Psyllid ID: psy8280

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
MEDPSGTEIPFPGTQNGTGDPDPDPRDEDLARIEILTLLVILIITLIGNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDINYRFPGQSNWTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPLTYHTYFYLIGRVEHN
cccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHccccccc
cccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHEHEccEccc
medpsgteipfpgtqngtgdpdpdprdedlARIEILTLLVILIITLIGNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPqlwwdinyrfpgqsnwtcklvkfvqpsgsflsSYILMAIAIDRYRAichpltyhTYFYLIGRVEHN
medpsgteipfpgtqngtgdpdpDPRDEDLARIEILTLLVILIITLIGNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDINYRFPGQSNWTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPLTYHTYFYLIGRVEHN
MEDPSGTEIPFPGTQNGTGDPDPDPRDEDLARIEiltllviliitliGNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDINYRFPGQSNWTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPLTYHTYFYLIGRVEHN
*****************************LARIEILTLLVILIITLIGNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDINYRFPGQSNWTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPLTYHTYFYLIGRV***
******T***FPGTQNGT******PRDEDLARIEILTLLVILIITLIGNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDINYRFPGQSNWTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPLTYHTYFYLIGRV***
MEDPSGTEIPFPGTQN********PRDEDLARIEILTLLVILIITLIGNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDINYRFPGQSNWTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPLTYHTYFYLIGRVEHN
**********************PDPRDEDLARIEILTLLVILIITLIGNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDINYRFPGQSNWTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPLTYHTYFYLIGRVE**
ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
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MEDPSGTEIPFPGTQNGTGDPDPDPRDEDLARIEILTLLVILIITLIGNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDINYRFPGQSNWTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPLTYHTYFYLIGRVEHN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query158 2.2.26 [Sep-21-2011]
Q7YW31 397 Cephalotocin receptor 1 O N/A N/A 0.854 0.340 0.472 1e-29
P56449 391 Oxytocin receptor OS=Bos yes N/A 0.848 0.342 0.478 3e-28
Q9WTV8 420 Vasopressin V1a receptor N/A N/A 0.784 0.295 0.488 1e-27
Q28756 391 Oxytocin receptor OS=Ovis N/A N/A 0.848 0.342 0.471 1e-27
Q9WTV9 420 Vasopressin V1a receptor N/A N/A 0.784 0.295 0.488 1e-27
P70536 388 Oxytocin receptor OS=Ratt yes N/A 0.822 0.335 0.478 2e-27
P97926 388 Oxytocin receptor OS=Mus yes N/A 0.822 0.335 0.478 3e-27
P32306 386 Oxytocin receptor OS=Sus no N/A 0.797 0.326 0.477 4e-27
P56494 389 Oxytocin receptor OS=Maca yes N/A 0.848 0.344 0.464 5e-27
Q62463 423 Vasopressin V1a receptor no N/A 0.753 0.281 0.488 6e-27
>sp|Q7YW31|CTR1_OCTVU Cephalotocin receptor 1 OS=Octopus vulgaris GN=CTR1 PE=2 SV=1 Back     alignment and function desciption
 Score =  128 bits (322), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 69/146 (47%), Positives = 95/146 (65%), Gaps = 11/146 (7%)

Query: 5   SGTEI--PFPGTQNGTGDPDPDPRDEDLARIEILTLLVILIITLIGNLMVLAALYSRRHY 62
           S TEI   F   +N T    P  R++DLA  E++TL V++IIT+IGN +VL  L+ RR  
Sbjct: 20  SSTEIWSNFSAAKNET---QPIRRNQDLANAEVITLAVVIIITVIGNSIVLITLFQRRK- 75

Query: 63  RKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDINYRFPGQSNWTCKLVKFVQPSGSF 122
               K++RM+ FILHLS+ DL    FN LPQ+ WDI + F G ++  C+LV ++Q    +
Sbjct: 76  ----KLTRMHLFILHLSVTDLFVAFFNNLPQMIWDITFLFLG-TDLLCRLVTYLQSVAMY 130

Query: 123 LSSYILMAIAIDRYRAICHPLTYHTY 148
            SSY+L+A AIDRY AICHPL+ H +
Sbjct: 131 ASSYVLVATAIDRYFAICHPLSSHKW 156
Acts as a receptor for cephalotocin.
Octopus vulgaris (taxid: 6645)
>sp|P56449|OXYR_BOVIN Oxytocin receptor OS=Bos taurus GN=OXTR PE=2 SV=1 Back     alignment and function description
>sp|Q9WTV8|V1AR_MICMA Vasopressin V1a receptor OS=Microtus montanus GN=Avpr1a PE=3 SV=2 Back     alignment and function description
>sp|Q28756|OXYR_SHEEP Oxytocin receptor OS=Ovis aries GN=OXTR PE=1 SV=1 Back     alignment and function description
>sp|Q9WTV9|V1AR_MICOH Vasopressin V1a receptor OS=Microtus ochrogaster GN=Avpr1a PE=3 SV=1 Back     alignment and function description
>sp|P70536|OXYR_RAT Oxytocin receptor OS=Rattus norvegicus GN=Oxtr PE=2 SV=2 Back     alignment and function description
>sp|P97926|OXYR_MOUSE Oxytocin receptor OS=Mus musculus GN=Oxtr PE=2 SV=1 Back     alignment and function description
>sp|P32306|OXYR_PIG Oxytocin receptor OS=Sus scrofa GN=OXTR PE=2 SV=1 Back     alignment and function description
>sp|P56494|OXYR_MACMU Oxytocin receptor OS=Macaca mulatta GN=OXTR PE=2 SV=1 Back     alignment and function description
>sp|Q62463|V1AR_MOUSE Vasopressin V1a receptor OS=Mus musculus GN=Avpr1a PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query158
332020179 424 [Arg8]-vasotocin receptor [Acromyrmex ec 0.772 0.287 0.596 8e-35
322795745 374 hypothetical protein SINV_08630 [Solenop 0.778 0.328 0.608 1e-34
159798024 403 vasopressin/oxytocin receptor-like prote 0.810 0.317 0.573 2e-34
145651804 403 inotocin receptor [Tribolium castaneum] 0.810 0.317 0.573 2e-34
270011132 446 hypothetical protein TcasGA2_TC016363 [T 0.810 0.286 0.573 4e-34
288558762 387 neuropeptide receptor [Nasonia vitripenn 0.797 0.325 0.535 3e-33
241632160 300 vasopressin v1a recpetor, putative [Ixod 0.740 0.39 0.552 3e-28
75012511 397 RecName: Full=Cephalotocin receptor 1; A 0.854 0.340 0.472 7e-28
345316989 374 PREDICTED: oxytocin receptor-like, parti 0.797 0.336 0.492 1e-27
321458255 349 putative vasopressin/oxytocin receptor [ 0.772 0.349 0.492 1e-27
>gi|332020179|gb|EGI60623.1| [Arg8]-vasotocin receptor [Acromyrmex echinatior] Back     alignment and taxonomy information
 Score =  151 bits (382), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 74/124 (59%), Positives = 96/124 (77%), Gaps = 2/124 (1%)

Query: 22  DPDPRDEDLARIEILTLLVILIITLIGNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIA 81
           D D RDE LAR EI  L  I +IT+IGN+++L ALY+RR Y+++ K +RMY+FI+HLS+A
Sbjct: 16  DDDARDEYLARWEIAVLTSIFLITIIGNVLILLALYARRRYQRR-KFTRMYFFIMHLSVA 74

Query: 82  DLVTGVFNVLPQLWWDINYRFPGQSNWTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICH 141
           DL+TG+F+VLPQL WDI +RF G +   CKL+KF QP G +LSSYIL   A+DRY AICH
Sbjct: 75  DLLTGLFDVLPQLAWDITFRFQGGAV-LCKLIKFGQPFGLYLSSYILTVTAMDRYHAICH 133

Query: 142 PLTY 145
           P +Y
Sbjct: 134 PFSY 137

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom:

>gi|322795745|gb|EFZ18424.1| hypothetical protein SINV_08630 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|159798024|gb|ABX00684.1| vasopressin/oxytocin receptor-like protein [Tribolium castaneum] Back     alignment and taxonomy information
>gi|145651804|ref|NP_001078830.1| inotocin receptor [Tribolium castaneum] gi|144953865|gb|ABN79656.2| arginine vasopressin receptor [Tribolium castaneum] Back     alignment and taxonomy information
>gi|270011132|gb|EFA07580.1| hypothetical protein TcasGA2_TC016363 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|288558762|ref|NP_001165745.1| neuropeptide receptor [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|241632160|ref|XP_002408590.1| vasopressin v1a recpetor, putative [Ixodes scapularis] gi|215501196|gb|EEC10690.1| vasopressin v1a recpetor, putative [Ixodes scapularis] Back     alignment and taxonomy information
>gi|75012511|sp|Q7YW31.1|CTR1_OCTVU RecName: Full=Cephalotocin receptor 1; AltName: Full=OC/CE-R 1; AltName: Full=OT/VP superfamily peptide receptor 1 gi|33354121|dbj|BAC81147.1| OT/VP superfamily peptide receptor-1 [Octopus vulgaris] gi|54792594|dbj|BAD67169.1| cephalotocin receptor 1 [Octopus vulgaris] Back     alignment and taxonomy information
>gi|345316989|ref|XP_003429816.1| PREDICTED: oxytocin receptor-like, partial [Ornithorhynchus anatinus] Back     alignment and taxonomy information
>gi|321458255|gb|EFX69326.1| putative vasopressin/oxytocin receptor [Daphnia pulex] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query158
UNIPROTKB|P56449 391 OXTR "Oxytocin receptor" [Bos 0.848 0.342 0.450 2.6e-24
RGD|3239 388 Oxtr "oxytocin receptor" [Ratt 0.822 0.335 0.449 6.8e-24
UNIPROTKB|G3V6U8 421 Avpr1b "Vasopressin V1b recept 0.829 0.311 0.448 1e-23
RGD|61886 425 Avpr1b "arginine vasopressin r 0.829 0.308 0.448 1.1e-23
MGI|MGI:109147 388 Oxtr "oxytocin receptor" [Mus 0.822 0.335 0.449 1.4e-23
ZFIN|ZDB-GENE-110805-2 388 oxtr "oxytocin receptor" [Dani 0.734 0.298 0.467 1.4e-23
UNIPROTKB|F1SKD2 420 LOC100737663 "Uncharacterized 0.778 0.292 0.457 1.7e-23
UNIPROTKB|P37288 418 AVPR1A "Vasopressin V1a recept 0.759 0.287 0.456 2.8e-23
UNIPROTKB|F1NVW1 315 AVPR1B "Uncharacterized protei 0.848 0.425 0.415 2.9e-23
UNIPROTKB|E2RFT4 384 OXTR "Uncharacterized protein" 0.848 0.348 0.443 2.9e-23
UNIPROTKB|P56449 OXTR "Oxytocin receptor" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 64/142 (45%), Positives = 85/142 (59%)

Query:     2 EDPSGTEIPFPGTQNGTGDPDPDPRDEDLARIEXXXXXXXXXXXXXGNLMVLAALYSRRH 61
             E  +G+  P PGT+ G     P  R+E LAR+E             GN  VL AL + RH
Sbjct:    12 EAVNGSAAP-PGTE-GNRTAGPPQRNEALARVEVAVLCLILFLALSGNACVLLALRTTRH 69

Query:    62 YRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDINYRFPGQSNWTCKLVKFVQPSGS 121
                  K SR+++F+ HLSIADLV  VF VLPQL WDI +RF G  +  C+LVK++Q  G 
Sbjct:    70 -----KHSRLFFFMKHLSIADLVVAVFQVLPQLLWDITFRFYGP-DLLCRLVKYLQVVGM 123

Query:   122 FLSSYILMAIAIDRYRAICHPL 143
             F S+Y+L+ +++DR  AIC PL
Sbjct:   124 FASTYLLLLMSLDRCLAICQPL 145
GO:0005886 "plasma membrane" evidence=IEA
GO:0045777 "positive regulation of blood pressure" evidence=IEA
GO:0016021 "integral to membrane" evidence=IEA
GO:0005000 "vasopressin receptor activity" evidence=IEA
GO:0004990 "oxytocin receptor activity" evidence=IEA
RGD|3239 Oxtr "oxytocin receptor" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|G3V6U8 Avpr1b "Vasopressin V1b receptor" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|61886 Avpr1b "arginine vasopressin receptor 1B" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:109147 Oxtr "oxytocin receptor" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-110805-2 oxtr "oxytocin receptor" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1SKD2 LOC100737663 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P37288 AVPR1A "Vasopressin V1a receptor" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1NVW1 AVPR1B "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2RFT4 OXTR "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query158
pfam00001 251 pfam00001, 7tm_1, 7 transmembrane receptor (rhodop 2e-14
PHA03087 335 PHA03087, PHA03087, G protein-coupled chemokine re 0.001
PRK05702359 PRK05702, flhB, flagellar biosynthesis protein Flh 0.001
PHA02638 417 PHA02638, PHA02638, CC chemokine receptor-like pro 0.001
COG1480 700 COG1480, COG1480, Predicted membrane-associated HD 0.002
COG1377363 COG1377, FlhB, Flagellar biosynthesis pathway, com 0.004
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family) Back     alignment and domain information 
 Score = 67.7 bits (166), Expect = 2e-14
 Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 1/78 (1%)

Query: 71  MYYFILHLSIADLVTGVFNVLPQLWWDINYRFPGQSNWTCKLVKFVQPSGSFLSSYILMA 130
              F+L+L++ADL+  +      L++ +   +P   +  CKLV F+     + S  +L A
Sbjct: 13  TNIFLLNLAVADLLFLLTLPPWALYYLVGGDWPF-GDALCKLVGFLFVVNGYASILLLTA 71

Query: 131 IAIDRYRAICHPLTYHTY 148
           I+IDRY AI HPL Y   
Sbjct: 72  ISIDRYLAIVHPLRYRRI 89

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like protein; Provisional Back     alignment and domain information
>gnl|CDD|235569 PRK05702, flhB, flagellar biosynthesis protein FlhB; Reviewed Back     alignment and domain information
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein; Provisional Back     alignment and domain information
>gnl|CDD|224397 COG1480, COG1480, Predicted membrane-associated HD superfamily hydrolase [General function prediction only] Back     alignment and domain information
>gnl|CDD|224295 COG1377, FlhB, Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 158
KOG4219|consensus 423 99.87
PHA03234 338 DNA packaging protein UL33; Provisional 99.85
PHA02834 323 chemokine receptor-like protein; Provisional 99.81
PHA03087 335 G protein-coupled chemokine receptor-like protein; 99.8
PHA02638 417 CC chemokine receptor-like protein; Provisional 99.79
PHA03235 409 DNA packaging protein UL33; Provisional 99.78
KOG4220|consensus 503 99.74
PF00001 257 7tm_1: 7 transmembrane receptor (rhodopsin family) 99.7
PF10320 257 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep 99.49
KOG2087|consensus 363 99.32
PF10328 274 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept 99.15
PF10324 318 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept 98.5
PF11710201 Git3: G protein-coupled glucose receptor regulatin 98.26
PF10323 283 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemorecept 98.07
PF10321 313 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept 98.03
PF05296 303 TAS2R: Mammalian taste receptor protein (TAS2R); I 97.94
PF10316 273 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemorecep 97.65
PF05462 303 Dicty_CAR: Slime mold cyclic AMP receptor 97.64
PF03402 265 V1R: Vomeronasal organ pheromone receptor family, 97.49
PF10292 324 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor c 97.21
PF02118 275 Srg: Srg family chemoreceptor; InterPro: IPR000609 97.17
PF10317 292 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept 96.76
PF02117 328 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemorecept 95.43
PF06681226 DUF1182: Protein of unknown function (DUF1182); In 93.57
PF10326 307 7TM_GPCR_Str: Serpentine type 7TM GPCR chemorecept 92.2
PF00002 242 7tm_2: 7 transmembrane receptor (Secretin family); 90.9
PF10327 303 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemorecept 87.63
PF10319 310 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemorecept 86.96
PF10318 302 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemorecept 86.48
PF02101 405 Ocular_alb: Ocular albinism type 1 protein; InterP 85.02
PF03383153 Serpentine_r_xa: Caenorhabditis serpentine recepto 80.82
PF02175 236 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemorecept 80.12
>KOG4219|consensus Back     alignment and domain information 
Probab=99.87  E-value=1.3e-22  Score=157.10  Aligned_cols=115  Identities=28%  Similarity=0.501  Sum_probs=108.3

Q ss_pred             ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcccccc
Q psy8280          26 RDEDLARIEILTLLVILIITLIGNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDINYRFPGQ  105 (158)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~g~~~N~lvi~~~~~~~~l~~~~~~~~~~~~l~~La~~Dll~~~~~~~~~~~~~~~~~~~~~  105 (158)
                      .+.+......++|.++.+++++||.+++|++..+|+     +|+.+|+|+.|||+||++++++..+....+.+.+.|.+|
T Consensus        30 lp~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrr-----MRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~~W~~G  104 (423)
T KOG4219|consen   30 LPAWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRR-----MRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQEWYFG  104 (423)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhe-----hhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccc
Confidence            344566778899999999999999999999999999     999999999999999999999999999999999999999


Q ss_pred             cccchhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhcccccc
Q psy8280         106 SNWTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPLTYH  146 (158)
Q Consensus       106 ~~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~ai~~P~~y~  146 (158)
                       ...|++..+.......+|+++++++|+|||.||.+|++.+
T Consensus       105 -~f~C~f~nf~~itav~vSVfTlvAiA~DRy~AIi~Pl~~r  144 (423)
T KOG4219|consen  105 -SFYCRFVNFFPITAVFVSVFTLVAIAIDRYMAIIHPLQPR  144 (423)
T ss_pred             -cceeeeccccchhhhhHhHHHHHHHHHHHHHHHhhhcccC
Confidence             9999999999999999999999999999999999999865

>PHA03234 DNA packaging protein UL33; Provisional Back     alignment and domain information
>PHA02834 chemokine receptor-like protein; Provisional Back     alignment and domain information
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional Back     alignment and domain information
>PHA02638 CC chemokine receptor-like protein; Provisional Back     alignment and domain information
>PHA03235 DNA packaging protein UL33; Provisional Back     alignment and domain information
>KOG4220|consensus Back     alignment and domain information
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG2087|consensus Back     alignment and domain information
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor Back     alignment and domain information
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type [] Back     alignment and domain information
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs) Back     alignment and domain information
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor Back     alignment and domain information
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans Back     alignment and domain information
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes Back     alignment and domain information
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query158
4ea3_B 434 Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WI 2e-05
2ks9_A 364 Solution Conformation Of Substance P In Water Compl 1e-04
4daj_A 479 Structure Of The M3 Muscarinic Acetylcholine Recept 4e-04
3rze_A 452 Structure Of The Human Histamine H1 Receptor In Com 8e-04
>pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A PEPTIDE Mimetic Length = 434 Back     alignment and structure 
Iteration: 1

 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 48  GNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDINYRFPGQSN 107
           GN +V+  +   RH + +   +    +I +L++AD  T V   LP    DI   F    N
Sbjct: 142 GNCLVMYVIL--RHTKMKTATN---IYIFNLALAD--TLVLLTLPFQGTDILLGFWPFGN 194
Query: 108 WTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPL 143
             CK V  +     F S++ L A+++DRY AICHP+
Sbjct: 195 ALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPI 230
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed With Nk1r Length = 364 Back     alignment and structure
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor Length = 479 Back     alignment and structure
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex With Doxepin Length = 452 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query158
2ks9_A 364 Substance-P receptor; water, autodock, NK1, neurop 2e-19
3v2y_A 520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 4e-19
3eml_A 488 Human adenosine A2A receptor/T4 lysozyme chimera; 4e-17
4ea3_A 434 Fusion protein of nociceptin receptor and cytochr; 6e-16
4dkl_A 464 MU-type opioid receptor, lysozyme chimera; G-prote 5e-15
2rh1_A 500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 5e-15
1u19_A 349 Rhodopsin; G protein-coupled receptor, membrane pr 6e-15
3uon_A 467 Human M2 muscarinic acetylcholine, receptor T4 LY 3e-14
4eiy_A 447 Adenosine receptor A2A/soluble cytochrome B562 CH; 7e-14
2z73_A 448 Rhodopsin; visual pigment, GQ-type, G-protein coup 1e-13
3sn6_R 514 Lysozyme, beta-2 adrenergic receptor; seven transm 1e-13
3pbl_A 481 D(3) dopamine receptor, lysozyme chimera; structur 1e-13
3rze_A 452 Histamine H1 receptor, lysozyme chimera; structura 3e-13
3odu_A 502 C-X-C chemokine receptor type 4, lysozyme chimera; 5e-13
4amj_A 315 Beta-1 adrenergic receptor; membrane protein, 7TMR 6e-10
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364 Back     alignment and structure
 Score = 82.0 bits (203), Expect = 2e-19
 Identities = 32/141 (22%), Positives = 67/141 (47%), Gaps = 9/141 (6%)

Query: 4   PSGTEIPFPGTQNGTGDPDPDPRDEDLARIEILTLLVILIITLIGNLMVLAALYSRRHYR 63
           P  +++    + N + +P+   +      +      VI++ +++GN++V+  + + +  R
Sbjct: 6   PVDSDLSPNISTNTS-EPNQFVQPAWQIVLWAAAYTVIVVTSVVGNVVVMWIILAHKRMR 64

Query: 64  KQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDINYRFP-GQSNWTCKLVKFVQPSGSF 122
                +   YF+++L+ A+     FN +    + ++  +  G   + CK   F   +  F
Sbjct: 65  -----TVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYG--LFYCKFHNFFPIAAVF 117

Query: 123 LSSYILMAIAIDRYRAICHPL 143
            S Y + A+A DRY AI HPL
Sbjct: 118 ASIYSMTAVAFDRYMAIIHPL 138
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520 Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488 Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464 Back     alignment and structure
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500 Back     alignment and structure
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349 Back     alignment and structure
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467 Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447 Back     alignment and structure
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448 Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514 Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481 Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452 Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502 Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query158
4grv_A 510 Neurotensin receptor type 1, lysozyme chimera; G-p 99.92
2ks9_A 364 Substance-P receptor; water, autodock, NK1, neurop 99.91
2rh1_A 500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 99.89
1u19_A 349 Rhodopsin; G protein-coupled receptor, membrane pr 99.89
3uon_A 467 Human M2 muscarinic acetylcholine, receptor T4 LY 99.88
2lnl_A 296 C-X-C chemokine receptor type 1; G protein coupled 99.87
4dkl_A 464 MU-type opioid receptor, lysozyme chimera; G-prote 99.87
3odu_A 502 C-X-C chemokine receptor type 4, lysozyme chimera; 99.86
3vw7_A 484 Proteinase-activated receptor 1, lysozyme; high re 99.85
4ea3_A 434 Fusion protein of nociceptin receptor and cytochr; 99.85
4eiy_A 447 Adenosine receptor A2A/soluble cytochrome B562 CH; 99.85
4amj_A 315 Beta-1 adrenergic receptor; membrane protein, 7TMR 99.85
3rze_A 452 Histamine H1 receptor, lysozyme chimera; structura 99.85
3pbl_A 481 D(3) dopamine receptor, lysozyme chimera; structur 99.85
3v2y_A 520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 99.84
3eml_A 488 Human adenosine A2A receptor/T4 lysozyme chimera; 99.84
2z73_A 448 Rhodopsin; visual pigment, GQ-type, G-protein coup 99.84
3sn6_R 514 Lysozyme, beta-2 adrenergic receptor; seven transm 99.83
1hll_A32 Alpha-2A adrenergic receptor; helix-linker-helix, 98.78
2lot_A64 Apelin receptor; membrane protein; NMR {Homo sapie 97.0
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus} Back     alignment and structure
Probab=99.92  E-value=9.8e-25  Score=176.84  Aligned_cols=125  Identities=18%  Similarity=0.301  Sum_probs=106.4

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhh--ccccc
Q psy8280          27 DEDLARIEILTLLVILIITLIGNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDIN--YRFPG  104 (158)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~g~~~N~lvi~~~~~~~~l~~~~~~~~~~~~l~~La~~Dll~~~~~~~~~~~~~~~--~~~~~  104 (158)
                      +........++|++++++|++||+++++++.+.|++|+  +|+++|+|++|||++|++.+++.+|..+...+.  ..|.+
T Consensus        28 ~~~~~v~~~~~~~~i~~~g~~gN~lvi~~i~~~~~~r~--~~~~~n~~i~~La~aDll~~~~~~p~~~~~~~~~~~~w~~  105 (510)
T 4grv_A           28 DIYSKVLVTAIYLALFVVGTVGNSVTLFTLARKKSLQS--LQSTVHYHLGSLALSDLLILLLAMPVELYNFIWVHHPWAF  105 (510)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC----C--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSSCSS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEh
Confidence            33455677889999999999999999999999988766  779999999999999999999888887766543  56888


Q ss_pred             ccccchhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhcccccccEEEEEee
Q psy8280         105 QSNWTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPLTYHTYFYLIGR  154 (158)
Q Consensus       105 ~~~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~ai~~P~~y~~~~~~~~~  154 (158)
                      | +..|++..++......+|++++++||+|||+||++|++|++..+.++.
T Consensus       106 g-~~~C~~~~~~~~~~~~~S~~~l~~is~dRy~ai~~P~~~~~~~t~~~~  154 (510)
T 4grv_A          106 G-DAGCRGYYFLRDACTYATALNVASLSVARYLAICHPFKAKTLMSRSRT  154 (510)
T ss_dssp             H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCCCCCSCC
T ss_pred             h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHheEEEecccccccccccccc
Confidence            8 889999999999999999999999999999999999999987765543
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Back     alignment and structure
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Back     alignment and structure
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Back     alignment and structure
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Back     alignment and structure
>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens} Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Back     alignment and structure
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens} Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens} Back     alignment and structure
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Back     alignment and structure
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A* Back     alignment and structure
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A Back     alignment and structure
>2lot_A Apelin receptor; membrane protein; NMR {Homo sapiens} PDB: 2lou_A 2lov_A 2low_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 158
d1u19a_ 348 f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9e-11
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.5 bits (135), Expect = 9e-11
 Identities = 20/113 (17%), Positives = 47/113 (41%), Gaps = 6/113 (5%)

Query: 38  LLVILIITLIGNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWD 97
           + +++++    N + L      +  R     + + Y +L+L++ADL            + 
Sbjct: 44  MFLLIMLGFPINFLTLYVTVQHKKLR-----TPLNYILLNLAVADLFMVFG-GFTTTLYT 97

Query: 98  INYRFPGQSNWTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPLTYHTYFY 150
             + +       C L  F    G  ++ + L+ +AI+RY  +C P++   +  
Sbjct: 98  SLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGE 150

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query158
d1u19a_ 348 Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} 99.85
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.85  E-value=5.3e-21  Score=144.84  Aligned_cols=117  Identities=18%  Similarity=0.307  Sum_probs=103.9

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcccccccc
Q psy8280          28 EDLARIEILTLLVILIITLIGNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDINYRFPGQSN  107 (158)
Q Consensus        28 ~~~~~~~~~~~~~~~~~g~~~N~lvi~~~~~~~~l~~~~~~~~~~~~l~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~  107 (158)
                      +.......+++.+++++|++||+++++++.++|+     +|++.|+++.|||++|++.++...|..+.......|..+ +
T Consensus        34 ~~~~~~~~~~~~ii~v~gi~gN~lvi~vi~~~k~-----lr~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~~~~~~-~  107 (348)
T d1u19a_          34 PWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKK-----LRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFG-P  107 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT-----CCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCTTH-H
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHeehhhhccCC-----CCCHhHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccC-c
Confidence            3345577888889999999999999999999988     889999999999999999998878877777777777777 8


Q ss_pred             cchhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhcccccccEEE
Q psy8280         108 WTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPLTYHTYFY  150 (158)
Q Consensus       108 ~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~ai~~P~~y~~~~~  150 (158)
                      ..|+...+....+..++.++++++++|||.+|++|++|+...+
T Consensus       108 ~~c~~~~~~~~~~~~~s~~~l~~is~~R~~~i~~p~~~~~~~~  150 (348)
T d1u19a_         108 TGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGE  150 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSCCCCH
T ss_pred             hhhhhhhhccccceeeecchhhhhhcccceeeecccccccccc
Confidence            8999999999999999999999999999999999999876543