46.65  Aligned_cols=24  Identities=21%  Similarity=0.372  Sum_probs=20.8

Q ss_pred             CCcEEEEECCCCccHHHHHHHHHc
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACISQ   46 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~g   46 (212)
                      +..+++|.|.-|.|||||.+.+..
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999998854

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.64  E-value=0.009  Score=45.20  Aligned_cols=22  Identities=36%  Similarity=0.572  Sum_probs=19.6

Q ss_pred             EEEECCCCccHHHHHHHHHcCC
Q psy8250          27 LAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        27 ~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      +.|.||+|+|||-|+++++...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~   60 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEA   60 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHh
Confidence            6799999999999999998654

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=94.52  E-value=0.0079  Score=49.74  Aligned_cols=21  Identities=33%  Similarity=0.585  Sum_probs=17.5

Q ss_pred             cEEEEECCCCccHHHHHHHHH
Q psy8250          25 SLLAIMGPSGAGKTTLLACIS   45 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~   45 (212)
                      ..+.|+|++|||||++++.+.
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li   71 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELA   71 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHH
Confidence            458999999999999987543

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.38  E-value=0.012  Score=44.19  Aligned_cols=24  Identities=25%  Similarity=0.387  Sum_probs=20.9

Q ss_pred             EEEEECCCCccHHHHHHHHHcCCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      .+.+.||.|+||||+.+.++..+.
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~~l~   49 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSRYLL   49 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHHHhcc
Confidence            478999999999999999987553

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.33  E-value=0.012  Score=45.00  Aligned_cols=23  Identities=22%  Similarity=0.449  Sum_probs=19.6

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .+.|.||+|+||||+.++++..+
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~~l   58 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAKGL   58 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHh
Confidence            36788999999999999987654

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.70  E-value=0.019  Score=45.15  Aligned_cols=23  Identities=30%  Similarity=0.468  Sum_probs=20.0

Q ss_pred             cEEEEECCCCccHHHHHHHHHcC
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      .-+.|+||.|+|||+++.-++..
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHHH
Confidence            45789999999999999998854

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=93.70  E-value=0.018  Score=43.00  Aligned_cols=22  Identities=36%  Similarity=0.456  Sum_probs=19.6

Q ss_pred             EEEEECCCCccHHHHHHHHHcC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQR   47 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~   47 (212)
                      -+||+|.-++|||||++.|.+.
T Consensus         5 ni~iiGHvd~GKSTL~~~l~~~   26 (196)
T d1d2ea3           5 NVGTIGHVDHGKTTLTAAITKI   26 (196)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHHH
Confidence            3799999999999999999764

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.70  E-value=0.02  Score=42.84  Aligned_cols=24  Identities=33%  Similarity=0.625  Sum_probs=20.7

Q ss_pred             cEEEEECCCCccHHHHHHHHHcCC
Q psy8250          25 SLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        25 e~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .-..|+||.|.|||+++.-++..+
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEecCCcccHHHHHHHHHHH
Confidence            357899999999999999998654

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=93.69  E-value=0.018  Score=46.11  Aligned_cols=41  Identities=22%  Similarity=0.358  Sum_probs=28.9

Q ss_pred             CCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeC
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV   63 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~   63 (212)
                      |.-.+.++||+|+|||.|.+.|+-.+......-+.++....
T Consensus        52 p~~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~~   92 (315)
T d1qvra3          52 PIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY   92 (315)
T ss_dssp             CSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTC
T ss_pred             CceEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEecccc
Confidence            34467899999999999999999866321234556665444

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=93.67  E-value=0.03  Score=45.23  Aligned_cols=25  Identities=24%  Similarity=0.316  Sum_probs=21.6

Q ss_pred             EEEEECCCCccHHHHHHHHHcCCCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRIQG   50 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~~p   50 (212)
                      .+.|=|+-|+||||+++.|...+..
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~~l~~   32 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMASAASG   32 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred             EEEEECCccCCHHHHHHHHHHHhcc
Confidence            4678899999999999999987654

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=93.61  E-value=0.018  Score=46.18  Aligned_cols=20  Identities=50%  Similarity=0.742  Sum_probs=18.0

Q ss_pred             cCCcEEEEECCCCccHHHHH
Q psy8250          22 ESGSLLAIMGPSGAGKTTLL   41 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl   41 (212)
                      +.|++..+.|.||+|||||-
T Consensus        12 ~~~~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          12 EKGDVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             TTSCEEEEECSTTSSHHHHH
T ss_pred             CCCCEEEEEccCCCCcccce
Confidence            56899999999999999974

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=93.55  E-value=0.022  Score=44.62  Aligned_cols=34  Identities=21%  Similarity=0.404  Sum_probs=27.8

Q ss_pred             EcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEE
Q psy8250          21 AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQI   56 (212)
Q Consensus        21 i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I   56 (212)
                      .++--++.|.||-++||||++++|+.++ + ..|.+
T Consensus       101 ~~k~n~~~l~G~~~tGKS~f~~~i~~~l-g-~~~~~  134 (267)
T d1u0ja_         101 FGKRNTIWLFGPATTGKTNIAEAIAHTV-P-FYGCV  134 (267)
T ss_dssp             STTCCEEEEECSTTSSHHHHHHHHHHHS-S-CEEEC
T ss_pred             CCccEEEEEEcCCCCCHHHHHHHHHHHh-c-chhhc
Confidence            3566788999999999999999999987 5 35543

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=93.38  E-value=0.016  Score=45.67  Aligned_cols=30  Identities=20%  Similarity=0.110  Sum_probs=24.7

Q ss_pred             EEEcCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          19 GIAESGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        19 ~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      +.+-+|+..+|+|++|+|||+|+..+.-..
T Consensus        62 ~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~   91 (276)
T d1fx0a3          62 IPVGRGQRELIIGDRQTGKTAVATDTILNQ   91 (276)
T ss_dssp             SCCBTTCBCBEEESSSSSHHHHHHHHHHTC
T ss_pred             ccccCCceEeeccCCCCChHHHHHHHHhhh
Confidence            457899999999999999999987654333

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=93.29  E-value=0.018  Score=46.30  Aligned_cols=20  Identities=45%  Similarity=0.704  Sum_probs=17.6

Q ss_pred             cCCcEEEEECCCCccHHHHH
Q psy8250          22 ESGSLLAIMGPSGAGKTTLL   41 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl   41 (212)
                      +.|++..+.|.||+|||||-
T Consensus        12 ~~~~valffGLSGTGKTTLs   31 (318)
T d1j3ba1          12 KEGDVAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             TTCCEEEEEECTTSCHHHHT
T ss_pred             CCCCEEEEEccCCCCccccc
Confidence            35899999999999999974

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=93.28  E-value=0.022  Score=45.89  Aligned_cols=29  Identities=24%  Similarity=0.484  Sum_probs=22.7

Q ss_pred             EEEcCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          19 GIAESGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        19 ~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      ....+| ++.+.||.|+|||.|.+.|++..
T Consensus       119 ~~~~~g-~~l~~G~pG~GKT~la~ala~~~  147 (321)
T d1w44a_         119 HRYASG-MVIVTGKGNSGKTPLVHALGEAL  147 (321)
T ss_dssp             EEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred             cccCCc-eEEEECCCCccHHHHHHHHHHHh
Confidence            344555 55668999999999999999854

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=92.88  E-value=0.028  Score=45.93  Aligned_cols=28  Identities=21%  Similarity=0.623  Sum_probs=22.4

Q ss_pred             EcCCcEEEEECCCCccHHHHHHHHHcCCC
Q psy8250          21 AESGSLLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        21 i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      ++++. +-++||+|+|||-|.|.|+..+.
T Consensus        66 ~p~~n-iLfiGPTGvGKTElAk~LA~~~~   93 (364)
T d1um8a_          66 LSKSN-ILLIGPTGSGKTLMAQTLAKHLD   93 (364)
T ss_dssp             CCCCC-EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCCcc-eeeeCCCCccHHHHHHHHHhhcc
Confidence            34555 55789999999999999997653

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=92.84  E-value=0.027  Score=45.21  Aligned_cols=20  Identities=45%  Similarity=0.702  Sum_probs=18.1

Q ss_pred             cCCcEEEEECCCCccHHHHH
Q psy8250          22 ESGSLLAIMGPSGAGKTTLL   41 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl   41 (212)
                      +.|++..+.|-||+|||||-
T Consensus        12 ~~gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          12 KQGDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             TTCCEEEEECCTTSSHHHHH
T ss_pred             CCCCEEEEEccCCCCcccce
Confidence            46899999999999999995

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.83  E-value=0.025  Score=42.79  Aligned_cols=20  Identities=30%  Similarity=0.471  Sum_probs=17.9

Q ss_pred             EEEEECCCCccHHHHHHHHH
Q psy8250          26 LLAIMGPSGAGKTTLLACIS   45 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~   45 (212)
                      -+|++|.-++|||||+..|.
T Consensus         5 Ni~viGHVd~GKTTL~~~Ll   24 (224)
T d1jnya3           5 NLIVIGHVDHGKSTLVGRLL   24 (224)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEecCCCCHHHHHHHHH
Confidence            37999999999999999884

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=92.73  E-value=0.025  Score=45.66  Aligned_cols=23  Identities=35%  Similarity=0.345  Sum_probs=19.1

Q ss_pred             EEEEECCCCccHHHHHHHHHcCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .++|=|+-||||||+++.|...+
T Consensus         6 rI~IEG~iGsGKTTl~~~La~~l   28 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVALG   28 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC--
T ss_pred             EEEEECCcCCCHHHHHHHHHHHh
Confidence            47889999999999999998654

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.65  E-value=0.017  Score=45.79  Aligned_cols=27  Identities=22%  Similarity=0.171  Sum_probs=23.5

Q ss_pred             EEEcCCcEEEEECCCCccHHHHHHHHH
Q psy8250          19 GIAESGSLLAIMGPSGAGKTTLLACIS   45 (212)
Q Consensus        19 ~~i~~Ge~~~iiGpnGaGKSTLl~~i~   45 (212)
                      +.+-+|+..+|+|+.|+|||||+.-++
T Consensus        63 ~pig~GQr~~If~~~g~GKt~ll~~~~   89 (285)
T d2jdia3          63 VPIGRGQRELIIGDRQTGKTSIAIDTI   89 (285)
T ss_dssp             SCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred             cCccCCCEEEeecCCCCChHHHHHHHH
Confidence            567899999999999999999976554

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=92.62  E-value=0.021  Score=46.18  Aligned_cols=25  Identities=24%  Similarity=0.207  Sum_probs=21.7

Q ss_pred             EEEEECCCCccHHHHHHHHHcCCCC
Q psy8250          26 LLAIMGPSGAGKTTLLACISQRIQG   50 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~g~~~p   50 (212)
                      .++|=|+=||||||+++.|...+..
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~~l~~   31 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLHHFAI   31 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhh
Confidence            4788899999999999999987654

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=92.44  E-value=0.013  Score=39.94  Aligned_cols=21  Identities=29%  Similarity=0.281  Sum_probs=17.9

Q ss_pred             EcCCcEEEEECCCCccHHHHH
Q psy8250          21 AESGSLLAIMGPSGAGKTTLL   41 (212)
Q Consensus        21 i~~Ge~~~iiGpnGaGKSTLl   41 (212)
                      +++|+.+.|.+|.|||||+..
T Consensus         4 l~~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           4 LKKGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             TSTTCEEEECCCTTSSTTTTH
T ss_pred             HHcCCcEEEEcCCCCChhHHH
Confidence            468999999999999999543

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=92.37  E-value=0.031  Score=43.41  Aligned_cols=25  Identities=4%  Similarity=-0.239  Sum_probs=17.6

Q ss_pred             HHHhhCCCeEEecCCCCCChhhHHH
Q psy8250         144 VQTIIVQSGFVPQHDLTVDTLTVHE  168 (212)
Q Consensus       144 ~al~~~p~llilDEPt~lD~~~~~~  168 (212)
                      .....+.+.++.||.-.+++....-
T Consensus       201 ~~~~~~~~~i~vDE~QD~~~~~~~~  225 (306)
T d1uaaa1         201 KRWQNKIRYLLVDEYQDTNTSQYEL  225 (306)
T ss_dssp             HHHHTTCSEEEESCGGGCBHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHhhHHHHhh
Confidence            3444578999999988877755443

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=92.18  E-value=0.026  Score=44.35  Aligned_cols=16  Identities=50%  Similarity=0.717  Sum_probs=13.3

Q ss_pred             EEEEECCCCccHHHHH
Q psy8250          26 LLAIMGPSGAGKTTLL   41 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl   41 (212)
                      .+.|.|+.||||||.|
T Consensus        26 ~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             CEEEEECTTSCHHHHH
T ss_pred             CEEEEecCCccHHHHH
Confidence            4668899999999765

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=91.86  E-value=0.049  Score=41.28  Aligned_cols=19  Identities=26%  Similarity=0.412  Sum_probs=17.8

Q ss_pred             EEEECCCCccHHHHHHHHH
Q psy8250          27 LAIMGPSGAGKTTLLACIS   45 (212)
Q Consensus        27 ~~iiGpnGaGKSTLl~~i~   45 (212)
                      ++++|.-.+|||||+..|.
T Consensus        12 i~viGHVd~GKSTL~~~Ll   30 (222)
T d1zunb3          12 FLTCGNVDDGKSTLIGRLL   30 (222)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            7899999999999999995

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=91.77  E-value=0.058  Score=37.85  Aligned_cols=24  Identities=38%  Similarity=0.462  Sum_probs=20.3

Q ss_pred             CcEEEEECCCCccHHH-HHHHHHcC
Q psy8250          24 GSLLAIMGPSGAGKTT-LLACISQR   47 (212)
Q Consensus        24 Ge~~~iiGpnGaGKST-Ll~~i~g~   47 (212)
                      |.+..|+||=.||||| |++.+-..
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~~~   26 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLHRL   26 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             cEEEEEEccccCHHHHHHHHHHHHH
Confidence            7788999999999999 77777543

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=91.36  E-value=0.066  Score=43.54  Aligned_cols=21  Identities=38%  Similarity=0.496  Sum_probs=17.8

Q ss_pred             CCcEEEEECCCCccHHHHHHH
Q psy8250          23 SGSLLAIMGPSGAGKTTLLAC   43 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~   43 (212)
                      .+.++.|.||-|+||||++..
T Consensus       162 ~~~~~vI~G~pGTGKTt~i~~  182 (359)
T d1w36d1         162 TRRISVISGGPGTGKTTTVAK  182 (359)
T ss_dssp             TBSEEEEECCTTSTHHHHHHH
T ss_pred             cCCeEEEEcCCCCCceehHHH
Confidence            367999999999999998743

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=91.35  E-value=0.057  Score=42.02  Aligned_cols=26  Identities=23%  Similarity=0.348  Sum_probs=22.6

Q ss_pred             CcEEEEECCCCccHHHHHHHHHcCCC
Q psy8250          24 GSLLAIMGPSGAGKTTLLACISQRIQ   49 (212)
Q Consensus        24 Ge~~~iiGpnGaGKSTLl~~i~g~~~   49 (212)
                      +-.++|+|-..+|||||+|.|.|.-.
T Consensus       112 ~~~v~vvG~PNvGKSsliN~L~~~~~  137 (273)
T d1puja_         112 AIRALIIGIPNVGKSTLINRLAKKNI  137 (273)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred             ceEEEEEecCccchhhhhhhhhccce
Confidence            44589999999999999999999654

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=91.16  E-value=0.049  Score=37.32  Aligned_cols=31  Identities=6%  Similarity=-0.074  Sum_probs=21.4

Q ss_pred             HhhCCCeEEecCCCCCChhhHHHHHHHHHHH
Q psy8250         146 TIIVQSGFVPQHDLTVDTLTVHEHMTLMARL  176 (212)
Q Consensus       146 l~~~p~llilDEPt~lD~~~~~~~~~~l~~l  176 (212)
                      ...+-+++|+||-=.++..+...+..+++.+
T Consensus        91 ~~~~~~~vIiDE~H~~~~~~~~~~~~~l~~~  121 (136)
T d1a1va1          91 SGGAYDIIICDECHSTDATSILGIGTVLDQA  121 (136)
T ss_dssp             GGCCCSEEEEETTTCCSHHHHHHHHHHHHHT
T ss_pred             hhhcCCEEEEecccccCHHHHHHHHHHHHHH
Confidence            3456799999999877776655555555443

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=91.05  E-value=0.035  Score=43.10  Aligned_cols=25  Identities=32%  Similarity=0.275  Sum_probs=19.9

Q ss_pred             EcCCcEEEEECCCCccHHH--HHHHHH
Q psy8250          21 AESGSLLAIMGPSGAGKTT--LLACIS   45 (212)
Q Consensus        21 i~~Ge~~~iiGpnGaGKST--Ll~~i~   45 (212)
                      +.+|+.+.|.+|.|||||+  |..++.
T Consensus         6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~   32 (305)
T d2bmfa2           6 FRKKRLTIMDLHPGAGKTKRYLPAIVR   32 (305)
T ss_dssp             SSTTCEEEECCCTTSSTTTTHHHHHHH
T ss_pred             hhcCCcEEEEECCCCCHHHHHHHHHHH
Confidence            5789999999999999996  334443

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.63  E-value=0.055  Score=43.77  Aligned_cols=23  Identities=22%  Similarity=0.410  Sum_probs=20.0

Q ss_pred             EEEECCCCccHHHHHHHH---HcCCC
Q psy8250          27 LAIMGPSGAGKTTLLACI---SQRIQ   49 (212)
Q Consensus        27 ~~iiGpnGaGKSTLl~~i---~g~~~   49 (212)
                      +||+|.-|+|||||+..|   +|...
T Consensus        20 I~iiGhvd~GKTTL~d~Ll~~~g~i~   45 (341)
T d1n0ua2          20 MSVIAHVDHGKSTLTDSLVQRAGIIS   45 (341)
T ss_dssp             EEEECCGGGTHHHHHHHHHHHHBCCB
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCcc
Confidence            899999999999999998   46544

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.39  E-value=0.067  Score=40.93  Aligned_cols=20  Identities=20%  Similarity=0.361  Sum_probs=17.9

Q ss_pred             EEEEECCCCccHHHHHHHHH
Q psy8250          26 LLAIMGPSGAGKTTLLACIS   45 (212)
Q Consensus        26 ~~~iiGpnGaGKSTLl~~i~   45 (212)
                      -++|+|.-++|||||+..|+
T Consensus         8 Ni~iiGHvD~GKsTl~~~ll   27 (239)
T d1f60a3           8 NVVVIGHVDSGKSTTTGHLI   27 (239)
T ss_dssp             EEEEEECTTSCHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            47899999999999998884

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.35  E-value=0.095  Score=38.79  Aligned_cols=26  Identities=12%  Similarity=0.084  Sum_probs=21.9

Q ss_pred             CCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      .+..+.+-||+|+||||+.+.++..+
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i   39 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYV   39 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH
Confidence            35578899999999999999988744

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=90.27  E-value=0.086  Score=46.53  Aligned_cols=27  Identities=37%  Similarity=0.402  Sum_probs=22.4

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      ...+.+.|.|+||||||+-.|.|...+
T Consensus        84 ~~~QsIiisGeSGsGKTe~~k~il~yL  110 (684)
T d1lkxa_          84 QENQCVIISGESGAGKTEASKKIMQFL  110 (684)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            457899999999999999888875543

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=90.25  E-value=0.086  Score=46.76  Aligned_cols=27  Identities=37%  Similarity=0.400  Sum_probs=23.1

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      ...+.+.|.|+||||||+-.|.|...+
T Consensus       123 ~~nQsIiisGeSGaGKTe~~k~il~yL  149 (712)
T d1d0xa2         123 RQNQSLLITGESGAGKTENTKKVIQYL  149 (712)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence            457899999999999999998886654

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=89.95  E-value=0.06  Score=40.34  Aligned_cols=28  Identities=21%  Similarity=0.318  Sum_probs=24.9

Q ss_pred             EcCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          21 AESGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        21 i~~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      +++--++.|.||.++|||++..+|+.++
T Consensus        50 ~PKkn~i~~~GP~~TGKS~f~~sl~~~l   77 (205)
T d1tuea_          50 TPKKNCLVFCGPANTGKSYFGMSFIHFI   77 (205)
T ss_dssp             CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCccHHHHHHHHHHHh
Confidence            4677889999999999999999998875

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=89.76  E-value=0.099  Score=46.31  Aligned_cols=27  Identities=30%  Similarity=0.319  Sum_probs=22.8

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      ...+.+.|-|+||||||+-.|.|...+
T Consensus        89 ~~~Q~IiisGeSGaGKTe~~k~il~yL  115 (710)
T d1br2a2          89 REDQSILCTGESGAGKTENTKKVIQYL  115 (710)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            457899999999999999988886654

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=89.74  E-value=0.062  Score=41.26  Aligned_cols=18  Identities=39%  Similarity=0.547  Sum_probs=17.3

Q ss_pred             EEEECCCCccHHHHHHHH
Q psy8250          27 LAIMGPSGAGKTTLLACI   44 (212)
Q Consensus        27 ~~iiGpnGaGKSTLl~~i   44 (212)
                      ++|+|.-++|||||+..|
T Consensus        27 i~iiGHVD~GKSTL~~~L   44 (245)
T d1r5ba3          27 IVFIGHVDAGKSTLGGNI   44 (245)
T ss_dssp             EEEEECGGGTHHHHHHHH
T ss_pred             EEEEeeCCCCHHHHHHHH
Confidence            799999999999999988

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=89.43  E-value=0.077  Score=43.62  Aligned_cols=20  Identities=30%  Similarity=0.640  Sum_probs=16.8

Q ss_pred             EEEECCCCccHHHHHHHHHc
Q psy8250          27 LAIMGPSGAGKTTLLACISQ   46 (212)
Q Consensus        27 ~~iiGpnGaGKSTLl~~i~g   46 (212)
                      ..||||+|.|||+++.-++.
T Consensus        46 ~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          46 PVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CEEEECTTSCHHHHHHHHHH
T ss_pred             CeEECCCCCCHHHHHHHHHH
Confidence            57999999999999876553

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.43  E-value=0.13  Score=35.15  Aligned_cols=25  Identities=8%  Similarity=0.115  Sum_probs=21.1

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHc
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQ   46 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g   46 (212)
                      ++|=.+.+-|-+||||||+-++|.-
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHH
Confidence            4566788999999999999999844

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.07  E-value=0.12  Score=35.81  Aligned_cols=23  Identities=35%  Similarity=0.466  Sum_probs=18.8

Q ss_pred             CCcEEEEECCCCccHHHHHHHHH
Q psy8250          23 SGSLLAIMGPSGAGKTTLLACIS   45 (212)
Q Consensus        23 ~Ge~~~iiGpnGaGKSTLl~~i~   45 (212)
                      +|.+..|+||=.|||||-|--..
T Consensus         1 ~G~L~li~GpMfsGKTt~Li~~~   23 (133)
T d1xbta1           1 RGQIQVILGPMFSGKSTELMRRV   23 (133)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHH
T ss_pred             CcEEEEEEecccCHHHHHHHHHH
Confidence            58899999999999999654433

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=88.77  E-value=0.12  Score=39.61  Aligned_cols=27  Identities=26%  Similarity=0.293  Sum_probs=22.1

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      ..+.-+.|.||.|+||+++.+.|...-
T Consensus        21 ~~~~pvlI~Ge~GtGK~~~A~~ih~~s   47 (247)
T d1ny5a2          21 CAECPVLITGESGVGKEVVARLIHKLS   47 (247)
T ss_dssp             TCCSCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence            345568899999999999999997543

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=88.31  E-value=0.12  Score=46.29  Aligned_cols=27  Identities=33%  Similarity=0.372  Sum_probs=22.2

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      ...+.+.|.|+||||||+-.|.|...+
T Consensus       121 ~~~QsIiisGeSGaGKTe~~K~il~yL  147 (794)
T d2mysa2         121 RENQSILITGESGAGKTVNTKRVIQYF  147 (794)
T ss_dssp             TCCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            456889999999999998888776544

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=87.98  E-value=0.14  Score=45.93  Aligned_cols=27  Identities=30%  Similarity=0.287  Sum_probs=21.8

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      ...+.+.|-|+||||||.-.|.|...+
T Consensus       119 ~~nQ~IiisGESGaGKTe~~K~il~yL  145 (789)
T d1kk8a2         119 RENQSCLITGESGAGKTENTKKVIMYL  145 (789)
T ss_dssp             TSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            356899999999999998877766544

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=87.49  E-value=0.17  Score=44.81  Aligned_cols=27  Identities=30%  Similarity=0.366  Sum_probs=22.7

Q ss_pred             cCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACISQRI   48 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~   48 (212)
                      ...+.+.|.|+||||||+-.|.|...+
T Consensus        92 ~~~Q~IiisGeSGsGKTe~~k~il~~l  118 (730)
T d1w7ja2          92 ERNQSIIVSGESGAGKTVSAKYAMRYF  118 (730)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            457889999999999999888886644

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.37  E-value=0.092  Score=39.52  Aligned_cols=23  Identities=26%  Similarity=0.385  Sum_probs=18.4

Q ss_pred             cCCcEEEEECCCCccHHHHHHHH
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACI   44 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i   44 (212)
                      -.|+-+.+++|.|+|||+..-+.
T Consensus        56 l~g~~~~i~apTGsGKT~~~~~~   78 (237)
T d1gkub1          56 LRKESFAATAPTGVGKTSFGLAM   78 (237)
T ss_dssp             HTTCCEECCCCBTSCSHHHHHHH
T ss_pred             HCCCCEEEEecCCChHHHHHHHH
Confidence            36888999999999999764433

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.29  E-value=0.11  Score=37.97  Aligned_cols=19  Identities=47%  Similarity=0.534  Sum_probs=16.0

Q ss_pred             cCCcEEEEECCCCccHHHH
Q psy8250          22 ESGSLLAIMGPSGAGKTTL   40 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTL   40 (212)
                      .+|.-+.|.+|.|||||+.
T Consensus        38 ~~~~~~il~apTGsGKT~~   56 (202)
T d2p6ra3          38 FSGKNLLLAMPTAAGKTLL   56 (202)
T ss_dssp             TTCSCEEEECSSHHHHHHH
T ss_pred             HcCCCEEEEcCCCCchhHH
Confidence            4577788999999999975

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=84.77  E-value=0.29  Score=34.18  Aligned_cols=23  Identities=30%  Similarity=0.398  Sum_probs=18.8

Q ss_pred             cCCcEEEEECCCCccHHHHHHHH
Q psy8250          22 ESGSLLAIMGPSGAGKTTLLACI   44 (212)
Q Consensus        22 ~~Ge~~~iiGpnGaGKSTLl~~i   44 (212)
                      ..|.+..|+||=.|||||-|--.
T Consensus         5 ~~G~l~lI~GpMfSGKTteLi~~   27 (141)
T d1xx6a1           5 DHGWVEVIVGPMYSGKSEELIRR   27 (141)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHH
T ss_pred             cceeEEEEEeccccHHHHHHHHH
Confidence            46899999999999999955433

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=82.87  E-value=0.4  Score=34.41  Aligned_cols=18  Identities=39%  Similarity=0.519  Sum_probs=13.3

Q ss_pred             EEEECCCCccHHHHHHHH
Q psy8250          27 LAIMGPSGAGKTTLLACI   44 (212)
Q Consensus        27 ~~iiGpnGaGKSTLl~~i   44 (212)
                      ..+++|.|||||...-.+
T Consensus        26 ~lv~~pTGsGKT~i~~~~   43 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIAMMI   43 (200)
T ss_dssp             EEEECCTTSCHHHHHHHH
T ss_pred             eEEEeCCCCcHHHHHHHH
Confidence            457899999999754333