Psyllid ID: psy8405

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-----
Protein Sequence
MALLKMELLGIGPFPKKRGRKRKHFSVVAEQKDLSQQSNENNQGLKSGDHENIHNVNTSKIGIKTEENPTLDGGNIKIPKKRGRKRKYPLANLIQPTSNHTPDGTVVKKKRGRKRKYPLPTVEPEEVAYKGSQHNNSVNDIVVKEKLLNDMNLGIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLVFPSENNASKQSSSQ
Secondary Structure (PSIPRED)
cccHHHHHccccccccccccccccccEEEEEcccHHHHHcccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccHHHHHHHHHcccccccccccccHHHHHccccccccccHHHHHHHHHccccccccccccccEEEcEEEEccEEEEEEEEcccccccEEcHHHHHHHccHHHHHHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHcccccccccccccccEEEEEEcccHcccccccccccccccccccccccHHHHHHHHHHccccccccccccHHccccccccccccccccHccccHHHHHHHcccHHHccccccccccccccccccccccccccHHHHHccccccccccccccHHHEEccccccccEEEEEEEccccccccccHHHHHcccccEEEEEEHHHccccccccHHHccccc
Coil and Loop (DISEMBL)
MALLKMELlgigpfpkkrgrkrkhfSVVAeqkdlsqqsnennqglksgdhenihnvntskigikteenptldggnikipkkrgrkrkyplanliqptsnhtpdgtvvkkkrgrkrkyplptvepeevaykgsqhnnsvnDIVVKEKLLndmnlgidrnlpveEIIGATIEVGFPAYLVtwegsdeadllpaeickrkypqpliRFFEQhlvfpsennaskqsssq
Flexible Loop (DISEMBL)
mallkmellgigpfpkkrgrkrKHFSVvaeqkdlsqqsnennqglksgdhenihNVNTSkigikteenptldggnikipkkrgrkRKYPlanliqptsnhtpdgtvvkkkrgrkrkyplptvepeevaykgsqhnnsvnDIVVKEKLLNDMNLGIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQhlvfpsennaskqsssq
Low Complexity Region (SEG)
MALLKMELLGIGPFPkkrgrkrkHFSVVAEQKDLSQQSNENNQGLKSGDHENIHNVNTSKIGIKTEENPTLDggnikipkkrgrkrkYPLANLIQPTSNHTPDGTVVkkkrgrkrkYPLPTVEPEEVAYKGSQHNNSVNDIVVKEKLLNDMNLGIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLVFPSENNASKQSSSQ
Disordered region (IsUnstruct)
*****************************************************************************************************************************************VNDIVVKEKLLNDMNLGIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLVF*************
Disordered Region (DISOPRED)
***LK*ELLGIG*************************************************************************************SNHTPDGTVV**************************************************NLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLV**************
Disordered Region (DISEMBL)
MALLKMELLGIGPFPKK********SVVAEQKDLSQQSNENNQGLKSGDHENIHNVNTSKIGIKTEENPTLDGGNIKIPKKRGRKRKYPLANLIQPTSNHTP***************PLPTVEPEEVAYKGSQHNNSVNDIVVKEKLLNDMNLGIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLVFPS***********
Disordered Region (DISPRO)
MALLKMELLGIGPFPKKRGRKRKHFSVVAEQKDLS***************ENIHNVNTSKIGIKTEENP*****NIKIPK************LI*********************************************************NLGIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLVFPS***********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALLKMELLGIGPFPKKRGRKRKHFSVVAEQKDLSQQSNENNQGLKSGDHENIHNVNTSKIGIKTEENPTLDGGNIKIPKKRGRKRKYPLANLIQPTSNHTPDGTVVKKKRGRKRKYPLPTVEPEEVAYKGSQHNNSVNDIVVKEKLLNDMNLGIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLVFPSENNASKQSSSQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	225	2.2.26 [Sep-21-2011]
Q61686	191	Chromobox protein homolog	yes	N/A	0.36	0.424	0.409	3e-09
P45973	191	Chromobox protein homolog	yes	N/A	0.4	0.471	0.391	4e-09
P29227	213	Heterochromatin protein 1	N/A	N/A	0.28	0.295	0.380	9e-08
P83917	185	Chromobox protein homolog	no	N/A	0.275	0.335	0.461	2e-07
P83916	185	Chromobox protein homolog	no	N/A	0.275	0.335	0.461	2e-07
P05205	206	Heterochromatin protein 1	no	N/A	0.288	0.315	0.338	1e-06
Q5R6X7	183	Chromobox protein homolog	no	N/A	0.271	0.333	0.442	4e-06
Q13185	183	Chromobox protein homolog	no	N/A	0.271	0.333	0.442	4e-06
P23198	183	Chromobox protein homolog	no	N/A	0.271	0.333	0.442	4e-06

>sp|Q61686|CBX5_MOUSE Chromobox protein homolog 5 OS=Mus musculus GN=Cbx5 PE=1 SV=1

 Score = 62.0 bits (149), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 50/83 (60%), Gaps = 2/83 (2%)

Query: 132 SQHNNSVNDIVVKEKL--LNDMNLGIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLL 189
           S  +NS +DI  K+K    ND+  G +R L  E+IIGAT   G   +L+ W+ +DEADL+
Sbjct: 92  SSFSNSADDIKSKKKREQSNDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLV 151

Query: 190 PAEICKRKYPQPLIRFFEQHLVF 212
            A+    K PQ +I F+E+ L +
Sbjct: 152 LAKEANVKCPQIVIAFYEERLTW 174

Component of heterochromatin that recognizes and binds histone H3 tails methylated at 'Lys-9' (H3K9me), leading to epigenetic repression. In contrast, it is excluded from chromatin when 'Tyr-41' of histone H3 is phosphorylated (H3Y41ph). Can interact with lamin-B receptor (LBR). This interaction can contribute to the association of the heterochromatin with the inner nuclear membrane. Involved in the formation of functional kinetochore through interaction with MIS12 complex proteins.
Mus musculus (taxid: 10090)

>sp|P45973|CBX5_HUMAN Chromobox protein homolog 5 OS=Homo sapiens GN=CBX5 PE=1 SV=1

 Score = 61.6 bits (148), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 2/92 (2%)

Query: 123 EPEEVAYKGSQHNNSVNDIVVKEKL--LNDMNLGIDRNLPVEEIIGATIEVGFPAYLVTW 180
           E  E   + S  +NS +DI  K+K    ND+  G +R L  E+IIGAT   G   +L+ W
Sbjct: 83  EKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERGLEPEKIIGATDSCGDLMFLMKW 142

Query: 181 EGSDEADLLPAEICKRKYPQPLIRFFEQHLVF 212
           + +DEADL+ A+    K PQ +I F+E+ L +
Sbjct: 143 KDTDEADLVLAKEANVKCPQIVIAFYEERLTW 174

Component of heterochromatin that recognizes and binds histone H3 tails methylated at 'Lys-9' (H3K9me), leading to epigenetic repression. In contrast, it is excluded from chromatin when 'Tyr-41' of histone H3 is phosphorylated (H3Y41ph). Can interact with lamin-B receptor (LBR). This interaction can contribute to the association of the heterochromatin with the inner nuclear membrane. Involved in the formation of functional kinetochore through interaction with MIS12 complex proteins.

Homo sapiens (taxid: 9606)

>sp|P29227|HP1_DROVI Heterochromatin protein 1 OS=Drosophila virilis GN=Su(var)205 PE=3 SV=1

 Score = 57.4 bits (137), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 42/63 (66%)

Query: 154 GIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLVFP 213
           G DR L  E+I+GA+   G   +L+ ++G D+A+++P+ +   K PQ +IRF+E+ L + 
Sbjct: 149 GFDRGLEAEKILGASDNNGRLTFLIQFKGVDQAEMVPSTVANVKIPQMVIRFYEERLSWY 208

Query: 214 SEN 216
           S+N
Sbjct: 209 SDN 211

Structural component of heterochromatin, involved in gene repression and the modification of position-effect-variegation. Recognizes and binds histone H3 tails methylated at 'Lys-9', leading to epigenetic repression.

Drosophila virilis (taxid: 7244)

>sp|P83917|CBX1_MOUSE Chromobox protein homolog 1 OS=Mus musculus GN=Cbx1 PE=1 SV=1

 Score = 55.8 bits (133), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 39/65 (60%), Gaps = 3/65 (4%)

Query: 154 GIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLV-- 211
           G  R L  E IIGAT   G   +L+ W+ SDEADL+PA+    K PQ +I F+E+ L   
Sbjct: 112 GFARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWH 171

Query: 212 -FPSE 215
            +PSE
Sbjct: 172 SYPSE 176

Component of heterochromatin. Recognizes and binds histone H3 tails methylated at 'Lys-9', leading to epigenetic repression. Interaction with lamin B receptor (LBR) can contribute to the association of the heterochromatin with the inner nuclear membrane.

Mus musculus (taxid: 10090)

>sp|P83916|CBX1_HUMAN Chromobox protein homolog 1 OS=Homo sapiens GN=CBX1 PE=1 SV=1

 Score = 55.8 bits (133), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 39/65 (60%), Gaps = 3/65 (4%)

Query: 154 GIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLV-- 211
           G  R L  E IIGAT   G   +L+ W+ SDEADL+PA+    K PQ +I F+E+ L   
Sbjct: 112 GFARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWH 171

Query: 212 -FPSE 215
            +PSE
Sbjct: 172 SYPSE 176

Component of heterochromatin. Recognizes and binds histone H3 tails methylated at 'Lys-9', leading to epigenetic repression. Interaction with lamin B receptor (LBR) can contribute to the association of the heterochromatin with the inner nuclear membrane.

Homo sapiens (taxid: 9606)

>sp|P05205|HP1_DROME Heterochromatin protein 1 OS=Drosophila melanogaster GN=Su(var)205 PE=1 SV=2

 Score = 53.5 bits (127), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 42/65 (64%)

Query: 152 NLGIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLV 211
           + G DR L  E+I+GA+   G   +L+ ++G D+A+++P+ +   K P+ +I F+E+ L 
Sbjct: 140 STGFDRGLEAEKILGASDNNGRLTFLIQFKGVDQAEMVPSSVANEKIPRMVIHFYEERLS 199

Query: 212 FPSEN 216
           + S+N
Sbjct: 200 WYSDN 204

Structural component of heterochromatin, involved in gene repression and the modification of position-effect-variegation. Recognizes and binds histone H3 tails methylated at 'Lys-9', leading to epigenetic repression.

Drosophila melanogaster (taxid: 7227)

>sp|Q5R6X7|CBX3_PONAB Chromobox protein homolog 3 OS=Pongo abelii GN=CBX3 PE=2 SV=1

 Score = 52.0 bits (123), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 36/61 (59%)

Query: 154 GIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLVFP 213
           G  R L  E IIGAT   G   +L+ W+ SDEADL+ A+    K PQ +I F+E+ L + 
Sbjct: 116 GFARGLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWH 175

Query: 214 S 214
           S
Sbjct: 176 S 176

Seems to be involved in transcriptional silencing in heterochromatin-like complexes. Recognizes and binds histone H3 tails methylated at 'Lys-9', leading to epigenetic repression. May contribute to the association of the heterochromatin with the inner nuclear membrane through its interaction with lamin B receptor (LBR). Involved in the formation of functional kinetochore through interaction with MIS12 complex proteins.

Pongo abelii (taxid: 9601)

>sp|Q13185|CBX3_HUMAN Chromobox protein homolog 3 OS=Homo sapiens GN=CBX3 PE=1 SV=4

 Score = 52.0 bits (123), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 36/61 (59%)

Query: 154 GIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLVFP 213
           G  R L  E IIGAT   G   +L+ W+ SDEADL+ A+    K PQ +I F+E+ L + 
Sbjct: 116 GFARGLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWH 175

Query: 214 S 214
           S
Sbjct: 176 S 176

Seems to be involved in transcriptional silencing in heterochromatin-like complexes. Recognizes and binds histone H3 tails methylated at 'Lys-9', leading to epigenetic repression. May contribute to the association of the heterochromatin with the inner nuclear membrane through its interaction with lamin B receptor (LBR). Involved in the formation of functional kinetochore through interaction with MIS12 complex proteins.

Homo sapiens (taxid: 9606)

>sp|P23198|CBX3_MOUSE Chromobox protein homolog 3 OS=Mus musculus GN=Cbx3 PE=1 SV=2

 Score = 51.6 bits (122), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 36/61 (59%)

Query: 154 GIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLVFP 213
           G  R L  E IIGAT   G   +L+ W+ SDEADL+ A+    K PQ +I F+E+ L + 
Sbjct: 116 GFARGLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWH 175

Query: 214 S 214
           S
Sbjct: 176 S 176

Component of heterochromatin. Recognizes and binds histone H3 tails methylated at 'Lys-9', leading to epigenetic repression. Probably involved in the repression of many genes located in euchromatin, such as E2F1, MYC and CDC25A. Involved in the formation of functional kinetochore through interaction with MIS12 complex proteins.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
225714588	201	Chromobox protein homolog 1 [Lepeophthei	0.373	0.417	0.404	2e-09
225714180	199	Chromobox protein homolog 1 [Lepeophthei	0.36	0.407	0.419	2e-09
225713868	202	Chromobox protein homolog 1 [Lepeophthei	0.373	0.415	0.404	2e-09
225712476	202	Chromobox protein homolog 1 [Lepeophthei	0.373	0.415	0.404	2e-09
225712178	201	Chromobox protein homolog 1 [Lepeophthei	0.373	0.417	0.404	2e-09
290561793	202	Chromobox protein homolog 1 [Lepeophthei	0.373	0.415	0.404	2e-09
290462581	203	Chromobox protein homolog 1 [Lepeophthei	0.373	0.413	0.404	2e-09
225713332	203	Chromobox protein homolog 1 [Lepeophthei	0.373	0.413	0.404	2e-09
225712384	203	Chromobox protein homolog 1 [Lepeophthei	0.373	0.413	0.404	2e-09
225712028	203	Chromobox protein homolog 1 [Lepeophthei	0.373	0.413	0.404	3e-09

>gi|225714588|gb|ACO13140.1| Chromobox protein homolog 1 [Lepeophtheirus salmonis]

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 49/84 (58%)

Query: 133 QHNNSVNDIVVKEKLLNDMNLGIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAE 192
           +  +S N+     K  +D   G DRNL  E IIGAT   G   +L+ W+GSDEADL+PA 
Sbjct: 111 KSTSSSNEKSKSRKADDDRPRGFDRNLDPERIIGATDSSGELMFLIKWKGSDEADLVPAR 170

Query: 193 ICKRKYPQPLIRFFEQHLVFPSEN 216
               + PQ +I+F+E+ L + + N
Sbjct: 171 EANVRCPQTVIKFYEERLTWHTSN 194

Source: Lepeophtheirus salmonis

Species: Lepeophtheirus salmonis

Genus: Lepeophtheirus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|225714180|gb|ACO12936.1| Chromobox protein homolog 1 [Lepeophtheirus salmonis]

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 48/81 (59%)

Query: 136 NSVNDIVVKEKLLNDMNLGIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICK 195
           +S N+     K  +D   G DRNL  E IIGAT   G   +L+ W+GSDEADL+PA    
Sbjct: 112 SSSNEKSKSRKADDDRPRGFDRNLDPEHIIGATDSSGELMFLIKWKGSDEADLVPAREAN 171

Query: 196 RKYPQPLIRFFEQHLVFPSEN 216
            + PQ +I+F+E+ L + + N
Sbjct: 172 VRCPQTVIKFYEERLTWHTSN 192

Source: Lepeophtheirus salmonis

Species: Lepeophtheirus salmonis

Genus: Lepeophtheirus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|225713868|gb|ACO12780.1| Chromobox protein homolog 1 [Lepeophtheirus salmonis]

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 49/84 (58%)

Query: 133 QHNNSVNDIVVKEKLLNDMNLGIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAE 192
           +  +S N+     K  +D   G DRNL  E IIGAT   G   +L+ W+GSDEADL+PA 
Sbjct: 112 KSTSSSNEKSKSRKADDDRPRGFDRNLDPERIIGATDSSGELMFLIKWKGSDEADLVPAR 171

Query: 193 ICKRKYPQPLIRFFEQHLVFPSEN 216
               + PQ +I+F+E+ L + + N
Sbjct: 172 EANVRCPQTVIKFYEERLTWHTSN 195

Source: Lepeophtheirus salmonis

Species: Lepeophtheirus salmonis

Genus: Lepeophtheirus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|225712476|gb|ACO12084.1| Chromobox protein homolog 1 [Lepeophtheirus salmonis]

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 49/84 (58%)

Query: 133 QHNNSVNDIVVKEKLLNDMNLGIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAE 192
           +  +S N+     K  +D   G DRNL  E IIGAT   G   +L+ W+GSDEADL+PA 
Sbjct: 112 KSTSSSNEKSKSRKADDDRPRGFDRNLDPERIIGATDSSGELMFLIKWKGSDEADLVPAR 171

Query: 193 ICKRKYPQPLIRFFEQHLVFPSEN 216
               + PQ +I+F+E+ L + + N
Sbjct: 172 EANVRCPQTVIKFYEERLTWHTSN 195

Source: Lepeophtheirus salmonis

Species: Lepeophtheirus salmonis

Genus: Lepeophtheirus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|225712178|gb|ACO11935.1| Chromobox protein homolog 1 [Lepeophtheirus salmonis]

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 49/84 (58%)

Query: 133 QHNNSVNDIVVKEKLLNDMNLGIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAE 192
           +  +S N+     K  +D   G DRNL  E IIGAT   G   +L+ W+GSDEADL+PA 
Sbjct: 111 KSTSSSNEKSKSRKADDDRPRGFDRNLDPERIIGATDSSGELMFLIKWKGSDEADLVPAR 170

Query: 193 ICKRKYPQPLIRFFEQHLVFPSEN 216
               + PQ +I+F+E+ L + + N
Sbjct: 171 EANVRCPQTVIKFYEERLTWHTSN 194

Source: Lepeophtheirus salmonis

Species: Lepeophtheirus salmonis

Genus: Lepeophtheirus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|290561793|gb|ADD38294.1| Chromobox protein homolog 1 [Lepeophtheirus salmonis]

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 49/84 (58%)

Query: 133 QHNNSVNDIVVKEKLLNDMNLGIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAE 192
           +  +S N+     K  +D   G DRNL  E IIGAT   G   +L+ W+GSDEADL+PA 
Sbjct: 112 KSTSSSNEKSKSRKADDDRPRGFDRNLDPERIIGATDSSGELMFLIKWKGSDEADLVPAR 171

Query: 193 ICKRKYPQPLIRFFEQHLVFPSEN 216
               + PQ +I+F+E+ L + + N
Sbjct: 172 EANVRCPQTVIKFYEERLTWHTSN 195

Source: Lepeophtheirus salmonis

Species: Lepeophtheirus salmonis

Genus: Lepeophtheirus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|290462581|gb|ADD24338.1| Chromobox protein homolog 1 [Lepeophtheirus salmonis]

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 49/84 (58%)

Query: 133 QHNNSVNDIVVKEKLLNDMNLGIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAE 192
           +  +S N+     K  +D   G DRNL  E IIGAT   G   +L+ W+GSDEADL+PA 
Sbjct: 113 KSTSSSNEKSKSRKADDDRPRGFDRNLDPERIIGATDSSGELMFLIKWKGSDEADLVPAR 172

Query: 193 ICKRKYPQPLIRFFEQHLVFPSEN 216
               + PQ +I+F+E+ L + + N
Sbjct: 173 EANVRCPQTVIKFYEERLTWHTSN 196

Source: Lepeophtheirus salmonis

Species: Lepeophtheirus salmonis

Genus: Lepeophtheirus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|225713332|gb|ACO12512.1| Chromobox protein homolog 1 [Lepeophtheirus salmonis]

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 49/84 (58%)

Query: 133 QHNNSVNDIVVKEKLLNDMNLGIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAE 192
           +  +S N+     K  +D   G DRNL  E IIGAT   G   +L+ W+GSDEADL+PA 
Sbjct: 113 KSTSSSNEKSKSRKADDDRPRGFDRNLDPERIIGATDSSGELMFLIKWKGSDEADLVPAR 172

Query: 193 ICKRKYPQPLIRFFEQHLVFPSEN 216
               + PQ +I+F+E+ L + + N
Sbjct: 173 EANVRCPQTVIKFYEERLTWHTSN 196

Source: Lepeophtheirus salmonis

Species: Lepeophtheirus salmonis

Genus: Lepeophtheirus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|225712384|gb|ACO12038.1| Chromobox protein homolog 1 [Lepeophtheirus salmonis]

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 49/84 (58%)

Query: 133 QHNNSVNDIVVKEKLLNDMNLGIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAE 192
           +  +S N+     K  +D   G DRNL  E IIGAT   G   +L+ W+GSDEADL+PA 
Sbjct: 113 KSTSSSNEKSKSRKADDDRPRGFDRNLDPERIIGATDSSGELMFLIKWKGSDEADLVPAR 172

Query: 193 ICKRKYPQPLIRFFEQHLVFPSEN 216
               + PQ +I+F+E+ L + + N
Sbjct: 173 EANVRCPQTVIKFYEERLTWHTSN 196

Source: Lepeophtheirus salmonis

Species: Lepeophtheirus salmonis

Genus: Lepeophtheirus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|225712028|gb|ACO11860.1| Chromobox protein homolog 1 [Lepeophtheirus salmonis]

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 49/84 (58%)

Query: 133 QHNNSVNDIVVKEKLLNDMNLGIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAE 192
           +  +S N+     K  +D   G DRNL  E IIGAT   G   +L+ W+GSDEADL+PA 
Sbjct: 113 KSTSSSNEKSKSRKADDDRPRGFDRNLDPERIIGATDSSGELMFLIKWKGSDEADLVPAR 172

Query: 193 ICKRKYPQPLIRFFEQHLVFPSEN 216
               + PQ +I+F+E+ L + + N
Sbjct: 173 EANVRCPQTVIKFYEERLTWHTSN 196

Source: Lepeophtheirus salmonis

Species: Lepeophtheirus salmonis

Genus: Lepeophtheirus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
UNIPROTKB|G3V1X9	190	CBX5 "Chromobox protein homolo	0.448	0.531	0.367	9.4e-11
MGI|MGI:109372	191	Cbx5 "chromobox 5" [Mus muscul	0.448	0.528	0.373	9.4e-11
RGD|1306619	191	Cbx5 "chromobox homolog 5" [Ra	0.448	0.528	0.373	9.4e-11
UNIPROTKB|F2Z4J7	191	CBX5 "Uncharacterized protein"	0.448	0.528	0.364	1.5e-10
UNIPROTKB|P45973	191	CBX5 "Chromobox protein homolo	0.448	0.528	0.364	1.5e-10
UNIPROTKB|F2Z5T3	191	LOC100519426 "Uncharacterized	0.448	0.528	0.364	1.5e-10
ZFIN|ZDB-GENE-030131-1158	177	cbx3a "chromobox homolog 3a (H	0.408	0.519	0.387	1.5e-10
UNIPROTKB|E2QYK6	191	CBX5 "Uncharacterized protein"	0.448	0.528	0.355	3.2e-10
UNIPROTKB|I3LQ28	190	I3LQ28 "Uncharacterized protei	0.444	0.526	0.364	6.6e-10
UNIPROTKB|G5E6N7	185	CBX1 "Uncharacterized protein"	0.36	0.437	0.392	1.4e-09

UNIPROTKB|G3V1X9 CBX5 "Chromobox protein homolog 5" [Homo sapiens (taxid:9606)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 39/106 (36%), Positives = 60/106 (56%)

Query:   123 EPEEVAYKGSQHNNSVNDIVVKEKL-LNDMNLGIDRNLPVEEIIGATIEVGFPAYLVTWE 181
             E  E   + S  +NS +DI  K+K   ND+  G +R L  E+IIGAT   G   +L+ W+
Sbjct:    83 EKSESNKRKSNFSNSADDIKSKKKRESNDIARGFERGLEPEKIIGATDSCGDLMFLMKWK 142

Query:   182 GSDEADLLPAEICKRKYPQPLIRFFEQHLV---FPSE-NNASKQSS 223
              +DEADL+ A+    K PQ +I F+E+ L    +P +  N  K+++
Sbjct:   143 DTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPEDAENKEKETA 188

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

MGI|MGI:109372 Cbx5 "chromobox 5" [Mus musculus (taxid:10090)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 40/107 (37%), Positives = 60/107 (56%)

Query:   123 EPEEVAYKGSQHNNSVNDIVVKEKL--LNDMNLGIDRNLPVEEIIGATIEVGFPAYLVTW 180
             E  E   + S  +NS +DI  K+K    ND+  G +R L  E+IIGAT   G   +L+ W
Sbjct:    83 EKSEGNKRKSSFSNSADDIKSKKKREQSNDIARGFERGLEPEKIIGATDSCGDLMFLMKW 142

Query:   181 EGSDEADLLPAEICKRKYPQPLIRFFEQHLV---FPSE-NNASKQSS 223
             + +DEADL+ A+    K PQ +I F+E+ L    +P +  N  K+S+
Sbjct:   143 KDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPEDAENKEKESA 189

GO:0000118 "histone deacetylase complex" evidence=IDA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0000776 "kinetochore" evidence=IDA

GO:0000792 "heterochromatin" evidence=IDA

GO:0003682 "chromatin binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005694 "chromosome" evidence=IEA

GO:0005720 "nuclear heterochromatin" evidence=IDA

GO:0005730 "nucleolus" evidence=ISO;IDA

GO:0010369 "chromocenter" evidence=IDA

GO:0017053 "transcriptional repressor complex" evidence=IDA

GO:0019899 "enzyme binding" evidence=ISO

GO:0030674 "protein binding, bridging" evidence=IPI

GO:0035064 "methylated histone residue binding" evidence=ISO

GO:0035097 "histone methyltransferase complex" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0042826 "histone deacetylase binding" evidence=IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO;IDA

GO:0070491 "repressing transcription factor binding" evidence=IPI

RGD|1306619 Cbx5 "chromobox homolog 5" [Rattus norvegicus (taxid:10116)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 40/107 (37%), Positives = 60/107 (56%)

Query:   123 EPEEVAYKGSQHNNSVNDIVVKEKL--LNDMNLGIDRNLPVEEIIGATIEVGFPAYLVTW 180
             E  E   + S  +NS +DI  K+K    ND+  G +R L  E+IIGAT   G   +L+ W
Sbjct:    83 EKSEGNKRKSSFSNSADDIKSKKKREQSNDIARGFERGLEPEKIIGATDSCGDLMFLMKW 142

Query:   181 EGSDEADLLPAEICKRKYPQPLIRFFEQHLV---FPSE-NNASKQSS 223
             + +DEADL+ A+    K PQ +I F+E+ L    +P +  N  K+S+
Sbjct:   143 KDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPEDAENKEKESA 189

GO:0000118 "histone deacetylase complex" evidence=IEA;ISO

GO:0000776 "kinetochore" evidence=IEA;ISO

GO:0000792 "heterochromatin" evidence=ISO

GO:0003682 "chromatin binding" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005720 "nuclear heterochromatin" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0010369 "chromocenter" evidence=IEA;ISO

GO:0016605 "PML body" evidence=IEA;ISO

GO:0017053 "transcriptional repressor complex" evidence=IEA;ISO

GO:0019899 "enzyme binding" evidence=ISO

GO:0030674 "protein binding, bridging" evidence=IEA;ISO

GO:0035064 "methylated histone residue binding" evidence=IEA;ISO

GO:0035097 "histone methyltransferase complex" evidence=IEA;ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0042826 "histone deacetylase binding" evidence=IEA;ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA;ISO

GO:0070491 "repressing transcription factor binding" evidence=IEA;ISO

UNIPROTKB|F2Z4J7 CBX5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 39/107 (36%), Positives = 60/107 (56%)

Query:   123 EPEEVAYKGSQHNNSVNDIVVKEKL--LNDMNLGIDRNLPVEEIIGATIEVGFPAYLVTW 180
             E  E   + S  +NS +DI  K+K    ND+  G +R L  E+IIGAT   G   +L+ W
Sbjct:    83 EKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERGLEPEKIIGATDSCGDLMFLMKW 142

Query:   181 EGSDEADLLPAEICKRKYPQPLIRFFEQHLV---FPSE-NNASKQSS 223
             + +DEADL+ A+    K PQ +I F+E+ L    +P +  N  K+++
Sbjct:   143 KDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPEDAENKEKETA 189

GO:0070491 "repressing transcription factor binding" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0035097 "histone methyltransferase complex" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=IEA

GO:0030674 "protein binding, bridging" evidence=IEA

GO:0017053 "transcriptional repressor complex" evidence=IEA

GO:0016605 "PML body" evidence=IEA

GO:0010369 "chromocenter" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005720 "nuclear heterochromatin" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

GO:0000118 "histone deacetylase complex" evidence=IEA

UNIPROTKB|P45973 CBX5 "Chromobox protein homolog 5" [Homo sapiens (taxid:9606)]

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 39/107 (36%), Positives = 60/107 (56%)

Query:   123 EPEEVAYKGSQHNNSVNDIVVKEKL--LNDMNLGIDRNLPVEEIIGATIEVGFPAYLVTW 180
             E  E   + S  +NS +DI  K+K    ND+  G +R L  E+IIGAT   G   +L+ W
Sbjct:    83 EKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERGLEPEKIIGATDSCGDLMFLMKW 142

Query:   181 EGSDEADLLPAEICKRKYPQPLIRFFEQHLV---FPSE-NNASKQSS 223
             + +DEADL+ A+    K PQ +I F+E+ L    +P +  N  K+++
Sbjct:   143 KDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPEDAENKEKETA 189

GO:0019048 "virus-host interaction" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0010369 "chromocenter" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP;IDA

GO:0035064 "methylated histone residue binding" evidence=IDA

GO:0019899 "enzyme binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005720 "nuclear heterochromatin" evidence=TAS

GO:0005635 "nuclear envelope" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0031618 "nuclear centromeric heterochromatin" evidence=NAS

GO:0000118 "histone deacetylase complex" evidence=ISS

GO:0017053 "transcriptional repressor complex" evidence=ISS

GO:0035097 "histone methyltransferase complex" evidence=ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0016605 "PML body" evidence=IMP

GO:0070491 "repressing transcription factor binding" evidence=ISS

GO:0030674 "protein binding, bridging" evidence=ISS

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F2Z5T3 LOC100519426 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 39/107 (36%), Positives = 60/107 (56%)

Query:   123 EPEEVAYKGSQHNNSVNDIVVKEKL--LNDMNLGIDRNLPVEEIIGATIEVGFPAYLVTW 180
             E  E   + S  +NS +DI  K+K    ND+  G +R L  E+IIGAT   G   +L+ W
Sbjct:    83 EKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERGLEPEKIIGATDSCGDLMFLMKW 142

Query:   181 EGSDEADLLPAEICKRKYPQPLIRFFEQHLV---FPSE-NNASKQSS 223
             + +DEADL+ A+    K PQ +I F+E+ L    +P +  N  K+++
Sbjct:   143 KDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPEDAENKEKETA 189

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-030131-1158 cbx3a "chromobox homolog 3a (HP1 gamma homolog, Drosophila)" [Danio rerio (taxid:7955)]

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 36/93 (38%), Positives = 49/93 (52%)

Query:   123 EPEEVAYKGSQHNNSVNDIVVKEKL-LNDMNLGIDRNLPVEEIIGATIEVGFPAYLVTWE 181
             +PE V  K S       +   K K  ++D   G  RNL  E IIGAT   G   +L+ W+
Sbjct:    78 KPEAVKRKSSTDEPETEESKAKRKKEMSDKPRGFARNLEPERIIGATDSSGELMFLMKWK 137

Query:   182 GSDEADLLPAEICKRKYPQPLIRFFEQHLVFPS 214
              SDEADL+PA     + PQ +I F+E+ L + S
Sbjct:   138 DSDEADLVPAREANTRCPQIVIAFYEERLTWHS 170

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E2QYK6 CBX5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 38/107 (35%), Positives = 60/107 (56%)

Query:   123 EPEEVAYKGSQHNNSVNDIVVKEKL--LNDMNLGIDRNLPVEEIIGATIEVGFPAYLVTW 180
             E  E   + S  +N+ +DI  K+K    ND+  G +R L  E+IIGAT   G   +L+ W
Sbjct:    83 EKSESNKRKSNFSNNADDIKSKKKREQSNDIARGFERGLEPEKIIGATDSCGDLMFLMKW 142

Query:   181 EGSDEADLLPAEICKRKYPQPLIRFFEQHLV---FPSE-NNASKQSS 223
             + +DEADL+ A+    K PQ +I F+E+ L    +P +  N  K+++
Sbjct:   143 KDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPEDAENKEKETA 189

GO:0070491 "repressing transcription factor binding" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0035097 "histone methyltransferase complex" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=IEA

GO:0030674 "protein binding, bridging" evidence=IEA

GO:0017053 "transcriptional repressor complex" evidence=IEA

GO:0016605 "PML body" evidence=IEA

GO:0010369 "chromocenter" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005720 "nuclear heterochromatin" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

GO:0000118 "histone deacetylase complex" evidence=IEA

UNIPROTKB|I3LQ28 I3LQ28 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 39/107 (36%), Positives = 60/107 (56%)

Query:   123 EPEEVAYKGSQHNNSVNDIVVKEKL--LNDMNLGIDRNLPVEEIIGATIEVGFPAYLVTW 180
             E  E   + S  +NS +DI  K+K    ND+  G +R  P E+IIGAT   G   +L+ W
Sbjct:    83 EKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERGEP-EKIIGATDSCGDLMFLMKW 141

Query:   181 EGSDEADLLPAEICKRKYPQPLIRFFEQHLV---FPSE-NNASKQSS 223
             + +DEADL+ A+    K PQ +I F+E+ L    +P +  N  K+++
Sbjct:   142 KDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPEDAENKEKETA 188

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|G5E6N7 CBX1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 33/84 (39%), Positives = 48/84 (57%)

Query:   144 KEKLLNDMNLGIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLI 203
             K+K  ++   G  R L  E IIGAT   G   +L+ W+ SDEADL+PA+    K PQ +I
Sbjct:   102 KKKEESEKPRGFARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVI 161

Query:   204 RFFEQHLV---FPSENNASKQSSS 224
              F+E+ L    +PSE++  K   +
Sbjct:   162 SFYEERLTWHSYPSEDDDKKDDKN 185

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0010369 "chromocenter" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0005721 "centromeric heterochromatin" evidence=IEA

GO:0001940 "male pronucleus" evidence=IEA

GO:0001939 "female pronucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	225
pfam01393	57	pfam01393, Chromo_shadow, Chromo shadow domain	1e-08
smart00300	61	smart00300, ChSh, Chromo Shadow Domain	2e-07
cd00034	54	cd00034, ChSh, Chromo Shadow Domain, found in asso	1e-05

>gnl|CDD|201767 pfam01393, Chromo_shadow, Chromo shadow domain

 Score = 49.7 bits (119), Expect = 1e-08
 Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 1/56 (1%)

Query: 157 RNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLVF 212
           R L +E+I+GAT   G   +L  ++  DEADL+PA+    K PQ +I F+E+ L +
Sbjct: 1   RGLELEKIVGATDSPGELHFLCKFKD-DEADLVPAKEANVKCPQQVIAFYEERLTW 55

This domain is distantly related to pfam00385. This domain is always found in association with a chromo domain. Length = 57

>gnl|CDD|197638 smart00300, ChSh, Chromo Shadow Domain

 Score = 46.2 bits (110), Expect = 2e-07
 Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 1/61 (1%)

Query: 154 GIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLVFP 213
           G +R    E+I+GAT + G   +L+ W+  D A L+P++    K PQ +IRF+E+HL F 
Sbjct: 2   GFERGKSWEDIVGATKDDGELTFLIKWKD-DAASLVPSKEANVKCPQMVIRFYEEHLTFQ 60

Query: 214 S 214
           S
Sbjct: 61  S 61

Length = 61

>gnl|CDD|237998 cd00034, ChSh, Chromo Shadow Domain, found in association with N-terminal chromo (CHRromatin Organization MOdifier) domain; Chromo domains mediate the interaction of the heterochromatin with other heterochromatin proteins, thereby affecting chromatin structure (e

 Score = 41.2 bits (97), Expect = 1e-05
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 161 VEEIIGATI-EVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLVF 212
           V+ I GA+  + G   +L  W+   +A L+P +    K P  +I F+E+HL +
Sbjct: 2   VKPISGASKSDDGELTFLAKWKD-GQASLVPNKELNVKCPLLVISFYEEHLTY 53

g. Drosophila and human heterochromatin protein (HP1) and mammalian modifier 1 and modifier 2). Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	225
smart00300	61	ChSh Chromo Shadow Domain.	99.92
PF01393	58	Chromo_shadow: Chromo shadow domain Web page maint	99.91
cd00034	54	ChSh Chromo Shadow Domain, found in association wi	99.84
KOG1911|consensus	270		99.67
smart00298	55	CHROMO Chromatin organization modifier domain.	98.27
PF00385	55	Chromo: Chromo (CHRromatin Organisation MOdifier)	97.72
cd00024	55	CHROMO Chromatin organization modifier (chromo) do	97.55
PF00385	55	Chromo: Chromo (CHRromatin Organisation MOdifier)	96.28
KOG1911|consensus	270		96.25
cd00024	55	CHROMO Chromatin organization modifier (chromo) do	94.16
KOG2748|consensus	369		93.06
KOG2748|consensus	369		92.4
smart00298	55	CHROMO Chromatin organization modifier domain.	92.11

>smart00300 ChSh Chromo Shadow Domain

Probab=99.92  E-value=9.5e-26  Score=162.22  Aligned_cols=61  Identities=38%  Similarity=0.674  Sum_probs=59.3

Q ss_pred             CCCCCCCcccceeeeeeeCCceEEEEEeCCCCCcceeehhHHHhhCCHHHHHHHHhhccCCC
Q psy8405         153 LGIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLVFPS  214 (225)
Q Consensus       153 ~GF~RGLepEkIIGatd~~GeL~FLVKWKg~de~DlVpA~eaneKcPQmVIkFYEerL~w~~  214 (225)
                      .||+||+++|+|||+++.+|+|+|||+|+| +++++||+.+||.+|||+||+|||+||+|++
T Consensus         1 ~gf~~g~~~e~Ivg~~d~~G~l~flikwk~-~~~~lVp~~~~~~k~P~~vI~FYE~~l~~~~   61 (61)
T smart00300        1 KDEERGKSWEDIVGITKDDGELTFLIKWKD-DAASLVPNKEANVKCPQKVIRFYESHLTFQS   61 (61)
T ss_pred             CccccCCCHHHHhceecCCCeEEEEEEEeC-CcEEEEEHHHHHHHChHHHHHHHHHhCccCC
Confidence            389999999999999999999999999999 9999999999999999999999999999974

>PF01393 Chromo_shadow: Chromo shadow domain Web page maintained by Rein Aasland; InterPro: IPR008251 Chromo shadow domain is distantly related to chromo domain

Probab=99.91  E-value=4.2e-25  Score=158.07  Aligned_cols=58  Identities=45%  Similarity=0.775  Sum_probs=55.6

Q ss_pred             CCCcccceeeeeeeCCceEEEEEeCCCCCcceeehhHHHhhCCHHHHHHHHhhccCCC
Q psy8405         157 RNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLVFPS  214 (225)
Q Consensus       157 RGLepEkIIGatd~~GeL~FLVKWKg~de~DlVpA~eaneKcPQmVIkFYEerL~w~~  214 (225)
                      ||+++|+|||+++.+|+|+|||+||+++++++||+.+||.+|||+||+|||+||+|++
T Consensus         1 rgl~~E~Ivg~~d~~G~l~~likwk~~~~~~~v~~~~~~~k~Pq~vI~FYE~~l~f~~   58 (58)
T PF01393_consen    1 RGLEWEKIVGATDTNGELMFLIKWKNSGEKDLVPSKEANEKCPQKVIKFYESHLVFKS   58 (58)
T ss_dssp             GT-TEEEEEEEEECTSSEEEEEEETTSSSEEEEEHHHHHHHSHHHHHHHHHHTCEEEE
T ss_pred             CCCChHHHheeecCCCcEEEEEEECCCCceEEeeHHHHHHHCcHHHHHHHHHHeeecC
Confidence            7999999999999999999999999999999999999999999999999999999974

It is always found in association with a chromo domain. The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain [], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1); and mammalian modifier 1 and modifier 2. The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigenand and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1.; GO: 0005634 nucleus; PDB: 3Q6S_C 2FMM_B 3P7J_B 1E0B_B 3I3C_A 1DZ1_B 1S4Z_A 3KUP_D.

>cd00034 ChSh Chromo Shadow Domain, found in association with N-terminal chromo (CHRromatin Organization MOdifier) domain; Chromo domains mediate the interaction of the heterochromatin with other heterochromatin proteins, thereby affecting chromatin structure (e

Probab=99.84  E-value=2.8e-21  Score=136.35  Aligned_cols=53  Identities=32%  Similarity=0.584  Sum_probs=50.6

Q ss_pred             cccceeeeeeeC-CceEEEEEeCCCCCcceeehhHHHhhCCHHHHHHHHhhccCC
Q psy8405         160 PVEEIIGATIEV-GFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLVFP  213 (225)
Q Consensus       160 epEkIIGatd~~-GeL~FLVKWKg~de~DlVpA~eaneKcPQmVIkFYEerL~w~  213 (225)
                      .+++|+|+++.+ |+|+|||+|+| +++++||+++||.+|||+||+|||+||+|+
T Consensus         1 ~~~~I~gat~~~~g~l~fl~kwk~-~~~~lVp~~~~~~k~P~~vI~FYE~~l~~~   54 (54)
T cd00034           1 LVKPISGASKSDDGELTFLAKWKD-GQASLVPNKELNVKCPLLVISFYEEHLTYN   54 (54)
T ss_pred             CceEEEEEEEcCCCeEEEEEEEeC-CeEEEEEHHHHHhhCcHHHHHHHHHhcccC
Confidence            378999999877 99999999999 999999999999999999999999999996

g. Drosophila and human heterochromatin protein (HP1) and mammalian modifier 1 and modifier 2)

>KOG1911|consensus

Probab=99.67  E-value=3.3e-17  Score=144.87  Aligned_cols=146  Identities=22%  Similarity=0.193  Sum_probs=99.9

Q ss_pred             cccCCCCCCCCCCC-CCCchHHHHhhhcCCCcCCCCccc-ccccCCCCcCccccccCCCCCCCCCcceeeeecccccCCC
Q psy8405          41 NNQGLKSGDHENIH-NVNTSKIGIKTEENPTLDGGNIKI-PKKRGRKRKYPLANLIQPTSNHTPDGTVVKKKRGRKRKYP  118 (225)
Q Consensus        41 ~~~~~~~ntWEp~~-nL~c~~lI~~~e~~~~~~~~~~k~-~~kr~~k~~~~~~~~~q~~~~~~~~~~~~~k~~~~k~~~p  118 (225)
                      +.|.--+|||||++ |++|++||.+|+....   ..++. ..++-.    +......      ..        .+    -
T Consensus        71 ~Gy~~~~ntWEPee~~~~C~~li~~~~~~~~---~~k~~~~~~~~~----~~~~~~~------~~--------~~----~  125 (270)
T KOG1911|consen   71 KGYPDPDNTWEPEEHNLDCPELIDEFEKSQK---KLKKKSKLKRTS----RSSSNKA------KE--------ET----S  125 (270)
T ss_pred             CCCCCccccCCchhhccccHHHHHHHHHHhc---ccCccccccccc----ccccccc------cc--------cc----c
Confidence            45667799999999 9999999999999433   22222 111110    0100000      00        00    0


Q ss_pred             CCCCChhhhhhhcccCCCCcchhHHHHHhhhccCCCCCCCCcccceeeeeeeCCceEEEEEeCCC-----CCcceeehhH
Q psy8405         119 LPTVEPEEVAYKGSQHNNSVNDIVVKEKLLNDMNLGIDRNLPVEEIIGATIEVGFPAYLVTWEGS-----DEADLLPAEI  193 (225)
Q Consensus       119 ~~~s~~~~~~~~~~~~~nses~~~kKk~e~~~~~~GF~RGLepEkIIGatd~~GeL~FLVKWKg~-----de~DlVpA~e  193 (225)
                      .+.+..        ++.++......++........+|++|+.+.+|+++++.+|.++||++|..+     +.++++|+.+
T Consensus       126 ~S~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (270)
T KOG1911|consen  126 RSTSDE--------KSKSSPKKSVKKKKEKSKKSKGFPRGKEGKRIAGAKKSSGKLMFLMKSSKELSEPKDEADLTPAKE  197 (270)
T ss_pred             cccccc--------ccccccccccccccchhcccccccccccchhhhccccCCcchhhhhcCCccccccCCccccccccc
Confidence            011111        011111112223344557789999999999999999999999999999997     8899999999


Q ss_pred             HHhhCCHHHHHHHHhhccCCCCCchh
Q psy8405         194 CKRKYPQPLIRFFEQHLVFPSENNAS  219 (225)
Q Consensus       194 aneKcPQmVIkFYEerL~w~~~~~~~  219 (225)
                      ++.+||++||+|||.++.|+....+.
T Consensus       198 ~~~~~p~~~~~~~E~~~~~~~~~~~~  223 (270)
T KOG1911|consen  198 KSSKCPQVVIDFYEERLEDQETPKDE  223 (270)
T ss_pred             ccccCCcchhHHHHhccccccccccc
Confidence            99999999999999999999866654

>smart00298 CHROMO Chromatin organization modifier domain

Probab=98.27  E-value=1.6e-06  Score=58.01  Aligned_cols=49  Identities=24%  Similarity=0.353  Sum_probs=43.2

Q ss_pred             Ccccceeeee-eeCCceEEEEEeCCCCC--cceeehhHHHhhCCHHHHHHHHh
Q psy8405         159 LPVEEIIGAT-IEVGFPAYLVTWEGSDE--ADLLPAEICKRKYPQPLIRFFEQ  208 (225)
Q Consensus       159 LepEkIIGat-d~~GeL~FLVKWKg~de--~DlVpA~eaneKcPQmVIkFYEe  208 (225)
                      +.+++|++.. ..+|.+.|||+|+|.+.  ..++|+..+.. ||.+|.+|++.
T Consensus         2 ~~v~~Il~~r~~~~~~~~ylVkW~g~~~~~~tW~~~~~l~~-~~~~v~~~~~~   53 (55)
T smart00298        2 YEVEKILDHRWKKKGELEYLVKWKGYSYSEDTWEPEENLLN-CSKKLDNYKKK   53 (55)
T ss_pred             cchheeeeeeecCCCcEEEEEEECCCCCccCceeeHHHHHH-HHHHHHHHHHh
Confidence            4589999998 88899999999999765  57999988887 99999999985

>PF00385 Chromo: Chromo (CHRromatin Organisation MOdifier) domain; InterPro: IPR023780 The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation

Probab=97.72  E-value=4.5e-05  Score=52.08  Aligned_cols=49  Identities=29%  Similarity=0.447  Sum_probs=39.8

Q ss_pred             CcccceeeeeeeCCce---EEEEEeCCCCC--cceeehhHHHhhCCHHHHHHHH
Q psy8405         159 LPVEEIIGATIEVGFP---AYLVTWEGSDE--ADLLPAEICKRKYPQPLIRFFE  207 (225)
Q Consensus       159 LepEkIIGatd~~GeL---~FLVKWKg~de--~DlVpA~eaneKcPQmVIkFYE  207 (225)
                      ++|++||+....++..   .|||||+|...  ..++|...+...+|.+|-+|.+
T Consensus         1 ~~Ve~Il~~r~~~~~~~~~~ylVkW~g~~~~~~tWe~~~~l~~~~~~li~~f~~   54 (55)
T PF00385_consen    1 YEVERILDHRVVKGGNKVYEYLVKWKGYPYSENTWEPEENLKNCFPELIEEFEK   54 (55)
T ss_dssp             EEEEEEEEEEEETTEESEEEEEEEETTSSGGGEEEEEGGGCSSHCHHHHHHHHH
T ss_pred             CEEEEEEEEEEeCCCcccEEEEEEECCCCCCCCeEeeHHHHhHhhHHHHHHHhC
Confidence            3689999998766666   99999999754  4699999888888999777654

These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain, with weak but significant sequence similarity to the N-terminal chromo domain,[], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1). The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigen and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1. Functional dissections of chromo domain proteins suggests a mechanistic role for chromo domains in targeting chromo domain proteins to specific regions of the nucleus. The mechanism of targeting may involve protein-protein and/or protein/nucleic acid interactions. Hence, several line of evidence show that the HP1 chromo domain is a methyl-specific histone binding module, whereas the chromo domain of two protein components of the drosophila dosage compensation complex, MSL3 and MOF, contain chromo domains that bind to RNA in vitro []. The high resolution structures of HP1-family protein chromo and chromo shadow domain reveal a conserved chromo domain fold motif consisting of three beta strands packed against an alpha helix. The chromo domain fold belongs to the OB (oligonucleotide/oligosaccharide binding)-fold class found in a variety of prokaryotic and eukaryotic nucleic acid binding protein [].; PDB: 2H1E_B 3MWY_W 2DY8_A 1KNE_A 1KNA_A 1Q3L_A 2EE1_A 1AP0_A 1GUW_A 1X3P_A ....

>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus

Probab=97.55  E-value=0.00012  Score=49.08  Aligned_cols=47  Identities=28%  Similarity=0.379  Sum_probs=38.5

Q ss_pred             CcccceeeeeeeC--CceEEEEEeCCCC--CcceeehhHHHhhCCHHHHHHH
Q psy8405         159 LPVEEIIGATIEV--GFPAYLVTWEGSD--EADLLPAEICKRKYPQPLIRFF  206 (225)
Q Consensus       159 LepEkIIGatd~~--GeL~FLVKWKg~d--e~DlVpA~eaneKcPQmVIkFY  206 (225)
                      +++++|++.....  |.+.|||+|+|..  ...++|+..+... +.+|-+|.
T Consensus         3 ~~ve~Il~~r~~~~~~~~~y~VkW~g~~~~~~tWe~~~~l~~~-~~~i~~~~   53 (55)
T cd00024           3 YEVEKILDHRKKKDGGEYEYLVKWKGYSYSEDTWEPEENLEDC-KELIDEFK   53 (55)
T ss_pred             ceEeeeeeeeecCCCCcEEEEEEECCCCCccCccccHHHhCch-HHHHHHHH
Confidence            4679999998776  8999999999987  6679999988765 67776664

Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.

>PF00385 Chromo: Chromo (CHRromatin Organisation MOdifier) domain; InterPro: IPR023780 The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation

Probab=96.28  E-value=0.00091  Score=45.63  Aligned_cols=27  Identities=11%  Similarity=0.044  Sum_probs=23.7

Q ss_pred             cccCCCCCCCCCCCCCC--chHHHHhhhc
Q psy8405          41 NNQGLKSGDHENIHNVN--TSKIGIKTEE   67 (225)
Q Consensus        41 ~~~~~~~ntWEp~~nL~--c~~lI~~~e~   67 (225)
                      .+++..++||||+++|.  |++||.+|++
T Consensus        26 ~g~~~~~~tWe~~~~l~~~~~~li~~f~~   54 (55)
T PF00385_consen   26 KGYPYSENTWEPEENLKNCFPELIEEFEK   54 (55)
T ss_dssp             TTSSGGGEEEEEGGGCSSHCHHHHHHHHH
T ss_pred             CCCCCCCCeEeeHHHHhHhhHHHHHHHhC
Confidence            46778899999999998  4899999986

These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain, with weak but significant sequence similarity to the N-terminal chromo domain,[], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1). The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigen and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1. Functional dissections of chromo domain proteins suggests a mechanistic role for chromo domains in targeting chromo domain proteins to specific regions of the nucleus. The mechanism of targeting may involve protein-protein and/or protein/nucleic acid interactions. Hence, several line of evidence show that the HP1 chromo domain is a methyl-specific histone binding module, whereas the chromo domain of two protein components of the drosophila dosage compensation complex, MSL3 and MOF, contain chromo domains that bind to RNA in vitro []. The high resolution structures of HP1-family protein chromo and chromo shadow domain reveal a conserved chromo domain fold motif consisting of three beta strands packed against an alpha helix. The chromo domain fold belongs to the OB (oligonucleotide/oligosaccharide binding)-fold class found in a variety of prokaryotic and eukaryotic nucleic acid binding protein [].; PDB: 2H1E_B 3MWY_W 2DY8_A 1KNE_A 1KNA_A 1Q3L_A 2EE1_A 1AP0_A 1GUW_A 1X3P_A ....

>KOG1911|consensus

Probab=96.25  E-value=0.003  Score=56.36  Aligned_cols=57  Identities=21%  Similarity=0.265  Sum_probs=48.7

Q ss_pred             CCcccceeeeeeeCCceEEEEEeCCCCCcceeehhHH-HhhCCHHHHHHHHhhccCCC
Q psy8405         158 NLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEIC-KRKYPQPLIRFFEQHLVFPS  214 (225)
Q Consensus       158 GLepEkIIGatd~~GeL~FLVKWKg~de~DlVpA~ea-neKcPQmVIkFYEerL~w~~  214 (225)
                      .+.+|+|+.-...+|.+-|||+|+|....+--+..+. +..||.+|.+|.+++-.-+.
T Consensus        48 ~~vvEki~~~r~~~g~~eYlvkW~Gy~~~~ntWEPee~~~~C~~li~~~~~~~~~~k~  105 (270)
T KOG1911|consen   48 EYVVEKILKRRKKNGKIEYLVKWKGYPDPDNTWEPEEHNLDCPELIDEFEKSQKKLKK  105 (270)
T ss_pred             hhhhhhhhhccccCCCceeeeecCCCCCccccCCchhhccccHHHHHHHHHHhcccCc
Confidence            3568888888889999999999999998887776666 88999999999999877664

>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus

Probab=94.16  E-value=0.023  Score=37.96  Aligned_cols=27  Identities=7%  Similarity=0.047  Sum_probs=23.3

Q ss_pred             cccCCCCCCCCCCCCCCch-HHHHhhhc
Q psy8405          41 NNQGLKSGDHENIHNVNTS-KIGIKTEE   67 (225)
Q Consensus        41 ~~~~~~~ntWEp~~nL~c~-~lI~~~e~   67 (225)
                      .+++..++||||+++|.+. ++|.+|++
T Consensus        27 ~g~~~~~~tWe~~~~l~~~~~~i~~~~~   54 (55)
T cd00024          27 KGYSYSEDTWEPEENLEDCKELIDEFKK   54 (55)
T ss_pred             CCCCCccCccccHHHhCchHHHHHHHHh
Confidence            4566779999999999985 99999986

Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.

>KOG2748|consensus

Probab=93.06  E-value=0.054  Score=51.71  Aligned_cols=27  Identities=15%  Similarity=0.068  Sum_probs=23.7

Q ss_pred             ccCCCCCCCCCCCCCCchHHHHhhhcC
Q psy8405          42 NQGLKSGDHENIHNVNTSKIGIKTEEN   68 (225)
Q Consensus        42 ~~~~~~ntWEp~~nL~c~~lI~~~e~~   68 (225)
                      -+--|-|||||++|+==+-||++|++.
T Consensus        34 GWs~kyNTWEPEENILDpRLi~AFe~r   60 (369)
T KOG2748|consen   34 GWSQKYNTWEPEENILDPRLIAAFEQR   60 (369)
T ss_pred             ccccccCccCccccccCHHHHHHHHhh
Confidence            455678999999999999999999984

>KOG2748|consensus

Probab=92.40  E-value=0.044  Score=52.29  Aligned_cols=51  Identities=22%  Similarity=0.256  Sum_probs=42.9

Q ss_pred             CCcccceeeeeeeCCceEEEEEeCCCCCcceeehhHHHhhCCHHHHHHHHh
Q psy8405         158 NLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQ  208 (225)
Q Consensus       158 GLepEkIIGatd~~GeL~FLVKWKg~de~DlVpA~eaneKcPQmVIkFYEe  208 (225)
                      =+.+|.||--....|.+-|||||+|-+..---..-+.|+.-|.+++.|.+.
T Consensus        10 VfAaEsIlkkRirKGrvEYlVKWkGWs~kyNTWEPEENILDpRLi~AFe~r   60 (369)
T KOG2748|consen   10 VFAAESILKKRIRKGRVEYLVKWKGWSQKYNTWEPEENILDPRLIAAFEQR   60 (369)
T ss_pred             HHHHHHHHHHHhhccceEEEEEecccccccCccCccccccCHHHHHHHHhh
Confidence            367899998888899999999999987765566667799999999998764

>smart00298 CHROMO Chromatin organization modifier domain

Probab=92.11  E-value=0.04  Score=36.56  Aligned_cols=27  Identities=15%  Similarity=-0.017  Sum_probs=23.2

Q ss_pred             cccCCCCCCCCCCCCCC-chHHHHhhhc
Q psy8405          41 NNQGLKSGDHENIHNVN-TSKIGIKTEE   67 (225)
Q Consensus        41 ~~~~~~~ntWEp~~nL~-c~~lI~~~e~   67 (225)
                      .++.-.++||+|.++|. |+++|.+|..
T Consensus        25 ~g~~~~~~tW~~~~~l~~~~~~v~~~~~   52 (55)
T smart00298       25 KGYSYSEDTWEPEENLLNCSKKLDNYKK   52 (55)
T ss_pred             CCCCCccCceeeHHHHHHHHHHHHHHHH
Confidence            34556679999999999 9999999987

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	225
1s4z_A	75	Hp1 Chromo Shadow Domain In Complex With Pxvxl Moti		6e-08
3q6s_A	78	The Crystal Structure Of The Heterochromatin Protei		6e-08
3p7j_A	87	Drosophila Hp1a Chromo Shadow Domain Length = 87		7e-08
3i3c_A	75	Crystal Structural Of Cbx5 Chromo Shadow Domain Len		7e-08
2fmm_A	74	Crystal Structure Of Emsy-Hp1 Complex Length = 74		3e-07
1dz1_A	70	Mouse Hp1 (M31) C Terminal (Shadow Chromo) Domain L		3e-07
3kup_A	65	Crystal Structure Of The Cbx3 Chromo Shadow Domain		2e-06

>pdb|1S4Z|A Chain A, Hp1 Chromo Shadow Domain In Complex With Pxvxl Motif Of Caf- 1 Length = 75

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 37/61 (60%)
Query: 154 GIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLVFP 213
           G  R L  E IIGAT   G   +L+ W+ SDEADL+PA+    K PQ +I F+E+ L + 
Sbjct: 11  GFARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWH 70
Query: 214 S 214
           S
Sbjct: 71  S 71

>pdb|3Q6S|A Chain A, The Crystal Structure Of The Heterochromatin Protein 1 Beta Chromoshadow Domain Complexed With A Peptide From Shugoshin 1 Length = 78

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 154 GIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLV-- 211
           G  R L  E IIGAT   G   +L+ W+ SDEADL+PA+    K PQ +I F+E+ L   
Sbjct: 5   GFARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWH 64
Query: 212 -FPSE 215
            +PSE
Sbjct: 65  SYPSE 69

>pdb|3P7J|A Chain A, Drosophila Hp1a Chromo Shadow Domain Length = 87

Iteration: 1
 Score = 53.9 bits (128), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 42/67 (62%)
Query: 154 GIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLVFP 213
           G DR L  E+I+GA+   G   +L+ ++G D+A+++P+ +   K P+ +I F+E+ L + 
Sbjct: 21  GFDRGLEAEKILGASDNNGRLTFLIQFKGVDQAEMVPSSVANEKIPRMVIHFYEERLSWY 80
Query: 214 SENNASK 220
           S+N   K
Sbjct: 81  SDNEDKK 87

>pdb|3I3C|A Chain A, Crystal Structural Of Cbx5 Chromo Shadow Domain Length = 75

Iteration: 1
 Score = 53.9 bits (128), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 39/63 (61%)
Query: 149 NDMNLGIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQ 208
           ND+  G +R L  E+IIGAT   G   +L+ W+ +DEADL+ A+    K PQ +I F+E+
Sbjct: 13  NDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEE 72
Query: 209 HLV 211
            L 
Sbjct: 73  RLT 75

>pdb|2FMM|A Chain A, Crystal Structure Of Emsy-Hp1 Complex Length = 74

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 37/61 (60%)
Query: 154 GIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLVFP 213
           G  R L  E IIGAT   G   +L+ W+ SDEADL+PA+    K PQ +I F+E+ L + 
Sbjct: 11  GFARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWH 70
Query: 214 S 214
           S
Sbjct: 71  S 71

>pdb|1DZ1|A Chain A, Mouse Hp1 (M31) C Terminal (Shadow Chromo) Domain Length = 70

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 36/59 (61%)
Query: 154 GIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLVF 212
           G  R L  E IIGAT   G   +L+ W+ SDEADL+PA+    K PQ +I F+E+ L +
Sbjct: 11  GFARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTW 69

>pdb|3KUP|A Chain A, Crystal Structure Of The Cbx3 Chromo Shadow Domain Length = 65

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 35/61 (57%)
Query: 150 DMNLGIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQH 209
           D   G  R L  E IIGAT   G   +L+ W+ SDEADL+ A+    K PQ +I F+E+ 
Sbjct: 4   DKPRGFARGLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEER 63
Query: 210 L 210
           L
Sbjct: 64  L 64

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	225
3i3c_A	75	Chromobox protein homolog 5; CBX5, chromo shadow d	8e-17
3kup_A	65	Chromobox protein homolog 3; chromo shadow domain,	1e-16
3q6s_A	78	Chromobox protein homolog 1; incenp, heterochromat	1e-16
2fmm_A	74	Chromobox protein homolog 1; ENT domain, chromo sh	2e-16
3p7j_A	87	Heterochromatin protein 1; chromo shadow domain, g	4e-16

>3i3c_A Chromobox protein homolog 5; CBX5, chromo shadow domain, structural genomics, structural consortium, SGC, centromere, nucleus, phosphoprotein; 2.48A {Homo sapiens} Length = 75

 Score = 71.4 bits (175), Expect = 8e-17
 Identities = 28/74 (37%), Positives = 42/74 (56%)

Query: 137 SVNDIVVKEKLLNDMNLGIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKR 196
           S     +  +  ND+  G +R L  E+IIGAT   G   +L+ W+ +DEADL+ A+    
Sbjct: 1   SSGRENLYFQGSNDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANV 60

Query: 197 KYPQPLIRFFEQHL 210
           K PQ +I F+E+ L
Sbjct: 61  KCPQIVIAFYEERL 74

>3kup_A Chromobox protein homolog 3; chromo shadow domain, structural genomics consortium, SGC, acetylation, chromatin regulator, nucleus, phosphoprotein; 1.77A {Homo sapiens} PDB: 1dz1_A Length = 65

 Score = 70.9 bits (174), Expect = 1e-16
 Identities = 26/57 (45%), Positives = 34/57 (59%)

Query: 154 GIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHL 210
           G  R L  E IIGAT   G   +L+ W+ SDEADL+ A+    K PQ +I F+E+ L
Sbjct: 8   GFARGLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERL 64

>3q6s_A Chromobox protein homolog 1; incenp, heterochromatin, centromere, cell cycle; 1.93A {Homo sapiens} Length = 78

 Score = 71.0 bits (174), Expect = 1e-16
 Identities = 28/64 (43%), Positives = 38/64 (59%)

Query: 154 GIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLVFP 213
           G  R L  E IIGAT   G   +L+ W+ SDEADL+PA+    K PQ +I F+E+ L + 
Sbjct: 5   GFARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWH 64

Query: 214 SENN 217
           S  +
Sbjct: 65  SYPS 68

>2fmm_A Chromobox protein homolog 1; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: b.34.13.2 PDB: 1s4z_A Length = 74

 Score = 70.2 bits (172), Expect = 2e-16
 Identities = 28/64 (43%), Positives = 38/64 (59%)

Query: 154 GIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLVFP 213
           G  R L  E IIGAT   G   +L+ W+ SDEADL+PA+    K PQ +I F+E+ L + 
Sbjct: 11  GFARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWH 70

Query: 214 SENN 217
           S  +
Sbjct: 71  SYPS 74

>3p7j_A Heterochromatin protein 1; chromo shadow domain, gene silenc epigenetics, transcription; 2.30A {Drosophila melanogaster} Length = 87

 Score = 69.9 bits (171), Expect = 4e-16
 Identities = 23/67 (34%), Positives = 42/67 (62%)

Query: 154 GIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLVFP 213
           G DR L  E+I+GA+   G   +L+ ++G D+A+++P+ +   K P+ +I F+E+ L + 
Sbjct: 21  GFDRGLEAEKILGASDNNGRLTFLIQFKGVDQAEMVPSSVANEKIPRMVIHFYEERLSWY 80

Query: 214 SENNASK 220
           S+N   K
Sbjct: 81  SDNEDKK 87

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	225
3q6s_A	78	Chromobox protein homolog 1; incenp, heterochromat	99.96
2fmm_A	74	Chromobox protein homolog 1; ENT domain, chromo sh	99.95
3p7j_A	87	Heterochromatin protein 1; chromo shadow domain, g	99.95
3kup_A	65	Chromobox protein homolog 3; chromo shadow domain,	99.94
3i3c_A	75	Chromobox protein homolog 5; CBX5, chromo shadow d	99.93
1e0b_A	68	SWI6 protein; chromatin-binding, chromodomain, sha	99.83
2h1e_A	177	Chromo domain protein 1; CHD1, tandem chromodomain	98.8
3fdt_A	59	Chromobox protein homolog 5; chromobox homolog5, C	98.54
3f2u_A	55	Chromobox protein homolog 1; human chromobox homol	98.52
3mts_A	64	Histone-lysine N-methyltransferase SUV39H1; histon	98.48
3g7l_A	61	Chromo domain-containing protein 1; chromodomain,	98.45
3lwe_A	62	M-phase phosphoprotein 8; MPP8, structural genomic	98.41
3i91_A	54	Chromobox protein homolog 8; chromobox homolog 8,	98.37
1ap0_A	73	Modifier protein 1; chromatin-binding, protein int	98.36
3h91_A	54	Chromobox protein homolog 2; human chromobox homol	98.34
1ap0_A	73	Modifier protein 1; chromatin-binding, protein int	98.25
1q3l_A	69	Heterochromatin protein 1; chromodomain, HP1, chro	98.23
1pfb_A	55	Polycomb protein; chromatin, histone methylation,	98.2
3f2u_A	55	Chromobox protein homolog 1; human chromobox homol	98.17
1pdq_A	72	Polycomb protein; methyllysine, chromodomain, poly	98.17
3fdt_A	59	Chromobox protein homolog 5; chromobox homolog5, C	98.13
2rso_A	92	Chromatin-associated protein SWI6; chromodomain, s	98.13
2dnv_A	64	Chromobox protein homolog 8; chromo domain, histon	98.13
2k1b_A	73	Chromobox protein homolog 7; alpha/beta protein, c	98.13
3mts_A	64	Histone-lysine N-methyltransferase SUV39H1; histon	98.12
1g6z_A	70	CLR4 protein; transferase; NMR {Schizosaccharomyce	98.07
1pfb_A	55	Polycomb protein; chromatin, histone methylation,	98.06
3i91_A	54	Chromobox protein homolog 8; chromobox homolog 8,	98.03
1pdq_A	72	Polycomb protein; methyllysine, chromodomain, poly	98.01
1g6z_A	70	CLR4 protein; transferase; NMR {Schizosaccharomyce	98.01
2k1b_A	73	Chromobox protein homolog 7; alpha/beta protein, c	98.0
1q3l_A	69	Heterochromatin protein 1; chromodomain, HP1, chro	98.0
2d9u_A	74	Chromobox protein homolog 2 (isoform 2); chromobox	98.0
2dnt_A	78	Chromodomain protein, Y chromosome-like, isoform B	97.99
2kvm_A	74	Chromobox protein homolog 7; histone modification,	97.97
3h91_A	54	Chromobox protein homolog 2; human chromobox homol	97.96
2dnv_A	64	Chromobox protein homolog 8; chromo domain, histon	97.96
3g7l_A	61	Chromo domain-containing protein 1; chromodomain,	97.92
3lwe_A	62	M-phase phosphoprotein 8; MPP8, structural genomic	97.83
2rsn_A	75	Chromo domain-containing protein 1; chromodomain,	97.83
2rso_A	92	Chromatin-associated protein SWI6; chromodomain, s	97.8
2b2y_A	187	CHD-1, chromodomain-helicase-DNA-binding protein 1	97.8
2kvm_A	74	Chromobox protein homolog 7; histone modification,	97.75
4hae_A	81	CDY-like 2, chromodomain Y-like protein 2; protein	97.74
2dnt_A	78	Chromodomain protein, Y chromosome-like, isoform B	97.73
2rsn_A	75	Chromo domain-containing protein 1; chromodomain,	97.71
2d9u_A	74	Chromobox protein homolog 2 (isoform 2); chromobox	97.52
1x3p_A	54	Cpsrp43; chromo-2 domain, chloroplasts, LHCP, prot	97.52
1x3p_A	54	Cpsrp43; chromo-2 domain, chloroplasts, LHCP, prot	97.48
4hae_A	81	CDY-like 2, chromodomain Y-like protein 2; protein	97.39
3mwy_W	800	Chromo domain-containing protein 1; SWI2/SNF2 ATPa	97.26
2epb_A	68	Chromodomain-helicase-DNA-binding protein 6; struc	96.91
2ee1_A	64	Chromodomain helicase-DNA-binding protein 4; EC 3.	96.83
2epb_A	68	Chromodomain-helicase-DNA-binding protein 6; struc	96.44
2b2y_C	115	CHD-1, chromodomain-helicase-DNA-binding protein 1	95.44
2b2y_A	187	CHD-1, chromodomain-helicase-DNA-binding protein 1	94.3
2b2y_C	115	CHD-1, chromodomain-helicase-DNA-binding protein 1	93.93
2ee1_A	64	Chromodomain helicase-DNA-binding protein 4; EC 3.	93.88
2h1e_A	177	Chromo domain protein 1; CHD1, tandem chromodomain	91.09
3mwy_W	800	Chromo domain-containing protein 1; SWI2/SNF2 ATPa	85.23

>3q6s_A Chromobox protein homolog 1; incenp, heterochromatin, centromere, cell cycle; 1.93A {Homo sapiens} SCOP: b.34.13.2

Probab=99.96  E-value=8.1e-30  Score=191.01  Aligned_cols=72  Identities=39%  Similarity=0.609  Sum_probs=64.9

Q ss_pred             ccCCCCCCCCcccceeeeeeeCCceEEEEEeCCCCCcceeehhHHHhhCCHHHHHHHHhhccCCCCCchhhh
Q psy8405         150 DMNLGIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLVFPSENNASKQ  221 (225)
Q Consensus       150 ~~~~GF~RGLepEkIIGatd~~GeL~FLVKWKg~de~DlVpA~eaneKcPQmVIkFYEerL~w~~~~~~~~q  221 (225)
                      ++++||+|||+||+|||+++.+|+|+|||||||++++|+||+.+||.+||||||+|||+||+|+++++++.+
T Consensus         1 ~k~~Gf~rGle~EkI~g~~~~~Gel~fLvKWKg~~~~dlVpa~ean~k~PqlVI~FYE~~l~~~~~~~~~~~   72 (78)
T 3q6s_A            1 EKPRGFARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHSYPSEDDD   72 (78)
T ss_dssp             -CCCGGGGCCCEEEEEEEECTTSSCEEEEEETTCSCEEEEEHHHHHHHSHHHHHHHHHTTEEEECCC-----
T ss_pred             CCCCccccCCCceEEeeEEcCCCcEEEEEEECCCChhheEeHHHHHhhChHHHHHHHHHhcccccCCchhhh
Confidence            368999999999999999999999999999999999999999999999999999999999999998877644

>2fmm_A Chromobox protein homolog 1; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: b.34.13.2 PDB: 1s4z_A

Probab=99.95  E-value=5.9e-29  Score=184.10  Aligned_cols=70  Identities=40%  Similarity=0.608  Sum_probs=65.9

Q ss_pred             hhccCCCCCCCCcccceeeeeeeCCceEEEEEeCCCCCcceeehhHHHhhCCHHHHHHHHhhccCCCCCc
Q psy8405         148 LNDMNLGIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLVFPSENN  217 (225)
Q Consensus       148 ~~~~~~GF~RGLepEkIIGatd~~GeL~FLVKWKg~de~DlVpA~eaneKcPQmVIkFYEerL~w~~~~~  217 (225)
                      +++.++||+|||+||+|+|+++.+|+|+|||+|||++++|+||+++||.+|||+||+|||+||+|+++++
T Consensus         5 ~~~~~~Gf~rGl~~ekI~g~~~~~Gel~fLvkWkg~d~~dlVpa~~a~~k~Pq~VI~FYE~~l~~~~~~~   74 (74)
T 2fmm_A            5 ESEKPRGFARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHSYPS   74 (74)
T ss_dssp             --CCCCGGGGCCCEEEEEEEEEETTEEEEEEEETTCSCCEEEEHHHHHHHCHHHHHHHHHTTEEESSCCC
T ss_pred             ccccCccccccCCceEEEEEEcCCCcEEEEEEECCCCcccEEEHHHHhhhChHHHHHHHHHhceecCCCC
Confidence            5788999999999999999999999999999999999999999999999999999999999999998753

>3p7j_A Heterochromatin protein 1; chromo shadow domain, gene silenc epigenetics, transcription; 2.30A {Drosophila melanogaster}

Probab=99.95  E-value=3.4e-28  Score=186.18  Aligned_cols=66  Identities=32%  Similarity=0.636  Sum_probs=58.8

Q ss_pred             hccCCCCCCCCcccceeeeeeeCCceEEEEEeCCCCCcceeehhHHHhhCCHHHHHHHHhhccCCC
Q psy8405         149 NDMNLGIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLVFPS  214 (225)
Q Consensus       149 ~~~~~GF~RGLepEkIIGatd~~GeL~FLVKWKg~de~DlVpA~eaneKcPQmVIkFYEerL~w~~  214 (225)
                      ..+++||+|||+||+|+|+++.+|+|+|||||||++++|+||+.+||.+||||||+|||+||+|++
T Consensus        16 ~~k~~GF~RGle~EkIlgat~~~Gel~fLVKWKg~~e~DlVpa~ean~k~PqlVI~FYEerl~w~~   81 (87)
T 3p7j_A           16 VSGSTGFDRGLEAEKILGASDNNGRLTFLIQFKGVDQAEMVPSSVANEKIPRMVIHFYEERLSWYS   81 (87)
T ss_dssp             ----CTTTTTCCEEEEEEEEEETTEEEEEEEETTCSSCEEEEHHHHHHHCHHHHHHHHHHTCC---
T ss_pred             cCCCCCccCCCCceEEeeEEccCCcEEEEEEECCCCccceEeHHHHhhhChHHHHHHHHHhcccCc
Confidence            467899999999999999999999999999999999999999999999999999999999999994

>3kup_A Chromobox protein homolog 3; chromo shadow domain, structural genomics consortium, SGC, acetylation, chromatin regulator, nucleus, phosphoprotein; 1.77A {Homo sapiens} SCOP: b.34.13.2 PDB: 1dz1_A

Probab=99.94  E-value=5.3e-28  Score=175.10  Aligned_cols=63  Identities=43%  Similarity=0.624  Sum_probs=58.5

Q ss_pred             hccCCCCCCCCcccceeeeeeeCCceEEEEEeCCCCCcceeehhHHHhhCCHHHHHHHHhhcc
Q psy8405         149 NDMNLGIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLV  211 (225)
Q Consensus       149 ~~~~~GF~RGLepEkIIGatd~~GeL~FLVKWKg~de~DlVpA~eaneKcPQmVIkFYEerL~  211 (225)
                      +++++||+|||+||+|+|+++.+|+|+|||||||++++|+||+.+||.+||||||+|||+||+
T Consensus         3 ~~~~~Gf~rGle~ekI~g~~~~~Gel~fLvKWKg~~~~d~Vpa~e~n~~~PqlVI~fYE~~l~   65 (65)
T 3kup_A            3 ADKPRGFARGLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLT   65 (65)
T ss_dssp             ---CCGGGGCCCEEEEEEEECTTSSCEEEEEETTCSCCEEEEHHHHHHHCHHHHHHHHHHHC-
T ss_pred             CCCCCCcccCCCeeEEeeEEcCCCcEEEEEEECCCChhheEEHHHHHhhChHHHHHHHHHhcC
Confidence            467899999999999999999999999999999999999999999999999999999999986

>3i3c_A Chromobox protein homolog 5; CBX5, chromo shadow domain, structural genomics, structural consortium, SGC, centromere, nucleus, phosphoprotein; 2.48A {Homo sapiens} SCOP: b.34.13.2

Probab=99.93  E-value=2.6e-27  Score=176.49  Aligned_cols=64  Identities=42%  Similarity=0.666  Sum_probs=55.9

Q ss_pred             hhccCCCCCCCCcccceeeeeeeCCceEEEEEeCCCCCcceeehhHHHhhCCHHHHHHHHhhcc
Q psy8405         148 LNDMNLGIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLV  211 (225)
Q Consensus       148 ~~~~~~GF~RGLepEkIIGatd~~GeL~FLVKWKg~de~DlVpA~eaneKcPQmVIkFYEerL~  211 (225)
                      .+++++||+|||+||+|+|+++.+|+|+|||||||++++|+||+.+||.+||||||+|||+||+
T Consensus        12 ~~~k~~Gf~rGle~EkIlg~t~~~Gel~fLVKWKg~~e~dlVpa~ean~k~PqlVI~FYEerlt   75 (75)
T 3i3c_A           12 SNDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLT   75 (75)
T ss_dssp             -CTTCCGGGGCCCEEEEEEEEC---CCEEEEEETTSSCEEEEEHHHHHHHCHHHHHHHHTC---
T ss_pred             CcCCCCCcccCCCeeEEeeEEccCCcEEEEEEECCCChhceEEHHHHhhhChHHHHHHHHHhcC
Confidence            3578999999999999999999999999999999999999999999999999999999999986

>1e0b_A SWI6 protein; chromatin-binding, chromodomain, shadow, heterochromatin; HET: 1PG; 1.9A {Schizosaccharomyces pombe} SCOP: b.34.13.2

Probab=99.83  E-value=2.7e-21  Score=141.66  Aligned_cols=56  Identities=27%  Similarity=0.476  Sum_probs=48.8

Q ss_pred             Ccccceeeeee-eCCceEEEEEeCCCCCcceeehhHHHhhCCHHHHHHHHhhccCCCC
Q psy8405         159 LPVEEIIGATI-EVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLVFPSE  215 (225)
Q Consensus       159 LepEkIIGatd-~~GeL~FLVKWKg~de~DlVpA~eaneKcPQmVIkFYEerL~w~~~  215 (225)
                      -.+++|+|+++ .+|+|+|||+|||+++.+ ||+++||.+|||+||+|||+||+|+++
T Consensus        11 ~~Ve~I~g~~~~~~g~L~flikwk~~~~~~-Vpa~~a~~kcPq~vI~FYE~~l~~~~~   67 (68)
T 1e0b_A           11 DLVSSIDTIERKDDGTLEIYLTWKNGAISH-HPSTITNKKCPQKMLQFYESHLTFREN   67 (68)
T ss_dssp             TTEEEEEEEEECTTSCEEEEEEETTSCEEE-EEHHHHHHHSHHHHHHHHHTCC-----
T ss_pred             hheeEEEEEEECCCCEEEEEEEECCCCccc-eEHHHhHhhCCHHHHHHHHHheeeccC
Confidence            46899999998 999999999999998877 999999999999999999999999874

>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A

Probab=98.80  E-value=2.1e-10  Score=96.22  Aligned_cols=113  Identities=16%  Similarity=0.156  Sum_probs=79.1

Q ss_pred             cccCCCCCCCCCCCCCC-chHH--HHhhhcCCCcCCCCcccccccCCCCcCccccccCCCCCCCCCcceeeeecccccCC
Q psy8405          41 NNQGLKSGDHENIHNVN-TSKI--GIKTEENPTLDGGNIKIPKKRGRKRKYPLANLIQPTSNHTPDGTVVKKKRGRKRKY  117 (225)
Q Consensus        41 ~~~~~~~ntWEp~~nL~-c~~l--I~~~e~~~~~~~~~~k~~~kr~~k~~~~~~~~~q~~~~~~~~~~~~~k~~~~k~~~  117 (225)
                      ++|.--.|||||+++|. |+.|  |..|..+....       ....+       .                         
T Consensus        54 Kg~Sy~HnTWe~ee~L~~~~glkKl~nf~kk~~~~-------e~~~~-------~-------------------------   94 (177)
T 2h1e_A           54 TDESHLHNTWETYESIGQVRGLKRLDNYCKQFIIE-------DQQVR-------L-------------------------   94 (177)
T ss_dssp             TTSCGGGCEEECHHHHCSCTTHHHHHHHHHHHTHH-------HHHHH-------H-------------------------
T ss_pred             CCCccccCeecCHHHHhhchHHHHHHHHHHHhhhh-------hhhhh-------c-------------------------
Confidence            56777899999999999 9999  88887721100       00000       0                         


Q ss_pred             CCCCCChhhhhhhcccCCCCcchhHHHHHhhhccCCCCCCCCcccceeeeee-----eCCceEEEEEeCCC--CCcceee
Q psy8405         118 PLPTVEPEEVAYKGSQHNNSVNDIVVKEKLLNDMNLGIDRNLPVEEIIGATI-----EVGFPAYLVTWEGS--DEADLLP  190 (225)
Q Consensus       118 p~~~s~~~~~~~~~~~~~nses~~~kKk~e~~~~~~GF~RGLepEkIIGatd-----~~GeL~FLVKWKg~--de~DlVp  190 (225)
                       .+..+++.+.++..+          .    .....+|...++||+||+...     .+|.+.|||||+|.  +++.+.|
T Consensus        95 -~~~~~~ed~E~~~~~----------~----e~~~~~~~e~~~VErIi~~r~~~~~~~~~~~~YLVKWkgl~y~e~TWE~  159 (177)
T 2h1e_A           95 -DPYVTAEDIEIMDME----------R----ERRLDEFEEFHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWEN  159 (177)
T ss_dssp             -CTTCCHHHHHHHHHH----------H----HHHHHHHHHTTSEEEEEEEEEEECTTSCEEEEEEEEETTSCSTTCEEEE
T ss_pred             -ccCCChHHHHHhhhh----------h----hhhhhcccccceeEEEEEEeeecccCCCCcEEEEEEeCCCCcccccccC
Confidence             012234444444321          0    011236778899999999984     68999999999997  6888999


Q ss_pred             hhHHHhhCCHHHHHHHH
Q psy8405         191 AEICKRKYPQPLIRFFE  207 (225)
Q Consensus       191 A~eaneKcPQmVIkFYE  207 (225)
                      +..+...||++|-+|++
T Consensus       160 ~~~~~~~~~~~I~~y~~  176 (177)
T 2h1e_A          160 ATDIVKLAPEQVKHFQK  176 (177)
T ss_dssp             HHHHHHHCHHHHHHHTC
T ss_pred             hHHhhhhHHHHHHHHHh
Confidence            99999899999888865

>3fdt_A Chromobox protein homolog 5; chromobox homolog5, CBX5, structural GENO structural genomics consortium, SGC, centromere, nucleus, phosphoprotein; HET: M3L; 2.00A {Homo sapiens}

Probab=98.54  E-value=4.1e-08  Score=68.82  Aligned_cols=50  Identities=22%  Similarity=0.444  Sum_probs=41.1

Q ss_pred             CcccceeeeeeeCCceEEEEEeCCCCC--cceeehhHHHhhCCHHHHHHHHhhc
Q psy8405         159 LPVEEIIGATIEVGFPAYLVTWEGSDE--ADLLPAEICKRKYPQPLIRFFEQHL  210 (225)
Q Consensus       159 LepEkIIGatd~~GeL~FLVKWKg~de--~DlVpA~eaneKcPQmVIkFYEerL  210 (225)
                      +++|+||+....+|.+.|||||+|.+.  ..+.|...+  .||.+|.+|+.++-
T Consensus         4 y~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl--~~~~li~~f~~~~k   55 (59)
T 3fdt_A            4 YVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNL--DCPELISEFMKKYK   55 (59)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGE--ECHHHHHHHHC---
T ss_pred             EEEEEEEEEEEeCCeEEEEEEEeCCCcccCCccchhHC--CCHHHHHHHHHhhh
Confidence            679999999988999999999999875  457777766  69999999998763

>3f2u_A Chromobox protein homolog 1; human chromobox homolog 1, CBX1, structural genomics, struct genomics consortium, SGC, centromere, nucleus; 1.80A {Homo sapiens} PDB: 3tzd_A* 2l11_A* 3dm1_A*

Probab=98.52  E-value=8.5e-08  Score=66.26  Aligned_cols=49  Identities=22%  Similarity=0.494  Sum_probs=41.8

Q ss_pred             CcccceeeeeeeCCceEEEEEeCCCCC--cceeehhHHHhhCCHHHHHHHHhh
Q psy8405         159 LPVEEIIGATIEVGFPAYLVTWEGSDE--ADLLPAEICKRKYPQPLIRFFEQH  209 (225)
Q Consensus       159 LepEkIIGatd~~GeL~FLVKWKg~de--~DlVpA~eaneKcPQmVIkFYEer  209 (225)
                      +++|+||+....+|.+.|||||+|.+.  ..+.|...+  .||.+|.+|++++
T Consensus         3 y~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl--~~~~li~~f~~~q   53 (55)
T 3f2u_A            3 YVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENL--DCPDLIAEFLQSQ   53 (55)
T ss_dssp             CCEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGC--CCHHHHHHHHC--
T ss_pred             EEEEEEEEEEEeCCeEEEEEEEEeCCCccCCeeEHHHC--CCHHHHHHHHHHc
Confidence            689999999988999999999999874  568888877  6999999999865

>3mts_A Histone-lysine N-methyltransferase SUV39H1; histone methyltransferase, histone-lysine N-methyltransferas SUV39H1, histone H3, TRI-methylation; 2.20A {Homo sapiens}

Probab=98.48  E-value=1.2e-07  Score=67.89  Aligned_cols=48  Identities=23%  Similarity=0.276  Sum_probs=41.1

Q ss_pred             cccceeeeeeeCCceEEEEEeCCCCCc--ceeehhHHHhhCCHHHHHHHHhh
Q psy8405         160 PVEEIIGATIEVGFPAYLVTWEGSDEA--DLLPAEICKRKYPQPLIRFFEQH  209 (225)
Q Consensus       160 epEkIIGatd~~GeL~FLVKWKg~de~--DlVpA~eaneKcPQmVIkFYEer  209 (225)
                      +||+||+....+|.+.|||||+|.+..  .+.|...++  ||.+|.+|+...
T Consensus         2 EVE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~nl~--c~~li~~f~~~~   51 (64)
T 3mts_A            2 EVEYLCDYKKIREQEYYLVKWRGYPDSESTWEPRQNLK--CVRILKQFHKDL   51 (64)
T ss_dssp             CEEEEEEEEECSSCEEEEEEETTSCGGGCEEEEGGGCC--CHHHHHHHHHHH
T ss_pred             CceEEEEEEEeCCeEEEEEEEecCCCcCCcEeEHHHCC--CHHHHHHHHHHH
Confidence            689999999889999999999998754  578887774  999999998754

>3g7l_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, silencing, cell cycle, chromosome partition, DNA-binding, nucleus; HET: M3L; 2.20A {Schizosaccharomyces pombe}

Probab=98.45  E-value=1.6e-07  Score=66.35  Aligned_cols=50  Identities=16%  Similarity=0.303  Sum_probs=42.4

Q ss_pred             CCcccceeeeeeeCCce-EEEEEeCCCCC--cceeehhHHHhhCCHHHHHHHHhh
Q psy8405         158 NLPVEEIIGATIEVGFP-AYLVTWEGSDE--ADLLPAEICKRKYPQPLIRFFEQH  209 (225)
Q Consensus       158 GLepEkIIGatd~~GeL-~FLVKWKg~de--~DlVpA~eaneKcPQmVIkFYEer  209 (225)
                      -+++|+|++....+|.+ .|||||+|.+.  ..+.|...+  .||.+|++||+++
T Consensus         7 ey~VE~Il~~r~~~g~~~~YlVkWkGy~~~~~TWEp~~nl--~~~~li~~~~~~r   59 (61)
T 3g7l_A            7 VYEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNL--FGAEKVLKKWKKR   59 (61)
T ss_dssp             EEEEEEEEEEEECTTSCEEEEEEETTSCGGGCEEEEGGGG--TBCHHHHHHHHHC
T ss_pred             EEEEEEEEEEEEECCCEEEEEEEEeCCCCcCCceeeHhHC--CCHHHHHHHHHHh
Confidence            36899999998888887 99999999875  457787766  5999999999976

>3lwe_A M-phase phosphoprotein 8; MPP8, structural genomics, structural genomics consortium, S repeat, nucleus, cell cycle; 2.05A {Homo sapiens} SCOP: b.34.13.0 PDB: 3r93_A* 3svm_A* 3qo2_A*

Probab=98.41  E-value=3.9e-07  Score=64.39  Aligned_cols=51  Identities=24%  Similarity=0.355  Sum_probs=43.8

Q ss_pred             CCcccceeeeeeeCCceEEEEEeCCCC--CcceeehhHHHhhCCHHHHHHHHhh
Q psy8405         158 NLPVEEIIGATIEVGFPAYLVTWEGSD--EADLLPAEICKRKYPQPLIRFFEQH  209 (225)
Q Consensus       158 GLepEkIIGatd~~GeL~FLVKWKg~d--e~DlVpA~eaneKcPQmVIkFYEer  209 (225)
                      -+++|+||+....+|.+.|||+|+|.+  ...+.|...+ ..||.+|-+|+.++
T Consensus         4 ~y~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl-~~~~~li~~f~~~~   56 (62)
T 3lwe_A            4 VFEVEKILDMKTEGGKVLYKVRWKGYTSDDDTWEPEIHL-EDCKEVLLEFRKKI   56 (62)
T ss_dssp             SCCEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEHHHH-TTCHHHHHHHHHHH
T ss_pred             eEEEEEEEEEEEcCCeEEEEEEEeCCCCcCCCeeeHhHh-hccHHHHHHHHHhh
Confidence            378999999998899999999999987  4568888877 36999999998765

>3i91_A Chromobox protein homolog 8; chromobox homolog 8, CBX8, structural genomics structural genomics consortium, SGC, chromatin regulator, N phosphoprotein, repressor; HET: M3L; 1.55A {Homo sapiens} SCOP: b.34.13.2 PDB: 3gv6_A* 3i90_A*

Probab=98.37  E-value=2.6e-07  Score=63.47  Aligned_cols=47  Identities=28%  Similarity=0.415  Sum_probs=39.7

Q ss_pred             CcccceeeeeeeCCceEEEEEeCCCCC--cceeehhHHHhhCCHHHHHHHH
Q psy8405         159 LPVEEIIGATIEVGFPAYLVTWEGSDE--ADLLPAEICKRKYPQPLIRFFE  207 (225)
Q Consensus       159 LepEkIIGatd~~GeL~FLVKWKg~de--~DlVpA~eaneKcPQmVIkFYE  207 (225)
                      +++|+|++....+|.+.|||||+|.+.  ..+.|...+  .||.+|.+|.+
T Consensus         4 y~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl--~~~~li~~f~~   52 (54)
T 3i91_A            4 FAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENI--LDARLLAAFEE   52 (54)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGB--CCHHHHHHHHH
T ss_pred             EEEEEEEEEEEeCCcEEEEEEEeCCCcccCcccchhHC--CCHHHHHHHHh
Confidence            579999999988999999999999876  457777754  59999888875

>1ap0_A Modifier protein 1; chromatin-binding, protein interaction motif, alpha+beta; NMR {Mus musculus} SCOP: b.34.13.2 PDB: 1guw_A*

Probab=98.36  E-value=3.3e-07  Score=66.77  Aligned_cols=55  Identities=20%  Similarity=0.414  Sum_probs=47.5

Q ss_pred             CCcccceeeeeeeCCceEEEEEeCCCC--CcceeehhHHHhhCCHHHHHHHHhhccCCC
Q psy8405         158 NLPVEEIIGATIEVGFPAYLVTWEGSD--EADLLPAEICKRKYPQPLIRFFEQHLVFPS  214 (225)
Q Consensus       158 GLepEkIIGatd~~GeL~FLVKWKg~d--e~DlVpA~eaneKcPQmVIkFYEerL~w~~  214 (225)
                      -++||+||+....+|.+.|||||+|.+  ...+.|...+  .||.+|.+|+.++-.++.
T Consensus        13 ey~VE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~nL--~~~~li~~f~~~~~~~~~   69 (73)
T 1ap0_A           13 EYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENL--DCPDLIAEFLQSQKTAHE   69 (73)
T ss_dssp             CCEEEEEEEEEECSSSEEEEEEEESSSSCCCEEEETTTC--CCHHHHHHHTTTTTSSTT
T ss_pred             eEEEEEEEEEEEeCCeEEEEEEECCCCCccCcEeeHHHC--CCHHHHHHHHHHhhcccc
Confidence            478999999998999999999999987  4678998877  599999999998776654

>3h91_A Chromobox protein homolog 2; human chromobox homolog 2, CBX2, structural genomics, structural genomics consortium, SGC, chromatin regulator, D binding, nucleus; HET: M3L; 1.50A {Homo sapiens} SCOP: b.34.13.2 PDB: 2k28_A 3i8z_A

Probab=98.34  E-value=3.1e-07  Score=63.22  Aligned_cols=47  Identities=28%  Similarity=0.468  Sum_probs=39.1

Q ss_pred             CcccceeeeeeeCCceEEEEEeCCCCCc--ceeehhHHHhhCCHHHHHHHH
Q psy8405         159 LPVEEIIGATIEVGFPAYLVTWEGSDEA--DLLPAEICKRKYPQPLIRFFE  207 (225)
Q Consensus       159 LepEkIIGatd~~GeL~FLVKWKg~de~--DlVpA~eaneKcPQmVIkFYE  207 (225)
                      +++|+|++....+|.+.|||||+|.+..  .+.|..  |..||.+|.+|+.
T Consensus         4 y~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~--nl~~~~li~~f~~   52 (54)
T 3h91_A            4 FAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEE--NILDPRLLLAFQK   52 (54)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGG--GBCSHHHHHHHHC
T ss_pred             eEEEEEEEEEEeCCcEEEEEEEeCCCCcCCCeecHh--HCCCHHHHHHHHh
Confidence            6799999999899999999999998754  567766  4558999888864

>1ap0_A Modifier protein 1; chromatin-binding, protein interaction motif, alpha+beta; NMR {Mus musculus} SCOP: b.34.13.2 PDB: 1guw_A*

Probab=98.25  E-value=4.1e-07  Score=66.27  Aligned_cols=30  Identities=7%  Similarity=0.015  Sum_probs=27.0

Q ss_pred             cccCCCCCCCCCCCCCCchHHHHhhhcCCC
Q psy8405          41 NNQGLKSGDHENIHNVNTSKIGIKTEENPT   70 (225)
Q Consensus        41 ~~~~~~~ntWEp~~nL~c~~lI~~~e~~~~   70 (225)
                      ++|+..+|||||++||+|++||.+|+....
T Consensus        36 kGy~~~~~TWEp~~nL~~~~li~~f~~~~~   65 (73)
T 1ap0_A           36 KGFSDEDNTWEPEENLDCPDLIAEFLQSQK   65 (73)
T ss_dssp             ESSSSCCCEEEETTTCCCHHHHHHHTTTTT
T ss_pred             CCCCCccCcEeeHHHCCCHHHHHHHHHHhh
Confidence            578888999999999999999999999554

>1q3l_A Heterochromatin protein 1; chromodomain, HP1, chromatin, methyllysine, monomethyllysine, structural protein; HET: MLZ; 1.64A {Drosophila melanogaster} SCOP: b.34.13.2 PDB: 1kne_A* 1kna_A*

Probab=98.23  E-value=7.9e-07  Score=64.79  Aligned_cols=50  Identities=20%  Similarity=0.407  Sum_probs=42.9

Q ss_pred             CCcccceeeeeeeCCceEEEEEeCCCC--CcceeehhHHHhhCCHHHHHHHHhh
Q psy8405         158 NLPVEEIIGATIEVGFPAYLVTWEGSD--EADLLPAEICKRKYPQPLIRFFEQH  209 (225)
Q Consensus       158 GLepEkIIGatd~~GeL~FLVKWKg~d--e~DlVpA~eaneKcPQmVIkFYEer  209 (225)
                      -++||+||+....+|.+.|||||+|.+  ...+.|...+  .||++|-+|..++
T Consensus        16 ey~VEkIld~R~~~g~~eYlVKWkGy~~~~~TWEp~enL--~c~~lI~~F~~~~   67 (69)
T 1q3l_A           16 EYAVEKIIDRRVRKGMVEYYLKWKGYPETENTWEPENNL--DCQDLIQQYEASR   67 (69)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGE--ECHHHHHHHHHHC
T ss_pred             cEEEEEEEEEEEECCeEEEEEEEcCCCcccCCccchHHC--CCHHHHHHHHHHc
Confidence            368999999998999999999999986  4568898877  5999999888764

>1pfb_A Polycomb protein; chromatin, histone methylation, polycomb, chromodomain, peptide binding protein; HET: M3L; 1.40A {Drosophila melanogaster} SCOP: b.34.13.2

Probab=98.20  E-value=1.2e-06  Score=60.37  Aligned_cols=48  Identities=19%  Similarity=0.291  Sum_probs=40.3

Q ss_pred             CcccceeeeeeeCCceEEEEEeCCCCC--cceeehhHHHhhCCHHHHHHHHh
Q psy8405         159 LPVEEIIGATIEVGFPAYLVTWEGSDE--ADLLPAEICKRKYPQPLIRFFEQ  208 (225)
Q Consensus       159 LepEkIIGatd~~GeL~FLVKWKg~de--~DlVpA~eaneKcPQmVIkFYEe  208 (225)
                      +++|+||+....+|.+.|||||+|.+.  ..+.|+..+  .||.+|-+|.++
T Consensus         4 y~VE~Il~~r~~~g~~~YlVKWkgy~~~~~TWEp~~~l--~~~~li~~f~~~   53 (55)
T 1pfb_A            4 YAAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNI--LDRRLIDIYEQT   53 (55)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGC--CSTHHHHHHHTS
T ss_pred             EEEEEEEEEEEeCCeEEEEEEEcCCCCccCcEeEHHHC--CCHHHHHHHHHh
Confidence            579999999989999999999999764  568888765  489998887664

>3f2u_A Chromobox protein homolog 1; human chromobox homolog 1, CBX1, structural genomics, struct genomics consortium, SGC, centromere, nucleus; 1.80A {Homo sapiens} PDB: 3tzd_A* 2l11_A* 3dm1_A*

Probab=98.17  E-value=2.7e-07  Score=63.74  Aligned_cols=28  Identities=7%  Similarity=0.017  Sum_probs=25.1

Q ss_pred             cccCCCCCCCCCCCCCCchHHHHhhhcC
Q psy8405          41 NNQGLKSGDHENIHNVNTSKIGIKTEEN   68 (225)
Q Consensus        41 ~~~~~~~ntWEp~~nL~c~~lI~~~e~~   68 (225)
                      ++|+..+|||||++||+|++||.+|++.
T Consensus        25 kGy~~~~~TWEp~~nl~~~~li~~f~~~   52 (55)
T 3f2u_A           25 KGFSDEDNTWEPEENLDCPDLIAEFLQS   52 (55)
T ss_dssp             TTSCGGGCEEEEGGGCCCHHHHHHHHC-
T ss_pred             EeCCCccCCeeEHHHCCCHHHHHHHHHH
Confidence            5677789999999999999999999983

>1pdq_A Polycomb protein; methyllysine, chromodomain, polycomb, lysine methylation, trimethyllysine, cation-PI, chromo, structural protein; HET: M3L; 1.76A {Drosophila melanogaster} SCOP: b.34.13.2

Probab=98.17  E-value=1.3e-06  Score=64.27  Aligned_cols=49  Identities=18%  Similarity=0.270  Sum_probs=40.3

Q ss_pred             CCcccceeeeeeeCCceEEEEEeCCCCC--cceeehhHHHhhCCHHHHHHHHh
Q psy8405         158 NLPVEEIIGATIEVGFPAYLVTWEGSDE--ADLLPAEICKRKYPQPLIRFFEQ  208 (225)
Q Consensus       158 GLepEkIIGatd~~GeL~FLVKWKg~de--~DlVpA~eaneKcPQmVIkFYEe  208 (225)
                      -++||+||+....+|.+.|||||+|.+.  ..+.|++.+  .||.+|-+|.++
T Consensus        20 eyeVEkIld~r~~~g~~~YlVKWkGy~~~~nTWEP~enL--~~~~lI~~F~~~   70 (72)
T 1pdq_A           20 VYAAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNI--LDRRLIDIYEQT   70 (72)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGC--CSTHHHHHHC--
T ss_pred             eEEEEEEEEEEEeCCcEEEEEEECCCCCccCeecchHHC--CCHHHHHHHHHh
Confidence            4789999999989999999999999764  468888765  499998888765

>3fdt_A Chromobox protein homolog 5; chromobox homolog5, CBX5, structural GENO structural genomics consortium, SGC, centromere, nucleus, phosphoprotein; HET: M3L; 2.00A {Homo sapiens}

Probab=98.13  E-value=2.3e-07  Score=65.02  Aligned_cols=30  Identities=7%  Similarity=-0.011  Sum_probs=25.2

Q ss_pred             cccCCCCCCCCCCCCCCchHHHHhhhcCCC
Q psy8405          41 NNQGLKSGDHENIHNVNTSKIGIKTEENPT   70 (225)
Q Consensus        41 ~~~~~~~ntWEp~~nL~c~~lI~~~e~~~~   70 (225)
                      ++|+..++||||++||+|++||.+|++..+
T Consensus        26 kGy~~~~~TWEp~~nl~~~~li~~f~~~~k   55 (59)
T 3fdt_A           26 KGFSEEHNTWEPEKNLDCPELISEFMKKYK   55 (59)
T ss_dssp             TTSCGGGCEEEEGGGEECHHHHHHHHC---
T ss_pred             eCCCcccCCccchhHCCCHHHHHHHHHhhh
Confidence            567778999999999999999999999544

>2rso_A Chromatin-associated protein SWI6; chromodomain, silencing, chromosomal protein, Met transcription; NMR {Schizosaccharomyces pombe}

Probab=98.13  E-value=6.2e-06  Score=62.72  Aligned_cols=52  Identities=23%  Similarity=0.472  Sum_probs=42.2

Q ss_pred             CCCcccceeeeee--eCCceEEEEEeCCCCCc---ceeehhHHHhhCCHHHHHHHHhh
Q psy8405         157 RNLPVEEIIGATI--EVGFPAYLVTWEGSDEA---DLLPAEICKRKYPQPLIRFFEQH  209 (225)
Q Consensus       157 RGLepEkIIGatd--~~GeL~FLVKWKg~de~---DlVpA~eaneKcPQmVIkFYEer  209 (225)
                      --++||+||+..-  .+|.+.|||||+|.+.+   .+.|+..+ ..||.+|-+|+.++
T Consensus        29 eey~VE~Il~~r~~~~~g~~~YlVkWkGy~~~~~~TWEP~~nl-~~c~~li~~f~~~~   85 (92)
T 2rso_A           29 DEYVVEKVLKHRMARKGGGYEYLLKWEGYDDPSDNTWSSEADC-SGCKQLIEAYWNEH   85 (92)
T ss_dssp             CCCCEEEEEEEEECTTSSCEEEEEEETTCCCCTTSEEECGGGG-GTSHHHHHHHHHHH
T ss_pred             ceEEEEEEEEEEeecCCCEEEEEEEEccCCCcccCccccHHHH-hhHHHHHHHHHHHc
Confidence            3589999999753  57999999999998643   48898876 35999999988765

>2dnv_A Chromobox protein homolog 8; chromo domain, histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.34.13.2

Probab=98.13  E-value=1.3e-06  Score=62.07  Aligned_cols=49  Identities=24%  Similarity=0.315  Sum_probs=39.8

Q ss_pred             CCcccceeeeeeeCCceEEEEEeCCCC--CcceeehhHHHhhCCHHHHHHHHh
Q psy8405         158 NLPVEEIIGATIEVGFPAYLVTWEGSD--EADLLPAEICKRKYPQPLIRFFEQ  208 (225)
Q Consensus       158 GLepEkIIGatd~~GeL~FLVKWKg~d--e~DlVpA~eaneKcPQmVIkFYEe  208 (225)
                      -++||+||+....+|.+.|||||+|.+  ...+.|+..  ..||.+|.+|...
T Consensus        10 ey~VE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~~--l~~~~li~~f~~~   60 (64)
T 2dnv_A           10 VFAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEEN--ILDARLLAAFESG   60 (64)
T ss_dssp             CCCCCCEEEEEESSSSEEEEECCSSCCCSSCCEEETTT--CCCHHHHHHHHCC
T ss_pred             eEEEEEEEEEEEeCCcEEEEEEECCCCcccCCccCHhH--CCCHHHHHHHHHH
Confidence            468999999988899999999999986  456888775  4578887777653

>2k1b_A Chromobox protein homolog 7; alpha/beta protein, chromatin regulator, nucleus, repressor, transcription, transcription regulation; NMR {Homo sapiens} PDB: 2l12_A* 2l1b_A*

Probab=98.13  E-value=1.4e-06  Score=64.16  Aligned_cols=49  Identities=27%  Similarity=0.414  Sum_probs=40.9

Q ss_pred             CCcccceeeeeeeCCceEEEEEeCCCCC--cceeehhHHHhhCCHHHHHHHHh
Q psy8405         158 NLPVEEIIGATIEVGFPAYLVTWEGSDE--ADLLPAEICKRKYPQPLIRFFEQ  208 (225)
Q Consensus       158 GLepEkIIGatd~~GeL~FLVKWKg~de--~DlVpA~eaneKcPQmVIkFYEe  208 (225)
                      -++||+||+....+|.+.|||||+|.+.  ..+.|+..+  .||.+|-+|.++
T Consensus        21 eyeVEkIld~r~~~g~~~YlVKWkGy~~~~~TWEp~enL--~~~~li~~F~~~   71 (73)
T 2k1b_A           21 VFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHI--LDPRLVMAYEEK   71 (73)
T ss_dssp             CCCCSEEEEEEEETTEEEEEEECTTCCGGGCCEEETTSC--SCHHHHHHHHTS
T ss_pred             eEEEEEEEEEEEcCCcEEEEEEECCCCcccCeecchHHC--CCHHHHHHHHHh
Confidence            3689999999989999999999999874  458888755  489998888764

>3mts_A Histone-lysine N-methyltransferase SUV39H1; histone methyltransferase, histone-lysine N-methyltransferas SUV39H1, histone H3, TRI-methylation; 2.20A {Homo sapiens}

Probab=98.12  E-value=1.5e-07  Score=67.39  Aligned_cols=30  Identities=10%  Similarity=0.009  Sum_probs=26.9

Q ss_pred             cccCCCCCCCCCCCCCCchHHHHhhhcCCC
Q psy8405          41 NNQGLKSGDHENIHNVNTSKIGIKTEENPT   70 (225)
Q Consensus        41 ~~~~~~~ntWEp~~nL~c~~lI~~~e~~~~   70 (225)
                      ++|+..+|||||++||+|++||.+|+..+.
T Consensus        23 kGy~~~~~TWEp~~nl~c~~li~~f~~~~~   52 (64)
T 3mts_A           23 RGYPDSESTWEPRQNLKCVRILKQFHKDLE   52 (64)
T ss_dssp             TTSCGGGCEEEEGGGCCCHHHHHHHHHHHH
T ss_pred             ecCCCcCCcEeEHHHCCCHHHHHHHHHHHH
Confidence            578888999999999999999999999554

>1g6z_A CLR4 protein; transferase; NMR {Schizosaccharomyces pombe} SCOP: b.34.13.2

Probab=98.07  E-value=5.3e-07  Score=65.00  Aligned_cols=30  Identities=17%  Similarity=0.070  Sum_probs=26.6

Q ss_pred             cccCCCCCCCCCCCCC-CchHHHHhhhcCCC
Q psy8405          41 NNQGLKSGDHENIHNV-NTSKIGIKTEENPT   70 (225)
Q Consensus        41 ~~~~~~~ntWEp~~nL-~c~~lI~~~e~~~~   70 (225)
                      ++|+..+|||||++|| +|++||.+|+....
T Consensus        33 kGy~~~~~TWEp~enL~~~~~li~~f~~~~~   63 (70)
T 1g6z_A           33 LNYSSRSDTWEPPENLSGCSAVLAEWKRRKR   63 (70)
T ss_dssp             TTTTSSCCEEECGGGGSSCHHHHHHHHHHHT
T ss_pred             CCCCCCCCceecHHHHhhhHHHHHHHHHhcc
Confidence            5788889999999999 99999999998433

>1pfb_A Polycomb protein; chromatin, histone methylation, polycomb, chromodomain, peptide binding protein; HET: M3L; 1.40A {Drosophila melanogaster} SCOP: b.34.13.2

Probab=98.06  E-value=6.9e-07  Score=61.57  Aligned_cols=28  Identities=11%  Similarity=-0.016  Sum_probs=25.5

Q ss_pred             cccCCCCCCCCCCCCCCchHHHHhhhcC
Q psy8405          41 NNQGLKSGDHENIHNVNTSKIGIKTEEN   68 (225)
Q Consensus        41 ~~~~~~~ntWEp~~nL~c~~lI~~~e~~   68 (225)
                      ++|+..+|||||++||.|++||.+|++.
T Consensus        26 kgy~~~~~TWEp~~~l~~~~li~~f~~~   53 (55)
T 1pfb_A           26 KGWNQRYNTWEPEVNILDRRLIDIYEQT   53 (55)
T ss_dssp             TTSCGGGCEEEEGGGCCSTHHHHHHHTS
T ss_pred             cCCCCccCcEeEHHHCCCHHHHHHHHHh
Confidence            5678889999999999999999999983

>3i91_A Chromobox protein homolog 8; chromobox homolog 8, CBX8, structural genomics structural genomics consortium, SGC, chromatin regulator, N phosphoprotein, repressor; HET: M3L; 1.55A {Homo sapiens} SCOP: b.34.13.2 PDB: 3gv6_A* 3i90_A*

Probab=98.03  E-value=6.1e-07  Score=61.61  Aligned_cols=27  Identities=19%  Similarity=0.107  Sum_probs=25.3

Q ss_pred             cccCCCCCCCCCCCCCCchHHHHhhhc
Q psy8405          41 NNQGLKSGDHENIHNVNTSKIGIKTEE   67 (225)
Q Consensus        41 ~~~~~~~ntWEp~~nL~c~~lI~~~e~   67 (225)
                      ++|+..+|||||++||.|++||.+|++
T Consensus        26 kGy~~~~~TWEp~~nl~~~~li~~f~~   52 (54)
T 3i91_A           26 KGWSQKYSTWEPEENILDARLLAAFEE   52 (54)
T ss_dssp             TTSCGGGCEEEEGGGBCCHHHHHHHHH
T ss_pred             eCCCcccCcccchhHCCCHHHHHHHHh
Confidence            678888999999999999999999987

>1pdq_A Polycomb protein; methyllysine, chromodomain, polycomb, lysine methylation, trimethyllysine, cation-PI, chromo, structural protein; HET: M3L; 1.76A {Drosophila melanogaster} SCOP: b.34.13.2

Probab=98.01  E-value=7.8e-07  Score=65.37  Aligned_cols=28  Identities=11%  Similarity=-0.016  Sum_probs=24.6

Q ss_pred             cccCCCCCCCCCCCCCCchHHHHhhhcC
Q psy8405          41 NNQGLKSGDHENIHNVNTSKIGIKTEEN   68 (225)
Q Consensus        41 ~~~~~~~ntWEp~~nL~c~~lI~~~e~~   68 (225)
                      ++|+..+|||||++||+|++||.+|++.
T Consensus        43 kGy~~~~nTWEP~enL~~~~lI~~F~~~   70 (72)
T 1pdq_A           43 KGWNQRYNTWEPEVNILDRRLIDIYEQT   70 (72)
T ss_dssp             TTSCGGGCEEEEGGGCCSTHHHHHHC--
T ss_pred             CCCCCccCeecchHHCCCHHHHHHHHHh
Confidence            5788899999999999999999999983

>1g6z_A CLR4 protein; transferase; NMR {Schizosaccharomyces pombe} SCOP: b.34.13.2

Probab=98.01  E-value=3.5e-06  Score=60.64  Aligned_cols=51  Identities=18%  Similarity=0.305  Sum_probs=42.3

Q ss_pred             CCcccceeeeeeeC-CceE-EEEEeCCCC--CcceeehhHHHhhCCHHHHHHHHhh
Q psy8405         158 NLPVEEIIGATIEV-GFPA-YLVTWEGSD--EADLLPAEICKRKYPQPLIRFFEQH  209 (225)
Q Consensus       158 GLepEkIIGatd~~-GeL~-FLVKWKg~d--e~DlVpA~eaneKcPQmVIkFYEer  209 (225)
                      -++||+||+..... |.+. |||||+|.+  ...+.|+..+. .||.+|-+|....
T Consensus         8 ey~VE~Il~~r~~~~g~~~~YlVKWkGy~~~~~TWEp~enL~-~~~~li~~f~~~~   62 (70)
T 1g6z_A            8 EYEVERIVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPENLS-GCSAVLAEWKRRK   62 (70)
T ss_dssp             SSCCCSCSEEECCTTSSCCEEEECCTTTTSSCCEEECGGGGS-SCHHHHHHHHHHH
T ss_pred             eEEEEEEEEEEEcCCCcEEEEEEEECCCCCCCCceecHHHHh-hhHHHHHHHHHhc
Confidence            46899999998777 9998 999999987  56688888763 7999988887754

>2k1b_A Chromobox protein homolog 7; alpha/beta protein, chromatin regulator, nucleus, repressor, transcription, transcription regulation; NMR {Homo sapiens} PDB: 2l12_A* 2l1b_A*

Probab=98.00  E-value=1.7e-06  Score=63.63  Aligned_cols=27  Identities=15%  Similarity=0.091  Sum_probs=25.5

Q ss_pred             cccCCCCCCCCCCCCCCchHHHHhhhc
Q psy8405          41 NNQGLKSGDHENIHNVNTSKIGIKTEE   67 (225)
Q Consensus        41 ~~~~~~~ntWEp~~nL~c~~lI~~~e~   67 (225)
                      ++|+..+|||||++||+|++||.+|++
T Consensus        44 kGy~~~~~TWEp~enL~~~~li~~F~~   70 (73)
T 2k1b_A           44 KGWPPKYSTWEPEEHILDPRLVMAYEE   70 (73)
T ss_dssp             TTCCGGGCCEEETTSCSCHHHHHHHHT
T ss_pred             CCCCcccCeecchHHCCCHHHHHHHHH
Confidence            578889999999999999999999998

>1q3l_A Heterochromatin protein 1; chromodomain, HP1, chromatin, methyllysine, monomethyllysine, structural protein; HET: MLZ; 1.64A {Drosophila melanogaster} SCOP: b.34.13.2 PDB: 1kne_A* 1kna_A*

Probab=98.00  E-value=4.6e-07  Score=66.06  Aligned_cols=28  Identities=11%  Similarity=0.058  Sum_probs=25.7

Q ss_pred             cccCCCCCCCCCCCCCCchHHHHhhhcC
Q psy8405          41 NNQGLKSGDHENIHNVNTSKIGIKTEEN   68 (225)
Q Consensus        41 ~~~~~~~ntWEp~~nL~c~~lI~~~e~~   68 (225)
                      ++|+..+|||||++||+|++||.+|+..
T Consensus        39 kGy~~~~~TWEp~enL~c~~lI~~F~~~   66 (69)
T 1q3l_A           39 KGYPETENTWEPENNLDCQDLIQQYEAS   66 (69)
T ss_dssp             TTSCGGGCEEEEGGGEECHHHHHHHHHH
T ss_pred             cCCCcccCCccchHHCCCHHHHHHHHHH
Confidence            5788889999999999999999999983

>2d9u_A Chromobox protein homolog 2 (isoform 2); chromobox homolog 2, chromo domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.00  E-value=6.3e-06  Score=60.10  Aligned_cols=50  Identities=26%  Similarity=0.416  Sum_probs=41.4

Q ss_pred             CCcccceeeeeeeCCceEEEEEeCCCC--CcceeehhHHHhhCCHHHHHHHHhh
Q psy8405         158 NLPVEEIIGATIEVGFPAYLVTWEGSD--EADLLPAEICKRKYPQPLIRFFEQH  209 (225)
Q Consensus       158 GLepEkIIGatd~~GeL~FLVKWKg~d--e~DlVpA~eaneKcPQmVIkFYEer  209 (225)
                      -+++|+||+....+|.+.|||||+|.+  ...+.|+..  ..||.+|-+|...+
T Consensus        10 ey~VE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~n--l~~~~li~~f~~~~   61 (74)
T 2d9u_A           10 VFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEEN--ILDPRLLLAFQKKE   61 (74)
T ss_dssp             CCCEEEEEEEEEETTEEEEEEEETTSCTTTCEEEEGGG--CCCHHHHHHHHHHH
T ss_pred             cEEEEEEEEEEEeCCcEEEEEEECCCCCccCccccHHH--CCCHHHHHHHHHhh
Confidence            478999999998899999999999986  556888875  45788888887643

>2dnt_A Chromodomain protein, Y chromosome-like, isoform B; histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.13.2

Probab=97.99  E-value=5.2e-06  Score=60.97  Aligned_cols=52  Identities=25%  Similarity=0.406  Sum_probs=42.3

Q ss_pred             CCcccceeeeee-eCCceEEEEEeCCCC--CcceeehhHHHhhCCHHHHHHHHhhc
Q psy8405         158 NLPVEEIIGATI-EVGFPAYLVTWEGSD--EADLLPAEICKRKYPQPLIRFFEQHL  210 (225)
Q Consensus       158 GLepEkIIGatd-~~GeL~FLVKWKg~d--e~DlVpA~eaneKcPQmVIkFYEerL  210 (225)
                      -++||+||+... .+|.+.|||||+|.+  ...+.|...+. .||++|-+|...+.
T Consensus        13 ~y~VE~Il~~r~~~~g~~~YlVKWkGy~~~~~TWEp~~~l~-~~~~li~~f~~~~~   67 (78)
T 2dnt_A           13 LYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLV-NCEEYIHDFNRRHT   67 (78)
T ss_dssp             SCCCCCEEEEEECTTSCEEEEECBTTBCGGGCEEEETTTCT-TCHHHHHHHHHHHS
T ss_pred             eEEEEEEEEEEEcCCCcEEEEEEECCCCccCCceecHHHHH-hHHHHHHHHHhhhh
Confidence            478999999875 579999999999987  56688988763 59999888877654

>2kvm_A Chromobox protein homolog 7; histone modification, lysine methylation, chromobox, polycom chromatin-binding; HET: MLY; NMR {Mus musculus}

Probab=97.97  E-value=5.7e-06  Score=60.21  Aligned_cols=49  Identities=27%  Similarity=0.414  Sum_probs=41.0

Q ss_pred             CCcccceeeeeeeCCceEEEEEeCCCCC--cceeehhHHHhhCCHHHHHHHHh
Q psy8405         158 NLPVEEIIGATIEVGFPAYLVTWEGSDE--ADLLPAEICKRKYPQPLIRFFEQ  208 (225)
Q Consensus       158 GLepEkIIGatd~~GeL~FLVKWKg~de--~DlVpA~eaneKcPQmVIkFYEe  208 (225)
                      -++||+||+....+|.+.|||||+|.+.  ..+.|+..+  .||.+|.+|.+.
T Consensus        13 ~y~VE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~~L--~~~~li~~f~~~   63 (74)
T 2kvm_A           13 VFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHI--LDPRLVMAYEEK   63 (74)
T ss_dssp             CCCEEEEEEEEEETTEEEEEEEETTSCGGGCEEEETTTC--SCHHHHHHHHHH
T ss_pred             cEEEEEEEEEEEeCCcEEEEEEEcCCCCccCeEeeHHHC--CCHHHHHHHHHH
Confidence            3689999999989999999999999864  458888855  489888888764

>3h91_A Chromobox protein homolog 2; human chromobox homolog 2, CBX2, structural genomics, structural genomics consortium, SGC, chromatin regulator, D binding, nucleus; HET: M3L; 1.50A {Homo sapiens} SCOP: b.34.13.2 PDB: 2k28_A 3i8z_A

Probab=97.96  E-value=1.1e-06  Score=60.47  Aligned_cols=27  Identities=11%  Similarity=0.105  Sum_probs=25.1

Q ss_pred             cccCCCCCCCCCCCCCCchHHHHhhhc
Q psy8405          41 NNQGLKSGDHENIHNVNTSKIGIKTEE   67 (225)
Q Consensus        41 ~~~~~~~ntWEp~~nL~c~~lI~~~e~   67 (225)
                      ++|+..+|||||++||.|++||.+|+.
T Consensus        26 kGy~~~~~TWEp~~nl~~~~li~~f~~   52 (54)
T 3h91_A           26 RGWSSKHNSWEPEENILDPRLLLAFQK   52 (54)
T ss_dssp             TTSCGGGCEEEEGGGBCSHHHHHHHHC
T ss_pred             eCCCCcCCCeecHhHCCCHHHHHHHHh
Confidence            678888999999999999999999987

>2dnv_A Chromobox protein homolog 8; chromo domain, histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.34.13.2

Probab=97.96  E-value=3.3e-06  Score=59.93  Aligned_cols=29  Identities=17%  Similarity=0.153  Sum_probs=26.2

Q ss_pred             cccCCCCCCCCCCCCCCchHHHHhhhcCC
Q psy8405          41 NNQGLKSGDHENIHNVNTSKIGIKTEENP   69 (225)
Q Consensus        41 ~~~~~~~ntWEp~~nL~c~~lI~~~e~~~   69 (225)
                      ++|...+|||||++||.|++||.+|++.+
T Consensus        33 kGy~~~~~TWEp~~~l~~~~li~~f~~~~   61 (64)
T 2dnv_A           33 KGWSQKYSTWEPEENILDARLLAAFESGP   61 (64)
T ss_dssp             SSCCCSSCCEEETTTCCCHHHHHHHHCCT
T ss_pred             CCCCcccCCccCHhHCCCHHHHHHHHHHc
Confidence            57888899999999999999999999844

>3g7l_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, silencing, cell cycle, chromosome partition, DNA-binding, nucleus; HET: M3L; 2.20A {Schizosaccharomyces pombe}

Probab=97.92  E-value=9.8e-07  Score=62.25  Aligned_cols=30  Identities=10%  Similarity=-0.016  Sum_probs=25.7

Q ss_pred             cccCCCCCCCCCCCCCCchHHHHhhhcCCC
Q psy8405          41 NNQGLKSGDHENIHNVNTSKIGIKTEENPT   70 (225)
Q Consensus        41 ~~~~~~~ntWEp~~nL~c~~lI~~~e~~~~   70 (225)
                      +.|+..+|||||++||+|++||.+|-...+
T Consensus        31 kGy~~~~~TWEp~~nl~~~~li~~~~~~rK   60 (61)
T 3g7l_A           31 AGYDWYDNTWEPEQNLFGAEKVLKKWKKRK   60 (61)
T ss_dssp             TTSCGGGCEEEEGGGGTBCHHHHHHHHHC-
T ss_pred             eCCCCcCCceeeHhHCCCHHHHHHHHHHhc
Confidence            567888999999999999999999987543

>3lwe_A M-phase phosphoprotein 8; MPP8, structural genomics, structural genomics consortium, S repeat, nucleus, cell cycle; 2.05A {Homo sapiens} SCOP: b.34.13.0 PDB: 3r93_A* 3svm_A* 3qo2_A*

Probab=97.83  E-value=1.1e-06  Score=62.05  Aligned_cols=29  Identities=3%  Similarity=0.011  Sum_probs=25.9

Q ss_pred             cccCCCCCCCCCCCCC-CchHHHHhhhcCC
Q psy8405          41 NNQGLKSGDHENIHNV-NTSKIGIKTEENP   69 (225)
Q Consensus        41 ~~~~~~~ntWEp~~nL-~c~~lI~~~e~~~   69 (225)
                      ++|+..+|||||++|| ||++||.+|++.+
T Consensus        27 kGy~~~~~TWEp~~nl~~~~~li~~f~~~~   56 (62)
T 3lwe_A           27 KGYTSDDDTWEPEIHLEDCKEVLLEFRKKI   56 (62)
T ss_dssp             TTSCGGGCEEEEHHHHTTCHHHHHHHHHHH
T ss_pred             eCCCCcCCCeeeHhHhhccHHHHHHHHHhh
Confidence            5778889999999999 9999999999843

>2rsn_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, RNA-mediated gene SIL chromosomal protein, methylation; HET: M3L; NMR {Schizosaccharomyces pombe}

Probab=97.83  E-value=1.9e-06  Score=63.40  Aligned_cols=28  Identities=14%  Similarity=0.019  Sum_probs=25.5

Q ss_pred             ccccCCCCCCCCCCCCC-CchHHHHhhhc
Q psy8405          40 ENNQGLKSGDHENIHNV-NTSKIGIKTEE   67 (225)
Q Consensus        40 ~~~~~~~~ntWEp~~nL-~c~~lI~~~e~   67 (225)
                      =++|+..+|||||++|| ||++||.+|++
T Consensus        44 WkGy~~~~~TWEp~~nl~~~~~li~~f~~   72 (75)
T 2rsn_A           44 WAGYDWYDNTWEPEQNLFGAEKVLKKWKK   72 (75)
T ss_dssp             EESSCGGGCEEEEGGGGTTTHHHHHHHHH
T ss_pred             ECCCCCcCCeeecHHHccChHHHHHHHHH
Confidence            35788899999999999 79999999998

>2rso_A Chromatin-associated protein SWI6; chromodomain, silencing, chromosomal protein, Met transcription; NMR {Schizosaccharomyces pombe}

Probab=97.80  E-value=3.6e-06  Score=64.00  Aligned_cols=27  Identities=0%  Similarity=-0.135  Sum_probs=24.5

Q ss_pred             cccC-CCCCCCCCCCCC-CchHHHHhhhc
Q psy8405          41 NNQG-LKSGDHENIHNV-NTSKIGIKTEE   67 (225)
Q Consensus        41 ~~~~-~~~ntWEp~~nL-~c~~lI~~~e~   67 (225)
                      ++|+ ..+|||||++|| ||++||.+|++
T Consensus        55 kGy~~~~~~TWEP~~nl~~c~~li~~f~~   83 (92)
T 2rso_A           55 EGYDDPSDNTWSSEADCSGCKQLIEAYWN   83 (92)
T ss_dssp             TTCCCCTTSEEECGGGGGTSHHHHHHHHH
T ss_pred             ccCCCcccCccccHHHHhhHHHHHHHHHH
Confidence            5677 578999999999 89999999998

>2b2y_A CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 b.34.13.2 PDB: 2b2u_A* 2b2v_A* 2b2w_A 2b2t_A*

Probab=97.80  E-value=1.7e-05  Score=66.91  Aligned_cols=54  Identities=20%  Similarity=0.463  Sum_probs=46.1

Q ss_pred             CCCCCcccceeeeee---eCCceEEEEEeCCC--CCcceeehhHHHhhCCHHHHHHHHh
Q psy8405         155 IDRNLPVEEIIGATI---EVGFPAYLVTWEGS--DEADLLPAEICKRKYPQPLIRFFEQ  208 (225)
Q Consensus       155 F~RGLepEkIIGatd---~~GeL~FLVKWKg~--de~DlVpA~eaneKcPQmVIkFYEe  208 (225)
                      +...++||+||+...   .+|.+.|||||+|.  +++.+.|+..+...||++|-+|+..
T Consensus       127 ~~e~~~VErIi~~r~~~~~~g~~~yLVKWkgl~Y~e~TWE~~~~i~~~~~~~I~~f~~R  185 (187)
T 2b2y_A          127 HKQYQIVGRIIAHSNQKSAAGYPDYYCKWQGLPYSECSWEDGALISKKFQACIDEYFSR  185 (187)
T ss_dssp             HHHTTSEEEEEEEEEEECTTSCEEEEEEETTSCGGGCEEECHHHHHHHHHHHHHHHHHT
T ss_pred             hhhcceeEEEEEeeeecCCCCcEEEEEEECCCChhhCcccchhhhhhhHHHHHHHHHhh
Confidence            344579999999876   68999999999997  6888999999988999998887753

>2kvm_A Chromobox protein homolog 7; histone modification, lysine methylation, chromobox, polycom chromatin-binding; HET: MLY; NMR {Mus musculus}

Probab=97.75  E-value=5.4e-06  Score=60.34  Aligned_cols=28  Identities=14%  Similarity=0.098  Sum_probs=25.8

Q ss_pred             cccCCCCCCCCCCCCCCchHHHHhhhcC
Q psy8405          41 NNQGLKSGDHENIHNVNTSKIGIKTEEN   68 (225)
Q Consensus        41 ~~~~~~~ntWEp~~nL~c~~lI~~~e~~   68 (225)
                      ++|+..+|||||++||.|++||.+|++.
T Consensus        36 kGy~~~~~TWEp~~~L~~~~li~~f~~~   63 (74)
T 2kvm_A           36 KGWPPKYSTWEPEEHILDPRLVMAYEEK   63 (74)
T ss_dssp             TTSCGGGCEEEETTTCSCHHHHHHHHHH
T ss_pred             cCCCCccCeEeeHHHCCCHHHHHHHHHH
Confidence            5788889999999999999999999984

>4hae_A CDY-like 2, chromodomain Y-like protein 2; protein binding, structural genomics consortiu; 2.00A {Homo sapiens}

Probab=97.74  E-value=1.1e-06  Score=65.60  Aligned_cols=29  Identities=10%  Similarity=-0.006  Sum_probs=26.1

Q ss_pred             ccccCCCCCCCCCCCCC-CchHHHHhhhcC
Q psy8405          40 ENNQGLKSGDHENIHNV-NTSKIGIKTEEN   68 (225)
Q Consensus        40 ~~~~~~~~ntWEp~~nL-~c~~lI~~~e~~   68 (225)
                      =++|+..+|||||++|| ||++||.+|++.
T Consensus        46 WkGy~~~~~TWEp~~nl~~~~~li~~f~~~   75 (81)
T 4hae_A           46 WKGYGSTEDTWEPEHHLLHCEEFIDEFNGL   75 (81)
T ss_dssp             ETTCCGGGCEEEEGGGEEECCCCCCTTCSS
T ss_pred             ECCCCCCCCeEEeHHHhhhhHHHHHHHHHH
Confidence            35788999999999999 899999999983

>2dnt_A Chromodomain protein, Y chromosome-like, isoform B; histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.13.2

Probab=97.73  E-value=6e-06  Score=60.64  Aligned_cols=27  Identities=7%  Similarity=-0.002  Sum_probs=24.9

Q ss_pred             cccCCCCCCCCCCCCC-CchHHHHhhhc
Q psy8405          41 NNQGLKSGDHENIHNV-NTSKIGIKTEE   67 (225)
Q Consensus        41 ~~~~~~~ntWEp~~nL-~c~~lI~~~e~   67 (225)
                      ++|+..+|||||++|| +|++||.+|+.
T Consensus        37 kGy~~~~~TWEp~~~l~~~~~li~~f~~   64 (78)
T 2dnt_A           37 KGYDSEDDTWEPEQHLVNCEEYIHDFNR   64 (78)
T ss_dssp             TTBCGGGCEEEETTTCTTCHHHHHHHHH
T ss_pred             CCCCccCCceecHHHHHhHHHHHHHHHh
Confidence            5677789999999999 99999999998

>2rsn_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, RNA-mediated gene SIL chromosomal protein, methylation; HET: M3L; NMR {Schizosaccharomyces pombe}

Probab=97.71  E-value=3.3e-05  Score=56.74  Aligned_cols=49  Identities=18%  Similarity=0.396  Sum_probs=36.1

Q ss_pred             Ccccceeeeee-eCCceEEEEEeCCCCC--cceeehhHHHhhCCHHHHHHHHhh
Q psy8405         159 LPVEEIIGATI-EVGFPAYLVTWEGSDE--ADLLPAEICKRKYPQPLIRFFEQH  209 (225)
Q Consensus       159 LepEkIIGatd-~~GeL~FLVKWKg~de--~DlVpA~eaneKcPQmVIkFYEer  209 (225)
                      +++|+||+... .+|.+.|||||+|.+.  ..+.|+..+. -|+.+ |+.|+++
T Consensus        22 yeVE~Il~~r~~~~g~~~YlVkWkGy~~~~~TWEp~~nl~-~~~~l-i~~f~~~   73 (75)
T 2rsn_A           22 YEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNLF-GAEKV-LKKWKKR   73 (75)
T ss_dssp             EEEEEEEEEEECSSSCEEEEEEEESSCGGGCEEEEGGGGT-TTHHH-HHHHHHH
T ss_pred             EEEEEEEEEEEcCCCcEEEEEEECCCCCcCCeeecHHHcc-ChHHH-HHHHHHh
Confidence            78999999864 5799999999999864  4588887653 35555 5555543

>2d9u_A Chromobox protein homolog 2 (isoform 2); chromobox homolog 2, chromo domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.52  E-value=1.8e-05  Score=57.66  Aligned_cols=27  Identities=11%  Similarity=0.105  Sum_probs=25.3

Q ss_pred             cccCCCCCCCCCCCCCCchHHHHhhhc
Q psy8405          41 NNQGLKSGDHENIHNVNTSKIGIKTEE   67 (225)
Q Consensus        41 ~~~~~~~ntWEp~~nL~c~~lI~~~e~   67 (225)
                      ++|+..+|||||++||.|++||.+|+.
T Consensus        33 kGy~~~~~TWEp~~nl~~~~li~~f~~   59 (74)
T 2d9u_A           33 RGWSSKHNSWEPEENILDPRLLLAFQK   59 (74)
T ss_dssp             TTSCTTTCEEEEGGGCCCHHHHHHHHH
T ss_pred             CCCCCccCccccHHHCCCHHHHHHHHH
Confidence            578888999999999999999999998

>1x3p_A Cpsrp43; chromo-2 domain, chloroplasts, LHCP, protein translocation, unknown function; NMR {Arabidopsis thaliana} SCOP: b.34.13.2

Probab=97.52  E-value=3.4e-05  Score=53.47  Aligned_cols=22  Identities=18%  Similarity=0.238  Sum_probs=20.6

Q ss_pred             CCCCCCCCCCCCchHHHHhhhcC
Q psy8405          46 KSGDHENIHNVNTSKIGIKTEEN   68 (225)
Q Consensus        46 ~~ntWEp~~nL~c~~lI~~~e~~   68 (225)
                      .+|||||++||+ ++||.+|++.
T Consensus        28 ~~~TWEp~~nL~-~~li~~f~~~   49 (54)
T 1x3p_A           28 SDATWEPQDNVD-STLVLLYQQQ   49 (54)
T ss_dssp             SSCSCSTTCCSS-SSSHHHHTSS
T ss_pred             CcCCccchHHCC-HHHHHHHHHH
Confidence            799999999999 9999999983

>1x3p_A Cpsrp43; chromo-2 domain, chloroplasts, LHCP, protein translocation, unknown function; NMR {Arabidopsis thaliana} SCOP: b.34.13.2

Probab=97.48  E-value=7.9e-06  Score=56.70  Aligned_cols=45  Identities=22%  Similarity=0.451  Sum_probs=37.8

Q ss_pred             cccceeeeeeeC-Cce-EEEEEeCCCCCcceeehhHHHhhCCHHHHHHHH
Q psy8405         160 PVEEIIGATIEV-GFP-AYLVTWEGSDEADLLPAEICKRKYPQPLIRFFE  207 (225)
Q Consensus       160 epEkIIGatd~~-GeL-~FLVKWKg~de~DlVpA~eaneKcPQmVIkFYE  207 (225)
                      ++|+||+....+ |.+ .|||||+|.+...+-|++.+.   |.+|-+|+.
T Consensus         2 ~VE~Ild~r~~~~g~~~~YlVKWkgy~~~TWEp~~nL~---~~li~~f~~   48 (54)
T 1x3p_A            2 VAESVIGKRVGDDGKTIEYLVKWTDMSDATWEPQDNVD---STLVLLYQQ   48 (54)
T ss_dssp             CSSCCCCBSSCSSSCCCCBCCCCSSSSSCSCSTTCCSS---SSSHHHHTS
T ss_pred             eEEEEEEEEEcCCCcEEEEEEEECCCCcCCccchHHCC---HHHHHHHHH
Confidence            689999987666 998 999999999888899998764   888777664

>4hae_A CDY-like 2, chromodomain Y-like protein 2; protein binding, structural genomics consortiu; 2.00A {Homo sapiens}

Probab=97.39  E-value=2.3e-05  Score=58.39  Aligned_cols=49  Identities=20%  Similarity=0.276  Sum_probs=39.2

Q ss_pred             Ccccceeeee-eeCCceEEEEEeCCCCC--cceeehhHHHhhCCHHHHHHHHh
Q psy8405         159 LPVEEIIGAT-IEVGFPAYLVTWEGSDE--ADLLPAEICKRKYPQPLIRFFEQ  208 (225)
Q Consensus       159 LepEkIIGat-d~~GeL~FLVKWKg~de--~DlVpA~eaneKcPQmVIkFYEe  208 (225)
                      +++|+||+.. ..+|.+.|||||+|.+.  ..+.|+..+. -||.+|-+|...
T Consensus        24 yeVE~Ild~R~~~~g~~~YlVKWkGy~~~~~TWEp~~nl~-~~~~li~~f~~~   75 (81)
T 4hae_A           24 YEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLL-HCEEFIDEFNGL   75 (81)
T ss_dssp             EEEEEEEEEEECTTSCEEEEEEETTCCGGGCEEEEGGGEE-ECCCCCCTTCSS
T ss_pred             EEEEEEEEeEECCCCeEEEEEEECCCCCCCCeEEeHHHhh-hhHHHHHHHHHH
Confidence            7899999986 45799999999999864  4588888663 599998777554

>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}

Probab=97.26  E-value=1.5e-05  Score=77.73  Aligned_cols=56  Identities=21%  Similarity=0.280  Sum_probs=39.7

Q ss_pred             CCCCCCcccceeeeee-----eCCceEEEEEeCCCC--CcceeehhHHHhhCCHHHHHHHHhhc
Q psy8405         154 GIDRNLPVEEIIGATI-----EVGFPAYLVTWEGSD--EADLLPAEICKRKYPQPLIRFFEQHL  210 (225)
Q Consensus       154 GF~RGLepEkIIGatd-----~~GeL~FLVKWKg~d--e~DlVpA~eaneKcPQmVIkFYEerL  210 (225)
                      +|.+.++||+||+...     ..|.++|||||++..  .+.+=....+....|.. |+.|+.+.
T Consensus       141 ~~~~~~~veRii~~~~~~~~~~~~~~~yLvKW~~L~y~~~tWe~~~~~~~~~~~~-i~~~~~r~  203 (800)
T 3mwy_W          141 EFEEFHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVKLAPEQ-VKHFQNRE  203 (800)
T ss_dssp             HHTTTTCEEEECCCCCEECTTSCEECBCCEEETTSCSTTCBCCBHHHHTTTCHHH-HHHHHHTT
T ss_pred             ccccccceeEEEeecccccCCCCCceEEEEEecCCCcccccccchhhhhhhhHHH-HHHHHHhh
Confidence            5788999999999876     667899999999854  44454555554445555 55555553

>2epb_A Chromodomain-helicase-DNA-binding protein 6; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.91  E-value=0.001  Score=47.79  Aligned_cols=50  Identities=24%  Similarity=0.342  Sum_probs=35.1

Q ss_pred             CCCC-Ccccceeeeee----eCC--ceEEEEEeCCCC--CcceeehhHHHhhCCHHHHHHHH
Q psy8405         155 IDRN-LPVEEIIGATI----EVG--FPAYLVTWEGSD--EADLLPAEICKRKYPQPLIRFFE  207 (225)
Q Consensus       155 F~RG-LepEkIIGatd----~~G--eL~FLVKWKg~d--e~DlVpA~eaneKcPQmVIkFYE  207 (225)
                      |... ++||+||+...    .+|  .+.|||||+|..  ++.+-|+..+   +|++|-+|..
T Consensus         7 ~~pe~~~VErIl~~r~~~~~~~g~~~~eYLVKWkgl~y~e~TWE~~~~l---~~~~I~~f~~   65 (68)
T 2epb_A            7 GNPDYVEVDRILEVAHTKDAETGEEVTHYLVKWCSLPYEESTWELEEDV---DPAKVKEFES   65 (68)
T ss_dssp             SCSSCCCCCEEEEEEEEECSSSCCEEEEEEEECTTSCGGGCCEEETTTS---CHHHHHHHHH
T ss_pred             CCCCceEEeEEEEEEecccccCCCcceEEEEEEcCCChhcCccccchhc---CHHHHHHHHH
Confidence            4444 48999999653    247  899999999964  5567777665   6777555443

>2ee1_A Chromodomain helicase-DNA-binding protein 4; EC 3.6.1.-, ATP- dependent helicase CHD4, CHD-4, MI-2 autoantigen 218 kDa protein, MI2-beta; NMR {Homo sapiens}

Probab=96.83  E-value=0.00099  Score=47.89  Aligned_cols=52  Identities=13%  Similarity=0.325  Sum_probs=37.5

Q ss_pred             CCCCCCC-Ccccceeeeee-eCCceEEEEEeCCC--CCcceeehhHHHhhCCHH---HHHHH
Q psy8405         152 NLGIDRN-LPVEEIIGATI-EVGFPAYLVTWEGS--DEADLLPAEICKRKYPQP---LIRFF  206 (225)
Q Consensus       152 ~~GF~RG-LepEkIIGatd-~~GeL~FLVKWKg~--de~DlVpA~eaneKcPQm---VIkFY  206 (225)
                      ..||.-. +.+|+||+... .+|.+.|||||++.  +++.+=+..   ..||.+   |-+|+
T Consensus         4 ~~~~~pe~~~VeRIi~~r~~~~g~~eYLVKWkgl~y~e~TWE~~~---~~~~~~~~~I~~y~   62 (64)
T 2ee1_A            4 GSSGKPEWMMIHRILNHSVDKKGHVHYLIKWRDLPYDQASWESED---VEIQDYDLFKQSYW   62 (64)
T ss_dssp             CSSSCCSSCCCCCCCEEEECTTCCEEEEECCTTSCTTTCEEEETT---CCCTTHHHHHHHHH
T ss_pred             ccccCCCcEEEEEEEEEEecCCCCEEEEEEEcCCCcccCcccCCc---ccCcchHHHHHHHH
Confidence            4566655 59999998874 58999999999996  455566665   246665   55554

>2epb_A Chromodomain-helicase-DNA-binding protein 6; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.44  E-value=0.00079  Score=48.41  Aligned_cols=26  Identities=12%  Similarity=-0.047  Sum_probs=22.5

Q ss_pred             cccCCCCCCCCCCCCCCchHHHHhhhc
Q psy8405          41 NNQGLKSGDHENIHNVNTSKIGIKTEE   67 (225)
Q Consensus        41 ~~~~~~~ntWEp~~nL~c~~lI~~~e~   67 (225)
                      +.++-.++||||++|| |+++|.+|++
T Consensus        40 kgl~y~e~TWE~~~~l-~~~~I~~f~~   65 (68)
T 2epb_A           40 CSLPYEESTWELEEDV-DPAKVKEFES   65 (68)
T ss_dssp             TTSCGGGCCEEETTTS-CHHHHHHHHH
T ss_pred             cCCChhcCccccchhc-CHHHHHHHHH
Confidence            3456789999999999 6799999997

>2b2y_C CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 PDB: 2b2u_C* 2b2v_C* 2b2t_C* 2b2w_C

Probab=95.44  E-value=0.0066  Score=48.38  Aligned_cols=43  Identities=21%  Similarity=0.272  Sum_probs=31.0

Q ss_pred             eeeeeeeCCceEEEEEeCCCCCcc--eeehhHHHhhCC-----HHHHHHHHh
Q psy8405         164 IIGATIEVGFPAYLVTWEGSDEAD--LLPAEICKRKYP-----QPLIRFFEQ  208 (225)
Q Consensus       164 IIGatd~~GeL~FLVKWKg~de~D--lVpA~eaneKcP-----QmVIkFYEe  208 (225)
                      |++.....|.+.|||||+|.+..+  +-|...+  .||     .+|..|...
T Consensus        48 ildkR~~~g~~eYlVKWkG~s~~~nTWEp~enL--~~~~~~g~kklenY~kk   97 (115)
T 2b2y_C           48 GFEKNKEPGEIQYLIKWKGWSHIHNTWETEETL--KQQNVRGMKKLDNYKKK   97 (115)
T ss_dssp             TCCTTSSSCEEEEEEEETTSCGGGCEEECHHHH--HHHTCBCTHHHHHHHC-
T ss_pred             ccccceeCCcEEEEEEECCCCchhcccCCHHHc--CCccchHHHHHHHHHHH
Confidence            466556789999999999988765  5666654  454     478888764

>2b2y_A CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 b.34.13.2 PDB: 2b2u_A* 2b2v_A* 2b2w_A 2b2t_A*

Probab=94.30  E-value=0.039  Score=46.32  Aligned_cols=45  Identities=20%  Similarity=0.269  Sum_probs=35.0

Q ss_pred             eeeeeeCCceEEEEEeCCCC--CcceeehhHHH---hhCCHHHHHHHHhh
Q psy8405         165 IGATIEVGFPAYLVTWEGSD--EADLLPAEICK---RKYPQPLIRFFEQH  209 (225)
Q Consensus       165 IGatd~~GeL~FLVKWKg~d--e~DlVpA~ean---eKcPQmVIkFYEer  209 (225)
                      ++.....|...|||||+|.+  ...++|...+.   ..++.++-.|....
T Consensus        49 ld~r~~~~~~eYlVKWkg~s~~h~tWe~~~~L~~~~~~~~~kl~nf~kk~   98 (187)
T 2b2y_A           49 FEKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKD   98 (187)
T ss_dssp             CC-CCSCCEEEEEEEETTSCGGGCEEECHHHHHHTTCBCHHHHHHHHHHH
T ss_pred             cCccccCCcEEEEEEECCCCcccCeeCCHHHhCccchhhHHHHHHHHHhh
Confidence            44445678999999999988  56799999886   46788888887764

>2b2y_C CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 PDB: 2b2u_C* 2b2v_C* 2b2t_C* 2b2w_C

Probab=93.93  E-value=0.0039  Score=49.69  Aligned_cols=29  Identities=3%  Similarity=-0.097  Sum_probs=23.4

Q ss_pred             cccCCCCCCCCCCCCCCchH-----HHHhhhcCC
Q psy8405          41 NNQGLKSGDHENIHNVNTSK-----IGIKTEENP   69 (225)
Q Consensus        41 ~~~~~~~ntWEp~~nL~c~~-----lI~~~e~~~   69 (225)
                      +.|.-.+|||||++||+|++     ++..|....
T Consensus        65 kG~s~~~nTWEp~enL~~~~~~g~kklenY~kk~   98 (115)
T 2b2y_C           65 KGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKD   98 (115)
T ss_dssp             TTSCGGGCEEECHHHHHHHTCBCTHHHHHHHC--
T ss_pred             CCCCchhcccCCHHHcCCccchHHHHHHHHHHHH
Confidence            45677899999999999964     899999843

>2ee1_A Chromodomain helicase-DNA-binding protein 4; EC 3.6.1.-, ATP- dependent helicase CHD4, CHD-4, MI-2 autoantigen 218 kDa protein, MI2-beta; NMR {Homo sapiens}

Probab=93.88  E-value=0.015  Score=41.65  Aligned_cols=25  Identities=8%  Similarity=-0.029  Sum_probs=21.1

Q ss_pred             ccCCCCCCCCCCCCCCchHH---HHhhhc
Q psy8405          42 NQGLKSGDHENIHNVNTSKI---GIKTEE   67 (225)
Q Consensus        42 ~~~~~~ntWEp~~nL~c~~l---I~~~e~   67 (225)
                      .+.-.++||||++ |+|+++   |.+|..
T Consensus        36 gl~y~e~TWE~~~-~~~~~~~~~I~~y~~   63 (64)
T 2ee1_A           36 DLPYDQASWESED-VEIQDYDLFKQSYWN   63 (64)
T ss_dssp             TSCTTTCEEEETT-CCCTTHHHHHHHHHH
T ss_pred             CCCcccCcccCCc-ccCcchHHHHHHHHh
Confidence            3455799999999 899999   999974

>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A

Probab=91.09  E-value=0.022  Score=47.50  Aligned_cols=26  Identities=8%  Similarity=0.068  Sum_probs=23.0

Q ss_pred             ccCCCCCCCCCCCCCC--chHHHHhhhc
Q psy8405          42 NQGLKSGDHENIHNVN--TSKIGIKTEE   67 (225)
Q Consensus        42 ~~~~~~ntWEp~~nL~--c~~lI~~~e~   67 (225)
                      .++-.+.||||+++|+  |+++|.+|++
T Consensus       149 gl~y~e~TWE~~~~~~~~~~~~I~~y~~  176 (177)
T 2h1e_A          149 RLNYDEATWENATDIVKLAPEQVKHFQK  176 (177)
T ss_dssp             TSCSTTCEEEEHHHHHHHCHHHHHHHTC
T ss_pred             CCCcccccccChHHhhhhHHHHHHHHHh
Confidence            4555999999999997  9999999986

>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}

Probab=85.23  E-value=0.58  Score=45.62  Aligned_cols=39  Identities=10%  Similarity=0.167  Sum_probs=31.3

Q ss_pred             CCCcccceeeeeee-------------------CCceEEEEEeCCCC--CcceeehhHHH
Q psy8405         157 RNLPVEEIIGATIE-------------------VGFPAYLVTWEGSD--EADLLPAEICK  195 (225)
Q Consensus       157 RGLepEkIIGatd~-------------------~GeL~FLVKWKg~d--e~DlVpA~ean  195 (225)
                      ....+|+||+-.-.                   +|.+-|||||||..  ...|+|.+.+.
T Consensus        36 ~~~~ve~vl~~r~~~~~~~~~~~~~~~~~~~~~~~~~eylvKWkg~s~~hntWe~~e~L~   95 (800)
T 3mwy_W           36 DFHGIDIVINHRLKTSLEEGKVLEKTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIG   95 (800)
T ss_dssp             CCCBCSEEEEEECCCC--------CCSCCHHHHHHHCEEEEECSSSCTTSCEEECHHHHC
T ss_pred             CCCchhhhccccccccccCCccccccCcCcCCCcCceEEEEEeCCcceeeccccCHHHHh
Confidence            45679999976655                   78899999999987  55688888765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	225
d2fmma1	68	b.34.13.2 (A:108-175) Heterochromatin protein 1, H	9e-19

>d2fmma1 b.34.13.2 (A:108-175) Heterochromatin protein 1, HP1 {Mouse (Mus musculus), HP1 beta (MOD1, M31) [TaxId: 10090]} Length = 68

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: Heterochromatin protein 1, HP1
species: Mouse (Mus musculus), HP1 beta (MOD1, M31) [TaxId: 10090]

 Score = 75.1 bits (185), Expect = 9e-19
 Identities = 28/64 (43%), Positives = 38/64 (59%)

Query: 154 GIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLVFP 213
           G  R L  E IIGAT   G   +L+ W+ SDEADL+PA+    K PQ +I F+E+ L + 
Sbjct: 5   GFARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWH 64

Query: 214 SENN 217
           S  +
Sbjct: 65  SYPS 68

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	225
d2fmma1	68	Heterochromatin protein 1, HP1 {Mouse (Mus musculu	99.96
d1e0ba_	61	Heterochromatin protein 1, HP1 {Fission yeast (Sch	99.03
d1pfba_	55	Polycomb protein, Pc {Fruit fly (Drosophila melano	98.18
d1q3la_	52	Heterochromatin protein 1, HP1 {Fruit fly (Drosoph	98.1
d2dnva1	52	Chromobox protein homolog 8 {Mouse (Mus musculus)	98.06
d1pfba_	55	Polycomb protein, Pc {Fruit fly (Drosophila melano	98.06
d2dnva1	52	Chromobox protein homolog 8 {Mouse (Mus musculus)	97.96
d1guwa_	73	Heterochromatin protein 1, HP1 {Mouse (Mus musculu	97.95
d2dnta1	66	Chromodomain protein, Y-like isoform {Human (Homo	97.93
d1q3la_	52	Heterochromatin protein 1, HP1 {Fruit fly (Drosoph	97.88
d2dnta1	66	Chromodomain protein, Y-like isoform {Human (Homo	97.84
d1guwa_	73	Heterochromatin protein 1, HP1 {Mouse (Mus musculu	97.84
d1g6za_	70	Histone methyltransferase clr4, chromo domain {Fis	97.69
d1g6za_	70	Histone methyltransferase clr4, chromo domain {Fis	97.59
d2dy8a1	69	ATP-dependent helicase CHD1 (Chromo domain protein	97.58
d2b2ya1	80	ATP-dependent helicase CHD1 (Chromo domain protein	97.51
d1x3pa1	54	CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId	97.37
d1x3pa1	54	CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId	97.27
d3deoa1	44	CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId	96.62
d2huga1	55	CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId	96.16
d2dy8a1	69	ATP-dependent helicase CHD1 (Chromo domain protein	95.77
d2b2ya1	80	ATP-dependent helicase CHD1 (Chromo domain protein	95.39
d2dy7a1	81	ATP-dependent helicase CHD1 (Chromo domain protein	90.27
d2dy7a1	81	ATP-dependent helicase CHD1 (Chromo domain protein	82.88
d2b2ya2	95	ATP-dependent helicase CHD1 (Chromo domain protein	81.22

>d2fmma1 b.34.13.2 (A:108-175) Heterochromatin protein 1, HP1 {Mouse (Mus musculus), HP1 beta (MOD1, M31) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: Heterochromatin protein 1, HP1
species: Mouse (Mus musculus), HP1 beta (MOD1, M31) [TaxId: 10090]

Probab=99.96  E-value=1.3e-30  Score=189.63  Aligned_cols=67  Identities=42%  Similarity=0.640  Sum_probs=64.9

Q ss_pred             ccCCCCCCCCcccceeeeeeeCCceEEEEEeCCCCCcceeehhHHHhhCCHHHHHHHHhhccCCCCC
Q psy8405         150 DMNLGIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLVFPSEN  216 (225)
Q Consensus       150 ~~~~GF~RGLepEkIIGatd~~GeL~FLVKWKg~de~DlVpA~eaneKcPQmVIkFYEerL~w~~~~  216 (225)
                      ++|+||+|||+||+|+|+|+.+|+|||||||||++++|+||+.+|+.+||||||+|||+||+|++++
T Consensus         1 ~~p~Gf~RGl~~ekIig~t~~~gel~flvkwk~~d~~dlVp~~~a~~~~Pq~VI~fYE~rl~w~~~~   67 (68)
T d2fmma1           1 EKPRGFARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHSYP   67 (68)
T ss_dssp             CCCCGGGGCCCEEEEEEEEEETTEEEEEEEETTCSCCEEEEHHHHHHHCHHHHHHHHHTTEEESSCC
T ss_pred             CCCcccccCCCccEEEEeEccCCeEEEEEEECCCChhhheeHHHHHHhCCHHHHHHHHHhcccCCCC
Confidence            4689999999999999999999999999999999999999999999999999999999999999875

>d1e0ba_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Fission yeast (Schizosaccharomyces pombe), SWI6 [TaxId: 4896]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: Heterochromatin protein 1, HP1
species: Fission yeast (Schizosaccharomyces pombe), SWI6 [TaxId: 4896]

Probab=99.03  E-value=8.6e-11  Score=83.26  Aligned_cols=47  Identities=28%  Similarity=0.584  Sum_probs=41.1

Q ss_pred             ccceeeeeeeCCceEEEEEeCCCCCcceeehhHHHhhCCHHHHHHHHhhc
Q psy8405         161 VEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHL  210 (225)
Q Consensus       161 pEkIIGatd~~GeL~FLVKWKg~de~DlVpA~eaneKcPQmVIkFYEerL  210 (225)
                      ++.|..  ..+|+|+.++.|+| ++...+|...||+||||.|++|||+||
T Consensus        15 VdTier--~~~~~Li~yL~WkN-Gkks~~~~~~~Y~KCPqKmL~fYE~HL   61 (61)
T d1e0ba_          15 IDTIER--KDDGTLEIYLTWKN-GAISHHPSTITNKKCPQKMLQFYESHL   61 (61)
T ss_dssp             EEEEEE--CTTSCEEEEEEETT-SCEEEEEHHHHHHHSHHHHHHHHHTCC
T ss_pred             EEEEEE--CCCCeEEEEEEEcC-CcEEEeeHHHHHHHhhHHHHHHHHhcC
Confidence            444544  46689999999999 688999999999999999999999997

>d1pfba_ b.34.13.2 (A:) Polycomb protein, Pc {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: Polycomb protein, Pc
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.18  E-value=6e-07  Score=60.77  Aligned_cols=49  Identities=18%  Similarity=0.264  Sum_probs=40.9

Q ss_pred             CcccceeeeeeeCCceEEEEEeCCCC--CcceeehhHHHhhCCHHHHHHHHhh
Q psy8405         159 LPVEEIIGATIEVGFPAYLVTWEGSD--EADLLPAEICKRKYPQPLIRFFEQH  209 (225)
Q Consensus       159 LepEkIIGatd~~GeL~FLVKWKg~d--e~DlVpA~eaneKcPQmVIkFYEer  209 (225)
                      +++|+|++.....|.+.|||+|+|.+  ...+.|+..+  .||.+|-+|..++
T Consensus         4 yeVE~Il~~r~~~~~~~YlVkW~Gy~~~~~TWEp~~nl--~~~~li~~f~~~~   54 (55)
T d1pfba_           4 YAAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNI--LDRRLIDIYEQTN   54 (55)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGC--CSTHHHHHHHTSC
T ss_pred             EEEEEEEeEEEeCCeEEEEEEECCCCCCCCcCccHhHC--CCHHHHHHHHHhc
Confidence            57899999999999999999999987  4568888866  5999887776653

>d1q3la_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: Heterochromatin protein 1, HP1
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.10  E-value=1.3e-06  Score=58.30  Aligned_cols=48  Identities=21%  Similarity=0.419  Sum_probs=41.4

Q ss_pred             CcccceeeeeeeCCceEEEEEeCCCCCc--ceeehhHHHhhCCHHHHHHHHh
Q psy8405         159 LPVEEIIGATIEVGFPAYLVTWEGSDEA--DLLPAEICKRKYPQPLIRFFEQ  208 (225)
Q Consensus       159 LepEkIIGatd~~GeL~FLVKWKg~de~--DlVpA~eaneKcPQmVIkFYEe  208 (225)
                      +++|+||+....+|.+.|||||+|.+..  .+.|+..+  .||.+|-+|..+
T Consensus         2 yeVE~Il~~r~~~~~~~YlVkW~Gy~~~~~tWEp~~~l--~~~~~i~~f~~~   51 (52)
T d1q3la_           2 YAVEKIIDRRVRKGMVEYYLKWKGYPETENTWEPENNL--DCQDLIQQYEAS   51 (52)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGE--ECHHHHHHHHHH
T ss_pred             ceEEEEEEEEEeCCeEEEEEEECCCCCccCcEecHHHC--CCHHHHHHHHhc
Confidence            5799999999999999999999998744  58999877  599998888654

>d2dnva1 b.34.13.2 (A:7-58) Chromobox protein homolog 8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: Chromobox protein homolog 8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.06  E-value=6.3e-07  Score=59.94  Aligned_cols=26  Identities=15%  Similarity=0.065  Sum_probs=24.5

Q ss_pred             cccCCCCCCCCCCCCCCchHHHHhhh
Q psy8405          41 NNQGLKSGDHENIHNVNTSKIGIKTE   66 (225)
Q Consensus        41 ~~~~~~~ntWEp~~nL~c~~lI~~~e   66 (225)
                      ++|+..+|||||++||.|++||.+|+
T Consensus        27 ~gy~~~~~TWEp~~nl~~~~li~~fe   52 (52)
T d2dnva1          27 KGWSQKYSTWEPEENILDARLLAAFE   52 (52)
T ss_dssp             SSCCCSSCCEEETTTCCCHHHHHHHH
T ss_pred             CCCCCcCCeEccHHHCCChHHHHhcC
Confidence            57899999999999999999999996

>d1pfba_ b.34.13.2 (A:) Polycomb protein, Pc {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: Polycomb protein, Pc
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.06  E-value=3.3e-07  Score=62.08  Aligned_cols=28  Identities=11%  Similarity=-0.016  Sum_probs=25.8

Q ss_pred             cccCCCCCCCCCCCCCCchHHHHhhhcC
Q psy8405          41 NNQGLKSGDHENIHNVNTSKIGIKTEEN   68 (225)
Q Consensus        41 ~~~~~~~ntWEp~~nL~c~~lI~~~e~~   68 (225)
                      ..|+..+|||||++||.|++||.+|++.
T Consensus        26 ~Gy~~~~~TWEp~~nl~~~~li~~f~~~   53 (55)
T d1pfba_          26 KGWNQRYNTWEPEVNILDRRLIDIYEQT   53 (55)
T ss_dssp             TTSCGGGCEEEEGGGCCSTHHHHHHHTS
T ss_pred             CCCCCCCCcCccHhHCCCHHHHHHHHHh
Confidence            5788899999999999999999999984

>d2dnva1 b.34.13.2 (A:7-58) Chromobox protein homolog 8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: Chromobox protein homolog 8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.96  E-value=3.4e-06  Score=56.25  Aligned_cols=46  Identities=26%  Similarity=0.379  Sum_probs=39.0

Q ss_pred             CCcccceeeeeeeCCceEEEEEeCCCC--CcceeehhHHHhhCCHHHHHH
Q psy8405         158 NLPVEEIIGATIEVGFPAYLVTWEGSD--EADLLPAEICKRKYPQPLIRF  205 (225)
Q Consensus       158 GLepEkIIGatd~~GeL~FLVKWKg~d--e~DlVpA~eaneKcPQmVIkF  205 (225)
                      -+++|+||+....+|.+.|||||+|.+  ...+.|+..+  .||.+|-+|
T Consensus         4 ~yeVE~Il~~r~~~~~~~YlVkW~gy~~~~~TWEp~~nl--~~~~li~~f   51 (52)
T d2dnva1           4 VFAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENI--LDARLLAAF   51 (52)
T ss_dssp             CCCCCCEEEEEESSSSEEEEECCSSCCCSSCCEEETTTC--CCHHHHHHH
T ss_pred             eEEEEEEEEEEEeCCeEEEEEEECCCCCcCCeEccHHHC--CChHHHHhc
Confidence            378999999999999999999999976  4458998876  699887766

>d1guwa_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Mouse (Mus musculus), HP1 beta (MOD1, M31) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: Heterochromatin protein 1, HP1
species: Mouse (Mus musculus), HP1 beta (MOD1, M31) [TaxId: 10090]

Probab=97.95  E-value=8.9e-07  Score=62.90  Aligned_cols=30  Identities=7%  Similarity=0.015  Sum_probs=26.7

Q ss_pred             cccCCCCCCCCCCCCCCchHHHHhhhcCCC
Q psy8405          41 NNQGLKSGDHENIHNVNTSKIGIKTEENPT   70 (225)
Q Consensus        41 ~~~~~~~ntWEp~~nL~c~~lI~~~e~~~~   70 (225)
                      ..|+..+|||||++||+|++||.+|++..+
T Consensus        36 ~Gy~~~~~TWEp~~nl~~~~~i~~f~~~~~   65 (73)
T d1guwa_          36 KGFSDEDNTWEPEENLDCPDLIAEFLQSQK   65 (73)
T ss_dssp             SSSCTTSCCCEETTTEECHHHHHHHHHHHC
T ss_pred             CCCCCcCCcCcChHHCCCHHHHHHHHHHhh
Confidence            578899999999999999999999998433

>d2dnta1 b.34.13.2 (A:8-73) Chromodomain protein, Y-like isoform {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: Chromodomain protein, Y-like isoform
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=3.9e-06  Score=58.08  Aligned_cols=53  Identities=25%  Similarity=0.366  Sum_probs=43.3

Q ss_pred             CCcccceeeee-eeCCceEEEEEeCCCCCc--ceeehhHHHhhCCHHHHHHHHhhcc
Q psy8405         158 NLPVEEIIGAT-IEVGFPAYLVTWEGSDEA--DLLPAEICKRKYPQPLIRFFEQHLV  211 (225)
Q Consensus       158 GLepEkIIGat-d~~GeL~FLVKWKg~de~--DlVpA~eaneKcPQmVIkFYEerL~  211 (225)
                      -+++|+||+.. ..+|.+.|||+|+|.+..  .+.|++.+ ..||.+|=+|+..+-.
T Consensus         6 ~y~VE~Ild~R~~~~g~~~YlVkW~Gy~~~~~TWEp~~~l-~~~~~~i~~f~~~~~~   61 (66)
T d2dnta1           6 LYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHL-VNCEEYIHDFNRRHTE   61 (66)
T ss_dssp             SCCCCCEEEEEECTTSCEEEEECBTTBCGGGCEEEETTTC-TTCHHHHHHHHHHHSC
T ss_pred             eEEEEEEEEEEEcCCCcEEEEEEECCCCCccCeEecHHHH-hhhHHHHHHHHHHccc
Confidence            47899999986 467999999999998644  58999987 3599999998887643

>d1q3la_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: Heterochromatin protein 1, HP1
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.88  E-value=5.8e-07  Score=60.04  Aligned_cols=27  Identities=11%  Similarity=0.049  Sum_probs=25.2

Q ss_pred             cccCCCCCCCCCCCCCCchHHHHhhhc
Q psy8405          41 NNQGLKSGDHENIHNVNTSKIGIKTEE   67 (225)
Q Consensus        41 ~~~~~~~ntWEp~~nL~c~~lI~~~e~   67 (225)
                      ..|+..+|||||++||+|+++|.+|++
T Consensus        24 ~Gy~~~~~tWEp~~~l~~~~~i~~f~~   50 (52)
T d1q3la_          24 KGYPETENTWEPENNLDCQDLIQQYEA   50 (52)
T ss_dssp             TTSCGGGCEEEEGGGEECHHHHHHHHH
T ss_pred             CCCCCccCcEecHHHCCCHHHHHHHHh
Confidence            567888999999999999999999997

>d2dnta1 b.34.13.2 (A:8-73) Chromodomain protein, Y-like isoform {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: Chromodomain protein, Y-like isoform
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=1.5e-06  Score=60.26  Aligned_cols=27  Identities=7%  Similarity=-0.002  Sum_probs=25.3

Q ss_pred             cccCCCCCCCCCCCCC-CchHHHHhhhc
Q psy8405          41 NNQGLKSGDHENIHNV-NTSKIGIKTEE   67 (225)
Q Consensus        41 ~~~~~~~ntWEp~~nL-~c~~lI~~~e~   67 (225)
                      .+|+..+|||||++|| +|+++|.+|++
T Consensus        30 ~Gy~~~~~TWEp~~~l~~~~~~i~~f~~   57 (66)
T d2dnta1          30 KGYDSEDDTWEPEQHLVNCEEYIHDFNR   57 (66)
T ss_dssp             TTBCGGGCEEEETTTCTTCHHHHHHHHH
T ss_pred             CCCCCccCeEecHHHHhhhHHHHHHHHH
Confidence            5788999999999999 79999999998

>d1guwa_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Mouse (Mus musculus), HP1 beta (MOD1, M31) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: Heterochromatin protein 1, HP1
species: Mouse (Mus musculus), HP1 beta (MOD1, M31) [TaxId: 10090]

Probab=97.84  E-value=2.7e-06  Score=60.32  Aligned_cols=53  Identities=21%  Similarity=0.437  Sum_probs=44.6

Q ss_pred             CCcccceeeeeeeCCceEEEEEeCCCCCc--ceeehhHHHhhCCHHHHHHHHhhccC
Q psy8405         158 NLPVEEIIGATIEVGFPAYLVTWEGSDEA--DLLPAEICKRKYPQPLIRFFEQHLVF  212 (225)
Q Consensus       158 GLepEkIIGatd~~GeL~FLVKWKg~de~--DlVpA~eaneKcPQmVIkFYEerL~w  212 (225)
                      -+++|+||+.....|.+.|||||+|.+..  .+.|...+  .||++|-+|+.++-.-
T Consensus        13 eyeVE~Il~~r~~~~~~~YlVkW~Gy~~~~~TWEp~~nl--~~~~~i~~f~~~~~~~   67 (73)
T d1guwa_          13 EYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENL--DCPDLIAEFLQSQKTA   67 (73)
T ss_dssp             CCBEEEECCCBCCTTCCEECEEESSSCTTSCCCEETTTE--ECHHHHHHHHHHHCSS
T ss_pred             eEEEEEEEEEEEcCCcEEEEEEECCCCCcCCcCcChHHC--CCHHHHHHHHHHhhcc
Confidence            47899999999899999999999997644  58998876  5999999998876443

>d1g6za_ b.34.13.2 (A:) Histone methyltransferase clr4, chromo domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: Histone methyltransferase clr4, chromo domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.69  E-value=2.7e-06  Score=59.50  Aligned_cols=28  Identities=18%  Similarity=0.085  Sum_probs=25.7

Q ss_pred             cccCCCCCCCCCCCCC-CchHHHHhhhcC
Q psy8405          41 NNQGLKSGDHENIHNV-NTSKIGIKTEEN   68 (225)
Q Consensus        41 ~~~~~~~ntWEp~~nL-~c~~lI~~~e~~   68 (225)
                      .+|+..++||||++|| +|+++|.+|+.+
T Consensus        33 ~Gy~~~~~TWEp~~~L~~~~~~i~~f~~~   61 (70)
T d1g6za_          33 LNYSSRSDTWEPPENLSGCSAVLAEWKRR   61 (70)
T ss_dssp             TTTTSSCCEEECGGGGSSCHHHHHHHHHH
T ss_pred             CCCCcccCeeecHHHHhhhHHHHHHHHHH
Confidence            5788999999999999 799999999983

>d1g6za_ b.34.13.2 (A:) Histone methyltransferase clr4, chromo domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: Histone methyltransferase clr4, chromo domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.59  E-value=2.7e-05  Score=54.24  Aligned_cols=52  Identities=15%  Similarity=0.201  Sum_probs=40.7

Q ss_pred             CCcccceeeee-e-eCCceEEEEEeCCCC--CcceeehhHHHhhCCHHHHHHHHhhc
Q psy8405         158 NLPVEEIIGAT-I-EVGFPAYLVTWEGSD--EADLLPAEICKRKYPQPLIRFFEQHL  210 (225)
Q Consensus       158 GLepEkIIGat-d-~~GeL~FLVKWKg~d--e~DlVpA~eaneKcPQmVIkFYEerL  210 (225)
                      -+++|+||+.. . .+|.+.|||+|+|.+  ...+.|+..+ ..||.+|-+|...+-
T Consensus         8 eyeVE~Il~~R~~~~~~~~~YlVkW~Gy~~~~~TWEp~~~L-~~~~~~i~~f~~~~~   63 (70)
T d1g6za_           8 EYEVERIVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPENL-SGCSAVLAEWKRRKR   63 (70)
T ss_dssp             SSCCCSCSEEECCTTSSCCEEEECCTTTTSSCCEEECGGGG-SSCHHHHHHHHHHHT
T ss_pred             EEEEEEEEEEEEccCCCeEEEEEEeCCCCcccCeeecHHHH-hhhHHHHHHHHHHhh
Confidence            47899999985 2 346799999999986  5568998876 369999888877543

>d2dy8a1 b.34.13.2 (A:279-347) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: ATP-dependent helicase CHD1 (Chromo domain protein 1)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.58  E-value=5.2e-05  Score=52.54  Aligned_cols=50  Identities=26%  Similarity=0.259  Sum_probs=39.7

Q ss_pred             CCcccceeeeee-----eCCceEEEEEeCCC--CCcceeehhHHHhhCCHHHHHHHH
Q psy8405         158 NLPVEEIIGATI-----EVGFPAYLVTWEGS--DEADLLPAEICKRKYPQPLIRFFE  207 (225)
Q Consensus       158 GLepEkIIGatd-----~~GeL~FLVKWKg~--de~DlVpA~eaneKcPQmVIkFYE  207 (225)
                      =++||+||+...     ..|.+.|||||+|.  .++.+.|+..+...||.+|-+|..
T Consensus         6 ~~~VErIld~r~~~~~~~~~~~eYlVKWkg~~y~~~TWE~~~~l~~~~~~~i~~f~~   62 (69)
T d2dy8a1           6 FHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVKLAPEQVKHFQN   62 (69)
T ss_dssp             SSCEEEEEEEEEEECSSSCEEEEEEEEESCCSSCCCEEEEHHHHHHHSHHHHHHHHH
T ss_pred             cccceEEeeEEeeeccCCCCeEEEEEEeCCCChhhCccccHHHhhhhhHHHHHHHHH
Confidence            368999998752     24689999999995  467799999887789998777754

>d2b2ya1 b.34.13.2 (A:108-187) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: ATP-dependent helicase CHD1 (Chromo domain protein 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=5e-05  Score=54.33  Aligned_cols=50  Identities=22%  Similarity=0.510  Sum_probs=39.4

Q ss_pred             Ccccceeeee---eeCCceEEEEEeCCCC--CcceeehhHHHhhCCHHHHHHHHh
Q psy8405         159 LPVEEIIGAT---IEVGFPAYLVTWEGSD--EADLLPAEICKRKYPQPLIRFFEQ  208 (225)
Q Consensus       159 LepEkIIGat---d~~GeL~FLVKWKg~d--e~DlVpA~eaneKcPQmVIkFYEe  208 (225)
                      +.||+||+..   ..+|.+.|||||+|+.  .+.+-|...+...|+.+|=.|+..
T Consensus        24 ~~VERIi~~r~~~~~~g~~~YLVKWkg~~y~~~TWE~~~~l~~~~~~~I~~f~~R   78 (80)
T d2b2ya1          24 QIVGRIIAHSNQKSAAGYPDYYCKWQGLPYSECSWEDGALISKKFQACIDEYFSR   78 (80)
T ss_dssp             TSEEEEEEEEEEECTTSCEEEEEEETTSCGGGCEEECHHHHHHHHHHHHHHHHHT
T ss_pred             eeeEEEEEEEecccCCCcEEEEEEeCCCChhhCccccHHHHhHhHHHHHHHHHHh
Confidence            5899999864   3468899999999965  556888887777788887777654

>d1x3pa1 b.34.13.2 (A:1-54) CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: CpSRP43
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.37  E-value=7.2e-06  Score=55.99  Aligned_cols=47  Identities=21%  Similarity=0.343  Sum_probs=38.8

Q ss_pred             cccceeeee--eeCCceEEEEEeCCCCCcceeehhHHHhhCCHHHHHHHHhh
Q psy8405         160 PVEEIIGAT--IEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQH  209 (225)
Q Consensus       160 epEkIIGat--d~~GeL~FLVKWKg~de~DlVpA~eaneKcPQmVIkFYEer  209 (225)
                      .+|+||+..  ..+|.+.|||||+|.++..+.|+..+   +|.+|-+|-+.+
T Consensus         2 vvE~Il~~R~~~~~~~~eYlVkW~gy~~~TWEP~~nl---~~~li~~f~~~~   50 (54)
T d1x3pa1           2 VAESVIGKRVGDDGKTIEYLVKWTDMSDATWEPQDNV---DSTLVLLYQQQQ   50 (54)
T ss_dssp             CSSCCCCBSSCSSSCCCCBCCCCSSSSSCSCSTTCCS---SSSSHHHHTSSC
T ss_pred             HHHHHHHHHccCCCCeEEEEEEECCCCCCCccchHHC---CHHHHHHHHHhC
Confidence            479999987  34588999999999998899999876   589888876654

>d1x3pa1 b.34.13.2 (A:1-54) CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: CpSRP43
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.27  E-value=4.6e-05  Score=51.84  Aligned_cols=22  Identities=18%  Similarity=0.238  Sum_probs=19.8

Q ss_pred             CCCCCCCCCCCCchHHHHhhhcC
Q psy8405          46 KSGDHENIHNVNTSKIGIKTEEN   68 (225)
Q Consensus        46 ~~ntWEp~~nL~c~~lI~~~e~~   68 (225)
                      .++||||.+||+ ++||.+|++.
T Consensus        28 ~~~TWEP~~nl~-~~li~~f~~~   49 (54)
T d1x3pa1          28 SDATWEPQDNVD-STLVLLYQQQ   49 (54)
T ss_dssp             SSCSCSTTCCSS-SSSHHHHTSS
T ss_pred             CCCCccchHHCC-HHHHHHHHHh
Confidence            589999999995 7999999984

>d3deoa1 b.34.13.2 (A:85-128) CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: CpSRP43
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.62  E-value=0.0011  Score=43.30  Aligned_cols=34  Identities=26%  Similarity=0.602  Sum_probs=29.6

Q ss_pred             cccceeeeeee-CCceEEEEEeCCCCCcceeehhH
Q psy8405         160 PVEEIIGATIE-VGFPAYLVTWEGSDEADLLPAEI  193 (225)
Q Consensus       160 epEkIIGatd~-~GeL~FLVKWKg~de~DlVpA~e  193 (225)
                      ++.+|+|+.-. +|...|||.||+.-.+++||+.-
T Consensus         1 ev~kIi~sR~~~dgg~eYliEWkD~h~pSWvP~~~   35 (44)
T d3deoa1           1 EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSY   35 (44)
T ss_dssp             CEEEEEEEEEETTTEEEEEEEETTCCCCEEEEGGG
T ss_pred             CcchhcceeecCCCceeEEEEeccCCCCCcCCHHH
Confidence            47799999754 88999999999998999999864

>d2huga1 b.34.13.2 (A:3-57) CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: CpSRP43
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.16  E-value=0.00061  Score=46.62  Aligned_cols=46  Identities=17%  Similarity=0.311  Sum_probs=36.2

Q ss_pred             cccceeeeeeeCCceEEEEEeCCCCCcceeehhHHHhhCCHHHHHHHHhh
Q psy8405         160 PVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQH  209 (225)
Q Consensus       160 epEkIIGatd~~GeL~FLVKWKg~de~DlVpA~eaneKcPQmVIkFYEer  209 (225)
                      +|++|+++...++..-|||+|++...+++||+..+.    .=||.=||+-
T Consensus         7 EV~~Il~~R~~g~~~EYLVeWkDg~~~sWV~a~~Ia----~Dvv~dfEag   52 (55)
T d2huga1           7 EVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVA----EDVAKDYEDG   52 (55)
T ss_dssp             CSSCCCCCCCSSBCCCCEEECTTSSSEEECCTTBCC----HHHHHTTHHH
T ss_pred             hHHHHHhhhccCCCeEEEEEEcCCCCCccccHHHHH----HHHHHHHHcc
Confidence            689999998888889999999999999999987543    2345445543

>d2dy8a1 b.34.13.2 (A:279-347) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: ATP-dependent helicase CHD1 (Chromo domain protein 1)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.77  E-value=0.00039  Score=47.91  Aligned_cols=27  Identities=7%  Similarity=0.065  Sum_probs=24.6

Q ss_pred             cccCCCCCCCCCCCCCC--chHHHHhhhc
Q psy8405          41 NNQGLKSGDHENIHNVN--TSKIGIKTEE   67 (225)
Q Consensus        41 ~~~~~~~ntWEp~~nL~--c~~lI~~~e~   67 (225)
                      ++++..++||||++||.  |+++|.+|++
T Consensus        34 kg~~y~~~TWE~~~~l~~~~~~~i~~f~~   62 (69)
T d2dy8a1          34 RRLNYDEATWENATDIVKLAPEQVKHFQN   62 (69)
T ss_dssp             SCCSSCCCEEEEHHHHHHHSHHHHHHHHH
T ss_pred             CCCChhhCccccHHHhhhhhHHHHHHHHH
Confidence            57888999999999994  8999999998

>d2b2ya1 b.34.13.2 (A:108-187) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: ATP-dependent helicase CHD1 (Chromo domain protein 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.39  E-value=0.00055  Score=48.70  Aligned_cols=27  Identities=4%  Similarity=-0.230  Sum_probs=24.8

Q ss_pred             cccCCCCCCCCCCCCC--CchHHHHhhhc
Q psy8405          41 NNQGLKSGDHENIHNV--NTSKIGIKTEE   67 (225)
Q Consensus        41 ~~~~~~~ntWEp~~nL--~c~~lI~~~e~   67 (225)
                      ++++..++||||++||  .|+++|.+|++
T Consensus        49 kg~~y~~~TWE~~~~l~~~~~~~I~~f~~   77 (80)
T d2b2ya1          49 QGLPYSECSWEDGALISKKFQACIDEYFS   77 (80)
T ss_dssp             TTSCGGGCEEECHHHHHHHHHHHHHHHHH
T ss_pred             CCCChhhCccccHHHHhHhHHHHHHHHHH
Confidence            6788999999999999  49999999998

>d2dy7a1 b.34.13.2 (A:172-252) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: ATP-dependent helicase CHD1 (Chromo domain protein 1)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.27  E-value=0.043  Score=39.11  Aligned_cols=49  Identities=10%  Similarity=0.063  Sum_probs=33.5

Q ss_pred             cccceeeeeeeCCceEEEEEeCCCCCc--ceeehhHHHhhCCH--HHHHHHHhh
Q psy8405         160 PVEEIIGATIEVGFPAYLVTWEGSDEA--DLLPAEICKRKYPQ--PLIRFFEQH  209 (225)
Q Consensus       160 epEkIIGatd~~GeL~FLVKWKg~de~--DlVpA~eaneKcPQ--mVIkFYEer  209 (225)
                      ..+.|+......+++.|||||+|.+..  .+.|.+.+.. |.-  .|-.|+-..
T Consensus        26 ~~e~i~d~~~~~~~~eylVKW~g~~~~~~tWe~~~~L~~-~~~~~k~~ny~k~~   78 (81)
T d2dy7a1          26 LEKTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIGQ-VRGLKRLDNYCKQF   78 (81)
T ss_dssp             CCCCCSSHHHHHHHCEEEEECCCCSSCCCEEECHHHHTT-SSHHHHHHHHHHHH
T ss_pred             eeeeeccccCCCCcEEEEEEECCCCcccCcccCHHHHhh-cchHHHHHHHHHHH
Confidence            455566666677889999999997744  5888877753 443  355555443

>d2dy7a1 b.34.13.2 (A:172-252) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: ATP-dependent helicase CHD1 (Chromo domain protein 1)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.88  E-value=0.078  Score=37.68  Aligned_cols=26  Identities=4%  Similarity=-0.028  Sum_probs=20.4

Q ss_pred             cccCCCCCCCCCCCCCC-chHH--HHhhh
Q psy8405          41 NNQGLKSGDHENIHNVN-TSKI--GIKTE   66 (225)
Q Consensus        41 ~~~~~~~ntWEp~~nL~-c~~l--I~~~e   66 (225)
                      ++++...|||||.++|. |.-+  +..|.
T Consensus        47 ~g~~~~~~tWe~~~~L~~~~~~~k~~ny~   75 (81)
T d2dy7a1          47 TDESHLHNTWETYESIGQVRGLKRLDNYC   75 (81)
T ss_dssp             CCCSSCCCEEECHHHHTTSSHHHHHHHHH
T ss_pred             CCCCcccCcccCHHHHhhcchHHHHHHHH
Confidence            68999999999999997 6544  55554

>d2b2ya2 b.34.13.2 (A:13-107) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: ATP-dependent helicase CHD1 (Chromo domain protein 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.22  E-value=0.53  Score=34.32  Aligned_cols=27  Identities=30%  Similarity=0.429  Sum_probs=21.3

Q ss_pred             eeCCceEEEEEeCCCCCc--ceeehhHHH
Q psy8405         169 IEVGFPAYLVTWEGSDEA--DLLPAEICK  195 (225)
Q Consensus       169 d~~GeL~FLVKWKg~de~--DlVpA~ean  195 (225)
                      ...|++-|||||+|.+..  .+.|.+++.
T Consensus        41 ~~~~~~eylIKWkg~s~~hntWe~~e~L~   69 (95)
T d2b2ya2          41 KEPGEIQYLIKWKGWSHIHNTWETEETLK   69 (95)
T ss_dssp             CSCCEEEEEEEETTSCGGGCEEECHHHHH
T ss_pred             CCCCcEEEEEEeCCCCcccCcccCHHHHh
Confidence            456889999999998754  578877765