Psyllid ID: psy8434

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110----
Protein Sequence
YSQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVVGEMKAFRILEVLSNDHLSENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLER
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccHHHccHHHHHHHHHHHHHHHHHHcHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccEEEEHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccEcccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHc
Coil and Loop (DISEMBL)
YSQVVLDVNrslkrfppgipieQRLALQDQLTLLILKVIHayprlryyqgyHDVAITFLLVVGEMKAFRILEVLSNdhlsenmrdTMDETSYVLNYMFplvnkrssdlcefler
Flexible Loop (DISEMBL)
ysqvvldvnrslkrfppgipiEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVVGEMKAFRILEVLsndhlsenmRDTMDETSYVLNYMFplvnkrssdlcefler
Low Complexity Region (SEG)
YSQVVLDVNRSLKRFPPGIPIEqrlalqdqltllilKVIHAYPRLRYYQGYHDVAITFLLVVGEMKAFRILEVLSNDHLSENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLER
Disordered region (IsUnstruct)
*******VNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVVGEMKAFRILEVLSNDHLSENMRDTMDETSYVLNYMFPLVNKR***L******
Disordered Region (DISOPRED)
YSQVVLDVNRSLKRFPPGI********QDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVVGEMKAFRILEVLSNDHLSENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLER
Disordered Region (DISEMBL)
YSQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVVGEMKAFRILEVLSNDHLSENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLER
Disordered Region (DISPRO)
YSQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVVGEMKAFRILEVLSNDHLSENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLER
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
YSQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVVGEMKAFRILEVLSNDHLSENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLER
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	114	2.2.26 [Sep-21-2011]
Q9D9I4	402	TBC1 domain family member	yes	N/A	0.991	0.281	0.522	2e-28
Q96BZ9	403	TBC1 domain family member	yes	N/A	0.991	0.280	0.504	3e-25
Q2T9Q1	403	TBC1 domain family member	yes	N/A	0.991	0.280	0.495	8e-25
P43570	497	GTPase-activating protein	yes	N/A	0.5	0.114	0.4	6e-05
O94661	373	GTPase-activating protein	yes	N/A	0.938	0.286	0.336	0.0001

>sp|Q9D9I4|TBC20_MOUSE TBC1 domain family member 20 OS=Mus musculus GN=Tbc1d20 PE=2 SV=1

 Score =  124 bits (311), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 59/113 (52%), Positives = 83/113 (73%)

Query: 1   YSQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLL 60
           Y QV+LDV RSL+RFPPG+P EQR  LQ++L  +IL V+   P+L YYQGYHD+ +TFLL
Sbjct: 95  YQQVLLDVRRSLRRFPPGMPDEQREGLQEELIDIILLVLDRNPQLHYYQGYHDIVVTFLL 154

Query: 61  VVGEMKAFRILEVLSNDHLSENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLE 113
           VVGE  A  ++E LS  HL + M  TMD T ++LNY+ P++++ S +L +F++
Sbjct: 155 VVGERLATSLVEKLSTHHLRDFMDPTMDNTKHILNYLMPIIDQVSPELHDFMQ 207

May act as a GTPase-activating protein for Rab family protein(s).
Mus musculus (taxid: 10090)

>sp|Q96BZ9|TBC20_HUMAN TBC1 domain family member 20 OS=Homo sapiens GN=TBC1D20 PE=1 SV=1

 Score =  113 bits (283), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 57/113 (50%), Positives = 83/113 (73%)

Query: 1   YSQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLL 60
           Y QV+LDV RSL+RFPPG+P EQR  LQ++L  +IL ++   P+L YYQGYHD+ +TFLL
Sbjct: 96  YQQVLLDVRRSLRRFPPGMPEEQREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLL 155

Query: 61  VVGEMKAFRILEVLSNDHLSENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLE 113
           VVGE  A  ++E LS  HL + M  TMD T ++LNY+ P++++ + +L +F++
Sbjct: 156 VVGERLATSLVEKLSTHHLRDFMDPTMDNTKHILNYLMPIIDQVNPELHDFMQ 208

May act as a GTPase-activating protein for Rab family protein(s).

Homo sapiens (taxid: 9606)

>sp|Q2T9Q1|TBC20_BOVIN TBC1 domain family member 20 OS=Bos taurus GN=TBC1D20 PE=2 SV=1

 Score =  112 bits (279), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 56/113 (49%), Positives = 83/113 (73%)

Query: 1   YSQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLL 60
           Y QV+LDV RSL+RFPPG+P EQR  LQ++L  +IL ++   P+L YYQGYHD+ +TFLL
Sbjct: 96  YQQVLLDVRRSLRRFPPGMPEEQREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLL 155

Query: 61  VVGEMKAFRILEVLSNDHLSENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLE 113
           V+GE  A  ++E LS  HL + M  TMD T ++LNY+ P++++ + +L +F++
Sbjct: 156 VLGERLATSLVEKLSTHHLRDFMDPTMDNTKHILNYLMPIIDQVNPELHDFMQ 208

May act as a GTPase-activating protein for Rab family protein(s).

Bos taurus (taxid: 9913)

>sp|P43570|GYP8_YEAST GTPase-activating protein GYP8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GYP8 PE=1 SV=1

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 3/60 (5%)

Query: 2   SQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLV 61
            QV+LD  RS   F   +    +L L+  L  LI +V+  YP L YYQGYHD+   F++ 
Sbjct: 106 GQVILDAERS---FGGIVDKNLKLQLRKLLVELITRVLRKYPTLNYYQGYHDIVSVFIMC 162

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O94661|GYP10_SCHPO GTPase-activating protein gyp10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gyp10 PE=4 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 54/113 (47%), Gaps = 6/113 (5%)

Query: 2   SQVVLDVNRSLKRFP--PGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFL 59
           +QV LD  RS  ++   P +  + R     QLT L+  V   YP L YYQG HD+A   L
Sbjct: 73  NQVHLDSERSFFQYKLNPFLLRKHR----SQLTKLLSVVFKHYPELCYYQGLHDIAQILL 128

Query: 60  LVVGEMKAFRILEVLSNDHLSENMRDTMDETSYVLNYMFPLVNKRSSDLCEFL 112
           L +    A  ++E L    L + M  T+D T   L  +  ++  R   L E+L
Sbjct: 129 LTLPFSHALPLMEHLVFYRLRDFMLPTLDGTVKQLQLILAVIKARDPTLYEYL 181

Has a role in vesicular trafficking and septation during cytokinesis.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
312371051	377	hypothetical protein AND_22688 [Anophele	1.0	0.302	0.675	3e-38
157119455	462	hypothetical protein AaeL_AAEL001505 [Ae	1.0	0.246	0.666	8e-38
189237594	416	PREDICTED: similar to AGAP008312-PA [Tri	1.0	0.274	0.692	1e-37
158296813	408	AGAP008312-PA [Anopheles gambiae str. PE	1.0	0.279	0.666	1e-37
194864434	381	GG10918 [Drosophila erecta] gi|190662804	0.991	0.296	0.654	3e-36
195164480	379	GL21153 [Drosophila persimilis] gi|19410	1.0	0.300	0.649	4e-36
198458443	387	GA25512 [Drosophila pseudoobscura pseudo	1.0	0.294	0.649	4e-36
289742305	387	putative GTpase activator protein [Gloss	0.991	0.291	0.646	1e-35
195050778	385	GH13565 [Drosophila grimshawi] gi|193900	0.991	0.293	0.654	2e-35
442622255	371	CG17883, isoform D [Drosophila melanogas	0.991	0.304	0.646	2e-35

>gi|312371051|gb|EFR19318.1| hypothetical protein AND_22688 [Anopheles darlingi]

 Score =  162 bits (409), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 77/114 (67%), Positives = 95/114 (83%)

Query: 1   YSQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLL 60
           YSQVVLDVNRSLKRFPPGIP EQR+ALQDQLT+LIL+VI  YP L+YYQGYHDVAITFLL
Sbjct: 121 YSQVVLDVNRSLKRFPPGIPYEQRVALQDQLTVLILRVIIKYPHLKYYQGYHDVAITFLL 180

Query: 61  VVGEMKAFRILEVLSNDHLSENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLER 114
           VVGE  AF ++E+LS +HL E M++TM+ T   L +++PL+ + +S LC +LER
Sbjct: 181 VVGEEVAFHVMEILSTNHLVECMQETMEPTQRRLMFIYPLIRRENSALCTYLER 234

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157119455|ref|XP_001653390.1| hypothetical protein AaeL_AAEL001505 [Aedes aegypti] gi|108883173|gb|EAT47398.1| AAEL001505-PA [Aedes aegypti]

 Score =  160 bits (406), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 76/114 (66%), Positives = 96/114 (84%)

Query: 1   YSQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLL 60
           Y+QVVLDVNRSLKRFPPGIP EQR+ALQDQLT+LIL+VI  YP L+YYQGYHDVAITFLL
Sbjct: 170 YNQVVLDVNRSLKRFPPGIPYEQRVALQDQLTVLILRVIIKYPHLKYYQGYHDVAITFLL 229

Query: 61  VVGEMKAFRILEVLSNDHLSENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLER 114
           VVGE  AF ++E+LS +HL E M++TM+ T   L +++PLV + ++ LC++LER
Sbjct: 230 VVGEEVAFHVMEILSTNHLVECMQETMEPTQRRLMFIYPLVRRENAALCDYLER 283

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189237594|ref|XP_966645.2| PREDICTED: similar to AGAP008312-PA [Tribolium castaneum] gi|270006908|gb|EFA03356.1| hypothetical protein TcasGA2_TC013341 [Tribolium castaneum]

 Score =  160 bits (404), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 79/114 (69%), Positives = 92/114 (80%)

Query: 1   YSQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLL 60
           Y QVVLDVNRSLKRFPPGIP +QRLALQDQLT+LIL+VI  YP LRYYQGYHDVAITFLL
Sbjct: 124 YEQVVLDVNRSLKRFPPGIPYKQRLALQDQLTVLILRVIIKYPHLRYYQGYHDVAITFLL 183

Query: 61  VVGEMKAFRILEVLSNDHLSENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLER 114
           VVGE   F I+E LS DHL E M  TM++TSY L Y++PL+++    L EF++R
Sbjct: 184 VVGEALGFSIMERLSTDHLRECMEPTMEKTSYRLTYIYPLLSRVDPQLYEFMDR 237

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158296813|ref|XP_317154.4| AGAP008312-PA [Anopheles gambiae str. PEST] gi|157014892|gb|EAA12204.4| AGAP008312-PA [Anopheles gambiae str. PEST]

 Score =  160 bits (404), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 76/114 (66%), Positives = 95/114 (83%)

Query: 1   YSQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLL 60
           Y+QVVLDVNRSLKRFPPGIP EQR+ALQDQLT+LIL+VI  YP L+YYQGYHDVAITFLL
Sbjct: 115 YNQVVLDVNRSLKRFPPGIPYEQRVALQDQLTVLILRVIIKYPHLKYYQGYHDVAITFLL 174

Query: 61  VVGEMKAFRILEVLSNDHLSENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLER 114
           VVGE  AF ++E+LS +HL E M++TM+ T   L +++PLV + ++ LC +LER
Sbjct: 175 VVGEEVAFHVMEILSTNHLVECMQETMEPTQRRLMFIYPLVRRENAALCSYLER 228

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194864434|ref|XP_001970937.1| GG10918 [Drosophila erecta] gi|190662804|gb|EDV59996.1| GG10918 [Drosophila erecta]

 Score =  155 bits (391), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 74/113 (65%), Positives = 91/113 (80%)

Query: 1   YSQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLL 60
           Y+QVVLDVNRSLKRFPPGIP EQR+ALQDQLT+LIL+VI  YP LRYYQGYHDVA+TFLL
Sbjct: 93  YNQVVLDVNRSLKRFPPGIPYEQRIALQDQLTVLILRVIQKYPNLRYYQGYHDVAVTFLL 152

Query: 61  VVGEMKAFRILEVLSNDHLSENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLE 113
           VVGE  AF I+E LS  H SE M++TM+ T   L +M+P++   + +L +FL+
Sbjct: 153 VVGEETAFAIMEQLSKTHFSECMQETMEATQRRLMFMWPIIKFENPELFKFLQ 205

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195164480|ref|XP_002023075.1| GL21153 [Drosophila persimilis] gi|194105160|gb|EDW27203.1| GL21153 [Drosophila persimilis]

 Score =  155 bits (391), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 74/114 (64%), Positives = 92/114 (80%)

Query: 1   YSQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLL 60
           Y+QVVLDVNRSLKRFPPGIP EQR+ALQDQLT+LIL+VI  YP LRYYQGYHDVA+TFLL
Sbjct: 87  YNQVVLDVNRSLKRFPPGIPYEQRIALQDQLTVLILRVIKKYPNLRYYQGYHDVAVTFLL 146

Query: 61  VVGEMKAFRILEVLSNDHLSENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLER 114
           V GE  A+ I+E LS  H SE M++TM+ T   L +++P+VN  + +L +FL+R
Sbjct: 147 VAGEEVAYAIMEQLSTTHFSECMQETMEATQRRLMFIWPVVNFENPELYQFLQR 200

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198458443|ref|XP_002136173.1| GA25512 [Drosophila pseudoobscura pseudoobscura] gi|198142417|gb|EDY71168.1| GA25512 [Drosophila pseudoobscura pseudoobscura]

 Score =  155 bits (391), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 74/114 (64%), Positives = 92/114 (80%)

Query: 1   YSQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLL 60
           Y+QVVLDVNRSLKRFPPGIP EQR+ALQDQLT+LIL+VI  YP LRYYQGYHDVA+TFLL
Sbjct: 95  YNQVVLDVNRSLKRFPPGIPYEQRIALQDQLTVLILRVIKKYPNLRYYQGYHDVAVTFLL 154

Query: 61  VVGEMKAFRILEVLSNDHLSENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLER 114
           V GE  A+ I+E LS  H SE M++TM+ T   L +++P+VN  + +L +FL+R
Sbjct: 155 VAGEEVAYAIMEQLSTTHFSECMQETMEATQRRLMFIWPVVNFENPELYQFLQR 208

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289742305|gb|ADD19900.1| putative GTpase activator protein [Glossina morsitans morsitans]

 Score =  153 bits (386), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 73/113 (64%), Positives = 92/113 (81%)

Query: 1   YSQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLL 60
           Y+QVVLDVNRSLKRFPPGIP EQR+ALQDQLT+LI++VI  YP LRYYQGYHDVA+TFLL
Sbjct: 95  YNQVVLDVNRSLKRFPPGIPYEQRIALQDQLTVLIMRVICKYPDLRYYQGYHDVAVTFLL 154

Query: 61  VVGEMKAFRILEVLSNDHLSENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLE 113
           V GE  AF +++VLS +H SE M++TMD T   L +++P+VN  + +L  FL+
Sbjct: 155 VAGEEVAFAVMDVLSTNHFSECMQETMDATQKRLLFIWPVVNFENPELFNFLQ 207

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195050778|ref|XP_001992965.1| GH13565 [Drosophila grimshawi] gi|193900024|gb|EDV98890.1| GH13565 [Drosophila grimshawi]

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 74/113 (65%), Positives = 91/113 (80%)

Query: 1   YSQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLL 60
           Y+QVVLDVNRSLKRFPPGIP EQR+ALQDQLT+LIL+VI  YP LRYYQGYHDVA+TFLL
Sbjct: 95  YNQVVLDVNRSLKRFPPGIPYEQRIALQDQLTVLILRVIKKYPNLRYYQGYHDVAVTFLL 154

Query: 61  VVGEMKAFRILEVLSNDHLSENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLE 113
           V GE  AF I+E LS  H SE M++TM+ T   L +++P+V+   S+L +FL+
Sbjct: 155 VAGEEVAFAIMEELSTTHFSECMQETMEATQRRLMFIWPIVHFEHSELFQFLQ 207

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442622255|ref|NP_001260702.1| CG17883, isoform D [Drosophila melanogaster] gi|440214077|gb|AGB93237.1| CG17883, isoform D [Drosophila melanogaster]

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 73/113 (64%), Positives = 91/113 (80%)

Query: 1   YSQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLL 60
           Y+QVVLDVNRSLKRFPPGIP EQR+ALQDQLT+LIL+VI  YP LRYYQGYHDVA+TFLL
Sbjct: 90  YNQVVLDVNRSLKRFPPGIPYEQRIALQDQLTVLILRVIQKYPNLRYYQGYHDVAVTFLL 149

Query: 61  VVGEMKAFRILEVLSNDHLSENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLE 113
           VVGE  AF I+E LS  H SE M++TM+ T   L +++P++   + +L +FL+
Sbjct: 150 VVGEEIAFAIMEQLSTTHFSECMQETMEATQRRLMFIWPIIKFENPELYQFLQ 202

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
FB|FBgn0040005	378	CG17883 [Drosophila melanogast	0.991	0.298	0.539	2.2e-27
MGI|MGI:1914481	402	Tbc1d20 "TBC1 domain family, m	0.991	0.281	0.460	1.1e-23
RGD|1303293	402	Tbc1d20 "TBC1 domain family, m	0.991	0.281	0.451	2.6e-23
UNIPROTKB|Q96BZ9	403	TBC1D20 "TBC1 domain family me	0.991	0.280	0.442	2.6e-23
UNIPROTKB|Q2T9Q1	403	TBC1D20 "TBC1 domain family me	0.991	0.280	0.433	6e-23
ZFIN|ZDB-GENE-050626-61	397	tbc1d20 "TBC1 domain family, m	1.0	0.287	0.421	9.1e-23
UNIPROTKB|F1NEC2	380	TBC1D20 "Uncharacterized prote	0.991	0.297	0.424	1.6e-22
ZFIN|ZDB-GENE-040426-1278	399	zgc:63863 "zgc:63863" [Danio r	1.0	0.285	0.438	2.2e-22
UNIPROTKB|J9P5A7	403	TBC1D20 "Uncharacterized prote	0.991	0.280	0.424	2.4e-22
UNIPROTKB|F1S7J4	281	TBC1D20 "Uncharacterized prote	0.657	0.266	0.402	8e-10

FB|FBgn0040005 CG17883 [Drosophila melanogaster (taxid:7227)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 61/113 (53%), Positives = 77/113 (68%)

Query:     1 YSQVVLDVNRSLKRFPPGIPIEXXXXXXXXXXXXXXKVIHAYPRLRYYQGYHDVAITFLL 60
             Y+QVVLDVNRSLKRFPPGIP E              +VI  YP LRYYQGYHDVA+TFLL
Sbjct:    90 YNQVVLDVNRSLKRFPPGIPYEQRIALQDQLTVLILRVIQKYPNLRYYQGYHDVAVTFLL 149

Query:    61 VVGEMKAFRILEVLSNDHLSENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLE 113
             VVGE  AF I+E LS  H SE M++TM+ T   L +++P++   + +L +FL+
Sbjct:   150 VVGEEIAFAIMEQLSTTHFSECMQETMEATQRRLMFIWPIIKFENPELYQFLQ 202

GO:0032313 "regulation of Rab GTPase activity" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

MGI|MGI:1914481 Tbc1d20 "TBC1 domain family, member 20" [Mus musculus (taxid:10090)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 52/113 (46%), Positives = 73/113 (64%)

Query:     1 YSQVVLDVNRSLKRFPPGIPIEXXXXXXXXXXXXXXKVIHAYPRLRYYQGYHDVAITFLL 60
             Y QV+LDV RSL+RFPPG+P E               V+   P+L YYQGYHD+ +TFLL
Sbjct:    95 YQQVLLDVRRSLRRFPPGMPDEQREGLQEELIDIILLVLDRNPQLHYYQGYHDIVVTFLL 154

Query:    61 VVGEMKAFRILEVLSNDHLSENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLE 113
             VVGE  A  ++E LS  HL + M  TMD T ++LNY+ P++++ S +L +F++
Sbjct:   155 VVGERLATSLVEKLSTHHLRDFMDPTMDNTKHILNYLMPIIDQVSPELHDFMQ 207

GO:0003674 "molecular_function" evidence=ND

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005622 "intracellular" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0032313 "regulation of Rab GTPase activity" evidence=IEA

RGD|1303293 Tbc1d20 "TBC1 domain family, member 20" [Rattus norvegicus (taxid:10116)]

 Score = 269 (99.8 bits), Expect = 2.6e-23, P = 2.6e-23
 Identities = 51/113 (45%), Positives = 73/113 (64%)

Query:     1 YSQVVLDVNRSLKRFPPGIPIEXXXXXXXXXXXXXXKVIHAYPRLRYYQGYHDVAITFLL 60
             Y QV+LDV RSL+RFPPG+P E               V+   P+L YYQGYHD+ +TFLL
Sbjct:    95 YQQVLLDVRRSLRRFPPGMPDEQREGLQEELIDIILLVLDRNPQLHYYQGYHDIVVTFLL 154

Query:    61 VVGEMKAFRILEVLSNDHLSENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLE 113
             VVGE  A  ++E LS  HL + M  TMD T ++LNY+ P++++ + +L +F++
Sbjct:   155 VVGERLATSLVEKLSTHHLRDFMDPTMDNTKHILNYLMPIIDQVNPELHDFMQ 207

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|Q96BZ9 TBC1D20 "TBC1 domain family member 20" [Homo sapiens (taxid:9606)]

 Score = 269 (99.8 bits), Expect = 2.6e-23, P = 2.6e-23
 Identities = 50/113 (44%), Positives = 73/113 (64%)

Query:     1 YSQVVLDVNRSLKRFPPGIPIEXXXXXXXXXXXXXXKVIHAYPRLRYYQGYHDVAITFLL 60
             Y QV+LDV RSL+RFPPG+P E               ++   P+L YYQGYHD+ +TFLL
Sbjct:    96 YQQVLLDVRRSLRRFPPGMPEEQREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLL 155

Query:    61 VVGEMKAFRILEVLSNDHLSENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLE 113
             VVGE  A  ++E LS  HL + M  TMD T ++LNY+ P++++ + +L +F++
Sbjct:   156 VVGERLATSLVEKLSTHHLRDFMDPTMDNTKHILNYLMPIIDQVNPELHDFMQ 208

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

UNIPROTKB|Q2T9Q1 TBC1D20 "TBC1 domain family member 20" [Bos taurus (taxid:9913)]

 Score = 266 (98.7 bits), Expect = 6.0e-23, P = 6.0e-23
 Identities = 49/113 (43%), Positives = 73/113 (64%)

Query:     1 YSQVVLDVNRSLKRFPPGIPIEXXXXXXXXXXXXXXKVIHAYPRLRYYQGYHDVAITFLL 60
             Y QV+LDV RSL+RFPPG+P E               ++   P+L YYQGYHD+ +TFLL
Sbjct:    96 YQQVLLDVRRSLRRFPPGMPEEQREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLL 155

Query:    61 VVGEMKAFRILEVLSNDHLSENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLE 113
             V+GE  A  ++E LS  HL + M  TMD T ++LNY+ P++++ + +L +F++
Sbjct:   156 VLGERLATSLVEKLSTHHLRDFMDPTMDNTKHILNYLMPIIDQVNPELHDFMQ 208

GO:0016021 "integral to membrane" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

ZFIN|ZDB-GENE-050626-61 tbc1d20 "TBC1 domain family, member 20" [Danio rerio (taxid:7955)]

 Score = 264 (98.0 bits), Expect = 9.1e-23, P = 9.1e-23
 Identities = 48/114 (42%), Positives = 75/114 (65%)

Query:     1 YSQVVLDVNRSLKRFPPGIPIEXXXXXXXXXXXXXXKVIHAYPRLRYYQGYHDVAITFLL 60
             ++QV+LDV RSL+RFPPG+P E              +V+   P+L YYQGYHD+ +TFLL
Sbjct:    93 FNQVLLDVQRSLRRFPPGMPDEQREGLQEEPTDIILRVLVKNPQLHYYQGYHDIVVTFLL 152

Query:    61 VVGEMKAFRILEVLSNDHLSENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLER 114
             V+GE  A  ++E LS  HL + M  TMD T ++LNY+ P++ + + ++ +F+++
Sbjct:   153 VLGERLATALVEKLSTHHLRDFMDPTMDNTKHILNYLMPIIERVNPEVFDFMQQ 206

GO:0005622 "intracellular" evidence=IEA

GO:0032313 "regulation of Rab GTPase activity" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

UNIPROTKB|F1NEC2 TBC1D20 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 48/113 (42%), Positives = 73/113 (64%)

Query:     1 YSQVVLDVNRSLKRFPPGIPIEXXXXXXXXXXXXXXKVIHAYPRLRYYQGYHDVAITFLL 60
             Y QV+LDV RSL+RFPPG+P +               V+   P+L YYQGYHD+ +TFLL
Sbjct:    74 YQQVLLDVRRSLRRFPPGMPDDQREGLQEELIDIILHVLKRNPQLHYYQGYHDIVVTFLL 133

Query:    61 VVGEMKAFRILEVLSNDHLSENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLE 113
             VVG+  A  ++E LS  HL + M  TMD T ++LNY+ P++++ + ++ +F++
Sbjct:   134 VVGDRLATALVEKLSTHHLRDFMDPTMDNTKHILNYLMPIIDQVNPEVHDFMQ 186

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

ZFIN|ZDB-GENE-040426-1278 zgc:63863 "zgc:63863" [Danio rerio (taxid:7955)]

 Score = 261 (96.9 bits), Expect = 2.2e-22, P = 2.2e-22
 Identities = 50/114 (43%), Positives = 70/114 (61%)

Query:     1 YSQVVLDVNRSLKRFPPGIPIEXXXXXXXXXXXXXXKVIHAYPRLRYYQGYHDVAITFLL 60
             Y QVVLDV RS++RFP G+ ++               V+   P+L YYQGYHD+ +TFLL
Sbjct:    94 YRQVVLDVRRSMRRFPKGMRVDEREVLQEQLIDIILDVLRRNPQLHYYQGYHDIVVTFLL 153

Query:    61 VVGEMKAFRILEVLSNDHLSENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLER 114
             V+GE     I+E LSN HL + M  TMD T ++LNY+ PL+ +   +L +F+ R
Sbjct:   154 VLGERMTIAIMEKLSNHHLRDFMDPTMDSTKHILNYLMPLLERVDRELHDFMIR 207

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0032313 "regulation of Rab GTPase activity" evidence=IEA

UNIPROTKB|J9P5A7 TBC1D20 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 261 (96.9 bits), Expect = 2.4e-22, P = 2.4e-22
 Identities = 48/113 (42%), Positives = 72/113 (63%)

Query:     1 YSQVVLDVNRSLKRFPPGIPIEXXXXXXXXXXXXXXKVIHAYPRLRYYQGYHDVAITFLL 60
             Y QV+LDV RSL+RFPPG+P +               ++   P+L YYQGYHD+ +TFLL
Sbjct:    96 YQQVLLDVRRSLRRFPPGMPEKQREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLL 155

Query:    61 VVGEMKAFRILEVLSNDHLSENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLE 113
             VVGE     ++E LS  HL + M  TMD T ++LNY+ P++++ + +L +F++
Sbjct:   156 VVGERLTTSLVEKLSTHHLRDFMDPTMDNTKHILNYLMPIIDQVNPELHDFMQ 208

GO:0005622 "intracellular" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

UNIPROTKB|F1S7J4 TBC1D20 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 145 (56.1 bits), Expect = 8.0e-10, P = 8.0e-10
 Identities = 31/77 (40%), Positives = 49/77 (63%)

Query:    38 VIHAYPRLRYYQGY-HDVAITFLLVVGEMKAFRILEVLSNDHLSENMRDTMDETSYVLNY 96
             ++  +P LRYYQGY   V  TFLL VG+  A    + LS  HL + M  TMD T+ +LNY
Sbjct:     9 ILERHPHLRYYQGYLRRVVSTFLLSVGDTLATSPGK-LSTHHLMDFMDPTMDNTTLILNY 67

Query:    97 MFPLVNKRSSDLCEFLE 113
             + P++++ + +L +F++
Sbjct:    68 LMPIIDQVNPELHDFMQ 84

GO:0005622 "intracellular" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q96BZ9	TBC20_HUMAN	No assigned EC number	0.5044	0.9912	0.2803	yes	N/A
Q9D9I4	TBC20_MOUSE	No assigned EC number	0.5221	0.9912	0.2810	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	114
pfam00566	206	pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain	3e-09

>gnl|CDD|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain

 Score = 51.6 bits (124), Expect = 3e-09
 Identities = 27/115 (23%), Positives = 43/115 (37%), Gaps = 5/115 (4%)

Query: 1   YSQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLL 60
             Q+  DV R+     P     +    Q QL  ++       P + Y QG + +A   LL
Sbjct: 39  EEQIEKDVPRTF----PHHFFFKNGEGQQQLRRILKAYSIYNPDVGYCQGMNFIAAPLLL 94

Query: 61  VVG-EMKAFRILEVLSNDHLSENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLER 114
           VV  E +AF     L    L +    +       L     L+ K   +L + L++
Sbjct: 95  VVLDEEEAFWCFVSLLEYLLRDFFLPSFPGLQRDLYVFEELLKKHDPELYKHLQK 149

Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, implies that these domains are GTPase activator proteins of Rab-like small GTPases. Length = 206

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	114
KOG2595|consensus	395		100.0
KOG2058|consensus	436		99.98
smart00164	199	TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable R	99.96
COG5210	496	GTPase-activating protein [General function predic	99.94
PF00566	214	RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR00	99.92
KOG4347|consensus	671		99.85
KOG4567|consensus	370		99.81
KOG2221|consensus	267		99.8
KOG2222|consensus	848		99.79
KOG1092|consensus	484		99.74
KOG2223|consensus	586		99.72
KOG1093|consensus	725		99.69
KOG4436|consensus	948		99.67
KOG2197|consensus	488		99.66
KOG1102|consensus	397		99.63
KOG2224|consensus	781		99.34
KOG1091|consensus	625		99.21
KOG4436|consensus	948		98.47
KOG1648|consensus	813		91.47

>KOG2595|consensus

Probab=100.00  E-value=4e-33  Score=214.47  Aligned_cols=114  Identities=54%  Similarity=0.892  Sum_probs=111.6

Q ss_pred             CccccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHHHHHhChhhHHHHHHHHHHhhhh
Q psy8434           1 YSQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVVGEMKAFRILEVLSNDHLS   80 (114)
Q Consensus         1 ~~QI~~Dv~Rt~~~~~~~~~~~~~~~~~~~L~~iL~a~~~~~p~l~Y~QGm~dIaa~lLlv~~E~~af~~~~~L~~~~l~   80 (114)
                      |.||.+||+|||..||.++++++|..+|++|..+|..++.+||.++||||+||||.+||+|++|.+|+.+++.|+..++|
T Consensus        97 ~nQV~LDv~RSl~rfppg~p~~~R~~Lq~qL~~LI~rVl~~yP~L~YYQGyHDI~~tfLLv~gE~~Al~l~E~L~~~~lr  176 (395)
T KOG2595|consen   97 YNQVILDVERSLGRFPPGIPKELRLQLQKQLTELILRVLRKYPTLNYYQGYHDIVVTFLLVVGELEALSLMEELSTLHLR  176 (395)
T ss_pred             cceEEEehhhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCcchhcchhHHHHHHHHhhhhHhhhHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcChHHHHHHHHHHHHHHHhhCHHHHHHhhC
Q psy8434          81 ENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLER  114 (114)
Q Consensus        81 d~~~~~l~~~~~~l~~l~~ll~~~dp~L~~~L~~  114 (114)
                      |||.++|+++.+.++++.++++++||+||++|++
T Consensus       177 dfM~~Tld~t~~qL~~i~~iIk~~nP~Ly~~l~~  210 (395)
T KOG2595|consen  177 DFMLPTLDFTVRQLRLISPIIKEVNPELYQFLQS  210 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHh
Confidence            9999999999999999999999999999999874

>KOG2058|consensus

Probab=99.98  E-value=7.3e-33  Score=220.10  Aligned_cols=111  Identities=21%  Similarity=0.225  Sum_probs=102.5

Q ss_pred             ccccccccccCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHHHHHhC-hhhHHHHHHHHHHhhh
Q psy8434           2 SQVVLDVNRSLKRF-PPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVVG-EMKAFRILEVLSNDHL   79 (114)
Q Consensus         2 ~QI~~Dv~Rt~~~~-~~~~~~~~~~~~~~~L~~iL~a~~~~~p~l~Y~QGm~dIaa~lLlv~~-E~~af~~~~~L~~~~l   79 (114)
                      +||+.|+.||||.. +.+..++  ..++++|.|||.||+++||.+|||||||++||++|++|+ ||+|||+|..++.+++
T Consensus       198 ~qI~~DL~RTfP~n~~~~~~~~--~~~~~~LrRvL~Aya~hNp~vGYCQGmNflAallLL~~~~EE~AFW~Lv~iie~~l  275 (436)
T KOG2058|consen  198 KQIKLDLPRTFPDNFKGFDSED--SDGRQTLRRVLLAYARHNPSVGYCQGMNFLAALLLLLMPSEEDAFWMLVALIENYL  275 (436)
T ss_pred             HHHHhccccccCCCcccCCCCC--chHHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHhcCChHHHHHHHHHHHHHhc
Confidence            69999999999987 5554433  335899999999999999999999999999999999998 9999999999999999


Q ss_pred             hhhhhcChHHHHHHHHHHHHHHHhhCHHHHHHhhC
Q psy8434          80 SENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLER  114 (114)
Q Consensus        80 ~d~~~~~l~~~~~~l~~l~~ll~~~dp~L~~~L~~  114 (114)
                      ++||+++|.|++.++.++..||+..+|+|+.||+.
T Consensus       276 p~Yyt~nL~g~qvDQ~VL~~llre~lPkl~~~l~~  310 (436)
T KOG2058|consen  276 PRYYTPNLIGSQVDQKVLRELLREKLPKLSLHLEG  310 (436)
T ss_pred             hhhcCchhhhhhccHHHHHHHHHHHCHHHHHhhhh
Confidence            99999999999999999999999999999999863

>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p

Probab=99.96  E-value=9.8e-30  Score=182.38  Aligned_cols=110  Identities=23%  Similarity=0.172  Sum_probs=100.4

Q ss_pred             ccccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHHHHHhC-hhhHHHHHHHHHHhhhh
Q psy8434           2 SQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVVG-EMKAFRILEVLSNDHLS   80 (114)
Q Consensus         2 ~QI~~Dv~Rt~~~~~~~~~~~~~~~~~~~L~~iL~a~~~~~p~l~Y~QGm~dIaa~lLlv~~-E~~af~~~~~L~~~~l~   80 (114)
                      +||++||.||++..+.+...  .+..++.|.|||.+|+..||++|||||||+|||+++++++ |++|||++..++..+.+
T Consensus        48 ~~I~~Dv~Rt~~~~~~f~~~--~~~~~~~L~~IL~~~~~~~p~~gY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~~  125 (199)
T smart00164       48 HQIEKDLRRTFPEHSFFQDK--EGPGQESLRRVLKAYALYNPEVGYCQGMNFLAAPLLLVMPDEEDAFWCLVKLMERYGP  125 (199)
T ss_pred             HHHhcccCCCCCCchhhcCC--CcccHHHHHHHHHHHHHHCCCCceeccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCc
Confidence            68999999999887765331  2358899999999999999999999999999999999994 99999999999998888


Q ss_pred             hhhhcChHHHHHHHHHHHHHHHhhCHHHHHHhh
Q psy8434          81 ENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLE  113 (114)
Q Consensus        81 d~~~~~l~~~~~~l~~l~~ll~~~dp~L~~~L~  113 (114)
                      .+|.++++++...+.++..+++..||+|++||+
T Consensus       126 ~~~~~~~~~~~~~~~~~~~ll~~~~p~l~~~l~  158 (199)
T smart00164      126 NFYLPDMSGLQLDLLQLDRLVKEYDPDLYKHLK  158 (199)
T ss_pred             ccCCCChHHHHHHHHHHHHHHHHHCHHHHHHHH
Confidence            888999999999999999999999999999996

Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.

>COG5210 GTPase-activating protein [General function prediction only]

Probab=99.94  E-value=1.1e-27  Score=193.85  Aligned_cols=111  Identities=23%  Similarity=0.204  Sum_probs=99.8

Q ss_pred             ccccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHHHHHhC-hhhHHHHHHHHHH-hhh
Q psy8434           2 SQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVVG-EMKAFRILEVLSN-DHL   79 (114)
Q Consensus         2 ~QI~~Dv~Rt~~~~~~~~~~~~~~~~~~~L~~iL~a~~~~~p~l~Y~QGm~dIaa~lLlv~~-E~~af~~~~~L~~-~~l   79 (114)
                      +||++||.||++.++.+..+...  ..+.|.|||.+|+.+||++|||||||+|||+||++|. |++||||+.+|+. .++
T Consensus       258 ~~i~~Dl~rt~~~~~~f~~~~s~--~~~~L~rvL~ays~~~p~vgY~QgMn~l~a~ll~~~~~Ee~AF~~l~~L~~~~~l  335 (496)
T COG5210         258 SQIEKDLSRTFPDNSLFQTEISI--RAENLRRVLKAYSLYNPEVGYVQGMNFLAAPLLLVLESEEQAFWCLVKLLKNYGL  335 (496)
T ss_pred             HHHHccccccccccccccCcccc--cHHHHHHHHHHHHhcCCCCceeccHHHHHHHHHHHhhhhHHHHHHHHHHHHhccc
Confidence            68999999999988766443211  1134999999999999999999999999999999999 9999999999999 579


Q ss_pred             hhhhhcChHHHHHHHHHHHHHHHhhCHHHHHHhhC
Q psy8434          80 SENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLER  114 (114)
Q Consensus        80 ~d~~~~~l~~~~~~l~~l~~ll~~~dp~L~~~L~~  114 (114)
                      +++|.++++|+..++..+..+++..+|++|+||++
T Consensus       336 ~~~~~~~~~G~~~~~~~l~~~v~~~~p~l~~hl~~  370 (496)
T COG5210         336 PGYFLKNLSGLHRDLKVLDDLVEELDPELYEHLLR  370 (496)
T ss_pred             hhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999974

>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases []

Probab=99.92  E-value=5e-25  Score=158.27  Aligned_cols=109  Identities=25%  Similarity=0.296  Sum_probs=97.2

Q ss_pred             ccccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHHHHH-hChhhHHHHHHHHHHhhhh
Q psy8434           2 SQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLV-VGEMKAFRILEVLSNDHLS   80 (114)
Q Consensus         2 ~QI~~Dv~Rt~~~~~~~~~~~~~~~~~~~L~~iL~a~~~~~p~l~Y~QGm~dIaa~lLlv-~~E~~af~~~~~L~~~~l~   80 (114)
                      +||.+||.||+++.+.+.    .+..++.|.|||.+|+..||++||+||||+||++++++ .+|++||||++.++...++
T Consensus        48 ~~I~~Dv~rt~~~~~~~~----~~~~~~~l~~iL~~~~~~~~~~~Y~qG~~~i~~~ll~~~~~e~~af~~~~~l~~~~~~  123 (214)
T PF00566_consen   48 EQIDKDVNRTFPNSFLFK----NEQNQKSLERILSAYAKYNPDVGYCQGMNDIAAPLLLVFLDEEEAFWCFVQLLNYYLP  123 (214)
T ss_dssp             HHHHHHHCTSSTSCCCST----THHHHHHHHHHHHHHHHHTTTTSS-TTHHHHHHHHHHTCSHHHHHHHHHHHHHTHHGG
T ss_pred             HHHHHhhhhhcccchhhh----hcchHHHHHHHHHHhccccccccccchhhhhhhhhhhhcccccchhccccchhccccc
Confidence            589999999998444443    34588999999999999999999999999999999955 5789999999999988999


Q ss_pred             hhhhcChHHHHHHHHHHHHHHHhhCHHHHHHhhC
Q psy8434          81 ENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLER  114 (114)
Q Consensus        81 d~~~~~l~~~~~~l~~l~~ll~~~dp~L~~~L~~  114 (114)
                      +++.++..++...+..+..+++..+|++++||++
T Consensus       124 ~~~~~~~~~~~~~~~~~~~ll~~~~P~l~~~l~~  157 (214)
T PF00566_consen  124 DFFQPNFKGLQKILKIFEQLLKKHDPELYNHLKQ  157 (214)
T ss_dssp             GGTSTTHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             ccccccccccchhhhhHHHHHHhhhhhhhhhhhh
Confidence            9999999999999999999999999999999863

; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.

>KOG4347|consensus

Probab=99.85  E-value=1.3e-21  Score=160.15  Aligned_cols=109  Identities=22%  Similarity=0.192  Sum_probs=102.6

Q ss_pred             CccccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHHHHHhChhhHHHHHHHHHHhhhh
Q psy8434           1 YSQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVVGEMKAFRILEVLSNDHLS   80 (114)
Q Consensus         1 ~~QI~~Dv~Rt~~~~~~~~~~~~~~~~~~~L~~iL~a~~~~~p~l~Y~QGm~dIaa~lLlv~~E~~af~~~~~L~~~~l~   80 (114)
                      ++.|++|.+||+|.+|.+.+++    +-..|.|||.||+++||++||||-||-|++.+++++.||.|||++.++++.+++
T Consensus       244 ~eEIE~Dl~rsLpEhpA~Q~e~----gi~aLR~vL~Aya~~Np~vGYcQaMNIV~s~lll~~~EEeafwll~~lce~~ip  319 (671)
T KOG4347|consen  244 TEEIEPDLGRSLPEHPAFQSEP----GIAALRRVLTAYAWSNPEVGYCQAMNIVGSELLLFCKEEEAFWLLSKLCEIYIP  319 (671)
T ss_pred             cccccCCCCCCCCcchhhhCCC----chhhHHHHHHhhhccCCchhHHHHHHHHHHhhhhhhccchHHHHHHHHHHHhcc
Confidence            3679999999999999885554    567788899999999999999999999999999999999999999999999999


Q ss_pred             hhhhcChHHHHHHHHHHHHHHHhhCHHHHHHhh
Q psy8434          81 ENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLE  113 (114)
Q Consensus        81 d~~~~~l~~~~~~l~~l~~ll~~~dp~L~~~L~  113 (114)
                      +|+..++-|+.-++.+...|++...|.+++|+.
T Consensus       320 ~yys~~vvGtliDQ~vfe~lve~~lP~l~~~~~  352 (671)
T KOG4347|consen  320 DYYSKTVVGTLIDQSVFEELVEDTLPVLGEHLA  352 (671)
T ss_pred             cccchhhhhhHHHHHHHHHHHHHhhhHHHHHhh
Confidence            999999999999999999999999999999986

>KOG4567|consensus

Probab=99.81  E-value=2.2e-20  Score=143.08  Aligned_cols=112  Identities=19%  Similarity=0.261  Sum_probs=89.4

Q ss_pred             ccccccccccCCCCCCCC-----------CHHH------------HHHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHH
Q psy8434           2 SQVVLDVNRSLKRFPPGI-----------PIEQ------------RLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITF   58 (114)
Q Consensus         2 ~QI~~Dv~Rt~~~~~~~~-----------~~~~------------~~~~~~~L~~iL~a~~~~~p~l~Y~QGm~dIaa~l   58 (114)
                      .||++||.||.|..+.+.           ....            .+..+....|||..||+.||+++|+||||.|+|++
T Consensus       122 ~QIdrDvrr~~pdi~ff~~~~~~p~~~~~~~~~~i~~~q~~~~n~~gl~~~~~erilfiyAKLNpGi~YVQGMNEIlaPi  201 (370)
T KOG4567|consen  122 LQIDRDVRRTHPDISFFQLASSYPCRQGMDSRRRINASQEAGRNRLGLTRFAAERILFIYAKLNPGIGYVQGMNEILAPI  201 (370)
T ss_pred             HHHHHHHHHhCcchHhhhhccccccccchhhHhhhhhhhHhhhcccchhhhHHHHHHHHHhhcCCcchHHhhhHHHhhhh
Confidence            599999999988532210           0000            02233456789999999999999999999999999


Q ss_pred             HHHh-----------ChhhHHHHHHHHHHhhhhhhhhcChHH----HHHHHHHHHHHHHhhCHHHHHHhhC
Q psy8434          59 LLVV-----------GEMKAFRILEVLSNDHLSENMRDTMDE----TSYVLNYMFPLVNKRSSDLCEFLER  114 (114)
Q Consensus        59 Llv~-----------~E~~af~~~~~L~~~~l~d~~~~~l~~----~~~~l~~l~~ll~~~dp~L~~~L~~  114 (114)
                      .+|+           -|++||.||..||- -+||+|.++++.    +...+.-+..+|+..|-+||+||++
T Consensus       202 YYVfa~Dpd~e~~~~aEaDaFFCF~~LMs-eirDnf~k~LDdS~~GI~~~Msr~~~~lk~~D~EL~~~L~~  271 (370)
T KOG4567|consen  202 YYVFANDPDEENRAYAEADAFFCFTQLMS-EIRDNFIKTLDDSVGGIHFLMSRLSELLKKHDEELWRHLEE  271 (370)
T ss_pred             heeeccCCchhhHHhhhhhHHHHHHHHHH-HHHHHHHHhccccccchHHHHHHHHHHHHHhhHHHHHHHHh
Confidence            9998           26899999999975 689999998874    4466788999999999999999974

>KOG2221|consensus

Probab=99.80  E-value=4.7e-20  Score=135.67  Aligned_cols=110  Identities=14%  Similarity=0.066  Sum_probs=102.8

Q ss_pred             ccccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHHHHHhChhhHHHHHHHHHHhhhhh
Q psy8434           2 SQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVVGEMKAFRILEVLSNDHLSE   81 (114)
Q Consensus         2 ~QI~~Dv~Rt~~~~~~~~~~~~~~~~~~~L~~iL~a~~~~~p~l~Y~QGm~dIaa~lLlv~~E~~af~~~~~L~~~~l~d   81 (114)
                      +-|++|.+|-|+.+..+-+.  .+.+++.|+|+|.||...+|+.|||||-..||+++|+.+++++||||++..+..++++
T Consensus       144 e~i~kdl~rqfp~hemf~s~--~k~gkqelfr~lka~ti~~pe~g~cq~qapiaa~llmhmp~rdaf~~~vqicekylqg  221 (267)
T KOG2221|consen  144 EGIHKDLHRQFPFHEMFGSS--GKTGKQELFRVLKAYTIYKPEEGYCQAQAPIAAVLLMHMPARDAFWCFVQICEKYLQG  221 (267)
T ss_pred             hhhccccccCCCcccccccc--cccchHHHHHHHHHHHHhCchhhhhhhhchHHHHHHhcccHHHHHHHHHHHHHHHccc
Confidence            45899999999988777554  4567999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcChHHHHHHHHHHHHHHHhhCHHHHHHhh
Q psy8434          82 NMRDTMDETSYVLNYMFPLVNKRSSDLCEFLE  113 (114)
Q Consensus        82 ~~~~~l~~~~~~l~~l~~ll~~~dp~L~~~L~  113 (114)
                      ||.++++.++.+-.+|..|++..+|-.+.|+.
T Consensus       222 y~~sgleaiq~dg~il~~Llkk~~~p~~rH~~  253 (267)
T KOG2221|consen  222 YYSSGLEAIQNDGGILEGLLKKASPPPYRHLG  253 (267)
T ss_pred             ccccchhhhhcccHHHHHHHHhcCCCCCcccc
Confidence            99999999999999999999999999999885

>KOG2222|consensus

Probab=99.79  E-value=7.8e-20  Score=146.90  Aligned_cols=111  Identities=22%  Similarity=0.205  Sum_probs=99.3

Q ss_pred             ccccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHHHHHhChhhHHHHHHHHHHhhhh-
Q psy8434           2 SQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVVGEMKAFRILEVLSNDHLS-   80 (114)
Q Consensus         2 ~QI~~Dv~Rt~~~~~~~~~~~~~~~~~~~L~~iL~a~~~~~p~l~Y~QGm~dIaa~lLlv~~E~~af~~~~~L~~~~l~-   80 (114)
                      .||++|+-|++|+..-+..  ..+.+-.+|.|||.++++..|++||||||-.|+|.+|++|.||.|||+|..++...+| 
T Consensus       213 ~qiekdllr~lpnn~cf~k--~n~~gi~~lrrilk~ia~ifpdigycqg~gviva~lllf~~ee~afwmmaaiiedilp~  290 (848)
T KOG2222|consen  213 KQIEKDLLRILPNNACFSK--KNGEGIEALRRILKCIAFIFPDIGYCQGMGVIVACLLLFCEEENAFWMMAAIIEDILPA  290 (848)
T ss_pred             HHHHHHHHHhCCCcceeeC--CCCcchHHHHHHHhhheeecCCcccccCccHHHHHHHHHhcchhHHHHHHHHHHHhcCc
Confidence            4999999999987654433  2345778899999999999999999999999999999999999999999999998775 


Q ss_pred             hhhhcChHHHHHHHHHHHHHHHhhCHHHHHHhhC
Q psy8434          81 ENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLER  114 (114)
Q Consensus        81 d~~~~~l~~~~~~l~~l~~ll~~~dp~L~~~L~~  114 (114)
                      .||++++-|++.+.++.+.|++-.-|+|-+.|++
T Consensus       291 nfysqtllgiqaderv~~~li~~~l~~ldeal~~  324 (848)
T KOG2222|consen  291 NFYSQTLLGIQADERVMHHLIACHLPDLDEALED  324 (848)
T ss_pred             hhhhhhHhccchhHHHHHHHHHhccCchhHHHHh
Confidence            8889999999999999999999999999887763

>KOG1092|consensus

Probab=99.74  E-value=6.2e-18  Score=133.66  Aligned_cols=109  Identities=21%  Similarity=0.287  Sum_probs=98.5

Q ss_pred             CccccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHHHHHh------C-----------
Q psy8434           1 YSQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVV------G-----------   63 (114)
Q Consensus         1 ~~QI~~Dv~Rt~~~~~~~~~~~~~~~~~~~L~~iL~a~~~~~p~l~Y~QGm~dIaa~lLlv~------~-----------   63 (114)
                      |+||..|++|+.++-+.+    +....|+.|.|||..++.+||..||.||.||.+.+++.++      +           
T Consensus       244 ~rQI~id~prm~p~~~l~----q~~~vq~~lerIl~iwairhpAsGyvqgindlvtpf~vvfl~e~l~~~~~~~~~d~~~  319 (484)
T KOG1092|consen  244 WRQIPIDIPRMNPHIPLF----QQKIVQEMLERILYIWAIRHPASGYVQGINDLVTPFFVVFLSEYLGPIMDVESIDMSL  319 (484)
T ss_pred             ccccccCCCCCCccccch----hhHHHHHHHHHHHHHHHHhcccccccccceeeechhhhhhhHhhcCccccccccchhh
Confidence            689999999999887665    4456899999999999999999999999999999998875      1           


Q ss_pred             ---------hhhHHHHHHHHHHhhhhhhhhcChHHHHHHHHHHHHHHHhhCHHHHHHhhC
Q psy8434          64 ---------EMKAFRILEVLSNDHLSENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLER  114 (114)
Q Consensus        64 ---------E~~af~~~~~L~~~~l~d~~~~~l~~~~~~l~~l~~ll~~~dp~L~~~L~~  114 (114)
                               |++||||+.+|.. .+.|.|.-.-+|+++..+-|..|++++|++|++||+.
T Consensus       320 l~~E~~~~iEADsyWClskLLD-~IQDNYtfaQpGIq~kV~~L~eLv~RID~~~hkHlq~  378 (484)
T KOG1092|consen  320 LPAENAEDIEADAYWCLSKLLD-GIQDNYTFAQPGIQRKVKNLKELVQRIDEPLHKHLQE  378 (484)
T ss_pred             ccHHHHhhhhhhHHHHHHHHHH-HhhhhhhhcChhHHHHHHHHHHHHHHhcHHHHHHHHH
Confidence                     4689999999975 6899999999999999999999999999999999974

>KOG2223|consensus

Probab=99.72  E-value=1.1e-17  Score=133.02  Aligned_cols=110  Identities=17%  Similarity=0.173  Sum_probs=99.0

Q ss_pred             ccccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHHHHHhChhhHHHHHHHHHHh-hhh
Q psy8434           2 SQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVVGEMKAFRILEVLSND-HLS   80 (114)
Q Consensus         2 ~QI~~Dv~Rt~~~~~~~~~~~~~~~~~~~L~~iL~a~~~~~p~l~Y~QGm~dIaa~lLlv~~E~~af~~~~~L~~~-~l~   80 (114)
                      .+|++|+.||||++..|.   +.+..++-|..||-||..+.|++||+|||.+|||++|+-|++..||.+|..|.+. ...
T Consensus       357 ~~i~LDisrTfpsl~iFq---k~GPy~d~L~~lL~AYt~yRpDvgYVqgmSFIaAvLllnmd~~~AFiafANLLdkp~q~  433 (586)
T KOG2223|consen  357 ELIKLDISRTFPSLSIFQ---KGGPYHDDLHSLLGAYTCYRPDVGYVQGMSFIAAVLLLNMDLADAFIAFANLLDKPCQQ  433 (586)
T ss_pred             hheeechhccCcceeeec---cCCchHHHHHHHhhhheeecCccccccchHHHHHHHHHcCCcHHHHHHHHHHhccHHHH
Confidence            479999999999877663   3467889999999999999999999999999999999999999999999999985 567


Q ss_pred             hhhhcChHHHHHHHHHHHHHHHhhCHHHHHHhhC
Q psy8434          81 ENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLER  114 (114)
Q Consensus        81 d~~~~~l~~~~~~l~~l~~ll~~~dp~L~~~L~~  114 (114)
                      .||.-+-+.......-+...+++-.|+|+.||.+
T Consensus       434 Aff~~d~s~m~~yf~tfe~~leenlp~L~~Hl~k  467 (586)
T KOG2223|consen  434 AFFRVDHSSMLSYFATFEVFLEENLPKLFTHLKK  467 (586)
T ss_pred             HHHhcCcHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence            8998888888888889999999999999999864

>KOG1093|consensus

Probab=99.69  E-value=9.9e-17  Score=130.78  Aligned_cols=108  Identities=17%  Similarity=0.175  Sum_probs=96.9

Q ss_pred             ccccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHHHHHh--ChhhHHHHHHHHHHhhh
Q psy8434           2 SQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVV--GEMKAFRILEVLSNDHL   79 (114)
Q Consensus         2 ~QI~~Dv~Rt~~~~~~~~~~~~~~~~~~~L~~iL~a~~~~~p~l~Y~QGm~dIaa~lLlv~--~E~~af~~~~~L~~~~l   79 (114)
                      +||++||+|++.+...-++.    .+++.|.|+|.||+..+|...|+||...+|++||+..  +|..||.|+..+..+++
T Consensus       392 rqievdiprchQyd~~lsSp----~~~r~lrRvLkawv~~s~~fvywqgldsLa~PFl~ln~Nne~laF~~~~~fi~kyc  467 (725)
T KOG1093|consen  392 RQIEVDIPRCHQYDELLSSP----KGHRKLRRVLKAWVTWSPIFVYWQGLDSLAAPFLYLNFNNELLAFACIATFIPKYC  467 (725)
T ss_pred             hhhhcccchhhhcccccCCH----HHHHHHHHHHHHHHhcCcceeecCCChhhhhhHHHHhcCchHHHHHHHHHHHHHHH
Confidence            69999999999865444443    3888999999999999999999999999999999875  69999999999999999


Q ss_pred             hhhhhcChHHH-HHHHHHHHHHHHhhCHHHHHHhh
Q psy8434          80 SENMRDTMDET-SYVLNYMFPLVNKRSSDLCEFLE  113 (114)
Q Consensus        80 ~d~~~~~l~~~-~~~l~~l~~ll~~~dp~L~~~L~  113 (114)
                      ..||.++.+.+ ++.+.++..+++..||+|++||.
T Consensus       468 q~fflkdns~vikeyLs~f~~l~AfhDpeL~qHl~  502 (725)
T KOG1093|consen  468 QHFFLKDNSNVIKEYLSMFSQLLAFHDPELLQHLI  502 (725)
T ss_pred             HHHHhhcCchhHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            99999977766 59999999999999999999985

>KOG4436|consensus

Probab=99.67  E-value=1.1e-16  Score=133.93  Aligned_cols=110  Identities=25%  Similarity=0.281  Sum_probs=102.0

Q ss_pred             ccccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHHHHHhChhhHHHHHHHHHHh-hhh
Q psy8434           2 SQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVVGEMKAFRILEVLSND-HLS   80 (114)
Q Consensus         2 ~QI~~Dv~Rt~~~~~~~~~~~~~~~~~~~L~~iL~a~~~~~p~l~Y~QGm~dIaa~lLlv~~E~~af~~~~~L~~~-~l~   80 (114)
                      +.|..|.-||||++|.+.  .+.+.+|..|.|+|.||.-.+|++|||||..+||+++|+.|+|+.||.++.-||.. .+|
T Consensus       623 hAi~idlgrtfp~h~~~~--~qlg~gqlsl~n~Lkayslld~e~gycqg~~fv~gvlllh~~e~~afellk~LM~~r~~r  700 (948)
T KOG4436|consen  623 HAILIDLGRTFPTHPYFS--DQLGLGQLSLFNLLKAYSLLDPEVGYCQGLSFVAGVLLLHMSEENAFELLKFLMFDRGMR  700 (948)
T ss_pred             HHHHHhhccccCCCHHHH--hhccccHHHHHHHHHHhcccCccccccCcchhhhhhhHhhcchhhHHHHHHHHHHHHhhH
Confidence            358899999999998763  36788999999999999999999999999999999999999999999999999974 678


Q ss_pred             hhhhcChHHHHHHHHHHHHHHHhhCHHHHHHhh
Q psy8434          81 ENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLE  113 (114)
Q Consensus        81 d~~~~~l~~~~~~l~~l~~ll~~~dp~L~~~L~  113 (114)
                      .=|.|+|...+-.+.-+..+++-+.|+||+||+
T Consensus       701 ~qy~pdm~~lq~qmyqLsrl~hd~hrdlyn~le  733 (948)
T KOG4436|consen  701 KQYRPDMKKLQIQMYQLSRLLHDYHRDLYNHLE  733 (948)
T ss_pred             hhhchHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            889999999999999999999999999999997

>KOG2197|consensus

Probab=99.66  E-value=2.8e-17  Score=133.30  Aligned_cols=110  Identities=23%  Similarity=0.245  Sum_probs=93.5

Q ss_pred             ccccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHHHHHh-ChhhHHHHHHHHHHhhhh
Q psy8434           2 SQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVV-GEMKAFRILEVLSNDHLS   80 (114)
Q Consensus         2 ~QI~~Dv~Rt~~~~~~~~~~~~~~~~~~~L~~iL~a~~~~~p~l~Y~QGm~dIaa~lLlv~-~E~~af~~~~~L~~~~l~   80 (114)
                      ..|.+||.||-..+......+.  .....|.+||.+|...|+++||||||+|.+++++.++ +|.+||||++.++.. ++
T Consensus       239 ~~i~~dv~rtDr~~~~~~~~~n--~~~~~l~~iL~ty~~~~~d~GY~QgmSDllspi~~v~~de~~aFwcFv~fm~~-~~  315 (488)
T KOG2197|consen  239 SRIEKDVGRTDRSLEFYEGEEN--PHLARLVDILLTYAVYDFDLGYCQGMSDLLSPILIVMEDEVEAFWCFVGFMDR-LR  315 (488)
T ss_pred             hhhhhhccccchhhhhhhcccc--cCHHHHHHHHhhcccccCccccccCchhhcCcceeeecCchHHHHHHHHHHHH-Hh
Confidence            3588999999987654422211  2367899999999999999999999999999999998 588999999999875 55


Q ss_pred             hhhhcChHHHHHHHHHHHHHHHhhCHHHHHHhhC
Q psy8434          81 ENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLER  114 (114)
Q Consensus        81 d~~~~~l~~~~~~l~~l~~ll~~~dp~L~~~L~~  114 (114)
                      ..|..+..+...++..+..+++..||.+++||+.
T Consensus       316 ~nF~~d~~~~~~Ql~~~~~li~~~dp~l~~hLe~  349 (488)
T KOG2197|consen  316 HNFRIDQSGMQTQLAQLSSLIQELDPRLYQHLEK  349 (488)
T ss_pred             hcCccccccHHHHhhhhhhhccccCHHHHhhccc
Confidence            6677888899999999999999999999999963

>KOG1102|consensus

Probab=99.63  E-value=6.6e-17  Score=128.38  Aligned_cols=109  Identities=17%  Similarity=0.143  Sum_probs=97.6

Q ss_pred             cccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHHHHHhChhhHHHHHHHHHHhhhhhh
Q psy8434           3 QVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVVGEMKAFRILEVLSNDHLSEN   82 (114)
Q Consensus         3 QI~~Dv~Rt~~~~~~~~~~~~~~~~~~~L~~iL~a~~~~~p~l~Y~QGm~dIaa~lLlv~~E~~af~~~~~L~~~~l~d~   82 (114)
                      || +|+.|||+..-.+  .+..+.+|++|.+|+.+|+..+|++||||||..+|++++++++||+|||++..++...-++.
T Consensus       188 ~~-~d~~Rt~~~~~~f--~~~~~~~q~sl~~vl~a~s~~~~~~gy~q~m~~~a~~ll~~~~ee~af~~lv~l~~~~~~~~  264 (397)
T KOG1102|consen  188 II-RDLSRTFPAHLLF--RKRYGVGQRSLYNVLKAYSLYDPEVGYCQGMSSIAAPLLLYLPEEEAFPLLVKLMKNYGLDL  264 (397)
T ss_pred             HH-hhccCcCcchhhh--hhhcCcccccccccchhhcccCCCcccccchhhHhhhhhccCchhhhhhhhhhhhhccchhc
Confidence            55 9999999865443  22467899999999999999999999999999999999999999999999999998755777


Q ss_pred             hhcChHHHHHHHHHHHHHHHhhCHHHHHHhhC
Q psy8434          83 MRDTMDETSYVLNYMFPLVNKRSSDLCEFLER  114 (114)
Q Consensus        83 ~~~~l~~~~~~l~~l~~ll~~~dp~L~~~L~~  114 (114)
                      +.++++++......+..+++..-|+++.|+.+
T Consensus       265 ~~~~~~~l~~~~~~~~~l~~~~~p~~~~~~~~  296 (397)
T KOG1102|consen  265 LSPGFSGLQRSFRQLQRLLKELIPKLLDHLLP  296 (397)
T ss_pred             ccccCCchhhhHHHHHHHHHHhChhhhhhccc
Confidence            79999999999999999999999999999853

>KOG2224|consensus

Probab=99.34  E-value=9.7e-13  Score=105.43  Aligned_cols=107  Identities=20%  Similarity=0.197  Sum_probs=72.7

Q ss_pred             cccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHHHH----------------------
Q psy8434           3 QVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLL----------------------   60 (114)
Q Consensus         3 QI~~Dv~Rt~~~~~~~~~~~~~~~~~~~L~~iL~a~~~~~p~l~Y~QGm~dIaa~lLl----------------------   60 (114)
                      .|+|||-||-.+.|.+-.+  -+..-++..|||..|+++||.+||-|||.|+.|+.|-                      
T Consensus       498 tvdkdvvrtdrnn~ff~gd--dnpn~e~mk~illn~avyn~~m~ysqgmsdllapvlcevqnesetfwcfvglmqgmsdl  575 (781)
T KOG2224|consen  498 TVDKDVVRTDRNNPFFCGD--DNPNTESMKNILLNFAVYNPAMGYSQGMSDLLAPVLCEVQNESETFWCFVGLMQGMSDL  575 (781)
T ss_pred             EEecceeeccCCCCcccCC--CCCcHHHHHHHHHhheeecccccccccchhhcchhhhhhccccchhhhhhhhhccchhh
Confidence            3789999999876654222  1234467888999999999999999666655555442                      


Q ss_pred             -------HhChhhHHHHHHHHHHhhhhhhhh--cChHHHHHHHHHHHHHHHhhCHHHHHHhhC
Q psy8434          61 -------VVGEMKAFRILEVLSNDHLSENMR--DTMDETSYVLNYMFPLVNKRSSDLCEFLER  114 (114)
Q Consensus        61 -------v~~E~~af~~~~~L~~~~l~d~~~--~~l~~~~~~l~~l~~ll~~~dp~L~~~L~~  114 (114)
                             |++|.++||||+-|+.+   .||-  |.=+.....+-.+.+|++...|..|+||++
T Consensus       576 vapilaevldesdtfwcfvglmqn---a~fv~sp~d~dmd~~l~ylreliri~~~~fykhl~q  635 (781)
T KOG2224|consen  576 VAPILAEVLDESDTFWCFVGLMQN---AFFVCSPRDEDMDHNLLYLRELIRIMHPHFYKHLEQ  635 (781)
T ss_pred             hhhHHHhhhccccchhhhhhhhcc---eEEEeCCcchhhhHhHHHHHHHHHHhhHHHHHHHHH
Confidence                   33555566666555542   2221  222333457778899999999999999974

>KOG1091|consensus

Probab=99.21  E-value=1.7e-11  Score=100.07  Aligned_cols=110  Identities=19%  Similarity=0.215  Sum_probs=82.9

Q ss_pred             ccccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHHHHHh----------C--------
Q psy8434           2 SQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVV----------G--------   63 (114)
Q Consensus         2 ~QI~~Dv~Rt~~~~~~~~~~~~~~~~~~~L~~iL~a~~~~~p~l~Y~QGm~dIaa~lLlv~----------~--------   63 (114)
                      +.|..||.||||..-   .+-+....|..|.|||..|+.+||+++|-||||.+.|++++|.          .        
T Consensus       106 ~~i~qDvsRtfPe~~---~fFqs~~~q~mLr~iLl~~~lehp~i~YrQGMHElLAPl~fVl~~D~q~l~h~se~~~~~l~  182 (625)
T KOG1091|consen  106 KTIDQDVSRTFPEHS---LFFQSPEVQGMLRRILLLYALEHPEIGYRQGMHELLAPLLFVLHVDNQALLHVSESLFDKLG  182 (625)
T ss_pred             HhhcchhhccCcchh---hhhcCchhhHHHHHHHHHHHhhchhhhHHhhhhhhhhhhhhheehhHHHHHHHHHhhhhhcC
Confidence            468999999997652   2224556888999999999999999999999999999999985          1        


Q ss_pred             --hhh-----------HH--HHHHHHHHh--h---------------------hhhhhhcChHHHHHHHHHHHHHHHhhC
Q psy8434          64 --EMK-----------AF--RILEVLSND--H---------------------LSENMRDTMDETSYVLNYMFPLVNKRS  105 (114)
Q Consensus        64 --E~~-----------af--~~~~~L~~~--~---------------------l~d~~~~~l~~~~~~l~~l~~ll~~~d  105 (114)
                        |.+           +.  .++..++..  +                     +.|-+.++++.+.........+++.+|
T Consensus       183 f~E~d~iy~~~y~k~d~dn~~lqs~lmls~~~~~e~e~g~~~~e~~ie~day~~~d~l~~~l~~v~e~~~~~~~lL~~~D  262 (625)
T KOG1091|consen  183 FEERDVIYNFLYLKTDLDNTELQSVLMLSDEYGYEEELGIVLSEKLIEHDAYVMFDALMPGLPPVFEANFAQYHLLAKVD  262 (625)
T ss_pred             cchhhhhhhHHHHhhhccchhHHHHHHhhhccccccCcceecCcccCCcCcccchhhhcccchhHHHHhhhhhhhhhhcc
Confidence              111           22  233344320  1                     124456678888899999999999999


Q ss_pred             HHHHHHhhC
Q psy8434         106 SDLCEFLER  114 (114)
Q Consensus       106 p~L~~~L~~  114 (114)
                      +.|+.||.+
T Consensus       263 ~~Lh~HL~~  271 (625)
T KOG1091|consen  263 KSLHSHLVE  271 (625)
T ss_pred             HHHHHHHHh
Confidence            999999963

>KOG4436|consensus

Probab=98.47  E-value=1.2e-07  Score=80.44  Aligned_cols=111  Identities=16%  Similarity=0.010  Sum_probs=92.0

Q ss_pred             cccccccccCCCCCCCCCHH-----HHHHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHHHHHhChhhHHHHHHHHHHh
Q psy8434           3 QVVLDVNRSLKRFPPGIPIE-----QRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVVGEMKAFRILEVLSND   77 (114)
Q Consensus         3 QI~~Dv~Rt~~~~~~~~~~~-----~~~~~~~~L~~iL~a~~~~~p~l~Y~QGm~dIaa~lLlv~~E~~af~~~~~L~~~   77 (114)
                      -|..|++||.+.+..+...+     ...-.++.|+|+..+|+.+.-+++||||=+++++.++++++||.||.+...++..
T Consensus       230 ~Irrdi~~~~~eh~~fke~~s~~~~~~~~~~d~LfN~~K~~~~~~~E~ifsqGs~~m~Gll~l~~~~E~assv~~~lm~~  309 (948)
T KOG4436|consen  230 IIRRDIERTYPEHYFFKEQSSTVCSDIRFAQDQLFNVAKAYSTKDLEVIFSQGSAFMVGLLLLQMPVEEASSVKVQLMIL  309 (948)
T ss_pred             HHHHHhhccCcceeeeccCccCCcchhHHHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence            37789999987654332111     1234699999999999999999999999999999999999999999999999975


Q ss_pred             -hhhhhhhcChHHHHHHHHHHHHHHHhhCH-HHHHHhh
Q psy8434          78 -HLSENMRDTMDETSYVLNYMFPLVNKRSS-DLCEFLE  113 (114)
Q Consensus        78 -~l~d~~~~~l~~~~~~l~~l~~ll~~~dp-~L~~~L~  113 (114)
                       .++.-+.|.|..+-..+.-+....+...| +++.|+.
T Consensus       310 ~rl~~l~kpe~~~l~~~~~q~e~~~q~~sp~dl~sH~~  347 (948)
T KOG4436|consen  310 YRLRELSKPEMEPLGLCMFQLECTNQDQSPMDLFSHFP  347 (948)
T ss_pred             hcccccCCcccchhHHHHHhhcccccccchhHHhhccc
Confidence             68999999999887777777777788888 8888864

>KOG1648|consensus

Probab=91.47  E-value=0.0055  Score=50.83  Aligned_cols=97  Identities=13%  Similarity=0.165  Sum_probs=58.3

Q ss_pred             cccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHHHHHh-ChhhHHHHHHHHHH---hh
Q psy8434           3 QVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVV-GEMKAFRILEVLSN---DH   78 (114)
Q Consensus         3 QI~~Dv~Rt~~~~~~~~~~~~~~~~~~~L~~iL~a~~~~~p~l~Y~QGm~dIaa~lLlv~-~E~~af~~~~~L~~---~~   78 (114)
                      -|.+|+.|+-.+...|++.+..++     .++...|..+|=+-||+|||-|+.++++-.+ +|.....|+.-++.   .+
T Consensus       609 ~~~kd~e~~~~~~~~fs~~~~les-----~~~~~~~~~~~l~~~~~~~~~dl~~p~~~~~ed~~~~~e~~s~~~~~q~~~  683 (813)
T KOG1648|consen  609 RIDKDVERCDRNLMFFSNKDNLES-----RRVMYTYVRRNLEEGYTQGMCDLLAPLLVTFEDEALTLECFSLLMLRQRGK  683 (813)
T ss_pred             eecchhhhCcchheeecCCcchhh-----heeeeeeeccccccccccchhhccCCcCCChhhcccccCCCcHHHHHhccc
Confidence            478899887655444433322212     4577888899999999999999999976555 33333334444443   23


Q ss_pred             h--hhhhhcChHHHHHHHHHHHHHHHhhC
Q psy8434          79 L--SENMRDTMDETSYVLNYMFPLVNKRS  105 (114)
Q Consensus        79 l--~d~~~~~l~~~~~~l~~l~~ll~~~d  105 (114)
                      +  ++-|.+.+..+. ...+...|+..+|
T Consensus       684 ~~q~~~~~~~l~~~r-~~~v~~~l~s~id  711 (813)
T KOG1648|consen  684 FPQRPGMSKCLLNLR-LIQVVDPLISDID  711 (813)
T ss_pred             CCCCCCccccccccc-chhhhcchhcchh
Confidence            3  344555554433 4455555555444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	114
4hlq_A	305	Crystal Structure Of Human Rab1b Bound To Gdp And B		2e-23
4hl4_A	292	Crystal Structure Of The Human Tbc1d20 Rabgap Domai		2e-23

>pdb|4HLQ|A Chain A, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens Length = 305

Iteration: 1
 Score =  103 bits (258), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 50/113 (44%), Positives = 73/113 (64%)
Query: 1   YSQVVLDVNRSLKRFPPGIPIEXXXXXXXXXXXXXXKVIHAYPRLRYYQGYHDVAITFLL 60
           Y QV+LDV RSL+RFPPG+P E               ++   P+L YYQGYHD+ +TFLL
Sbjct: 96  YQQVLLDVRRSLRRFPPGMPEEQREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLL 155
Query: 61  VVGEMKAFRILEVLSNDHLSENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLE 113
           VVGE  A  ++E LS  HL + M  TMD T ++LNY+ P++++ + +L +F++
Sbjct: 156 VVGERLATSLVEKLSTHHLRDFMDPTMDNTKHILNYLMPIIDQVNPELHDFMQ 208

>pdb|4HL4|A Chain A, Crystal Structure Of The Human Tbc1d20 Rabgap Domain Length = 292

Iteration: 1
 Score =  103 bits (258), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 50/113 (44%), Positives = 73/113 (64%)
Query: 1   YSQVVLDVNRSLKRFPPGIPIEXXXXXXXXXXXXXXKVIHAYPRLRYYQGYHDVAITFLL 60
           Y QV+LDV RSL+RFPPG+P E               ++   P+L YYQGYHD+ +TFLL
Sbjct: 83  YQQVLLDVRRSLRRFPPGMPEEQREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLL 142
Query: 61  VVGEMKAFRILEVLSNDHLSENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLE 113
           VVGE  A  ++E LS  HL + M  TMD T ++LNY+ P++++ + +L +F++
Sbjct: 143 VVGERLATSLVEKLSTHHLRDFMDPTMDNTKHILNYLMPIIDQVNPELHDFMQ 195

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	114
4hl4_A	292	TBC1 domain family member 20; rabgap, RAB1B, hydro	100.0
3hzj_A	310	Rabgap1L, RAB GTPase-activating protein 1-like; st	99.97
3qye_A	331	TBC1 domain family member 1; rabgap, RAB, myocytes	99.97
2qq8_A	334	TBC1 domain family member 14; structural genomics	99.97
1fkm_A	396	Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein	99.96
2qfz_A	345	TBC1 domain family member 22A; RAB-GAP, GTPase act	99.96
3qwl_A	294	TBC1 domain family member 7; RAB GTPase activation	99.44

>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*

Probab=100.00  E-value=6e-36  Score=226.17  Aligned_cols=113  Identities=50%  Similarity=0.883  Sum_probs=108.3

Q ss_pred             ccccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHHHHHhChhhHHHHHHHHHHhhhhh
Q psy8434           2 SQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVVGEMKAFRILEVLSNDHLSE   81 (114)
Q Consensus         2 ~QI~~Dv~Rt~~~~~~~~~~~~~~~~~~~L~~iL~a~~~~~p~l~Y~QGm~dIaa~lLlv~~E~~af~~~~~L~~~~l~d   81 (114)
                      +||++||+|||++++.+.++++++.+|++|.|||.+|+.+||++|||||||+|||+||++++|++||||+++++..++++
T Consensus        84 ~qI~~Dv~RT~~~~~~~~~~~~~~~~~~~L~~iL~ay~~~~p~vgY~QGm~~iaa~lLl~~~e~~aF~~l~~l~~~~l~~  163 (292)
T 4hl4_A           84 QQVLLDVRRSLRRFPPGMPEEQREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVVGERLATSLVEKLSTHHLRD  163 (292)
T ss_dssp             HHHHHHHHTTGGGSCTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCTTHHHHHHHHHHHHCHHHHHHHHHHHHHTTTTG
T ss_pred             HHHHHhhhhhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCeeccHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence            69999999999999988877788899999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcChHHHHHHHHHHHHHHHhhCHHHHHHhhC
Q psy8434          82 NMRDTMDETSYVLNYMFPLVNKRSSDLCEFLER  114 (114)
Q Consensus        82 ~~~~~l~~~~~~l~~l~~ll~~~dp~L~~~L~~  114 (114)
                      ||.++++++...++++..|++..||+|++||++
T Consensus       164 ~~~~~~~~~~~~~~~l~~ll~~~~P~L~~hL~~  196 (292)
T 4hl4_A          164 FMDPTMDNTKHILNYLMPIIDQVNPELHDFMQS  196 (292)
T ss_dssp             GGCSSSCTTTGGGGGHHHHHHHHCHHHHHHHC-
T ss_pred             hcccchHHHHHHHHHHHHHHHHHCHHHHHHHHH
Confidence            999999999999999999999999999999964

>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}

Probab=99.97  E-value=4.3e-32  Score=206.20  Aligned_cols=110  Identities=19%  Similarity=0.176  Sum_probs=102.3

Q ss_pred             ccccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHHHHHhChhhHHHHHHHHHHh-hhh
Q psy8434           2 SQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVVGEMKAFRILEVLSND-HLS   80 (114)
Q Consensus         2 ~QI~~Dv~Rt~~~~~~~~~~~~~~~~~~~L~~iL~a~~~~~p~l~Y~QGm~dIaa~lLlv~~E~~af~~~~~L~~~-~l~   80 (114)
                      +||++||+||+|.++.+...  .+.+++.|.|||.+|+..||++|||||||+|||+||++++|++||||+.+++.. .++
T Consensus        71 ~~I~~Dv~Rt~p~~~~f~~~--~~~~~~~L~~IL~ay~~~~p~igY~QGm~~iaa~lL~~~~e~~aF~~l~~l~~~~~~~  148 (310)
T 3hzj_A           71 SVITRDIHRTFPAHDYFKDT--GGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHMPEEQAFCVLVKIMYDYGLR  148 (310)
T ss_dssp             HHHHHHHTTSSTTSTTTSST--TSHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHSCHHHHHHHHHHHHHTSCGG
T ss_pred             HHHHHHHHhhCCCchhhcCC--CchhHHHHHHHHHHHHHHCCCCCccCCHHHHHHHHHHhCCHHHHHHHHHHHHhccccc
Confidence            58999999999998877543  346899999999999999999999999999999999999999999999999976 499


Q ss_pred             hhhhcChHHHHHHHHHHHHHHHhhCHHHHHHhh
Q psy8434          81 ENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLE  113 (114)
Q Consensus        81 d~~~~~l~~~~~~l~~l~~ll~~~dp~L~~~L~  113 (114)
                      ++|.++++++...+..+..|++..||+|++||+
T Consensus       149 ~~~~~~~~~~~~~~~~l~~ll~~~~p~L~~hL~  181 (310)
T 3hzj_A          149 DLYRNNFEDLHCKFYQLERLMQEQLPDLHSHFS  181 (310)
T ss_dssp             GGTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence            999999999999999999999999999999996

>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A

Probab=99.97  E-value=8.4e-32  Score=205.99  Aligned_cols=111  Identities=24%  Similarity=0.228  Sum_probs=102.8

Q ss_pred             ccccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHHHHHhChhhHHHHHHHHHHhh-hh
Q psy8434           2 SQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVVGEMKAFRILEVLSNDH-LS   80 (114)
Q Consensus         2 ~QI~~Dv~Rt~~~~~~~~~~~~~~~~~~~L~~iL~a~~~~~p~l~Y~QGm~dIaa~lLlv~~E~~af~~~~~L~~~~-l~   80 (114)
                      +||++||+||+|.++.+...  .+.+++.|.|||.+|+.+||++|||||||+|||+||++++|++||||+..|+..+ ++
T Consensus       105 ~~I~~Dv~Rt~~~~~~f~~~--~~~~~~~L~~IL~ay~~~~p~igY~QGm~~i~a~ll~~~~E~~aF~~l~~l~~~~~~~  182 (331)
T 3qye_A          105 HAILIDLGRTFPTHPYFSAQ--LGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHMSEEEAFKMLKFLMFDMGLR  182 (331)
T ss_dssp             HHHHHHHTTSSTTSTTTCST--TCHHHHHHHHHHHHHHHHCTTTSSCTTHHHHHHHHHTTSCHHHHHHHHHHHHTTTCGG
T ss_pred             hHHHHhhcccCCCchhhcCC--CcccHHHHHHHHHHHHHHCCCccccccHHHHHHHHHHHhhHHHHHHHHHHHHHhcCch
Confidence            58999999999998877543  2458899999999999999999999999999999999999999999999999865 89


Q ss_pred             hhhhcChHHHHHHHHHHHHHHHhhCHHHHHHhhC
Q psy8434          81 ENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLER  114 (114)
Q Consensus        81 d~~~~~l~~~~~~l~~l~~ll~~~dp~L~~~L~~  114 (114)
                      ++|.++++++...+..+..|++..||+|++||++
T Consensus       183 ~~~~~~~~~~~~~~~~l~~ll~~~~p~L~~hL~~  216 (331)
T 3qye_A          183 KQYRPDMIILQIQMYQLSRLLHDYHRDLYNHLEE  216 (331)
T ss_dssp             GGGSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             hcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999963

>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}

Probab=99.97  E-value=2.9e-31  Score=204.01  Aligned_cols=109  Identities=16%  Similarity=0.127  Sum_probs=100.3

Q ss_pred             ccccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHHHHHhChhhHHHHHHHHHHhh-hh
Q psy8434           2 SQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVVGEMKAFRILEVLSNDH-LS   80 (114)
Q Consensus         2 ~QI~~Dv~Rt~~~~~~~~~~~~~~~~~~~L~~iL~a~~~~~p~l~Y~QGm~dIaa~lLlv~~E~~af~~~~~L~~~~-l~   80 (114)
                      +||++||+||||.++.+..   .+.+++.|.|||.+|+..||++|||||||+|||+||++++|++|||||.+|+... .+
T Consensus       111 ~~I~~Dv~RT~p~~~~F~~---~~~~~~~L~rIL~aya~~~p~vgY~QGm~~iaa~lLl~~~E~~aF~~~~~l~~~~~~~  187 (334)
T 2qq8_A          111 ELIKLDISRTFPNLCIFQQ---GGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLDTADAFIAFSNLLNKPCQM  187 (334)
T ss_dssp             HHHHHHHHTSSGGGCSSST---TSTTHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHSCHHHHHHHHHHHHTSHHHH
T ss_pred             HHHHHHHhhcCCCchhhcC---CCchHHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhHH
Confidence            5899999999998877643   2357899999999999999999999999999999999999999999999999865 57


Q ss_pred             hhhhcChHHHHHHHHHHHHHHHhhCHHHHHHhh
Q psy8434          81 ENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLE  113 (114)
Q Consensus        81 d~~~~~l~~~~~~l~~l~~ll~~~dp~L~~~L~  113 (114)
                      +||.++++++...+.++..|++..||+|++||+
T Consensus       188 ~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hL~  220 (334)
T 2qq8_A          188 AFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFK  220 (334)
T ss_dssp             HHHSSCCHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             hccCCChHHHHHHHHHHHHHHHHHCHHHHHHHH
Confidence            899999999999999999999999999999996

>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*

Probab=99.96  E-value=3.3e-30  Score=202.37  Aligned_cols=108  Identities=19%  Similarity=0.257  Sum_probs=99.2

Q ss_pred             ccccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHHHHHh-------------------
Q psy8434           2 SQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVV-------------------   62 (114)
Q Consensus         2 ~QI~~Dv~Rt~~~~~~~~~~~~~~~~~~~L~~iL~a~~~~~p~l~Y~QGm~dIaa~lLlv~-------------------   62 (114)
                      +||++||.||+|.++.+..    +.+|+.|.|||.+|+..||++|||||||+|||+||+|+                   
T Consensus        88 ~qI~~Dv~RT~p~~~~F~~----~~~~~~L~rIL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~  163 (396)
T 1fkm_A           88 HQIEIDIPRTNPHIPLYQF----KSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPS  163 (396)
T ss_dssp             HHHHHHGGGSSTTSGGGGS----HHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGG
T ss_pred             HHHHHHhhhhCCCcccccC----chHHHHHHHHHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhccccccccccccchh
Confidence            6899999999998877643    35899999999999999999999999999999999985                   


Q ss_pred             ---C-------hhhHHHHHHHHHHhhhhhhhhcChHHHHHHHHHHHHHHHhhCHHHHHHhhC
Q psy8434          63 ---G-------EMKAFRILEVLSNDHLSENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLER  114 (114)
Q Consensus        63 ---~-------E~~af~~~~~L~~~~l~d~~~~~l~~~~~~l~~l~~ll~~~dp~L~~~L~~  114 (114)
                         +       |++|||||++|+.. ++++|.++++++...+.++..||+..||+|++||++
T Consensus       164 ~~l~~~~~~~~E~daF~~f~~lm~~-~~~~f~~~~~~i~~~~~~l~~LL~~~dP~L~~hL~~  224 (396)
T 1fkm_A          164 TYMVDEQITDLEADTFWCLTKLLEQ-ITDNYIHGQPGILRQVKNLSQLVKRIDADLYNHFQN  224 (396)
T ss_dssp             GTCCHHHHHHHHHHHHHHHHHHHGG-GGGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             hccchhhhhhhHHHHHHHHHHHHHH-HHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               2       89999999999986 699999999999999999999999999999999973

>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A

Probab=99.96  E-value=3.7e-30  Score=197.96  Aligned_cols=107  Identities=15%  Similarity=0.238  Sum_probs=97.0

Q ss_pred             ccccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHHHHHhC------------------
Q psy8434           2 SQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVVG------------------   63 (114)
Q Consensus         2 ~QI~~Dv~Rt~~~~~~~~~~~~~~~~~~~L~~iL~a~~~~~p~l~Y~QGm~dIaa~lLlv~~------------------   63 (114)
                      +||++||+||+|. +.+..    ..+|+.|.|||.+|+..||++|||||||+|||+||+++.                  
T Consensus       106 ~~I~~Dv~RT~p~-~~F~~----~~~~~~L~rIL~~ya~~~p~vgY~QGm~~i~a~ll~v~~~~~~~~~~~~~~~~~~l~  180 (345)
T 2qfz_A          106 RQIHIDIPRMSPE-ALILQ----PKVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVP  180 (345)
T ss_dssp             HHHHHHGGGCSCH-HHHTS----HHHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHGGGCC-----CCCCTTSC
T ss_pred             HHHHHhCcccCCc-cccCC----chHHHHHHHHHHHHHHHCCCCCcccChHHHHHHHHHHHHhhhcccccccccchhhhh
Confidence            6899999999987 55543    347899999999999999999999999999999998862                  


Q ss_pred             -------hhhHHHHHHHHHHhhhhhhhhcChHHHHHHHHHHHHHHHhhCHHHHHHhhC
Q psy8434          64 -------EMKAFRILEVLSNDHLSENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLER  114 (114)
Q Consensus        64 -------E~~af~~~~~L~~~~l~d~~~~~l~~~~~~l~~l~~ll~~~dp~L~~~L~~  114 (114)
                             |++|||||++|+.. ++++|.++++++...+.++..|++..||+|++||++
T Consensus       181 ~~~~~~~E~daF~~f~~lm~~-~~~~y~~~~~~i~~~~~~l~~ll~~~dP~L~~hL~~  237 (345)
T 2qfz_A          181 AEVLCNIEADTYWCMSKLLDG-IQDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQ  237 (345)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT-SGGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHHHHHc-cccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   89999999999986 499999999999999999999999999999999973

>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}

Probab=99.44  E-value=1.2e-13  Score=104.96  Aligned_cols=64  Identities=16%  Similarity=0.202  Sum_probs=57.3

Q ss_pred             cchhhHHHHHHHHHHh-ChhhHHHHHHHHHHhhhhhhhhcChHHHHHHHHHHHHHHHhhCHHHHHHhhC
Q psy8434          47 YYQGYHDVAITFLLVV-GEMKAFRILEVLSNDHLSENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLER  114 (114)
Q Consensus        47 Y~QGm~dIaa~lLlv~-~E~~af~~~~~L~~~~l~d~~~~~l~~~~~~l~~l~~ll~~~dp~L~~~L~~  114 (114)
                      ++|||.+|||++++++ +|++|||||..|+.. ++++|.++++|+++.+   ..|++..||+|++||++
T Consensus       131 ~~~~~~~Iaa~ll~l~~~E~dAFW~f~~Lm~~-l~~~f~~~~~gl~~~l---~~LL~~~dP~L~~HL~~  195 (294)
T 3qwl_A          131 DDEVFLAIAKAMEEMVEDSVDCYWITRRFVNQ-LNTKYRDSLPQLPKAF---EQYLNLEDGRLLTHLRM  195 (294)
T ss_dssp             HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHH-HHTTTTTTGGGHHHHH---HHHHHHHCHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHhCCHHHHHHHHHHHHHH-HHHhhCCChhHHHHHH---HHHHHHHHHHHHHHHHH
Confidence            5699999999999776 799999999999987 7899999999987654   88999999999999973

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	114
d1fkma1	194	Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha	99.92

>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=2.6e-26  Score=162.76  Aligned_cols=78  Identities=22%  Similarity=0.287  Sum_probs=68.2

Q ss_pred             ccccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHHHHHhC------------------
Q psy8434           2 SQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVVG------------------   63 (114)
Q Consensus         2 ~QI~~Dv~Rt~~~~~~~~~~~~~~~~~~~L~~iL~a~~~~~p~l~Y~QGm~dIaa~lLlv~~------------------   63 (114)
                      +||++||+||+|.++.+..+    ..++.|.|||.+|+..||++|||||||+|||+|++++.                  
T Consensus        87 ~~I~~Dv~RT~~~~~~f~~~----~~~~~L~rIL~~ya~~np~~gY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~  162 (194)
T d1fkma1          87 HQIEIDIPRTNPHIPLYQFK----SVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPS  162 (194)
T ss_dssp             HHHHHHGGGSSTTSGGGGSH----HHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGG
T ss_pred             HHHHHHHHhcCCcccccccc----hhHHHHHHHHHHHHHHCCCCCeeecchHHHHHHHHHHhhhhhhhhhhhhhhhcchh
Confidence            68999999999988766443    47899999999999999999999999999999999861                  


Q ss_pred             -----------hhhHHHHHHHHHHhhhhhhhh
Q psy8434          64 -----------EMKAFRILEVLSNDHLSENMR   84 (114)
Q Consensus        64 -----------E~~af~~~~~L~~~~l~d~~~   84 (114)
                                 |++|||||++++.. ++|+|.
T Consensus       163 ~~~~~~~~~~~Ead~F~~f~~lm~~-i~d~y~  193 (194)
T d1fkma1         163 TYMVDEQITDLEADTFWCLTKLLEQ-ITDNYI  193 (194)
T ss_dssp             GTCCHHHHHHHHHHHHHHHHHHHGG-GGGGSS
T ss_pred             hhhhhhhhhhHHHHHHHHHHHHHHh-hhccCC
Confidence                       78899999999875 677763