Psyllid ID: psy8530

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------
Protein Sequence
MVHTWMGDQVDMLEDHLGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADLGLISR
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccHHHHHHHHHHHHHHccccEEEEEcccccHccHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mvhtwmgdQVDMLEDHLGIIRRDELVFMKARerrvpivmltsggylkQTARIIADSILNLADLGLISR
Flexible Loop (DISEMBL)
mvhtwmgdqvdmledhLGIIRRDELVfmkarerrvpivmltsggylkQTARIIADSILnladlglisr
Low Complexity Region (SEG)
MVHTWMGDQVDMLEDHLGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADLGLISR
Disordered region (IsUnstruct)
****WMGDQVDMLEDHLGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADLGLI**
Disordered Region (DISOPRED)
*VHTWMGDQVDMLEDHLGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADLGLIS*
Disordered Region (DISEMBL)
MVHTWMGDQVDMLEDHLGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADLGLISR
Disordered Region (DISPRO)
****W*GDQVDMLEDHLGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADLGLI**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVHTWMGDQVDMLEDHLGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADLGLISR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	68	2.2.26 [Sep-21-2011]
Q96DB2	347	Histone deacetylase 11 OS	yes	N/A	0.720	0.141	0.755	3e-13
Q9GKU5	347	Histone deacetylase 11 OS	N/A	N/A	0.720	0.141	0.734	1e-12
Q91WA3	347	Histone deacetylase 11 OS	yes	N/A	0.735	0.144	0.68	3e-12
Q944K3	387	Histone deacetylase 2 OS=	no	N/A	0.720	0.126	0.653	2e-11

>sp|Q96DB2|HDA11_HUMAN Histone deacetylase 11 OS=Homo sapiens GN=HDAC11 PE=1 SV=1

 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/49 (75%), Positives = 42/49 (85%)

Query: 18  GIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADLGLI 66
           GI++RDELVF   R RRVPI+M+TSGGY K+TARIIADSILNL  LGLI
Sbjct: 277 GIVKRDELVFRMVRGRRVPILMVTSGGYQKRTARIIADSILNLFGLGLI 325

Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 9EC: 8

>sp|Q9GKU5|HDA11_MACFA Histone deacetylase 11 OS=Macaca fascicularis GN=HDAC11 PE=2 SV=2

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/49 (73%), Positives = 41/49 (83%)

Query: 18  GIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADLGLI 66
           GI++RDELVF   R R VPI+M+TSGGY K+TARIIADSILNL  LGLI
Sbjct: 277 GIVKRDELVFRMVRGRHVPILMVTSGGYQKRTARIIADSILNLFGLGLI 325

Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.

Macaca fascicularis (taxid: 9541)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 9

EC: 8

>sp|Q91WA3|HDA11_MOUSE Histone deacetylase 11 OS=Mus musculus GN=Hdac11 PE=2 SV=1

 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/50 (68%), Positives = 41/50 (82%)

Query: 18  GIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADLGLIS 67
           GI++RDE+VF   R   +PI+M+TSGGY K+TARIIADSILNL DLGLI 
Sbjct: 277 GIVKRDEVVFRVVRAHDIPILMVTSGGYQKRTARIIADSILNLHDLGLIG 326

Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 9

EC: 8

>sp|Q944K3|HDA2_ARATH Histone deacetylase 2 OS=Arabidopsis thaliana GN=HDA2 PE=1 SV=2

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/49 (65%), Positives = 39/49 (79%)

Query: 18  GIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADLGLI 66
           GI  RDE VF  ARE+ +P+VMLTSGGY+K +AR+IADSI NL+  GLI
Sbjct: 334 GITSRDEKVFRFAREKNIPLVMLTSGGYMKSSARVIADSIENLSRQGLI 382

Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 9

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	68
449266313	334	Histone deacetylase 11, partial [Columba	0.75	0.152	0.705	6e-13
326927845	425	PREDICTED: histone deacetylase 11-like [	0.75	0.12	0.686	2e-12
332231745	319	PREDICTED: histone deacetylase 11 isofor	0.735	0.156	0.76	2e-12
332231747	343	PREDICTED: histone deacetylase 11 isofor	0.720	0.142	0.775	2e-12
91080831	331	PREDICTED: similar to Histone deacetylas	0.735	0.151	0.72	3e-12
156393770	364	predicted protein [Nematostella vectensi	0.735	0.137	0.68	3e-12
149419640	172	PREDICTED: histone deacetylase 11-like,	0.75	0.296	0.705	5e-12
118096828	358	PREDICTED: histone deacetylase 11 [Gallu	0.75	0.142	0.686	5e-12
432097765	360	Histone deacetylase 11 [Myotis davidii]	0.720	0.136	0.755	8e-12
431899765	417	Histone deacetylase 11 [Pteropus alecto]	0.720	0.117	0.734	9e-12

>gi|449266313|gb|EMC77377.1| Histone deacetylase 11, partial [Columba livia]

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 36/51 (70%), Positives = 44/51 (86%)

Query: 18  GIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADLGLISR 68
           GI++RDE+VF  AR RR+PI+M+TSGGY K+TARIIADSILNL  LGLI +
Sbjct: 275 GIVKRDEVVFKAARRRRIPILMVTSGGYQKRTARIIADSILNLHSLGLIDK 325

Source: Columba livia

Species: Columba livia

Genus: Columba

Family: Columbidae

Order: Columbiformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326927845|ref|XP_003210099.1| PREDICTED: histone deacetylase 11-like [Meleagris gallopavo]

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/51 (68%), Positives = 44/51 (86%)

Query: 18  GIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADLGLISR 68
           GI++RDE+VF  AR R +PI+M+TSGGY K+TARIIADSILNL +LGLI +
Sbjct: 346 GIVKRDEVVFKAARSRGIPILMVTSGGYQKRTARIIADSILNLHNLGLIDK 396

Source: Meleagris gallopavo

Species: Meleagris gallopavo

Genus: Meleagris

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|332231745|ref|XP_003265055.1| PREDICTED: histone deacetylase 11 isoform 1 [Nomascus leucogenys]

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/50 (76%), Positives = 43/50 (86%)

Query: 18  GIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADLGLIS 67
           GI++RDELVF   R RRVPI+M+TSGGY K+TARIIADSILNL DLGLI 
Sbjct: 249 GIVKRDELVFRMVRGRRVPILMVTSGGYQKRTARIIADSILNLFDLGLIG 298

Source: Nomascus leucogenys

Species: Nomascus leucogenys

Genus: Nomascus

Family: Hylobatidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|332231747|ref|XP_003265056.1| PREDICTED: histone deacetylase 11 isoform 2 [Nomascus leucogenys]

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/49 (77%), Positives = 43/49 (87%)

Query: 18  GIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADLGLI 66
           GI++RDELVF   R RRVPI+M+TSGGY K+TARIIADSILNL DLGLI
Sbjct: 273 GIVKRDELVFRMVRGRRVPILMVTSGGYQKRTARIIADSILNLFDLGLI 321

Source: Nomascus leucogenys

Species: Nomascus leucogenys

Genus: Nomascus

Family: Hylobatidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|91080831|ref|XP_970656.1| PREDICTED: similar to Histone deacetylase 11 (HD11) [Tribolium castaneum] gi|270005420|gb|EFA01868.1| hypothetical protein TcasGA2_TC007473 [Tribolium castaneum]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/50 (72%), Positives = 42/50 (84%)

Query: 18  GIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADLGLIS 67
           GII RDELVF +AR R +PIVMLTSGGYLK++A+IIA SI NL D GLI+
Sbjct: 276 GIIERDELVFREARSRNIPIVMLTSGGYLKKSAKIIATSIKNLHDSGLIT 325

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156393770|ref|XP_001636500.1| predicted protein [Nematostella vectensis] gi|156223604|gb|EDO44437.1| predicted protein [Nematostella vectensis]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/50 (68%), Positives = 44/50 (88%)

Query: 18  GIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADLGLIS 67
           GII+RD++VF +AR R +PI+M+TSGGY ++TARIIADSILNL + GLIS
Sbjct: 294 GIIQRDQIVFQEARSRSIPIMMVTSGGYQRRTARIIADSILNLHEQGLIS 343

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|149419640|ref|XP_001518860.1| PREDICTED: histone deacetylase 11-like, partial [Ornithorhynchus anatinus]

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/51 (70%), Positives = 43/51 (84%)

Query: 18  GIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADLGLISR 68
           GI++RDE+VF  AR  RVPI+M+TSGGY K+TARIIADSILNL  LGLI +
Sbjct: 93  GIVKRDEIVFRAARTHRVPILMVTSGGYQKRTARIIADSILNLHSLGLIDK 143

Source: Ornithorhynchus anatinus

Species: Ornithorhynchus anatinus

Genus: Ornithorhynchus

Family: Ornithorhynchidae

Order: Monotremata

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|118096828|ref|XP_414321.2| PREDICTED: histone deacetylase 11 [Gallus gallus]

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 35/51 (68%), Positives = 44/51 (86%)

Query: 18  GIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADLGLISR 68
           GI++RDE+VF  AR R +PI+M+TSGGY K+TARIIADSILNL +LGLI +
Sbjct: 277 GIVKRDEVVFKAARSRGIPILMVTSGGYQKRTARIIADSILNLHNLGLIDK 327

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|432097765|gb|ELK27813.1| Histone deacetylase 11 [Myotis davidii]

 Score = 74.3 bits (181), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 37/49 (75%), Positives = 43/49 (87%)

Query: 18  GIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADLGLI 66
           GI++RDELVF  AR  +VPI+M+TSGGY K+TARIIADSILNL DLGLI
Sbjct: 294 GIVKRDELVFRVARRCQVPILMVTSGGYQKRTARIIADSILNLYDLGLI 342

Source: Myotis davidii

Species: Myotis davidii

Genus: Myotis

Family: Vespertilionidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|431899765|gb|ELK07712.1| Histone deacetylase 11 [Pteropus alecto]

 Score = 74.3 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 36/49 (73%), Positives = 42/49 (85%)

Query: 18  GIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADLGLI 66
           GI++RDELVF   R R+VPI+M+TSGGY K+TARIIADSILNL  LGLI
Sbjct: 347 GIMKRDELVFRVVRGRQVPILMVTSGGYQKRTARIIADSILNLYGLGLI 395

Source: Pteropus alecto

Species: Pteropus alecto

Genus: Pteropus

Family: Pteropodidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	68
UNIPROTKB|F1NYW6	357	HDAC11 "Uncharacterized protei	0.75	0.142	0.686	2.5e-14
UNIPROTKB|B5MCQ6	268	HDAC11 "Histone deacetylase 11	0.882	0.223	0.655	4.9e-14
UNIPROTKB|B5MCS3	181	HDAC11 "Histone deacetylase 11	0.882	0.331	0.655	4.9e-14
UNIPROTKB|B5MCU6	247	HDAC11 "Histone deacetylase 11	0.882	0.242	0.655	4.9e-14
UNIPROTKB|F5H6R5	155	HDAC11 "Histone deacetylase 11	0.882	0.387	0.655	4.9e-14
UNIPROTKB|E7ETT9	319	HDAC11 "Histone deacetylase 11	0.882	0.188	0.655	1.1e-13
UNIPROTKB|Q96DB2	347	HDAC11 "Histone deacetylase 11	0.882	0.172	0.655	1.5e-13
UNIPROTKB|Q9GKU5	347	HDAC11 "Histone deacetylase 11	0.882	0.172	0.639	5.3e-13
UNIPROTKB|F1PSI9	319	HDAC11 "Uncharacterized protei	0.882	0.188	0.622	8.6e-13
MGI|MGI:2385252	347	Hdac11 "histone deacetylase 11	0.882	0.172	0.606	1.5e-12

UNIPROTKB|F1NYW6 HDAC11 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 178 (67.7 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
 Identities = 35/51 (68%), Positives = 44/51 (86%)

Query:    18 GIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADLGLISR 68
             GI++RDE+VF  AR R +PI+M+TSGGY K+TARIIADSILNL +LGLI +
Sbjct:   276 GIVKRDEVVFKAARSRGIPILMVTSGGYQKRTARIIADSILNLHNLGLIDK 326

GO:0000118 "histone deacetylase complex" evidence=IEA

GO:0004407 "histone deacetylase activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|B5MCQ6 HDAC11 "Histone deacetylase 11" [Homo sapiens (taxid:9606)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 40/61 (65%), Positives = 47/61 (77%)

Query:     7 GDQVDMLE-DHLGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADLGL 65
             GD++  L     GI++RDELVF   R RRVPI+M+TSGGY K+TARIIADSILNL  LGL
Sbjct:   186 GDRLGGLSISPAGIVKRDELVFRMVRGRRVPILMVTSGGYQKRTARIIADSILNLFGLGL 245

Query:    66 I 66
             I
Sbjct:   246 I 246

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|B5MCS3 HDAC11 "Histone deacetylase 11" [Homo sapiens (taxid:9606)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 40/61 (65%), Positives = 47/61 (77%)

Query:     7 GDQVDMLE-DHLGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADLGL 65
             GD++  L     GI++RDELVF   R RRVPI+M+TSGGY K+TARIIADSILNL  LGL
Sbjct:    99 GDRLGGLSISPAGIVKRDELVFRMVRGRRVPILMVTSGGYQKRTARIIADSILNLFGLGL 158

Query:    66 I 66
             I
Sbjct:   159 I 159

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|B5MCU6 HDAC11 "Histone deacetylase 11" [Homo sapiens (taxid:9606)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 40/61 (65%), Positives = 47/61 (77%)

Query:     7 GDQVDMLE-DHLGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADLGL 65
             GD++  L     GI++RDELVF   R RRVPI+M+TSGGY K+TARIIADSILNL  LGL
Sbjct:   165 GDRLGGLSISPAGIVKRDELVFRMVRGRRVPILMVTSGGYQKRTARIIADSILNLFGLGL 224

Query:    66 I 66
             I
Sbjct:   225 I 225

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|F5H6R5 HDAC11 "Histone deacetylase 11" [Homo sapiens (taxid:9606)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 40/61 (65%), Positives = 47/61 (77%)

Query:     7 GDQVDMLE-DHLGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADLGL 65
             GD++  L     GI++RDELVF   R RRVPI+M+TSGGY K+TARIIADSILNL  LGL
Sbjct:    73 GDRLGGLSISPAGIVKRDELVFRMVRGRRVPILMVTSGGYQKRTARIIADSILNLFGLGL 132

Query:    66 I 66
             I
Sbjct:   133 I 133

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0014003 "oligodendrocyte development" evidence=IEA

UNIPROTKB|E7ETT9 HDAC11 "Histone deacetylase 11" [Homo sapiens (taxid:9606)]

 Score = 181 (68.8 bits), Expect = 1.1e-13, P = 1.1e-13
 Identities = 40/61 (65%), Positives = 47/61 (77%)

Query:     7 GDQVDMLE-DHLGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADLGL 65
             GD++  L     GI++RDELVF   R RRVPI+M+TSGGY K+TARIIADSILNL  LGL
Sbjct:   237 GDRLGGLSISPAGIVKRDELVFRMVRGRRVPILMVTSGGYQKRTARIIADSILNLFGLGL 296

Query:    66 I 66
             I
Sbjct:   297 I 297

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0014003 "oligodendrocyte development" evidence=IEA

UNIPROTKB|Q96DB2 HDAC11 "Histone deacetylase 11" [Homo sapiens (taxid:9606)]

 Score = 181 (68.8 bits), Expect = 1.5e-13, P = 1.5e-13
 Identities = 40/61 (65%), Positives = 47/61 (77%)

Query:     7 GDQVDMLE-DHLGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADLGL 65
             GD++  L     GI++RDELVF   R RRVPI+M+TSGGY K+TARIIADSILNL  LGL
Sbjct:   265 GDRLGGLSISPAGIVKRDELVFRMVRGRRVPILMVTSGGYQKRTARIIADSILNLFGLGL 324

Query:    66 I 66
             I
Sbjct:   325 I 325

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0032041 "NAD-dependent histone deacetylase activity (H3-K14 specific)" evidence=IEA

GO:0046969 "NAD-dependent histone deacetylase activity (H3-K9 specific)" evidence=IEA

GO:0046970 "NAD-dependent histone deacetylase activity (H4-K16 specific)" evidence=IEA

GO:0097372 "NAD-dependent histone deacetylase activity (H3-K18 specific)" evidence=IEA

GO:0014003 "oligodendrocyte development" evidence=IEA

GO:0000118 "histone deacetylase complex" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0016568 "chromatin modification" evidence=TAS

GO:0004407 "histone deacetylase activity" evidence=IDA

GO:0016575 "histone deacetylation" evidence=IDA

GO:0008134 "transcription factor binding" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|Q9GKU5 HDAC11 "Histone deacetylase 11" [Macaca fascicularis (taxid:9541)]

 Score = 176 (67.0 bits), Expect = 5.3e-13, P = 5.3e-13
 Identities = 39/61 (63%), Positives = 46/61 (75%)

Query:     7 GDQVDMLE-DHLGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADLGL 65
             GD++  L     GI++RDELVF   R R VPI+M+TSGGY K+TARIIADSILNL  LGL
Sbjct:   265 GDRLGGLSISPAGIVKRDELVFRMVRGRHVPILMVTSGGYQKRTARIIADSILNLFGLGL 324

Query:    66 I 66
             I
Sbjct:   325 I 325

GO:0000118 "histone deacetylase complex" evidence=TAS

GO:0004407 "histone deacetylase activity" evidence=TAS

GO:0005634 "nucleus" evidence=TAS

GO:0005737 "cytoplasm" evidence=TAS

GO:0008134 "transcription factor binding" evidence=TAS

GO:0016568 "chromatin modification" evidence=TAS

GO:0016575 "histone deacetylation" evidence=TAS

UNIPROTKB|F1PSI9 HDAC11 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 173 (66.0 bits), Expect = 8.6e-13, P = 8.6e-13
 Identities = 38/61 (62%), Positives = 47/61 (77%)

Query:     7 GDQVDMLE-DHLGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADLGL 65
             GD++  L     GI++RDELVF   R R+VPI+M+TSGGY K+TARIIADSILNL  +GL
Sbjct:   237 GDRLGGLSISPQGIVKRDELVFRVVRGRQVPILMVTSGGYQKRTARIIADSILNLYSVGL 296

Query:    66 I 66
             I
Sbjct:   297 I 297

GO:0005886 "plasma membrane" evidence=IEA

GO:0004407 "histone deacetylase activity" evidence=IEA

GO:0000118 "histone deacetylase complex" evidence=IEA

MGI|MGI:2385252 Hdac11 "histone deacetylase 11" [Mus musculus (taxid:10090)]

 Score = 172 (65.6 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 37/61 (60%), Positives = 46/61 (75%)

Query:     7 GDQVDMLE-DHLGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADLGL 65
             GD++  L     GI++RDE+VF   R   +PI+M+TSGGY K+TARIIADSILNL DLGL
Sbjct:   265 GDRLGGLSISPAGIVKRDEVVFRVVRAHDIPILMVTSGGYQKRTARIIADSILNLHDLGL 324

Query:    66 I 66
             I
Sbjct:   325 I 325

GO:0000118 "histone deacetylase complex" evidence=ISO;TAS

GO:0004407 "histone deacetylase activity" evidence=ISO;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;TAS

GO:0005737 "cytoplasm" evidence=TAS

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008134 "transcription factor binding" evidence=TAS

GO:0014003 "oligodendrocyte development" evidence=ISO

GO:0016568 "chromatin modification" evidence=TAS

GO:0016575 "histone deacetylation" evidence=ISO

GO:0016787 "hydrolase activity" evidence=IEA

GO:0031078 "histone deacetylase activity (H3-K14 specific)" evidence=IEA

GO:0032041 "NAD-dependent histone deacetylase activity (H3-K14 specific)" evidence=IEA

GO:0032129 "histone deacetylase activity (H3-K9 specific)" evidence=IEA

GO:0034739 "histone deacetylase activity (H4-K16 specific)" evidence=IEA

GO:0046969 "NAD-dependent histone deacetylase activity (H3-K9 specific)" evidence=IEA

GO:0046970 "NAD-dependent histone deacetylase activity (H4-K16 specific)" evidence=IEA

GO:0070932 "histone H3 deacetylation" evidence=IEA

GO:0070933 "histone H4 deacetylation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q91WA3	HDA11_MOUSE	3, ., 5, ., 1, ., 9, 8	0.68	0.7352	0.1440	yes	N/A
Q96DB2	HDA11_HUMAN	3, ., 5, ., 1, ., 9, 8	0.7551	0.7205	0.1412	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	68
cd09993	275	cd09993, HDAC_classIV, Histone deacetylase class I	2e-13
cd09301	279	cd09301, HDAC, Histone deacetylase (HDAC) classes	7e-04

>gnl|CDD|212519 cd09993, HDAC_classIV, Histone deacetylase class IV also known as histone deacetylase 11

 Score = 61.7 bits (151), Expect = 2e-13
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 9/60 (15%)

Query: 10  VDMLED----HL-----GIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNL 60
           VD+L       L     G+  RD LV   AR R +P+ M+  GGY +  AR++A     L
Sbjct: 216 VDVLAGDRLGRLSLSLEGLRERDRLVLRFARARGIPVAMVLGGGYSRDIARLVARHAQTL 275

Class IV histone deacetylases (HDAC11; EC 3.5.1.98) are predicted Zn-dependent enzymes. This class includes animal HDAC11, plant HDA2 and related bacterial deacetylases. Enzymes in this subfamily participate in regulation of a number of different processes through protein modification (deacetylation). They catalyze hydrolysis of N(6)-acetyl-lysine of histones (or other proteins) to yield a deacetylated proteins. Histone deacetylases often act as members of large multi-protein complexes such as mSin3A or SMRT/N-CoR. Human HDAC11 does not associate with them but can interact with HDAC6 in vivo. It has been suggested that HDAC11 and HDAC6 may use non-histone proteins as their substrates and play a role other than to directly modulate chromatin structure. In normal tissues, expression of HDAC11 is limited to kidney, heart, brain, skeletal muscle and testis, suggesting that its function might be tissue-specific. In mammals, HDAC11 proteins are known to be involved in progression of various tumors. HDAC11 plays an essential role in regulating OX40 ligand (OX40L) expression in Hodgkin lymphoma (HL); selective inhibition of HDAC11 expression significantly up-regulates OX40L and induces apoptosis in HL cell lines. Thus, inhibition of HDAC11 could be a therapeutic drug option for antitumor immune response in HL patients. Length = 275

>gnl|CDD|212512 cd09301, HDAC, Histone deacetylase (HDAC) classes I, II, IV and related proteins

 Score = 35.1 bits (81), Expect = 7e-04
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 18  GIIRRDELVFMKARERRVPIVMLTSGGY-LKQTARIIADSILNL 60
           G ++  E+V   AR    PI+M+  GGY  +  ARI    I  L
Sbjct: 238 GFVKLAEIVKEFAR--GGPILMVLGGGYNPEAAARIWTAIIKEL 279

The HDAC/HDAC-like family includes Zn-dependent histone deacetylase classes I, II and IV (class III HDACs, also called sirtuins, are NAD-dependent and structurally unrelated, and therefore not part of this family). Histone deacetylases catalyze hydrolysis of N(6)-acetyl-lysine residues in histone amino termini to yield a deacetylated histone (EC 3.5.1.98), as opposed to the acetylation reaction by some histone acetyltransferases (EC 2.3.1.48). Deacetylases of this family are involved in signal transduction through histone and other protein modification, and can repress/activate transcription of a number of different genes. They usually act via the formation of large multiprotein complexes. They are involved in various cellular processes, including cell cycle regulation, DNA damage response, embryonic development, cytokine signaling important for immune response and post-translational control of the acetyl coenzyme A synthetase. In mammals, they are known to be involved in progression of different tumors. Specific inhibitors of mammalian histone deacetylases are an emerging class of promising novel anticancer drugs. Length = 279

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	68
KOG1344|consensus	324		99.82
PF00850	311	Hist_deacetyl: Histone deacetylase domain; InterPr	99.0
COG0123	340	AcuC Deacetylases, including yeast histone deacety	98.89
PTZ00063	436	histone deacetylase; Provisional	98.68
PTZ00346	429	histone deacetylase; Provisional	98.62
KOG1342|consensus	425		97.06

>KOG1344|consensus

Probab=99.82  E-value=8.7e-21  Score=139.60  Aligned_cols=66  Identities=53%  Similarity=0.777  Sum_probs=64.2

Q ss_pred             CCCCCCCcc-cccCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCccchHHHHHHHHHhHHHcCCcC
Q psy8530           2 VHTWMGDQV-DMLEDHLGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLADLGLIS   67 (68)
Q Consensus         2 vD~~~~D~L-~L~lS~~Gi~~RD~~V~~~a~~~~IPva~v~gGGY~~d~~~~v~~si~~l~~~~~~~   67 (68)
                      -|+++||+| .|++|++||.+||+.||++++.++||++|+.+|||.+.++++|+.||+||+-+|||.
T Consensus       258 TDiLeGDpLG~L~ISp~Gi~~RDelVFr~~R~~~iPvvMltSGGY~K~sArvIaDSI~NL~~qGLi~  324 (324)
T KOG1344|consen  258 TDILEGDPLGNLAISPEGIIERDELVFRTFRALGIPVVMLTSGGYLKASARVIADSIVNLRLQGLIN  324 (324)
T ss_pred             CccccCCCCCCeeecccccchhhHHHHHHHHHcCCcEEEEecCceehhhhhhhHHHHHhHhhhcccC
Confidence            389999999 999999999999999999999999999999999999999999999999999999984

>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine

Probab=99.00  E-value=5.1e-10  Score=81.39  Aligned_cols=49  Identities=18%  Similarity=0.276  Sum_probs=43.1

Q ss_pred             CCCCCCCcc-cccCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCccchH
Q psy8530           2 VHTWMGDQV-DMLEDHLGIIRRDELVFMKARERRVPIVMLTSGGYLKQTA   50 (68)
Q Consensus         2 vD~~~~D~L-~L~lS~~Gi~~RD~~V~~~a~~~~IPva~v~gGGY~~d~~   50 (68)
                      .|.|.+|+| .|+||.+|..+++++|+++|.+.++|++++++|||+.+.-
T Consensus       250 ~D~~~~Dplg~~~lt~~~~~~~~~~~~~~a~~~~~~~v~vleGGY~~~~~  299 (311)
T PF00850_consen  250 FDAHAGDPLGGLNLTPEGYRELTRRLKSLAKRHCIPVVSVLEGGYNPESL  299 (311)
T ss_dssp             STTBTTSTT-SEBB-HHHHHHHHHHHHTTHSHHSGCEEEEE-S-SSHHHH
T ss_pred             cccchhccccCcCCCHHHHHHHHHHHHHHHHhcCCcEEEEECCCCChhHH
Confidence            599999999 9999999999999999999999988999999999988543

Histone deacetylases (HDA) catalyse the removal of the acetyl group. Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of this ancient protein superfamily []. HDAs function in multi-subunit complexes, reversing the acetylation of histones by histone acetyltransferases [, ], and are also believed to deacetylate general transcription factors such as TFIIF and sequence-specific transcription factors such as p53 []. Thus, HDAs contribute to the regulation of transcription, in particular transcriptional repression []. At N-terminal tails of histones, removal of the acetyl group from the epsilon-amino group of a lysine side chain will restore its positivecharge, which may stabilise the histone-DNA interaction and prevent activating transcription factors binding to promoter elements []. HDAs play important roles in the cell cycle and differentiation, and their deregulation can contribute to the development of cancer [, ]. This entry represents the structural domain found in histone deacetylases. It consists of a 3-layer(alpha-beta-alpha) sandwich.; PDB: 4A69_A 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G 3MAX_C 3MEN_D 1T64_B ....

>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.89  E-value=5.3e-09  Score=78.12  Aligned_cols=47  Identities=21%  Similarity=0.243  Sum_probs=45.7

Q ss_pred             CCCCCCCcc-cccCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCccc
Q psy8530           2 VHTWMGDQV-DMLEDHLGIIRRDELVFMKARERRVPIVMLTSGGYLKQ   48 (68)
Q Consensus         2 vD~~~~D~L-~L~lS~~Gi~~RD~~V~~~a~~~~IPva~v~gGGY~~d   48 (68)
                      +|.|.+|+| +|+||.+|...+.++|.++|+.+++|+++|++|||+.+
T Consensus       249 ~D~h~~Dpl~~~~Lt~~~~~~~~~~v~~~a~~~~~~~~~vleGGY~~~  296 (340)
T COG0123         249 FDAHRGDPLGRLNLTEEGYAKIGRAVRKLAEGYGGPVVAVLEGGYNLD  296 (340)
T ss_pred             cccCCCCccceeecCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCChH
Confidence            699999999 99999999999999999999999999999999999876

>PTZ00063 histone deacetylase; Provisional

Probab=98.68  E-value=5.2e-08  Score=75.29  Aligned_cols=42  Identities=21%  Similarity=0.360  Sum_probs=38.9

Q ss_pred             CCCCCCCcc-cccCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCcc
Q psy8530           2 VHTWMGDQV-DMLEDHLGIIRRDELVFMKARERRVPIVMLTSGGYLK   47 (68)
Q Consensus         2 vD~~~~D~L-~L~lS~~Gi~~RD~~V~~~a~~~~IPva~v~gGGY~~   47 (68)
                      +|.|.+|+| .|+||.+|..+    +++++++.++|+++++||||+.
T Consensus       260 ~D~~~~DpLg~l~Lt~~g~~~----~~~~~~~~~~pil~l~gGGY~~  302 (436)
T PTZ00063        260 ADSLTGDRLGRFNLTIKGHAA----CVEFVRSLNIPLLVLGGGGYTI  302 (436)
T ss_pred             ccccCCCCCCCcccCHHHHHH----HHHHHHhcCCCEEEEeCccCCc
Confidence            699999999 99999999876    6888899999999999999985

>PTZ00346 histone deacetylase; Provisional

Probab=98.62  E-value=1.1e-07  Score=73.45  Aligned_cols=43  Identities=21%  Similarity=0.401  Sum_probs=38.1

Q ss_pred             CCCCCCCcc-cccCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCccc
Q psy8530           2 VHTWMGDQV-DMLEDHLGIIRRDELVFMKARERRVPIVMLTSGGYLKQ   48 (68)
Q Consensus         2 vD~~~~D~L-~L~lS~~Gi~~RD~~V~~~a~~~~IPva~v~gGGY~~d   48 (68)
                      +|.|.+|+| .|+||.+|..+    +.+++++.++|+++++||||+..
T Consensus       278 ~Da~~~DpLg~l~LT~~g~~~----~~~~l~~~~~plv~vleGGY~~~  321 (429)
T PTZ00346        278 ADSLAGDRLGLLNLSSFGHGQ----CVQAVRDLGIPMLALGGGGYTIR  321 (429)
T ss_pred             ccCCCCCCCCCceeCHHHHHH----HHHHHHhcCCCEEEEeCCcCCcc
Confidence            699999999 99999999987    56666778999999999999853

>KOG1342|consensus

Probab=97.06  E-value=0.00075  Score=52.57  Aligned_cols=43  Identities=21%  Similarity=0.310  Sum_probs=37.6

Q ss_pred             CCCCCCCcc-cccCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCccc
Q psy8530           2 VHTWMGDQV-DMLEDHLGIIRRDELVFMKARERRVPIVMLTSGGYLKQ   48 (68)
Q Consensus         2 vD~~~~D~L-~L~lS~~Gi~~RD~~V~~~a~~~~IPva~v~gGGY~~d   48 (68)
                      +|-+.|||| -++||..|..+.=++|.++    |+|+.++-||||.-.
T Consensus       262 aDSL~gDRlgcFnLsi~Gh~~Cv~fvksf----n~pllvlGGGGYT~r  305 (425)
T KOG1342|consen  262 ADSLAGDRLGCFNLSIKGHAECVKFVKSF----NLPLLVLGGGGYTLR  305 (425)
T ss_pred             CccccCCccceeeecchhHHHHHHHHHHc----CCcEEEecCCccchh
Confidence            688999999 9999999999887766655    999999999999643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	68
1zz1_A	369	Histone deacetylase-like amidohydrolase; HET: SHH;	99.14
3ew8_A	388	HD8, histone deacetylase 8; hydrolase, HDAC, metal	98.72
4a69_A	376	Histone deacetylase 3,; transcription, hydrolase;	98.71
1c3p_A	375	Protein (HDLP (histone deacetylase-like protein) )	98.66
3max_A	367	HD2, histone deacetylase 2; class 2, HDAC, foot po	98.63
3men_A	362	Acetylpolyamine aminohydrolase; histone deacetylas	98.61
3q9b_A	341	Acetylpolyamine amidohydrolase; HDAC, polyamines,	98.58
2vqm_A	413	HD4, histone deacetylase 4; inhibitor, repressor,	98.38
2pqp_A	421	HD7A, histone deacetylase 7A; HDAC, structural gen	97.75

>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A*

Probab=99.14  E-value=1.5e-10  Score=85.69  Aligned_cols=60  Identities=20%  Similarity=0.140  Sum_probs=52.3

Q ss_pred             CCCCCCCcc-cccCCHHHHHHHHHHHHHHHHh-CCCCEEEEecCCCccc-hHHHHHHHHHhHH
Q psy8530           2 VHTWMGDQV-DMLEDHLGIIRRDELVFMKARE-RRVPIVMLTSGGYLKQ-TARIIADSILNLA   61 (68)
Q Consensus         2 vD~~~~D~L-~L~lS~~Gi~~RD~~V~~~a~~-~~IPva~v~gGGY~~d-~~~~v~~si~~l~   61 (68)
                      +|.|.+|+| +|+||.+|..+++++|+++|.+ .++|++++++|||+.+ ..+.+..-+.-|.
T Consensus       267 ~Da~~~DpLg~l~lt~~g~~~~~~~l~~~a~~~~~g~vv~vleGGY~~~~l~~~~~~~~~~l~  329 (369)
T 1zz1_A          267 FDASMLDPLARMMVTADGFRQMARRTIDCAADICDGRIVFVQEGGYSPHYLPFCGLAVIEELT  329 (369)
T ss_dssp             CTTBTTCTTCCCBBCHHHHHHHHHHHHHHHHHHSTTCEEEEECCCCCTTTHHHHHHHHHHHHH
T ss_pred             ccCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhCCCCEEEEECCCCCccHHHHHHHHHHHHHh
Confidence            699999999 9999999999999999999998 7999999999999977 5555555555554

>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A*

Probab=98.72  E-value=1.5e-08  Score=76.01  Aligned_cols=50  Identities=20%  Similarity=0.286  Sum_probs=42.3

Q ss_pred             CCCCCCCcc-cccCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCccchHHHHHHHHH
Q psy8530           2 VHTWMGDQV-DMLEDHLGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSIL   58 (68)
Q Consensus         2 vD~~~~D~L-~L~lS~~Gi~~RD~~V~~~a~~~~IPva~v~gGGY~~d~~~~v~~si~   58 (68)
                      +|.|.+|+| .|+||.+|..+++++|++    .++|+++++||||+...   +++|-.
T Consensus       266 ~Da~~~DpLg~l~lt~~g~~~~~~~l~~----~~~p~l~~~gGGY~~~~---var~w~  316 (388)
T 3ew8_A          266 ADTIAGDPMCSFNMTPVGIGKCLKYILQ----WQLATLILGGGGYNLAN---TARCWT  316 (388)
T ss_dssp             STTBTTCTTCCCCBCHHHHHHHHHHHHT----TCCEEEEECCCCCSHHH---HHHHHH
T ss_pred             ccCCCCCCCCCCcCCHHHHHHHHHHHHh----cCCCEEEEECCCCChhH---HHHHHH
Confidence            699999999 999999999999999875    48999999999997543   355443

>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens}

Probab=98.71  E-value=1.9e-08  Score=74.99  Aligned_cols=52  Identities=17%  Similarity=0.157  Sum_probs=42.4

Q ss_pred             CCCCCCCcc-cccCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCccchHHHHHHHHHhH
Q psy8530           2 VHTWMGDQV-DMLEDHLGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNL   60 (68)
Q Consensus         2 vD~~~~D~L-~L~lS~~Gi~~RD~~V~~~a~~~~IPva~v~gGGY~~d~~~~v~~si~~l   60 (68)
                      +|.|.+|+| +|+||.+|..++.+    ++++.++|+++++||||+.+   .+++|...+
T Consensus       258 ~Da~~~DpLg~l~Lt~~g~~~~~~----~l~~~~~p~v~v~eGGY~~~---~var~w~~~  310 (376)
T 4a69_A          258 ADSLGCDRLGCFNLSIRGHGECVE----YVKSFNIPLLVLGGGGYTVR---NVARCWTYE  310 (376)
T ss_dssp             GGGBTTCSSCCCBBCHHHHHHHHH----HHHTTCCCEEEECCCCCSHH---HHHHHHHHH
T ss_pred             ccCCCCCcccCeecCHHHHHHHHH----HHHHcCCCEEEEECCCCChh---HHHHHHHHH
Confidence            599999999 99999999998865    45667999999999999753   255555443

>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A*

Probab=98.66  E-value=6.4e-08  Score=71.79  Aligned_cols=42  Identities=17%  Similarity=0.184  Sum_probs=39.0

Q ss_pred             CCCCCCCcc-cccCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCcc
Q psy8530           2 VHTWMGDQV-DMLEDHLGIIRRDELVFMKARERRVPIVMLTSGGYLK   47 (68)
Q Consensus         2 vD~~~~D~L-~L~lS~~Gi~~RD~~V~~~a~~~~IPva~v~gGGY~~   47 (68)
                      +|.|.+|+| +|+||.+|..++.++|.++|    .|++++++|||+.
T Consensus       257 ~Da~~~DpLg~l~lt~~g~~~~~~~l~~~a----~~vv~vleGGY~~  299 (375)
T 1c3p_A          257 TDPLLEDYLSKFNLSNVAFLKAFNIVREVF----GEGVYLGGGGYHP  299 (375)
T ss_dssp             STTBTTCTTCSCCBCHHHHHHHHHHHHHHH----CSCEEECCCCCCH
T ss_pred             ccccCCCCCCCcccCHHHHHHHHHHHHHhc----cceEEEECCCCCh
Confidence            699999999 99999999999999999886    5799999999964

>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens}

Probab=98.63  E-value=3.1e-08  Score=73.76  Aligned_cols=50  Identities=20%  Similarity=0.291  Sum_probs=41.2

Q ss_pred             CCCCCCCcc-cccCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCccchHHHHHHHHH
Q psy8530           2 VHTWMGDQV-DMLEDHLGIIRRDELVFMKARERRVPIVMLTSGGYLKQTARIIADSIL   58 (68)
Q Consensus         2 vD~~~~D~L-~L~lS~~Gi~~RD~~V~~~a~~~~IPva~v~gGGY~~d~~~~v~~si~   58 (68)
                      +|.|.+|+| .|+||.+|..++    .+++++.++|+++++||||+..   .+++|..
T Consensus       257 ~D~~~~Dplg~~~lt~~g~~~~----~~~~~~~~~p~v~~~eGGY~~~---~var~wt  307 (367)
T 3max_A          257 ADSLSGDRLGCFNLTVKGHAKC----VEVVKTFNLPLLMLGGGGYTIR---NVARCWT  307 (367)
T ss_dssp             GGGBTTCSSCCCCBCHHHHHHH----HHHHHTTCCCEEEECCCCCSHH---HHHHHHH
T ss_pred             ccCcCCCCCCCeeeCHHHHHHH----HHHHHhcCCCEEEEeCCCCChh---HHHHHHH
Confidence            599999999 999999999875    4566778999999999999753   3555543

>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B}

Probab=98.61  E-value=9e-08  Score=71.27  Aligned_cols=43  Identities=21%  Similarity=0.298  Sum_probs=39.0

Q ss_pred             CCCCCCCcc-cccCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCccc
Q psy8530           2 VHTWMGDQV-DMLEDHLGIIRRDELVFMKARERRVPIVMLTSGGYLKQ   48 (68)
Q Consensus         2 vD~~~~D~L-~L~lS~~Gi~~RD~~V~~~a~~~~IPva~v~gGGY~~d   48 (68)
                      +|.|.+|+| .|+||.+|..+    +.+++++.++|++++++|||+.+
T Consensus       301 ~Da~~~Dplg~l~lt~~~~~~----~~~~l~~~~~~~v~vleGGY~~~  344 (362)
T 3men_A          301 FDVYRDDPQSQVAVTTDGFGR----LGHLIGALRLPTVIVQEGGYHIE  344 (362)
T ss_dssp             STTBTTCTTCCBCBCHHHHHH----HHHHHHTTCCCEEEEECCCCCHH
T ss_pred             ccCcCCCCCCCccCCHHHHHH----HHHHHHhhCCCEEEEECCCCCHH
Confidence            699999999 99999999987    67778888999999999999754

>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A*

Probab=98.58  E-value=1e-07  Score=70.38  Aligned_cols=44  Identities=20%  Similarity=0.250  Sum_probs=39.6

Q ss_pred             CCCCCCCcc-cccCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCccch
Q psy8530           2 VHTWMGDQV-DMLEDHLGIIRRDELVFMKARERRVPIVMLTSGGYLKQT   49 (68)
Q Consensus         2 vD~~~~D~L-~L~lS~~Gi~~RD~~V~~~a~~~~IPva~v~gGGY~~d~   49 (68)
                      +|.|.+|+| .|+||.+|..+    +.+++++.++|++++++|||+.+.
T Consensus       283 ~D~~~~Dplg~~~lt~~~~~~----~~~~l~~~~~~~v~vleGGY~~~~  327 (341)
T 3q9b_A          283 VDTFEQDPISFFKLTSPDYIT----MGRTIAASGVPLLVVMEGGYGVPE  327 (341)
T ss_dssp             CTTBTTCTTCCCBBCTTHHHH----HHHHHHTTSSCEEEEECCCCCCTT
T ss_pred             ccccCCCCCCCccCCHHHHHH----HHHHHHHhCCCEEEEECCCCChHH
Confidence            699999999 99999999987    677778889999999999998763

>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A*

Probab=98.38  E-value=3.6e-07  Score=68.37  Aligned_cols=43  Identities=14%  Similarity=-0.042  Sum_probs=39.3

Q ss_pred             CCCCCC--Ccc-cccCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCcc
Q psy8530           2 VHTWMG--DQV-DMLEDHLGIIRRDELVFMKARERRVPIVMLTSGGYLK   47 (68)
Q Consensus         2 vD~~~~--D~L-~L~lS~~Gi~~RD~~V~~~a~~~~IPva~v~gGGY~~   47 (68)
                      +|.|++  |+| +|+||.+|...+.++|.+.|   +.|++++++|||+-
T Consensus       289 ~Da~~~d~D~lg~~~lt~~~~~~~~~~l~~~a---~~~~v~vleGGY~~  334 (413)
T 2vqm_A          289 FDAVEGHPTPLGGYNLSARCFGYLTKQLMGLA---GGRIVLALEGGHDL  334 (413)
T ss_dssp             CTTBSSCTTTTCCCCBCHHHHHHHHHHHHTSG---GGCEEEEECCCCCH
T ss_pred             hhhcCCCCCCCCCcccCHHHHHHHHHHHHHhc---CCCEEEEeCcCCCh
Confidence            599998  679 99999999999999999886   68999999999964

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	68
d3c10a1	386	Histone deacetylase 7, HDAC7 {Human (Homo sapiens)	98.76
d1c3pa_	372	HDAC homologue {Aquifex aeolicus [TaxId: 63363]}	98.65
d1t64a_	364	Histone deacetylase 8, HDAC8 {Human (Homo sapiens)	98.61
d1biaa1	63	Biotin repressor, N-terminal domain {Escherichia c	89.78
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	83.71
d1mx3a2	133	Transcription corepressor CtbP {Human (Homo sapien	81.11

>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Histone deacetylase, HDAC
domain: Histone deacetylase 7, HDAC7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=3.1e-09  Score=76.44  Aligned_cols=57  Identities=11%  Similarity=-0.001  Sum_probs=45.4

Q ss_pred             CCCCCCC--cc-cccCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCcc-chHHHHHHHHHhHH
Q psy8530           2 VHTWMGD--QV-DMLEDHLGIIRRDELVFMKARERRVPIVMLTSGGYLK-QTARIIADSILNLA   61 (68)
Q Consensus         2 vD~~~~D--~L-~L~lS~~Gi~~RD~~V~~~a~~~~IPva~v~gGGY~~-d~~~~v~~si~~l~   61 (68)
                      +|.|.+|  +| +|+||.+|...++++|+++|   +.|++++++|||+- ...+-++..+..|.
T Consensus       286 ~D~~~~D~~pLg~l~lt~~~~~~~~~~l~~~~---~~~vv~vleGGY~~~~l~~~~~~~~~~l~  346 (386)
T d3c10a1         286 FDAAEGHPAPLGGYHVSAKCFGYMTQQLMNLA---GGAVVLALEGGHDLTAICDASEACVAALL  346 (386)
T ss_dssp             CTTBTTCCGGGCCCBBCHHHHHHHHHHHTTSG---GGCEEEEECSCCCHHHHHHHHHHHHHHHH
T ss_pred             ccccccCcchhhcCccCHHHHHHHHHHHHHHc---CCCEEEEeCCCCChhHHHHHHHHHHHHHh
Confidence            6999999  79 99999999999999999876   68999999999974 33333444444443

>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Histone deacetylase, HDAC
domain: HDAC homologue
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.65  E-value=2.4e-08  Score=71.88  Aligned_cols=43  Identities=16%  Similarity=0.166  Sum_probs=39.9

Q ss_pred             CCCCCCCcc-cccCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCccc
Q psy8530           2 VHTWMGDQV-DMLEDHLGIIRRDELVFMKARERRVPIVMLTSGGYLKQ   48 (68)
Q Consensus         2 vD~~~~D~L-~L~lS~~Gi~~RD~~V~~~a~~~~IPva~v~gGGY~~d   48 (68)
                      +|.|.+|+| .|+||.+|..++.++|.+.+    .|+++|+||||+.+
T Consensus       256 ~D~~~~Dplg~l~lt~~~~~~~~~~~~~~~----~~~~~vleGGY~~~  299 (372)
T d1c3pa_         256 TDPLLEDYLSKFNLSNVAFLKAFNIVREVF----GEGVYLGGGGYHPY  299 (372)
T ss_dssp             STTBTTCTTCSCCBCHHHHHHHHHHHHHHH----CSCEEECCCCCCHH
T ss_pred             cccCCcCcccCCcCCHHHHHHHHHHHHHhC----CCeEEEEcCCCcHH
Confidence            699999999 99999999999999998875    89999999999765

>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Histone deacetylase, HDAC
domain: Histone deacetylase 8, HDAC8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=2.8e-08  Score=71.64  Aligned_cols=44  Identities=20%  Similarity=0.321  Sum_probs=39.7

Q ss_pred             CCCCCCCcc-cccCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCccch
Q psy8530           2 VHTWMGDQV-DMLEDHLGIIRRDELVFMKARERRVPIVMLTSGGYLKQT   49 (68)
Q Consensus         2 vD~~~~D~L-~L~lS~~Gi~~RD~~V~~~a~~~~IPva~v~gGGY~~d~   49 (68)
                      +|.|.+|+| .|+||.+|..++.++|+++    ++|+++++||||+.+.
T Consensus       253 ~D~~~~Dplg~~~lt~~g~~~~~~~l~~~----~~p~~~~~~GGY~~~~  297 (364)
T d1t64a_         253 ADTIAGDPMCSFNMTPVGIGKCLKYILQW----QLATLILGGGGYNLAN  297 (364)
T ss_dssp             STTBTTCTTCCCCBCHHHHHHHHHHHHTT----CCEEEEECCCCCSHHH
T ss_pred             ccCCCCCCCCCCcCCHHHHHHHHHHHHhc----CCCEEEEECCCCCHHH
Confidence            699999999 9999999999999999764    7999999999996543

>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Biotin repressor-like
domain: Biotin repressor, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.78  E-value=0.064  Score=28.82  Aligned_cols=38  Identities=18%  Similarity=0.312  Sum_probs=30.3

Q ss_pred             CCCCcc--cccCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCc
Q psy8530           5 WMGDQV--DMLEDHLGIIRRDELVFMKARERRVPIVMLTSGGYL   46 (68)
Q Consensus         5 ~~~D~L--~L~lS~~Gi~~RD~~V~~~a~~~~IPva~v~gGGY~   46 (68)
                      +.+.+|  .|++|...|+++    ++..++.|+|+..+-|-||.
T Consensus        20 ~s~~eLa~~l~vS~~ti~r~----i~~L~~~G~~I~~~~g~GY~   59 (63)
T d1biaa1          20 HSGEQLGETLGMSRAAINKH----IQTLRDWGVDVFTVPGKGYS   59 (63)
T ss_dssp             BCHHHHHHHHTSCHHHHHHH----HHHHHHTTCCCEEETTTEEE
T ss_pred             CCHHHHHHHHCcCHHHHHHH----HHHHHHCCCcEEEeCCCeEE
Confidence            445667  899999998765    45667799999998888994

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=83.71  E-value=0.87  Score=26.92  Aligned_cols=39  Identities=13%  Similarity=0.250  Sum_probs=28.0

Q ss_pred             HHHHHHHhCCCCEEEEecCCCccchH--HHHHHHHHhHHHc
Q psy8530          25 LVFMKARERRVPIVMLTSGGYLKQTA--RIIADSILNLADL   63 (68)
Q Consensus        25 ~V~~~a~~~~IPva~v~gGGY~~d~~--~~v~~si~~l~~~   63 (68)
                      -+++.|.+.|++-++++++||+...+  ...+.-+..+.++
T Consensus        79 ~~~~~~~~~g~~~~vi~s~Gf~e~~~~~~~~~~~l~~~a~~  119 (129)
T d2csua1          79 DTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHK  119 (129)
T ss_dssp             HHHHHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEEecccccccchhhHHHHHHHHHHHHH
Confidence            47899999999999999999986432  2333445555544

>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=81.11  E-value=0.79  Score=27.58  Aligned_cols=37  Identities=5%  Similarity=-0.032  Sum_probs=26.4

Q ss_pred             HHHHHHHHhCCCCEEEEecCCCccchHHHHHHHHHhHHH
Q psy8530          24 ELVFMKARERRVPIVMLTSGGYLKQTARIIADSILNLAD   62 (68)
Q Consensus        24 ~~V~~~a~~~~IPva~v~gGGY~~d~~~~v~~si~~l~~   62 (68)
                      ..=+++|+++|||+..+  .||+...++..-..|..+..
T Consensus        78 ~iD~~~~~~~gI~v~n~--p~~~~~vAE~a~~lil~~~R  114 (133)
T d1mx3a2          78 NIDIKSAGDLGIAVCNV--PAASVYSEQASIEMREEAAR  114 (133)
T ss_dssp             TBCHHHHHHTTCEEECC--CSTTHCCHHHHHHHHHHHHH
T ss_pred             cEeeeeheeCCEEEEcC--CCCCchhHHHHHHHHHHHHh
Confidence            34478999999987764  45777777777666666654