Psyllid ID: psy8550

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330--
Protein Sequence
SQPTRKYVKRKVQGQLDEIFWIDILDVTYILYKLHPGFQNNPKSNFKSPTEILKSLLIIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHWI
Secondary Structure (PSIPRED)
ccHHHHHHHHHHccccccEEEEEEHHHEHHHHHccccccccccccccccccccccEEEcccccccccccHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccEEcccccEEEccccccccccccccccccEEEccccccccccHHHcccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEccccccccccccccccccccccEEEcccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHcccEEEccHHHHHHHHHHHHHHHHHHccccccccccccHHHccHHccccccccHHHcccHcccEEEccccccccccHHHHHHHHHHHHHHHccccccccccHHHccccccEEEEccccccccccccccccccEEEccccccccccHHHcccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccEEccccccccccccEEEcccccccEEccccccccccccEEEccccccccccHHHHcccccccEEEccccccccccHHHHcccHHHccc
Coil and Loop (DISEMBL)
SQPTRKYVKRKVQGQLDEIFWIDILDVTYILYklhpgfqnnpksnfkspTEILKSLLIIPFEVRILNKLRIFIndsvlfssvsdITMWSLLVTTALLLLVHQasafcppdcdcndetlvvtckeanldvipitlnpsIQRLVLKYNRIKTVDSAIQFYSSLQhvdlshnqlvnipirgfepQEKLVELQLNhnklssvnnktfiglkSLKVLNLRgnfledlpdrlfaplshleeldlgqNRISRIDQACFEGLTALRILylddnqlrsvptpsfIYLGMLAELRVGLNVFttladgafnglgRLSALDLRgagltnmmghsmalgdylhwi
Flexible Loop (DISEMBL)
sqptrkyvkrkvqgqldeifwIDILDVTYILYKLHPGFQNNPKSNFKSPTEILKSLLIIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKEanldvipitlnpsiQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNklssvnnktfiglKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHWI
Low Complexity Region (SEG)
SQPTRKYVKRKVQGQLDEIFWIDILDVTYILYKLHPGFQNNPKSNFKSPTEILKSLLIIPFEVRILNKLRIFINDSVLFSSVSDITMWSllvttallllvHQASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHWI
Disordered region (IsUnstruct)
*********RKVQGQLDEIFWIDILDVTYILYKLHPGFQN*****FKSPTEILKSLLIIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHW*
Disordered Region (DISOPRED)
******Y***KVQGQLDEIFWIDILDVTYILYKLHPGFQNNPKSNFKSPTEILKSLLIIPFEVRIL***************VSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHWI
Disordered Region (DISEMBL)
SQPTRKYVKRKVQGQLDEIFWIDILDVTYILYKLHPGFQNNPKSNFKSPTEILKSLLIIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHWI
Disordered Region (DISPRO)
**PTRKYVKRKVQGQLDEIFWIDILDVTYILYKLHPGFQNNPKSNFKSPTEILKSLLIIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDY***I
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
SQPTRKYVKRKVQGQLDEIFWIDILDVTYILYKLHPGFQNNPKSNFKSPTEILKSLLIIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHWI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	332	2.2.26 [Sep-21-2011]
Q149C3	593	Leucine-rich repeat and i	yes	N/A	0.614	0.344	0.326	1e-19
O43300	516	Leucine-rich repeat trans	yes	N/A	0.611	0.393	0.323	2e-19
P70389	603	Insulin-like growth facto	no	N/A	0.563	0.310	0.340	4e-19
P35858	605	Insulin-like growth facto	no	N/A	0.629	0.345	0.344	7e-19
D4A7P2	515	Leucine-rich repeat trans	no	N/A	0.611	0.394	0.318	9e-19
Q8BGA3	515	Leucine-rich repeat trans	no	N/A	0.611	0.394	0.318	1e-18
Q6UY18	593	Leucine-rich repeat and i	no	N/A	0.614	0.344	0.317	2e-18
Q9BXB1	951	Leucine-rich repeat-conta	no	N/A	0.587	0.205	0.324	3e-18
O02833	605	Insulin-like growth facto	N/A	N/A	0.566	0.310	0.333	3e-18
Q9Z2H4	951	Leucine-rich repeat-conta	no	N/A	0.587	0.205	0.324	3e-18

>sp|Q149C3|LIGO4_MOUSE Leucine-rich repeat and immunoglobulin-like domain containing-NOGO receptor-interacting protein 4 OS=Mus musculus GN=Lingo4 PE=2 SV=2

 Score = 97.4 bits (241), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/205 (32%), Positives = 98/205 (47%), Gaps = 1/205 (0%)

Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSA-IQFYSSLQHVD 165
           CP  CDC  +T  V C    LD IP  L    + L L  NR+  +    +     LQ +D
Sbjct: 31  CPTVCDCTSQTRAVFCAHRRLDTIPGGLPLDTELLDLSGNRLWGLQRGMLSRLGQLQELD 90

Query: 166 LSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDR 225
           LS+NQL  +    F   + L+ L+L  N+L  V    F GL +L +L+LR N +    D 
Sbjct: 91  LSYNQLSTLEPGAFHGLQSLLTLRLQGNRLRIVGPGIFSGLTALTLLDLRLNQIVLFLDG 150

Query: 226 LFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELR 285
            F+ L  L++L++G N +  +    F GL  L  + L+   L +VP  +   L  L  LR
Sbjct: 151 AFSELGSLQQLEVGDNHLVFVAPGAFAGLAKLSTITLERCNLSTVPGLALAQLPALVALR 210

Query: 286 VGLNVFTTLADGAFNGLGRLSALDL 310
           +       L  GA  GLG+L  L++
Sbjct: 211 LRELDIERLPAGALRGLGQLKELEI 235

Mus musculus (taxid: 10090)

>sp|O43300|LRRT2_HUMAN Leucine-rich repeat transmembrane neuronal protein 2 OS=Homo sapiens GN=LRRTM2 PE=2 SV=3

 Score = 96.7 bits (239), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 104/232 (44%), Gaps = 29/232 (12%)

Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQF--YSSLQHV 164
           CPP C C  E L+  C       +P   +     L L++N I  ++   QF  +S L  +
Sbjct: 34  CPPKCRC--EKLLFYCDSQGFHSVPNATDKGSLGLSLRHNHITELERD-QFASFSQLTWL 90

Query: 165 DLSHNQLVNIPIRGFEPQEKLVELQLNHNK------------------------LSSVNN 200
            L HNQ+  +    F+   KL EL L+ NK                        LSS++ 
Sbjct: 91  HLDHNQISTVKEDAFQGLYKLKELILSSNKIFYLPNTTFTQLINLQNLDLSFNQLSSLHP 150

Query: 201 KTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRIL 260
           + F GL+ L+ L+LR N L  +P RLF     LE LDL  NR+  + +  F GL  LR L
Sbjct: 151 ELFYGLRKLQTLHLRSNSLRTIPVRLFWDCRSLEFLDLSTNRLRSLARNGFAGLIKLREL 210

Query: 261 YLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG 312
           +L+ NQL  +    F+ L  L  L +  N  + L  G     G L  LDL G
Sbjct: 211 HLEHNQLTKINFAHFLRLSSLHTLFLQWNKISNLTCGMEWTWGTLEKLDLTG 262

Involved in the development and maintenance of excitatory synapse in the vertebrate nervous system. Regulates surface expression of AMPA receptors. Acts as a ligand for the presynaptic receptors NRXN1-A and NRXN1-B.

Homo sapiens (taxid: 9606)

>sp|P70389|ALS_MOUSE Insulin-like growth factor-binding protein complex acid labile subunit OS=Mus musculus GN=Igfals PE=2 SV=1

 Score = 95.9 bits (237), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 98/188 (52%), Gaps = 1/188 (0%)

Query: 138 IQRLVLKYNRIKTVDSAIQFY-SSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLS 196
           ++ L L  N +++V + +  +   LQ + L  N +  +  R F   + L  L L+HN+++
Sbjct: 220 LRELDLSRNALRSVKANVFIHLPRLQKLYLDRNLITAVAPRAFLGMKALRWLDLSHNRVA 279

Query: 197 SVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTA 256
            +   TF GL  L VL L  N +  L  R F  L  LEEL LG NRI ++ +  FEGL  
Sbjct: 280 GLLEDTFPGLLGLHVLRLAHNAITSLRPRTFKDLHFLEELQLGHNRIRQLGEKTFEGLGQ 339

Query: 257 LRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT 316
           L +L L+DNQ+  V   +F  L  +A + +  N   +L +  F GLGRL +L L  + L 
Sbjct: 340 LEVLTLNDNQIHEVKVGAFFGLFNVAVMNLSGNCLRSLPEHVFQGLGRLHSLHLEHSCLG 399

Query: 317 NMMGHSMA 324
            +  H+ A
Sbjct: 400 RIRLHTFA 407

May have an important role in regulating the access of circulating IGFs to the tissues.

Mus musculus (taxid: 10090)

>sp|P35858|ALS_HUMAN Insulin-like growth factor-binding protein complex acid labile subunit OS=Homo sapiens GN=IGFALS PE=1 SV=1

 Score = 95.1 bits (235), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 83/241 (34%), Positives = 109/241 (45%), Gaps = 32/241 (13%)

Query: 107 CPPDCDC----NDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTV-DSAIQFYSSL 161
           CP  C C    + + L V C   NL  +P  +    Q L L  N + +V  +A Q  SSL
Sbjct: 41  CPAACVCSYDDDADELSVFCSSRNLTRLPDGVPGGTQALWLDGNNLSSVPPAAFQNLSSL 100

Query: 162 Q------------------------HVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSS 197
                                    H+ L  NQL ++ +  F     L  L L++N+LS 
Sbjct: 101 GFLNLQGGQLGSLEPQALLGLENLCHLHLERNQLRSLALGTFAHTPALASLGLSNNRLSR 160

Query: 198 VNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTAL 257
           + +  F GL SL  LNL  N L  LPD  F  L  L EL L  NR++ +  A F GL  L
Sbjct: 161 LEDGLFEGLGSLWDLNLGWNSLAVLPDAAFRGLGSLRELVLAGNRLAYLQPALFSGLAEL 220

Query: 258 RILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDL---RGAG 314
           R L L  N LR++    F+ L  L +L +  N+   +A GAF GL  L  LDL   R AG
Sbjct: 221 RELDLSRNALRAIKANVFVQLPRLQKLYLDRNLIAAVAPGAFLGLKALRWLDLSHNRVAG 280

Query: 315 L 315
           L
Sbjct: 281 L 281

Involved in protein-protein interactions that result in protein complexes, receptor-ligand binding or cell adhesion.

Homo sapiens (taxid: 9606)

>sp|D4A7P2|LRRT2_RAT Leucine-rich repeat transmembrane neuronal protein 2 OS=Rattus norvegicus GN=Lrrtm2 PE=1 SV=1

 Score = 94.7 bits (234), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 103/232 (44%), Gaps = 29/232 (12%)

Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQF--YSSLQHV 164
           CPP C C  E L+  C       +P   +     L L++N I  ++   QF  +S L  +
Sbjct: 34  CPPKCRC--EKLLFYCDSQGFHSVPNATDKGSLGLSLRHNHITALERD-QFASFSQLTWL 90

Query: 165 DLSHNQLVNIPIRGFEPQEKLVELQLNHNK------------------------LSSVNN 200
            L HNQ+  +    F+   KL EL L+ NK                        LSS++ 
Sbjct: 91  HLDHNQISTVKEDAFQGLYKLKELILSSNKIFYLPNTTFTQLINLQNLDLSFNQLSSLHP 150

Query: 201 KTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRIL 260
           + F GL+ L+ L+LR N L  +P RLF     LE LDL  NR+  + +  F GL  LR L
Sbjct: 151 ELFYGLRKLQTLHLRSNSLRTIPVRLFWDCRSLEFLDLSTNRLRSLARNGFAGLIKLREL 210

Query: 261 YLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG 312
           +L+ NQL  +    F+ L  L  L +  N  + L  G       L  LDL G
Sbjct: 211 HLEHNQLTKINFAHFLRLSSLHTLFLQWNKISNLTCGMEWTWSTLEKLDLTG 262

Involved in the development and maintenance of excitatory synapse in the vertebrate nervous system. Regulates surface expression of AMPA receptors. Acts as a ligand for the presynaptic receptors NRXN1-A and NRXN1-B.

Rattus norvegicus (taxid: 10116)

>sp|Q8BGA3|LRRT2_MOUSE Leucine-rich repeat transmembrane neuronal protein 2 OS=Mus musculus GN=Lrrtm2 PE=2 SV=1

 Score = 94.4 bits (233), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 103/232 (44%), Gaps = 29/232 (12%)

Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQF--YSSLQHV 164
           CPP C C  E L+  C       +P   +     L L++N I  ++   QF  +S L  +
Sbjct: 34  CPPKCRC--EKLLFYCDSQGFHSVPNATDKGSLGLSLRHNHITALERD-QFASFSQLTWL 90

Query: 165 DLSHNQLVNIPIRGFEPQEKLVELQLNHNK------------------------LSSVNN 200
            L HNQ+  +    F+   KL EL L+ NK                        LSS++ 
Sbjct: 91  HLDHNQISTVKEDAFQGLYKLKELILSSNKIFYLPNTTFTQLINLQNLDLSFNQLSSLHP 150

Query: 201 KTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRIL 260
           + F GL+ L+ L+LR N L  +P RLF     LE LDL  NR+  + +  F GL  LR L
Sbjct: 151 ELFYGLRKLQTLHLRSNSLRTIPVRLFWDCRSLEFLDLSTNRLRSLARNGFAGLIKLREL 210

Query: 261 YLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG 312
           +L+ NQL  +    F+ L  L  L +  N  + L  G       L  LDL G
Sbjct: 211 HLEHNQLTKINFAHFLRLSSLHTLFLQWNKISNLTCGMDWTWSTLEKLDLTG 262

Involved in the development and maintenance of excitatory synapse in the vertebrate nervous system. Regulates surface expression of AMPA receptors. Acts as a ligand for the presynaptic receptors NRXN1-A and NRXN1-B.

Mus musculus (taxid: 10090)

>sp|Q6UY18|LIGO4_HUMAN Leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 4 OS=Homo sapiens GN=LINGO4 PE=2 SV=1

 Score = 93.6 bits (231), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 97/205 (47%), Gaps = 1/205 (0%)

Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSA-IQFYSSLQHVD 165
           CP  CDC  +   V C    L+ +P  L    + L L  NR+  +    +   S LQ +D
Sbjct: 31  CPAVCDCTSQPQAVLCGHRQLEAVPGGLPLDTELLDLSGNRLWGLQQGMLSRLSLLQELD 90

Query: 166 LSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDR 225
           LS+NQL  +    F   + L+ L+L  N+L  +    F GL +L +L+LR N +    D 
Sbjct: 91  LSYNQLSTLEPGAFHGLQSLLTLRLQGNRLRIMGPGVFSGLSALTLLDLRLNQIVLFLDG 150

Query: 226 LFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELR 285
            F  L  L++L++G N +  +    F GL  L  L L+   L +VP  +   L  L  LR
Sbjct: 151 AFGELGSLQKLEVGDNHLVFVAPGAFAGLAKLSTLTLERCNLSTVPGLALARLPALVALR 210

Query: 286 VGLNVFTTLADGAFNGLGRLSALDL 310
           +       L  GA  GLG+L  L++
Sbjct: 211 LRELDIGRLPAGALRGLGQLKELEI 235

Homo sapiens (taxid: 9606)

>sp|Q9BXB1|LGR4_HUMAN Leucine-rich repeat-containing G-protein coupled receptor 4 OS=Homo sapiens GN=LGR4 PE=2 SV=2

 Score = 93.2 bits (230), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 94/219 (42%), Gaps = 24/219 (10%)

Query: 103 ASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQ 162
           A   C   C C D    V C    L  +P  L+   Q L                     
Sbjct: 25  APPLCAAPCSC-DGDRRVDCSGKGLTAVPEGLSAFTQAL--------------------- 62

Query: 163 HVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDL 222
             D+S N +  +P   F+    L ELQL  N LS ++ K   GLK LKVL L+ N L+ +
Sbjct: 63  --DISMNNITQLPEDAFKNFPFLEELQLAGNDLSFIHPKALSGLKELKVLTLQNNQLKTV 120

Query: 223 PDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLA 282
           P      LS L+ L L  N I+ + +  FEGL  LR L+LDDN L  VP      L  L 
Sbjct: 121 PSEAIRGLSALQSLRLDANHITSVPEDSFEGLVQLRHLWLDDNSLTEVPVHPLSNLPTLQ 180

Query: 283 ELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGH 321
            L + LN  +++ D AF  L  L  L L    + ++  H
Sbjct: 181 ALTLALNKISSIPDFAFTNLSSLVVLHLHNNKIRSLSQH 219

Orphan receptor.

Homo sapiens (taxid: 9606)

>sp|O02833|ALS_PAPHA Insulin-like growth factor-binding protein complex acid labile subunit OS=Papio hamadryas GN=IGFALS PE=2 SV=1

 Score = 93.2 bits (230), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/213 (33%), Positives = 105/213 (49%), Gaps = 25/213 (11%)

Query: 137 SIQRLVLKYNRIKTVDSAI-QFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKL 195
            ++ LVL  NR+  +  A+    + L+ +DLS N L  I    F    +L +L L+ N +
Sbjct: 195 GLRELVLAGNRLAYLQPALFSGLAELRELDLSRNALRAIKANVFAQLPRLQKLYLDRNLI 254

Query: 196 SSVNNKTFIGLKSLKVLNLRGN----FLED--------------------LPDRLFAPLS 231
           ++V    F+GLK+L+ L+L  N     LED                    L  R F  L 
Sbjct: 255 AAVAPGAFLGLKALRWLDLSHNRVAGLLEDTFPGLLGLRVLRLSHNAIASLRPRTFEDLH 314

Query: 232 HLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVF 291
            LEEL LG NRI ++ +  FEGL  L +L LD NQL+ V   +F+ L  +A + +  N  
Sbjct: 315 FLEELQLGHNRIRQLAERSFEGLGQLEVLTLDHNQLQEVKVGAFLGLTNVAVMNLSGNCL 374

Query: 292 TTLADGAFNGLGRLSALDLRGAGLTNMMGHSMA 324
             L +  F GLG+L +L L G+ L  +  H+ A
Sbjct: 375 RNLPEQVFRGLGKLHSLHLEGSCLGRIRPHTFA 407

Involved in protein-protein interactions that result in protein complexes, receptor-ligand binding or cell adhesion.

Papio hamadryas (taxid: 9557)

>sp|Q9Z2H4|LGR4_RAT Leucine-rich repeat-containing G-protein coupled receptor 4 OS=Rattus norvegicus GN=Lgr4 PE=2 SV=1

 Score = 92.8 bits (229), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 93/219 (42%), Gaps = 24/219 (10%)

Query: 103 ASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQ 162
           A   C   C C D    V C    L  +P  L+   Q L                     
Sbjct: 25  APPLCAAPCSC-DGDRRVDCSGKGLTAVPEGLSAFTQAL--------------------- 62

Query: 163 HVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDL 222
             D+S N +  +P   F+    L ELQL  N LS ++ K   GLK LKVL L+ N L  +
Sbjct: 63  --DISMNNITQLPEDAFKSFPFLEELQLAGNDLSLIHPKALSGLKELKVLTLQNNQLRTV 120

Query: 223 PDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLA 282
           P      LS L+ L L  N I+ + +  FEGL  LR L+LDDN L  VP      L  L 
Sbjct: 121 PSEAIHGLSALQSLRLDANHITSVPEDSFEGLVQLRHLWLDDNSLTEVPVRPLSNLPTLQ 180

Query: 283 ELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGH 321
            L + LN  +++ D AF  L  L  L L    + ++  H
Sbjct: 181 ALTLALNNISSIPDFAFTNLSSLVVLHLHNNKIKSLSQH 219

Orphan receptor.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	332
328696893	628	PREDICTED: insulin-like growth factor-bi	0.707	0.374	0.666	5e-88
242007469	544	tartan protein, putative [Pediculus huma	0.725	0.443	0.621	8e-80
270007914	536	hypothetical protein TcasGA2_TC014658 [T	0.650	0.402	0.675	3e-75
91083775	586	PREDICTED: similar to leucine-rich repea	0.650	0.368	0.675	9e-75
307207257	786	Leucine-rich repeats and immunoglobulin-	0.653	0.276	0.605	6e-67
345493135	568	PREDICTED: insulin-like growth factor-bi	0.704	0.411	0.573	8e-67
322799077	556	hypothetical protein SINV_04557 [Solenop	0.716	0.428	0.570	1e-66
110750681	755	PREDICTED: slit homolog 1 protein-like [	0.701	0.308	0.559	1e-65
332017189	760	Leucine-rich repeat neuronal protein 2 [	0.665	0.290	0.594	2e-65
170043786	716	leucine-rich repeat-containing protein 4	0.656	0.304	0.568	1e-64

>gi|328696893|ref|XP_003240168.1| PREDICTED: insulin-like growth factor-binding protein complex acid labile subunit-like [Acyrthosiphon pisum]

 Score =  330 bits (846), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 162/243 (66%), Positives = 193/243 (79%), Gaps = 8/243 (3%)

Query: 78  LFSSVSDITMWSL--LVTTALLLLVHQASAFCPPDCDCNDETLVVTCKEANLDVIPITLN 135
           +F++      W+L  L  TA++       A CP +C C+D+TLVV CKE NLDVIPITLN
Sbjct: 1   MFATNRVSATWALTILAVTAMI------RAHCPSNCSCDDDTLVVLCKEGNLDVIPITLN 54

Query: 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKL 195
           PSIQRL+L YNRIK VD++ QFY +LQ+VD+SHN LVNIP +GFE QEKLVEL LNHNK+
Sbjct: 55  PSIQRLMLMYNRIKIVDASFQFYGALQYVDISHNHLVNIPNKGFEAQEKLVELHLNHNKI 114

Query: 196 SSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLT 255
           SS+NNKTFIGL SL +LNLRGN+LEDLPDRLFA L  LEELDLG NRI+RID A F+GLT
Sbjct: 115 SSINNKTFIGLASLTILNLRGNYLEDLPDRLFAALPKLEELDLGANRITRIDPASFQGLT 174

Query: 256 ALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGL 315
            LR+LYLDDNQLR++PTP+F +LG LAE+R+GLN FTTL D  F GLGRLS L+L GA L
Sbjct: 175 RLRVLYLDDNQLRAIPTPAFKFLGNLAEMRIGLNAFTTLDDDCFAGLGRLSVLELTGAAL 234

Query: 316 TNM 318
            N+
Sbjct: 235 INI 237

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242007469|ref|XP_002424562.1| tartan protein, putative [Pediculus humanus corporis] gi|212508005|gb|EEB11824.1| tartan protein, putative [Pediculus humanus corporis]

 Score =  303 bits (776), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 151/243 (62%), Positives = 187/243 (76%)

Query: 76  SVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKEANLDVIPITLN 135
           S LF ++    ++ L+     L    QA AFCP  C C+D+TLVV+CKEANLDVIPITLN
Sbjct: 32  SFLFRTMIQFHLFELIYMAVFLSSAAQALAFCPNGCICDDDTLVVSCKEANLDVIPITLN 91

Query: 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKL 195
           PSIQRLVLK NRIKTVD+A QFY  LQ+VDL++N LV+IP++ FE Q+KL EL LNHNK+
Sbjct: 92  PSIQRLVLKNNRIKTVDAAFQFYGELQYVDLAYNHLVSIPMKSFEAQKKLFELHLNHNKI 151

Query: 196 SSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLT 255
           SS+NN+TF+GLK+L VL+LR NFLE+L   LF+ L  L+ELDLG N IS +D + F GL+
Sbjct: 152 SSINNQTFVGLKNLGVLSLRENFLEELSSNLFSSLPSLQELDLGVNSISVVDPSAFSGLS 211

Query: 256 ALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGL 315
           +L+ILYLDDNQLRS+PT SF  LG LAEL +GLN FT+L+DGAF GL +L  LDL  AGL
Sbjct: 212 SLKILYLDDNQLRSIPTGSFSLLGNLAELHIGLNAFTSLSDGAFTGLTKLYKLDLVSAGL 271

Query: 316 TNM 318
            N+
Sbjct: 272 VNI 274

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270007914|gb|EFA04362.1| hypothetical protein TcasGA2_TC014658 [Tribolium castaneum]

 Score =  288 bits (736), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 146/216 (67%), Positives = 169/216 (78%)

Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDL 166
           CP  C CNDET VV C+   LDV+PITLNP+IQRLVL+ N+IKTVD+A QFY  LQ+VDL
Sbjct: 56  CPMGCVCNDETYVVLCERNKLDVLPITLNPAIQRLVLRNNKIKTVDAAFQFYKDLQYVDL 115

Query: 167 SHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRL 226
           S+N LVNIP + F  QEKL EL LN NKLSS+NNKTF GLKSL VLNLR NFLE+LP  L
Sbjct: 116 SNNHLVNIPTKSFIYQEKLQELHLNKNKLSSINNKTFQGLKSLTVLNLRENFLEELPQGL 175

Query: 227 FAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRV 286
           F+ +  LEEL+LGQNRIS+ID   F+GLTALR+LYLDDN L SVPT SF  LG LAEL V
Sbjct: 176 FSIMPKLEELNLGQNRISKIDPLAFDGLTALRVLYLDDNALSSVPTSSFSVLGSLAELHV 235

Query: 287 GLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHS 322
           GLN F++L D AF GLG+LS LDL  AGL+NM  ++
Sbjct: 236 GLNAFSSLPDDAFKGLGKLSVLDLSSAGLSNMSNNA 271

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91083775|ref|XP_972275.1| PREDICTED: similar to leucine-rich repeat-containing protein 4B [Tribolium castaneum]

 Score =  286 bits (732), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 146/216 (67%), Positives = 169/216 (78%)

Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDL 166
           CP  C CNDET VV C+   LDV+PITLNP+IQRLVL+ N+IKTVD+A QFY  LQ+VDL
Sbjct: 56  CPMGCVCNDETYVVLCERNKLDVLPITLNPAIQRLVLRNNKIKTVDAAFQFYKDLQYVDL 115

Query: 167 SHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRL 226
           S+N LVNIP + F  QEKL EL LN NKLSS+NNKTF GLKSL VLNLR NFLE+LP  L
Sbjct: 116 SNNHLVNIPTKSFIYQEKLQELHLNKNKLSSINNKTFQGLKSLTVLNLRENFLEELPQGL 175

Query: 227 FAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRV 286
           F+ +  LEEL+LGQNRIS+ID   F+GLTALR+LYLDDN L SVPT SF  LG LAEL V
Sbjct: 176 FSIMPKLEELNLGQNRISKIDPLAFDGLTALRVLYLDDNALSSVPTSSFSVLGSLAELHV 235

Query: 287 GLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHS 322
           GLN F++L D AF GLG+LS LDL  AGL+NM  ++
Sbjct: 236 GLNAFSSLPDDAFKGLGKLSVLDLSSAGLSNMSNNA 271

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307207257|gb|EFN85034.1| Leucine-rich repeats and immunoglobulin-like domains protein 3 [Harpegnathos saltator]

 Score =  260 bits (665), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 132/218 (60%), Positives = 160/218 (73%), Gaps = 1/218 (0%)

Query: 102 QASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSA-IQFYSS 160
           +A  FCP  C C+D+TLVV+C  ANLDVIPI LNPSIQR+VLK NRIK VD+A  QFY  
Sbjct: 29  EARTFCPTGCTCDDDTLVVSCVGANLDVIPIALNPSIQRIVLKENRIKIVDAAAFQFYGD 88

Query: 161 LQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLE 220
           L++VDLS N L  IP   F+ Q  LVEL L HNK+S++  KTF GLKSL VLNLR N+LE
Sbjct: 89  LKNVDLSSNHLFTIPNGSFDAQRHLVELHLKHNKISALTEKTFQGLKSLTVLNLRDNYLE 148

Query: 221 DLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGM 280
            L   LFA LS LEELDLGQNRIS+++   F+ L  LR+LYLDDNQLR++P+P+   L  
Sbjct: 149 TLKSGLFAYLSKLEELDLGQNRISKVEPGAFQKLGTLRVLYLDDNQLRTIPSPALAPLNA 208

Query: 281 LAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNM 318
           LAEL +G N F+TL D AF GL +L+ LD+ GAGL N+
Sbjct: 209 LAELHIGWNAFSTLPDDAFKGLEQLAVLDIMGAGLDNI 246

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345493135|ref|XP_003427009.1| PREDICTED: insulin-like growth factor-binding protein complex acid labile subunit-like [Nasonia vitripennis]

 Score =  259 bits (663), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 136/237 (57%), Positives = 168/237 (70%), Gaps = 3/237 (1%)

Query: 85  ITMWSLLVTTALLL--LVHQASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLV 142
           ITM +    T +L   +    +AFCP  C CNDETLVV+C  A LDVIPI LNPSIQR+V
Sbjct: 15  ITMATAFFLTVILTSSVAAGEAAFCPNGCICNDETLVVSCISAKLDVIPIALNPSIQRIV 74

Query: 143 LKYNRIKTVDSA-IQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNK 201
           L+ N+IK VD+A  QFY  L++VDLS N L  IP   FE Q++LVEL L HNK+S++  K
Sbjct: 75  LRDNQIKIVDAAAFQFYGDLRNVDLSFNHLFTIPDNSFEAQKQLVELHLKHNKISALTEK 134

Query: 202 TFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILY 261
           TF GLKSL VLNLR N+LE L + LF  L  LEELDLGQNRIS ++   F+ L +LR+LY
Sbjct: 135 TFTGLKSLTVLNLRNNYLEALTNGLFTSLDKLEELDLGQNRISSVEPGAFQKLGSLRVLY 194

Query: 262 LDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNM 318
           LDDNQL+S+P+P+   L  LAEL VGLN F++L D AF GL RL+ LD+  AGL N+
Sbjct: 195 LDDNQLQSIPSPALAPLNALAELHVGLNAFSSLPDDAFRGLERLAVLDVAAAGLDNI 251

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322799077|gb|EFZ20530.1| hypothetical protein SINV_04557 [Solenopsis invicta]

 Score =  259 bits (661), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 137/240 (57%), Positives = 169/240 (70%), Gaps = 2/240 (0%)

Query: 81  SVSDITMWSLLVTTALLLL-VHQASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQ 139
           S + I +  L V   L  L   +A  FCP  C C+D+TLVV+C  ANLDVIPI LNPSIQ
Sbjct: 5   SFTVIGVLHLFVLVGLFALGTAEARTFCPNGCTCDDDTLVVSCVGANLDVIPIALNPSIQ 64

Query: 140 RLVLKYNRIKTVDSA-IQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSV 198
           R+VLK NRIK VD+A  QFY  L++VDLS N L  IP   F+ Q  LVEL L HNK+S++
Sbjct: 65  RIVLKENRIKIVDAAAFQFYGDLKNVDLSSNHLFTIPNGSFDAQRHLVELHLKHNKISAL 124

Query: 199 NNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALR 258
             KTF GLKSL VLNLR N+LE L + LFA LS LEELDLGQNRIS+++   F+ L  LR
Sbjct: 125 TEKTFQGLKSLTVLNLRDNYLEMLKNGLFAYLSKLEELDLGQNRISKVEPGAFQKLGTLR 184

Query: 259 ILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNM 318
           +LYLDDNQLR++P+P+   L  LAEL +G N F++L D AF GL +L+ LD+ GAGL N+
Sbjct: 185 VLYLDDNQLRTIPSPALAPLNALAELHIGWNAFSSLPDDAFKGLEQLAVLDIMGAGLDNI 244

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110750681|ref|XP_396683.3| PREDICTED: slit homolog 1 protein-like [Apis mellifera]

 Score =  256 bits (653), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 132/236 (55%), Positives = 172/236 (72%), Gaps = 3/236 (1%)

Query: 84  DITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVL 143
           D+T++ LL+   L  L    +A CP  C C+D+ LVV+C  ANLDVIPI LNPSIQR+VL
Sbjct: 19  DVTLFHLLILAGLFTL--GTAAICPNGCICDDDNLVVSCIGANLDVIPIALNPSIQRIVL 76

Query: 144 KYNRIKTVDSA-IQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKT 202
           K NRIK VD+A  QFY  L++VDLS N L  IP   F+ Q++LVEL L HNK+S++  KT
Sbjct: 77  KENRIKIVDAAAFQFYGDLKNVDLSSNHLFTIPNGSFDAQKQLVELHLRHNKISALTEKT 136

Query: 203 FIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYL 262
           F GLKSL VLNLR N+LE+L + LFA LS LEELDLG+NRIS+++   F+ L  LR+L+L
Sbjct: 137 FQGLKSLTVLNLRDNYLENLKNGLFASLSKLEELDLGKNRISKVELGAFQKLGTLRVLHL 196

Query: 263 DDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNM 318
           DDNQL+++P+P+   L  LAEL +G N F++L D AF GL +L+ LD+ GAGL N+
Sbjct: 197 DDNQLKTIPSPALAPLNALAELHIGWNAFSSLPDDAFRGLEQLTVLDITGAGLDNI 252

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332017189|gb|EGI57982.1| Leucine-rich repeat neuronal protein 2 [Acromyrmex echinatior]

 Score =  255 bits (652), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 132/222 (59%), Positives = 161/222 (72%), Gaps = 1/222 (0%)

Query: 98  LLVHQASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSA-IQ 156
           L   +A  FCP  C C+D+TLVV+C  ANLDVIPI LNPSIQR+VLK NRIK VD+A  Q
Sbjct: 25  LGTAEARTFCPNGCTCDDDTLVVSCVGANLDVIPIALNPSIQRIVLKENRIKIVDAAAFQ 84

Query: 157 FYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRG 216
           FY  L++VDLS N L  IP   F+ Q  LVEL L HNK+S++  KTF GLKSL VLNLR 
Sbjct: 85  FYGDLKNVDLSSNHLFTIPNGSFDAQRHLVELHLKHNKISALTEKTFQGLKSLTVLNLRD 144

Query: 217 NFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFI 276
           N+LE L + LFA LS LEELDLGQNRIS+++   F+ L  LR+LYLDDNQLR+VP+ +  
Sbjct: 145 NYLETLNNGLFAYLSKLEELDLGQNRISKVEPGAFQKLGTLRVLYLDDNQLRTVPSSALA 204

Query: 277 YLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNM 318
            L  LAEL +G N F++L D AF GL +L+ LD+ GAGL N+
Sbjct: 205 PLNALAELHIGWNAFSSLPDDAFKGLEQLAVLDIMGAGLDNI 246

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170043786|ref|XP_001849554.1| leucine-rich repeat-containing protein 4B [Culex quinquefasciatus] gi|167867092|gb|EDS30475.1| leucine-rich repeat-containing protein 4B [Culex quinquefasciatus]

 Score =  253 bits (645), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 124/218 (56%), Positives = 162/218 (74%)

Query: 105 AFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHV 164
           A CP  C C+D+TL V C E  LDV+PI LNPS+QRLV+K N+IKT+DS++QFY+ L+ +
Sbjct: 22  ANCPLGCSCDDDTLEVICGEGGLDVLPIVLNPSLQRLVIKNNKIKTIDSSMQFYAELRFL 81

Query: 165 DLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPD 224
           DLS+N L N+P R F  Q+KL EL LNHNK+ S++NKTF+GL SL +LNLRGNFL++L D
Sbjct: 82  DLSYNHLFNMPPRTFAYQKKLTELHLNHNKVGSISNKTFLGLDSLTILNLRGNFLDELSD 141

Query: 225 RLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAEL 284
            +F  L  LEEL+LGQNRI +ID   FEGL  L++LYLDDN L +VP+ +F  L  LAEL
Sbjct: 142 GVFGGLKKLEELNLGQNRIGKIDAKAFEGLVNLKVLYLDDNTLSAVPSAAFGPLASLAEL 201

Query: 285 RVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHS 322
            +G+N F+ +   AF  L +LS LDL+GA L+N+ G S
Sbjct: 202 YLGINSFSGVPKDAFLSLSKLSRLDLKGAALSNVTGES 239

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	332
FB|FBgn0023095	748	caps "capricious" [Drosophila	0.659	0.292	0.536	1.7e-57
FB|FBgn0010452	737	trn "tartan" [Drosophila melan	0.665	0.299	0.538	2.8e-57
FB|FBgn0085397	738	Fili "Fish-lips" [Drosophila m	0.635	0.285	0.338	3.1e-28
ZFIN|ZDB-GENE-091214-3	604	lingo4b "leucine rich repeat a	0.659	0.362	0.306	2.6e-21
UNIPROTKB|F1P2C4	423	LRRC4C "Uncharacterized protei	0.596	0.468	0.334	7.7e-21
UNIPROTKB|F1NTY3	545	LRRC4C "Uncharacterized protei	0.596	0.363	0.334	1.9e-20
UNIPROTKB|F1NI07	604	IGFALS "Uncharacterized protei	0.563	0.309	0.340	2.4e-20
MGI|MGI:107973	603	Igfals "insulin-like growth fa	0.563	0.310	0.340	3.1e-20
MGI|MGI:2444651	593	Lingo4 "leucine rich repeat an	0.614	0.344	0.326	4.9e-20
UNIPROTKB|F1SHH6	640	LRRC4C "Uncharacterized protei	0.596	0.309	0.330	5.8e-20

FB|FBgn0023095 caps "capricious" [Drosophila melanogaster (taxid:7227)]

 Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
 Identities = 118/220 (53%), Positives = 155/220 (70%)

Query:   105 AFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHV 164
             A CP  C+C+D+TL+V C E  LDV+PI LNP+IQRLV+K N++KT+DS++QFY+ L  +
Sbjct:    41 ANCPNGCECDDDTLMVNCGEGTLDVLPIALNPAIQRLVIKNNKLKTIDSSMQFYAQLTFL 100

Query:   165 DLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPD 224
             DLS N ++ IP R F    KL EL L+HNK+  V+NKTF+GL ++ VLNLRGN + +L  
Sbjct:   101 DLSFNDMLTIPERSFAYHAKLQELHLDHNKIGQVSNKTFLGLSTISVLNLRGNLIAELEY 160

Query:   225 RLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTP-SFIYLGMLAE 283
             R F+P+  L EL+LGQNRIS ID    +GL  LR+LYLDDN L +VP   +F  L  LAE
Sbjct:   161 RTFSPMVKLAELNLGQNRISHIDPHALDGLDNLRVLYLDDNTLTTVPGELTFQALHSLAE 220

Query:   284 LRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSM 323
             L +G N F T+  GAF  L  L+ LDLRGAGL N+ G ++
Sbjct:   221 LYLGTNSFMTIPGGAFQDLKGLTRLDLRGAGLHNISGDAL 260

GO:0007411 "axon guidance" evidence=IMP

GO:0007424 "open tracheal system development" evidence=IMP

GO:0016020 "membrane" evidence=NAS

GO:0007155 "cell adhesion" evidence=NAS

GO:0016477 "cell migration" evidence=TAS

GO:0072499 "photoreceptor cell axon guidance" evidence=IMP

GO:0007156 "homophilic cell adhesion" evidence=IDA

GO:0035147 "branch fusion, open tracheal system" evidence=IMP

GO:0008045 "motor neuron axon guidance" evidence=IMP

GO:0042995 "cell projection" evidence=IDA

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

GO:0046331 "lateral inhibition" evidence=IMP

FB|FBgn0010452 trn "tartan" [Drosophila melanogaster (taxid:7227)]

 Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
 Identities = 120/223 (53%), Positives = 154/223 (69%)

Query:   105 AFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHV 164
             A CPP C C+D TLVV C E  LDV+PI LNPSIQRLV+K N+IKT+DS+IQFY+ L  +
Sbjct:    28 ANCPPGCQCDDNTLVVQCGEGQLDVLPIALNPSIQRLVIKSNKIKTIDSSIQFYAELTFL 87

Query:   165 DLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPD 224
             DLS N L+ IP R F  Q+KL E+ LNHNK+  ++NKTFIGL ++ VLNLRGN + +L  
Sbjct:    88 DLSSNHLMTIPQRTFAYQKKLQEVHLNHNKIGQISNKTFIGLSAVTVLNLRGNQISELHQ 147

Query:   225 RLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPS-FIYLGMLAE 283
               F PL  +EEL+LG+NRI  +D   F+GL+ LRILYLDDN L +VP P  F  +  LAE
Sbjct:   148 GTFTPLLKIEELNLGENRIGYLDPKAFDGLSQLRILYLDDNALTTVPDPVIFQAMPSLAE 207

Query:   284 LRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALG 326
             L +G+N   ++   AF  L  L+ L+L+GA L N+  H   LG
Sbjct:   208 LFLGMNTLQSIQADAFQDLKGLTRLELKGASLRNI-SHDSFLG 249

GO:0005886 "plasma membrane" evidence=NAS

GO:0007155 "cell adhesion" evidence=NAS

GO:0007424 "open tracheal system development" evidence=IMP

GO:0016477 "cell migration" evidence=TAS

GO:0035147 "branch fusion, open tracheal system" evidence=IMP

GO:0008045 "motor neuron axon guidance" evidence=IMP

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

FB|FBgn0085397 Fili "Fish-lips" [Drosophila melanogaster (taxid:7227)]

 Score = 324 (119.1 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 72/213 (33%), Positives = 118/213 (55%)

Query:   102 QASAFCPPDCDC--NDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYS 159
             + +AFCP  C C   +      C +A L+ +PI LNP  + + L  NRI+T++ ++ FY 
Sbjct:    37 ETTAFCPSKCQCLGGEANSRALCVDAALEDVPIQLNPETKYINLTVNRIRTLEFSLPFYM 96

Query:   160 SLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFL 219
              L+ +DLS N +  +  + FE Q +L  L L+ N +SS++   F GL +L +L+L  N +
Sbjct:    97 KLEILDLSQNIIETLGSKNFEYQSELRTLNLSRNLVSSLHKHAFKGLTNLLLLDLSFNRI 156

Query:   220 EDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLG 279
             E +     + L+ L ELDL  N I  ++  CF+G+  L +L   +N+L  VP  +  +L 
Sbjct:   157 ETVHPTALSDLASLVELDLTNNNIVSLEDNCFKGMNTLEVLVFRNNRLLDVPASNLWHLH 216

Query:   280 MLAELRVGLNVFTTLADGAFNGLGRLSALDLRG 312
              L  L + LN+   + + +F GL  L AL ++G
Sbjct:   217 ALKSLDMSLNLVEFVRNDSFEGLKELLALSVQG 249

GO:0003674 "molecular_function" evidence=ND

GO:0042981 "regulation of apoptotic process" evidence=IMP

GO:0016021 "integral to membrane" evidence=ISM

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

ZFIN|ZDB-GENE-091214-3 lingo4b "leucine rich repeat and Ig domain containing 4b" [Danio rerio (taxid:7955)]

 Score = 258 (95.9 bits), Expect = 2.6e-21, P = 2.6e-21
 Identities = 68/222 (30%), Positives = 114/222 (51%)

Query:   107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQF--YSSLQHV 164
             CP  C C+ + L V C   +L  +P  L  + +RL L  N++KT+ +  QF   S L+ +
Sbjct:    29 CPQRCSCSRDPLEVNCSSRHLTAVPEGLPTNAKRLDLSGNQLKTL-ARRQFSSLSKLEDL 87

Query:   165 DLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPD 224
             DLS N +  I +  F+  + L  L++ +N+L  +    F GL +L+ L++  N +    D
Sbjct:    88 DLSENIISMIEVETFQGLKNLRYLRIKNNRLKILPVGVFSGLSNLRRLDISENEILVFLD 147

Query:   225 RLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAEL 284
               F  + +L++LD G+N +  I Q  F GL AL+ L +D + L S+PT +   L  L +L
Sbjct:   148 YTFRDMINLQQLDAGENDLVFISQRAFVGLQALKELNVDRSNLTSIPTEALSQLQSLTKL 207

Query:   285 RVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALG 326
             R+     + L + AF  L +L  L +       M+  +  +G
Sbjct:   208 RLRKLTISVLPNNAFRRLHQLRTLQILHWSSLEMLNSNSLVG 249

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1P2C4 LRRC4C "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 249 (92.7 bits), Expect = 7.7e-21, P = 7.7e-21
 Identities = 69/206 (33%), Positives = 104/206 (50%)

Query:   107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVD- 165
             CP  C C+++   V C   NL  +P  ++ + + L L  N+I+ +   +  +  L+H++ 
Sbjct:    24 CPSVCSCSNQFSKVICVRKNLRDVPDGISTNTRLLNLHENQIQIIK--VNSFKHLRHLEI 81

Query:   166 --LSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLP 223
               LS N +  I I  F     L  L+L  N+L+++ N  F+ L  LK L LR N +E +P
Sbjct:    82 LQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIP 141

Query:   224 DRLFAPLSHLEELDLGQ-NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLA 282
                F  +  L  LDLG+  R+S I +  FEGL+ LR L L    LR +P  +   L  L 
Sbjct:   142 SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--NLTPLVKLD 199

Query:   283 ELRVGLNVFTTLADGAFNGLGRLSAL 308
             EL +  N  T +  G+F GL  L  L
Sbjct:   200 ELDLSGNHLTAIRPGSFQGLMHLQKL 225

GO:0016021 "integral to membrane" evidence=IEA

GO:0050770 "regulation of axonogenesis" evidence=IEA

UNIPROTKB|F1NTY3 LRRC4C "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 249 (92.7 bits), Expect = 1.9e-20, P = 1.9e-20
 Identities = 69/206 (33%), Positives = 104/206 (50%)

Query:   107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVD- 165
             CP  C C+++   V C   NL  +P  ++ + + L L  N+I+ +   +  +  L+H++ 
Sbjct:    15 CPSVCSCSNQFSKVICVRKNLRDVPDGISTNTRLLNLHENQIQIIK--VNSFKHLRHLEI 72

Query:   166 --LSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLP 223
               LS N +  I I  F     L  L+L  N+L+++ N  F+ L  LK L LR N +E +P
Sbjct:    73 LQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIP 132

Query:   224 DRLFAPLSHLEELDLGQ-NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLA 282
                F  +  L  LDLG+  R+S I +  FEGL+ LR L L    LR +P  +   L  L 
Sbjct:   133 SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--NLTPLVKLD 190

Query:   283 ELRVGLNVFTTLADGAFNGLGRLSAL 308
             EL +  N  T +  G+F GL  L  L
Sbjct:   191 ELDLSGNHLTAIRPGSFQGLMHLQKL 216

GO:0016021 "integral to membrane" evidence=IEA

GO:0050770 "regulation of axonogenesis" evidence=IEA

UNIPROTKB|F1NI07 IGFALS "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 249 (92.7 bits), Expect = 2.4e-20, P = 2.4e-20
 Identities = 64/188 (34%), Positives = 102/188 (54%)

Query:   138 IQRLVLKYNRIKTVDSAIQF-YSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLS 196
             ++ L L  N +K +   I      LQ + L++NQ+  I  R F   + L  L L+HN+L+
Sbjct:   215 LKELDLSGNALKGIKINIFVKLQKLQKLYLNNNQINAIAPRAFMGMKSLRWLDLSHNRLT 274

Query:   197 SVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTA 256
             S+   TF+GL SL VL L  N +  L  R F  L  LEEL LG NRI  + +  F+GL  
Sbjct:   275 SLYEDTFLGLLSLHVLRLSTNSITSLRPRTFKDLQFLEELQLGHNRIWSLAERTFDGLGQ 334

Query:   257 LRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT 316
             L +L L++NQL+ +   +F+ L  +A + +  N   TL +  F G+ +L +L L  + L+
Sbjct:   335 LEVLSLNNNQLQDIKAGAFLGLYNVAVMHLSANCIKTLPEYVFEGVTKLHSLHLEHSCLS 394

Query:   317 NMMGHSMA 324
              +  ++ +
Sbjct:   395 KIRANTFS 402

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:107973 Igfals "insulin-like growth factor binding protein, acid labile subunit" [Mus musculus (taxid:10090)]

 Score = 248 (92.4 bits), Expect = 3.1e-20, P = 3.1e-20
 Identities = 64/188 (34%), Positives = 98/188 (52%)

Query:   138 IQRLVLKYNRIKTVDSAIQFY-SSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLS 196
             ++ L L  N +++V + +  +   LQ + L  N +  +  R F   + L  L L+HN+++
Sbjct:   220 LRELDLSRNALRSVKANVFIHLPRLQKLYLDRNLITAVAPRAFLGMKALRWLDLSHNRVA 279

Query:   197 SVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTA 256
              +   TF GL  L VL L  N +  L  R F  L  LEEL LG NRI ++ +  FEGL  
Sbjct:   280 GLLEDTFPGLLGLHVLRLAHNAITSLRPRTFKDLHFLEELQLGHNRIRQLGEKTFEGLGQ 339

Query:   257 LRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT 316
             L +L L+DNQ+  V   +F  L  +A + +  N   +L +  F GLGRL +L L  + L 
Sbjct:   340 LEVLTLNDNQIHEVKVGAFFGLFNVAVMNLSGNCLRSLPEHVFQGLGRLHSLHLEHSCLG 399

Query:   317 NMMGHSMA 324
              +  H+ A
Sbjct:   400 RIRLHTFA 407

GO:0005515 "protein binding" evidence=IPI

GO:0005520 "insulin-like growth factor binding" evidence=ISO

GO:0005576 "extracellular region" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=ISO

GO:0042567 "insulin-like growth factor ternary complex" evidence=ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

MGI|MGI:2444651 Lingo4 "leucine rich repeat and Ig domain containing 4" [Mus musculus (taxid:10090)]

 Score = 246 (91.7 bits), Expect = 4.9e-20, P = 4.9e-20
 Identities = 67/205 (32%), Positives = 98/205 (47%)

Query:   107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSA-IQFYSSLQHVD 165
             CP  CDC  +T  V C    LD IP  L    + L L  NR+  +    +     LQ +D
Sbjct:    31 CPTVCDCTSQTRAVFCAHRRLDTIPGGLPLDTELLDLSGNRLWGLQRGMLSRLGQLQELD 90

Query:   166 LSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDR 225
             LS+NQL  +    F   + L+ L+L  N+L  V    F GL +L +L+LR N +    D 
Sbjct:    91 LSYNQLSTLEPGAFHGLQSLLTLRLQGNRLRIVGPGIFSGLTALTLLDLRLNQIVLFLDG 150

Query:   226 LFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELR 285
              F+ L  L++L++G N +  +    F GL  L  + L+   L +VP  +   L  L  LR
Sbjct:   151 AFSELGSLQQLEVGDNHLVFVAPGAFAGLAKLSTITLERCNLSTVPGLALAQLPALVALR 210

Query:   286 VGLNVFTTLADGAFNGLGRLSALDL 310
             +       L  GA  GLG+L  L++
Sbjct:   211 LRELDIERLPAGALRGLGQLKELEI 235

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1SHH6 LRRC4C "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 246 (91.7 bits), Expect = 5.8e-20, P = 5.8e-20
 Identities = 68/206 (33%), Positives = 104/206 (50%)

Query:   107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVD- 165
             CP  C C+++   V C   NL  +P  ++ + + L L  N+I+ +   +  +  L+H++ 
Sbjct:    47 CPSVCSCSNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIK--VNSFKHLRHLEI 104

Query:   166 --LSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLP 223
               LS N +  I I  F     L  L+L  N+L+++ N  F+ L  LK L LR N +E +P
Sbjct:   105 LQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIP 164

Query:   224 DRLFAPLSHLEELDLGQ-NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLA 282
                F  +  L  LDLG+  R+S I +  FEGL+ LR L L    LR +P  +   L  L 
Sbjct:   165 SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--NLTPLVKLD 222

Query:   283 ELRVGLNVFTTLADGAFNGLGRLSAL 308
             EL +  N  + +  G+F GL  L  L
Sbjct:   223 ELDLSGNHLSAIRPGSFQGLMHLQKL 248

GO:0050770 "regulation of axonogenesis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	332
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-12
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-10
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-09
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	8e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	4e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	1e-04
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	2e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-04
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	3e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.001
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.002
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.002

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 61.4 bits (150), Expect = 1e-12
 Identities = 25/60 (41%), Positives = 33/60 (55%)

Query: 208 SLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQL 267
           +LK L+L  N L  +PD  F  L +L+ LDL  N ++ I    F GL +LR L L  N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 54.9 bits (133), Expect = 3e-10
 Identities = 23/60 (38%), Positives = 34/60 (56%)

Query: 184 KLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRI 243
            L  L L++N+L+ + +  F GL +LKVL+L GN L  +    F+ L  L  LDL  N +
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 52.2 bits (126), Expect = 3e-09
 Identities = 24/58 (41%), Positives = 37/58 (63%)

Query: 160 SLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGN 217
           +L+ +DLS+N+L  IP   F+    L  L L+ N L+S++ + F GL SL+ L+L GN
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 45.2 bits (108), Expect = 8e-07
 Identities = 20/53 (37%), Positives = 29/53 (54%)

Query: 232 HLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAEL 284
           +L+ LDL  NR++ I    F+GL  L++L L  N L S+   +F  L  L  L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSL 53

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 47.7 bits (113), Expect = 4e-06
 Identities = 50/242 (20%), Positives = 96/242 (39%), Gaps = 9/242 (3%)

Query: 50  TEILKSLLIIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPP 109
              L  L     E+  L  L     D+   + +  +          L L  ++  +   P
Sbjct: 99  DLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP 158

Query: 110 DCDC-NDETLVVTCKEANLDVIP--ITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDL 166
             +  N + L ++    +L  +P  ++   ++  L L  N+I  +   I+  S+L+ +DL
Sbjct: 159 LRNLPNLKNLDLS--FNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDL 216

Query: 167 SHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRL 226
           S+N ++ +        + L  L+L++NKL  +   +   L +L+ L+L  N +  +    
Sbjct: 217 SNNSIIELLS-SLSNLKNLSGLELSNNKLEDLPE-SIGNLSNLETLDLSNNQISSIS--S 272

Query: 227 FAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRV 286
              L++L ELDL  N +S         L  L +L      L+++       L     L  
Sbjct: 273 LGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSILLNNNILSN 332

Query: 287 GL 288
           G 
Sbjct: 333 GE 334

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 43/164 (26%), Positives = 65/164 (39%), Gaps = 25/164 (15%)

Query: 128 DVIPITLNPSIQRL---VLKYNRIKTVDSAIQFYSSLQHVDLSHNQL------VNIPIRG 178
           +++P  L   + RL    L     K + SA++   SL+ + LS N+       +   ++G
Sbjct: 17  ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQG 76

Query: 179 FEPQEKLVELQLNHNKLSSVNNKTFIGL---KSLKVLNLRGNFLEDLPDRLFA-----PL 230
                 L EL L+ N L          L    SL+ L L  N L D   RL A       
Sbjct: 77  LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLP 136

Query: 231 SHLEELDLGQNRISRIDQACFE------GLTALRILYLDDNQLR 268
             LE+L LG+NR+     +C            L+ L L +N + 
Sbjct: 137 PALEKLVLGRNRLE--GASCEALAKALRANRDLKELNLANNGIG 178

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 44.1 bits (104), Expect = 8e-05
 Identities = 41/153 (26%), Positives = 61/153 (39%), Gaps = 3/153 (1%)

Query: 159 SSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNL-RGN 217
            SL+ V L  N         F     +  L +++N L    N     + SL++L+L R  
Sbjct: 404 RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK 463

Query: 218 FLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIY 277
           F   LPD   +    LE LDL +N+ S         L+ L  L L +N+L          
Sbjct: 464 FFGGLPDSFGS--KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSS 521

Query: 278 LGMLAELRVGLNVFTTLADGAFNGLGRLSALDL 310
              L  L +  N  +     +F+ +  LS LDL
Sbjct: 522 CKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDL 554

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.4 bits (93), Expect = 1e-04
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 137 SIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKL 195
           +++ L L  NR+  + D A +   +L+ +DLS N L +I    F     L  L L+ N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 40/172 (23%), Positives = 64/172 (37%), Gaps = 23/172 (13%)

Query: 159 SSLQHVDLSHNQL----VNIPIRGF-EPQEKLVELQLNHNKLSSVN----NKTFIGLKSL 209
           SSLQ + L++N L    + +  +G  +    L +L L  N+L   +     K     + L
Sbjct: 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDL 167

Query: 210 KVLNLRGN-FLEDLPDRL---FAPLSHLEELDLGQNRISRID----QACFEGLTALRILY 261
           K LNL  N   +     L        +LE LDL  N ++             L +L +L 
Sbjct: 168 KELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLN 227

Query: 262 LDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGA 313
           L DN L      + +   +L+     L +       + N +    A DL   
Sbjct: 228 LGDNNLTDAGA-AALASALLSPNISLLTL-----SLSCNDITDDGAKDLAEV 273

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 207 KSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
            +L+ L+L  N + DLP    + L +LE LDL  N+I+ + 
Sbjct: 1   TNLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLS 39

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 2/110 (1%)

Query: 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKL 195
           PS+Q L L  N+             L+++DLS NQ      R      +L++L+L+ NKL
Sbjct: 452 PSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKL 511

Query: 196 SSVNNKTFIGLKSLKVLNLRGNFLE-DLPDRLFAPLSHLEELDLGQNRIS 244
           S          K L  L+L  N L   +P   F+ +  L +LDL QN++S
Sbjct: 512 SGEIPDELSSCKKLVSLDLSHNQLSGQIPAS-FSEMPVLSQLDLSQNQLS 560

Length = 968

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 42.0 bits (98), Expect = 3e-04
 Identities = 48/182 (26%), Positives = 77/182 (42%), Gaps = 31/182 (17%)

Query: 108 PPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLS 167
           P +   N +TL        L  IP TL  +IQ + L  NRI  +   +   S+LQ +DL 
Sbjct: 215 PENLQGNIKTLYA--NSNQLTSIPATLPDTIQEMELSINRITELPERLP--SALQSLDLF 270

Query: 168 HNQLVNIP----------------IRGFEPQ--EKLVELQLNHNKLSSVNNKTFIGLKSL 209
           HN++  +P                IR         +  L +  N L+++      GLK+L
Sbjct: 271 HNKISCLPENLPEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTL 330

Query: 210 KVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRS 269
           +      N L  LP  L  P   L+ LD+ +N+I+ + +     +T    L +  N L +
Sbjct: 331 EAGE---NALTSLPASL--P-PELQVLDVSKNQITVLPETLPPTITT---LDVSRNALTN 381

Query: 270 VP 271
           +P
Sbjct: 382 LP 383

Length = 754

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.0 bits (96), Expect = 7e-04
 Identities = 24/80 (30%), Positives = 35/80 (43%)

Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
           L L++  L          L+ L+ +NL GN +          ++ LE LDL  N  +   
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 248 QACFEGLTALRILYLDDNQL 267
                 LT+LRIL L+ N L
Sbjct: 483 PESLGQLTSLRILNLNGNSL 502

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 40.2 bits (94), Expect = 0.001
 Identities = 34/110 (30%), Positives = 49/110 (44%), Gaps = 5/110 (4%)

Query: 160 SLQHVDLSHNQLV-NIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNF 218
           SLQ + L+ N+    +P       ++L  L L+ N+ S    +    L  L  L L  N 
Sbjct: 453 SLQMLSLARNKFFGGLP--DSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENK 510

Query: 219 LE-DLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQL 267
           L  ++PD L +    L  LDL  N++S    A F  +  L  L L  NQL
Sbjct: 511 LSGEIPDEL-SSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL 559

Length = 968

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 35.2 bits (82), Expect = 0.002
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 184 KLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLP 223
            L  L L++N+++ +       L +L+ L+L GN + DL 
Sbjct: 2   NLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLS 39

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 35.2 bits (82), Expect = 0.002
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 232 HLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVP 271
           +LE LDL  N+I+ +       L  L  L L  N++  + 
Sbjct: 2   NLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLS 39

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	332
KOG4194|consensus	873		99.95
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.94
KOG4237|consensus	498		99.94
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.93
KOG4194|consensus	873		99.93
KOG0444|consensus	1255		99.87
KOG0472|consensus	565		99.85
KOG0444|consensus	1255		99.85
KOG0472|consensus	565		99.85
KOG0618|consensus	1081		99.76
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.74
KOG4237|consensus	498		99.74
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.74
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.73
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.71
KOG0617|consensus	264		99.69
KOG0617|consensus	264		99.69
KOG0618|consensus	1081		99.68
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.67
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.6
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.54
KOG0532|consensus	722		99.43
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.42
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.42
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.38
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.33
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.28
KOG1259|consensus	490		99.19
KOG1259|consensus	490		99.18
KOG0532|consensus	722		99.18
KOG3207|consensus	505		99.09
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.08
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.07
KOG1909|consensus	382		99.05
KOG0531|consensus	414		99.01
KOG3207|consensus	505		99.01
KOG0531|consensus	414		98.98
PLN03150	623	hypothetical protein; Provisional	98.96
PLN03150	623	hypothetical protein; Provisional	98.89
KOG1909|consensus	382		98.72
KOG1859|consensus	1096		98.7
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.62
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.55
KOG4658|consensus	889		98.51
KOG1859|consensus	1096		98.49
KOG4579|consensus	177		98.39
KOG1644|consensus	233		98.32
KOG1644|consensus	233		98.31
KOG4579|consensus	177		98.31
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.28
KOG2120|consensus	419		98.26
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.19
KOG2982|consensus	418		98.15
PRK15386	426	type III secretion protein GogB; Provisional	98.05
KOG4658|consensus	889		98.03
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.0
PRK15386	426	type III secretion protein GogB; Provisional	97.96
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.84
KOG2982|consensus	418		97.66
KOG3665|consensus	699		97.53
KOG3665|consensus	699		97.42
KOG2739|consensus	260		97.4
KOG2123|consensus	388		97.36
KOG2120|consensus	419		97.34
KOG2123|consensus	388		97.29
KOG2739|consensus	260		97.23
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.33
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	95.91
smart00370	26	LRR Leucine-rich repeats, outliers.	95.91
smart00013	33	LRRNT Leucine rich repeat N-terminal domain.	95.82
PF01462	28	LRRNT: Leucine rich repeat N-terminal domain; Inte	95.7
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.67
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.36
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.52
smart00370	26	LRR Leucine-rich repeats, outliers.	94.52
KOG1947|consensus	482		94.48
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.12
KOG4308|consensus	478		93.7
KOG3864|consensus	221		90.77
KOG0473|consensus	326		89.43
KOG3864|consensus	221		89.21
KOG0473|consensus	326		88.54
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	86.89
KOG4308|consensus	478		85.88
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	85.83
KOG1947|consensus	482		82.68
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	82.5

>KOG4194|consensus

Probab=99.95  E-value=6.7e-29  Score=227.65  Aligned_cols=320  Identities=23%  Similarity=0.246  Sum_probs=214.4

Q ss_pred             Hhhhccccce-EEEeeehhheehhhhcCCCCCCCCCCccCCchhhHhhhhccchhhhhhhhhhhhhcCccccchhhhhHH
Q psy8550           9 KRKVQGQLDE-IFWIDILDVTYILYKLHPGFQNNPKSNFKSPTEILKSLLIIPFEVRILNKLRIFINDSVLFSSVSDITM   87 (332)
Q Consensus         9 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~l~~iP~~~~~l~~L~~l~~~~~~~~~~~~~~~   87 (332)
                      |+++.|-+|. -+-+++++++.- .....++..+|  .+.......++++.||...+...+|+.|++..|..+.......
T Consensus        69 ~~~l~g~lp~~t~~LdlsnNkl~-~id~~~f~nl~--nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L  145 (873)
T KOG4194|consen   69 KSRLKGFLPSQTQTLDLSNNKLS-HIDFEFFYNLP--NLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEEL  145 (873)
T ss_pred             ccccCCcCccceeeeeccccccc-cCcHHHHhcCC--cceeeeeccchhhhcccccccccceeEEeeeccccccccHHHH
Confidence            6788888887 455666655431 11122333444  4455666667899999999999999999999999988866554


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCccc-CCCceEEecCCCccccCCCCC---CCccEEEeecCCCccchh-hhcCCCCCc
Q psy8550          88 WSLLVTTALLLLVHQASAFCPPDCDCN-DETLVVTCKEANLDVIPITLN---PSIQRLVLKYNRIKTVDS-AIQFYSSLQ  162 (332)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~p~~c~c~-~~~~~~~c~~~~l~~lp~~~~---~~L~~L~l~~~~l~~l~~-~~~~l~~L~  162 (332)
                      ..+. .+..+....+.....|..|.-. .....++...+.++.+-.+..   .++..|.|+.|+++.+|. .|.++++|+
T Consensus       146 ~~l~-alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~  224 (873)
T KOG4194|consen  146 SALP-ALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLE  224 (873)
T ss_pred             HhHh-hhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhh
Confidence            3333 3334445555566666666554 456678888888887765433   578888889999998888 777788999


Q ss_pred             EEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCC
Q psy8550         163 HVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNR  242 (332)
Q Consensus       163 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  242 (332)
                      .|++..|+|..+.--+|.++++|+.|.+.+|.+..+...+|..+.++++|+|..|++..+..+.+.+++.|+.|+++.|.
T Consensus       225 ~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na  304 (873)
T KOG4194|consen  225 SLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA  304 (873)
T ss_pred             hhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhh
Confidence            99888888877765667777777777777777776666666666666666666666666655555556666666666666


Q ss_pred             CcccChhhcCCCCCCcEEeCCCCCCCCcCc------------------------ccccCCCCccEEEcCCCcCCccCc--
Q psy8550         243 ISRIDQACFEGLTALRILYLDDNQLRSVPT------------------------PSFIYLGMLAELRVGLNVFTTLAD--  296 (332)
Q Consensus       243 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------------------------~~~~~l~~L~~L~L~~n~l~~~~~--  296 (332)
                      |..+.++.+...++|+.|+|+.|+++.+++                        ..|..+++|+.|||++|.+...++  
T Consensus       305 I~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDa  384 (873)
T KOG4194|consen  305 IQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDA  384 (873)
T ss_pred             hheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecc
Confidence            665555555555555555555555555543                        444455566666666666654433  


Q ss_pred             -hhcCCCCCCCEEEccCCCCCCcccccccCCCCcccC
Q psy8550         297 -GAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHWI  332 (332)
Q Consensus       297 -~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~l  332 (332)
                       .+|.++++|+.|++.||+++.|+..+|+.++.|+.|
T Consensus       385 a~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~L  421 (873)
T KOG4194|consen  385 AVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHL  421 (873)
T ss_pred             hhhhccchhhhheeecCceeeecchhhhccCccccee
Confidence             356667777777777777777777777777777643

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.94  E-value=9.1e-27  Score=240.83  Aligned_cols=284  Identities=21%  Similarity=0.174  Sum_probs=171.4

Q ss_pred             CCchhhHhhh-hccchhhhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCcccCCCceEEecCC
Q psy8550          47 KSPTEILKSL-LIIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKEA  125 (332)
Q Consensus        47 ~~~~~~~~~l-~~iP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~c~c~~~~~~~~c~~~  125 (332)
                      ..+++....+ ..+|..++++.+|+.|++++|.+.+..+..+..+..+..+.+..+......|........++.+...++
T Consensus       143 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n  222 (968)
T PLN00113        143 ETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN  222 (968)
T ss_pred             CEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCC
Confidence            4444444444 367888888888888888888776655544433333333333333333344554444555666666666


Q ss_pred             Ccc-ccCCCCC--CCccEEEeecCCCc-cchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCcc
Q psy8550         126 NLD-VIPITLN--PSIQRLVLKYNRIK-TVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNK  201 (332)
Q Consensus       126 ~l~-~lp~~~~--~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  201 (332)
                      .+. .+|..+.  +++++|++++|.+. .+|..++++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|.
T Consensus       223 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~  302 (968)
T PLN00113        223 NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE  302 (968)
T ss_pred             ccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh
Confidence            655 4554443  56777777777766 5666777777777777777776665556666677777777777776666666


Q ss_pred             ccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcc--------
Q psy8550         202 TFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTP--------  273 (332)
Q Consensus       202 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------  273 (332)
                      .+.++++|++|++++|.+....+..+..+++|+.|++++|.+.+..|..++.+++|+.|++++|.+.+..+.        
T Consensus       303 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L  382 (968)
T PLN00113        303 LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNL  382 (968)
T ss_pred             hHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCC
Confidence            666666777777776666655555556666666666666666654455555566666666666655543333        


Q ss_pred             ----------------cccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCcc
Q psy8550         274 ----------------SFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLH  330 (332)
Q Consensus       274 ----------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~  330 (332)
                                      .++.+++|+.|++++|++++..|..+.+++.|+.|++++|++++..+..+..++.|+
T Consensus       383 ~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  455 (968)
T PLN00113        383 FKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQ  455 (968)
T ss_pred             CEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCc
Confidence                            344455555555555555555555555555566666666665555555555555544

>KOG4237|consensus

Probab=99.94  E-value=2.9e-28  Score=214.31  Aligned_cols=228  Identities=29%  Similarity=0.450  Sum_probs=184.2

Q ss_pred             CCCCCCCCcccC-CCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCC
Q psy8550         104 SAFCPPDCDCND-ETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEP  181 (332)
Q Consensus       104 ~~~~p~~c~c~~-~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~  181 (332)
                      ...||..|.|.. +-..|+|++.+++++|.++|+....++|..|.|+.||+ +|+.+.+|+.||+++|.|+.|.|++|.+
T Consensus        34 ~~~CP~pC~Cs~~~g~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~G  113 (498)
T KOG4237|consen   34 ASACPAPCTCSDVEGGIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKG  113 (498)
T ss_pred             cccCCCCcccCCCCCceEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhh
Confidence            457999999986 23479999999999999999999999999999999999 9999999999999999999999999999


Q ss_pred             CCCCcEEEcCC-CcccccCccccCCCCCCCEEEccCCC------------------------CCCCCccccCCCCCCcEe
Q psy8550         182 QEKLVELQLNH-NKLSSVNNKTFIGLKSLKVLNLRGNF------------------------LEDLPDRLFAPLSHLEEL  236 (332)
Q Consensus       182 l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~------------------------l~~~~~~~~~~l~~L~~L  236 (332)
                      +.++..|-+-+ |+|+.++...|+++.+++.|.+.-|+                        +..++...|..+..++.+
T Consensus       114 L~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tl  193 (498)
T KOG4237|consen  114 LASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTL  193 (498)
T ss_pred             hHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchH
Confidence            99988887765 89998877777776555555554444                        444444444444444444


Q ss_pred             eccCCCCc-------------------------------------------------------------cc-ChhhcCCC
Q psy8550         237 DLGQNRIS-------------------------------------------------------------RI-DQACFEGL  254 (332)
Q Consensus       237 ~L~~n~l~-------------------------------------------------------------~~-~~~~~~~l  254 (332)
                      .+..|.+-                                                             .+ +...|..+
T Consensus       194 hlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L  273 (498)
T KOG4237|consen  194 HLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKL  273 (498)
T ss_pred             hhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhc
Confidence            44333200                                                             00 11336778


Q ss_pred             CCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCccc
Q psy8550         255 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHW  331 (332)
Q Consensus       255 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~  331 (332)
                      ++|++|++++|+++++.+.+|..+.+++.|+|..|++..+....|.++..|++|+|.+|+|+.+.+.+|..+..|..
T Consensus       274 ~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~  350 (498)
T KOG4237|consen  274 PNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLST  350 (498)
T ss_pred             ccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeee
Confidence            88999999999999999999999999999999999999888889999999999999999999999999998887764

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.93  E-value=8.5e-26  Score=233.62  Aligned_cols=298  Identities=23%  Similarity=0.144  Sum_probs=177.9

Q ss_pred             hhcCCCCCCCCCCccCCchhhHhhh-hccchhhhhhhhhhhhhcCccccchhhhhHHHHHHH-HHHHHHHhhcCCCCCCC
Q psy8550          32 YKLHPGFQNNPKSNFKSPTEILKSL-LIIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLV-TTALLLLVHQASAFCPP  109 (332)
Q Consensus        32 ~~~~~g~~~~p~~~~~~~~~~~~~l-~~iP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~  109 (332)
                      +..|.|+..-....+..+++....+ ..+|..+..+.+|+.|++++|.+++..+......+. +..+.+..+......|.
T Consensus        57 ~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~  136 (968)
T PLN00113         57 VCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR  136 (968)
T ss_pred             CCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc
Confidence            4466676654333345555544333 456788999999999999998887544333211000 00000001111111121


Q ss_pred             CCcccCCCceEEecCCCcc-ccCCCCC--CCccEEEeecCCCc-cchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCC
Q psy8550         110 DCDCNDETLVVTCKEANLD-VIPITLN--PSIQRLVLKYNRIK-TVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKL  185 (332)
Q Consensus       110 ~c~c~~~~~~~~c~~~~l~-~lp~~~~--~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L  185 (332)
                        .....++.++..++.+. .+|..+.  ++|++|++++|.+. .+|..++++++|++|++++|.+....|..++.+++|
T Consensus       137 --~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  214 (968)
T PLN00113        137 --GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSL  214 (968)
T ss_pred             --cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCc
Confidence              11233445555555554 3444333  56666666666654 555566666666666666666665555666666666


Q ss_pred             cEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCC
Q psy8550         186 VELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDN  265 (332)
Q Consensus       186 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  265 (332)
                      ++|++++|.+.+..|..++++++|++|++++|.+....+..++.+++|+.|++++|.+.+..|..+.++++|+.|++++|
T Consensus       215 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  294 (968)
T PLN00113        215 KWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN  294 (968)
T ss_pred             cEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCC
Confidence            66666666666655666666666666666666666544444566666777777766666555555666667777777777


Q ss_pred             CCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCccc
Q psy8550         266 QLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHW  331 (332)
Q Consensus       266 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~  331 (332)
                      .+.+..+..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..|..++.++.|+.
T Consensus       295 ~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~  360 (968)
T PLN00113        295 SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTV  360 (968)
T ss_pred             eeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcE
Confidence            766655556666777777777777777666666777777777777777777666666666666543

>KOG4194|consensus

Probab=99.93  E-value=1.2e-26  Score=212.96  Aligned_cols=232  Identities=28%  Similarity=0.447  Sum_probs=133.8

Q ss_pred             HhhcCCCCCCCCCcccCCCceEEecCCCcccc-----CCCCCCCccEEEeecCCCccchh-hhcC---------------
Q psy8550          99 LVHQASAFCPPDCDCNDETLVVTCKEANLDVI-----PITLNPSIQRLVLKYNRIKTVDS-AIQF---------------  157 (332)
Q Consensus        99 ~~~~~~~~~p~~c~c~~~~~~~~c~~~~l~~l-----p~~~~~~L~~L~l~~~~l~~l~~-~~~~---------------  157 (332)
                      ........||..|.|...  .++|++..++.+     +..+|...+.|++++|.+..+.. .|.+               
T Consensus        38 ~ga~~~~~cpa~c~c~~~--lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt  115 (873)
T KOG4194|consen   38 AGAGDLSECPATCPCNTR--LLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT  115 (873)
T ss_pred             cCCCccccCCCcCCCCce--eeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh
Confidence            333444589999999865  488888887764     33444444444444444443322 2233               


Q ss_pred             --------------------------------CCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCC
Q psy8550         158 --------------------------------YSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIG  205 (332)
Q Consensus       158 --------------------------------l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  205 (332)
                                                      ++.|+.||++.|.|++++..+|..-.++++|+|++|.|+.+....|.+
T Consensus       116 ~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~  195 (873)
T KOG4194|consen  116 RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDS  195 (873)
T ss_pred             hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccc
Confidence                                            333333344444444444444444445555555555555555555555


Q ss_pred             CCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEE
Q psy8550         206 LKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELR  285 (332)
Q Consensus       206 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  285 (332)
                      +.+|..|.|++|+++.+|...|..+++|+.|+|..|.|..+..-.|.++++|+.|.|..|.+..+..+.|-.+.++++|+
T Consensus       196 lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~  275 (873)
T KOG4194|consen  196 LNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLN  275 (873)
T ss_pred             cchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceee
Confidence            55555666666666666665555566666666666655554444455555555555555556555566666666666666


Q ss_pred             cCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCcccC
Q psy8550         286 VGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHWI  332 (332)
Q Consensus       286 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~l  332 (332)
                      |+.|++...-..++.+++.|+.|+||+|.|..|.+.+++.+++|++|
T Consensus       276 L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~L  322 (873)
T KOG4194|consen  276 LETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKEL  322 (873)
T ss_pred             cccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeE
Confidence            66666666666666666666666666666666666666666666553

>KOG0444|consensus

Probab=99.87  E-value=1e-24  Score=201.86  Aligned_cols=212  Identities=24%  Similarity=0.320  Sum_probs=112.1

Q ss_pred             hcCCCCCCCCCcccCCCceEEecCCCccccCCCCC---CCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCC
Q psy8550         101 HQASAFCPPDCDCNDETLVVTCKEANLDVIPITLN---PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIR  177 (332)
Q Consensus       101 ~~~~~~~p~~c~c~~~~~~~~c~~~~l~~lp~~~~---~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~  177 (332)
                      ++....||..........+++.+.++++.+|..+.   ..+-.|||++|.+..+|+-+..+..|++|.+++|.+....-.
T Consensus       112 hNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLr  191 (1255)
T KOG0444|consen  112 HNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLR  191 (1255)
T ss_pred             hhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHh
Confidence            33333444444444444455555555555555444   334445555565556665555556666666666554433323


Q ss_pred             CCCCCCCCcEEEcCCCcccc-cCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCC
Q psy8550         178 GFEPQEKLVELQLNHNKLSS-VNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTA  256 (332)
Q Consensus       178 ~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  256 (332)
                      .+..+++|++|.+++++-+- -.|.++.++.+|..+|++.|.+..+|+.. .++.+|+.|+|++|+|+.+... .+...+
T Consensus       192 QLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecl-y~l~~LrrLNLS~N~iteL~~~-~~~W~~  269 (1255)
T KOG0444|consen  192 QLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECL-YKLRNLRRLNLSGNKITELNMT-EGEWEN  269 (1255)
T ss_pred             cCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHH-hhhhhhheeccCcCceeeeecc-HHHHhh
Confidence            33334444444444432221 12445556666666777777776666653 5566777777777776665332 334456


Q ss_pred             CcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCC--ccCchhcCCCCCCCEEEccCCCCC
Q psy8550         257 LRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFT--TLADGAFNGLGRLSALDLRGAGLT  316 (332)
Q Consensus       257 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~  316 (332)
                      |++|++++|+++.+|. .+..+++|+.|++.+|+++  |+|. .++++..|+++..++|++.
T Consensus       270 lEtLNlSrNQLt~LP~-avcKL~kL~kLy~n~NkL~FeGiPS-GIGKL~~Levf~aanN~LE  329 (1255)
T KOG0444|consen  270 LETLNLSRNQLTVLPD-AVCKLTKLTKLYANNNKLTFEGIPS-GIGKLIQLEVFHAANNKLE  329 (1255)
T ss_pred             hhhhccccchhccchH-HHhhhHHHHHHHhccCcccccCCcc-chhhhhhhHHHHhhccccc
Confidence            6666666666666655 5556666666666666554  3332 3444444444444444333

>KOG0472|consensus

Probab=99.85  E-value=3.5e-24  Score=189.16  Aligned_cols=247  Identities=26%  Similarity=0.366  Sum_probs=209.2

Q ss_pred             CchhhHhhhhccchhhhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCcccCCCceEEecCCCc
Q psy8550          48 SPTEILKSLLIIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKEANL  127 (332)
Q Consensus        48 ~~~~~~~~l~~iP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~c~c~~~~~~~~c~~~~l  127 (332)
                      .+......+.++|++++.+.+++.+..+.+..+..++. +.+.                        .....++|..+.+
T Consensus        72 vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~-i~s~------------------------~~l~~l~~s~n~~  126 (565)
T KOG0472|consen   72 VLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQ-IGSL------------------------ISLVKLDCSSNEL  126 (565)
T ss_pred             EEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHH-Hhhh------------------------hhhhhhhccccce
Confidence            34444556678888888888888777777766665432 2222                        2233578888888


Q ss_pred             cccCCCCC--CCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCC
Q psy8550         128 DVIPITLN--PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIG  205 (332)
Q Consensus       128 ~~lp~~~~--~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  205 (332)
                      .++|++++  ..+..++..+|+++++|+.++++.++..+++.+|.+...++..+. ++.|++|+...|-++.+ |..+++
T Consensus       127 ~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~tl-P~~lg~  204 (565)
T KOG0472|consen  127 KELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLETL-PPELGG  204 (565)
T ss_pred             eecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhhcC-Chhhcc
Confidence            88998887  577888889999999999999999999999999999999977666 99999999999998888 557899


Q ss_pred             CCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEE
Q psy8550         206 LKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELR  285 (332)
Q Consensus       206 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  285 (332)
                      +.+|..|++..|++..+|+  |+.+..|.++.++.|++..++.+...++.++.+|++.+|+++..|. .+..+.+|++||
T Consensus       205 l~~L~~LyL~~Nki~~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pd-e~clLrsL~rLD  281 (565)
T KOG0472|consen  205 LESLELLYLRRNKIRFLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPD-EICLLRSLERLD  281 (565)
T ss_pred             hhhhHHHHhhhcccccCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCch-HHHHhhhhhhhc
Confidence            9999999999999999995  7889999999999999999988877899999999999999999998 567889999999


Q ss_pred             cCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCC
Q psy8550         286 VGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALG  326 (332)
Q Consensus       286 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l  326 (332)
                      +++|.+++.++ .++++ .|+.|-+.||.+.+|-.+.+++.
T Consensus       282 lSNN~is~Lp~-sLgnl-hL~~L~leGNPlrTiRr~ii~~g  320 (565)
T KOG0472|consen  282 LSNNDISSLPY-SLGNL-HLKFLALEGNPLRTIRREIISKG  320 (565)
T ss_pred             ccCCccccCCc-ccccc-eeeehhhcCCchHHHHHHHHccc
Confidence            99999999988 79999 99999999999999887776653

>KOG0444|consensus

Probab=99.85  E-value=4.4e-23  Score=191.17  Aligned_cols=276  Identities=22%  Similarity=0.256  Sum_probs=203.0

Q ss_pred             cCCchhhHhhhhccchhhhhhhhhhhhhcCccccchhhhh-H-HHHHHHHHHHHHHhhcCCCCCCCCCcccCCCceEEec
Q psy8550          46 FKSPTEILKSLLIIPFEVRILNKLRIFINDSVLFSSVSDI-T-MWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCK  123 (332)
Q Consensus        46 ~~~~~~~~~~l~~iP~~~~~l~~L~~l~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~p~~c~c~~~~~~~~c~  123 (332)
                      ...+.+.+..+..+|++++.+.+|+.|.+..|........ + ..++....  +-...-.....|........+..++.+
T Consensus        34 ~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~--~R~N~LKnsGiP~diF~l~dLt~lDLS  111 (1255)
T KOG0444|consen   34 MTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVI--VRDNNLKNSGIPTDIFRLKDLTILDLS  111 (1255)
T ss_pred             eeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHh--hhccccccCCCCchhcccccceeeecc
Confidence            3556666778899999999999999887777655543211 0 00111111  111111223466666777777778888


Q ss_pred             CCCccccCCCCC--CCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCc
Q psy8550         124 EANLDVIPITLN--PSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNN  200 (332)
Q Consensus       124 ~~~l~~lp~~~~--~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  200 (332)
                      .+.+.++|..+-  ++.-.|+|++|+|.+||. -+-+++.|-.||+++|++..+|| .+..+..|++|.+++|.+....-
T Consensus       112 hNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPP-Q~RRL~~LqtL~Ls~NPL~hfQL  190 (1255)
T KOG0444|consen  112 HNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPP-QIRRLSMLQTLKLSNNPLNHFQL  190 (1255)
T ss_pred             hhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCH-HHHHHhhhhhhhcCCChhhHHHH
Confidence            888888887664  677788888888888887 56677888888888888877774 56777888888888887766554


Q ss_pred             cccCCCCCCCEEEccCCC--CCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCC
Q psy8550         201 KTFIGLKSLKVLNLRGNF--LEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYL  278 (332)
Q Consensus       201 ~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  278 (332)
                      ..+..+++|+.|.+++..  +..+|++ +..+.+|..+|++.|.+..+ |+.+..+++|+.|+|++|+++.+.. ..+.+
T Consensus       191 rQLPsmtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS~N~Lp~v-Pecly~l~~LrrLNLS~N~iteL~~-~~~~W  267 (1255)
T KOG0444|consen  191 RQLPSMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLSENNLPIV-PECLYKLRNLRRLNLSGNKITELNM-TEGEW  267 (1255)
T ss_pred             hcCccchhhhhhhcccccchhhcCCCc-hhhhhhhhhccccccCCCcc-hHHHhhhhhhheeccCcCceeeeec-cHHHH
Confidence            556667788888888765  3467766 47889999999999999877 6778889999999999999998765 56677


Q ss_pred             CCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCC--CCcccccccCCCCc
Q psy8550         279 GMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGL--TNMMGHSMALGDYL  329 (332)
Q Consensus       279 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l--~~l~~~~~~~l~~L  329 (332)
                      .+|+.|+++.|+++..|. ++.+++.|+.|.+.+|++  .+||. .++.+..|
T Consensus       268 ~~lEtLNlSrNQLt~LP~-avcKL~kL~kLy~n~NkL~FeGiPS-GIGKL~~L  318 (1255)
T KOG0444|consen  268 ENLETLNLSRNQLTVLPD-AVCKLTKLTKLYANNNKLTFEGIPS-GIGKLIQL  318 (1255)
T ss_pred             hhhhhhccccchhccchH-HHhhhHHHHHHHhccCcccccCCcc-chhhhhhh
Confidence            899999999999998876 899999999999999975  57754 55555444

>KOG0472|consensus

Probab=99.85  E-value=5.3e-22  Score=175.47  Aligned_cols=92  Identities=24%  Similarity=0.329  Sum_probs=68.8

Q ss_pred             CCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCC-----------------------CcCcccccCCCCccEE
Q psy8550         228 APLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLR-----------------------SVPTPSFIYLGMLAEL  284 (332)
Q Consensus       228 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-----------------------~~~~~~~~~l~~L~~L  284 (332)
                      +.+++|..|++++|.+..++. .++.+..|+.++++.|.+.                       .+++..+.++.+|.+|
T Consensus       432 ~~l~kLt~L~L~NN~Ln~LP~-e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tL  510 (565)
T KOG0472|consen  432 SQLQKLTFLDLSNNLLNDLPE-EMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTL  510 (565)
T ss_pred             Hhhhcceeeecccchhhhcch-hhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhccee
Confidence            445567777777777666633 3555666777776655544                       4445457788999999


Q ss_pred             EcCCCcCCccCchhcCCCCCCCEEEccCCCCCCccccc
Q psy8550         285 RVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHS  322 (332)
Q Consensus       285 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~  322 (332)
                      ||.+|.+..+|| .+++|++|+.|++.||.++ .|++.
T Consensus       511 DL~nNdlq~IPp-~LgnmtnL~hLeL~gNpfr-~Pr~~  546 (565)
T KOG0472|consen  511 DLQNNDLQQIPP-ILGNMTNLRHLELDGNPFR-QPRHQ  546 (565)
T ss_pred             ccCCCchhhCCh-hhccccceeEEEecCCccC-CCHHH
Confidence            999999999998 7999999999999999998 66554

>KOG0618|consensus

Probab=99.76  E-value=1.2e-20  Score=181.63  Aligned_cols=258  Identities=23%  Similarity=0.279  Sum_probs=209.2

Q ss_pred             CccCCchhhHhhhhccchhhhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCcccCCCceEEec
Q psy8550          44 SNFKSPTEILKSLLIIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCK  123 (332)
Q Consensus        44 ~~~~~~~~~~~~l~~iP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~c~c~~~~~~~~c~  123 (332)
                      +.+.+++.+...+..+|+.++.+.+|+.+....|.+..                         .|..|.|...++.+.|.
T Consensus       241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~-------------------------lp~ri~~~~~L~~l~~~  295 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVA-------------------------LPLRISRITSLVSLSAA  295 (1081)
T ss_pred             ccceeeecchhhhhcchHHHHhcccceEecccchhHHh-------------------------hHHHHhhhhhHHHHHhh
Confidence            55677788888888999889999888887777765522                         34455666666678888


Q ss_pred             CCCccccCCCCC--CCccEEEeecCCCccchh-hhcCCCC-CcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccC
Q psy8550         124 EANLDVIPITLN--PSIQRLVLKYNRIKTVDS-AIQFYSS-LQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVN  199 (332)
Q Consensus       124 ~~~l~~lp~~~~--~~L~~L~l~~~~l~~l~~-~~~~l~~-L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  199 (332)
                      .+.++.+|....  +++++|+|..|.+..+|+ .+..... ++.|+.+.+.+...+.-.=..++.|+.|.+.+|.++.-.
T Consensus       296 ~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c  375 (1081)
T KOG0618|consen  296 YNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSC  375 (1081)
T ss_pred             hhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccc
Confidence            999999987664  789999999999999998 4444433 788888888888776433345678999999999999876


Q ss_pred             ccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCC
Q psy8550         200 NKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLG  279 (332)
Q Consensus       200 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  279 (332)
                      -..+.+..+|+.|+|++|++..+|...+.++..|+.|+|+||+++.++ +.+..+..|++|...+|++..+|  .+..++
T Consensus       376 ~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-~tva~~~~L~tL~ahsN~l~~fP--e~~~l~  452 (1081)
T KOG0618|consen  376 FPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP-DTVANLGRLHTLRAHSNQLLSFP--ELAQLP  452 (1081)
T ss_pred             hhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh-HHHHhhhhhHHHhhcCCceeech--hhhhcC
Confidence            667889999999999999999999999999999999999999999994 67888999999999999999998  588999


Q ss_pred             CccEEEcCCCcCCccC-chhcCCCCCCCEEEccCCCCCCcccccccCCCCcc
Q psy8550         280 MLAELRVGLNVFTTLA-DGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLH  330 (332)
Q Consensus       280 ~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~  330 (332)
                      .|+.+|++.|+++... +..... ++|++||++||.-...+...|..+.++.
T Consensus       453 qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~  503 (1081)
T KOG0618|consen  453 QLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLS  503 (1081)
T ss_pred             cceEEecccchhhhhhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhh
Confidence            9999999999998653 333332 7999999999976556666666555543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.74  E-value=8.6e-18  Score=165.49  Aligned_cols=184  Identities=25%  Similarity=0.284  Sum_probs=105.4

Q ss_pred             eEEecCCCccccCCCCCCCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCC-----------------
Q psy8550         119 VVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEP-----------------  181 (332)
Q Consensus       119 ~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~-----------------  181 (332)
                      .+++.++.+..+|. ++.+++.|++++|.++.+|..   .++|+.|++++|++..++. ....                 
T Consensus       266 ~L~Ls~N~L~~Lp~-lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~-lp~~L~~L~Ls~N~L~~LP~l  340 (788)
T PRK15387        266 ELSIFSNPLTHLPA-LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA-LPSELCKLWAYNNQLTSLPTL  340 (788)
T ss_pred             eeeccCCchhhhhh-chhhcCEEECcCCcccccccc---ccccceeECCCCccccCCC-CcccccccccccCcccccccc
Confidence            45555555555553 345566666666666666542   3556666666666666542 1100                 


Q ss_pred             CCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEe
Q psy8550         182 QEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILY  261 (332)
Q Consensus       182 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  261 (332)
                      ..+|+.|++++|+++.+++ .   ..+|+.|++++|.++.+|..    ..+|+.|++++|.++.++..    .++|+.|+
T Consensus       341 p~~Lq~LdLS~N~Ls~LP~-l---p~~L~~L~Ls~N~L~~LP~l----~~~L~~LdLs~N~Lt~LP~l----~s~L~~Ld  408 (788)
T PRK15387        341 PSGLQELSVSDNQLASLPT-L---PSELYKLWAYNNRLTSLPAL----PSGLKELIVSGNRLTSLPVL----PSELKELM  408 (788)
T ss_pred             ccccceEecCCCccCCCCC-C---CcccceehhhccccccCccc----ccccceEEecCCcccCCCCc----ccCCCEEE
Confidence            0134444444444444321 1   12344444444444444321    23566677777766655321    24677777


Q ss_pred             CCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCccccccc
Q psy8550         262 LDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMA  324 (332)
Q Consensus       262 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~  324 (332)
                      +++|.++++|. .   +.+|+.|++++|+++.+| ..+.++++|+.|+|++|++++..+..+.
T Consensus       409 LS~N~LssIP~-l---~~~L~~L~Ls~NqLt~LP-~sl~~L~~L~~LdLs~N~Ls~~~~~~L~  466 (788)
T PRK15387        409 VSGNRLTSLPM-L---PSGLLSLSVYRNQLTRLP-ESLIHLSSETTVNLEGNPLSERTLQALR  466 (788)
T ss_pred             ccCCcCCCCCc-c---hhhhhhhhhccCcccccC-hHHhhccCCCeEECCCCCCCchHHHHHH
Confidence            77777777664 1   346677888888887654 4677888888888888888877666553

>KOG4237|consensus

Probab=99.74  E-value=8.1e-20  Score=161.35  Aligned_cols=201  Identities=32%  Similarity=0.445  Sum_probs=166.7

Q ss_pred             CCceEEecCCCccccCCCCC---CCccEEEeecCCCccchh-hhcCCCCCcEEEeec-CcCcccCCCCCCCCCCCcEEEc
Q psy8550         116 ETLVVTCKEANLDVIPITLN---PSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSH-NQLVNIPIRGFEPQEKLVELQL  190 (332)
Q Consensus       116 ~~~~~~c~~~~l~~lp~~~~---~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~-~~l~~~~~~~~~~l~~L~~L~l  190 (332)
                      +...+..+.+.++.+|.+..   ++|++|||++|.|+.|.+ +|.++.++.+|.+.+ |+|+.++.+.|+++.+++.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            44568889999999998765   789999999999998866 999999999988887 8999999989988887777776


Q ss_pred             CCCcccccCcc------------------------ccCCCCCCCEEEccCCCC---------------------------
Q psy8550         191 NHNKLSSVNNK------------------------TFIGLKSLKVLNLRGNFL---------------------------  219 (332)
Q Consensus       191 ~~n~l~~~~~~------------------------~~~~l~~L~~L~L~~n~l---------------------------  219 (332)
                      .-|++.-+..+                        .|..+.+++++.+..|.+                           
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~  227 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS  227 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence            66655443333                        444445555555544431                           


Q ss_pred             -----------------------------------CCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCC
Q psy8550         220 -----------------------------------EDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDD  264 (332)
Q Consensus       220 -----------------------------------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  264 (332)
                                                         ...|...|..+++|+.|++++|+++.+.+.+|.....++.|.|..
T Consensus       228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~  307 (498)
T KOG4237|consen  228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR  307 (498)
T ss_pred             hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence                                               112234467889999999999999999999999999999999999


Q ss_pred             CCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCC
Q psy8550         265 NQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT  316 (332)
Q Consensus       265 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  316 (332)
                      |++..+....|.++..|+.|+|.+|+|+.+.|.+|..+.+|.+|+|-.|.+.
T Consensus       308 N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  308 NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             chHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence            9999999999999999999999999999999999999999999999888653

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.74  E-value=1e-17  Score=164.91  Aligned_cols=163  Identities=26%  Similarity=0.317  Sum_probs=125.6

Q ss_pred             CceEEecCCCccccCCCCCCCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCccc
Q psy8550         117 TLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLS  196 (332)
Q Consensus       117 ~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~  196 (332)
                      +..++++++.+..+|. ++.+++.|++++|.++.+|..   ..+|+.|++++|+++.+++ .   ..+|+.|++++|+++
T Consensus       304 L~~LdLS~N~L~~Lp~-lp~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~Ls~LP~-l---p~~L~~L~Ls~N~L~  375 (788)
T PRK15387        304 LQELSVSDNQLASLPA-LPSELCKLWAYNNQLTSLPTL---PSGLQELSVSDNQLASLPT-L---PSELYKLWAYNNRLT  375 (788)
T ss_pred             cceeECCCCccccCCC-CcccccccccccCcccccccc---ccccceEecCCCccCCCCC-C---Ccccceehhhccccc
Confidence            4455666666666553 445566666666666665531   2479999999999998874 2   357889999999999


Q ss_pred             ccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCccccc
Q psy8550         197 SVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFI  276 (332)
Q Consensus       197 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  276 (332)
                      .++ ..   ..+|+.|++++|.++.+|..    .++|+.|++++|.++.++. .   ..+|+.|++++|+++.+|. .++
T Consensus       376 ~LP-~l---~~~L~~LdLs~N~Lt~LP~l----~s~L~~LdLS~N~LssIP~-l---~~~L~~L~Ls~NqLt~LP~-sl~  442 (788)
T PRK15387        376 SLP-AL---PSGLKELIVSGNRLTSLPVL----PSELKELMVSGNRLTSLPM-L---PSGLLSLSVYRNQLTRLPE-SLI  442 (788)
T ss_pred             cCc-cc---ccccceEEecCCcccCCCCc----ccCCCEEEccCCcCCCCCc-c---hhhhhhhhhccCcccccCh-HHh
Confidence            874 32   35799999999999988863    3679999999999998753 2   3468889999999999876 688


Q ss_pred             CCCCccEEEcCCCcCCccCchhcC
Q psy8550         277 YLGMLAELRVGLNVFTTLADGAFN  300 (332)
Q Consensus       277 ~l~~L~~L~L~~n~l~~~~~~~~~  300 (332)
                      .+++|+.+++++|++++..+..+.
T Consensus       443 ~L~~L~~LdLs~N~Ls~~~~~~L~  466 (788)
T PRK15387        443 HLSSETTVNLEGNPLSERTLQALR  466 (788)
T ss_pred             hccCCCeEECCCCCCCchHHHHHH
Confidence            999999999999999988776663

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.73  E-value=4.7e-18  Score=167.96  Aligned_cols=181  Identities=19%  Similarity=0.282  Sum_probs=97.8

Q ss_pred             eEEecCCCccccCCCCCCCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCccccc
Q psy8550         119 VVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSV  198 (332)
Q Consensus       119 ~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  198 (332)
                      .+.++++.+..+|..++.+|+.|++++|+++.+|..+.  .+|+.|++++|+++.++. .+  .++|+.|++++|.++.+
T Consensus       245 ~L~Ls~N~L~~LP~~l~s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~-~l--p~sL~~L~Ls~N~Lt~L  319 (754)
T PRK15370        245 EMELSINRITELPERLPSALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPA-HL--PSGITHLNVQSNSLTAL  319 (754)
T ss_pred             EEECcCCccCcCChhHhCCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcc-cc--hhhHHHHHhcCCccccC
Confidence            45555555555555555556666666665555554332  355666666665555542 11  13455556666655554


Q ss_pred             CccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCC
Q psy8550         199 NNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYL  278 (332)
Q Consensus       199 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  278 (332)
                      ++ .+  .++|+.|++++|.++.+|...   .++|+.|++++|.++.++. .+.  ++|+.|++++|.++.+|+. +.  
T Consensus       320 P~-~l--~~sL~~L~Ls~N~Lt~LP~~l---~~sL~~L~Ls~N~L~~LP~-~lp--~~L~~LdLs~N~Lt~LP~~-l~--  387 (754)
T PRK15370        320 PE-TL--PPGLKTLEAGENALTSLPASL---PPELQVLDVSKNQITVLPE-TLP--PTITTLDVSRNALTNLPEN-LP--  387 (754)
T ss_pred             Cc-cc--cccceeccccCCccccCChhh---cCcccEEECCCCCCCcCCh-hhc--CCcCEEECCCCcCCCCCHh-HH--
Confidence            22 21  145666666666666655432   2456666666666665533 222  4566666666666666552 21  


Q ss_pred             CCccEEEcCCCcCCccCc---hhcCCCCCCCEEEccCCCCC
Q psy8550         279 GMLAELRVGLNVFTTLAD---GAFNGLGRLSALDLRGAGLT  316 (332)
Q Consensus       279 ~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~Ls~n~l~  316 (332)
                      ..|+.|++++|++++++.   ..++.++.+..+++.+|.++
T Consensus       388 ~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        388 AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            246666666666665432   22333456666666666653

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.71  E-value=7.2e-17  Score=159.64  Aligned_cols=190  Identities=25%  Similarity=0.351  Sum_probs=126.2

Q ss_pred             CceEEecCCCccccCCCCCCCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCccc
Q psy8550         117 TLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLS  196 (332)
Q Consensus       117 ~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~  196 (332)
                      ...+.+.+..++.+|..++++++.|++++|.++.+|..+.  .+|++|++++|.++.++. .+  ..+|+.|++++|.+.
T Consensus       180 ~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~-~l--~~~L~~L~Ls~N~L~  254 (754)
T PRK15370        180 KTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPA-TL--PDTIQEMELSINRIT  254 (754)
T ss_pred             ceEEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCCh-hh--hccccEEECcCCccC
Confidence            3467778888888888888888888888888888887554  478888888888887763 22  235777777777776


Q ss_pred             ccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhc------------------CCCCCCc
Q psy8550         197 SVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACF------------------EGLTALR  258 (332)
Q Consensus       197 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~------------------~~l~~L~  258 (332)
                      .++ ..+.  .+|+.|++++|+++.+|... .  .+|+.|++++|.++.++....                  .-.++|+
T Consensus       255 ~LP-~~l~--s~L~~L~Ls~N~L~~LP~~l-~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~  328 (754)
T PRK15370        255 ELP-ERLP--SALQSLDLFHNKISCLPENL-P--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLK  328 (754)
T ss_pred             cCC-hhHh--CCCCEEECcCCccCcccccc-C--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccce
Confidence            653 3332  35667777777666665543 1  356666666666665432110                  0124566


Q ss_pred             EEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccc
Q psy8550         259 ILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSM  323 (332)
Q Consensus       259 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~  323 (332)
                      .|++++|.++++|. .+  .++|+.|++++|+++.++. .+.  ++|+.|++++|+++.+|+...
T Consensus       329 ~L~Ls~N~Lt~LP~-~l--~~sL~~L~Ls~N~L~~LP~-~lp--~~L~~LdLs~N~Lt~LP~~l~  387 (754)
T PRK15370        329 TLEAGENALTSLPA-SL--PPELQVLDVSKNQITVLPE-TLP--PTITTLDVSRNALTNLPENLP  387 (754)
T ss_pred             eccccCCccccCCh-hh--cCcccEEECCCCCCCcCCh-hhc--CCcCEEECCCCcCCCCCHhHH
Confidence            77777777776654 22  3578888888888876554 332  578888888888888876543

>KOG0617|consensus

Probab=99.69  E-value=3.5e-19  Score=141.00  Aligned_cols=170  Identities=30%  Similarity=0.395  Sum_probs=139.8

Q ss_pred             ccccCCCCC-CCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCC
Q psy8550         127 LDVIPITLN-PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIG  205 (332)
Q Consensus       127 l~~lp~~~~-~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  205 (332)
                      ..++|.-+. .+++.|.+++|+++.+|+.++.+.+|+.|++.+|++.+++ .+++.+++|+.|+++-|++..+ |..|+.
T Consensus        23 f~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp-~~issl~klr~lnvgmnrl~~l-prgfgs  100 (264)
T KOG0617|consen   23 FEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELP-TSISSLPKLRILNVGMNRLNIL-PRGFGS  100 (264)
T ss_pred             HhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcC-hhhhhchhhhheecchhhhhcC-ccccCC
Confidence            334443332 6788899999999999999999999999999999999988 5788899999999998888766 788999


Q ss_pred             CCCCCEEEccCCCCCC-CCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEE
Q psy8550         206 LKSLKVLNLRGNFLED-LPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAEL  284 (332)
Q Consensus       206 l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  284 (332)
                      ++.|+.||+.+|.+.+ .-|+-|-.++.|+.|++++|.+..++++ ++.+++|+.|.+..|.+..+|. .++.+..|+.|
T Consensus       101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~d-vg~lt~lqil~lrdndll~lpk-eig~lt~lrel  178 (264)
T KOG0617|consen  101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPD-VGKLTNLQILSLRDNDLLSLPK-EIGDLTRLREL  178 (264)
T ss_pred             CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChh-hhhhcceeEEeeccCchhhCcH-HHHHHHHHHHH
Confidence            9999999999998863 2234455678888999999999877554 8889999999999999988887 78888999999


Q ss_pred             EcCCCcCCccCchhcCC
Q psy8550         285 RVGLNVFTTLADGAFNG  301 (332)
Q Consensus       285 ~L~~n~l~~~~~~~~~~  301 (332)
                      +++||+++.++| .+++
T Consensus       179 hiqgnrl~vlpp-el~~  194 (264)
T KOG0617|consen  179 HIQGNRLTVLPP-ELAN  194 (264)
T ss_pred             hcccceeeecCh-hhhh
Confidence            999999998888 3444

>KOG0617|consensus

Probab=99.69  E-value=3.9e-19  Score=140.71  Aligned_cols=164  Identities=29%  Similarity=0.394  Sum_probs=146.7

Q ss_pred             hhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCC
Q psy8550         154 AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHL  233 (332)
Q Consensus       154 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  233 (332)
                      .+..+++++.|.+++|+++.++| .++.+.+|+.|++.+|+++.+ |..++.+++|+.|++..|++..+|.+ |+.++.|
T Consensus        28 gLf~~s~ITrLtLSHNKl~~vpp-nia~l~nlevln~~nnqie~l-p~~issl~klr~lnvgmnrl~~lprg-fgs~p~l  104 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLTVVPP-NIAELKNLEVLNLSNNQIEEL-PTSISSLPKLRILNVGMNRLNILPRG-FGSFPAL  104 (264)
T ss_pred             cccchhhhhhhhcccCceeecCC-cHHHhhhhhhhhcccchhhhc-ChhhhhchhhhheecchhhhhcCccc-cCCCchh
Confidence            45678899999999999999985 678999999999999999999 66899999999999999999999987 6999999


Q ss_pred             cEeeccCCCCcc-cChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccC
Q psy8550         234 EELDLGQNRISR-IDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG  312 (332)
Q Consensus       234 ~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  312 (332)
                      +.||+.+|.+.+ ..|..|-.++.|+.|++++|.+.-+|+ .++.+++|+.|.++.|.+-..+. .++.++.|++|.+.+
T Consensus       105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~-dvg~lt~lqil~lrdndll~lpk-eig~lt~lrelhiqg  182 (264)
T KOG0617|consen  105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPP-DVGKLTNLQILSLRDNDLLSLPK-EIGDLTRLRELHIQG  182 (264)
T ss_pred             hhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCCh-hhhhhcceeEEeeccCchhhCcH-HHHHHHHHHHHhccc
Confidence            999999998873 234556668899999999999998887 78999999999999999988876 689999999999999


Q ss_pred             CCCCCccccc
Q psy8550         313 AGLTNMMGHS  322 (332)
Q Consensus       313 n~l~~l~~~~  322 (332)
                      |+++.+||+.
T Consensus       183 nrl~vlppel  192 (264)
T KOG0617|consen  183 NRLTVLPPEL  192 (264)
T ss_pred             ceeeecChhh
Confidence            9999999864

>KOG0618|consensus

Probab=99.68  E-value=1.4e-18  Score=167.72  Aligned_cols=183  Identities=30%  Similarity=0.408  Sum_probs=119.0

Q ss_pred             CCCCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEE
Q psy8550         134 LNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLN  213 (332)
Q Consensus       134 ~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  213 (332)
                      .+.+++.++++.|+++.+|+.++.+.+|+.+...+|.+..++ ..+....+|+.|.+.+|.+..++| ...++++|++|+
T Consensus       239 ~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp-~ri~~~~~L~~l~~~~nel~yip~-~le~~~sL~tLd  316 (1081)
T KOG0618|consen  239 VPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALP-LRISRITSLVSLSAAYNELEYIPP-FLEGLKSLRTLD  316 (1081)
T ss_pred             ccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhH-HHHhhhhhHHHHHhhhhhhhhCCC-cccccceeeeee
Confidence            346788888888888888888888888888888888887776 455667788888888888888844 456688888888


Q ss_pred             ccCCCCCCCCccccCCCC-------------------------CCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCC
Q psy8550         214 LRGNFLEDLPDRLFAPLS-------------------------HLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLR  268 (332)
Q Consensus       214 L~~n~l~~~~~~~~~~l~-------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  268 (332)
                      |..|.+..+|+..+..+.                         .|+.|.+.+|.+++-.-..+.+.++|+.|+|++|++.
T Consensus       317 L~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~  396 (1081)
T KOG0618|consen  317 LQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN  396 (1081)
T ss_pred             ehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence            888888877765443322                         2334444444444333333444555555555555555


Q ss_pred             CcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcc
Q psy8550         269 SVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMM  319 (332)
Q Consensus       269 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~  319 (332)
                      .+|...+.++..|++|+|+||+++.++ ..+.++..|++|...+|.+...|
T Consensus       397 ~fpas~~~kle~LeeL~LSGNkL~~Lp-~tva~~~~L~tL~ahsN~l~~fP  446 (1081)
T KOG0618|consen  397 SFPASKLRKLEELEELNLSGNKLTTLP-DTVANLGRLHTLRAHSNQLLSFP  446 (1081)
T ss_pred             cCCHHHHhchHHhHHHhcccchhhhhh-HHHHhhhhhHHHhhcCCceeech
Confidence            555555555555555555555555554 34555555555555555555554

>PLN03210 Resistant to P

Probab=99.67  E-value=1.2e-15  Score=159.66  Aligned_cols=268  Identities=16%  Similarity=0.163  Sum_probs=149.2

Q ss_pred             hheehhhhcCCCCCCCCCCccCCchhhHhhhhccchhhhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCC
Q psy8550          26 DVTYILYKLHPGFQNNPKSNFKSPTEILKSLLIIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASA  105 (332)
Q Consensus        26 ~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~l~~iP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (332)
                      +..+.++...+|...+. .+.-+.... .++..-+..|..|.+|+.|....+.+.......                  .
T Consensus       519 ~di~~vl~~~~g~~~v~-~i~l~~~~~-~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~------------------~  578 (1153)
T PLN03210        519 KDICDVLEDNTGTKKVL-GITLDIDEI-DELHIHENAFKGMRNLLFLKFYTKKWDQKKEVR------------------W  578 (1153)
T ss_pred             HHHHHHHHhCcccceee-EEEeccCcc-ceeeecHHHHhcCccccEEEEecccccccccce------------------e
Confidence            34555666677766544 222222222 233445566999999998766543321100000                  0


Q ss_pred             CCCCCCccc-CCCceEEecCCCccccCCCCC-CCccEEEeecCCCccchhhhcCCCCCcEEEeecCc-CcccCCCCCCCC
Q psy8550         106 FCPPDCDCN-DETLVVTCKEANLDVIPITLN-PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQ-LVNIPIRGFEPQ  182 (332)
Q Consensus       106 ~~p~~c~c~-~~~~~~~c~~~~l~~lp~~~~-~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~-l~~~~~~~~~~l  182 (332)
                      ..|...... ..++.+.+.++.++.+|..+. .+|+.|++.++.+..++..+..+++|+.|+++++. +..++  .+..+
T Consensus       579 ~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip--~ls~l  656 (1153)
T PLN03210        579 HLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP--DLSMA  656 (1153)
T ss_pred             ecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC--ccccC
Confidence            112222222 235566777777777776653 67777777777777777777777777777777664 44443  36667


Q ss_pred             CCCcEEEcCCCcccccCccccCCCCCCCEEEccCC-CCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEe
Q psy8550         183 EKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGN-FLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILY  261 (332)
Q Consensus       183 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  261 (332)
                      ++|++|++++|......|..+.++++|+.|++++| .++.+|...  ++++|+.|++++|......|..   ..+|+.|+
T Consensus       657 ~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~  731 (1153)
T PLN03210        657 TNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPDI---STNISWLD  731 (1153)
T ss_pred             CcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCCCccccccc---cCCcCeee
Confidence            77777777776544444666777777777777775 455565532  4566666666665332221211   23445555


Q ss_pred             CCCCCCCCcCcc-----------------------------cccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccC
Q psy8550         262 LDDNQLRSVPTP-----------------------------SFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG  312 (332)
Q Consensus       262 L~~n~l~~~~~~-----------------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  312 (332)
                      +++|.+..+|..                             .+..+++|+.|++++|...+..|.+++++++|+.|++++
T Consensus       732 L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~  811 (1153)
T PLN03210        732 LDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIEN  811 (1153)
T ss_pred             cCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCC
Confidence            555554444321                             011124556666666655544555566666666666666


Q ss_pred             C-CCCCccc
Q psy8550         313 A-GLTNMMG  320 (332)
Q Consensus       313 n-~l~~l~~  320 (332)
                      | .+..+|.
T Consensus       812 C~~L~~LP~  820 (1153)
T PLN03210        812 CINLETLPT  820 (1153)
T ss_pred             CCCcCeeCC
Confidence            5 3444443

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.60  E-value=3.6e-15  Score=156.14  Aligned_cols=257  Identities=19%  Similarity=0.145  Sum_probs=145.7

Q ss_pred             ccCCchhhHhhhhccchhhhhhhhhhhhhcCcccc-chhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCcccCCCceEEec
Q psy8550          45 NFKSPTEILKSLLIIPFEVRILNKLRIFINDSVLF-SSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCK  123 (332)
Q Consensus        45 ~~~~~~~~~~~l~~iP~~~~~l~~L~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~c~c~~~~~~~~c~  123 (332)
                      .+..+......+..+|+.++.+.+|+.++++++.. ...+...  .+..+..+.+..+......|........+..++..
T Consensus       612 ~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls--~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~  689 (1153)
T PLN03210        612 NLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLS--MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS  689 (1153)
T ss_pred             CCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccc--cCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence            44555566566677787777888888777776432 2211111  00011111111122222334333333444455544


Q ss_pred             C-CCccccCCCCC-CCccEEEeecCC-CccchhhhcCCCCCcEEEeecCcCcccCCC-----------------------
Q psy8550         124 E-ANLDVIPITLN-PSIQRLVLKYNR-IKTVDSAIQFYSSLQHVDLSHNQLVNIPIR-----------------------  177 (332)
Q Consensus       124 ~-~~l~~lp~~~~-~~L~~L~l~~~~-l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~-----------------------  177 (332)
                      + ..++.+|..+. ++|+.|++++|. +..+|..   ..+|++|++++|.+..++..                       
T Consensus       690 ~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~  766 (1153)
T PLN03210        690 RCENLEILPTGINLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERV  766 (1153)
T ss_pred             CCCCcCccCCcCCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccccccccccccccccchhhccccc
Confidence            3 34555555432 455555555543 2233321   23455555555555444321                       


Q ss_pred             ------CCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCC-CCCCCCccccCCCCCCcEeeccCCCCcccChhh
Q psy8550         178 ------GFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGN-FLEDLPDRLFAPLSHLEELDLGQNRISRIDQAC  250 (332)
Q Consensus       178 ------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  250 (332)
                            .+...++|+.|++++|......|..++++++|+.|++++| .++.+|...  .+++|+.|++++|......|. 
T Consensus       767 ~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~--~L~sL~~L~Ls~c~~L~~~p~-  843 (1153)
T PLN03210        767 QPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI--NLESLESLDLSGCSRLRTFPD-  843 (1153)
T ss_pred             cccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC--CccccCEEECCCCCccccccc-
Confidence                  1222356777777777555545677778888888888776 466666543  577788888887643322222 


Q ss_pred             cCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCC-cCCccCchhcCCCCCCCEEEccCC
Q psy8550         251 FEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLN-VFTTLADGAFNGLGRLSALDLRGA  313 (332)
Q Consensus       251 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n  313 (332)
                        ..++|+.|++++|.+..+|. ++..+++|+.|++++| ++..+++ .+..+++|+.+++++|
T Consensus       844 --~~~nL~~L~Ls~n~i~~iP~-si~~l~~L~~L~L~~C~~L~~l~~-~~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        844 --ISTNISDLNLSRTGIEEVPW-WIEKFSNLSFLDMNGCNNLQRVSL-NISKLKHLETVDFSDC  903 (1153)
T ss_pred             --cccccCEeECCCCCCccChH-HHhcCCCCCEEECCCCCCcCccCc-ccccccCCCeeecCCC
Confidence              13567788888888887765 6777888888888874 5555444 5677788888888887

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.54  E-value=1.5e-15  Score=137.70  Aligned_cols=245  Identities=20%  Similarity=0.168  Sum_probs=163.0

Q ss_pred             ccchhhhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCcccCCCceEEecCCCccc-------c
Q psy8550          58 IIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKEANLDV-------I  130 (332)
Q Consensus        58 ~iP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~c~c~~~~~~~~c~~~~l~~-------l  130 (332)
                      ..+..+..+.+|+.+.++++.++..........   .                 ........+.+.++.+..       +
T Consensus        14 ~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~---l-----------------~~~~~l~~l~l~~~~~~~~~~~~~~~   73 (319)
T cd00116          14 RATELLPKLLCLQVLRLEGNTLGEEAAKALASA---L-----------------RPQPSLKELCLSLNETGRIPRGLQSL   73 (319)
T ss_pred             chHHHHHHHhhccEEeecCCCCcHHHHHHHHHH---H-----------------hhCCCceEEeccccccCCcchHHHHH
Confidence            345567777778888888887765322111100   0                 111122234444443331       2


Q ss_pred             CCCC--CCCccEEEeecCCCc-cchhhhcCCCC---CcEEEeecCcCcccC----CCCCCCC-CCCcEEEcCCCcccccC
Q psy8550         131 PITL--NPSIQRLVLKYNRIK-TVDSAIQFYSS---LQHVDLSHNQLVNIP----IRGFEPQ-EKLVELQLNHNKLSSVN  199 (332)
Q Consensus       131 p~~~--~~~L~~L~l~~~~l~-~l~~~~~~l~~---L~~L~l~~~~l~~~~----~~~~~~l-~~L~~L~l~~n~l~~~~  199 (332)
                      +..+  .++++.|++++|.+. ..+..+..+.+   |++|++++|.+....    ...+..+ ++|+.|++++|.+++..
T Consensus        74 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~  153 (319)
T cd00116          74 LQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGAS  153 (319)
T ss_pred             HHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchH
Confidence            2222  268999999999987 34445555555   999999999887311    1344556 89999999999988422


Q ss_pred             ----ccccCCCCCCCEEEccCCCCCCCC----ccccCCCCCCcEeeccCCCCcccCh----hhcCCCCCCcEEeCCCCCC
Q psy8550         200 ----NKTFIGLKSLKVLNLRGNFLEDLP----DRLFAPLSHLEELDLGQNRISRIDQ----ACFEGLTALRILYLDDNQL  267 (332)
Q Consensus       200 ----~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l  267 (332)
                          +..+..+.+|++|++++|.++...    ...+...++|+.|++++|.++....    ..+..+++|++|++++|.+
T Consensus       154 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l  233 (319)
T cd00116         154 CEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL  233 (319)
T ss_pred             HHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcC
Confidence                345667789999999999987421    1123556799999999998875432    3466788999999999998


Q ss_pred             CCcCccccc-----CCCCccEEEcCCCcCCc----cCchhcCCCCCCCEEEccCCCCCCccccc
Q psy8550         268 RSVPTPSFI-----YLGMLAELRVGLNVFTT----LADGAFNGLGRLSALDLRGAGLTNMMGHS  322 (332)
Q Consensus       268 ~~~~~~~~~-----~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~  322 (332)
                      ++.....+.     ..+.|++|++++|.++.    .....+..+++|+++|+++|.++.-+...
T Consensus       234 ~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~  297 (319)
T cd00116         234 TDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQL  297 (319)
T ss_pred             chHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHH
Confidence            863322222     23789999999999972    12345667789999999999998664433

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0532|consensus

Probab=99.43  E-value=4.1e-15  Score=137.27  Aligned_cols=196  Identities=26%  Similarity=0.314  Sum_probs=157.0

Q ss_pred             EEecCCCccccCCCCC----CCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcc
Q psy8550         120 VTCKEANLDVIPITLN----PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKL  195 (332)
Q Consensus       120 ~~c~~~~l~~lp~~~~----~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l  195 (332)
                      +...+..++.+|..-.    ......|++.|++.++|..+..+..|+.+.+++|.+..++ .++..+..|++++++.|++
T Consensus        55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip-~~i~~L~~lt~l~ls~Nql  133 (722)
T KOG0532|consen   55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIP-EAICNLEALTFLDLSSNQL  133 (722)
T ss_pred             cccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecc-hhhhhhhHHHHhhhccchh
Confidence            4455566666664322    3456678888999999998888888999999999888887 6788889999999999999


Q ss_pred             cccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccc
Q psy8550         196 SSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSF  275 (332)
Q Consensus       196 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  275 (332)
                      +.+++ .+..+ -|+.|-+++|+++.+|+++ +.+..|..||.+.|.+..+++. ++.+.+|+.|++..|++..+|+ .+
T Consensus       134 S~lp~-~lC~l-pLkvli~sNNkl~~lp~~i-g~~~tl~~ld~s~nei~slpsq-l~~l~slr~l~vrRn~l~~lp~-El  208 (722)
T KOG0532|consen  134 SHLPD-GLCDL-PLKVLIVSNNKLTSLPEEI-GLLPTLAHLDVSKNEIQSLPSQ-LGYLTSLRDLNVRRNHLEDLPE-EL  208 (722)
T ss_pred             hcCCh-hhhcC-cceeEEEecCccccCCccc-ccchhHHHhhhhhhhhhhchHH-hhhHHHHHHHHHhhhhhhhCCH-HH
Confidence            88854 34343 5888999999999998885 6788899999999999888554 7788899999999999998887 45


Q ss_pred             cCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccc
Q psy8550         276 IYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSM  323 (332)
Q Consensus       276 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~  323 (332)
                      +. -.|.+||++.|++..+|- .|.+|+.|++|-|.+|.+++-|....
T Consensus       209 ~~-LpLi~lDfScNkis~iPv-~fr~m~~Lq~l~LenNPLqSPPAqIC  254 (722)
T KOG0532|consen  209 CS-LPLIRLDFSCNKISYLPV-DFRKMRHLQVLQLENNPLQSPPAQIC  254 (722)
T ss_pred             hC-CceeeeecccCceeecch-hhhhhhhheeeeeccCCCCCChHHHH
Confidence            53 468899999999988876 78999999999999999988766553

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.42  E-value=1.4e-13  Score=128.90  Aligned_cols=183  Identities=31%  Similarity=0.464  Sum_probs=154.2

Q ss_pred             CCccEEEeecCCCccchhhhcCCC-CCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEc
Q psy8550         136 PSIQRLVLKYNRIKTVDSAIQFYS-SLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNL  214 (332)
Q Consensus       136 ~~L~~L~l~~~~l~~l~~~~~~l~-~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  214 (332)
                      +.++.|++.++.++.+++....+. +|+.|++++|++..++ ..+..+++|+.|+++.|++..+++ ..+..++|+.|++
T Consensus       116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N~l~~l~~-~~~~~~~L~~L~l  193 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFNDLSDLPK-LLSNLSNLNNLDL  193 (394)
T ss_pred             cceeEEecCCcccccCccccccchhhcccccccccchhhhh-hhhhccccccccccCCchhhhhhh-hhhhhhhhhheec
Confidence            578999999999999999888885 9999999999999886 467889999999999999999854 3447789999999


Q ss_pred             cCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCcc
Q psy8550         215 RGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTL  294 (332)
Q Consensus       215 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  294 (332)
                      ++|.+..+|+.. ..+..|+++.+++|.+... +..+..+.++..+.+.+|++..++. .++.+++++.|++++|.++.+
T Consensus       194 s~N~i~~l~~~~-~~~~~L~~l~~~~N~~~~~-~~~~~~~~~l~~l~l~~n~~~~~~~-~~~~l~~l~~L~~s~n~i~~i  270 (394)
T COG4886         194 SGNKISDLPPEI-ELLSALEELDLSNNSIIEL-LSSLSNLKNLSGLELSNNKLEDLPE-SIGNLSNLETLDLSNNQISSI  270 (394)
T ss_pred             cCCccccCchhh-hhhhhhhhhhhcCCcceec-chhhhhcccccccccCCceeeeccc-hhccccccceecccccccccc
Confidence            999999999863 4556699999999965444 3347788889899999999887644 677888899999999999998


Q ss_pred             CchhcCCCCCCCEEEccCCCCCCcccccccC
Q psy8550         295 ADGAFNGLGRLSALDLRGAGLTNMMGHSMAL  325 (332)
Q Consensus       295 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~  325 (332)
                      ..  ++.+.+++.||+++|.+..+++.....
T Consensus       271 ~~--~~~~~~l~~L~~s~n~~~~~~~~~~~~  299 (394)
T COG4886         271 SS--LGSLTNLRELDLSGNSLSNALPLIALL  299 (394)
T ss_pred             cc--ccccCccCEEeccCccccccchhhhcc
Confidence            87  888999999999999998887765543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.42  E-value=2.9e-14  Score=129.29  Aligned_cols=201  Identities=26%  Similarity=0.274  Sum_probs=143.8

Q ss_pred             CceEEecCCCcc-----ccCCCCC--CCccEEEeecCCCcc-------chhhhcCCCCCcEEEeecCcCcccCCCCCCCC
Q psy8550         117 TLVVTCKEANLD-----VIPITLN--PSIQRLVLKYNRIKT-------VDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQ  182 (332)
Q Consensus       117 ~~~~~c~~~~l~-----~lp~~~~--~~L~~L~l~~~~l~~-------l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l  182 (332)
                      ...+.+.++.+.     .++..+.  +++++++++++.+..       ++..+..+++|++|++++|.+....+..+..+
T Consensus        25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l  104 (319)
T cd00116          25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESL  104 (319)
T ss_pred             ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHH
Confidence            446777776663     3333332  568999999887662       34467788999999999999875444444444


Q ss_pred             C---CCcEEEcCCCccccc----CccccCCC-CCCCEEEccCCCCCCCC----ccccCCCCCCcEeeccCCCCcccC---
Q psy8550         183 E---KLVELQLNHNKLSSV----NNKTFIGL-KSLKVLNLRGNFLEDLP----DRLFAPLSHLEELDLGQNRISRID---  247 (332)
Q Consensus       183 ~---~L~~L~l~~n~l~~~----~~~~~~~l-~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~---  247 (332)
                      .   +|++|++++|.+...    ....+..+ ++|+.|++++|.++...    ...+..+.+|+.|++++|.+++..   
T Consensus       105 ~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  184 (319)
T cd00116         105 LRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRA  184 (319)
T ss_pred             hccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHH
Confidence            4   499999999988732    12345566 89999999999988322    223466788999999999988421   


Q ss_pred             -hhhcCCCCCCcEEeCCCCCCCCcCc----ccccCCCCccEEEcCCCcCCccCchhcC-----CCCCCCEEEccCCCCCC
Q psy8550         248 -QACFEGLTALRILYLDDNQLRSVPT----PSFIYLGMLAELRVGLNVFTTLADGAFN-----GLGRLSALDLRGAGLTN  317 (332)
Q Consensus       248 -~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~Ls~n~l~~  317 (332)
                       +..+..+++|+.|++++|.+.+...    ..+..+++|++|++++|.+++.....+.     ..+.|+.|++++|.++.
T Consensus       185 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~  264 (319)
T cd00116         185 LAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITD  264 (319)
T ss_pred             HHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCc
Confidence             2335566799999999999875432    2455678999999999999863322222     24799999999999873

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.38  E-value=3.7e-13  Score=110.18  Aligned_cols=124  Identities=31%  Similarity=0.389  Sum_probs=34.6

Q ss_pred             CCcEEEcCCCcccccCccccC-CCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeC
Q psy8550         184 KLVELQLNHNKLSSVNNKTFI-GLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYL  262 (332)
Q Consensus       184 ~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  262 (332)
                      +++.|++++|.|+.+.  .++ .+.+|+.|++++|.++.+..  +..+++|++|++++|.++.+.+.....+++|++|++
T Consensus        20 ~~~~L~L~~n~I~~Ie--~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L   95 (175)
T PF14580_consen   20 KLRELNLRGNQISTIE--NLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL   95 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred             cccccccccccccccc--chhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence            4444445444444442  122 24455555555555554443  344555555555555555553321223455555555


Q ss_pred             CCCCCCCcCc-ccccCCCCccEEEcCCCcCCccCc---hhcCCCCCCCEEEcc
Q psy8550         263 DDNQLRSVPT-PSFIYLGMLAELRVGLNVFTTLAD---GAFNGLGRLSALDLR  311 (332)
Q Consensus       263 ~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~Ls  311 (332)
                      ++|++..+.. ..++.+++|+.|++.+|+++....   ..+..+++|+.||-.
T Consensus        96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             cCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            5555554332 234455666666666666654322   234455666666543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.33  E-value=7.1e-13  Score=108.52  Aligned_cols=126  Identities=28%  Similarity=0.378  Sum_probs=42.2

Q ss_pred             CCCCCcEEEeecCcCcccCCCCCC-CCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcE
Q psy8550         157 FYSSLQHVDLSHNQLVNIPIRGFE-PQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEE  235 (332)
Q Consensus       157 ~l~~L~~L~l~~~~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  235 (332)
                      +..++++|++.+|.|+.|.  .++ .+.+|+.|++++|.++.+.  .+..+++|++|++++|.++.+.+.....+++|+.
T Consensus        17 n~~~~~~L~L~~n~I~~Ie--~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTIE--NLGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE   92 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred             ccccccccccccccccccc--chhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence            3445666777777766664  233 4566777777777776663  3556677777777777777665443234667777


Q ss_pred             eeccCCCCcccCh-hhcCCCCCCcEEeCCCCCCCCcCc---ccccCCCCccEEEc
Q psy8550         236 LDLGQNRISRIDQ-ACFEGLTALRILYLDDNQLRSVPT---PSFIYLGMLAELRV  286 (332)
Q Consensus       236 L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L  286 (332)
                      |++++|++..+.. ..+..+++|+.|++.+|.++..+.   ..+..+++|+.||-
T Consensus        93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            7777777665433 345566777777777777765443   23455677777663

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.28  E-value=3.4e-12  Score=119.47  Aligned_cols=184  Identities=31%  Similarity=0.396  Sum_probs=150.7

Q ss_pred             EEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCC-CCcEEEcCCCcccccCccccCCCCCCCEEEccCCC
Q psy8550         140 RLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQE-KLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNF  218 (332)
Q Consensus       140 ~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~  218 (332)
                      .++...+.+..-...+..++.++.|++.++.++.+++ ....+. +|+.|++++|.+..+ |..++.+++|+.|++++|.
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~-~~~~~~~nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~N~  174 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPP-LIGLLKSNLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFND  174 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccccCcc-ccccchhhcccccccccchhhh-hhhhhccccccccccCCch
Confidence            5777777775444556677899999999999999984 445553 999999999999988 3557899999999999999


Q ss_pred             CCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchh
Q psy8550         219 LEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGA  298 (332)
Q Consensus       219 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  298 (332)
                      +..+++.. +.+++|+.|++++|++..+++. ......|+.+.+++|.+...+. .+..+.++..+.+.+|++...+ ..
T Consensus       175 l~~l~~~~-~~~~~L~~L~ls~N~i~~l~~~-~~~~~~L~~l~~~~N~~~~~~~-~~~~~~~l~~l~l~~n~~~~~~-~~  250 (394)
T COG4886         175 LSDLPKLL-SNLSNLNNLDLSGNKISDLPPE-IELLSALEELDLSNNSIIELLS-SLSNLKNLSGLELSNNKLEDLP-ES  250 (394)
T ss_pred             hhhhhhhh-hhhhhhhheeccCCccccCchh-hhhhhhhhhhhhcCCcceecch-hhhhcccccccccCCceeeecc-ch
Confidence            99999864 4789999999999999999664 3445669999999997655554 5778889999999999988764 36


Q ss_pred             cCCCCCCCEEEccCCCCCCcccccccCCCCccc
Q psy8550         299 FNGLGRLSALDLRGAGLTNMMGHSMALGDYLHW  331 (332)
Q Consensus       299 ~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~  331 (332)
                      ++.++++++|++++|.++.++.  ++....|+.
T Consensus       251 ~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~  281 (394)
T COG4886         251 IGNLSNLETLDLSNNQISSISS--LGSLTNLRE  281 (394)
T ss_pred             hccccccceecccccccccccc--ccccCccCE
Confidence            8889999999999999999987  666555553

>KOG1259|consensus

Probab=99.19  E-value=1.7e-12  Score=111.73  Aligned_cols=136  Identities=28%  Similarity=0.383  Sum_probs=95.3

Q ss_pred             hcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCc
Q psy8550         155 IQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLE  234 (332)
Q Consensus       155 ~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  234 (332)
                      +.....|+++|+++|.|+.+. .+..-.+.++.|++++|.+..+..  +..+.+|+.|||++|.++.+.... .++.+.+
T Consensus       280 ~dTWq~LtelDLS~N~I~~iD-ESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh-~KLGNIK  355 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLITQID-ESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWH-LKLGNIK  355 (490)
T ss_pred             cchHhhhhhccccccchhhhh-hhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhhH-hhhcCEe
Confidence            334456777777777777776 556667777777777777777643  667777778888877777665433 4567777


Q ss_pred             EeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCc-ccccCCCCccEEEcCCCcCCccCc
Q psy8550         235 ELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPT-PSFIYLGMLAELRVGLNVFTTLAD  296 (332)
Q Consensus       235 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~  296 (332)
                      +|.+++|.+..+..  +..+.+|..|++++|+|..... ..+|+++-|+++.|.+|++.+++.
T Consensus       356 tL~La~N~iE~LSG--L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  356 TLKLAQNKIETLSG--LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             eeehhhhhHhhhhh--hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence            77888777776533  5667777777888877765432 356777778888888887777654

>KOG1259|consensus

Probab=99.18  E-value=3.3e-12  Score=110.02  Aligned_cols=131  Identities=24%  Similarity=0.315  Sum_probs=74.7

Q ss_pred             CCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCC
Q psy8550         184 KLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLD  263 (332)
Q Consensus       184 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  263 (332)
                      .|+.+|+++|.|+.+ .+++.-++.++.|+++.|++..+..  +..+.+|+.||+++|.++.+.. +-..+-+.++|.|+
T Consensus       285 ~LtelDLS~N~I~~i-DESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~G-wh~KLGNIKtL~La  360 (490)
T KOG1259|consen  285 ELTELDLSGNLITQI-DESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVG-WHLKLGNIKTLKLA  360 (490)
T ss_pred             hhhhccccccchhhh-hhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhh-hHhhhcCEeeeehh
Confidence            455566666666555 3445555566666666666655544  4555666666666665555422 12234455566666


Q ss_pred             CCCCCCcCcccccCCCCccEEEcCCCcCCccCc-hhcCCCCCCCEEEccCCCCCCccc
Q psy8550         264 DNQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD-GAFNGLGRLSALDLRGAGLTNMMG  320 (332)
Q Consensus       264 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~l~~  320 (332)
                      +|.+.++..  ++.+.+|..||+++|++..... ..+++++-|+.+.|.+|.+..++.
T Consensus       361 ~N~iE~LSG--L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  361 QNKIETLSG--LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             hhhHhhhhh--hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence            666555442  5556666666666666665433 456666666666666666665543

>KOG0532|consensus

Probab=99.18  E-value=8.4e-13  Score=122.24  Aligned_cols=173  Identities=25%  Similarity=0.344  Sum_probs=148.7

Q ss_pred             CceEEecCCCccccCCCCC--CCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCc
Q psy8550         117 TLVVTCKEANLDVIPITLN--PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK  194 (332)
Q Consensus       117 ~~~~~c~~~~l~~lp~~~~--~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~  194 (332)
                      ...++...+.+.++|....  ..|..+.+..|.+..+|..+.++..|+.|+++.|+++.++. .++.+ -|+.|-+++|+
T Consensus        77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~-~lC~l-pLkvli~sNNk  154 (722)
T KOG0532|consen   77 TVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPD-GLCDL-PLKVLIVSNNK  154 (722)
T ss_pred             hhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCCh-hhhcC-cceeEEEecCc
Confidence            3456777888888887664  67888889999999999999999999999999999999884 34444 58999999999


Q ss_pred             ccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCccc
Q psy8550         195 LSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPS  274 (332)
Q Consensus       195 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  274 (332)
                      ++.+ |+.++.+..|..||.+.|.+..+|+.. +.+.+|+.|.+..|.+..++++ +.. -.|..||++.|+++.+|. .
T Consensus       155 l~~l-p~~ig~~~tl~~ld~s~nei~slpsql-~~l~slr~l~vrRn~l~~lp~E-l~~-LpLi~lDfScNkis~iPv-~  229 (722)
T KOG0532|consen  155 LTSL-PEEIGLLPTLAHLDVSKNEIQSLPSQL-GYLTSLRDLNVRRNHLEDLPEE-LCS-LPLIRLDFSCNKISYLPV-D  229 (722)
T ss_pred             cccC-CcccccchhHHHhhhhhhhhhhchHHh-hhHHHHHHHHHhhhhhhhCCHH-HhC-CceeeeecccCceeecch-h
Confidence            9988 667788899999999999999999875 8899999999999999999666 444 458899999999999987 8


Q ss_pred             ccCCCCccEEEcCCCcCCccCc
Q psy8550         275 FIYLGMLAELRVGLNVFTTLAD  296 (332)
Q Consensus       275 ~~~l~~L~~L~L~~n~l~~~~~  296 (332)
                      |..|+.|++|-|.+|.+...+.
T Consensus       230 fr~m~~Lq~l~LenNPLqSPPA  251 (722)
T KOG0532|consen  230 FRKMRHLQVLQLENNPLQSPPA  251 (722)
T ss_pred             hhhhhhheeeeeccCCCCCChH
Confidence            9999999999999999987665

>KOG3207|consensus

Probab=99.09  E-value=1.4e-11  Score=110.92  Aligned_cols=203  Identities=23%  Similarity=0.222  Sum_probs=136.4

Q ss_pred             CCceEEecCCCccccCC----CCCCCccEEEeecCCCcc---chhhhcCCCCCcEEEeecCcCcccCCC-CCCCCCCCcE
Q psy8550         116 ETLVVTCKEANLDVIPI----TLNPSIQRLVLKYNRIKT---VDSAIQFYSSLQHVDLSHNQLVNIPIR-GFEPQEKLVE  187 (332)
Q Consensus       116 ~~~~~~c~~~~l~~lp~----~~~~~L~~L~l~~~~l~~---l~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~l~~L~~  187 (332)
                      .++.+..++..+...+.    ...++++.|||+.|-+..   +-.....+++|+.|+++.|++...... .-..+++|+.
T Consensus       122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~  201 (505)
T KOG3207|consen  122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQ  201 (505)
T ss_pred             hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhhe
Confidence            44556666666655553    123788999999887663   334667889999999999887654322 2235678889


Q ss_pred             EEcCCCcccccCc-cccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccCh-hhcCCCCCCcEEeCCCC
Q psy8550         188 LQLNHNKLSSVNN-KTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQ-ACFEGLTALRILYLDDN  265 (332)
Q Consensus       188 L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n  265 (332)
                      |.++.|.++.-.- .....+++|+.|+|..|....+.......+..|+.|||++|.+...+. ...+.++.|+.|+++.|
T Consensus       202 L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t  281 (505)
T KOG3207|consen  202 LVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST  281 (505)
T ss_pred             EEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcccc
Confidence            9998888774321 223456888899998885222222223446778899999888776642 34677888888888888


Q ss_pred             CCCCcCcccc------cCCCCccEEEcCCCcCCccCc-hhcCCCCCCCEEEccCCCCCCc
Q psy8550         266 QLRSVPTPSF------IYLGMLAELRVGLNVFTTLAD-GAFNGLGRLSALDLRGAGLTNM  318 (332)
Q Consensus       266 ~l~~~~~~~~------~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~l  318 (332)
                      .+.++....-      ...++|+.|+++.|++..+.. ..+..+.+|..|.+..|.+..-
T Consensus       282 gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  282 GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE  341 (505)
T ss_pred             CcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence            8876543222      356788999999998877654 3445566777777777777643

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.08  E-value=8.8e-11  Score=79.34  Aligned_cols=61  Identities=34%  Similarity=0.464  Sum_probs=43.2

Q ss_pred             CCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCC
Q psy8550         255 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGL  315 (332)
Q Consensus       255 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  315 (332)
                      ++|++|++++|+++.+++..|..+++|+.|++++|.++.+++.+|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3566677777777777766777777777777777777777777777777777777777754

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.07  E-value=1.2e-10  Score=78.64  Aligned_cols=59  Identities=36%  Similarity=0.559  Sum_probs=37.0

Q ss_pred             CCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCC
Q psy8550         160 SLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNF  218 (332)
Q Consensus       160 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~  218 (332)
                      +|++|++++|+++.+++..|.++++|++|++++|.++.+++.+|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45666666666666666666666666666666666666666666666666666666654

...

>KOG1909|consensus

Probab=99.05  E-value=2.7e-11  Score=106.33  Aligned_cols=238  Identities=21%  Similarity=0.193  Sum_probs=167.8

Q ss_pred             ccchhhhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCcccCCCceEEecC----CCccccCCC
Q psy8550          58 IIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKE----ANLDVIPIT  133 (332)
Q Consensus        58 ~iP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~c~c~~~~~~~~c~~----~~l~~lp~~  133 (332)
                      .+-+..-.++.+..+++++|.|..-..-.+...+.                    -...++.+.+++    ....++|..
T Consensus        21 ~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~--------------------~~~~L~~v~~sd~ftGR~~~Ei~e~   80 (382)
T KOG1909|consen   21 DVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLA--------------------SKKELREVNLSDMFTGRLKDEIPEA   80 (382)
T ss_pred             hHHHHhcccCceEEEeccCCchhHHHHHHHHHHHh--------------------hcccceeeehHhhhcCCcHHHHHHH
Confidence            33444666778888889998887664322211111                    112344555543    233344532


Q ss_pred             C---------CCCccEEEeecCCCc-----cchhhhcCCCCCcEEEeecCcCcccCC-------------CCCCCCCCCc
Q psy8550         134 L---------NPSIQRLVLKYNRIK-----TVDSAIQFYSSLQHVDLSHNQLVNIPI-------------RGFEPQEKLV  186 (332)
Q Consensus       134 ~---------~~~L~~L~l~~~~l~-----~l~~~~~~l~~L~~L~l~~~~l~~~~~-------------~~~~~l~~L~  186 (332)
                      +         .+.+++|+|++|.+.     .+..-+..+..|++|.+.+|.+.....             ...+.-+.|+
T Consensus        81 L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lr  160 (382)
T KOG1909|consen   81 LKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLR  160 (382)
T ss_pred             HHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceE
Confidence            2         158999999999887     233367889999999999999874332             2234568899


Q ss_pred             EEEcCCCcccccCc----cccCCCCCCCEEEccCCCCCCCC----ccccCCCCCCcEeeccCCCCcccCh----hhcCCC
Q psy8550         187 ELQLNHNKLSSVNN----KTFIGLKSLKVLNLRGNFLEDLP----DRLFAPLSHLEELDLGQNRISRIDQ----ACFEGL  254 (332)
Q Consensus       187 ~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l  254 (332)
                      ++...+|++..-..    ..|...+.|+.+.++.|.+..-.    ...|..+++|+.|||.+|.++.-..    ..+..+
T Consensus       161 v~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~  240 (382)
T KOG1909|consen  161 VFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSW  240 (382)
T ss_pred             EEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhccc
Confidence            99999998876532    45677789999999999876322    2346788999999999998885433    556778


Q ss_pred             CCCcEEeCCCCCCCCcCcccc-----cCCCCccEEEcCCCcCCcc----CchhcCCCCCCCEEEccCCCC
Q psy8550         255 TALRILYLDDNQLRSVPTPSF-----IYLGMLAELRVGLNVFTTL----ADGAFNGLGRLSALDLRGAGL  315 (332)
Q Consensus       255 ~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l  315 (332)
                      +.|+.+++++|.+..-....+     ...++|+.+.+.+|.++..    ...++...+.|..|+|++|++
T Consensus       241 ~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  241 PHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             chheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            899999999999986544333     2468999999999999842    334556688999999999999

>KOG0531|consensus

Probab=99.01  E-value=3.8e-11  Score=112.96  Aligned_cols=175  Identities=33%  Similarity=0.451  Sum_probs=128.1

Q ss_pred             CCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEcc
Q psy8550         136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLR  215 (332)
Q Consensus       136 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  215 (332)
                      .++..|++.+|.|..+...+..+++|++|++++|.|+.+.  .+..++.|+.|++.+|.++.+.  .+..+.+|+.++++
T Consensus        95 ~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~~--~~~~l~~L~~l~l~  170 (414)
T KOG0531|consen   95 KSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDIS--GLESLKSLKLLDLS  170 (414)
T ss_pred             cceeeeeccccchhhcccchhhhhcchheecccccccccc--chhhccchhhheeccCcchhcc--CCccchhhhcccCC
Confidence            6788888888888877665777888888888888888775  4566777888888888887764  35567788888888


Q ss_pred             CCCCCCCCc-cccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCC--ccEEEcCCCcCC
Q psy8550         216 GNFLEDLPD-RLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGM--LAELRVGLNVFT  292 (332)
Q Consensus       216 ~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~L~~n~l~  292 (332)
                      +|.+..+.. . ...+.+++.+++.+|.+..+..  +..+..+..+++..|.++.+.+  +..+..  |+.+++++|++.
T Consensus       171 ~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~  245 (414)
T KOG0531|consen  171 YNRIVDIENDE-LSELISLEELDLGGNSIREIEG--LDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS  245 (414)
T ss_pred             cchhhhhhhhh-hhhccchHHHhccCCchhcccc--hHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccc
Confidence            888887766 2 2556778888888887776644  2333455555777777776654  222333  889999999998


Q ss_pred             ccCchhcCCCCCCCEEEccCCCCCCccc
Q psy8550         293 TLADGAFNGLGRLSALDLRGAGLTNMMG  320 (332)
Q Consensus       293 ~~~~~~~~~l~~L~~L~Ls~n~l~~l~~  320 (332)
                      ..+ ..+..+..+..+|+++|++..+..
T Consensus       246 ~~~-~~~~~~~~l~~l~~~~n~~~~~~~  272 (414)
T KOG0531|consen  246 RSP-EGLENLKNLPVLDLSSNRISNLEG  272 (414)
T ss_pred             ccc-ccccccccccccchhhcccccccc
Confidence            764 356678889999999998876544

>KOG3207|consensus

Probab=99.01  E-value=9.7e-11  Score=105.62  Aligned_cols=183  Identities=22%  Similarity=0.217  Sum_probs=106.5

Q ss_pred             CCccEEEeecCCCccchh--hhcCCCCCcEEEeecCcCcccCC--CCCCCCCCCcEEEcCCCcccccCcc-ccCCCCCCC
Q psy8550         136 PSIQRLVLKYNRIKTVDS--AIQFYSSLQHVDLSHNQLVNIPI--RGFEPQEKLVELQLNHNKLSSVNNK-TFIGLKSLK  210 (332)
Q Consensus       136 ~~L~~L~l~~~~l~~l~~--~~~~l~~L~~L~l~~~~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~  210 (332)
                      .+|+.+.|+++.+...+.  ....+++++.||+++|-+....+  .....+++|+.|+++.|++...... .-..+++|+
T Consensus       121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK  200 (505)
T KOG3207|consen  121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK  200 (505)
T ss_pred             HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence            456677777776665553  55667777777777776554321  2234567777777777766543221 122356677


Q ss_pred             EEEccCCCCCCCC-ccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCc-ccccCCCCccEEEcCC
Q psy8550         211 VLNLRGNFLEDLP-DRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPT-PSFIYLGMLAELRVGL  288 (332)
Q Consensus       211 ~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~  288 (332)
                      .|.++.|+++.-. ......+++|+.|++.+|....+.......+..|+.|+|++|.+.+.+. ...+.++.|+.|+++.
T Consensus       201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~  280 (505)
T KOG3207|consen  201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSS  280 (505)
T ss_pred             eEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccc
Confidence            7777777766211 1122345677777777774333323333445567777777777766552 2445667777777777


Q ss_pred             CcCCccCc-hh-----cCCCCCCCEEEccCCCCCCc
Q psy8550         289 NVFTTLAD-GA-----FNGLGRLSALDLRGAGLTNM  318 (332)
Q Consensus       289 n~l~~~~~-~~-----~~~l~~L~~L~Ls~n~l~~l  318 (332)
                      |.+..+.. +.     ...+++|++|+++.|++...
T Consensus       281 tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w  316 (505)
T KOG3207|consen  281 TGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDW  316 (505)
T ss_pred             cCcchhcCCCccchhhhcccccceeeecccCccccc
Confidence            76665422 11     13456677777777776543

>KOG0531|consensus

Probab=98.98  E-value=7.5e-11  Score=111.01  Aligned_cols=190  Identities=27%  Similarity=0.397  Sum_probs=130.0

Q ss_pred             CCceEEecCCCccccCC--CCCCCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCC
Q psy8550         116 ETLVVTCKEANLDVIPI--TLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN  193 (332)
Q Consensus       116 ~~~~~~c~~~~l~~lp~--~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n  193 (332)
                      ....+...++.++.+..  +..+++++|++++|.|+.+.. +..++.|+.|++++|.|..+.  .+..+..|+.+++++|
T Consensus        96 ~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~i~~~~--~~~~l~~L~~l~l~~n  172 (414)
T KOG0531|consen   96 SLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNLISDIS--GLESLKSLKLLDLSYN  172 (414)
T ss_pred             ceeeeeccccchhhcccchhhhhcchheeccccccccccc-hhhccchhhheeccCcchhcc--CCccchhhhcccCCcc
Confidence            34456777777777665  334788888888888887743 566666888888888888775  3555788888888888


Q ss_pred             cccccCc-cccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCC--CcEEeCCCCCCCCc
Q psy8550         194 KLSSVNN-KTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTA--LRILYLDDNQLRSV  270 (332)
Q Consensus       194 ~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~L~~n~l~~~  270 (332)
                      .+..+.+ . ...+.+++.+++.+|.+..+..  +..+..+..+++..|.++.+.+  +..+..  |+.+++++|.+...
T Consensus       173 ~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~  247 (414)
T KOG0531|consen  173 RIVDIENDE-LSELISLEELDLGGNSIREIEG--LDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISRS  247 (414)
T ss_pred             hhhhhhhhh-hhhccchHHHhccCCchhcccc--hHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccccc
Confidence            8887765 2 3567788888888888776654  2334555566777777776644  223333  77888888888766


Q ss_pred             CcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCC
Q psy8550         271 PTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT  316 (332)
Q Consensus       271 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  316 (332)
                      +. .+..+..+..+++.+|++.....  +.....+..+..+.|.+.
T Consensus       248 ~~-~~~~~~~l~~l~~~~n~~~~~~~--~~~~~~~~~~~~~~~~~~  290 (414)
T KOG0531|consen  248 PE-GLENLKNLPVLDLSSNRISNLEG--LERLPKLSELWLNDNKLA  290 (414)
T ss_pred             cc-cccccccccccchhhcccccccc--ccccchHHHhccCcchhc
Confidence            42 45566777888888887776543  345556666777777655

>PLN03150 hypothetical protein; Provisional

Probab=98.96  E-value=2.5e-09  Score=105.46  Aligned_cols=107  Identities=20%  Similarity=0.197  Sum_probs=83.4

Q ss_pred             CCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCC
Q psy8550         209 LKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGL  288 (332)
Q Consensus       209 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  288 (332)
                      ++.|+|++|.+....+..++.+++|+.|+|++|.+.+..|..++.+++|+.|++++|++++..+..++.+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            66788888888765555567888888888888888866676788888888888888888877776788888888888888


Q ss_pred             CcCCccCchhcCCC-CCCCEEEccCCCC
Q psy8550         289 NVFTTLADGAFNGL-GRLSALDLRGAGL  315 (332)
Q Consensus       289 n~l~~~~~~~~~~l-~~L~~L~Ls~n~l  315 (332)
                      |++++..|..++.. .++..+++.+|..
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCcc
Confidence            88888777766653 4567788888854

>PLN03150 hypothetical protein; Provisional

Probab=98.89  E-value=4.8e-09  Score=103.43  Aligned_cols=109  Identities=24%  Similarity=0.207  Sum_probs=93.7

Q ss_pred             CCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCC
Q psy8550         184 KLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLD  263 (332)
Q Consensus       184 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  263 (332)
                      .++.|+|++|.+.+..|..+..+++|+.|+|++|.+.+..+..++.+++|+.|++++|.+++..|..++++++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            37889999999999889999999999999999999986555557999999999999999998878889999999999999


Q ss_pred             CCCCCCcCcccccCC-CCccEEEcCCCcCC
Q psy8550         264 DNQLRSVPTPSFIYL-GMLAELRVGLNVFT  292 (332)
Q Consensus       264 ~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~  292 (332)
                      +|.+++..|..++.. .++..+++.+|...
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccc
Confidence            999997766666553 46778999988644

>KOG1909|consensus

Probab=98.72  E-value=4e-09  Score=92.84  Aligned_cols=110  Identities=27%  Similarity=0.283  Sum_probs=50.6

Q ss_pred             CCCCEEEccCCCCCCCCc----cccCCCCCCcEeeccCCCCccc----ChhhcCCCCCCcEEeCCCCCCCCcCc----cc
Q psy8550         207 KSLKVLNLRGNFLEDLPD----RLFAPLSHLEELDLGQNRISRI----DQACFEGLTALRILYLDDNQLRSVPT----PS  274 (332)
Q Consensus       207 ~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~----~~  274 (332)
                      +.|+.+...+|++..-+.    ..|...+.|+.+.+..|.|..-    ....+.++++|+.|+|.+|-++.-..    ..
T Consensus       157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka  236 (382)
T KOG1909|consen  157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA  236 (382)
T ss_pred             cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence            345555555555443332    1233334555555555544321    12334455555555555555543221    22


Q ss_pred             ccCCCCccEEEcCCCcCCccCchhc-----CCCCCCCEEEccCCCCC
Q psy8550         275 FIYLGMLAELRVGLNVFTTLADGAF-----NGLGRLSALDLRGAGLT  316 (332)
Q Consensus       275 ~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~l~  316 (332)
                      +..+++|+.+++++|.+..--..+|     ...++|+++.+.+|.++
T Consensus       237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence            3344555555555555553322111     22455556666655554

>KOG1859|consensus

Probab=98.70  E-value=5.6e-11  Score=113.15  Aligned_cols=126  Identities=25%  Similarity=0.338  Sum_probs=63.3

Q ss_pred             CcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCC
Q psy8550         185 LVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDD  264 (332)
Q Consensus       185 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  264 (332)
                      |.+.+.++|.+... ..++.-++.++.|+|++|+++.+.  .+..+++|++||++.|.+..++--....+. |..|.+++
T Consensus       166 L~~a~fsyN~L~~m-D~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn  241 (1096)
T KOG1859|consen  166 LATASFSYNRLVLM-DESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN  241 (1096)
T ss_pred             HhhhhcchhhHHhH-HHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence            44445555555444 334444555555555555555554  245555555555555555555332222222 55555555


Q ss_pred             CCCCCcCcccccCCCCccEEEcCCCcCCccCc-hhcCCCCCCCEEEccCCCCC
Q psy8550         265 NQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD-GAFNGLGRLSALDLRGAGLT  316 (332)
Q Consensus       265 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~  316 (332)
                      |.++.+-.  +.++.+|+.||+++|-+.+... ..++.+..|+.|+|.||.+-
T Consensus       242 N~l~tL~g--ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  242 NALTTLRG--IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             cHHHhhhh--HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            55555442  4455555555555555543322 22344455555555555553

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.62  E-value=1.1e-07  Score=74.14  Aligned_cols=124  Identities=15%  Similarity=0.331  Sum_probs=49.2

Q ss_pred             cccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCC
Q psy8550         201 KTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGM  280 (332)
Q Consensus       201 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  280 (332)
                      .+|.++.+|+.+.+.. .+..+....|..+.+++.+.+.++ +..+....|.++++++.+.+.+ .+..++...|..+++
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence            3444444444444442 344444444555545555555443 4444444555554555555543 444444445555566


Q ss_pred             ccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCcc
Q psy8550         281 LAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLH  330 (332)
Q Consensus       281 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~  330 (332)
                      ++.+.+..+ +..+...+|.++ .++.+.+.. .++.++...|..++.|+
T Consensus        83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred             ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence            666666544 555555566665 666666664 56666666676666654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.55  E-value=2.9e-07  Score=71.85  Aligned_cols=123  Identities=21%  Similarity=0.373  Sum_probs=44.2

Q ss_pred             CCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCC
Q psy8550         177 RGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTA  256 (332)
Q Consensus       177 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  256 (332)
                      .+|.+.++|+.+.+.. .+..+...+|.++.+|+.+.+..+ +..++...|..+.+++.+.+.+ .+..+....|..+++
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence            4444444455554442 344444444544444555555442 4444444444444455555543 344444444444555


Q ss_pred             CcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCC
Q psy8550         257 LRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRL  305 (332)
Q Consensus       257 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  305 (332)
                      ++.+.+..+ +..+....|... +++.+.+.. .+..+...+|.++++|
T Consensus        83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            555555443 444444445444 555555443 4444444455544443

>KOG4658|consensus

Probab=98.51  E-value=1.5e-07  Score=95.49  Aligned_cols=184  Identities=23%  Similarity=0.250  Sum_probs=108.9

Q ss_pred             CCccEEEeecCCCccchhhhcCCCCCcEEEeecCc--CcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEE
Q psy8550         136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQ--LVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLN  213 (332)
Q Consensus       136 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  213 (332)
                      ..++.+.+.+|.+..++..... ++|++|-+..|.  +..++...|..++.|++||+++|.--+-.|..++++-+|++|+
T Consensus       523 ~~~rr~s~~~~~~~~~~~~~~~-~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~  601 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHIAGSSEN-PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD  601 (889)
T ss_pred             hheeEEEEeccchhhccCCCCC-CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence            4566666666666665543332 367777777775  5666655677777777777776644333466777777777777


Q ss_pred             ccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCC--CcCcccccCCCCccEEEcC----
Q psy8550         214 LRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLR--SVPTPSFIYLGMLAELRVG----  287 (332)
Q Consensus       214 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~----  287 (332)
                      ++++.+..+|.+ ++++..|.+|++..+.-....+.....+.+|++|.+-.....  ...-..+..+.+|+.+...    
T Consensus       602 L~~t~I~~LP~~-l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~  680 (889)
T KOG4658|consen  602 LSDTGISHLPSG-LGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV  680 (889)
T ss_pred             ccCCCccccchH-HHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh
Confidence            777777777766 377777777777766544444555555677777766543311  1111112223333332222    


Q ss_pred             ----------------------CCcCCccCchhcCCCCCCCEEEccCCCCCCccccc
Q psy8550         288 ----------------------LNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHS  322 (332)
Q Consensus       288 ----------------------~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~  322 (332)
                                            ++.....+ ..+..+.+|+.|.+.++.+..+....
T Consensus       681 ~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~-~~~~~l~~L~~L~i~~~~~~e~~~~~  736 (889)
T KOG4658|consen  681 LLLEDLLGMTRLRSLLQSLSIEGCSKRTLI-SSLGSLGNLEELSILDCGISEIVIEW  736 (889)
T ss_pred             HhHhhhhhhHHHHHHhHhhhhcccccceee-cccccccCcceEEEEcCCCchhhccc
Confidence                                  22222222 25677888888988888887554433

>KOG1859|consensus

Probab=98.49  E-value=7.4e-10  Score=105.70  Aligned_cols=127  Identities=31%  Similarity=0.473  Sum_probs=66.5

Q ss_pred             CccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccC
Q psy8550         137 SIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRG  216 (332)
Q Consensus       137 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~  216 (332)
                      .|...+++.|.+..+..++.-++.++.|++++|+++...  .+..+++|++|||+.|++..++--...++ +|+.|.+++
T Consensus       165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrn  241 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRN  241 (1096)
T ss_pred             hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhh-hheeeeecc
Confidence            344445555555555555555666666666666655543  44555666666666666555533222222 366666666


Q ss_pred             CCCCCCCccccCCCCCCcEeeccCCCCcccCh-hhcCCCCCCcEEeCCCCCCC
Q psy8550         217 NFLEDLPDRLFAPLSHLEELDLGQNRISRIDQ-ACFEGLTALRILYLDDNQLR  268 (332)
Q Consensus       217 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~  268 (332)
                      |.++++-.  +.++.+|+.||+++|-+.+... ..+..+..|+.|.|.+|.+.
T Consensus       242 N~l~tL~g--ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  242 NALTTLRG--IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             cHHHhhhh--HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            66555543  3455566666666654443211 11333445555555555543

>KOG4579|consensus

Probab=98.39  E-value=1.8e-08  Score=77.56  Aligned_cols=113  Identities=27%  Similarity=0.319  Sum_probs=81.1

Q ss_pred             CccEEEeecCCCccchh---hhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEE
Q psy8550         137 SIQRLVLKYNRIKTVDS---AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLN  213 (332)
Q Consensus       137 ~L~~L~l~~~~l~~l~~---~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  213 (332)
                      .+..++|+.+.+-.++.   .+.....|+..++++|.+...++..-...+.++.|++++|.++.+ |+.+..++.|+.|+
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdv-PeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDV-PEELAAMPALRSLN  106 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhc-hHHHhhhHHhhhcc
Confidence            34566777777665555   345556677778888888877755445566788888888888887 45588888888888


Q ss_pred             ccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhc
Q psy8550         214 LRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACF  251 (332)
Q Consensus       214 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  251 (332)
                      ++.|.+...|.-+ ..+.++..|+..+|.+..++-+.|
T Consensus       107 l~~N~l~~~p~vi-~~L~~l~~Lds~~na~~eid~dl~  143 (177)
T KOG4579|consen  107 LRFNPLNAEPRVI-APLIKLDMLDSPENARAEIDVDLF  143 (177)
T ss_pred             cccCccccchHHH-HHHHhHHHhcCCCCccccCcHHHh
Confidence            8888888777654 347778888888887777755533

>KOG1644|consensus

Probab=98.32  E-value=1.2e-06  Score=72.02  Aligned_cols=86  Identities=22%  Similarity=0.178  Sum_probs=35.8

Q ss_pred             cCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccCh-hhcCCCCCCcEEeCCCCCCCCcCc---ccccCC
Q psy8550         203 FIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQ-ACFEGLTALRILYLDDNQLRSVPT---PSFIYL  278 (332)
Q Consensus       203 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l  278 (332)
                      |..++.|.+|.+++|+++.+.+..-..+++|..|.+.+|.+..+.. ..+..++.|+.|.+-+|.++....   ..+..+
T Consensus        60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~kl  139 (233)
T KOG1644|consen   60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKL  139 (233)
T ss_pred             CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEec
Confidence            3344444444444444444444333333444444444444443321 123344444444444444433221   123344


Q ss_pred             CCccEEEcCC
Q psy8550         279 GMLAELRVGL  288 (332)
Q Consensus       279 ~~L~~L~L~~  288 (332)
                      ++|+.||.++
T Consensus       140 p~l~~LDF~k  149 (233)
T KOG1644|consen  140 PSLRTLDFQK  149 (233)
T ss_pred             CcceEeehhh
Confidence            4455554443

>KOG1644|consensus

Probab=98.31  E-value=1.1e-06  Score=72.13  Aligned_cols=106  Identities=25%  Similarity=0.257  Sum_probs=87.4

Q ss_pred             CCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCc-ccccCCCCccEEE
Q psy8550         207 KSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPT-PSFIYLGMLAELR  285 (332)
Q Consensus       207 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~  285 (332)
                      .....+||++|.+..++.  |..++.|++|.+++|.|+.+.|..-.-+++|+.|.+.+|.+..+.. ..+..+++|++|.
T Consensus        42 d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             cccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            467788999999887766  7889999999999999999988766667889999999998876442 2367789999999


Q ss_pred             cCCCcCCccC---chhcCCCCCCCEEEccCCC
Q psy8550         286 VGLNVFTTLA---DGAFNGLGRLSALDLRGAG  314 (332)
Q Consensus       286 L~~n~l~~~~---~~~~~~l~~L~~L~Ls~n~  314 (332)
                      +-+|+++...   ...+..+++|++||+++-+
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            9999988653   2456789999999998654

>KOG4579|consensus

Probab=98.31  E-value=4.1e-08  Score=75.64  Aligned_cols=112  Identities=22%  Similarity=0.228  Sum_probs=74.4

Q ss_pred             CCcEEEcCCCcccccC--ccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEe
Q psy8550         184 KLVELQLNHNKLSSVN--NKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILY  261 (332)
Q Consensus       184 ~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  261 (332)
                      .+..++++.|++..+.  +..+.+...|+..+|++|.+..+|+..-...+.++.+++++|++.+++.+ +..++.|+.++
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lN  106 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLN  106 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcc
Confidence            4556677777666552  12233445566677788887777776545556677777777777777444 77777777777


Q ss_pred             CCCCCCCCcCcccccCCCCccEEEcCCCcCCccCch
Q psy8550         262 LDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADG  297 (332)
Q Consensus       262 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  297 (332)
                      ++.|.+...|. .+..+.++..|+..+|.+..++.+
T Consensus       107 l~~N~l~~~p~-vi~~L~~l~~Lds~~na~~eid~d  141 (177)
T KOG4579|consen  107 LRFNPLNAEPR-VIAPLIKLDMLDSPENARAEIDVD  141 (177)
T ss_pred             cccCccccchH-HHHHHHhHHHhcCCCCccccCcHH
Confidence            77777776665 344467777777777777666654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.28  E-value=1.2e-06  Score=54.53  Aligned_cols=40  Identities=25%  Similarity=0.360  Sum_probs=26.0

Q ss_pred             CccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCccc
Q psy8550         280 MLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMG  320 (332)
Q Consensus       280 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~  320 (332)
                      +|++|++++|+++.+++ .++++++|++|++++|+++++++
T Consensus         2 ~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             T-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCSBEGG
T ss_pred             cceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCCCCcC
Confidence            56777777777776655 46777777777777777776543

...

>KOG2120|consensus

Probab=98.26  E-value=2.7e-08  Score=86.14  Aligned_cols=175  Identities=21%  Similarity=0.201  Sum_probs=123.2

Q ss_pred             CCccEEEeecCCCc--cchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCC-cccccC-ccccCCCCCCCE
Q psy8550         136 PSIQRLVLKYNRIK--TVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN-KLSSVN-NKTFIGLKSLKV  211 (332)
Q Consensus       136 ~~L~~L~l~~~~l~--~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~  211 (332)
                      ..++.+||++..|+  .+-..++.+.+|+.|.+.++++..-....++.-.+|+.|+++.+ .++... .-.+.+++.|..
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            56899999998888  55557788999999999999988766577888899999999865 343321 123567889999


Q ss_pred             EEccCCCCCCCCcc-cc-CCCCCCcEeeccCCCC----cccChhhcCCCCCCcEEeCCCCC-CCCcCcccccCCCCccEE
Q psy8550         212 LNLRGNFLEDLPDR-LF-APLSHLEELDLGQNRI----SRIDQACFEGLTALRILYLDDNQ-LRSVPTPSFIYLGMLAEL  284 (332)
Q Consensus       212 L~L~~n~l~~~~~~-~~-~~l~~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L  284 (332)
                      |+++.|.+..-.-. +. .--++|+.|+++|+.-    ..+ ......++.|.+|+|++|. ++.-....|..++.|++|
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~-~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l  343 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHL-STLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL  343 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHH-HHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence            99999876522111 01 1125788888888632    122 2334578899999999874 443333456678899999


Q ss_pred             EcCCCcCCccCch---hcCCCCCCCEEEccCC
Q psy8550         285 RVGLNVFTTLADG---AFNGLGRLSALDLRGA  313 (332)
Q Consensus       285 ~L~~n~l~~~~~~---~~~~l~~L~~L~Ls~n  313 (332)
                      .++.|.  +++|.   .+...++|.+||+.++
T Consensus       344 SlsRCY--~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  344 SLSRCY--DIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             ehhhhc--CCChHHeeeeccCcceEEEEeccc
Confidence            998884  34443   3567788999998876

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.19  E-value=2e-06  Score=53.54  Aligned_cols=39  Identities=23%  Similarity=0.433  Sum_probs=25.1

Q ss_pred             CccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccC
Q psy8550         137 SIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIP  175 (332)
Q Consensus       137 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~  175 (332)
                      +|++|++++|+|+.+|+.++++++|++|++++|+++.++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            566777777777777666677777777777777666553

...

>KOG2982|consensus

Probab=98.15  E-value=1.2e-06  Score=76.11  Aligned_cols=83  Identities=24%  Similarity=0.294  Sum_probs=60.8

Q ss_pred             CCccEEEeecCCCc---cchhhhcCCCCCcEEEeecCcCcccCCCCC-CCCCCCcEEEcCCCcccccCc-cccCCCCCCC
Q psy8550         136 PSIQRLVLKYNRIK---TVDSAIQFYSSLQHVDLSHNQLVNIPIRGF-EPQEKLVELQLNHNKLSSVNN-KTFIGLKSLK  210 (332)
Q Consensus       136 ~~L~~L~l~~~~l~---~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~  210 (332)
                      ..++++||.+|.|+   ++...+.+++.|+.|+++.|++.... ... ..+.+|++|-+.+..+..-.. ..+..++.++
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            67889999999887   56567789999999999999887644 233 356789999998876654322 2345577788


Q ss_pred             EEEccCCCC
Q psy8550         211 VLNLRGNFL  219 (332)
Q Consensus       211 ~L~L~~n~l  219 (332)
                      .|+++.|.+
T Consensus       150 elHmS~N~~  158 (418)
T KOG2982|consen  150 ELHMSDNSL  158 (418)
T ss_pred             hhhhccchh
Confidence            888888744

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.05  E-value=4.6e-05  Score=70.34  Aligned_cols=126  Identities=17%  Similarity=0.297  Sum_probs=65.7

Q ss_pred             eEEecCCCccccCCCCCCCccEEEeec-CCCccchhhhcCCCCCcEEEeecC-cCcccCCCCCCCCCCCcEEEcCCCccc
Q psy8550         119 VVTCKEANLDVIPITLNPSIQRLVLKY-NRIKTVDSAIQFYSSLQHVDLSHN-QLVNIPIRGFEPQEKLVELQLNHNKLS  196 (332)
Q Consensus       119 ~~~c~~~~l~~lp~~~~~~L~~L~l~~-~~l~~l~~~~~~l~~L~~L~l~~~-~l~~~~~~~~~~l~~L~~L~l~~n~l~  196 (332)
                      .++..++.++.+| .+|.+|+.|.+++ +.++.+|..+  ..+|+.|++++| .+..++       .+|+.|++..+...
T Consensus        56 ~L~Is~c~L~sLP-~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-------~sLe~L~L~~n~~~  125 (426)
T PRK15386         56 RLYIKDCDIESLP-VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP-------ESVRSLEIKGSATD  125 (426)
T ss_pred             EEEeCCCCCcccC-CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc-------cccceEEeCCCCCc
Confidence            4566666777777 5777777777776 3355665543  246777777776 444433       24666666554432


Q ss_pred             ccCccccCCC-CCCCEEEccCCCCC---CCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCC
Q psy8550         197 SVNNKTFIGL-KSLKVLNLRGNFLE---DLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDN  265 (332)
Q Consensus       197 ~~~~~~~~~l-~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  265 (332)
                      .+     ..+ .+|+.|.+.++...   .++ ..  -..+|++|++++|....++ ..+.  .+|+.|.++.+
T Consensus       126 ~L-----~~LPssLk~L~I~~~n~~~~~~lp-~~--LPsSLk~L~Is~c~~i~LP-~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        126 SI-----KNVPNGLTSLSINSYNPENQARID-NL--ISPSLKTLSLTGCSNIILP-EKLP--ESLQSITLHIE  187 (426)
T ss_pred             cc-----ccCcchHhheeccccccccccccc-cc--cCCcccEEEecCCCcccCc-cccc--ccCcEEEeccc
Confidence            22     112 24555555432211   111 11  1245667777666554332 2222  36666666554

>KOG4658|consensus

Probab=98.03  E-value=4.6e-06  Score=84.81  Aligned_cols=162  Identities=25%  Similarity=0.334  Sum_probs=118.4

Q ss_pred             CCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCc--ccccCccccCCCCCCCEEEccCCC-CCCCC
Q psy8550         147 RIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK--LSSVNNKTFIGLKSLKVLNLRGNF-LEDLP  223 (332)
Q Consensus       147 ~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~  223 (332)
                      ...+.|. .......++..+.+|.+..+...  ...+.|++|-+..|.  +..+.++.|..++.|+.|||++|. +.++|
T Consensus       512 ~~~~~~~-~~~~~~~rr~s~~~~~~~~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP  588 (889)
T KOG4658|consen  512 GLSEIPQ-VKSWNSVRRMSLMNNKIEHIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP  588 (889)
T ss_pred             Ccccccc-ccchhheeEEEEeccchhhccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC
Confidence            3444443 23346778888888888777632  234479899888885  777777778899999999999874 56777


Q ss_pred             ccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCc--CCccCchhcCC
Q psy8550         224 DRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNV--FTTLADGAFNG  301 (332)
Q Consensus       224 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~  301 (332)
                      .++ +.+-+|++|++++..+..+ |..++++..|.+|++..+.-...+++....+.+|++|.+..-.  .+...-..+.+
T Consensus       589 ~~I-~~Li~LryL~L~~t~I~~L-P~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~  666 (889)
T KOG4658|consen  589 SSI-GELVHLRYLDLSDTGISHL-PSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELEN  666 (889)
T ss_pred             hHH-hhhhhhhcccccCCCcccc-chHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhc
Confidence            764 8899999999999999988 5558899999999999887665556677778999999887654  22333344556


Q ss_pred             CCCCCEEEccCC
Q psy8550         302 LGRLSALDLRGA  313 (332)
Q Consensus       302 l~~L~~L~Ls~n  313 (332)
                      +.+|+.+.....
T Consensus       667 Le~L~~ls~~~~  678 (889)
T KOG4658|consen  667 LEHLENLSITIS  678 (889)
T ss_pred             ccchhhheeecc
Confidence            666666666443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.00  E-value=3.8e-06  Score=72.14  Aligned_cols=181  Identities=20%  Similarity=0.192  Sum_probs=80.4

Q ss_pred             CCccEEEeecCCCc-----cchhhhcCCCCCcEEEeecCcCccc----------CCCCCCCCCCCcEEEcCCCcccccCc
Q psy8550         136 PSIQRLVLKYNRIK-----TVDSAIQFYSSLQHVDLSHNQLVNI----------PIRGFEPQEKLVELQLNHNKLSSVNN  200 (332)
Q Consensus       136 ~~L~~L~l~~~~l~-----~l~~~~~~l~~L~~L~l~~~~l~~~----------~~~~~~~l~~L~~L~l~~n~l~~~~~  200 (332)
                      ..++.++|++|.|.     .+..-+++-.+|+..+++.-.....          ...++.++++|++++++.|.+..-.|
T Consensus        30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~  109 (388)
T COG5238          30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP  109 (388)
T ss_pred             cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence            44556666666655     2222344445555555544221110          01234445666666666665544333


Q ss_pred             cc----cCCCCCCCEEEccCCCCCCCCcccc-------------CCCCCCcEeeccCCCCcccChh----hcCCCCCCcE
Q psy8550         201 KT----FIGLKSLKVLNLRGNFLEDLPDRLF-------------APLSHLEELDLGQNRISRIDQA----CFEGLTALRI  259 (332)
Q Consensus       201 ~~----~~~l~~L~~L~L~~n~l~~~~~~~~-------------~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~  259 (332)
                      +.    +++-..|.+|.|++|.+.-+..+-+             .+-+.|+++++..|++..-+..    .+..-..|++
T Consensus       110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~  189 (388)
T COG5238         110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKE  189 (388)
T ss_pred             hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCcee
Confidence            22    3344556666666665543322111             2234555666665555433221    1222234555


Q ss_pred             EeCCCCCCCCcCc-----ccccCCCCccEEEcCCCcCCccC----chhcCCCCCCCEEEccCCCCC
Q psy8550         260 LYLDDNQLRSVPT-----PSFIYLGMLAELRVGLNVFTTLA----DGAFNGLGRLSALDLRGAGLT  316 (332)
Q Consensus       260 L~L~~n~l~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~  316 (332)
                      +.+..|.|..-.-     ..+..+.+|+.|++++|-++-..    ..++...+.|+.|.+.+|-++
T Consensus       190 vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls  255 (388)
T COG5238         190 VKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS  255 (388)
T ss_pred             EEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence            5555555542110     11123445555555555554221    122333334555555555443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.96  E-value=6.8e-05  Score=69.28  Aligned_cols=133  Identities=17%  Similarity=0.280  Sum_probs=84.3

Q ss_pred             CCccEEEeecCCCccchhhhcCCCCCcEEEeecCc-CcccCCCCCCCCCCCcEEEcCCC-cccccCccccCCCCCCCEEE
Q psy8550         136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQ-LVNIPIRGFEPQEKLVELQLNHN-KLSSVNNKTFIGLKSLKVLN  213 (332)
Q Consensus       136 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~  213 (332)
                      .+++.|++++|.++.+|.   -..+|++|.+++|. ++.++ +.+  .++|++|++++| .+..+ |      .+|+.|+
T Consensus        52 ~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP-~~L--P~nLe~L~Ls~Cs~L~sL-P------~sLe~L~  118 (426)
T PRK15386         52 RASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLP-GSI--PEGLEKLTVCHCPEISGL-P------ESVRSLE  118 (426)
T ss_pred             cCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCC-chh--hhhhhheEccCccccccc-c------cccceEE
Confidence            678899999998888872   23469999998864 44443 333  358999999887 55544 2      3577788


Q ss_pred             ccCCCCCCCCccccCCCCCCcEeeccCCC-Cccc-ChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCc
Q psy8550         214 LRGNFLEDLPDRLFAPLSHLEELDLGQNR-ISRI-DQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNV  290 (332)
Q Consensus       214 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  290 (332)
                      +.++....++.  +  .++|+.|.+.++. .... .+..+  .++|++|++++|.....|. .+  ..+|+.|+++.|.
T Consensus       119 L~~n~~~~L~~--L--PssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i~LP~-~L--P~SLk~L~ls~n~  188 (426)
T PRK15386        119 IKGSATDSIKN--V--PNGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNIILPE-KL--PESLQSITLHIEQ  188 (426)
T ss_pred             eCCCCCccccc--C--cchHhheecccccccccccccccc--CCcccEEEecCCCcccCcc-cc--cccCcEEEecccc
Confidence            87766543321  1  1346677765432 1111 01111  2579999999888765553 22  3688999988764

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.84  E-value=7.2e-06  Score=70.48  Aligned_cols=238  Identities=18%  Similarity=0.137  Sum_probs=151.2

Q ss_pred             hhhhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCcccCCCceEEecCC----CccccCCCC--
Q psy8550          61 FEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKEA----NLDVIPITL--  134 (332)
Q Consensus        61 ~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~c~c~~~~~~~~c~~~----~l~~lp~~~--  134 (332)
                      ..+..|+.+..+++++|.+..-........+.                    ....++++..++.    ....+|..+  
T Consensus        24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia--------------------~~~~L~vvnfsd~ftgr~kde~~~~L~~   83 (388)
T COG5238          24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIA--------------------NVRNLRVVNFSDAFTGRDKDELYSNLVM   83 (388)
T ss_pred             HHHHhhcceeEEeccCCcccHHHHHHHHHHHh--------------------hhcceeEeehhhhhhcccHHHHHHHHHH
Confidence            34555778888999999887764332211111                    1223444444322    222333322  


Q ss_pred             -------CCCccEEEeecCCCc-cch----hhhcCCCCCcEEEeecCcCcccCCCCC-------------CCCCCCcEEE
Q psy8550         135 -------NPSIQRLVLKYNRIK-TVD----SAIQFYSSLQHVDLSHNQLVNIPIRGF-------------EPQEKLVELQ  189 (332)
Q Consensus       135 -------~~~L~~L~l~~~~l~-~l~----~~~~~l~~L~~L~l~~~~l~~~~~~~~-------------~~l~~L~~L~  189 (332)
                             .|.++.++|++|.+. ..|    ..+++-+.|.+|.+++|.+-.+...-+             ..-+.|+++.
T Consensus        84 Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vi  163 (388)
T COG5238          84 LLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVI  163 (388)
T ss_pred             HHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEE
Confidence                   278999999999876 333    367888999999999998775543222             3357899999


Q ss_pred             cCCCcccccCcc----ccCCCCCCCEEEccCCCCCCC--Cc---cccCCCCCCcEeeccCCCCcccCh----hhcCCCCC
Q psy8550         190 LNHNKLSSVNNK----TFIGLKSLKVLNLRGNFLEDL--PD---RLFAPLSHLEELDLGQNRISRIDQ----ACFEGLTA  256 (332)
Q Consensus       190 l~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~--~~---~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~  256 (332)
                      ..+|++..-+..    .+..-.+|+.+.+..|.+.--  ..   .-+.-+.+|+.||+..|.++....    ..+..++.
T Consensus       164 cgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~  243 (388)
T COG5238         164 CGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNL  243 (388)
T ss_pred             eccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccch
Confidence            999987654321    233335788999998887522  11   012346789999999998875433    44566777


Q ss_pred             CcEEeCCCCCCCCcCcccc------cCCCCccEEEcCCCcCCccC-c------hhcCCCCCCCEEEccCCCCCCc
Q psy8550         257 LRILYLDDNQLRSVPTPSF------IYLGMLAELRVGLNVFTTLA-D------GAFNGLGRLSALDLRGAGLTNM  318 (332)
Q Consensus       257 L~~L~L~~n~l~~~~~~~~------~~l~~L~~L~L~~n~l~~~~-~------~~~~~l~~L~~L~Ls~n~l~~l  318 (332)
                      |+.|.+..|-++.-...++      ...++|..|...+|...+-. .      ..-.+++-|..|.++||++...
T Consensus       244 lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~  318 (388)
T COG5238         244 LRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKEL  318 (388)
T ss_pred             hhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhH
Confidence            8999999998875432211      13477888888888766421 1      1124567788888888888754

>KOG2982|consensus

Probab=97.66  E-value=2.2e-05  Score=68.37  Aligned_cols=81  Identities=16%  Similarity=0.157  Sum_probs=45.0

Q ss_pred             CCCcEeeccCCCCcccCh-hhcCCCCCCcEEeCCCCCCCCcCc-ccccCCCCccEEEcCCCcCCccCc------hhcCCC
Q psy8550         231 SHLEELDLGQNRISRIDQ-ACFEGLTALRILYLDDNQLRSVPT-PSFIYLGMLAELRVGLNVFTTLAD------GAFNGL  302 (332)
Q Consensus       231 ~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l  302 (332)
                      +++..+.+..|.+..... ..+..++.+..|+|+.|++.++.. .++.+++.|+.|.+++|++.....      -.++++
T Consensus       199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL  278 (418)
T KOG2982|consen  199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARL  278 (418)
T ss_pred             ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeec
Confidence            455566666665554432 223445555566777776665432 345566777777777776654322      124566


Q ss_pred             CCCCEEEcc
Q psy8550         303 GRLSALDLR  311 (332)
Q Consensus       303 ~~L~~L~Ls  311 (332)
                      ++++.|+=+
T Consensus       279 ~~v~vLNGs  287 (418)
T KOG2982|consen  279 TKVQVLNGS  287 (418)
T ss_pred             cceEEecCc
Confidence            666665533

>KOG3665|consensus

Probab=97.53  E-value=4.2e-05  Score=76.03  Aligned_cols=110  Identities=15%  Similarity=0.185  Sum_probs=51.8

Q ss_pred             CCCCcEEEcCCCcccccC-ccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCccc-ChhhcCCCCCCcE
Q psy8550         182 QEKLVELQLNHNKLSSVN-NKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRI-DQACFEGLTALRI  259 (332)
Q Consensus       182 l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~  259 (332)
                      +|+|+.|.+.+-.+..-. -....++++|..||+++++++.+  ..++.+++|+.|.+.+=.+..- .-..+-++++|++
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v  224 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV  224 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence            455555555543332210 12233455555556665555555  1235555555555554444321 1122334566666


Q ss_pred             EeCCCCCCCCcCc------ccccCCCCccEEEcCCCcCCc
Q psy8550         260 LYLDDNQLRSVPT------PSFIYLGMLAELRVGLNVFTT  293 (332)
Q Consensus       260 L~L~~n~l~~~~~------~~~~~l~~L~~L~L~~n~l~~  293 (332)
                      ||+|.......+.      +.-..++.|+.||.+++.+.+
T Consensus       225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             eeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            6665544333221      111235666666666666654

>KOG3665|consensus

Probab=97.42  E-value=0.00012  Score=72.88  Aligned_cols=132  Identities=22%  Similarity=0.259  Sum_probs=93.3

Q ss_pred             CCCcEEEcCCCccccc-CccccC-CCCCCCEEEccCCCCCCCC-ccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcE
Q psy8550         183 EKLVELQLNHNKLSSV-NNKTFI-GLKSLKVLNLRGNFLEDLP-DRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRI  259 (332)
Q Consensus       183 ~~L~~L~l~~n~l~~~-~~~~~~-~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  259 (332)
                      .+|+.|++++.....- -+..++ -+|+|+.|.+++=.+..-. .....++++|..||++++.++.+  ..++++++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            5788888887543221 122233 3789999999886654322 23347789999999999999987  45889999999


Q ss_pred             EeCCCCCCCCcC-cccccCCCCccEEEcCCCcCCccC---c---hhcCCCCCCCEEEccCCCCC
Q psy8550         260 LYLDDNQLRSVP-TPSFIYLGMLAELRVGLNVFTTLA---D---GAFNGLGRLSALDLRGAGLT  316 (332)
Q Consensus       260 L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~---~---~~~~~l~~L~~L~Ls~n~l~  316 (332)
                      |.+.+=.+.... -..+-.+++|+.||+|..+.....   .   +.-..+++|+.||.|++.+.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            988775555321 124557899999999987665433   1   23456899999999988765

>KOG2739|consensus

Probab=97.40  E-value=6.2e-05  Score=64.43  Aligned_cols=103  Identities=28%  Similarity=0.355  Sum_probs=62.7

Q ss_pred             cCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCC--cccccCccccCCCCCCCEEEccCCCCCC---CCccccCCC
Q psy8550         156 QFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN--KLSSVNNKTFIGLKSLKVLNLRGNFLED---LPDRLFAPL  230 (332)
Q Consensus       156 ~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l  230 (332)
                      ..+..|+.|.+.+..++.+.  .|..+++|++|.++.|  ++.+-.+.....+++|+++++++|++..   +.+  +..+
T Consensus        40 d~~~~le~ls~~n~gltt~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~l  115 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTLT--NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKEL  115 (260)
T ss_pred             ccccchhhhhhhccceeecc--cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhhh
Confidence            34455666666666666553  4566778888888877  4443323333455788888888887663   223  3556


Q ss_pred             CCCcEeeccCCCCcccCh---hhcCCCCCCcEEeC
Q psy8550         231 SHLEELDLGQNRISRIDQ---ACFEGLTALRILYL  262 (332)
Q Consensus       231 ~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L  262 (332)
                      .+|..|++.+|..+....   ..|.-+++|+.|+-
T Consensus       116 ~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  116 ENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             cchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence            677778887776654322   33455566666553

>KOG2123|consensus

Probab=97.36  E-value=4.7e-06  Score=71.78  Aligned_cols=79  Identities=29%  Similarity=0.296  Sum_probs=34.8

Q ss_pred             CCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCc-cccCCCCCCcEeec
Q psy8550         160 SLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPD-RLFAPLSHLEELDL  238 (332)
Q Consensus       160 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L  238 (332)
                      +.+.|++-+|.+..|.  ....|+.|++|.|+-|+|+.+.|  |..+++|+.|+|..|.|..+.+ ..+.++++|+.|.|
T Consensus        20 ~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HhhhhcccCCCccHHH--HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            3444444444444432  22334444444444444444433  3344444444444444444432 11244445555555


Q ss_pred             cCCC
Q psy8550         239 GQNR  242 (332)
Q Consensus       239 ~~n~  242 (332)
                      ..|.
T Consensus        96 ~ENP   99 (388)
T KOG2123|consen   96 DENP   99 (388)
T ss_pred             ccCC
Confidence            4443

>KOG2120|consensus

Probab=97.34  E-value=1.4e-05  Score=69.69  Aligned_cols=155  Identities=20%  Similarity=0.103  Sum_probs=107.3

Q ss_pred             CCccEEEeecCCCc-cchhhhcCCCCCcEEEeecC-cCcccCC-CCCCCCCCCcEEEcCCCcccccCc-cccCC-CCCCC
Q psy8550         136 PSIQRLVLKYNRIK-TVDSAIQFYSSLQHVDLSHN-QLVNIPI-RGFEPQEKLVELQLNHNKLSSVNN-KTFIG-LKSLK  210 (332)
Q Consensus       136 ~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~~-~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~-l~~L~  210 (332)
                      ..++.|.+.++.+. .+-..+++..+|+.|+++.+ .+++-.. -.+..++.|..|++++|.+....- ..+.+ -.+|+
T Consensus       210 ~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~  289 (419)
T KOG2120|consen  210 SKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLT  289 (419)
T ss_pred             HhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhh
Confidence            67899999999988 56678999999999999997 4554221 235678999999999987654221 11222 25789


Q ss_pred             EEEccCCCCC---CCCccccCCCCCCcEeeccCCC-CcccChhhcCCCCCCcEEeCCCCCCCCcCcc---cccCCCCccE
Q psy8550         211 VLNLRGNFLE---DLPDRLFAPLSHLEELDLGQNR-ISRIDQACFEGLTALRILYLDDNQLRSVPTP---SFIYLGMLAE  283 (332)
Q Consensus       211 ~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~  283 (332)
                      .|+++|+.=.   .-.......+++|..|||++|- ++.--...|-.++.|++|.++.|..  ++|.   .+...++|.+
T Consensus       290 ~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~y  367 (419)
T KOG2120|consen  290 QLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVY  367 (419)
T ss_pred             hhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEE
Confidence            9999987421   1111223668999999999874 3322123456788999999998854  4443   3567789999


Q ss_pred             EEcCCCcCC
Q psy8550         284 LRVGLNVFT  292 (332)
Q Consensus       284 L~L~~n~l~  292 (332)
                      |+.-|+-=.
T Consensus       368 Ldv~g~vsd  376 (419)
T KOG2120|consen  368 LDVFGCVSD  376 (419)
T ss_pred             EEeccccCc
Confidence            998876433

>KOG2123|consensus

Probab=97.29  E-value=1.2e-05  Score=69.35  Aligned_cols=100  Identities=26%  Similarity=0.317  Sum_probs=73.3

Q ss_pred             CCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccCh-hhcCCCCCCcEE
Q psy8550         182 QEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQ-ACFEGLTALRIL  260 (332)
Q Consensus       182 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L  260 (332)
                      +.+.+.|++.+|.+..+.  ...+|+.|+.|.|+-|+++.+.+  +..+++|++|+|..|.|.++.. .-+.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            556778888888887763  35578888888888888888877  5778888888888888877643 456778888888


Q ss_pred             eCCCCCCCCcCc-----ccccCCCCccEEE
Q psy8550         261 YLDDNQLRSVPT-----PSFIYLGMLAELR  285 (332)
Q Consensus       261 ~L~~n~l~~~~~-----~~~~~l~~L~~L~  285 (332)
                      -|..|.-.+-.+     ..+..+++|+.||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            888887665433     2344566666665

>KOG2739|consensus

Probab=97.23  E-value=0.00017  Score=61.71  Aligned_cols=106  Identities=27%  Similarity=0.297  Sum_probs=65.8

Q ss_pred             CCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCC--CCcccChhhcCCCCCCcEEeCCCCCCCCcCc-ccccCCCCcc
Q psy8550         206 LKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQN--RISRIDQACFEGLTALRILYLDDNQLRSVPT-PSFIYLGMLA  282 (332)
Q Consensus       206 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~  282 (332)
                      +..|+.+++.+..++.+..  |..+++|+.|.++.|  ++..-.+-....+++|+++++++|++..+.. ..+..+.+|.
T Consensus        42 ~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~  119 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK  119 (260)
T ss_pred             ccchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence            4566666677666666544  566788888888888  3332112223345888888888888775321 1244566777


Q ss_pred             EEEcCCCcCCccCc---hhcCCCCCCCEEEccCC
Q psy8550         283 ELRVGLNVFTTLAD---GAFNGLGRLSALDLRGA  313 (332)
Q Consensus       283 ~L~L~~n~l~~~~~---~~~~~l~~L~~L~Ls~n  313 (332)
                      .|++.+|..+..-.   ..|.-+++|.+||-.+.
T Consensus       120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             hhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence            88888887665432   34555666666665444

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.33  E-value=0.0012  Score=34.24  Aligned_cols=19  Identities=37%  Similarity=0.555  Sum_probs=10.4

Q ss_pred             CCEEEccCCCCCCccccccc
Q psy8550         305 LSALDLRGAGLTNMMGHSMA  324 (332)
Q Consensus       305 L~~L~Ls~n~l~~l~~~~~~  324 (332)
                      |++||+++|+++.+|++ |+
T Consensus         2 L~~Ldls~n~l~~ip~~-~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSS-FS   20 (22)
T ss_dssp             ESEEEETSSEESEEGTT-TT
T ss_pred             ccEEECCCCcCEeCChh-hc
Confidence            45566666655555544 44

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=95.91  E-value=0.0066  Score=32.78  Aligned_cols=23  Identities=26%  Similarity=0.355  Sum_probs=18.9

Q ss_pred             CCCCCEEEccCCCCCCccccccc
Q psy8550         302 LGRLSALDLRGAGLTNMMGHSMA  324 (332)
Q Consensus       302 l~~L~~L~Ls~n~l~~l~~~~~~  324 (332)
                      +++|+.|+|++|+|+.+|+.+|+
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            45788888888888888888876

>smart00370 LRR Leucine-rich repeats, outliers

Probab=95.91  E-value=0.0066  Score=32.78  Aligned_cols=23  Identities=26%  Similarity=0.355  Sum_probs=18.9

Q ss_pred             CCCCCEEEccCCCCCCccccccc
Q psy8550         302 LGRLSALDLRGAGLTNMMGHSMA  324 (332)
Q Consensus       302 l~~L~~L~Ls~n~l~~l~~~~~~  324 (332)
                      +++|+.|+|++|+|+.+|+.+|+
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            45788888888888888888876

>smart00013 LRRNT Leucine rich repeat N-terminal domain

Probab=95.82  E-value=0.012  Score=33.89  Aligned_cols=31  Identities=32%  Similarity=0.877  Sum_probs=26.5

Q ss_pred             CCCCCCcccCCCceEEecCCCccccCCCCCCCc
Q psy8550         106 FCPPDCDCNDETLVVTCKEANLDVIPITLNPSI  138 (332)
Q Consensus       106 ~~p~~c~c~~~~~~~~c~~~~l~~lp~~~~~~L  138 (332)
                      .||..|.|..  ..++|.+.++..+|.+++.+.
T Consensus         1 ~CP~~C~C~~--~~V~C~~~~L~~vP~~iP~~t   31 (33)
T smart00013        1 ACPAPCNCSG--TAVDCSGRGLTEVPLDLPPDT   31 (33)
T ss_pred             CcCCCCEECC--CEeEeCCCCcCccCCCCCccc
Confidence            4999999994  479999999999999887553

>PF01462 LRRNT: Leucine rich repeat N-terminal domain; InterPro: IPR000372 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.70  E-value=0.0086  Score=33.07  Aligned_cols=28  Identities=32%  Similarity=0.791  Sum_probs=21.7

Q ss_pred             CCCCCCcccCCCceEEecCCCccccCCCCC
Q psy8550         106 FCPPDCDCNDETLVVTCKEANLDVIPITLN  135 (332)
Q Consensus       106 ~~p~~c~c~~~~~~~~c~~~~l~~lp~~~~  135 (332)
                      .||..|.|...  .++|++.+++++|.+++
T Consensus         1 ~CP~~C~C~~~--~V~C~~~~L~~vP~~lP   28 (28)
T PF01462_consen    1 ACPRPCTCSGL--TVDCSGRGLTAVPSDLP   28 (28)
T ss_dssp             SSETTSEEETT--EEEETTSS-SSS-STS-
T ss_pred             CcCCCCEecCC--EeECCCCCCCccCCCCc
Confidence            48999999944  79999999999998764

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. LRRs are often flanked by cysteine-rich domains: an N-terminal LRR domain and a C-terminal LRR domain (IPR000483 from INTERPRO). This entry represents the N-terminal LRR domain. ; PDB: 3E6J_A 1W8A_A 2V9S_C 2V9T_B 3TWI_D 3ZYN_A 3ZYO_A 1OOK_G 1QYY_G 1SQ0_B ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.67  E-value=0.0079  Score=28.97  Aligned_cols=16  Identities=38%  Similarity=0.503  Sum_probs=8.3

Q ss_pred             CCCEEEccCCCCCCcc
Q psy8550         304 RLSALDLRGAGLTNMM  319 (332)
Q Consensus       304 ~L~~L~Ls~n~l~~l~  319 (332)
                      +|++|++++|+++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            5677777777776654

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.36  E-value=0.0079  Score=31.12  Aligned_cols=15  Identities=53%  Similarity=0.795  Sum_probs=7.2

Q ss_pred             CcEEEeecCcCcccC
Q psy8550         161 LQHVDLSHNQLVNIP  175 (332)
Q Consensus       161 L~~L~l~~~~l~~~~  175 (332)
                      |++|++++|+++.++
T Consensus         2 L~~Ldls~n~l~~ip   16 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIP   16 (22)
T ss_dssp             ESEEEETSSEESEEG
T ss_pred             ccEEECCCCcCEeCC
Confidence            444555555544444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.52  E-value=0.033  Score=29.94  Aligned_cols=21  Identities=38%  Similarity=0.589  Sum_probs=11.4

Q ss_pred             CCCCEEEccCCCCCCCCcccc
Q psy8550         207 KSLKVLNLRGNFLEDLPDRLF  227 (332)
Q Consensus       207 ~~L~~L~L~~n~l~~~~~~~~  227 (332)
                      ++|++|+|++|.++.+|+++|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            345555555555555555544

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.52  E-value=0.033  Score=29.94  Aligned_cols=21  Identities=38%  Similarity=0.589  Sum_probs=11.4

Q ss_pred             CCCCEEEccCCCCCCCCcccc
Q psy8550         207 KSLKVLNLRGNFLEDLPDRLF  227 (332)
Q Consensus       207 ~~L~~L~L~~n~l~~~~~~~~  227 (332)
                      ++|++|+|++|.++.+|+++|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            345555555555555555544

>KOG1947|consensus

Probab=94.48  E-value=0.0051  Score=58.80  Aligned_cols=107  Identities=23%  Similarity=0.265  Sum_probs=49.0

Q ss_pred             CCccEEEeecCC-Ccc--chhhhcCCCCCcEEEeecC-cCcccC----CCCCCCCCCCcEEEcCCCc-ccccCccccCC-
Q psy8550         136 PSIQRLVLKYNR-IKT--VDSAIQFYSSLQHVDLSHN-QLVNIP----IRGFEPQEKLVELQLNHNK-LSSVNNKTFIG-  205 (332)
Q Consensus       136 ~~L~~L~l~~~~-l~~--l~~~~~~l~~L~~L~l~~~-~l~~~~----~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~-  205 (332)
                      +.++.+.+.++. +..  +-+.....++|+.|+++++ ......    ......+++|+.|+++++. ++...-..+.. 
T Consensus       188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~  267 (482)
T KOG1947|consen  188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR  267 (482)
T ss_pred             chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence            455555555442 332  3344555666666666652 111111    0122334566666666554 33322222222 


Q ss_pred             CCCCCEEEccCCC-CCCCC-ccccCCCCCCcEeeccCCC
Q psy8550         206 LKSLKVLNLRGNF-LEDLP-DRLFAPLSHLEELDLGQNR  242 (332)
Q Consensus       206 l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~L~~n~  242 (332)
                      +++|+.|.+.++. ++... ......++.|++|+++++.
T Consensus       268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            4566666655554 33211 1112345556666666553

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.12  E-value=0.034  Score=26.72  Aligned_cols=12  Identities=42%  Similarity=0.600  Sum_probs=3.8

Q ss_pred             CCEEEccCCCCC
Q psy8550         209 LKVLNLRGNFLE  220 (332)
Q Consensus       209 L~~L~L~~n~l~  220 (332)
                      |+.|++++|+++
T Consensus         3 L~~L~l~~n~L~   14 (17)
T PF13504_consen    3 LRTLDLSNNRLT   14 (17)
T ss_dssp             -SEEEETSS--S
T ss_pred             cCEEECCCCCCC
Confidence            344444444443

...

>KOG4308|consensus

Probab=93.70  E-value=0.00057  Score=65.18  Aligned_cols=180  Identities=27%  Similarity=0.292  Sum_probs=113.6

Q ss_pred             ccEEEeecCCCc-----cchhhhcCCCCCcEEEeecCcCcccCC----CCCCCC-CCCcEEEcCCCcccccC----cccc
Q psy8550         138 IQRLVLKYNRIK-----TVDSAIQFYSSLQHVDLSHNQLVNIPI----RGFEPQ-EKLVELQLNHNKLSSVN----NKTF  203 (332)
Q Consensus       138 L~~L~l~~~~l~-----~l~~~~~~l~~L~~L~l~~~~l~~~~~----~~~~~l-~~L~~L~l~~n~l~~~~----~~~~  203 (332)
                      +..+.+.+|.+.     .+-..+.....|+.|++++|.+.....    ..+... ..+++|++..|.++...    ...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            566777777665     334466777888888888887763221    122222 55677777777666542    3445


Q ss_pred             CCCCCCCEEEccCCCCCCC----Cccc----cCCCCCCcEeeccCCCCcccC----hhhcCCCCC-CcEEeCCCCCCCCc
Q psy8550         204 IGLKSLKVLNLRGNFLEDL----PDRL----FAPLSHLEELDLGQNRISRID----QACFEGLTA-LRILYLDDNQLRSV  270 (332)
Q Consensus       204 ~~l~~L~~L~L~~n~l~~~----~~~~----~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~-L~~L~L~~n~l~~~  270 (332)
                      .....++.++++.|.+...    .+..    +....++++|.+.+|.++...    ...+...+. +..+++..|.+.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            5567788888888876421    1111    224667888888888776322    133444555 66688888888754


Q ss_pred             Cc----ccccCC-CCccEEEcCCCcCCccC----chhcCCCCCCCEEEccCCCCCC
Q psy8550         271 PT----PSFIYL-GMLAELRVGLNVFTTLA----DGAFNGLGRLSALDLRGAGLTN  317 (332)
Q Consensus       271 ~~----~~~~~l-~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~  317 (332)
                      ..    ..+..+ ..++.++++.|.++...    ...+..+..++.+.+++|.+..
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            21    133344 56788899999888543    3455667788888888887754

>KOG3864|consensus

Probab=90.77  E-value=0.033  Score=46.30  Aligned_cols=33  Identities=21%  Similarity=0.090  Sum_probs=15.2

Q ss_pred             CCccEEEcCCC-cCCccCchhcCCCCCCCEEEcc
Q psy8550         279 GMLAELRVGLN-VFTTLADGAFNGLGRLSALDLR  311 (332)
Q Consensus       279 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls  311 (332)
                      ++|+.|++++| +|+.---..+..+++|+.|.+.
T Consensus       151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~  184 (221)
T KOG3864|consen  151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY  184 (221)
T ss_pred             cchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence            44555555554 3443333344444444444443

>KOG0473|consensus

Probab=89.43  E-value=0.0058  Score=51.83  Aligned_cols=84  Identities=20%  Similarity=0.177  Sum_probs=64.7

Q ss_pred             CCCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEc
Q psy8550         135 NPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNL  214 (332)
Q Consensus       135 ~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  214 (332)
                      +..++.||++.|++..+...++.++.+..|+++.|++...+ ..+..+..++.+++..|+.+.. |.+++..++++++++
T Consensus        41 ~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~-~d~~q~~e~~~~~~~~n~~~~~-p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLP-KDAKQQRETVNAASHKNNHSQQ-PKSQKKEPHPKKNEQ  118 (326)
T ss_pred             cceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhCh-hhHHHHHHHHHHHhhccchhhC-CccccccCCcchhhh
Confidence            36778888888887777777777788888888888877766 5567777777777777777666 677888888888888


Q ss_pred             cCCCCC
Q psy8550         215 RGNFLE  220 (332)
Q Consensus       215 ~~n~l~  220 (332)
                      .+|.+.
T Consensus       119 k~~~~~  124 (326)
T KOG0473|consen  119 KKTEFF  124 (326)
T ss_pred             ccCcch
Confidence            877654

>KOG3864|consensus

Probab=89.21  E-value=0.059  Score=44.82  Aligned_cols=30  Identities=23%  Similarity=0.137  Sum_probs=22.8

Q ss_pred             CCCCCEEEccCC-CCCCcccccccCCCCccc
Q psy8550         302 LGRLSALDLRGA-GLTNMMGHSMALGDYLHW  331 (332)
Q Consensus       302 l~~L~~L~Ls~n-~l~~l~~~~~~~l~~L~~  331 (332)
                      .++|+.|++++| +|++-.-..+..+++|+.
T Consensus       150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  150 APSLQDLDLSGCPRITDGGLACLLKLKNLRR  180 (221)
T ss_pred             ccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence            478999999999 688766666666666654

>KOG0473|consensus

Probab=88.54  E-value=0.008  Score=51.01  Aligned_cols=83  Identities=23%  Similarity=0.159  Sum_probs=37.9

Q ss_pred             CCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEc
Q psy8550         207 KSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRV  286 (332)
Q Consensus       207 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  286 (332)
                      ...+.||++.|++..+... |+.++.+..++++.|.+.-. |..++.+..++.+++..|..+..|- +++..++++++++
T Consensus        42 kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~sknq~~~~-~~d~~q~~e~~~~~~~~n~~~~~p~-s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   42 KRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKNQIKFL-PKDAKQQRETVNAASHKNNHSQQPK-SQKKEPHPKKNEQ  118 (326)
T ss_pred             ceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHhhHhhC-hhhHHHHHHHHHHHhhccchhhCCc-cccccCCcchhhh
Confidence            3344444444444333322 23344445555555554443 3334444444444444444444433 4555555555555


Q ss_pred             CCCcCC
Q psy8550         287 GLNVFT  292 (332)
Q Consensus       287 ~~n~l~  292 (332)
                      .+|.+.
T Consensus       119 k~~~~~  124 (326)
T KOG0473|consen  119 KKTEFF  124 (326)
T ss_pred             ccCcch
Confidence            555443

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=86.89  E-value=0.58  Score=25.23  Aligned_cols=18  Identities=28%  Similarity=0.403  Sum_probs=12.5

Q ss_pred             CCCCCEEEccCCCCCCcc
Q psy8550         302 LGRLSALDLRGAGLTNMM  319 (332)
Q Consensus       302 l~~L~~L~Ls~n~l~~l~  319 (332)
                      +++|+.|+++.|+|+.+.
T Consensus         1 L~~L~~L~L~~NkI~~IE   18 (26)
T smart00365        1 LTNLEELDLSQNKIKKIE   18 (26)
T ss_pred             CCccCEEECCCCccceec
Confidence            356778888888776653

>KOG4308|consensus

Probab=85.88  E-value=0.0096  Score=56.94  Aligned_cols=158  Identities=26%  Similarity=0.334  Sum_probs=96.3

Q ss_pred             CCccEEEeecCCCccc-----hhhhcCC-CCCcEEEeecCcCcccCC----CCCCCCCCCcEEEcCCCccccc----Ccc
Q psy8550         136 PSIQRLVLKYNRIKTV-----DSAIQFY-SSLQHVDLSHNQLVNIPI----RGFEPQEKLVELQLNHNKLSSV----NNK  201 (332)
Q Consensus       136 ~~L~~L~l~~~~l~~l-----~~~~~~l-~~L~~L~l~~~~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~----~~~  201 (332)
                      +.+..|++++|.+...     -..+... ..+++|++..|.++....    ..+.....++.++++.|.+...    .+.
T Consensus       115 ~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~  194 (478)
T KOG4308|consen  115 PTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQ  194 (478)
T ss_pred             ccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhh
Confidence            5677788888877621     1123332 456667777777664331    2344467777888887766321    122


Q ss_pred             ccC----CCCCCCEEEccCCCCCCCC----ccccCCCCC-CcEeeccCCCCcccCh----hhcCCC-CCCcEEeCCCCCC
Q psy8550         202 TFI----GLKSLKVLNLRGNFLEDLP----DRLFAPLSH-LEELDLGQNRISRIDQ----ACFEGL-TALRILYLDDNQL  267 (332)
Q Consensus       202 ~~~----~l~~L~~L~L~~n~l~~~~----~~~~~~l~~-L~~L~L~~n~l~~~~~----~~~~~l-~~L~~L~L~~n~l  267 (332)
                      .+.    ...++++|.+.+|.++...    ...+...+. +..+++..|++.+...    ..+..+ ..+++++++.|.+
T Consensus       195 ~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi  274 (478)
T KOG4308|consen  195 ALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSI  274 (478)
T ss_pred             hhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCc
Confidence            233    4667888888888876221    122333444 6668888887764421    234444 5678888888888


Q ss_pred             CCcCc----ccccCCCCccEEEcCCCcCCc
Q psy8550         268 RSVPT----PSFIYLGMLAELRVGLNVFTT  293 (332)
Q Consensus       268 ~~~~~----~~~~~l~~L~~L~L~~n~l~~  293 (332)
                      ++...    ..+..+..++.+.+++|.+..
T Consensus       275 ~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  275 TEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             cccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            76443    233455688888888888874

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=85.83  E-value=0.53  Score=25.32  Aligned_cols=18  Identities=22%  Similarity=0.301  Sum_probs=14.3

Q ss_pred             CCCCEEEccCCCCCCccc
Q psy8550         303 GRLSALDLRGAGLTNMMG  320 (332)
Q Consensus       303 ~~L~~L~Ls~n~l~~l~~  320 (332)
                      .+|+.|++++|+++++|.
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            367888888888888876

>KOG1947|consensus

Probab=82.68  E-value=0.59  Score=44.54  Aligned_cols=132  Identities=20%  Similarity=0.145  Sum_probs=76.4

Q ss_pred             CCCCcEEEcCCCc-cccc-CccccCCCCCCCEEEccCC--CCCCCC---ccccCCCCCCcEeeccCCC-CcccChhhcCC
Q psy8550         182 QEKLVELQLNHNK-LSSV-NNKTFIGLKSLKVLNLRGN--FLEDLP---DRLFAPLSHLEELDLGQNR-ISRIDQACFEG  253 (332)
Q Consensus       182 l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~L~~n--~l~~~~---~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~  253 (332)
                      .+.|+.+.+.++. +... .-......+.|+.|+++++  .....+   ......+.+|+.++++++. +++..-..+..
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            6778888777653 3321 1123456788999998873  111111   1123456788888888877 55554443433


Q ss_pred             -CCCCcEEeCCCCC-CCCcCcccc-cCCCCccEEEcCCCcCCcc--CchhcCCCCCCCEEEccCC
Q psy8550         254 -LTALRILYLDDNQ-LRSVPTPSF-IYLGMLAELRVGLNVFTTL--ADGAFNGLGRLSALDLRGA  313 (332)
Q Consensus       254 -l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~n  313 (332)
                       +++|+.|.+.++. +++..-..+ ..++.|++|+++++...+.  ......++++++.|.+...
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~  331 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL  331 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence             7788888877776 443322222 3567789999988755311  2222444666666554433

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=82.50  E-value=0.2  Score=26.25  Aligned_cols=14  Identities=36%  Similarity=0.487  Sum_probs=6.1

Q ss_pred             CCCCEEEccCCCCC
Q psy8550         303 GRLSALDLRGAGLT  316 (332)
Q Consensus       303 ~~L~~L~Ls~n~l~  316 (332)
                      ++|++|+|++|+|+
T Consensus         2 ~~L~~L~l~~n~i~   15 (24)
T PF13516_consen    2 PNLETLDLSNNQIT   15 (24)
T ss_dssp             TT-SEEE-TSSBEH
T ss_pred             CCCCEEEccCCcCC
Confidence            34555555555544

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	332
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		3e-19
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		2e-17
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		2e-17
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		7e-09
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		3e-17
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		1e-04
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		3e-17
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		1e-04
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		2e-15
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		4e-15
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		5e-15
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		1e-14
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		1e-14
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		2e-10
2wfh_A	193	The Human Slit 2 Dimerization Domain D4 Length = 19		2e-14
2wfh_A	193	The Human Slit 2 Dimerization Domain D4 Length = 19		5e-06
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		2e-14
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		2e-10
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		4e-14
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		4e-13
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		6e-10
3zyi_A	452	Netring2 In Complex With Ngl2 Length = 452		5e-14
3zyi_A	452	Netring2 In Complex With Ngl2 Length = 452		1e-09
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		3e-13
2v9s_A	220	Second Lrr Domain Of Human Slit2 Length = 220		3e-12
2v9t_B	220	Complex Between The Second Lrr Domain Of Slit2 And		6e-12
2o6r_A	177	Structural Diversity Of The Hagfish Variable Lympho		1e-11
2v70_A	220	Third Lrr Domain Of Human Slit2 Length = 220		1e-11
2v70_A	220	Third Lrr Domain Of Human Slit2 Length = 220		2e-11
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		1e-11
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		1e-04
3v47_A	455	Crystal Structure Of The N-Tetminal Fragment Of Zeb		2e-11
3j0a_A	844	Homology Model Of Human Toll-Like Receptor 5 Fitted		3e-11
3j0a_A	844	Homology Model Of Human Toll-Like Receptor 5 Fitted		4e-08
1u0n_D	265	The Ternary Von Willebrand Factor A1-Glycoprotein I		7e-11
3p72_A	269	Structure Of Platelet Glycoprotein 1b Alpha With A		7e-11
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		8e-11
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		1e-06
1m0z_A	290	Crystal Structure Of The Von Willebrand Factor Bind		9e-11
1m10_B	290	Crystal Structure Of The Complex Of Glycoprotein Ib		9e-11
1p8v_A	279	Crystal Structure Of The Complex Of Platelet Recept		1e-10
1p9a_G	290	Crystal Structure Of N-terminal Domain Of Human Pla		1e-10
1gwb_B	281	Structure Of Glycoprotein 1b Length = 281		1e-10
1ook_G	290	Crystal Structure Of The Complex Of Platelet Recept		1e-10
3pmh_G	290	Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib		1e-10
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		2e-10
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		2e-06
1sq0_B	288	Crystal Structure Of The Complex Of The Wild-Type V		2e-10
1w8a_A	192	Third Lrr Domain Of Drosophila Slit Length = 192		4e-10
1w8a_A	192	Third Lrr Domain Of Drosophila Slit Length = 192		5e-09
2xot_A	361	Crystal Structure Of Neuronal Leucine Rich Repeat P		4e-10
2xot_A	361	Crystal Structure Of Neuronal Leucine Rich Repeat P		4e-05
1xku_A	330	Crystal Structure Of The Dimeric Protein Core Of De		8e-10
1xcd_A	329	Dimeric Bovine Tissue-Extracted Decorin, Crystal Fo		8e-10
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		1e-09
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		1e-04
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		1e-09
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		1e-04
2z66_A	306	Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A		2e-09
2ft3_A	332	Crystal Structure Of The Biglycan Dimer Core Protei		7e-09
2ft3_A	332	Crystal Structure Of The Biglycan Dimer Core Protei		1e-06
3v44_A	407	Crystal Structure Of The N-Terminal Fragment Of Zeb		3e-08
1ziw_A	680	Human Toll-Like Receptor 3 Extracellular Domain Str		3e-08
1ziw_A	680	Human Toll-Like Receptor 3 Extracellular Domain Str		6e-07
3ulu_A	694	Structure Of Quaternary Complex Of Human Tlr3ecd Wi		3e-08
3ulu_A	694	Structure Of Quaternary Complex Of Human Tlr3ecd Wi		7e-07
2a0z_A	705	The Molecular Structure Of Toll-like Receptor 3 Lig		3e-08
2a0z_A	705	The Molecular Structure Of Toll-like Receptor 3 Lig		6e-07
3twi_D	179	Variable Lymphocyte Receptor Recognition Of The Imm		4e-08
3g3b_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		1e-07
3g3b_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		2e-04
3g3a_A	178	Structure Of A Lamprey Variable Lymphocyte Receptor		2e-07
3g3a_A	178	Structure Of A Lamprey Variable Lymphocyte Receptor		2e-04
3g39_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		2e-07
3g39_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		2e-04
2z64_A	599	Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Comp		5e-07
3a79_A	580	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		5e-07
3vq1_A	606	Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLE		5e-07
2z81_A	549	Crystal Structure Of The Tlr1-tlr2 Heterodimer Indu		6e-07
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		1e-06
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		1e-06
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		1e-06
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		1e-06
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		1e-06
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		1e-06
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		1e-06
4arn_A	279	Crystal Structure Of The N-terminal Domain Of Droso		2e-06
3ula_A	279	Crystal Structure Of The Tv3 Mutant F63w-Md-2-Erito		3e-05
3ula_A	279	Crystal Structure Of The Tv3 Mutant F63w-Md-2-Erito		3e-05
3ul7_A	278	Crystal Structure Of The Tv3 Mutant F63w Length = 2		3e-05
3ul7_A	278	Crystal Structure Of The Tv3 Mutant F63w Length = 2		4e-05
2z62_A	276	Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 A		3e-05
3ul9_A	278	Structure Of The Tv3 Mutant M41e Length = 278		3e-05
3ul8_A	279	Crystal Structure Of The Tv3 Mutant V134l Length =		4e-05
3ul8_A	279	Crystal Structure Of The Tv3 Mutant V134l Length =		5e-05
2z80_A	353	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		6e-05
2z80_A	353	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		6e-04
2z7x_A	549	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		8e-05
2z7x_A	549	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		6e-04
2r9u_A	174	Crystal Structure Of Lamprey Variable Lymphocyte Re		1e-04
2r9u_A	174	Crystal Structure Of Lamprey Variable Lymphocyte Re		1e-04
1xeu_A	263	Crystal Structure Of Internalin C From Listeria Mon		1e-04
1xeu_A	263	Crystal Structure Of Internalin C From Listeria Mon		3e-04
3o6n_A	390	Crystal Structure Of Apl1 Leucine-Rich Repeat Domai		2e-04
3rg1_A	612	Crystal Structure Of The Rp105MD-1 Complex Length =		5e-04

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 107/211 (50%), Gaps = 4/211 (1%)
Query: 105 AFCPPD---CDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSS 160
           A C  D   C CN+    V C    L  IP  +    ++L L+ N++ ++ S A    + 
Sbjct: 3   ALCKKDGGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTK 62
Query: 161 LQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLE 220
           L+ + L+ N+L  +P   F+  + L  L +  NKL ++    F  L +L  L L  N L+
Sbjct: 63  LRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK 122
Query: 221 DLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGM 280
            LP R+F  L+ L  L LG N +  + +  F+ LT+L+ L L +NQL+ VP  +F  L  
Sbjct: 123 SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTE 182
Query: 281 LAELRVGLNVFTTLADGAFNGLGRLSALDLR 311
           L  L++  N    + +GAF+ L +L  L L+
Sbjct: 183 LKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ 213

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 103/219 (47%), Gaps = 4/219 (1%)
Query: 102 QASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSS 160
           +    CP  C C+++   V C    L  +P ++  + + L L+ N I+ + +   +    
Sbjct: 1   ETGTSCPAACSCSNQASRVICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRH 60
Query: 161 LQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLE 220
           L+ + LS N +  I +  F     L  L+L  N+L++V  + F  L  L+ L LR N +E
Sbjct: 61  LEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE 120
Query: 221 DLPDRLFAPLSHLEELDLGQ-NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLG 279
            +P   F  +  L  LDLG+  R+  I +A FEGL  LR L L    L+ +  P+   L 
Sbjct: 121 SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDI--PNLTALV 178
Query: 280 MLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNM 318
            L EL +  N    +  G+F GL  L  L L  A +  +
Sbjct: 179 RLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATI 217

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 103/216 (47%), Gaps = 8/216 (3%)
Query: 102 QASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSL 161
           +    CP  C C+++   V C    L  +P ++  + + L L+ N I+ + +    +  L
Sbjct: 1   ETGTSCPAACSCSNQASRVICTRRELAEVPASIPVNTRYLNLQENSIQVIRT--DTFKHL 58
Query: 162 QHVD---LSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNF 218
           +H++   LS N +  I +  F     L  L+L  N+L++V  + F  L  L+ L LR N 
Sbjct: 59  RHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNP 118
Query: 219 LEDLPDRLFAPLSHLEELDLGQ-NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIY 277
           +E +P   F  +  L  LDLG+  R+  I +A FEGL  LR L L    L+ +  P+   
Sbjct: 119 IESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDI--PNLTA 176
Query: 278 LGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGA 313
           L  L EL +  N    +  G+F GL  L  L L  A
Sbjct: 177 LVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHA 212

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 67/132 (50%), Gaps = 4/132 (3%)
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
           L L  N +  +   TF  L+ L++L L  N +  +    F  L  L  L+L  NR++ + 
Sbjct: 40  LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVP 99
Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVG-LNVFTTLADGAFNGLGRLS 306
              FE L+ LR L+L +N + S+P+ +F  +  L  L +G L     +++ AF GL  L 
Sbjct: 100 TQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLR 159
Query: 307 ALDLRGAGLTNM 318
            L+L   G+ N+
Sbjct: 160 YLNL---GMCNL 168

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/182 (32%), Positives = 95/182 (52%), Gaps = 1/182 (0%)
Query: 111 CDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHN 169
           C CN+    V C+  +LD +P  +    ++L L+   + T+ D+  +  + L  ++L +N
Sbjct: 10  CTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN 69
Query: 170 QLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAP 229
           QL  +    F+   +L  L L +N+L+S+    F  L  L  L L GN L+ LP  +F  
Sbjct: 70  QLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR 129
Query: 230 LSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLN 289
           L+ L+EL L  N++  I    F+ LT L+ L L  NQL+SVP  +F  LG L  + +  N
Sbjct: 130 LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Query: 290 VF 291
            F
Sbjct: 190 QF 191

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 3/109 (2%)
Query: 210 KVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRS 269
           K ++ +G  L+ +P  + A     E+LDL    ++ +  A F GLT L  L LD NQL++
Sbjct: 17  KEVDCQGKSLDSVPSGIPA---DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT 73
Query: 270 VPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNM 318
           +    F  L  L  L +  N   +L  G F+ L +L  L L G  L ++
Sbjct: 74  LSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSL 122

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/182 (32%), Positives = 95/182 (52%), Gaps = 1/182 (0%)
Query: 111 CDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHN 169
           C CN+    V C+  +LD +P  +    ++L L+   + T+ D+  +  + L  ++L +N
Sbjct: 10  CTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN 69
Query: 170 QLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAP 229
           QL  +    F+   +L  L L +N+L+S+    F  L  L  L L GN L+ LP  +F  
Sbjct: 70  QLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR 129
Query: 230 LSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLN 289
           L+ L+EL L  N++  I    F+ LT L+ L L  NQL+SVP  +F  LG L  + +  N
Sbjct: 130 LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Query: 290 VF 291
            F
Sbjct: 190 QF 191

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 3/109 (2%)
Query: 210 KVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRS 269
           K ++ +G  L+ +P  + A     E+LDL    ++ +  A F GLT L  L LD NQL++
Sbjct: 17  KEVDCQGKSLDSVPSGIPA---DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT 73
Query: 270 VPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNM 318
           +    F  L  L  L +  N   +L  G F+ L +L  L L G  L ++
Sbjct: 74  LSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSL 122

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 96/205 (46%), Gaps = 1/205 (0%)
Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVD 165
           CPP C+C+ +   V C       +P  +    + L L  NRIKT++      +  L+ ++
Sbjct: 3   CPPRCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELE 62
Query: 166 LSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDR 225
           L+ N +  +    F     L  L L  N+L  +    F GL +L  L++  N +  L D 
Sbjct: 63  LNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDY 122
Query: 226 LFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELR 285
           +F  L +L+ L++G N +  I    F GL +L  L L+   L S+PT +  +L  L  LR
Sbjct: 123 MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLR 182
Query: 286 VGLNVFTTLADGAFNGLGRLSALDL 310
           +       + D +F  L RL  L++
Sbjct: 183 LRHLNINAIRDYSFKRLYRLKVLEI 207

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 78.6 bits (192), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 103/221 (46%), Gaps = 3/221 (1%)
Query: 107 CPPDCDCNDETLVVT-CKEANLDVIPITLNPSIQRLVLKYNRIKTVDSA-IQFYSSLQHV 164
           CP  C C +E  V T C +  L  +P+ +  + QR+ L  NRI  V +A  +   +L  +
Sbjct: 1   CPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTIL 60
Query: 165 DLSHNQLVNIPIRGFEPQEKLVELQLNHN-KLSSVNNKTFIGLKSLKVLNLRGNFLEDLP 223
            L  N L  I    F     L +L L+ N +L SV+  TF GL  L  L+L    L++L 
Sbjct: 61  WLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG 120
Query: 224 DRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAE 283
             LF  L+ L+ L L  N +  +    F  L  L  L+L  N++ SVP  +F  L  L  
Sbjct: 121 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 180
Query: 284 LRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMA 324
           L +  N    +   AF  LGRL  L L    L+ +   ++A
Sbjct: 181 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA 221

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 78.6 bits (192), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 103/221 (46%), Gaps = 3/221 (1%)
Query: 107 CPPDCDCNDETLVVT-CKEANLDVIPITLNPSIQRLVLKYNRIKTVDSA-IQFYSSLQHV 164
           CP  C C +E  V T C +  L  +P+ +  + QR+ L  NRI  V +A  +   +L  +
Sbjct: 2   CPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTIL 61
Query: 165 DLSHNQLVNIPIRGFEPQEKLVELQLNHN-KLSSVNNKTFIGLKSLKVLNLRGNFLEDLP 223
            L  N L  I    F     L +L L+ N +L SV+  TF GL  L  L+L    L++L 
Sbjct: 62  WLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG 121
Query: 224 DRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAE 283
             LF  L+ L+ L L  N +  +    F  L  L  L+L  N++ SVP  +F  L  L  
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181
Query: 284 LRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMA 324
           L +  N    +   AF  LGRL  L L    L+ +   ++A
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA 222

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/207 (33%), Positives = 95/207 (45%), Gaps = 3/207 (1%)
Query: 107 CPPDCDCNDETLVVT-CKEANLDVIPITLNPSIQRLVLKYNRIKTVDSA-IQFYSSLQHV 164
           CP  C C +E  V T C +  L  +P  +  S QR+ L  NRI  V +A  Q   +L  +
Sbjct: 1   CPGACVCYNEPKVTTSCPQQGLQAVPTGIPASSQRIFLHGNRISYVPAASFQSCRNLTIL 60
Query: 165 DLSHNQLVNIPIRGFEPQEKLVELQLNHN-KLSSVNNKTFIGLKSLKVLNLRGNFLEDLP 223
            L  N L  I    F     L +L L+ N +L  V+  TF GL  L  L+L    L++L 
Sbjct: 61  WLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELG 120
Query: 224 DRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAE 283
             LF  L+ L+ L L  N +  +    F  L  L  L+L  N++ SVP  +F  L  L  
Sbjct: 121 PGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDR 180
Query: 284 LRVGLNVFTTLADGAFNGLGRLSALDL 310
           L +  N    +   AF  LGRL  L L
Sbjct: 181 LLLHQNHVARVHPHAFRDLGRLMTLYL 207

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/146 (36%), Positives = 84/146 (57%), Gaps = 1/146 (0%)
Query: 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKL 195
           P+++ L L  N++  + SA++  ++L ++ L+ NQL ++P   F+    L EL L  N+L
Sbjct: 63  PNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121
Query: 196 SSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLT 255
            S+ +  F  L +L  LNL  N L+ LP  +F  L++L ELDL  N++  + +  F+ LT
Sbjct: 122 QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLT 181
Query: 256 ALRILYLDDNQLRSVPTPSFIYLGML 281
            L+ L L  NQL+SVP   F  L  L
Sbjct: 182 QLKDLRLYQNQLKSVPDGVFDRLTSL 207

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 2/135 (1%)
Query: 176 IRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEE 235
           ++G +    +  L L  NKL  ++      L +L  L L GN L+ LP+ +F  L++L+E
Sbjct: 56  VQGIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113
Query: 236 LDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA 295
           L L +N++  +    F+ LT L  L L  NQL+S+P   F  L  L EL +  N   +L 
Sbjct: 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP 173
Query: 296 DGAFNGLGRLSALDL 310
           +G F+ L +L  L L
Sbjct: 174 EGVFDKLTQLKDLRL 188

>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4 Length = 193

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 72/135 (53%), Gaps = 2/135 (1%)
Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDL 166
           CP +C C D   VV C    L V+P  +   +  L L  N+   V   +  Y  L  +DL
Sbjct: 4   CPTECTCLDT--VVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDL 61
Query: 167 SHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRL 226
           S+N++  +  + F    +L+ L L++N+L  +  +TF GLKSL++L+L GN +  +P+  
Sbjct: 62  SNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGA 121
Query: 227 FAPLSHLEELDLGQN 241
           F  LS L  L +G N
Sbjct: 122 FNDLSALSHLAIGAN 136

>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4 Length = 193

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Query: 212 LNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVP 271
           L L GN    +P  L +   HL  +DL  NRIS +    F  +T L  L L  N+LR +P
Sbjct: 36  LYLDGNQFTLVPKEL-SNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 272 TPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSAL 308
             +F  L  L  L +  N  + + +GAFN L  LS L
Sbjct: 95  PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHL 131

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 85/149 (57%), Gaps = 1/149 (0%)
Query: 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKL 195
           P+++ L L  N++  + SA++  ++L ++ L+ NQL ++P   F+    L EL L  N+L
Sbjct: 63  PNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121
Query: 196 SSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLT 255
            S+ +  F  L +L  L L  N L+ LP  +F  L++L  LDL  N++  + +  F+ LT
Sbjct: 122 QSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLT 181
Query: 256 ALRILYLDDNQLRSVPTPSFIYLGMLAEL 284
            L+ L L+DNQL+SVP   F  L  L  +
Sbjct: 182 QLKQLSLNDNQLKSVPDGVFDRLTSLTHI 210

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 2/135 (1%)
Query: 176 IRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEE 235
           ++G +    +  L L  NKL  ++      L +L  L L GN L+ LP+ +F  L++L+E
Sbjct: 56  VQGIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113
Query: 236 LDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA 295
           L L +N++  +    F+ LT L  LYL  NQL+S+P   F  L  L  L +  N   +L 
Sbjct: 114 LVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLP 173
Query: 296 DGAFNGLGRLSALDL 310
           +G F+ L +L  L L
Sbjct: 174 EGVFDKLTQLKQLSL 188

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 81/160 (50%), Gaps = 3/160 (1%)
Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAI-QFYSSLQHVD 165
           CP  C C+  T  V C       +P  +      L L+ N +K++ + +    +SL  + 
Sbjct: 1   CPSRCSCSGTT--VECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLY 58
Query: 166 LSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDR 225
           L  N+L ++P   F     L  L L+ N+L S+ N  F  L  LK L L  N L+ LPD 
Sbjct: 59  LGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDG 118
Query: 226 LFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDN 265
           +F  L+ L++L L QN++  +    F+ LT+L+ ++L DN
Sbjct: 119 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/119 (39%), Positives = 65/119 (54%)
Query: 163 HVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDL 222
           ++DL  N L ++P   F+    L +L L  NKL S+ N  F  L SL  LNL  N L+ L
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91
Query: 223 PDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGML 281
           P+ +F  L+ L+EL L  N++  +    F+ LT L+ L L  NQL+SVP   F  L  L
Sbjct: 92  PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 54/99 (54%)
Query: 212 LNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVP 271
           L+L  N L+ LP+ +F  L+ L +L LG N++  +    F  LT+L  L L  NQL+S+P
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 272 TPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDL 310
              F  L  L EL +  N   +L DG F+ L +L  L L
Sbjct: 93  NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRL 131

>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2 Length = 452

Iteration: 1
 Score = 75.1 bits (183), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 95/206 (46%), Gaps = 8/206 (3%)
Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVD 165
           CP  C C+++   V C    L  +P  +  + + L L  N I+ + +   +    L+ + 
Sbjct: 46  CPSVCSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQ 105
Query: 166 LSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDR 225
           L  N +  I +  F     L  L+L  N L+ + +  F  L  L+ L LR N +E +P  
Sbjct: 106 LGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSY 165
Query: 226 LFAPLSHLEELDLGQ-NRISRIDQACFEGLTALRILYLDDNQLRSVP--TPSFIYLGMLA 282
            F  +  L  LDLG+  ++  I +  FEGL  L+ L L    ++ +P  TP    L  L 
Sbjct: 166 AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTP----LVGLE 221
Query: 283 ELRVGLNVFTTLADGAFNGLGRLSAL 308
           EL +  N F  +  G+F+GL  L  L
Sbjct: 222 ELEMSGNHFPEIRPGSFHGLSSLKKL 247

>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2 Length = 452

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 1/132 (0%)
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
           L L  N +  +   TF  L  L+VL L  N +  +    F  L+ L  L+L  N ++ I 
Sbjct: 80  LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP 139
Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVG-LNVFTTLADGAFNGLGRLS 306
              FE L+ LR L+L +N + S+P+ +F  +  L  L +G L     +++GAF GL  L 
Sbjct: 140 SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLK 199
Query: 307 ALDLRGAGLTNM 318
            L+L    + +M
Sbjct: 200 YLNLGMCNIKDM 211

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 106/259 (40%), Gaps = 52/259 (20%)
Query: 103 ASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQ 162
           ++  CP  C C+++   V C   NL  +P  ++ + + L L  N+I+ +   +  +  L+
Sbjct: 31  SAQTCPSVCSCSNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIK--VNSFKHLR 88
Query: 163 HVD---LSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFL 219
           H++   LS N +  I I  F     L  L+L  N+L+++ N  F+ L  LK L LR N +
Sbjct: 89  HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI 148
Query: 220 EDLPDRLF-----------------------------------------------APLSH 232
           E +P   F                                                PL  
Sbjct: 149 ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIK 208
Query: 233 LEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFT 292
           L+ELDL  N +S I    F+GL  L+ L++  +Q++ +   +F  L  L E+ +  N  T
Sbjct: 209 LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268
Query: 293 TLADGAFNGLGRLSALDLR 311
            L    F  L  L  + L 
Sbjct: 269 LLPHDLFTPLHHLERIHLH 287

>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 87/189 (46%), Gaps = 25/189 (13%)
Query: 103 ASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQ 162
            S  CP  C C++   +V C+   L  IP  L  +I  + L+ N IK             
Sbjct: 1   GSLHCPAACTCSNN--IVDCRGKGLTEIPTNLPETITEIRLEQNTIKV------------ 46
Query: 163 HVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDL 222
                      IP   F P +KL  + L++N++S +    F GL+SL  L L GN + +L
Sbjct: 47  -----------IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL 95
Query: 223 PDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLA 282
           P  LF  L  L+ L L  N+I+ +    F+ L  L +L L DN+L+++   +F  L  + 
Sbjct: 96  PKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ 155
Query: 283 ELRVGLNVF 291
            + +  N F
Sbjct: 156 TMHLAQNPF 164

>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 220

Iteration: 1
 Score = 68.2 bits (165), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 87/189 (46%), Gaps = 25/189 (13%)
Query: 103 ASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQ 162
            S  CP  C C++   +V C+   L  IP  L  +I  + L+ N IK             
Sbjct: 1   GSLHCPAACTCSNN--IVDCRGKGLTEIPTNLPETITEIRLEQNTIKV------------ 46
Query: 163 HVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDL 222
                      IP   F P +KL  + L++N++S +    F GL+SL  L L GN + +L
Sbjct: 47  -----------IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL 95
Query: 223 PDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLA 282
           P  LF  L  L+ L L  N+I+ +    F+ L  L +L L DN+L+++   +F  L  + 
Sbjct: 96  PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ 155
Query: 283 ELRVGLNVF 291
            + +  N F
Sbjct: 156 TMHLAQNPF 164

>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B61 Length = 177

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 73/149 (48%), Gaps = 10/149 (6%)
Query: 186 VELQLNHNKLSSVNNKTFIGLKSLKV-LNLRGNFLEDLPDRLFAPLSHLEELDLGQNRIS 244
            E++ N   L+SV      G+ S    L L  N L+ LP  +F  L+ L +L L QN+I 
Sbjct: 10  TEIRCNSKGLTSVP----TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ 65
Query: 245 RIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGR 304
            +    F+ LT L ILYL +N+L+S+P   F  L  L EL +  N   ++ DG F+ L  
Sbjct: 66  SLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTS 125
Query: 305 LSALDLRGAGLTNMMGHSMALGDYL-HWI 332
           L  + L     TN    S    DYL  W+
Sbjct: 126 LQKIWLH----TNPWDCSCPRIDYLSRWL 150

>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 82/183 (44%), Gaps = 9/183 (4%)
Query: 103 ASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYS--S 160
            S  CP  C C  E   V C    L+ IP  +      L L  N    +++   F     
Sbjct: 1   GSLACPEKCRC--EGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQ 58
Query: 161 LQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLE 220
           L+ ++ S+N++ +I    FE    + E+ L  N+L +V +K F GL+SLK L LR N + 
Sbjct: 59  LRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT 118
Query: 221 DLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGM 280
            + +  F  LS +  L L  N+I+ +    F+ L +L  L L  N     P     YL  
Sbjct: 119 CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN-----PFNCNCYLAW 173
Query: 281 LAE 283
           L E
Sbjct: 174 LGE 176

>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 82/170 (48%), Gaps = 12/170 (7%)
Query: 164 VDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVN-NKTFIGLKSLKVLNLRGNFLEDL 222
           VD S+ +L  IP     PQ    EL+LN+N+ + +     F  L  L+ +N   N + D+
Sbjct: 16  VDCSNQKLNKIP--EHIPQ-YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI 72
Query: 223 PDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLA 282
            +  F   S + E+ L  NR+  +    F+GL +L+ L L  N++  V   SFI L  + 
Sbjct: 73  EEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVR 132
Query: 283 ELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHWI 332
            L +  N  TT+A GAF+ L  LS L        N++ +      YL W+
Sbjct: 133 LLSLYDNQITTVAPGAFDTLHSLSTL--------NLLANPFNCNCYLAWL 174

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 80/156 (51%), Gaps = 4/156 (2%)
Query: 137 SIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIP-IRGFEPQEKLVELQLNHNKL 195
           S++ L L +N + T+ S       L+H+D  H+ L  +     F     L+ L ++H   
Sbjct: 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433
Query: 196 SSVNNKTFIGLKSLKVLNLRGNFLED--LPDRLFAPLSHLEELDLGQNRISRIDQACFEG 253
               N  F GL SL+VL + GN  ++  LPD +F  L +L  LDL Q ++ ++    F  
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQLEQLSPTAFNS 492
Query: 254 LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLN 289
           L++L++L +  NQL+SVP   F  L  L ++ +  N
Sbjct: 493 LSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 1/124 (0%)
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
           L L+ N L  + + +F     L+VL+L    ++ + D  +  LSHL  L L  N I  + 
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA-DGAFNGLGRLS 306
              F GL++L+ L   +  L S+      +L  L EL V  N+  +      F+ L  L 
Sbjct: 93  LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152
Query: 307 ALDL 310
            LDL
Sbjct: 153 HLDL 156

>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 67/131 (51%)
Query: 159 SSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNF 218
           S ++  DLS +++  +    F     L +L L  N+++ +++  F GL  L  LNL  NF
Sbjct: 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF 334
Query: 219 LEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYL 278
           L  +  R+F  L  LE LDL  N I  +    F GL  L+ L LD NQL+SVP   F  L
Sbjct: 335 LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRL 394
Query: 279 GMLAELRVGLN 289
             L ++ +  N
Sbjct: 395 TSLQKIWLHTN 405

>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 90/229 (39%), Gaps = 71/229 (31%)
Query: 138 IQRLVLKYNRI-KTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLS 196
           ++ L L YN+I K  D A     +LQ ++LS+N L  +    F    K+  + L  N ++
Sbjct: 292 LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351
Query: 197 SVNNKTFIGLKSLKVLNLRGN------FLEDLPD--------------RLFAPLSHLEE- 235
            + ++TF  L+ L+ L+LR N      F+  +PD               L A L HL E 
Sbjct: 352 IIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSEN 411
Query: 236 -------------------LDLGQNRISRI--DQA------------------------- 249
                              L L QNR S    DQ                          
Sbjct: 412 RLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETEL 471
Query: 250 ---CFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA 295
               FEGL+ L++LYL+ N L S+P   F +L  L  L +  N  T L+
Sbjct: 472 CWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLS 520

>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 2/122 (1%)
Query: 199 NNKTFIGL--KSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTA 256
           +  TF GL   S++ L+L   F+  L  R+F  L  L+ L+L  N+I++I    F GL  
Sbjct: 256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDN 315
Query: 257 LRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT 316
           L++L L  N L  + + +F  L  +A + +  N    + D  F  L +L  LDLR   LT
Sbjct: 316 LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375
Query: 317 NM 318
            +
Sbjct: 376 TI 377

>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265

Iteration: 1
 Score = 64.7 bits (156), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 1/115 (0%)
Query: 161 LQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLE 220
           L  +DLSHNQL ++P+ G +    L  L ++ N+L+S+      GL  L+ L L+GN L+
Sbjct: 79  LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 221 DLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSF 275
            LP  L  P   LE+L L  N+++ +      GL  L  L L +N L ++P   F
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192

>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269

Iteration: 1
 Score = 64.7 bits (156), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 1/115 (0%)
Query: 161 LQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLE 220
           L  +DLSHNQL ++P+ G +    L  L ++ N+L+S+      GL  L+ L L+GN L+
Sbjct: 79  LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 221 DLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSF 275
            LP  L  P   LE+L L  N+++ +      GL  L  L L +N L ++P   F
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 81/164 (49%), Gaps = 6/164 (3%)
Query: 104 SAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYS--SL 161
           SA CP  C C+  T  V C+      +P  +  + Q L L  N+I  ++  + F S  +L
Sbjct: 10  SAACPSQCSCSGTT--VDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGV-FDSLINL 66
Query: 162 QHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLED 221
           + + L  NQL  +P+  F+   +L  L L  N+L+ + +  F  L  LK L +  N L +
Sbjct: 67  KELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE 126
Query: 222 LPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDN 265
           LP R    L+HL  L L QN++  I    F+ L++L   YL  N
Sbjct: 127 LP-RGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 74/157 (47%), Gaps = 4/157 (2%)
Query: 156 QFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLR 215
           Q   S   VD    +  ++P  G     ++  L L+ N+++ +    F  L +LK L L 
Sbjct: 16  QCSCSGTTVDCRSKRHASVPA-GIPTNAQI--LYLHDNQITKLEPGVFDSLINLKELYLG 72
Query: 216 GNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSF 275
            N L  LP  +F  L+ L  LDLG N+++ +  A F+ L  L+ L++  N+L  +P    
Sbjct: 73  SNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPR-GI 131
Query: 276 IYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG 312
             L  L  L +  N   ++  GAF+ L  L+   L G
Sbjct: 132 ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG 168

>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 77/185 (41%), Gaps = 8/185 (4%)
Query: 118 LVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVD-SAIQFYSSLQHVDLSHNQLVNIPI 176
           L V C +  L  +P  L      L L  N + T   + +  Y+ L  ++L   +L  + +
Sbjct: 13  LEVNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQV 72
Query: 177 RGFEPQEKLVELQLNHNKLSSVNNKTFIG--LKSLKVLNLRGNFLEDLPDRLFAPLSHLE 234
            G  P   L  L L+HN+L S+     +G  L +L VL++  N L  LP      L  L+
Sbjct: 73  DGTLP--VLGTLDLSHNQLQSL---PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 235 ELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTL 294
           EL L  N +  +          L  L L +NQL  +P      L  L  L +  N   T+
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 295 ADGAF 299
             G F
Sbjct: 188 PKGFF 192

>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290

Iteration: 1
 Score = 64.3 bits (155), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 1/115 (0%)
Query: 161 LQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLE 220
           L  +DLSHNQL ++P+ G +    L  L ++ N+L+S+      GL  L+ L L+GN L+
Sbjct: 79  LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 221 DLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSF 275
            LP  L  P   LE+L L  N+++ +      GL  L  L L +N L ++P   F
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192

>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Alpha-thrombin At 2.6a Length = 279

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 77/185 (41%), Gaps = 8/185 (4%)
Query: 118 LVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSA-IQFYSSLQHVDLSHNQLVNIPI 176
           L V C + +L  +P  L      L L  N + T   A +  Y+ L  ++L   +L  + +
Sbjct: 13  LEVNCDKRDLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQV 72
Query: 177 RGFEPQEKLVELQLNHNKLSSVNNKTFIG--LKSLKVLNLRGNFLEDLPDRLFAPLSHLE 234
            G  P   L  L L+HN+L S+     +G  L +L VL++  N L  LP      L  L+
Sbjct: 73  DGTLP--VLGTLDLSHNQLQSL---PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 235 ELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTL 294
           EL L  N +  +          L  L L +N L  +P      L  L  L +  N   T+
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 295 ADGAF 299
             G F
Sbjct: 188 PKGFF 192

>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet Receptor Glycoprotein Ib-alpha At 1.7 Angstrom Resolution Length = 290

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 77/185 (41%), Gaps = 8/185 (4%)
Query: 118 LVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVD-SAIQFYSSLQHVDLSHNQLVNIPI 176
           L V C + NL  +P  L      L L  N + T   + +  Y+ L  ++L   +L  + +
Sbjct: 13  LEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV 72
Query: 177 RGFEPQEKLVELQLNHNKLSSVNNKTFIG--LKSLKVLNLRGNFLEDLPDRLFAPLSHLE 234
            G  P   L  L L+HN+L S+     +G  L +L VL++  N L  LP      L  L+
Sbjct: 73  DGTLP--VLGTLDLSHNQLQSL---PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 235 ELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTL 294
           EL L  N +  +          L  L L +N L  +P      L  L  L +  N   T+
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 295 ADGAF 299
             G F
Sbjct: 188 PKGFF 192

>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b Length = 281

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 77/185 (41%), Gaps = 8/185 (4%)
Query: 118 LVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSA-IQFYSSLQHVDLSHNQLVNIPI 176
           L V C + NL  +P  L      L L  N + T   A +  Y+ L  ++L   +L  + +
Sbjct: 14  LEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQV 73
Query: 177 RGFEPQEKLVELQLNHNKLSSVNNKTFIG--LKSLKVLNLRGNFLEDLPDRLFAPLSHLE 234
            G  P   L  L L+HN+L S+     +G  L +L VL++  N L  LP      L  L+
Sbjct: 74  DGTLP--VLGTLDLSHNQLQSL---PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 128
Query: 235 ELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTL 294
           EL L  N +  +          L  L L +N L  +P      L  L  L +  N   T+
Sbjct: 129 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 188
Query: 295 ADGAF 299
             G F
Sbjct: 189 PKGFF 193

>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Human Alpha-thrombin Length = 290

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 77/185 (41%), Gaps = 8/185 (4%)
Query: 118 LVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVD-SAIQFYSSLQHVDLSHNQLVNIPI 176
           L V C + NL  +P  L      L L  N + T   + +  Y+ L  ++L   +L  + +
Sbjct: 13  LEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV 72
Query: 177 RGFEPQEKLVELQLNHNKLSSVNNKTFIG--LKSLKVLNLRGNFLEDLPDRLFAPLSHLE 234
            G  P   L  L L+HN+L S+     +G  L +L VL++  N L  LP      L  L+
Sbjct: 73  DGTLPV--LGTLDLSHNQLQSL---PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 235 ELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTL 294
           EL L  N +  +          L  L L +N L  +P      L  L  L +  N   T+
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 295 ADGAF 299
             G F
Sbjct: 188 PKGFF 192

>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib Interaction With Two Distinct Alpha-Thrombin Sites Length = 290

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 77/185 (41%), Gaps = 8/185 (4%)
Query: 118 LVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVD-SAIQFYSSLQHVDLSHNQLVNIPI 176
           L V C + NL  +P  L      L L  N + T   + +  Y+ L  ++L   +L  + +
Sbjct: 13  LEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV 72
Query: 177 RGFEPQEKLVELQLNHNKLSSVNNKTFIG--LKSLKVLNLRGNFLEDLPDRLFAPLSHLE 234
            G  P   L  L L+HN+L S+     +G  L +L VL++  N L  LP      L  L+
Sbjct: 73  DGTLPV--LGTLDLSHNQLQSL---PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 235 ELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTL 294
           EL L  N +  +          L  L L +N L  +P      L  L  L +  N   T+
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 295 ADGAF 299
             G F
Sbjct: 188 PKGFF 192

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 95/192 (49%), Gaps = 16/192 (8%)
Query: 135 NPSIQRLVLKYNRI-KTVDSAIQF--YSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLN 191
           N SIQ L L  N++  T +S      +++L  +DLS+N L ++    F     L  L L 
Sbjct: 221 NTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLE 280
Query: 192 HNKLSSVNNKTFIGLKSLKVLNLRGNFLE---------DLPDRLFAPLSHLEELDLGQNR 242
           +N +  ++ ++F GL +L+ L+L+  F +         ++ D  F  L +LE L++  N 
Sbjct: 281 YNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNN 340
Query: 243 ISRIDQACFEGLTALRILYLDD--NQLRSVPTPSFIYLGM--LAELRVGLNVFTTLADGA 298
           I       F GL +L+ L L      L+++   +F+ L    L  L +  N  + +A+G 
Sbjct: 341 IPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGT 400
Query: 299 FNGLGRLSALDL 310
           F+ LG+L  LDL
Sbjct: 401 FSWLGQLRILDL 412

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 51/109 (46%)
Query: 208 SLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQL 267
           ++ VLNL  N L  LP   F   S L  LD G N IS+++    + L  L++L L  N+L
Sbjct: 26  NITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNEL 85
Query: 268 RSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT 316
             +   +F++   L EL +  N    +    F     L  LDL   GL+
Sbjct: 86  SQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLS 134

>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At 2.6 Angstrom Resolution Length = 288

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 77/185 (41%), Gaps = 8/185 (4%)
Query: 118 LVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVD-SAIQFYSSLQHVDLSHNQLVNIPI 176
           L V C + +L  +P  L      L L  N + T   + +  Y+ L  ++L   +L  + +
Sbjct: 13  LEVNCDKRDLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQV 72
Query: 177 RGFEPQEKLVELQLNHNKLSSVNNKTFIG--LKSLKVLNLRGNFLEDLPDRLFAPLSHLE 234
            G  P   L  L L+HN+L S+     +G  L +L VL++  N L  LP      L  L+
Sbjct: 73  DGTLP--VLGTLDLSHNQLQSL---PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 235 ELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTL 294
           EL L  N +  +          L  L L +N L  +P      L  L  L +  N   T+
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 295 ADGAF 299
             G F
Sbjct: 188 PKGFF 192

>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit Length = 192

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 63/138 (45%), Gaps = 6/138 (4%)
Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHV-- 164
           CP  C C  E   V C    L  IP  +      L+L  N +  + S+   +  L H+  
Sbjct: 2   CPAMCHC--EGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRI-SSDGLFGRLPHLVK 58
Query: 165 -DLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLP 223
            +L  NQL  I    FE    + ELQL  NK+  ++NK F+GL  LK LNL  N +  + 
Sbjct: 59  LELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVM 118
Query: 224 DRLFAPLSHLEELDLGQN 241
              F  L+ L  L+L  N
Sbjct: 119 PGSFEHLNSLTSLNLASN 136

>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit Length = 192

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Query: 186 VELQLNHNKLSSVNNKTFIG-LKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRIS 244
            EL LN N+L  +++    G L  L  L L+ N L  +    F   SH++EL LG+N+I 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 245 RIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTT 293
            I    F GL  L+ L L DNQ+  V   SF +L  L  L +  N F  
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140

>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein Amigo-1 Length = 361

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 28/167 (16%)
Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDL 166
           CP +C C     +++C +  L  +P +L PS                    Y++L  +DL
Sbjct: 12  CPANCLCASN--ILSCSKQQLPNVPQSL-PS--------------------YTAL--LDL 46
Query: 167 SHNQLVNIPIRGFEPQE--KLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPD 224
           SHN L  +    + P     L  L L+HN L+ ++++ F+ + +L+ L+L  N L  L +
Sbjct: 47  SHNNLSRLRAE-WTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDE 105
Query: 225 RLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVP 271
            LF+ L  LE L L  N I  +D+  FE +  L+ LYL  NQ+   P
Sbjct: 106 FLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP 152

>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein Amigo-1 Length = 361

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 63/137 (45%), Gaps = 8/137 (5%)
Query: 188 LQLNHNKLSSVNNK-TFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRI 246
           L L+HN LS +  + T   L +L  L L  N L  +    F P+ +L  LDL  N +  +
Sbjct: 44  LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL 103
Query: 247 DQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTT-----LADGAFNG 301
           D+  F  L AL +L L +N +  V   +F  +  L +L +  N  +      + DG  N 
Sbjct: 104 DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDG--NK 161
Query: 302 LGRLSALDLRGAGLTNM 318
           L +L  LDL    L  +
Sbjct: 162 LPKLMLLDLSSNKLKKL 178

>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin, The Archetypal Small Leucine-Rich Repeat Proteoglycan Length = 330

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 102/224 (45%), Gaps = 17/224 (7%)
Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTV-DSAIQFYSSLQHVD 165
           CP  C C+    VV C +  L+ +P  L P    L L+ N+I  + D   +   +L  + 
Sbjct: 25  CPFRCQCH--LRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLI 82
Query: 166 LSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDR 225
           L +N++  I    F P  KL  L L+ N+L  +  K     K+L+ L +  N +  +   
Sbjct: 83  LINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM---PKTLQELRVHENEITKVRKS 139
Query: 226 LFAPLSHLEELDLGQN--RISRIDQACFEGLTALRILYLDDNQLRSVPT---PSFIYLGM 280
           +F  L+ +  ++LG N  + S I+   F+G+  L  + + D  + ++P    PS      
Sbjct: 140 VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS------ 193
Query: 281 LAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMA 324
           L EL +  N  T +   +  GL  L+ L L    ++ +   S+A
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237

>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1 Length = 329

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 102/224 (45%), Gaps = 17/224 (7%)
Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTV-DSAIQFYSSLQHVD 165
           CP  C C+    VV C +  L+ +P  L P    L L+ N+I  + D   +   +L  + 
Sbjct: 25  CPFRCQCH--LRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLI 82
Query: 166 LSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDR 225
           L +N++  I    F P  KL  L L+ N+L  +  K     K+L+ L +  N +  +   
Sbjct: 83  LINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM---PKTLQELRVHENEITKVRKS 139
Query: 226 LFAPLSHLEELDLGQN--RISRIDQACFEGLTALRILYLDDNQLRSVPT---PSFIYLGM 280
           +F  L+ +  ++LG N  + S I+   F+G+  L  + + D  + ++P    PS      
Sbjct: 140 VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS------ 193
Query: 281 LAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMA 324
           L EL +  N  T +   +  GL  L+ L L    ++ +   S+A
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 82/175 (46%), Gaps = 10/175 (5%)
Query: 122 CKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIP-IRGFE 180
           C +++   I      S++ L L +N + T+ S       L+H+D  H+ L  +     F 
Sbjct: 389 CSQSDFGTI------SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 442
Query: 181 PQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLED--LPDRLFAPLSHLEELDL 238
               L+ L ++H       N  F GL SL+VL + GN  ++  LPD +F  L +L  LDL
Sbjct: 443 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDL 501
Query: 239 GQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTT 293
            Q ++ ++    F  L++L++L +  N   S+ T  +  L  L  L   LN   T
Sbjct: 502 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 556

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 1/124 (0%)
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
           L L+ N L  + + +F     L+VL+L    ++ + D  +  LSHL  L L  N I  + 
Sbjct: 57  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 116
Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA-DGAFNGLGRLS 306
              F GL++L+ L   +  L S+      +L  L EL V  N+  +      F+ L  L 
Sbjct: 117 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 176
Query: 307 ALDL 310
            LDL
Sbjct: 177 HLDL 180

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 77/160 (48%), Gaps = 4/160 (2%)
Query: 137 SIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIP-IRGFEPQEKLVELQLNHNKL 195
           S++ L L +N + T+ S       L+H+D  H+ L  +     F     L+ L ++H   
Sbjct: 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433
Query: 196 SSVNNKTFIGLKSLKVLNLRGNFLED--LPDRLFAPLSHLEELDLGQNRISRIDQACFEG 253
               N  F GL SL+VL + GN  ++  LPD +F  L +L  LDL Q ++ ++    F  
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQLEQLSPTAFNS 492
Query: 254 LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTT 293
           L++L++L +  N   S+ T  +  L  L  L   LN   T
Sbjct: 493 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 532

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 1/124 (0%)
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
           L L+ N L  + + +F     L+VL+L    ++ + D  +  LSHL  L L  N I  + 
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA-DGAFNGLGRLS 306
              F GL++L+ L   +  L S+      +L  L EL V  N+  +      F+ L  L 
Sbjct: 93  LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152
Query: 307 ALDL 310
            LDL
Sbjct: 153 HLDL 156

>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 81/209 (38%), Gaps = 53/209 (25%)
Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDL 166
           CP  C C+     + C    L  +P  +  S  RL L+ N++++                
Sbjct: 1   CPSRCSCSGTE--IRCNSKGLTSVPTGIPSSATRLELESNKLQS---------------- 42
Query: 167 SHNQLVNIPIRGFEPQEKLVELQLNHNKLS--SVNNKTFIGLKSLKVLNLRGNFLEDLPD 224
                  +P   F+   +L +L L+ N LS     +++  G  SLK L+L  N +  +  
Sbjct: 43  -------LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS 95
Query: 225 RLFAPLSHLEELDLGQNRISRIDQACFEGLTALR-ILYLDDNQLRSVPTPSFIYLGMLAE 283
             F  L  LE LD   + + ++ +  F    +LR ++YLD +   +              
Sbjct: 96  N-FLGLEQLEHLDFQHSNLKQMSE--FSVFLSLRNLIYLDISHTHT-------------- 138
Query: 284 LRVGLNVFTTLADGAFNGLGRLSALDLRG 312
            RV  N       G FNGL  L  L + G
Sbjct: 139 -RVAFN-------GIFNGLSSLEVLKMAG 159

>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein Length = 332

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 104/283 (36%), Gaps = 91/283 (32%)
Query: 104 SAFCPPDCDCNDETLVVTCKEANLDVIPITLNPS------------------------IQ 139
           SA CP  C C+    VV C +  L  +P  ++P                         + 
Sbjct: 24  SAMCPFGCHCH--LRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLY 81
Query: 140 RLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQ--EKLVELQLNHNKLS 196
            LVL  N+I  + + A      LQ + +S N LV IP     P     LVEL+++ N++ 
Sbjct: 82  ALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIP-----PNLPSSLVELRIHDNRIR 136
Query: 197 SVNNKTFIGLKSLKVLNLRGNFLE-----------------------------DLPDRL- 226
            V    F GL+++  + + GN LE                             DLP+ L 
Sbjct: 137 KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLN 196
Query: 227 ----------------FAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSV 270
                               S L  L LG N+I  I+      L  LR L+LD+N+L  V
Sbjct: 197 ELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV 256
Query: 271 PTP-------SFIYLGMLAELRVGLNVFTTLADGA----FNGL 302
           P           +YL      +VG+N F  +  G     +NG+
Sbjct: 257 PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGI 299

>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein Length = 332

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 79/163 (48%), Gaps = 9/163 (5%)
Query: 158 YSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGN 217
           +  L+ V  S   L  +P +   P   L++LQ  +N +S +    F GL+ L  L L  N
Sbjct: 32  HCHLRVVQCSDLGLKAVP-KEISPDTTLLDLQ--NNDISELRKDDFKGLQHLYALVLVNN 88
Query: 218 FLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIY 277
            +  + ++ F+PL  L++L + +N +  I       L  LRI    DN++R VP   F  
Sbjct: 89  KISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRI---HDNRIRKVPKGVFSG 145
Query: 278 LGMLAELRVGLNVF--TTLADGAFNGLGRLSALDLRGAGLTNM 318
           L  +  + +G N    +    GAF+GL +L+ L +  A LT +
Sbjct: 146 LRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGI 187

>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish Tlr5 Length = 407

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 2/100 (2%)
Query: 192 HNKLSSVNNKTFIGLKS--LKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQA 249
           H      +N TF GL++  +K  +L  + +  L   +F+  + LE+L L QN I++ID  
Sbjct: 258 HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN 317
Query: 250 CFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLN 289
            F GLT L+ L LD NQL+SVP   F  L  L ++ +  N
Sbjct: 318 AFWGLTHLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 357

>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure Length = 680

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 91/206 (44%), Gaps = 3/206 (1%)
Query: 113 CNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSA-IQFYSSLQHVDLSHNQL 171
           C     V  C    L  +P  L  +I  L L +N+++ + +A    YS L  +D+  N +
Sbjct: 2   CTVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61
Query: 172 VNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLS 231
             +     +    L  L L HN+LS +++KTF    +L  L+L  N ++ + +  F    
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121
Query: 232 HLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLG--MLAELRVGLN 289
           +L  LDL  N +S         L  L+ L L +N+++++ +          L +L +  N
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181
Query: 290 VFTTLADGAFNGLGRLSALDLRGAGL 315
                + G F+ +GRL  L L    L
Sbjct: 182 QIKEFSPGCFHAIGRLFGLFLNNVQL 207

>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure Length = 680

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 52/109 (47%)
Query: 208 SLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQL 267
           ++ VLNL  N L  LP   F   S L  LD+G N IS+++    + L  L++L L  N+L
Sbjct: 26  NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85
Query: 268 RSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT 316
             +   +F +   L EL +  N    + +  F     L  LDL   GL+
Sbjct: 86  SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 134

>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With Three Fabs (Form1) Length = 694

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 95/216 (43%), Gaps = 5/216 (2%)
Query: 103 ASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSA-IQFYSSL 161
            SA     C  + E  V  C    L  +P  L  +I  L L +N+++ + +A    YS L
Sbjct: 4   GSASSTTKCTVSHE--VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQL 61
Query: 162 QHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLED 221
             +D+  N +  +     +    L  L L HN+LS +++KTF    +L  L+L  N ++ 
Sbjct: 62  TSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK 121
Query: 222 LPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLG-- 279
           + +  F    +L  LDL  N +S         L  L+ L L +N+++++ +         
Sbjct: 122 IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANS 181
Query: 280 MLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGL 315
            L +L +  N     + G F+ +GRL  L L    L
Sbjct: 182 SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 217

>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With Three Fabs (Form1) Length = 694

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 10/165 (6%)
Query: 164 VDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKT--FIGLKSLKVLNLRGNFLED 221
           + LS+N+ + +    F     L  L L    L +V++    F  L++L +L+L  N + +
Sbjct: 445 IYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 504
Query: 222 LPDRLFAPLSHLEELDLGQNRISRIDQAC--------FEGLTALRILYLDDNQLRSVPTP 273
           + D +   L  LE LDL  N ++R+ +           +GL+ L IL L+ N    +P  
Sbjct: 505 INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVE 564
Query: 274 SFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNM 318
            F  L  L  + +GLN   TL    FN    L +L+L+   +T++
Sbjct: 565 VFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV 609

>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand Binding Domain Length = 705

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 91/206 (44%), Gaps = 3/206 (1%)
Query: 113 CNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSA-IQFYSSLQHVDLSHNQL 171
           C     V  C    L  +P  L  +I  L L +N+++ + +A    YS L  +D+  N +
Sbjct: 7   CTVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 66
Query: 172 VNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLS 231
             +     +    L  L L HN+LS +++KTF    +L  L+L  N ++ + +  F    
Sbjct: 67  SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 126
Query: 232 HLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLG--MLAELRVGLN 289
           +L  LDL  N +S         L  L+ L L +N+++++ +          L +L +  N
Sbjct: 127 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 186
Query: 290 VFTTLADGAFNGLGRLSALDLRGAGL 315
                + G F+ +GRL  L L    L
Sbjct: 187 QIKEFSPGCFHAIGRLFGLFLNNVQL 212

>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand Binding Domain Length = 705

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 52/109 (47%)
Query: 208 SLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQL 267
           ++ VLNL  N L  LP   F   S L  LD+G N IS+++    + L  L++L L  N+L
Sbjct: 31  NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 90
Query: 268 RSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT 316
             +   +F +   L EL +  N    + +  F     L  LDL   GL+
Sbjct: 91  SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 139

>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The Immunodominant Glycoprotein Of Bacillus Anthracis Spores Length = 179

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 3/115 (2%)
Query: 104 SAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAI-QFYSSLQ 162
           SA CP  C C+  T  V C+E +L  +P  +  + Q L L  N+I  ++  +    + L 
Sbjct: 10  SAACPSQCSCSGTT--VNCQERSLASVPAGIPTTTQVLHLYINQITKLEPGVFDSLTQLT 67
Query: 163 HVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGN 217
           +++L+ NQL  +P+  F+   KL  L L+ N+L S+    F  LKSL  + L  N
Sbjct: 68  YLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNN 122

>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant In Complex With A Protein Antigen Length = 170

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 3/112 (2%)
Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAI-QFYSSLQHVD 165
           CP  C C+  T  V C   +L  +P  +  + Q L L  NRI  ++  +    + L  +D
Sbjct: 3   CPSQCSCSGTT--VDCSGKSLASVPTGIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLD 60
Query: 166 LSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGN 217
           L +NQL  +P   F+   +L +L LN N+L S+    F  L+SL  + L  N
Sbjct: 61  LDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNN 112

>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant In Complex With A Protein Antigen Length = 170

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 42/77 (54%)
Query: 208 SLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQL 267
           + +VL L  N +  L   +F  L+ L  LDL  N+++ +    F+ LT L  L L+DNQL
Sbjct: 31  TTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90
Query: 268 RSVPTPSFIYLGMLAEL 284
           +S+P  +F  L  L  +
Sbjct: 91  KSIPRGAFDNLRSLTHI 107

>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In Complex With A Protein Antigen Length = 178

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 105 AFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAI-QFYSSLQH 163
           + CP  C C+  T  V C   +L  +P  +  + Q L L  N+I  ++  +    + L  
Sbjct: 9   SACPSQCSCSGTT--VDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTR 66
Query: 164 VDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSL 209
           +DL +NQL  +P   F+   +L +L LN N+L S+    F  LKSL
Sbjct: 67  LDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSL 112

>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In Complex With A Protein Antigen Length = 178

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 42/77 (54%)
Query: 208 SLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQL 267
           + +VL L  N +  L   +F  L+ L  LDL  N+++ +    F+ LT L  L L+DNQL
Sbjct: 39  TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 98
Query: 268 RSVPTPSFIYLGMLAEL 284
           +S+P  +F  L  L  +
Sbjct: 99  KSIPRGAFDNLKSLTHI 115

>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Length = 170

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 3/112 (2%)
Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAI-QFYSSLQHVD 165
           CP  C C+  T  V C   +L  +P  +  + Q L L  N+I  ++  +    + L  +D
Sbjct: 3   CPSQCSCSGTT--VDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLD 60
Query: 166 LSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGN 217
           L +NQL  +P   F+   +L +L LN N+L S+    F  LKSL  + L  N
Sbjct: 61  LDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112

>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Length = 170

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 42/77 (54%)
Query: 208 SLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQL 267
           + +VL L  N +  L   +F  L+ L  LDL  N+++ +    F+ LT L  L L+DNQL
Sbjct: 31  TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90
Query: 268 RSVPTPSFIYLGMLAEL 284
           +S+P  +F  L  L  +
Sbjct: 91  KSIPRGAFDNLKSLTHI 107

>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex Length = 599

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 2/159 (1%)
Query: 137 SIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIP-IRGFEPQEKLVELQLNHNKL 195
           S++ L L +N    + +       LQH+D  H+ L  +     F   EKL+ L +++   
Sbjct: 372 SLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 431
Query: 196 SSVNNKTFIGLKSLKVLNLRGN-FLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGL 254
               +  F+GL SL  L + GN F ++    +FA  ++L  LDL + ++ +I    F+ L
Sbjct: 432 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL 491
Query: 255 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTT 293
             L++L +  N L  + +  +  L  L+ L    N   T
Sbjct: 492 HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET 530

>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 580

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 98/208 (47%), Gaps = 9/208 (4%)
Query: 115 DETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSA-IQFYSSLQHVDLSHNQLVN 173
           D + V   +  +   IP  L  +++ L L +N+I  +    ++  ++LQ + L  +++  
Sbjct: 31  DASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT 90
Query: 174 IPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLP-DRLFAPLSH 232
           I    F     L  L L+ N LSS+++  F  L SLK LNL GN  + L    LF  L++
Sbjct: 91  IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 150
Query: 233 LEELDLGQ----NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGL 288
           L+ L +G     + I RID   F GLT+L  L +    LR+  + S   +  +  L + L
Sbjct: 151 LQTLRIGNVETFSEIRRID---FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 207
Query: 289 NVFTTLADGAFNGLGRLSALDLRGAGLT 316
           +    L +   + L  +  L+LR   L 
Sbjct: 208 SESAFLLEIFADILSSVRYLELRDTNLA 235

>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX Length = 606

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 2/159 (1%)
Query: 137 SIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIP-IRGFEPQEKLVELQLNHNKL 195
           S++ L L +N    + +       LQH+D  H+ L  +     F   EKL+ L +++   
Sbjct: 377 SLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436
Query: 196 SSVNNKTFIGLKSLKVLNLRGN-FLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGL 254
               +  F+GL SL  L + GN F ++    +FA  ++L  LDL + ++ +I    F+ L
Sbjct: 437 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL 496
Query: 255 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTT 293
             L++L +  N L  + +  +  L  L+ L    N   T
Sbjct: 497 HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET 535

>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By Binding Of A Tri-acylated Lipopeptide Length = 549

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 98/208 (47%), Gaps = 9/208 (4%)
Query: 115 DETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSA-IQFYSSLQHVDLSHNQLVN 173
           D + V   +  +   IP  L  +++ L L +N+I  +    ++  ++LQ + L  +++  
Sbjct: 5   DASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT 64
Query: 174 IPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLP-DRLFAPLSH 232
           I    F     L  L L+ N LSS+++  F  L SLK LNL GN  + L    LF  L++
Sbjct: 65  IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124
Query: 233 LEELDLGQ----NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGL 288
           L+ L +G     + I RID   F GLT+L  L +    LR+  + S   +  +  L + L
Sbjct: 125 LQTLRIGNVETFSEIRRID---FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181
Query: 289 NVFTTLADGAFNGLGRLSALDLRGAGLT 316
           +    L +   + L  +  L+LR   L 
Sbjct: 182 SESAFLLEIFADILSSVRYLELRDTNLA 209

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 77/146 (52%), Gaps = 15/146 (10%)
Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
           D+ P+    +++RL +  N++  + S +   ++L+ +  ++NQ+ +I   G      L E
Sbjct: 169 DLKPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGI--LTNLDE 225
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLS---HLEELDLGQNRIS 244
           L LN N+L  +   T   L +L  L+L  N + +L     APLS    L EL LG N+IS
Sbjct: 226 LSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL-----APLSGLTKLTELKLGANQIS 278
Query: 245 RIDQACFEGLTALRILYLDDNQLRSV 270
            I  +   GLTAL  L L++NQL  +
Sbjct: 279 NI--SPLAGLTALTNLELNENQLEDI 302

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 77/146 (52%), Gaps = 15/146 (10%)
Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
           D+ P+    +++RL +  N++  + S +   ++L+ +  ++NQ+ +I   G      L E
Sbjct: 168 DLKPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGI--LTNLDE 224
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLS---HLEELDLGQNRIS 244
           L LN N+L  +   T   L +L  L+L  N + +L     APLS    L EL LG N+IS
Sbjct: 225 LSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL-----APLSGLTKLTELKLGANQIS 277
Query: 245 RIDQACFEGLTALRILYLDDNQLRSV 270
            I  +   GLTAL  L L++NQL  +
Sbjct: 278 NI--SPLAGLTALTNLELNENQLEDI 301

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 77/146 (52%), Gaps = 15/146 (10%)
Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
           D+ P+    +++RL +  N++  + S +   ++L+ +  ++NQ+ +I   G      L E
Sbjct: 164 DLKPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGI--LTNLDE 220
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLS---HLEELDLGQNRIS 244
           L LN N+L  +   T   L +L  L+L  N + +L     APLS    L EL LG N+IS
Sbjct: 221 LSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL-----APLSGLTKLTELKLGANQIS 273
Query: 245 RIDQACFEGLTALRILYLDDNQLRSV 270
            I  +   GLTAL  L L++NQL  +
Sbjct: 274 NI--SPLAGLTALTNLELNENQLEDI 297

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 77/146 (52%), Gaps = 15/146 (10%)
Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
           D+ P+    +++RL +  N++  + S +   ++L+ +  ++NQ+ +I   G      L E
Sbjct: 165 DLKPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGI--LTNLDE 221
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLS---HLEELDLGQNRIS 244
           L LN N+L  +   T   L +L  L+L  N + +L     APLS    L EL LG N+IS
Sbjct: 222 LSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL-----APLSGLTKLTELKLGANQIS 274
Query: 245 RIDQACFEGLTALRILYLDDNQLRSV 270
            I  +   GLTAL  L L++NQL  +
Sbjct: 275 NI--SPLAGLTALTNLELNENQLEDI 298

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 77/146 (52%), Gaps = 15/146 (10%)
Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
           D+ P+    +++RL +  N++  + S +   ++L+ +  ++NQ+ +I   G      L E
Sbjct: 164 DLKPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGI--LTNLDE 220
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLS---HLEELDLGQNRIS 244
           L LN N+L  +   T   L +L  L+L  N + +L     APLS    L EL LG N+IS
Sbjct: 221 LSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL-----APLSGLTKLTELKLGANQIS 273
Query: 245 RIDQACFEGLTALRILYLDDNQLRSV 270
            I  +   GLTAL  L L++NQL  +
Sbjct: 274 NI--SPLAGLTALTNLELNENQLEDI 297

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 77/146 (52%), Gaps = 15/146 (10%)
Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
           D+ P+    +++RL +  N++  + S +   ++L+ +  ++NQ+ +I   G      L E
Sbjct: 165 DLKPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGI--LTNLDE 221
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLS---HLEELDLGQNRIS 244
           L LN N+L  +   T   L +L  L+L  N + +L     APLS    L EL LG N+IS
Sbjct: 222 LSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL-----APLSGLTKLTELKLGANQIS 274
Query: 245 RIDQACFEGLTALRILYLDDNQLRSV 270
            I  +   GLTAL  L L++NQL  +
Sbjct: 275 NI--SPLAGLTALTNLELNENQLEDI 298

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 77/146 (52%), Gaps = 15/146 (10%)
Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
           D+ P+    +++RL +  N++  + S +   ++L+ +  ++NQ+ +I   G      L E
Sbjct: 165 DLKPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGI--LTNLDE 221
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLS---HLEELDLGQNRIS 244
           L LN N+L  +   T   L +L  L+L  N + +L     APLS    L EL LG N+IS
Sbjct: 222 LSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL-----APLSGLTKLTELKLGANQIS 274
Query: 245 RIDQACFEGLTALRILYLDDNQLRSV 270
            I  +   GLTAL  L L++NQL  +
Sbjct: 275 NI--SPLAGLTALTNLELNENQLEDI 298

>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila Toll Receptor Length = 279

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 62/125 (49%), Gaps = 1/125 (0%)
Query: 167 SHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRL 226
           S N  +NI  +  +    L   +    +L+ +       +++L  L LR N +E++P  L
Sbjct: 107 SDNLGMNITRQHLDRLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRAN-IEEMPSHL 165
Query: 227 FAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRV 286
           F  L +LE ++ G N++ ++ +  F  +  L+ L L  NQL+SVP   F  L  L ++ +
Sbjct: 166 FDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWL 225
Query: 287 GLNVF 291
             N +
Sbjct: 226 HTNPW 230

>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran Complex Length = 279

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 81/185 (43%), Gaps = 33/185 (17%)
Query: 136 PSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK 194
           P +Q L L    I+T+ D A Q  S L  + L+ N + ++ +  F     L +L      
Sbjct: 54  PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 113
Query: 195 LSSVNNKTFIGLKSLKVLNLRGNFLED--LPDRLFAPLSHLEELDLGQNRISRI------ 246
           L+S+ N     LK+LK LN+  N ++   LP+  F+ L++LE LDL  N+I  I      
Sbjct: 114 LASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQSIYCTDLR 172
Query: 247 ----------------------DQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAEL 284
                                     F+ +  L+ L LD NQL+SVP   F  L  L ++
Sbjct: 173 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVPDGIFDRLTSLQKI 231
Query: 285 RVGLN 289
            +  N
Sbjct: 232 WLHTN 236

>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran Complex Length = 279

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 1/124 (0%)
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
           L L+ N L  + + +F     L+VL+L    ++ + D  +  LSHL  L L  N I  + 
Sbjct: 35  LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA-DGAFNGLGRLS 306
              F GL++L+ L   +  L S+      +L  L EL V  N+  +      F+ L  L 
Sbjct: 95  LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 154
Query: 307 ALDL 310
            LDL
Sbjct: 155 HLDL 158

>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w Length = 278

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 81/185 (43%), Gaps = 33/185 (17%)
Query: 136 PSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK 194
           P +Q L L    I+T+ D A Q  S L  + L+ N + ++ +  F     L +L      
Sbjct: 53  PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 112
Query: 195 LSSVNNKTFIGLKSLKVLNLRGNFLED--LPDRLFAPLSHLEELDLGQNRISRI------ 246
           L+S+ N     LK+LK LN+  N ++   LP+  F+ L++LE LDL  N+I  I      
Sbjct: 113 LASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQSIYCTDLR 171
Query: 247 ----------------------DQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAEL 284
                                     F+ +  L+ L LD NQL+SVP   F  L  L ++
Sbjct: 172 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVPDGIFDRLTSLQKI 230
Query: 285 RVGLN 289
            +  N
Sbjct: 231 WLHTN 235

>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w Length = 278

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 1/124 (0%)
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
           L L+ N L  + + +F     L+VL+L    ++ + D  +  LSHL  L L  N I  + 
Sbjct: 34  LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA-DGAFNGLGRLS 306
              F GL++L+ L   +  L S+      +L  L EL V  N+  +      F+ L  L 
Sbjct: 94  LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 153
Query: 307 ALDL 310
            LDL
Sbjct: 154 HLDL 157

>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 276

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 1/124 (0%)
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
           L L+ N L  + + +F     L+VL+L    ++ + D  +  LSHL  L L  N I  + 
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA-DGAFNGLGRLS 306
              F GL++L+ L   +  L S+      +L  L EL V  N+  +      F+ L  L 
Sbjct: 93  LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152
Query: 307 ALDL 310
            LDL
Sbjct: 153 HLDL 156

>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e Length = 278

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 1/124 (0%)
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
           L L+ N L  + + +F     L+VL+L    ++ + D  +  LSHL  L L  N I  + 
Sbjct: 34  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA-DGAFNGLGRLS 306
              F GL++L+ L   +  L S+      +L  L EL V  N+  +      F+ L  L 
Sbjct: 94  LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 153
Query: 307 ALDL 310
            LDL
Sbjct: 154 HLDL 157

>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l Length = 279

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 85/188 (45%), Gaps = 39/188 (20%)
Query: 136 PSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPI---RGFEPQEKLVELQLN 191
           P +Q L L    I+T+ D A Q  S L  + L+ N + ++ +    G    +KLV L+ N
Sbjct: 54  PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETN 113
Query: 192 HNKLSSVNNKTFIGLKSLKVLNLRGNFLED--LPDRLFAPLSHLEELDLGQNRISRI--- 246
              L+S+ N     LK+LK LN+  N ++   LP+  F+ L++LE LDL  N+I  I   
Sbjct: 114 ---LASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQSIYCT 169
Query: 247 -------------------------DQACFEGLTALRILYLDDNQLRSVPTPSFIYLGML 281
                                        F+ +  L+ L LD NQL+SVP   F  L  L
Sbjct: 170 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVPDGIFDRLTSL 228
Query: 282 AELRVGLN 289
            ++ +  N
Sbjct: 229 QKIWLHTN 236

>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l Length = 279

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 1/124 (0%)
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
           L L+ N L  + + +F     L+VL+L    ++ + D  +  LSHL  L L  N I  + 
Sbjct: 35  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA-DGAFNGLGRLS 306
              F GL++L+ L   +  L S+      +L  L EL V  N+  +      F+ L  L 
Sbjct: 95  LGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 154
Query: 307 ALDL 310
            LDL
Sbjct: 155 HLDL 158

>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 353

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 64/129 (49%), Gaps = 2/129 (1%)
Query: 160 SLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFL 219
           +++ +DLS+N++  I     +    L  L L  N ++++   +F  L SL+ L+L  N+L
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112
Query: 220 EDLPDRLFAPLSHLEELDLGQNRISRI-DQACFEGLTALRILYLDD-NQLRSVPTPSFIY 277
            +L    F PLS L  L+L  N    + + + F  LT L+IL + + +    +    F  
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 172
Query: 278 LGMLAELRV 286
           L  L EL +
Sbjct: 173 LTFLEELEI 181

>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 353

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
Query: 233 LEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFT 292
           ++ LDL  NRI+ I  +  +    L+ L L  N + ++   SF  LG L  L +  N  +
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 293 TLADGAFNGLGRLSALDLRGA-----GLTNMMGH 321
            L+   F  L  L+ L+L G      G T++  H
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSH 147

>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 549

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 71/157 (45%), Gaps = 24/157 (15%)
Query: 160 SLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFL 219
           +++ +DLS+N++  I     +    L  L L  N ++++   +F  L SL+ L+L  N+L
Sbjct: 27  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 86
Query: 220 EDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLG 279
            +L    F PLS L  L+L  N    +      G T+L                 F +L 
Sbjct: 87  SNLSSSWFKPLSSLTFLNLLGNPYKTL------GETSL-----------------FSHLT 123
Query: 280 MLAELRVG-LNVFTTLADGAFNGLGRLSALDLRGAGL 315
            L  LRVG ++ FT +    F GL  L  L++  + L
Sbjct: 124 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 160

>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 549

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
Query: 233 LEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFT 292
           ++ LDL  NRI+ I  +  +    L+ L L  N + ++   SF  LG L  L +  N  +
Sbjct: 28  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
Query: 293 TLADGAFNGLGRLSALDLRGA-----GLTNMMGH 321
            L+   F  L  L+ L+L G      G T++  H
Sbjct: 88  NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSH 121

>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor 2913 Ectodomain Length = 174

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 58/138 (42%), Gaps = 25/138 (18%)
Query: 104 SAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQH 163
           SA CP  C C D+TLV  C+   L  +P  +    QRL L  N+I  ++  +        
Sbjct: 3   SAGCPSQCSC-DQTLV-NCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGV-------- 52
Query: 164 VDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLP 223
                + LVN           L +L  N NKL+++    F  L  L  L+L  N L+ +P
Sbjct: 53  ----FDHLVN-----------LQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97
Query: 224 DRLFAPLSHLEELDLGQN 241
              F  L  L  + L  N
Sbjct: 98  RGAFDNLKSLTHIYLYNN 115

>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor 2913 Ectodomain Length = 174

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 43/77 (55%)
Query: 234 EELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTT 293
           + L L  N+I++++   F+ L  L+ LY + N+L ++PT  F  L  L +L +  N   +
Sbjct: 36  QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95
Query: 294 LADGAFNGLGRLSALDL 310
           +  GAF+ L  L+ + L
Sbjct: 96  IPRGAFDNLKSLTHIYL 112

>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria Monocytogenes Length = 263

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 65/126 (51%), Gaps = 30/126 (23%)
Query: 153 SAIQFYSSLQHVDLSHNQLVNI-PIRGFEPQEKLVELQLNHNKLSSVNN----------- 200
           + +QF+++L+ + LSHNQ+ ++ P++      KL EL +N N+L ++N            
Sbjct: 57  AGMQFFTNLKELHLSHNQISDLSPLKDL---TKLEELSVNRNRLKNLNGIPSACLSRLFL 113
Query: 201 --------KTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFE 252
                    + I LK+L++L++R N L+ +   +   LS LE LDL  N I+        
Sbjct: 114 DNNELRDTDSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNTG----- 166
Query: 253 GLTALR 258
           GLT L+
Sbjct: 167 GLTRLK 172

>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria Monocytogenes Length = 263

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 58/116 (50%), Gaps = 15/116 (12%)
Query: 208 SLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID---QACFEGLTALRILYLDD 264
           +LK L+L  N + DL       L+ LEEL + +NR+  ++    AC      L  L+LD+
Sbjct: 64  NLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSAC------LSRLFLDN 115
Query: 265 NQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMG 320
           N+LR   T S I+L  L  L +  N   ++    F  L +L  LDL G  +TN  G
Sbjct: 116 NELRD--TDSLIHLKNLEILSIRNNKLKSIVMLGF--LSKLEVLDLHGNEITNTGG 167

>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain Length = 390

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 51/112 (45%)
Query: 204 IGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLD 263
           I L + K++  + + +  LP  L      +E L+L   +I  ID   F     ++ LY+ 
Sbjct: 42  ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMG 101
Query: 264 DNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGL 315
            N +R +P   F  + +L  L +  N  ++L  G F+   +L+ L +    L
Sbjct: 102 FNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 153

>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex Length = 612

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 60/135 (44%), Gaps = 5/135 (3%)
Query: 138 IQRLVLKYNR-IKTVDSAIQFYSSLQHVDLSHNQL-VNIPIRGFEPQEKLVELQLNHNKL 195
           +Q L L YN  +   D A +    L+ +D++   L V  P   F+    L  L L+H  L
Sbjct: 377 LQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLL 436
Query: 196 SSVNNKTFIGLKSLKVLNLRGNFLED---LPDRLFAPLSHLEELDLGQNRISRIDQACFE 252
            + N     GL+ L+ LNL+GN  +D       L   +  LE L L    +  IDQ  F 
Sbjct: 437 DTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFH 496
Query: 253 GLTALRILYLDDNQL 267
           GL  +  L L  N L
Sbjct: 497 GLRNVNHLDLSHNSL 511

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	332
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-61
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-39
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-35
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-32
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-52
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-30
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-49
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-20
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-48
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-32
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-26
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-46
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-32
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-26
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-45
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-21
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-44
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-23
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-44
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-33
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-42
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-33
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-30
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-30
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-30
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-29
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-27
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-26
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-42
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-34
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-29
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-26
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-25
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-24
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-41
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-26
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-41
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-33
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-31
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-26
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-25
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-24
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-40
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-34
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-26
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-17
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-39
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-24
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-39
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-28
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-25
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-23
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-21
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-39
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-32
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-31
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-25
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-38
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-26
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-36
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-36
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-30
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-23
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-22
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-36
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-31
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-30
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-24
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-34
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-34
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-31
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-28
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-28
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-25
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-33
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-30
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-30
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-26
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-32
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-27
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-25
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-24
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-24
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-23
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-21
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-32
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-30
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-29
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-29
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-29
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-28
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-27
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-16
3m19_A	251	Variable lymphocyte receptor A diversity region; a	8e-32
3m19_A	251	Variable lymphocyte receptor A diversity region; a	9e-24
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-15
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-30
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-24
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-26
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-25
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-23
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-27
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-27
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-21
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-26
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-23
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-14
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-09
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-25
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	8e-21
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-24
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-20
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-23
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-23
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-23
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-23
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-23
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-22
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-22
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-17
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-23
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-17
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-22
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-21
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-20
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-20
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-20
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-20
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-19
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-20
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-20
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-20
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-20
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-19
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-17
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-18
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-18
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-17
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-15
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-10
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	7e-18
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-16
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	6e-14
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-17
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-15
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-14
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-11
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-10
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-14
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-13
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-13
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-13
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-13
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-11
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	5e-10
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	1e-09
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	1e-08
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	4e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	3e-11
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	9e-10
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-08
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	4e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-05
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	3e-05
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	2e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-04

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  203 bits (517), Expect = 1e-61
 Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 1/207 (0%)

Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVD 165
           CPP C+C+ +   V C       +P  +    + L L  NRIKT++      +  L+ ++
Sbjct: 3   CPPRCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELE 62

Query: 166 LSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDR 225
           L+ N +  +    F     L  L L  N+L  +    F GL +L  L++  N +  L D 
Sbjct: 63  LNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDY 122

Query: 226 LFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELR 285
           +F  L +L+ L++G N +  I    F GL +L  L L+   L S+PT +  +L  L  LR
Sbjct: 123 MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLR 182

Query: 286 VGLNVFTTLADGAFNGLGRLSALDLRG 312
           +       + D +F  L RL  L++  
Sbjct: 183 LRHLNINAIRDYSFKRLYRLKVLEISH 209

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  142 bits (359), Expect = 9e-39
 Identities = 47/184 (25%), Positives = 78/184 (42%), Gaps = 3/184 (1%)

Query: 136 PSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK 194
            ++ +L +  N+I  + D   Q   +L+ +++  N LV I  R F     L +L L    
Sbjct: 104 SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN 163

Query: 195 LSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDL-GQNRISRIDQACFEG 253
           L+S+  +    L  L VL LR   +  + D  F  L  L+ L++     +  +   C  G
Sbjct: 164 LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG 223

Query: 254 LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGA 313
           L  L  L +    L +VP  +  +L  L  L +  N  +T+     + L RL  + L G 
Sbjct: 224 LN-LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG 282

Query: 314 GLTN 317
            L  
Sbjct: 283 QLAV 286

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  133 bits (336), Expect = 2e-35
 Identities = 44/178 (24%), Positives = 75/178 (42%), Gaps = 1/178 (0%)

Query: 136 PSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK 194
            S+++L L+   + ++ + A+     L  + L H  +  I    F+   +L  L+++H  
Sbjct: 152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211

Query: 195 LSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGL 254
                    +   +L  L++    L  +P      L +L  L+L  N IS I+ +    L
Sbjct: 212 YLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL 271

Query: 255 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG 312
             L+ + L   QL  V   +F  L  L  L V  N  TTL +  F+ +G L  L L  
Sbjct: 272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  123 bits (311), Expect = 4e-32
 Identities = 36/155 (23%), Positives = 68/155 (43%), Gaps = 1/155 (0%)

Query: 136 PSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK 194
             +  L L++  I  + D + +    L+ +++SH   ++           L  L + H  
Sbjct: 176 HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN 235

Query: 195 LSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGL 254
           L++V       L  L+ LNL  N +  +   +   L  L+E+ L   +++ ++   F GL
Sbjct: 236 LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGL 295

Query: 255 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLN 289
             LR+L +  NQL ++    F  +G L  L +  N
Sbjct: 296 NYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  112 bits (283), Expect = 3e-28
 Identities = 28/134 (20%), Positives = 58/134 (43%), Gaps = 1/134 (0%)

Query: 136 PSIQRLVLKYNRIKTVDSAIQFY-SSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK 194
             ++ L + +       +    Y  +L  + ++H  L  +P         L  L L++N 
Sbjct: 200 YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP 259

Query: 195 LSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGL 254
           +S++       L  L+ + L G  L  +    F  L++L  L++  N+++ ++++ F  +
Sbjct: 260 ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSV 319

Query: 255 TALRILYLDDNQLR 268
             L  L LD N L 
Sbjct: 320 GNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 59.0 bits (143), Expect = 7e-10
 Identities = 25/110 (22%), Positives = 38/110 (34%), Gaps = 27/110 (24%)

Query: 208 SLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQL 267
             + +         +P+ +    +    LDLG+NRI  ++Q  F     L  L L++N +
Sbjct: 12  QDRAVLCHRKRFVAVPEGIP---TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV 68

Query: 268 RSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN 317
            +V                          GAFN L  L  L LR   L  
Sbjct: 69  SAVE------------------------PGAFNNLFNLRTLGLRSNRLKL 94

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  174 bits (442), Expect = 1e-52
 Identities = 67/214 (31%), Positives = 99/214 (46%), Gaps = 3/214 (1%)

Query: 107 CPPDCDCNDET-LVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTV-DSAIQFYSSLQHV 164
           CP  C C +E  +  +C +  L  +P+ +  + QR+ L  NRI  V  ++ +   +L  +
Sbjct: 2   CPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTIL 61

Query: 165 DLSHNQLVNIPIRGFEPQEKLVELQLNHN-KLSSVNNKTFIGLKSLKVLNLRGNFLEDLP 223
            L  N L  I    F     L +L L+ N +L SV+  TF GL  L  L+L    L++L 
Sbjct: 62  WLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG 121

Query: 224 DRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAE 283
             LF  L+ L+ L L  N +  +    F  L  L  L+L  N++ SVP  +F  L  L  
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181

Query: 284 LRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN 317
           L +  N    +   AF  LGRL  L L    L+ 
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  114 bits (288), Expect = 6e-30
 Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 3/135 (2%)

Query: 136 PSIQRLVLKYNRIKTVDSAIQFY--SSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN 193
             +  L L    ++ +   + F   ++LQ++ L  N L  +P   F     L  L L+ N
Sbjct: 105 GRLHTLHLDRCGLQELGPGL-FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 163

Query: 194 KLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEG 253
           ++SSV  + F GL SL  L L  N +  +    F  L  L  L L  N +S +       
Sbjct: 164 RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP 223

Query: 254 LTALRILYLDDNQLR 268
           L AL+ L L+DN   
Sbjct: 224 LRALQYLRLNDNPWV 238

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  167 bits (424), Expect = 3e-49
 Identities = 61/235 (25%), Positives = 108/235 (45%), Gaps = 5/235 (2%)

Query: 86  TMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKY 145
           T+W + V   ++ L  +  +       C+    +      +L+ IP  L  +++ L L  
Sbjct: 4   TLWMVWVLGVIISLS-KEESSNQASLSCDRNG-ICKGSSGSLNSIPSGLTEAVKSLDLSN 61

Query: 146 NRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFI 204
           NRI  + +S +Q   +LQ + L+ N +  I    F     L  L L++N LS++++  F 
Sbjct: 62  NRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFK 121

Query: 205 GLKSLKVLNLRGNFLEDLPDR-LFAPLSHLEELDLGQN-RISRIDQACFEGLTALRILYL 262
            L SL  LNL GN  + L +  LF+ L+ L+ L +G     ++I +  F GLT L  L +
Sbjct: 122 PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI 181

Query: 263 DDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN 317
           D + L+S    S   +  ++ L + +     L +   +    +  L+LR   L  
Sbjct: 182 DASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT 236

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 90.6 bits (225), Expect = 1e-20
 Identities = 30/212 (14%), Positives = 59/212 (27%), Gaps = 60/212 (28%)

Query: 136 PSIQRLVLKYNRIKTVDSAIQFY---------------------------SSLQHVDLSH 168
            S+  L L  N  KT+     F                            + L+ +++  
Sbjct: 124 SSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183

Query: 169 NQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPD---- 224
           + L +   +  +  + +  L L+  +   +         S++ L LR   L+        
Sbjct: 184 SDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS 243

Query: 225 ----RLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGM 280
                          + +    + ++       ++ L  L    NQL+SVP         
Sbjct: 244 TGETNSLIKKFTFRNVKITDESLFQV-MKLLNQISGLLELEFSRNQLKSVP--------- 293

Query: 281 LAELRVGLNVFTTLADGAFNGLGRLSALDLRG 312
                          DG F+ L  L  + L  
Sbjct: 294 ---------------DGIFDRLTSLQKIWLHT 310

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 80.5 bits (199), Expect = 3e-17
 Identities = 21/139 (15%), Positives = 59/139 (42%), Gaps = 10/139 (7%)

Query: 136 PSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK 194
             ++ L +  + +++    +++   ++ H+ L   Q + +     +    +  L+L    
Sbjct: 174 TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD 233

Query: 195 LSSVN--------NKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRI 246
           L + +          + I   + + + +    L  +  +L   +S L EL+  +N++  +
Sbjct: 234 LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM-KLLNQISGLLELEFSRNQLKSV 292

Query: 247 DQACFEGLTALRILYLDDN 265
               F+ LT+L+ ++L  N
Sbjct: 293 PDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 12/60 (20%), Positives = 26/60 (43%)

Query: 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKL 195
            + + + +    +  V   +   S L  ++ S NQL ++P   F+    L ++ L+ N  
Sbjct: 254 FTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  167 bits (424), Expect = 2e-48
 Identities = 63/259 (24%), Positives = 102/259 (39%), Gaps = 28/259 (10%)

Query: 85  ITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLK 144
           +T    ++  A+          CP  C C+++   V C    L  +P  +  + + L L 
Sbjct: 24  LTAQVWILCAAIAAAASAGPQNCPSVCSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLM 83

Query: 145 YNRIKTVDS-------------------------AIQFYSSLQHVDLSHNQLVNIPIRGF 179
            N I+ + +                         A    +SL  ++L  N L  IP   F
Sbjct: 84  ENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAF 143

Query: 180 EPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNL-RGNFLEDLPDRLFAPLSHLEELDL 238
           E   KL EL L +N + S+ +  F  + SL  L+L     LE + +  F  L +L+ L+L
Sbjct: 144 EYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNL 203

Query: 239 GQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGA 298
           G   I  +       L  L  L +  N    +   SF  L  L +L V  +  + +   A
Sbjct: 204 GMCNIKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNA 261

Query: 299 FNGLGRLSALDLRGAGLTN 317
           F+GL  L  L+L    L++
Sbjct: 262 FDGLASLVELNLAHNNLSS 280

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  124 bits (313), Expect = 2e-32
 Identities = 44/156 (28%), Positives = 70/156 (44%), Gaps = 4/156 (2%)

Query: 136 PSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSH-NQLVNIPIRGFEPQEKLVELQLNHN 193
             ++ L L+ N I+++   A     SL  +DL    +L  I    FE    L  L L   
Sbjct: 147 SKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC 206

Query: 194 KLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEG 253
            +  +       L  L+ L + GN   ++    F  LS L++L +  +++S I++  F+G
Sbjct: 207 NIKDMP--NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDG 264

Query: 254 LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLN 289
           L +L  L L  N L S+P   F  L  L EL +  N
Sbjct: 265 LASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  106 bits (267), Expect = 4e-26
 Identities = 35/135 (25%), Positives = 65/135 (48%), Gaps = 4/135 (2%)

Query: 136 PSIQRLVL-KYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN 193
           PS+ RL L +  +++ + + A +   +L++++L    + ++P     P   L EL+++ N
Sbjct: 171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP--NLTPLVGLEELEMSGN 228

Query: 194 KLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEG 253
               +   +F GL SLK L +  + +  +    F  L+ L EL+L  N +S +    F  
Sbjct: 229 HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288

Query: 254 LTALRILYLDDNQLR 268
           L  L  L+L  N   
Sbjct: 289 LRYLVELHLHHNPWN 303

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  162 bits (411), Expect = 2e-46
 Identities = 65/263 (24%), Positives = 110/263 (41%), Gaps = 34/263 (12%)

Query: 87  MWSLLVTTALLLLVH------QASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQR 140
           M +LL+ + L +L+        ++  CP  C C+++   V C   NL  +P  ++ + + 
Sbjct: 9   MPALLLVSLLSVLLMGCVAETGSAQTCPSVCSCSNQFSKVICVRKNLREVPDGISTNTRL 68

Query: 141 LVLKYNR------------------------IKTVDS-AIQFYSSLQHVDLSHNQLVNIP 175
           L L  N+                        I+T++  A    ++L  ++L  N+L  IP
Sbjct: 69  LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP 128

Query: 176 IRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNL-RGNFLEDLPDRLFAPLSHLE 234
              F    KL EL L +N + S+ +  F  + SL+ L+L     L  + +  F  LS+L 
Sbjct: 129 NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLR 188

Query: 235 ELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTL 294
            L+L    +  I       L  L  L L  N L ++   SF  L  L +L +  +    +
Sbjct: 189 YLNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI 246

Query: 295 ADGAFNGLGRLSALDLRGAGLTN 317
              AF+ L  L  ++L    LT 
Sbjct: 247 ERNAFDNLQSLVEINLAHNNLTL 269

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  123 bits (310), Expect = 5e-32
 Identities = 43/156 (27%), Positives = 68/156 (43%), Gaps = 4/156 (2%)

Query: 136 PSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSH-NQLVNIPIRGFEPQEKLVELQLNHN 193
             ++ L L+ N I+++   A     SL+ +DL    +L  I    FE    L  L L   
Sbjct: 136 SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC 195

Query: 194 KLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEG 253
            L  +       L  L  L+L GN L  +    F  L HL++L + Q++I  I++  F+ 
Sbjct: 196 NLREIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN 253

Query: 254 LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLN 289
           L +L  + L  N L  +P   F  L  L  + +  N
Sbjct: 254 LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  105 bits (265), Expect = 7e-26
 Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 6/136 (4%)

Query: 136 PSIQRLVL-KYNRIKTVDSAIQFY--SSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNH 192
           PS++RL L +  R+  +     F   S+L++++L+   L  IP     P  KL EL L+ 
Sbjct: 160 PSLRRLDLGELKRLSYISEGA-FEGLSNLRYLNLAMCNLREIP--NLTPLIKLDELDLSG 216

Query: 193 NKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFE 252
           N LS++   +F GL  L+ L +  + ++ +    F  L  L E++L  N ++ +    F 
Sbjct: 217 NHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT 276

Query: 253 GLTALRILYLDDNQLR 268
            L  L  ++L  N   
Sbjct: 277 PLHHLERIHLHHNPWN 292

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  157 bits (398), Expect = 2e-45
 Identities = 51/197 (25%), Positives = 88/197 (44%), Gaps = 7/197 (3%)

Query: 98  LLVHQASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQF 157
           L   ++   CP +C C      ++C +  L  +P +L      L L +N +  + +    
Sbjct: 3   LASGRSVVSCPANCLCASNI--LSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTP 60

Query: 158 Y--SSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLR 215
              ++L  + LSHN L  I    F P   L  L L+ N L +++   F  L++L+VL L 
Sbjct: 61  TRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120

Query: 216 GNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEG---LTALRILYLDDNQLRSVPT 272
            N +  +    F  ++ L++L L QN+ISR      +    L  L +L L  N+L+ +P 
Sbjct: 121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL 180

Query: 273 PSFIYLGMLAELRVGLN 289
                L    +  + L+
Sbjct: 181 TDLQKLPAWVKNGLYLH 197

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 91.1 bits (226), Expect = 6e-21
 Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 1/111 (0%)

Query: 208 SLKVLNLRGNFLEDL-PDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQ 266
              +L+L  N L  L  +     L++L  L L  N ++ I    F  +  LR L L  N 
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99

Query: 267 LRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN 317
           L ++    F  L  L  L +  N    +   AF  + +L  L L    ++ 
Sbjct: 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR 150

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  152 bits (385), Expect = 2e-44
 Identities = 64/207 (30%), Positives = 104/207 (50%), Gaps = 1/207 (0%)

Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVD 165
               C CN+    V C    L  IP  +    ++L L+ N++ ++ S A    + L+ + 
Sbjct: 8   DGGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLY 67

Query: 166 LSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDR 225
           L+ N+L  +P   F+  + L  L +  NKL ++    F  L +L  L L  N L+ LP R
Sbjct: 68  LNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPR 127

Query: 226 LFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELR 285
           +F  L+ L  L LG N +  + +  F+ LT+L+ L L +NQL+ VP  +F  L  L  L+
Sbjct: 128 VFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLK 187

Query: 286 VGLNVFTTLADGAFNGLGRLSALDLRG 312
           +  N    + +GAF+ L +L  L L+ 
Sbjct: 188 LDNNQLKRVPEGAFDSLEKLKMLQLQE 214

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 94.7 bits (236), Expect = 9e-23
 Identities = 40/128 (31%), Positives = 68/128 (53%), Gaps = 1/128 (0%)

Query: 139 QRLVLKYNRIKTVDSAIQFY-SSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSS 197
           + L +  N+++ +   +     +L  + L  NQL ++P R F+   KL  L L +N+L S
Sbjct: 88  ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS 147

Query: 198 VNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTAL 257
           +    F  L SLK L L  N L+ +P+  F  L+ L+ L L  N++ R+ +  F+ L  L
Sbjct: 148 LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL 207

Query: 258 RILYLDDN 265
           ++L L +N
Sbjct: 208 KMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 68.1 bits (167), Expect = 3e-13
 Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 3/108 (2%)

Query: 209 LKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLR 268
              ++     L  +P  + A     ++LDL  N++S +    F  LT LR+LYL+DN+L+
Sbjct: 18  KNSVDCSSKKLTAIPSNIPA---DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ 74

Query: 269 SVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT 316
           ++P   F  L  L  L V  N    L  G F+ L  L+ L L    L 
Sbjct: 75  TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK 122

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  152 bits (386), Expect = 3e-44
 Identities = 54/240 (22%), Positives = 89/240 (37%), Gaps = 32/240 (13%)

Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSA------------ 154
           CP  C C+     + C    L  +P  +  S  RL L+ N+++++               
Sbjct: 1   CPSRCSCSGTE--IRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLS 58

Query: 155 -----IQFYS----------SLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVN 199
                + F            SL+++DLS N ++ +    F   E+L  L   H+ L  ++
Sbjct: 59  LSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLKQMS 117

Query: 200 NK-TFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNR-ISRIDQACFEGLTAL 257
               F+ L++L  L++         + +F  LS LE L +  N          F  L  L
Sbjct: 118 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 177

Query: 258 RILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN 317
             L L   QL  +   +F  L  L  L +  N F +L    +  L  L  LD     +  
Sbjct: 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 237

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  123 bits (311), Expect = 3e-33
 Identities = 35/158 (22%), Positives = 65/158 (41%), Gaps = 4/158 (2%)

Query: 136 PSIQRLVLKYNRIKTVDSAIQFYS--SLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN 193
             ++ L  +++ +K +     F S  +L ++D+SH          F     L  L++  N
Sbjct: 101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 160

Query: 194 K-LSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFE 252
               +     F  L++L  L+L    LE L    F  LS L+ L++  N    +D   ++
Sbjct: 161 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 220

Query: 253 GLTALRILYLDDNQLRSVPTPSFIYL-GMLAELRVGLN 289
            L +L++L    N + +       +    LA L +  N
Sbjct: 221 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  100 bits (251), Expect = 1e-24
 Identities = 32/137 (23%), Positives = 55/137 (40%), Gaps = 5/137 (3%)

Query: 136 PSIQRLVLKYNRIKTVDSAIQFY--SSLQHVDLSHNQ-LVNIPIRGFEPQEKLVELQLNH 192
            ++  L + +   +   + I F   SSL+ + ++ N    N     F     L  L L+ 
Sbjct: 126 RNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184

Query: 193 NKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFE 252
            +L  ++   F  L SL+VLN+  N    L    +  L+ L+ LD   N I    +   +
Sbjct: 185 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244

Query: 253 GL-TALRILYLDDNQLR 268
              ++L  L L  N   
Sbjct: 245 HFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 68.5 bits (168), Expect = 2e-13
 Identities = 28/113 (24%), Positives = 43/113 (38%), Gaps = 6/113 (5%)

Query: 208 SLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQL 267
           S   +      L  +P  +    S    L+L  N++  +    F+ LT L  L L  N L
Sbjct: 8   SGTEIRCNSKGLTSVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64

Query: 268 --RSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNM 318
             +   + S      L  L +  N   T+    F GL +L  LD + + L  M
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQM 116

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  154 bits (391), Expect = 1e-42
 Identities = 49/209 (23%), Positives = 77/209 (36%), Gaps = 4/209 (1%)

Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVD 165
               C   +      C+   L+ IP TL  S + L   +N + T+ +       +L  +D
Sbjct: 4   SDQKCIEKEVNKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLD 63

Query: 166 LSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDR 225
           L+  Q+  I    F+ Q +L  L L  N L  +      G K+LK L      +  +   
Sbjct: 64  LTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFI 123

Query: 226 LFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELR 285
                  LE L LG N IS I          L++L   +N +  +       L     L 
Sbjct: 124 PLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLS 183

Query: 286 VGL--NVFTTLADGAFNGLGRLSALDLRG 312
           + L  N    +  GAF+      +L+  G
Sbjct: 184 LNLNGNDIAGIEPGAFDSA-VFQSLNFGG 211

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  127 bits (322), Expect = 4e-33
 Identities = 46/182 (25%), Positives = 78/182 (42%), Gaps = 6/182 (3%)

Query: 136 PSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRG-FEPQEKLVELQLNHN 193
             +Q L L YN   ++ + A +    L+ +DL+  +L     +  F+    L  L L+H+
Sbjct: 376 SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435

Query: 194 KLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRL---FAPLSHLEELDLGQNRISRIDQAC 250
            L   + + F GL +L+ LNL+GN       +       L  LE L L    +S IDQ  
Sbjct: 436 LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA 495

Query: 251 FEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDL 310
           F  L  +  + L  N+L S    +  +L  +  L +  N  + +       L +   ++L
Sbjct: 496 FTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINL 554

Query: 311 RG 312
           R 
Sbjct: 555 RQ 556

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  120 bits (304), Expect = 1e-30
 Identities = 49/189 (25%), Positives = 90/189 (47%), Gaps = 8/189 (4%)

Query: 136 PSIQRLVLKYNRIKTVD-SAIQFY--SSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNH 192
            +++ L L ++ I+T D   +Q    S LQ ++LS+N+ +++    F+   +L  L L  
Sbjct: 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF 409

Query: 193 NKLSSVNNKT-FIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQAC- 250
            +L   + ++ F  L  LKVLNL  + L+   ++LF  L  L+ L+L  N   + +    
Sbjct: 410 TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKT 469

Query: 251 --FEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSAL 308
              + L  L IL L    L S+   +F  L M+  + +  N  T+ +  A + L  +  L
Sbjct: 470 NSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-L 528

Query: 309 DLRGAGLTN 317
           +L    ++ 
Sbjct: 529 NLASNHISI 537

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  120 bits (302), Expect = 2e-30
 Identities = 42/181 (23%), Positives = 76/181 (41%), Gaps = 4/181 (2%)

Query: 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKL 195
             +Q L L    +  + S +   S+L+ + LS N+  N+          L  L +  N  
Sbjct: 278 SGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337

Query: 196 S-SVNNKTFIGLKSLKVLNLRGNFLEDLP--DRLFAPLSHLEELDLGQNRISRIDQACFE 252
              +       L++L+ L+L  + +E     +     LSHL+ L+L  N    +    F+
Sbjct: 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK 397

Query: 253 GLTALRILYLDDNQLRSVPTPS-FIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLR 311
               L +L L   +L+     S F  L +L  L +  ++    ++  F+GL  L  L+L+
Sbjct: 398 ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQ 457

Query: 312 G 312
           G
Sbjct: 458 G 458

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  118 bits (299), Expect = 5e-30
 Identities = 45/193 (23%), Positives = 69/193 (35%), Gaps = 7/193 (3%)

Query: 136 PSIQRLVLKYNRIKTVDSAI---QFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNH 192
            S+     +    + +  A+       S++ ++L  +   NI    F     L EL L  
Sbjct: 228 QSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTA 287

Query: 193 NKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRIS-RIDQACF 251
             LS + +   +GL +LK L L  N  E+L     +    L  L +  N     +   C 
Sbjct: 288 THLSELPS-GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL 346

Query: 252 EGLTALRILYLDDNQLRSVP--TPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALD 309
           E L  LR L L  + + +          L  L  L +  N   +L   AF    +L  LD
Sbjct: 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406

Query: 310 LRGAGLTNMMGHS 322
           L    L      S
Sbjct: 407 LAFTRLKVKDAQS 419

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  117 bits (295), Expect = 2e-29
 Identities = 51/190 (26%), Positives = 79/190 (41%), Gaps = 8/190 (4%)

Query: 136 PSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQL-VNIPIRGFEPQEKLVELQLNHN 193
            ++++LVL  N+ + +   +   + SL H+ +  N   + +     E  E L EL L+H+
Sbjct: 301 STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360

Query: 194 KLSSV--NNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID-QAC 250
            + +    N     L  L+ LNL  N    L    F     LE LDL   R+   D Q+ 
Sbjct: 361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420

Query: 251 FEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTL---ADGAFNGLGRLSA 307
           F+ L  L++L L  + L       F  L  L  L +  N F         +   LGRL  
Sbjct: 421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480

Query: 308 LDLRGAGLTN 317
           L L    L++
Sbjct: 481 LVLSFCDLSS 490

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  112 bits (281), Expect = 1e-27
 Identities = 39/183 (21%), Positives = 68/183 (37%), Gaps = 6/183 (3%)

Query: 135 NPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRG--FEPQEKLVELQLNH 192
             +   L L  N I  ++      +  Q ++    Q + +  +G      + L       
Sbjct: 178 QATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFED 237

Query: 193 NKLSSVNNKTFIGLK--SLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQAC 250
                ++   F GL   S++ +NL+ ++  ++    F   S L+ELDL    +S +    
Sbjct: 238 MDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSG- 296

Query: 251 FEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLN-VFTTLADGAFNGLGRLSALD 309
             GL+ L+ L L  N+  ++   S      L  L +  N     L  G    L  L  LD
Sbjct: 297 LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356

Query: 310 LRG 312
           L  
Sbjct: 357 LSH 359

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  108 bits (271), Expect = 3e-26
 Identities = 36/162 (22%), Positives = 60/162 (37%), Gaps = 6/162 (3%)

Query: 136 PSIQRLVLKYNRIKTVD--SAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN 193
           P ++ L L + R+K  D  S  Q    L+ ++LSH+ L     + F+    L  L L  N
Sbjct: 400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459

Query: 194 KLSSVNNK---TFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQAC 250
                N +   +   L  L++L L    L  +    F  L  +  +DL  NR++      
Sbjct: 460 HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA 519

Query: 251 FEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFT 292
              L  +  L L  N +  +       L     + +  N   
Sbjct: 520 LSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 76.6 bits (189), Expect = 1e-15
 Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 3/109 (2%)

Query: 210 KVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRS 269
           K  N     L ++P  L    +  E L+   N +  I    F  L  L  L L   Q+  
Sbjct: 15  KTYNCENLGLNEIPGTLP---NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW 71

Query: 270 VPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNM 318
           +   +F     L  L +  N    +A+ A +G   L  L     G++++
Sbjct: 72  IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSI 120

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  152 bits (386), Expect = 7e-42
 Identities = 52/216 (24%), Positives = 89/216 (41%), Gaps = 7/216 (3%)

Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTV-DSAIQFYSSLQHVD 165
               C      +   C +  L  +P  +  S + + L +N +K +   +   +S LQ +D
Sbjct: 3   SLNPCIEVVPNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLD 62

Query: 166 LSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDR 225
           LS  ++  I  + +     L  L L  N + S +  +F GL SL+ L      L  L   
Sbjct: 63  LSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESF 122

Query: 226 LFAPLSHLEELDLGQNRISRID-QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAEL 284
               L  L++L++  N I      A F  LT L  + L  N ++++      +L    ++
Sbjct: 123 PIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQV 182

Query: 285 RVGL----NVFTTLADGAFNGLGRLSALDLRGAGLT 316
            + L    N    + D AF G+ +L  L LRG   +
Sbjct: 183 NLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNS 217

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  132 bits (334), Expect = 1e-34
 Identities = 44/180 (24%), Positives = 79/180 (43%), Gaps = 2/180 (1%)

Query: 135 NPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRG-FEPQEKLVELQLNHN 193
             S++ L L +N    + +       LQH+D  H+ L  +     F   EKL+ L +++ 
Sbjct: 375 TNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434

Query: 194 KLSSVNNKTFIGLKSLKVLNLRGN-FLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFE 252
                 +  F+GL SL  L + GN F ++    +FA  ++L  LDL + ++ +I    F+
Sbjct: 435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD 494

Query: 253 GLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG 312
            L  L++L +  N L  + +  +  L  L+ L    N   T      +    L+  +L  
Sbjct: 495 TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTN 554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  115 bits (291), Expect = 7e-29
 Identities = 32/157 (20%), Positives = 61/157 (38%), Gaps = 3/157 (1%)

Query: 136 PSIQRLVLKYNRIKTVDSAIQFYS--SLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN 193
             +Q L  +++ +K V     F S   L ++D+S+          F     L  L++  N
Sbjct: 399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN 458

Query: 194 KLSSV-NNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFE 252
                  +  F    +L  L+L    LE +   +F  L  L+ L++  N +  +D + + 
Sbjct: 459 SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN 518

Query: 253 GLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLN 289
            L +L  L    N++ +       +   LA   +  N
Sbjct: 519 QLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  108 bits (271), Expect = 3e-26
 Identities = 36/194 (18%), Positives = 66/194 (34%), Gaps = 14/194 (7%)

Query: 136 PSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK 194
             +  L+L  N I++    +    +SL+++     +L ++          L +L + HN 
Sbjct: 80  HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF 139

Query: 195 LSSVN-NKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHL----EELDLGQNRISRIDQA 249
           + S      F  L +L  ++L  N+++ +       L         LD+  N I  I   
Sbjct: 140 IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQ 199

Query: 250 CFEGLTALRILYLDDNQLRSVPTPSFIY-LGMLAELR------VGLNVFTTLADGAFNGL 302
            F+G+  L  L L  N   S    + +  L  L   R                     GL
Sbjct: 200 AFQGIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL 258

Query: 303 GRLSALDLRGAGLT 316
             ++  + R     
Sbjct: 259 CDVTIDEFRLTYTN 272

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  106 bits (266), Expect = 2e-25
 Identities = 30/138 (21%), Positives = 50/138 (36%), Gaps = 2/138 (1%)

Query: 136 PSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRG-FEPQEKLVELQLNHN 193
             +  L + Y   K   D      +SL  + ++ N   +  +   F     L  L L+  
Sbjct: 424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483

Query: 194 KLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEG 253
           +L  ++   F  L  L++LN+  N L  L    +  L  L  LD   NRI          
Sbjct: 484 QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHF 543

Query: 254 LTALRILYLDDNQLRSVP 271
             +L    L +N +  + 
Sbjct: 544 PKSLAFFNLTNNSVACIC 561

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  102 bits (255), Expect = 4e-24
 Identities = 41/194 (21%), Positives = 66/194 (34%), Gaps = 28/194 (14%)

Query: 126 NLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFE--PQE 183
            L   P    P ++ L L  N+  ++        SL ++DLS N L       +      
Sbjct: 318 QLKQFPTLDLPFLKSLTLTMNKG-SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTN 376

Query: 184 KLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDR-LFAPLSHLEELDLGQNR 242
            L  L L+ N    ++   F+GL+ L+ L+ + + L+ + +   F  L  L  LD+    
Sbjct: 377 SLRHLDLSFNGAIIMSA-NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435

Query: 243 ISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGL 302
                   F GLT+L  L +  N  +                              F   
Sbjct: 436 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS-----------------------NVFANT 472

Query: 303 GRLSALDLRGAGLT 316
             L+ LDL    L 
Sbjct: 473 TNLTFLDLSKCQLE 486

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 93.2 bits (232), Expect = 4e-21
 Identities = 37/187 (19%), Positives = 62/187 (33%), Gaps = 12/187 (6%)

Query: 135 NPSIQRLVLKYNRIKTVD-SAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN 193
           + +I    L Y    + D       +++  + L+   +  +         K   L +   
Sbjct: 260 DVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHF--KWQSLSIIRC 317

Query: 194 KLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFE- 252
           +L        + L  LK L L  N            L  L  LDL +N +S      +  
Sbjct: 318 QLKQF---PTLDLPFLKSLTLTMNKGSISFK--KVALPSLSYLDLSRNALSFSGCCSYSD 372

Query: 253 -GLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD-GAFNGLGRLSALDL 310
            G  +LR L L  N    +   +F+ L  L  L    +    + +  AF  L +L  LD+
Sbjct: 373 LGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDI 431

Query: 311 RGAGLTN 317
                  
Sbjct: 432 SYTNTKI 438

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 88.6 bits (220), Expect = 1e-19
 Identities = 32/161 (19%), Positives = 56/161 (34%), Gaps = 10/161 (6%)

Query: 160 SLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFL 219
           ++    L++    +  I  F     +  + L    +  + +         + L++    L
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPK--HFKWQSLSIIRCQL 319

Query: 220 EDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLG 279
           +  P      L  L+ L L  N+ S   +     L +L  L L  N L      S+  LG
Sbjct: 320 KQFP---TLDLPFLKSLTLTMNKGSISFK--KVALPSLSYLDLSRNALSFSGCCSYSDLG 374

Query: 280 M--LAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNM 318
              L  L +  N    +    F GL  L  LD + + L  +
Sbjct: 375 TNSLRHLDLSFNGAIIM-SANFMGLEELQHLDFQHSTLKRV 414

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 76.6 bits (189), Expect = 1e-15
 Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 3/109 (2%)

Query: 210 KVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRS 269
                    L  +PD +    S  + +DL  N +  +    F   + L+ L L   ++ +
Sbjct: 14  ITYQCMDQKLSKVPDDIP---SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET 70

Query: 270 VPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNM 318
           +   ++  L  L+ L +  N   + + G+F+GL  L  L      L ++
Sbjct: 71  IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASL 119

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  144 bits (366), Expect = 2e-41
 Identities = 57/213 (26%), Positives = 86/213 (40%), Gaps = 7/213 (3%)

Query: 111 CDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHN 169
           C      +   C E N   IP  L  S + L L +N ++ + S +   +  LQ +DLS  
Sbjct: 3   CVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC 62

Query: 170 QLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAP 229
           ++  I    ++    L  L L  N + S+    F GL SL+ L      L  L +     
Sbjct: 63  EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 122

Query: 230 LSHLEELDLGQNRISRIDQA-CFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGL 288
           L  L+EL++  N I        F  LT L  L L  N+++S+       L  +  L + L
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182

Query: 289 ----NVFTTLADGAFNGLGRLSALDLRGAGLTN 317
               N    +  GAF  + RL  L L    L +
Sbjct: 183 DLSLNPMNFIQPGAFKEI-RLKELALDTNQLKS 214

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  103 bits (259), Expect = 5e-26
 Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 9/161 (5%)

Query: 136 PSIQRLVLKYNRIKTVDSAIQFY--SSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN 193
             +  L+L  N I+++     F   SSLQ +      L ++        + L EL + HN
Sbjct: 76  SHLSTLILTGNPIQSLALGA-FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134

Query: 194 KLSSV-NNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLE----ELDLGQNRISRIDQ 248
            + S    + F  L +L+ L+L  N ++ +       L  +      LDL  N ++ I  
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194

Query: 249 ACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLN 289
             F+ +  L+ L LD NQL+SVP   F  L  L ++ +  N
Sbjct: 195 GAFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.0 bits (102), Expect = 6e-05
 Identities = 13/60 (21%), Positives = 24/60 (40%)

Query: 134 LNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN 193
           +      L L  N +  +         L+ + L  NQL ++P   F+    L ++ L+ N
Sbjct: 175 MPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  149 bits (379), Expect = 4e-41
 Identities = 56/212 (26%), Positives = 85/212 (40%), Gaps = 7/212 (3%)

Query: 111 CDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHN 169
           C      +   C E N   IP  L  S + L L +N ++ +   +   +  LQ +DLS  
Sbjct: 3   CVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC 62

Query: 170 QLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAP 229
           ++  I    ++    L  L L  N + S+    F GL SL+ L      L  L +     
Sbjct: 63  EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 122

Query: 230 LSHLEELDLGQNRISRIDQ-ACFEGLTALRILYLDDNQLRSVPTPSFIYLGML----AEL 284
           L  L+EL++  N I        F  LT L  L L  N+++S+       L  +      L
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182

Query: 285 RVGLNVFTTLADGAFNGLGRLSALDLRGAGLT 316
            + LN    +  GAF  + RL  L LR    +
Sbjct: 183 DLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDS 213

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  128 bits (323), Expect = 2e-33
 Identities = 47/157 (29%), Positives = 77/157 (49%), Gaps = 2/157 (1%)

Query: 135 NPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRG-FEPQEKLVELQLNHN 193
             S++ L L +N + T+ S       L+H+D  H+ L  +     F     L+ L ++H 
Sbjct: 372 TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431

Query: 194 KLSSVNNKTFIGLKSLKVLNLRGNFL-EDLPDRLFAPLSHLEELDLGQNRISRIDQACFE 252
                 N  F GL SL+VL + GN   E+    +F  L +L  LDL Q ++ ++    F 
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491

Query: 253 GLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLN 289
            L++L++L +  NQL+SVP   F  L  L ++ +  N
Sbjct: 492 SLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  123 bits (311), Expect = 1e-31
 Identities = 46/182 (25%), Positives = 76/182 (41%), Gaps = 6/182 (3%)

Query: 136 PSIQRLVLKYNRIKTVD---SAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNH 192
           PS++ L L  N +        +    +SL+++DLS N ++ +    F   E+L  L   H
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQH 405

Query: 193 NKLSSVNN-KTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISR-IDQAC 250
           + L  ++    F+ L++L  L++         + +F  LS LE L +  N          
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465

Query: 251 FEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDL 310
           F  L  L  L L   QL  +   +F  L  L  L +  N   ++ DG F+ L  L  + L
Sbjct: 466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWL 525

Query: 311 RG 312
             
Sbjct: 526 HT 527

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  107 bits (269), Expect = 4e-26
 Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 3/135 (2%)

Query: 136 PSIQRLVLKYNRIKTVDSAIQFY--SSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN 193
             ++ L  +++ +K +     F    +L ++D+SH          F     L  L++  N
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455

Query: 194 KL-SSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFE 252
               +     F  L++L  L+L    LE L    F  LS L+ L++  N++  +    F+
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFD 515

Query: 253 GLTALRILYLDDNQL 267
            LT+L+ ++L  N  
Sbjct: 516 RLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  104 bits (260), Expect = 7e-25
 Identities = 42/186 (22%), Positives = 68/186 (36%), Gaps = 10/186 (5%)

Query: 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKL 195
            ++    L    I+ V     +    QH++L + +    P       + L  L    NK 
Sbjct: 282 TNVSSFSLVSVTIERVKD-FSYNFGWQHLELVNCKFGQFP---TLKLKSLKRLTFTSNKG 337

Query: 196 SSVNNKTFIGLKSLKVLNLRGNFLE--DLPDRLFAPLSHLEELDLGQNRISRIDQACFEG 253
            +    + + L SL+ L+L  N L       +     + L+ LDL  N +  +    F G
Sbjct: 338 GNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLG 394

Query: 254 LTALRILYLDDNQLRSVPTPS-FIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG 312
           L  L  L    + L+ +   S F+ L  L  L +         +G FNGL  L  L + G
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454

Query: 313 AGLTNM 318
                 
Sbjct: 455 NSFQEN 460

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  103 bits (259), Expect = 1e-24
 Identities = 46/195 (23%), Positives = 74/195 (37%), Gaps = 14/195 (7%)

Query: 136 PSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK 194
             +  L+L  N I+++   A    SSLQ +      L ++        + L EL + HN 
Sbjct: 76  SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135

Query: 195 LSSVN-NKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLE----ELDLGQNRISRIDQA 249
           + S    + F  L +L+ L+L  N ++ +       L  +      LDL  N ++ I   
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 195

Query: 250 CFEGLTALRILYLDDNQLR-SVPTPSFIYLGMLAELRVGLNVF------TTLADGAFNGL 302
            F+ +  L  L L +N    +V       L  L   R+ L  F            A  GL
Sbjct: 196 AFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254

Query: 303 GRLSALDLRGAGLTN 317
             L+  + R A L  
Sbjct: 255 CNLTIEEFRLAYLDY 269

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 87.1 bits (216), Expect = 4e-19
 Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 2/111 (1%)

Query: 136 PSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRG-FEPQEKLVELQLNHN 193
            ++  L + +   +   +      SSL+ + ++ N      +   F     L  L L+  
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480

Query: 194 KLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRIS 244
           +L  ++   F  L SL+VLN+  N L+ +PD +F  L+ L+++ L  N   
Sbjct: 481 QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 73.6 bits (181), Expect = 1e-14
 Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 3/109 (2%)

Query: 210 KVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRS 269
                       +PD L       + LDL  N +  +    F     L++L L   ++++
Sbjct: 10  ITYQCMELNFYKIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66

Query: 270 VPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNM 318
           +   ++  L  L+ L +  N   +LA GAF+GL  L  L      L ++
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 115

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  143 bits (362), Expect = 2e-40
 Identities = 57/242 (23%), Positives = 93/242 (38%), Gaps = 35/242 (14%)

Query: 103 ASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTV----------- 151
               CP  C C+     V C +  L+ +P  L P    L L+ N+I  +           
Sbjct: 21  MGPVCPFRCQCHLRV--VQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNL 78

Query: 152 --------------DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSS 197
                           A      L+ + LS NQL  +P +  +    L EL+++ N+++ 
Sbjct: 79  HTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPK---TLQELRVHENEITK 135

Query: 198 VNNKTFIGLKSLKVLNLRGNFLED--LPDRLFAPLSHLEELDLGQNRISRIDQACFEGLT 255
           V    F GL  + V+ L  N L+   + +  F  +  L  + +    I+ I Q     LT
Sbjct: 136 VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLT 195

Query: 256 ALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGL 315
               L+LD N++  V   S   L  LA+L +  N  + + +G+      L  L L    L
Sbjct: 196 ---ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252

Query: 316 TN 317
             
Sbjct: 253 VK 254

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  126 bits (318), Expect = 6e-34
 Identities = 37/188 (19%), Positives = 77/188 (40%), Gaps = 15/188 (7%)

Query: 136 PSIQRLVLKYNRIKTV---DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNH 192
             +  + L  N +K+    + A Q    L ++ ++   +  IP         L EL L+ 
Sbjct: 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP---SLTELHLDG 201

Query: 193 NKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFE 252
           NK++ V+  +  GL +L  L L  N +  + +   A   HL EL L  N++ ++      
Sbjct: 202 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG-LA 260

Query: 253 GLTALRILYLDDNQLRSVPTPSFIYLGM------LAELRVGLN--VFTTLADGAFNGLGR 304
               ++++YL +N + ++ +  F   G        + + +  N   +  +    F  +  
Sbjct: 261 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV 320

Query: 305 LSALDLRG 312
            +A+ L  
Sbjct: 321 RAAVQLGN 328

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  105 bits (263), Expect = 4e-26
 Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 10/149 (6%)

Query: 126 NLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEK 184
           N+  IP  L PS+  L L  N+I  VD+ +++  ++L  + LS N +  +          
Sbjct: 182 NITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 241

Query: 185 LVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAP------LSHLEELDL 238
           L EL LN+NKL  V        K ++V+ L  N +  +    F P       +    + L
Sbjct: 242 LRELHLNNNKLVKVPG-GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSL 300

Query: 239 GQNRI--SRIDQACFEGLTALRILYLDDN 265
             N +    I  + F  +     + L + 
Sbjct: 301 FSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 81.6 bits (202), Expect = 1e-17
 Identities = 23/116 (19%), Positives = 54/116 (46%), Gaps = 10/116 (8%)

Query: 136 PSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK 194
            ++ +L L +N I  VD+ ++     L+ + L++N+LV +P  G    + +  + L++N 
Sbjct: 216 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP-GGLADHKYIQVVYLHNNN 274

Query: 195 LSSVNNKTFI------GLKSLKVLNLRGNFLE--DLPDRLFAPLSHLEELDLGQNR 242
           +S++ +  F          S   ++L  N ++  ++    F  +     + LG  +
Sbjct: 275 ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  142 bits (359), Expect = 1e-39
 Identities = 47/217 (21%), Positives = 90/217 (41%), Gaps = 8/217 (3%)

Query: 107 CP-PDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHV 164
           C    C C++      C+E+ +  IP  L  +   L     +++ +   A   +  L+ +
Sbjct: 2   CHHRICHCSNRV--FLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKI 59

Query: 165 DLSHNQLV-NIPIRGFEPQEKLVELQLNH-NKLSSVNNKTFIGLKSLKVLNLRGNFLEDL 222
           ++S N ++  I    F    KL E+++   N L  +N + F  L +L+ L +    ++ L
Sbjct: 60  EISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHL 119

Query: 223 PDRLFAPLSHLEELDLGQN-RISRIDQACFEGLTA-LRILYLDDNQLRSVPTPSFIYLGM 280
           PD           LD+  N  I  I++  F GL+    IL+L+ N ++ +   +F    +
Sbjct: 120 PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQL 179

Query: 281 LAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN 317
                   N    L +  F+G      LD+    + +
Sbjct: 180 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 216

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  100 bits (251), Expect = 2e-24
 Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 5/142 (3%)

Query: 136 PSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHN-QLVNIPIRGFEP-QEKLVELQLNH 192
           P++Q L++    IK + D           +D+  N  +  I    F     + V L LN 
Sbjct: 104 PNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK 163

Query: 193 NKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFE 252
           N +  ++N  F G +  ++     N LE+LP+ +F   S    LD+ + RI  +     E
Sbjct: 164 NGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE 223

Query: 253 GLTALRILYLDDNQLRSVPTPS 274
            L  LR        L+ +PT  
Sbjct: 224 NLKKLRARST--YNLKKLPTLE 243

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  144 bits (365), Expect = 4e-39
 Identities = 57/229 (24%), Positives = 100/229 (43%), Gaps = 10/229 (4%)

Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTV-DSAIQFYSSLQHVD 165
           C     C+        +  +   IP  L  +++ L L +N+I  +    ++  ++LQ + 
Sbjct: 4   CDASGVCD-------GRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLI 56

Query: 166 LSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDR 225
           L  +++  I    F     L  L L+ N LSS+++  F  L SLK LNL GN  + L   
Sbjct: 57  LKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVT 116

Query: 226 -LFAPLSHLEELDLG-QNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAE 283
            LF  L++L+ L +G     S I +  F GLT+L  L +    LR+  + S   +  +  
Sbjct: 117 SLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHH 176

Query: 284 LRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHWI 332
           L + L+    L +   + L  +  L+LR   L       + + +    +
Sbjct: 177 LTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPM 225

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  112 bits (282), Expect = 9e-28
 Identities = 36/179 (20%), Positives = 72/179 (40%), Gaps = 3/179 (1%)

Query: 135 NPSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRG-FEPQEKLVELQLNH 192
             S++ L L  N + ++  S     SSL++++L  N    + +   F     L  L++ +
Sbjct: 73  LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN 132

Query: 193 -NKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACF 251
               S +    F GL SL  L ++   L +   +    +  +  L L  +  + + +   
Sbjct: 133 VETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFA 192

Query: 252 EGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDL 310
           + L+++R L L D  L            + + ++      + L D +FN L +L    L
Sbjct: 193 DILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYIL 251

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  104 bits (261), Expect = 5e-25
 Identities = 39/183 (21%), Positives = 75/183 (40%), Gaps = 16/183 (8%)

Query: 136 PSIQRLVLKYNRIKTV----DSAIQFYSSLQHVDLSHNQLVNIPIRG--FEPQEKLVELQ 189
            S++ L L  N +        +    + SLQ + LS N L ++   G      + L  L 
Sbjct: 334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLD 393

Query: 190 LNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQA 249
           ++ N    + + +    + ++ LNL    +  +   +      LE LD+  N +      
Sbjct: 394 ISRNTFHPMPD-SCQWPEKMRFLNLSSTGIRVVKTCIP---QTLEVLDVSNNNLDSFS-- 447

Query: 250 CFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALD 309
               L  L+ LY+  N+L+++P  S     +L  +++  N   ++ DG F+ L  L  + 
Sbjct: 448 --LFLPRLQELYISRNKLKTLPDASL--FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIW 503

Query: 310 LRG 312
           L  
Sbjct: 504 LHT 506

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 99.8 bits (249), Expect = 2e-23
 Identities = 39/157 (24%), Positives = 72/157 (45%), Gaps = 13/157 (8%)

Query: 136 PSIQRLVLKYNRIKTVDSAIQF---YSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNH 192
           PS+Q LVL  N ++++    +      +L  +D+S N    +P    +  EK+  L L+ 
Sbjct: 361 PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMP-DSCQWPEKMRFLNLSS 419

Query: 193 NKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFE 252
             +  V        ++L+VL++  N L+         L  L+EL + +N++  +  A   
Sbjct: 420 TGIRVVKTCIP---QTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLKTLPDASL- 471

Query: 253 GLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLN 289
               L ++ +  NQL+SVP   F  L  L ++ +  N
Sbjct: 472 -FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 94.8 bits (236), Expect = 1e-21
 Identities = 32/174 (18%), Positives = 63/174 (36%), Gaps = 4/174 (2%)

Query: 136 PSIQRLVLKYNRIKTVDSAIQFY--SSLQHVDLSH-NQLVNIPIRGFEPQEKLVELQLNH 192
            S++ L L  N  +T+     F   ++LQ + + +      I    F     L EL++  
Sbjct: 98  SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA 157

Query: 193 NKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFE 252
             L +  +++   ++ +  L L  +    L +     LS +  L+L    ++R   +   
Sbjct: 158 LSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLP 217

Query: 253 GLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLS 306
                  +     +   +   SF  L  L    + L+      D   NGLG  +
Sbjct: 218 VDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV-EFDDCTLNGLGDFN 270

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 84.4 bits (209), Expect = 3e-18
 Identities = 26/231 (11%), Positives = 69/231 (29%), Gaps = 48/231 (20%)

Query: 136 PSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQ----- 189
             I  L L  +    + +      SS+++++L    L           E    ++     
Sbjct: 172 RDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFR 231

Query: 190 -------------------------------------LNHNKLSSVNNKTFIGLKSLKVL 212
                                                 N ++   V+    +   +++ L
Sbjct: 232 GSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRL 291

Query: 213 NLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPT 272
           ++   +L      +++ L  ++ + +  +++  +  +  + L +L  L L +N +     
Sbjct: 292 HIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYL 351

Query: 273 PSFIYLGMLAELRV---GLNVFTTL--ADGAFNGLGRLSALDLRGAGLTNM 318
            +    G    L+      N   ++         L  L++LD+       M
Sbjct: 352 KNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM 402

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 77.8 bits (192), Expect = 5e-16
 Identities = 27/108 (25%), Positives = 54/108 (50%), Gaps = 8/108 (7%)

Query: 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKL 195
             ++ L L    I+ V + I    +L+ +D+S+N L +  +       +L EL ++ NKL
Sbjct: 410 EKMRFLNLSSTGIRVVKTCIP--QTLEVLDVSNNNLDSFSLFL----PRLQELYISRNKL 463

Query: 196 SSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRI 243
            ++ + +      L V+ +  N L+ +PD +F  L+ L+++ L  N  
Sbjct: 464 KTLPDASL--FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  139 bits (353), Expect = 6e-39
 Identities = 59/249 (23%), Positives = 98/249 (39%), Gaps = 36/249 (14%)

Query: 96  LLLLVHQASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-- 153
           L  L    SA CP  C C+     V C +  L  +P  ++P    L L+ N I  +    
Sbjct: 16  LDSLPPTYSAMCPFGCHCHLRV--VQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDD 73

Query: 154 -----------------------AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQL 190
                                  A      LQ + +S N LV IP         LVEL++
Sbjct: 74  FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPS---SLVELRI 130

Query: 191 NHNKLSSVNNKTFIGLKSLKVLNLRGNFLED--LPDRLFAPLSHLEELDLGQNRISRIDQ 248
           + N++  V    F GL+++  + + GN LE+       F  L  L  L + + +++ I +
Sbjct: 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTGIPK 189

Query: 249 ACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSAL 308
                   L  L+LD N+++++     +    L  L +G N    + +G+ + L  L  L
Sbjct: 190 DLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLREL 246

Query: 309 DLRGAGLTN 317
            L    L+ 
Sbjct: 247 HLDNNKLSR 255

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  122 bits (308), Expect = 2e-32
 Identities = 37/185 (20%), Positives = 72/185 (38%), Gaps = 14/185 (7%)

Query: 136 PSIQRLVLKYNRIK--TVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN 193
            ++  + +  N ++    +        L ++ +S  +L  IP    E    L EL L+HN
Sbjct: 147 RNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPE---TLNELHLDHN 203

Query: 194 KLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEG 253
           K+ ++  +  +    L  L L  N +  + +   + L  L EL L  N++SR+       
Sbjct: 204 KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG-LPD 262

Query: 254 LTALRILYLDDNQLRSVPTPSFIYLGM------LAELRVGLN--VFTTLADGAFNGLGRL 305
           L  L+++YL  N +  V    F  +G          + +  N   +  +    F  +   
Sbjct: 263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDR 322

Query: 306 SALDL 310
            A+  
Sbjct: 323 LAIQF 327

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  118 bits (298), Expect = 4e-31
 Identities = 49/197 (24%), Positives = 83/197 (42%), Gaps = 16/197 (8%)

Query: 126 NLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFY--SSLQHVDLSHNQLVNIPI--RGFEP 181
           +L  IP  L  S+  L +  NRI+ V   + F    ++  +++  N L N       F+ 
Sbjct: 113 HLVEIPPNLPSSLVELRIHDNRIRKVPKGV-FSGLRNMNCIEMGGNPLENSGFEPGAFDG 171

Query: 182 QEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQN 241
             KL  L+++  KL+ +        ++L  L+L  N ++ +        S L  L LG N
Sbjct: 172 L-KLNYLRISEAKLTGIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN 227

Query: 242 RISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNG 301
           +I  I+      L  LR L+LD+N+L  VP      L +L  + +  N  T +    F  
Sbjct: 228 QIRMIENGSLSFLPTLRELHLDNNKLSRVP-AGLPDLKLLQVVYLHTNNITKVGVNDFCP 286

Query: 302 LG------RLSALDLRG 312
           +G        + + L  
Sbjct: 287 VGFGVKRAYYNGISLFN 303

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  103 bits (258), Expect = 2e-25
 Identities = 38/150 (25%), Positives = 63/150 (42%), Gaps = 10/150 (6%)

Query: 126 NLDVIPITLNPSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEK 184
            L  IP  L  ++  L L +N+I+ +    +  YS L  + L HNQ+  I          
Sbjct: 183 KLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPT 242

Query: 185 LVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPL------SHLEELDL 238
           L EL L++NKLS V       LK L+V+ L  N +  +    F P+      ++   + L
Sbjct: 243 LRELHLDNNKLSRVP-AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISL 301

Query: 239 GQNRIS--RIDQACFEGLTALRILYLDDNQ 266
             N +    +  A F  +T    +   + +
Sbjct: 302 FNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  136 bits (343), Expect = 5e-38
 Identities = 54/207 (26%), Positives = 77/207 (37%), Gaps = 7/207 (3%)

Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAI-QFYSSLQHVD 165
           C      +     V C + NL  +P  L      L L  N + T   A    Y+ L  ++
Sbjct: 4   CEVSKVASHLE--VNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 166 LSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDR 225
           L   +L  + +        L  L L+HN+L S+       L +L VL++  N L  LP  
Sbjct: 62  LDRAELTKLQV--DGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLG 118

Query: 226 LFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELR 285
               L  L+EL L  N +  +          L  L L +N L  +P      L  L  L 
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 286 VGLNVFTTLADGAFNGLGRLSALDLRG 312
           +  N   T+  G F G   L    L G
Sbjct: 179 LQENSLYTIPKGFF-GSHLLPFAFLHG 204

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  104 bits (261), Expect = 3e-26
 Identities = 43/158 (27%), Positives = 63/158 (39%), Gaps = 6/158 (3%)

Query: 159 SSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNF 218
           +S   V+     L  +P    +       L L+ N L + +  T +    L  LNL    
Sbjct: 10  ASHLEVNCDKRNLTALPPDLPK---DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66

Query: 219 LEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYL 278
           L  L   +   L  L  LDL  N++  +     + L AL +L +  N+L S+P  +   L
Sbjct: 67  LTKLQ--VDGTLPVLGTLDLSHNQLQSLPLL-GQTLPALTVLDVSFNRLTSLPLGALRGL 123

Query: 279 GMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT 316
           G L EL +  N   TL  G      +L  L L    LT
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score =  129 bits (327), Expect = 2e-36
 Identities = 50/167 (29%), Positives = 77/167 (46%), Gaps = 4/167 (2%)

Query: 103 ASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQF--YSS 160
            S  CP  C C   T  V C    L+ IP  +      L L  N    +++   F     
Sbjct: 1   GSLACPEKCRCEGTT--VDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQ 58

Query: 161 LQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLE 220
           L+ ++ S+N++ +I    FE    + E+ L  N+L +V +K F GL+SLK L LR N + 
Sbjct: 59  LRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT 118

Query: 221 DLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQL 267
            + +  F  LS +  L L  N+I+ +    F+ L +L  L L  N  
Sbjct: 119 CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 80.5 bits (199), Expect = 4e-18
 Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 208 SLKVLNLRGNFLEDLPDR-LFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQ 266
               L L  N    L    +F  L  L +++   N+I+ I++  FEG + +  + L  N+
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92

Query: 267 LRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG 312
           L +V    F  L  L  L +  N  T + + +F GL  +  L L  
Sbjct: 93  LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD 138

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  136 bits (345), Expect = 3e-36
 Identities = 56/212 (26%), Positives = 85/212 (40%), Gaps = 7/212 (3%)

Query: 111 CDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHN 169
           C      +   C E N   IP  L  S + L L +N ++ +   +   +  LQ +DLS  
Sbjct: 3   CVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC 62

Query: 170 QLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAP 229
           ++  I    ++    L  L L  N + S+    F GL SL+ L      L  L +     
Sbjct: 63  EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 122

Query: 230 LSHLEELDLGQNRISRID-QACFEGLTALRILYLDDNQLRSVPTPSFIYLGML----AEL 284
           L  L+EL++  N I        F  LT L  L L  N+++S+       L  +      L
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182

Query: 285 RVGLNVFTTLADGAFNGLGRLSALDLRGAGLT 316
            + LN    +  GAF  + RL  L LR    +
Sbjct: 183 DLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDS 213

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  118 bits (298), Expect = 9e-30
 Identities = 50/180 (27%), Positives = 80/180 (44%), Gaps = 3/180 (1%)

Query: 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRG-FEPQEKLVELQLNHNK 194
            S++ L L +N + T+ S       L+H+D  H+ L  +     F     L+ L ++H  
Sbjct: 373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432

Query: 195 LSSVNNKTFIGLKSLKVLNLRGN-FLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEG 253
                N  F GL SL+VL + GN F E+    +F  L +L  LDL Q ++ ++    F  
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492

Query: 254 LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGR-LSALDLRG 312
           L++L++L +  N   S+ T  +  L  L  L   LN   T            L+ L+L  
Sbjct: 493 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 552

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 99.7 bits (249), Expect = 2e-23
 Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 3/135 (2%)

Query: 136 PSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLV-NIPIRGFEPQEKLVELQLNHN 193
            ++  L + +   +   +      SSL+ + ++ N    N     F     L  L L+  
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480

Query: 194 KLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEG 253
           +L  ++   F  L SL+VLN+  N    L    +  L+ L+ LD   N I    +   + 
Sbjct: 481 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 540

Query: 254 L-TALRILYLDDNQL 267
             ++L  L L  N  
Sbjct: 541 FPSSLAFLNLTQNDF 555

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 95.1 bits (237), Expect = 8e-22
 Identities = 44/204 (21%), Positives = 68/204 (33%), Gaps = 25/204 (12%)

Query: 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIP-------------------I 176
            ++    L    I+ V     +    QH++L + +    P                    
Sbjct: 282 TNVSSFSLVSVTIERVKD-FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA 340

Query: 177 RGFEPQEKLVELQLNHNKLS--SVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLE 234
                   L  L L+ N LS     +++  G  SLK L+L  N +  +    F  L  LE
Sbjct: 341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLE 399

Query: 235 ELDLGQNRISR-IDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFT- 292
            LD   + + +  + + F  L  L  L +     R      F  L  L  L++  N F  
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 459

Query: 293 TLADGAFNGLGRLSALDLRGAGLT 316
                 F  L  L+ LDL    L 
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQLE 483

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 90.9 bits (226), Expect = 2e-20
 Identities = 39/194 (20%), Positives = 74/194 (38%), Gaps = 17/194 (8%)

Query: 135 NPSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPI-RGFEPQEKLVELQLNH 192
             S+Q+LV     + ++ +  I    +L+ ++++HN + +  +   F     L  L L+ 
Sbjct: 99  LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158

Query: 193 NKLSSVNNKTFIGLKSLKV----LNLRGNFLEDLPDRLFAPLSHLEELDLGQNRIS-RID 247
           NK+ S+       L  + +    L+L  N +  +    F  +  L +L L  N  S  + 
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVM 217

Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELR---------VGLNVFTTLADGA 298
           + C +GL  L +  L   + R+           L  L            L+ +       
Sbjct: 218 KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL 277

Query: 299 FNGLGRLSALDLRG 312
           FN L  +S+  L  
Sbjct: 278 FNCLTNVSSFSLVS 291

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 78.5 bits (194), Expect = 3e-16
 Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 3/112 (2%)

Query: 136 PSIQRLVLKYNRIKTVDSAIQFY--SSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN 193
            S++ L +  N  +       F    +L  +DLS  QL  +    F     L  L ++HN
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504

Query: 194 KLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPL-SHLEELDLGQNRIS 244
              S++   +  L SL+VL+   N +     +      S L  L+L QN  +
Sbjct: 505 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 77.0 bits (190), Expect = 9e-16
 Identities = 34/187 (18%), Positives = 57/187 (30%), Gaps = 17/187 (9%)

Query: 134 LNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQL-VNIPIRGFEPQEKLVELQLNH 192
           +      L L  N +  +         L  + L +N   +N+     +    L   +L  
Sbjct: 175 MPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 234

Query: 193 NKLSSVNN------KTFIGLKSLKVLNLRGNFLEDLPDR---LFAPLSHLEELDLGQNRI 243
            +  +  N          GL +L +   R  +L+   D    LF  L+++    L    I
Sbjct: 235 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294

Query: 244 SRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLG 303
            R+    F      + L L + +    PT     L  L           +        L 
Sbjct: 295 ERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS-----EVDLP 347

Query: 304 RLSALDL 310
            L  LDL
Sbjct: 348 SLEFLDL 354

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 66.2 bits (162), Expect = 3e-12
 Identities = 25/114 (21%), Positives = 45/114 (39%), Gaps = 3/114 (2%)

Query: 210 KVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRS 269
                       +PD L       + LDL  N +  +    F     L++L L   ++++
Sbjct: 10  ITYQCMELNFYKIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66

Query: 270 VPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSM 323
           +   ++  L  L+ L +  N   +LA GAF+GL  L  L      L ++    +
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI 120

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  134 bits (338), Expect = 6e-36
 Identities = 47/225 (20%), Positives = 79/225 (35%), Gaps = 18/225 (8%)

Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVD 165
              +C          C    L  +P  L   +  + L  N I  ++  +      LQ + 
Sbjct: 4   GTSECSVI--GYNAICINRGLHQVP-ELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLK 60

Query: 166 LSHNQL-VNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLED--L 222
           +      + I    F     L+ L+L++N+   +    F GL +L+VL L    L+   L
Sbjct: 61  VEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVL 120

Query: 223 PDRLFAPLSHLEELDLGQNRISRID-QACFEGLTALRILYLDDNQLRSVPTPSFIYLGML 281
               F PL+ LE L L  N I +I   + F  +    +L L  N+++S+     +     
Sbjct: 121 SGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGK 180

Query: 282 AELRVGL----------NVFTTLADGAFNGLGRLSALDLRGAGLT 316
               + L                  G       ++ LDL G G  
Sbjct: 181 HFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK 225

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  121 bits (304), Expect = 4e-31
 Identities = 41/150 (27%), Positives = 66/150 (44%), Gaps = 2/150 (1%)

Query: 165 DLSHNQLVNIPIRGFE--PQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDL 222
              H    +     F+      +    L+ +K+ ++    F     L+ L L  N +  +
Sbjct: 255 SFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI 314

Query: 223 PDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLA 282
            D  F  L+HL +L+L QN +  ID   FE L  L +L L  N +R++   SF+ L  L 
Sbjct: 315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK 374

Query: 283 ELRVGLNVFTTLADGAFNGLGRLSALDLRG 312
           EL +  N   ++ DG F+ L  L  + L  
Sbjct: 375 ELALDTNQLKSVPDGIFDRLTSLQKIWLHT 404

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  119 bits (300), Expect = 1e-30
 Identities = 46/131 (35%), Positives = 67/131 (51%)

Query: 159 SSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNF 218
           S ++  DLS +++  +    F     L +L L  N+++ +++  F GL  L  LNL  NF
Sbjct: 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF 334

Query: 219 LEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYL 278
           L  +  R+F  L  LE LDL  N I  +    F GL  L+ L LD NQL+SVP   F  L
Sbjct: 335 LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRL 394

Query: 279 GMLAELRVGLN 289
             L ++ +  N
Sbjct: 395 TSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  100 bits (252), Expect = 5e-24
 Identities = 42/208 (20%), Positives = 77/208 (37%), Gaps = 27/208 (12%)

Query: 136 PSIQRLVLKYNRIKTVDSAIQFYS--SLQHVDLSHNQLVNIPIRGFE--PQEKLVELQLN 191
            S++ LVL+ N IK +  A  F +      +DL+ N++ +I          +    L+L+
Sbjct: 129 TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188

Query: 192 HNKLSSVNN--------KTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEEL------- 236
              L  +N                S+  L+L GN  ++   + F       ++       
Sbjct: 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248

Query: 237 ------DLGQNRISRIDQACFEGL--TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGL 288
                   G       D   F+GL  + ++   L  +++ ++    F +   L +L +  
Sbjct: 249 SYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQ 308

Query: 289 NVFTTLADGAFNGLGRLSALDLRGAGLT 316
           N    + D AF GL  L  L+L    L 
Sbjct: 309 NEINKIDDNAFWGLTHLLKLNLSQNFLG 336

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score =  123 bits (311), Expect = 4e-34
 Identities = 55/187 (29%), Positives = 85/187 (45%), Gaps = 25/187 (13%)

Query: 103 ASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQ 162
            S  CP  C C++    V C+   L  IP  L  +I  + L+ N IK             
Sbjct: 1   GSLHCPAACTCSNNI--VDCRGKGLTEIPTNLPETITEIRLEQNTIKV------------ 46

Query: 163 HVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDL 222
                      IP   F P +KL  + L++N++S +    F GL+SL  L L GN + +L
Sbjct: 47  -----------IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL 95

Query: 223 PDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLA 282
           P  LF  L  L+ L L  N+I+ +    F+ L  L +L L DN+L+++   +F  L  + 
Sbjct: 96  PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ 155

Query: 283 ELRVGLN 289
            + +  N
Sbjct: 156 TMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 82.4 bits (204), Expect = 1e-18
 Identities = 32/109 (29%), Positives = 49/109 (44%)

Query: 208 SLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQL 267
           ++  + L  N ++ +P   F+P   L  +DL  N+IS +    F+GL +L  L L  N++
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92

Query: 268 RSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT 316
             +P   F  L  L  L +  N    L   AF  L  L+ L L    L 
Sbjct: 93  TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ 141

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  127 bits (320), Expect = 7e-34
 Identities = 33/199 (16%), Positives = 73/199 (36%), Gaps = 17/199 (8%)

Query: 109 PDCDCNDETLVV--TCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDL 166
           P+  C D  L       + ++D+    +    + + L               ++ + V  
Sbjct: 8   PEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITL---------------NNQKIVTF 52

Query: 167 SHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRL 226
            ++ +  +P    +   ++  L LN  ++  ++   F    +++ L +  N +  LP  +
Sbjct: 53  KNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV 112

Query: 227 FAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRV 286
           F  +  L  L L +N +S + +  F     L  L + +N L  +   +F     L  L++
Sbjct: 113 FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 172

Query: 287 GLNVFTTLADGAFNGLGRL 305
             N  T +       L   
Sbjct: 173 SSNRLTHVDLSLIPSLFHA 191

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  119 bits (300), Expect = 6e-31
 Identities = 42/180 (23%), Positives = 74/180 (41%), Gaps = 11/180 (6%)

Query: 126 NLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKL 185
            L  + ++L PS+    + YN + T+   I    +++ +D SHN +  +         +L
Sbjct: 176 RLTHVDLSLIPSLFHANVSYNLLSTLAIPI----AVEELDASHNSINVVRGPVN---VEL 228

Query: 186 VELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISR 245
             L+L HN L+       +    L  ++L  N LE +    F  +  LE L +  NR+  
Sbjct: 229 TILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA 286

Query: 246 IDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRL 305
           ++    + +  L++L L  N L  V   +      L  L +  N   TL     + L  L
Sbjct: 287 LNLY-GQPIPTLKVLDLSHNHLLHVE-RNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNL 344

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  112 bits (281), Expect = 3e-28
 Identities = 44/177 (24%), Positives = 70/177 (39%), Gaps = 14/177 (7%)

Query: 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKL 195
            S+Q L L  NR+  VD ++    SL H ++S+N L  +          + EL  +HN +
Sbjct: 165 TSLQNLQLSSNRLTHVDLSL--IPSLFHANVSYNLLSTLA-----IPIAVEELDASHNSI 217

Query: 196 SSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLT 255
           + V          L +L L+ N L D           L E+DL  N + +I    F  + 
Sbjct: 218 NVVRGPVN---VELTILKLQHNNLTDTAW--LLNYPGLVEVDLSYNELEKIMYHPFVKMQ 272

Query: 256 ALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG 312
            L  LY+ +N+L ++       +  L  L +  N    +         RL  L L  
Sbjct: 273 RLERLYISNNRLVALN-LYGQPIPTLKVLDLSHNHLLHVERNQPQ-FDRLENLYLDH 327

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  110 bits (278), Expect = 8e-28
 Identities = 46/183 (25%), Positives = 69/183 (37%), Gaps = 14/183 (7%)

Query: 136 PSIQRLVLKYNRIKTVDSAI-QFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK 194
           P +  LVL+ N + ++   I      L  + +S+N L  I    F+    L  LQL+ N+
Sbjct: 117 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 176

Query: 195 LSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGL 254
           L+ V+        SL   N+  N L  L          +EELD   N I+ +       L
Sbjct: 177 LTHVDLSLI---PSLFHANVSYNLLSTLA-----IPIAVEELDASHNSINVVRGPVNVEL 228

Query: 255 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAG 314
           T   IL L  N L        +    L E+ +  N    +    F  + RL  L +    
Sbjct: 229 T---ILKLQHNNLTDTAW--LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 283

Query: 315 LTN 317
           L  
Sbjct: 284 LVA 286

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  102 bits (257), Expect = 5e-25
 Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 6/143 (4%)

Query: 126 NLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKL 185
           +++V+   +N  +  L L++N +    + +  Y  L  VDLS+N+L  I    F   ++L
Sbjct: 216 SINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 274

Query: 186 VELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISR 245
             L +++N+L ++N      + +LKVL+L  N L  +          LE L L  N I  
Sbjct: 275 ERLYISNNRLVALN-LYGQPIPTLKVLDLSHNHLLHVERNQP-QFDRLENLYLDHNSIVT 332

Query: 246 IDQACFEGLTALRILYLDDNQLR 268
           +          L+ L L  N   
Sbjct: 333 LK---LSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 18/92 (19%), Positives = 38/92 (41%), Gaps = 6/92 (6%)

Query: 126 NLDVIPITLN--PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQE 183
            L  + +     P+++ L L +N +  V+     +  L+++ L HN +V + +       
Sbjct: 283 RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTH---H 339

Query: 184 KLVELQLNHNKLSSVNNKT-FIGLKSLKVLNL 214
            L  L L+HN     + +  F  +    V + 
Sbjct: 340 TLKNLTLSHNDWDCNSLRALFRNVARPAVDDA 371

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  128 bits (323), Expect = 3e-33
 Identities = 30/195 (15%), Positives = 71/195 (36%), Gaps = 15/195 (7%)

Query: 111 CDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQ 170
           C  ++        + ++D+    +    + + L               ++ + V   ++ 
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITL---------------NNQKIVTFKNST 62

Query: 171 LVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPL 230
           +  +P    +   ++  L LN  ++  ++   F    +++ L +  N +  LP  +F  +
Sbjct: 63  MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 122

Query: 231 SHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNV 290
             L  L L +N +S + +  F     L  L + +N L  +   +F     L  L++  N 
Sbjct: 123 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 182

Query: 291 FTTLADGAFNGLGRL 305
            T +       L   
Sbjct: 183 LTHVDLSLIPSLFHA 197

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  120 bits (302), Expect = 2e-30
 Identities = 32/166 (19%), Positives = 60/166 (36%)

Query: 147 RIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGL 206
             K +DS +Q+      V +                     +   ++ +  +        
Sbjct: 15  EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSF 74

Query: 207 KSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQ 266
           + +++LNL    +E++    FA    +++L +G N I  +    F+ +  L +L L+ N 
Sbjct: 75  RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND 134

Query: 267 LRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG 312
           L S+P   F     L  L +  N    + D  F     L  L L  
Sbjct: 135 LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 180

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  118 bits (297), Expect = 8e-30
 Identities = 42/180 (23%), Positives = 74/180 (41%), Gaps = 11/180 (6%)

Query: 126 NLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKL 185
            L  + ++L PS+    + YN + T+   I    +++ +D SHN +  +         +L
Sbjct: 182 RLTHVDLSLIPSLFHANVSYNLLSTLAIPI----AVEELDASHNSINVVRGPVN---VEL 234

Query: 186 VELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISR 245
             L+L HN L+       +    L  ++L  N LE +    F  +  LE L +  NR+  
Sbjct: 235 TILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA 292

Query: 246 IDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRL 305
           ++    + +  L++L L  N L  V   +      L  L +  N   TL     + L  L
Sbjct: 293 LNLY-GQPIPTLKVLDLSHNHLLHVE-RNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNL 350

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  111 bits (279), Expect = 2e-27
 Identities = 44/183 (24%), Positives = 71/183 (38%), Gaps = 14/183 (7%)

Query: 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKL 195
            S+Q L L  NR+  VD  +    SL H ++S+N L  +          + EL  +HN +
Sbjct: 171 TSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLA-----IPIAVEELDASHNSI 223

Query: 196 SSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLT 255
           + V          L +L L+ N L D           L E+DL  N + +I    F  + 
Sbjct: 224 NVVRGPVN---VELTILKLQHNNLTDTAW--LLNYPGLVEVDLSYNELEKIMYHPFVKMQ 278

Query: 256 ALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGL 315
            L  LY+ +N+L ++       +  L  L +  N    +         RL  L L    +
Sbjct: 279 RLERLYISNNRLVALN-LYGQPIPTLKVLDLSHNHLLHVERNQPQ-FDRLENLYLDHNSI 336

Query: 316 TNM 318
             +
Sbjct: 337 VTL 339

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  109 bits (273), Expect = 1e-26
 Identities = 46/184 (25%), Positives = 70/184 (38%), Gaps = 14/184 (7%)

Query: 136 PSIQRLVLKYNRIKTVDSAI-QFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK 194
           P +  LVL+ N + ++   I      L  + +S+N L  I    F+    L  LQL+ N+
Sbjct: 123 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 182

Query: 195 LSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGL 254
           L+ V+        SL   N+  N L  L          +EELD   N I+ +       L
Sbjct: 183 LTHVDLSLI---PSLFHANVSYNLLSTLA-----IPIAVEELDASHNSINVVRGPVNVEL 234

Query: 255 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAG 314
           T   IL L  N L        +    L E+ +  N    +    F  + RL  L +    
Sbjct: 235 T---ILKLQHNNLTDTAW--LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 289

Query: 315 LTNM 318
           L  +
Sbjct: 290 LVAL 293

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 54.5 bits (131), Expect = 2e-08
 Identities = 25/177 (14%), Positives = 55/177 (31%), Gaps = 13/177 (7%)

Query: 126 NLDVIPITLN--PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQE 183
            L  + +     P+++ L L +N +  V+     +  L+++ L HN +V + +       
Sbjct: 289 RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTH---H 345

Query: 184 KLVELQLNHNKLSSVNNKT-FIGLKSLKVLNLRGNFLEDLP-------DRLFAPLSHLEE 235
            L  L L+HN     + +  F  +    V +   +   D              P      
Sbjct: 346 TLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLL 405

Query: 236 LDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFT 292
             +    +    Q      +A   +    +    +     + L    +L   +N   
Sbjct: 406 QYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELR 462

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  127 bits (320), Expect = 1e-32
 Identities = 53/205 (25%), Positives = 90/205 (43%), Gaps = 12/205 (5%)

Query: 125 ANLDVIPITLNPSIQRLVLKYNRIKTVDSAI---QFYSSLQHVDLSHNQLVNIPIRGFEP 181
           +      + L   I      ++ IK  D         SS++H+DLSH  + ++  R FE 
Sbjct: 229 SKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFET 288

Query: 182 QEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQN 241
            + L  L L +NK++ + ++ F GL +L+VLNL  N L +L    F  L  +  +DL +N
Sbjct: 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348

Query: 242 RISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNG 301
            I+ I    F+ L  L+ L L DN L ++      ++  + ++ +  N   TL       
Sbjct: 349 HIAIIQDQTFKFLEKLQTLDLRDNALTTIH-----FIPSIPDIFLSGNKLVTLPKINLT- 402

Query: 302 LGRLSALDLRGAGLTNMMGHSMALG 326
               + + L    L N+      L 
Sbjct: 403 ---ANLIHLSENRLENLDILYFLLR 424

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  111 bits (278), Expect = 4e-27
 Identities = 54/237 (22%), Positives = 91/237 (38%), Gaps = 39/237 (16%)

Query: 113 CNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS------------------- 153
           C+ +  +   +  NL  +P  L  + +RL+L +N I+TV +                   
Sbjct: 2   CSFDGRIAFYRFCNLTQVPQVL-NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT 60

Query: 154 -------AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSS--VNNKTFI 204
                  A +   +L+ +DL  +++  +    F+    L EL+L    LS   + +  F 
Sbjct: 61  PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120

Query: 205 GLKSLKVLNLRGNFLEDLPDR-LFAPLSHLEELDLGQNRISRIDQACFEGLTA--LRILY 261
            LK+L  L+L  N +  L     F  L+ L+ +D   N+I  + +   E L    L    
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180

Query: 262 LDDNQLRSVPTPSFIYLGM------LAELRVGLNVFTTLADGAF-NGLGRLSALDLR 311
           L  N L S  +  +           L  L V  N +T    G F N + +  A  L 
Sbjct: 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI 237

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  106 bits (267), Expect = 1e-25
 Identities = 52/178 (29%), Positives = 75/178 (42%), Gaps = 12/178 (6%)

Query: 132 ITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQ-EKLVELQL 190
           I   PSI  + L  N++ T+        +   + LS N+L N+ I  F  +   L  L L
Sbjct: 377 IHFIPSIPDIFLSGNKLVTLPK---INLTANLIHLSENRLENLDILYFLLRVPHLQILIL 433

Query: 191 NHNKLSSV-NNKTFIGLKSLKVLNLRGNFLED-----LPDRLFAPLSHLEELDLGQNRIS 244
           N N+ SS   ++T     SL+ L L  N L+      L   +F  LSHL+ L L  N ++
Sbjct: 434 NQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN 493

Query: 245 RIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGL 302
            +    F  LTALR L L+ N+L  +          L  L +  N         F  L
Sbjct: 494 SLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPDVFVSL 549

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  102 bits (256), Expect = 3e-24
 Identities = 36/164 (21%), Positives = 60/164 (36%), Gaps = 8/164 (4%)

Query: 158 YSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGN 217
               +        L  +P    +       L L+ N + +V   +F  L+ L++L L   
Sbjct: 3   SFDGRIAFYRFCNLTQVP----QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQ 58

Query: 218 FLE-DLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRS--VPTPS 274
           +    +    F  L +L  LDLG ++I  +    F+GL  L  L L    L    +    
Sbjct: 59  YTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGY 118

Query: 275 FIYLGMLAELRVGLNVFTTL-ADGAFNGLGRLSALDLRGAGLTN 317
           F  L  L  L +  N   +L    +F  L  L ++D     +  
Sbjct: 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  101 bits (253), Expect = 7e-24
 Identities = 49/190 (25%), Positives = 76/190 (40%), Gaps = 17/190 (8%)

Query: 136 PSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK 194
           P +  + L+ N I  +     +F   LQ +DL  N L  I          + ++ L+ NK
Sbjct: 338 PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF-----IPSIPDIFLSGNK 392

Query: 195 LSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLF-APLSHLEELDLGQNRISRID-QACFE 252
           L ++         +  +++L  N LE+L    F   + HL+ L L QNR S         
Sbjct: 393 LVTLPKINL----TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS 448

Query: 253 GLTALRILYLDDNQLR-----SVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSA 307
              +L  L+L +N L+      +    F  L  L  L +  N   +L  G F+ L  L  
Sbjct: 449 ENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRG 508

Query: 308 LDLRGAGLTN 317
           L L    LT 
Sbjct: 509 LSLNSNRLTV 518

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 99.5 bits (248), Expect = 4e-23
 Identities = 41/191 (21%), Positives = 82/191 (42%), Gaps = 14/191 (7%)

Query: 136 PSIQRLVLKYNRIKTVDSAIQFY--SSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN 193
             ++ L L YN+I  +     FY   +LQ ++LS+N L  +    F    K+  + L  N
Sbjct: 290 KDLKVLNLAYNKINKIADEA-FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348

Query: 194 KLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEG 253
            ++ + ++TF  L+ L+ L+LR N L  +       +  + ++ L  N++  + +     
Sbjct: 349 HIAIIQDQTFKFLEKLQTLDLRDNALTTIHF-----IPSIPDIFLSGNKLVTLPKINL-- 401

Query: 254 LTALRILYLDDNQLRSVPTPSFI-YLGMLAELRVGLNVFTTL-ADGAFNGLGRLSALDLR 311
                +++L +N+L ++    F+  +  L  L +  N F++   D   +    L  L L 
Sbjct: 402 --TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLG 459

Query: 312 GAGLTNMMGHS 322
              L       
Sbjct: 460 ENMLQLAWETE 470

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 93.3 bits (232), Expect = 3e-21
 Identities = 48/191 (25%), Positives = 78/191 (40%), Gaps = 17/191 (8%)

Query: 136 PSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK 194
            ++Q L L YN +  + S        + ++DL  N +  I  + F+  EKL  L L  N 
Sbjct: 314 DNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373

Query: 195 LSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID-QACFEG 253
           L++++      + S+  + L GN L  LP            + L +NR+  +D       
Sbjct: 374 LTTIHF-----IPSIPDIFLSGNKLVTLPKINLT----ANLIHLSENRLENLDILYFLLR 424

Query: 254 LTALRILYLDDNQLRSVPTPS-FIYLGMLAELRVGLNVF-----TTLADGAFNGLGRLSA 307
           +  L+IL L+ N+  S            L +L +G N+      T L    F GL  L  
Sbjct: 425 VPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQV 484

Query: 308 LDLRGAGLTNM 318
           L L    L ++
Sbjct: 485 LYLNHNYLNSL 495

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 82.9 bits (205), Expect = 1e-17
 Identities = 41/150 (27%), Positives = 66/150 (44%), Gaps = 13/150 (8%)

Query: 126 NLDVIPITLN-PSIQRLVLKYNRIKTVDSAIQFY--SSLQHVDLSHNQL-----VNIPIR 177
           NLD++   L  P +Q L+L  NR  +           SL+ + L  N L       +   
Sbjct: 415 NLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWD 474

Query: 178 GFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELD 237
            FE    L  L LNHN L+S+    F  L +L+ L+L  N L  L        ++LE LD
Sbjct: 475 VFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILD 532

Query: 238 LGQNRISRIDQACFEGLTALRILYLDDNQL 267
           + +N++   +    +   +L +L +  N+ 
Sbjct: 533 ISRNQLLAPNP---DVFVSLSVLDITHNKF 559

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 72.5 bits (178), Expect = 4e-14
 Identities = 30/139 (21%), Positives = 47/139 (33%), Gaps = 29/139 (20%)

Query: 190 LNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISR-IDQ 248
                L+ V       L + + L L  N++  +    F  L  L+ L+LG       ID+
Sbjct: 11  YRFCNLTQV----PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDK 66

Query: 249 ACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSAL 308
             F  L  LRIL L  +++  +                           AF GL  L  L
Sbjct: 67  EAFRNLPNLRILDLGSSKIYFLH------------------------PDAFQGLFHLFEL 102

Query: 309 DLRGAGLTNMMGHSMALGD 327
            L   GL++ +       +
Sbjct: 103 RLYFCGLSDAVLKDGYFRN 121

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 66.0 bits (161), Expect = 4e-12
 Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 11/118 (9%)

Query: 133 TLNPSIQRLVLKYNRIKTVD------SAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLV 186
           + NPS+++L L  N ++            +  S LQ + L+HN L ++P   F     L 
Sbjct: 448 SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALR 507

Query: 187 ELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRIS 244
            L LN N+L+ +++       +L++L++  N L      +F     L  LD+  N+  
Sbjct: 508 GLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFI 560

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  124 bits (314), Expect = 7e-32
 Identities = 49/178 (27%), Positives = 76/178 (42%), Gaps = 4/178 (2%)

Query: 137 SIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLS 196
           S +     + ++  V   +   +++  ++L+HNQL  +P   F    +L  L +  N +S
Sbjct: 5   SHEVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62

Query: 197 SVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTA 256
            +  +    L  LKVLNL+ N L  L D+ FA  ++L EL L  N I +I    F     
Sbjct: 63  KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122

Query: 257 LRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLG--RLSALDLRG 312
           L  L L  N L S    + + L  L EL +  N    L     +      L  L+L  
Sbjct: 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  119 bits (301), Expect = 4e-30
 Identities = 51/189 (26%), Positives = 86/189 (45%), Gaps = 8/189 (4%)

Query: 136 PSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK 194
           P ++ L L++N +  + D    F ++L  + L  N +  I    F  Q+ L+ L L+HN 
Sbjct: 73  PMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG 132

Query: 195 LSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFA--PLSHLEELDLGQNRISRIDQACFE 252
           LSS    T + L++L+ L L  N ++ L          S L++L+L  N+I      CF 
Sbjct: 133 LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH 192

Query: 253 GLTALRILYLDDNQLRSVPTPSF---IYLGMLAELRVGLNVFTTLADGAFNGLG--RLSA 307
            +  L  L+L++ QL    T      +    +  L +  +  +T ++  F GL    L+ 
Sbjct: 193 AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTM 252

Query: 308 LDLRGAGLT 316
           LDL    L 
Sbjct: 253 LDLSYNNLN 261

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  117 bits (295), Expect = 2e-29
 Identities = 45/191 (23%), Positives = 84/191 (43%), Gaps = 8/191 (4%)

Query: 136 PSIQRLVLKYNRIKTVD-SAIQFYSSLQHVDLSHN--QLVNIPIRGFE--PQEKLVELQL 190
             ++ L ++ N I  +  +      +L+++ LS++   L  +    F       L  L L
Sbjct: 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNL 388

Query: 191 NHNKLSSVNNKTFIGLKSLKVLNLRGNFLE-DLPDRLFAPLSHLEELDLGQNRISRIDQA 249
             NK+S + +  F  L  L+VL+L  N +  +L  + +  L ++ E+ L  N+  ++ + 
Sbjct: 389 TKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRN 448

Query: 250 CFEGLTALRILYLDDNQLRSVP--TPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSA 307
            F  + +L+ L L    L++V      F  L  L  L +  N    + D    GL +L  
Sbjct: 449 SFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEI 508

Query: 308 LDLRGAGLTNM 318
           LDL+   L  +
Sbjct: 509 LDLQHNNLARL 519

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  116 bits (292), Expect = 6e-29
 Identities = 52/193 (26%), Positives = 80/193 (41%), Gaps = 15/193 (7%)

Query: 135 NPSIQRLVLKYNRIKTVD-SAIQFYSSLQHVDLSHNQLVNIPIRGFEPQE---KLVELQL 190
           N S+++L L  N+IK            L  + L++ QL          +     +  L L
Sbjct: 170 NSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSL 229

Query: 191 NHNKLSSVNNKTFIGLK--SLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQ 248
           ++++LS+ +N TF+GLK  +L +L+L  N L  + +  FA L  LE   L  N I  +  
Sbjct: 230 SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS 289

Query: 249 ACFEGLTALRILYLDDN---------QLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAF 299
               GL  +R L L  +          L  +   SF +L  L  L +  N    +    F
Sbjct: 290 HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF 349

Query: 300 NGLGRLSALDLRG 312
            GL  L  L L  
Sbjct: 350 TGLINLKYLSLSN 362

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  115 bits (291), Expect = 9e-29
 Identities = 52/189 (27%), Positives = 84/189 (44%), Gaps = 12/189 (6%)

Query: 136 PSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRG--FEPQEKLVELQLNH 192
            +I  + L YN+   +   +     SLQ + L    L N+      F+P   L  L L++
Sbjct: 430 ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489

Query: 193 NKLSSVNNKTFIGLKSLKVLNLRGNFLEDL--------PDRLFAPLSHLEELDLGQNRIS 244
           N ++++N+    GL+ L++L+L+ N L  L        P      LSHL  L+L  N   
Sbjct: 490 NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD 549

Query: 245 RIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAF-NGLG 303
            I    F+ L  L+I+ L  N L ++P   F     L  L +  N+ T++    F     
Sbjct: 550 EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFR 609

Query: 304 RLSALDLRG 312
            L+ LD+R 
Sbjct: 610 NLTELDMRF 618

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  112 bits (283), Expect = 9e-28
 Identities = 55/170 (32%), Positives = 80/170 (47%), Gaps = 12/170 (7%)

Query: 135 NPSIQRLVLKYNRIKTVD---SAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLN 191
            PS+QRL+L+   +K VD   S  Q   +L  +DLS+N + NI     E  EKL  L L 
Sbjct: 453 VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQ 512

Query: 192 HNKLSSVNNKTFIG--------LKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRI 243
           HN L+ +      G        L  L +LNL  N  +++P  +F  L  L+ +DLG N +
Sbjct: 513 HNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNL 572

Query: 244 SRIDQACFEGLTALRILYLDDNQLRSVPTPSFIY-LGMLAELRVGLNVFT 292
           + +  + F    +L+ L L  N + SV    F      L EL +  N F 
Sbjct: 573 NTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  112 bits (283), Expect = 1e-27
 Identities = 43/190 (22%), Positives = 79/190 (41%), Gaps = 8/190 (4%)

Query: 136 PSIQRLVLKYNRIKTVD-SAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK 194
            ++  L L  N I+ +  +      +L  +DLSHN L +  +      E L EL L++NK
Sbjct: 97  TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK 156

Query: 195 LSSVNNKTF--IGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQA--- 249
           + ++ ++        SLK L L  N +++     F  +  L  L L   ++         
Sbjct: 157 IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLC 216

Query: 250 CFEGLTALRILYLDDNQLRSVPTPSFIYLGM--LAELRVGLNVFTTLADGAFNGLGRLSA 307
                T++R L L ++QL +    +F+ L    L  L +  N    + + +F  L +L  
Sbjct: 217 LELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEY 276

Query: 308 LDLRGAGLTN 317
             L    + +
Sbjct: 277 FFLEYNNIQH 286

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  107 bits (270), Expect = 4e-26
 Identities = 43/193 (22%), Positives = 81/193 (41%), Gaps = 15/193 (7%)

Query: 135 NPSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN 193
             ++  L L YN +  V + +  +   L++  L +N + ++          +  L L  +
Sbjct: 247 WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306

Query: 194 ---------KLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRIS 244
                     L  +++ +F  LK L+ LN+  N +  +   +F  L +L+ L L  +  S
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366

Query: 245 --RIDQACFEGL--TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTT-LADGAF 299
              +    F  L  + L IL L  N++  + + +F +LG L  L +GLN     L    +
Sbjct: 367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW 426

Query: 300 NGLGRLSALDLRG 312
            GL  +  + L  
Sbjct: 427 RGLENIFEIYLSY 439

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 78.9 bits (195), Expect = 2e-16
 Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 3/110 (2%)

Query: 208 SLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQL 267
           S +V +     L  +PD L    +++  L+L  N++ R+  A F   + L  L +  N +
Sbjct: 5   SHEVADCSHLKLTQVPDDLP---TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 268 RSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN 317
             +       L ML  L +  N  + L+D  F     L+ L L    +  
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK 111

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score =  118 bits (298), Expect = 8e-32
 Identities = 59/186 (31%), Positives = 93/186 (50%), Gaps = 3/186 (1%)

Query: 107 CPPD--CDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQH 163
           C     C CN+    V C+  +LD +P  +    ++L L+   + T+     +  + L  
Sbjct: 4   CETVTGCTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTW 63

Query: 164 VDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLP 223
           ++L +NQL  +    F+   +L  L L +N+L+S+    F  L  L  L L GN L+ LP
Sbjct: 64  LNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLP 123

Query: 224 DRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAE 283
             +F  L+ L+EL L  N++  I    F+ LT L+ L L  NQL+SVP  +F  LG L  
Sbjct: 124 SGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQT 183

Query: 284 LRVGLN 289
           + +  N
Sbjct: 184 ITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 97.1 bits (242), Expect = 9e-24
 Identities = 47/130 (36%), Positives = 68/130 (52%)

Query: 187 ELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRI 246
           +L L    L+++++ TF GL  L  LNL  N L+ L   +F  L+ L  L L  N+++ +
Sbjct: 39  KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98

Query: 247 DQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLS 306
               F+ LT L  LYL  NQL+S+P+  F  L  L ELR+  N   ++  GAF+ L  L 
Sbjct: 99  PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158

Query: 307 ALDLRGAGLT 316
            L L    L 
Sbjct: 159 TLSLSTNQLQ 168

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 74.3 bits (183), Expect = 1e-15
 Identities = 35/103 (33%), Positives = 52/103 (50%)

Query: 210 KVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRS 269
           + L+L+   L  L D  F  L+ L  L+L  N++  +    F+ LT L  L L +NQL S
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97

Query: 270 VPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG 312
           +P   F +L  L +L +G N   +L  G F+ L +L  L L  
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT 140

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score =  115 bits (290), Expect = 1e-30
 Identities = 45/236 (19%), Positives = 83/236 (35%), Gaps = 35/236 (14%)

Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVD 165
             P C+C+ E         ++  IP +L PS Q L L    ++T+ S A     ++  + 
Sbjct: 4   SSPPCECHQEE-DFRVTCKDIQRIP-SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIY 61

Query: 166 LSHN-QLVNIPIRGFEPQEKLVELQLNHNK-LSSVNNKTFIGLKSLKVLNLRGN------ 217
           +S +  L  +    F    K+  +++ + + L+ ++      L  LK L +         
Sbjct: 62  VSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFP 121

Query: 218 --------------------FLEDLPDRLFAPL-SHLEELDLGQNRISRIDQACFEGLTA 256
                               ++  +P   F  L +    L L  N  + +    F G   
Sbjct: 122 DLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTK- 180

Query: 257 LRILYLDDNQ-LRSVPTPSFIYLG-MLAELRVGLNVFTTLADGAFNGLGRLSALDL 310
           L  +YL+ N+ L  +   +F  +    + L V     T L       L  L A + 
Sbjct: 181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 99.3 bits (248), Expect = 1e-24
 Identities = 32/164 (19%), Positives = 66/164 (40%), Gaps = 9/164 (5%)

Query: 159 SSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNF 218
              +   ++   +  IP            L+L    L ++ +  F  L ++  + +  + 
Sbjct: 11  HQEEDFRVTCKDIQRIP----SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV 66

Query: 219 -LEDLPDRLFAPLSHLEELDLGQNR-ISRIDQACFEGLTALRILYLDDNQLRSVPTPSFI 276
            L+ L    F  LS +  +++   R ++ ID    + L  L+ L + +  L+  P  + +
Sbjct: 67  TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKV 126

Query: 277 Y-LGMLAELRVGLNVF-TTLADGAFNGLGRLSA-LDLRGAGLTN 317
           Y   +   L +  N + T++   AF GL   +  L L   G T+
Sbjct: 127 YSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS 170

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 65.4 bits (160), Expect = 1e-12
 Identities = 18/113 (15%), Positives = 38/113 (33%), Gaps = 6/113 (5%)

Query: 208 SLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDN-Q 266
             +   +    ++ +P          + L L +  +  I    F  L  +  +Y+  +  
Sbjct: 12  QEEDFRVTCKDIQRIPS----LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVT 67

Query: 267 LRSVPTPSFIYLGMLAELRVGLN-VFTTLADGAFNGLGRLSALDLRGAGLTNM 318
           L+ + + SF  L  +  + +      T +   A   L  L  L +   GL   
Sbjct: 68  LQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMF 120

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  113 bits (286), Expect = 2e-29
 Identities = 39/184 (21%), Positives = 73/184 (39%), Gaps = 12/184 (6%)

Query: 136 PSIQRLVLKYNRIKTVD-SAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK 194
              +   +  + +K    S  Q   +++ +DLS N L  I      P  KL  L L+ N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 195 LSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGL 254
           L    +     L +L+ L+L  N++++L          +E L    N ISR+  +  +G 
Sbjct: 70  LYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCSRGQG- 121

Query: 255 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNG-LGRLSALDLRGA 313
              + +YL +N++  +          +  L + LN   T+           L  L+L+  
Sbjct: 122 --KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 314 GLTN 317
            + +
Sbjct: 180 FIYD 183

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  112 bits (283), Expect = 4e-29
 Identities = 32/165 (19%), Positives = 59/165 (35%), Gaps = 10/165 (6%)

Query: 159 SSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNF 218
           +  +   ++ + L        +    + EL L+ N LS ++         L++LNL  N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 219 LEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYL 278
           L +  D     LS L  LDL  N +  +         ++  L+  +N +  V        
Sbjct: 70  LYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSCSRGQ-- 120

Query: 279 GMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSM 323
                + +  N  T L D       R+  LDL+   +  +    +
Sbjct: 121 -GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  111 bits (279), Expect = 2e-28
 Identities = 35/182 (19%), Positives = 79/182 (43%), Gaps = 8/182 (4%)

Query: 132 ITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLN 191
           + + PSI+ L    N I  V  +       +++ L++N++  +       + ++  L L 
Sbjct: 95  LLVGPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152

Query: 192 HNKLSSVNNKTFIG-LKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQAC 250
            N++ +VN         +L+ LNL+ NF+ D+  ++    + L+ LDL  N+++ +    
Sbjct: 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPE- 209

Query: 251 FEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGA-FNGLGRLSALD 309
           F+    +  + L +N+L  +   +  +   L    +  N F        F+   R+  + 
Sbjct: 210 FQSAAGVTWISLRNNKLVLIE-KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268

Query: 310 LR 311
            +
Sbjct: 269 KQ 270

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  109 bits (275), Expect = 7e-28
 Identities = 35/183 (19%), Positives = 64/183 (34%), Gaps = 13/183 (7%)

Query: 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKL 195
             ++ L L  N +      ++  S+L+ +DL++N +  +          +  L   +N +
Sbjct: 58  TKLELLNLSSNVLYET-LDLESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNI 111

Query: 196 SSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID-QACFEGL 254
           S V+       +  K + L  N +  L D      S ++ LDL  N I  ++        
Sbjct: 112 SRVSCSRG---QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168

Query: 255 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAG 314
             L  L L  N +  V          L  L +  N    +    F     ++ + LR   
Sbjct: 169 DTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNK 225

Query: 315 LTN 317
           L  
Sbjct: 226 LVL 228

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  109 bits (274), Expect = 9e-28
 Identities = 31/179 (17%), Positives = 65/179 (36%), Gaps = 14/179 (7%)

Query: 136 PSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK 194
            +++ L L  N +  +  + +  ++ L+ ++LS N L        E    L  L LN+N 
Sbjct: 34  WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--DLESLSTLRTLDLNNNY 91

Query: 195 LSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGL 254
           +  +         S++ L+   N +  +           + + L  N+I+ +        
Sbjct: 92  VQELLV-----GPSIETLHAANNNISRVSCSRG---QGKKNIYLANNKITMLRDLDEGCR 143

Query: 255 TALRILYLDDNQLRSVPTPSFI-YLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG 312
           + ++ L L  N++ +V           L  L +  N    +         +L  LDL  
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSS 200

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  106 bits (267), Expect = 1e-26
 Identities = 32/176 (18%), Positives = 59/176 (33%), Gaps = 7/176 (3%)

Query: 126 NLDVIPITLNPSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQ-E 183
           N+  +  +     + + L  N+I  + D      S +Q++DL  N++  +         +
Sbjct: 110 NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 184 KLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRI 243
            L  L L +N +  V  +       LK L+L  N L  +    F   + +  + L  N++
Sbjct: 170 TLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKL 226

Query: 244 SRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAF 299
             I++A       L    L  N         F +        V       L     
Sbjct: 227 VLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNE 280

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 79.6 bits (197), Expect = 4e-17
 Identities = 23/110 (20%), Positives = 35/110 (31%), Gaps = 7/110 (6%)

Query: 203 FIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYL 262
                  K+  +  + L+     L     +++ELDL  N +S+I  A     T L +L L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 263 DDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG 312
             N L          L  L  L +  N    L          +  L    
Sbjct: 66  SSNVLYET--LDLESLSTLRTLDLNNNYVQELL-----VGPSIETLHAAN 108

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 62.3 bits (152), Expect = 3e-11
 Identities = 14/87 (16%), Positives = 27/87 (31%), Gaps = 2/87 (2%)

Query: 226 LFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELR 285
           +    +  +   +  + + +   +  +    ++ L L  N L  +          L  L 
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 286 VGLNVFTTLADGAFNGLGRLSALDLRG 312
           +  NV     D     L  L  LDL  
Sbjct: 65  LSSNVLYETLD--LESLSTLRTLDLNN 89

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 20/138 (14%), Positives = 46/138 (33%), Gaps = 3/138 (2%)

Query: 126 NLDVIPITLN-PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEK 184
            +  +   +    ++ L L  N++  +    Q  + +  + L +N+LV I  +     + 
Sbjct: 180 FIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE-KALRFSQN 238

Query: 185 LVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRIS 244
           L    L  N       + F   K+ +V  +    ++ L  +     +       G     
Sbjct: 239 LEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCE 297

Query: 245 RIDQACFEGLTALRILYL 262
            +     + L AL   + 
Sbjct: 298 DLPAPFADRLIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 10/67 (14%), Positives = 22/67 (32%)

Query: 251 FEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDL 310
            +     +I  + D+ L+            + EL +  N  + ++        +L  L+L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 311 RGAGLTN 317
               L  
Sbjct: 66  SSNVLYE 72

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  116 bits (292), Expect = 5e-29
 Identities = 35/205 (17%), Positives = 78/205 (38%), Gaps = 19/205 (9%)

Query: 126 NLDVIPITLN----PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEP 181
           NL+  P + +      +  L   +N+++ +++       L  + L +NQ+  IP      
Sbjct: 559 NLEEFPASASLQKMVKLGLLDCVHNKVRHLEA-FGTNVKLTDLKLDYNQIEEIPEDFCAF 617

Query: 182 QEKLVELQLNHNKLSSVNNKTFIG-LKSLKVLNLRGNFLEDLPDRLFAPLS-----HLEE 235
            +++  L  +HNKL  + N      +  +  ++   N +      +   +      +   
Sbjct: 618 TDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAST 677

Query: 236 LDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVP-------TPSFIYLGMLAELRVGL 288
           + L  N I +     F   + +  + L +N + S+P         ++    +L  + +  
Sbjct: 678 VTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRF 737

Query: 289 NVFTTL-ADGAFNGLGRLSALDLRG 312
           N  T+L  D     L  LS +D+  
Sbjct: 738 NKLTSLSDDFRATTLPYLSNMDVSY 762

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  105 bits (263), Expect = 3e-25
 Identities = 25/210 (11%), Positives = 65/210 (30%), Gaps = 21/210 (10%)

Query: 127 LDVIPITLN--PSIQRLVLK-YNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQE 183
            +   ++ +    +  + L     +  +   +     LQ ++++ N+ ++      +   
Sbjct: 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR 539

Query: 184 ---------KLVELQLNHNKLSSVNNKTFIG-LKSLKVLNLRGNFLEDLPDRLFAPLSHL 233
                    K+    + +N L        +  +  L +L+   N +  L    F     L
Sbjct: 540 LADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEA--FGTNVKL 597

Query: 234 EELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIY-LGMLAELRVGLNVFT 292
            +L L  N+I  I +        +  L    N+L+ +P       + ++  +    N   
Sbjct: 598 TDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIG 657

Query: 293 TLADGAFNGLG-----RLSALDLRGAGLTN 317
           +        +        S + L    +  
Sbjct: 658 SEGRNISCSMDDYKGINASTVTLSYNEIQK 687

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 98.4 bits (245), Expect = 8e-23
 Identities = 37/195 (18%), Positives = 68/195 (34%), Gaps = 19/195 (9%)

Query: 134 LNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN 193
           ++    ++    NRI  +  AIQ  + LQ +  +++                 +   ++ 
Sbjct: 423 ISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDN-----IAVDWEDANSDYA 477

Query: 194 KLSSVNNKTFIGLKSLKVLNLRG-NFLEDLPDRLFAPLSHLEELDLGQNRISRIDQAC-- 250
           K       ++  LK L  + L     +  LPD L+  L  L+ L++  NR     Q    
Sbjct: 478 KQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY-DLPELQSLNIACNRGISAAQLKAD 536

Query: 251 -------FEGLTALRILYLDDNQLRSVPTPSFI-YLGMLAELRVGLNVFTTLADGAFNGL 302
                   +    ++I Y+  N L   P  + +  +  L  L    N    L   AF   
Sbjct: 537 WTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHL--EAFGTN 594

Query: 303 GRLSALDLRGAGLTN 317
            +L+ L L    +  
Sbjct: 595 VKLTDLKLDYNQIEE 609

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 92.6 bits (230), Expect = 6e-21
 Identities = 37/202 (18%), Positives = 68/202 (33%), Gaps = 19/202 (9%)

Query: 137 SIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQE-------KLVEL 188
           +   + L YN I+          S +  + LS+N + +IP    +P++        L  +
Sbjct: 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTI 733

Query: 189 QLNHNKLSSV-NNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDL------GQN 241
            L  NKL+S+ ++     L  L  +++  N     P +     S L+   +        N
Sbjct: 734 DLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLN-SSQLKAFGIRHQRDAEGN 792

Query: 242 RISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNG 301
           RI R          +L  L +  N +R V          L  L +  N   ++   +   
Sbjct: 793 RILRQWPTGITTCPSLIQLQIGSNDIRKVD-EKL--TPQLYILDIADNPNISIDVTSVCP 849

Query: 302 LGRLSALDLRGAGLTNMMGHSM 323
                   L      ++ G   
Sbjct: 850 YIEAGMYVLLYDKTQDIRGCDA 871

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 73.4 bits (180), Expect = 2e-14
 Identities = 27/215 (12%), Positives = 59/215 (27%), Gaps = 37/215 (17%)

Query: 133 TLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNH 192
            L P +        R+      + +   L   DL  + +   P    +P +K   + L  
Sbjct: 370 ELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP--EMKPIKKDSRISLKD 427

Query: 193 NKLSSVNNK------TFIGLKSLKVLNLRGNFLEDLPDRL-------------------F 227
            ++ ++ N+          L  L+++    +        +                   +
Sbjct: 428 TQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSW 487

Query: 228 APLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVP---------TPSFIYL 278
           + L  L +++L               L  L+ L +  N+  S                  
Sbjct: 488 SNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTG 547

Query: 279 GMLAELRVGLNVFTTL-ADGAFNGLGRLSALDLRG 312
             +    +G N      A  +   + +L  LD   
Sbjct: 548 PKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVH 582

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.1 bits (117), Expect = 1e-06
 Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 4/83 (4%)

Query: 127 LDVIPITLN--PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEK 184
           L   P  +   PS+ +L +  N I+ VD  +     L  +D++ N  ++I +    P  +
Sbjct: 795 LRQWPTGITTCPSLIQLQIGSNDIRKVDEKL--TPQLYILDIADNPNISIDVTSVCPYIE 852

Query: 185 LVELQLNHNKLSSVNNKTFIGLK 207
                L ++K   +     +G++
Sbjct: 853 AGMYVLLYDKTQDIRGCDALGIE 875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 13/111 (11%), Positives = 33/111 (29%), Gaps = 4/111 (3%)

Query: 206 LKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDN 265
              +  L+L G   +         L+ L+ L  G +  +   +   +      +     +
Sbjct: 322 NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKH 381

Query: 266 QLRSVPTPSFI----YLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG 312
           ++R      F+     L +   L+  +N    +     +    L    +  
Sbjct: 382 RIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGN 432

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  112 bits (281), Expect = 7e-28
 Identities = 33/186 (17%), Positives = 73/186 (39%), Gaps = 12/186 (6%)

Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
           + + +    +++ L L  N ++     +    S++ +  ++N +  +        +    
Sbjct: 72  ETLDLESLSTLRTLDLNNNYVQE----LLVGPSIETLHAANNNISRVSCSRG---QGKKN 124

Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDR-LFAPLSHLEELDLGQNRISRI 246
           + L +NK++ + +        ++ L+L+ N ++ +    L A    LE L+L  N I  +
Sbjct: 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184

Query: 247 DQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLS 306
                     L+ L L  N+L  +  P F     +  + +  N    + + A      L 
Sbjct: 185 KGQVV--FAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVLI-EKALRFSQNLE 240

Query: 307 ALDLRG 312
             DLRG
Sbjct: 241 HFDLRG 246

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  110 bits (277), Expect = 3e-27
 Identities = 39/186 (20%), Positives = 73/186 (39%), Gaps = 12/186 (6%)

Query: 134 LNPSIQRLVLKYNRIKTVD-SAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNH 192
                +   +  + +K    S  Q   +++ +DLS N L  I      P  KL  L L+ 
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 193 NKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFE 252
           N L    +     L +L+ L+L  N++++L          +E L    N ISR+  +  +
Sbjct: 68  NVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCSRGQ 120

Query: 253 GLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAF-NGLGRLSALDLR 311
           G    + +YL +N++  +          +  L + LN   T+           L  L+L+
Sbjct: 121 G---KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 312 GAGLTN 317
              + +
Sbjct: 178 YNFIYD 183

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  109 bits (275), Expect = 5e-27
 Identities = 32/189 (16%), Positives = 59/189 (31%), Gaps = 7/189 (3%)

Query: 126 NLDVIPITLNPSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQ-E 183
           N+  +  +     + + L  N+I  + D      S +Q++DL  N++  +         +
Sbjct: 110 NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 184 KLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRI 243
            L  L L +N +  V  +       LK L+L  N L  +    F   + +  + L  N++
Sbjct: 170 TLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKL 226

Query: 244 SRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLG 303
             I++A       L    L  N         F          V       L         
Sbjct: 227 VLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVKKLTGQNEEECT 284

Query: 304 RLSALDLRG 312
             +      
Sbjct: 285 VPTLGHYGA 293

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  106 bits (266), Expect = 7e-26
 Identities = 31/179 (17%), Positives = 65/179 (36%), Gaps = 14/179 (7%)

Query: 136 PSIQRLVLKYNRIKTVD-SAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK 194
            +++ L L  N +  +  + +  ++ L+ ++LS N L        E    L  L LN+N 
Sbjct: 34  WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--DLESLSTLRTLDLNNNY 91

Query: 195 LSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGL 254
           +  +         S++ L+   N +  +           + + L  N+I+ +        
Sbjct: 92  VQELLV-----GPSIETLHAANNNISRVSCSRG---QGKKNIYLANNKITMLRDLDEGCR 143

Query: 255 TALRILYLDDNQLRSVPTPSFI-YLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG 312
           + ++ L L  N++ +V           L  L +  N    +         +L  LDL  
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSS 200

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 93.4 bits (232), Expect = 3e-21
 Identities = 36/185 (19%), Positives = 65/185 (35%), Gaps = 7/185 (3%)

Query: 136 PSIQRLVLKYNRIKTVDSAIQFYS--SLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN 193
             +Q L LK N I TV+ A    S  +L+H++L +N + ++  +    +  L  L L+ N
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAK--LKTLDLSSN 201

Query: 194 KLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEG 253
           KL+ +    F     +  ++LR N L  +         +LE  DL  N         F  
Sbjct: 202 KLAFM-GPEFQSAAGVTWISLRNNKLVLIEK-ALRFSQNLEHFDLRGNGFHCGTLRDF-F 258

Query: 254 LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGA 313
               R+  +    ++ +   +     +      G      L     + L  L   +    
Sbjct: 259 SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALL 318

Query: 314 GLTNM 318
                
Sbjct: 319 SGQGS 323

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 87.6 bits (217), Expect = 2e-19
 Identities = 26/199 (13%), Positives = 61/199 (30%), Gaps = 9/199 (4%)

Query: 126 NLDVIPITLN-PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEK 184
            +  +   +    ++ L L  N++  +    Q  + +  + L +N+LV I  +     + 
Sbjct: 180 FIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE-KALRFSQN 238

Query: 185 LVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRIS 244
           L    L  N       + F   K+ +V  +    ++ L  +     +       G     
Sbjct: 239 LEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCE 297

Query: 245 RIDQACFEGLTALR-----ILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAF 299
            +     + L AL+     +L    ++   +            E+      + T+ D   
Sbjct: 298 DLPAPFADRLIALKRKEHALLSGQGSETERLECERE-NQARQREIDALKEQYRTVIDQVT 356

Query: 300 NGLGRLSALDLRGAGLTNM 318
                   L+ +   L   
Sbjct: 357 LRKQAKITLEQKKKALDEQ 375

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 77.6 bits (191), Expect = 5e-16
 Identities = 23/110 (20%), Positives = 35/110 (31%), Gaps = 7/110 (6%)

Query: 203 FIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYL 262
                  K+  +  + L+     L     +++ELDL  N +S+I  A     T L +L L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 263 DDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG 312
             N L          L  L  L +  N    L          +  L    
Sbjct: 66  SSNVLYET--LDLESLSTLRTLDLNNNYVQELL-----VGPSIETLHAAN 108

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 61.0 bits (148), Expect = 2e-10
 Identities = 10/215 (4%), Positives = 41/215 (19%), Gaps = 28/215 (13%)

Query: 132 ITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLN 191
           +  + +++   L+ N          F  + +   ++   +  +  +  E           
Sbjct: 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYG 292

Query: 192 HNKLSSVNNKTFIGLK----------------------------SLKVLNLRGNFLEDLP 223
                 +       L                               + ++        + 
Sbjct: 293 AYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVI 352

Query: 224 DRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAE 283
           D++         L+  +  +             L            +   +     +   
Sbjct: 353 DQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLL 412

Query: 284 LRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNM 318
             +         +        +   D+     T +
Sbjct: 413 RAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQL 447

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 60.6 bits (147), Expect = 2e-10
 Identities = 14/87 (16%), Positives = 27/87 (31%), Gaps = 2/87 (2%)

Query: 226 LFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELR 285
           +    +  +   +  + + +   +  +    ++ L L  N L  +          L  L 
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 286 VGLNVFTTLADGAFNGLGRLSALDLRG 312
           +  NV     D     L  L  LDL  
Sbjct: 65  LSSNVLYETLD--LESLSTLRTLDLNN 89

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 55.6 bits (134), Expect = 8e-09
 Identities = 14/146 (9%), Positives = 40/146 (27%), Gaps = 2/146 (1%)

Query: 127 LDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLV 186
            D +          L  + +  + ++   +  +  + +D    Q   +  +    ++  +
Sbjct: 304 ADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKI 363

Query: 187 ELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRIS-R 245
            L+     L    +        L     +     +L        S L+ L     R    
Sbjct: 364 TLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQ-HATEEQSPLQLLRAIVKRYEEM 422

Query: 246 IDQACFEGLTALRILYLDDNQLRSVP 271
             +       A+R   +  ++   + 
Sbjct: 423 YVEQQSVQNNAIRDWDMYQHKETQLA 448

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score =  105 bits (264), Expect = 1e-26
 Identities = 51/192 (26%), Positives = 86/192 (44%), Gaps = 5/192 (2%)

Query: 120 VTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGF 179
           +T       + P        +  LK   +          +S+  +  +++ + ++   G 
Sbjct: 3   ITVSTPIKQIFPDDAFAETIKANLKKKSVTDA-VTQNELNSIDQIIANNSDIKSVQ--GI 59

Query: 180 EPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLG 239
           +    +  L L  NKL  +       L +L  L L GN L+ LP+ +F  L++L+EL L 
Sbjct: 60  QYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117

Query: 240 QNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAF 299
           +N++  +    F+ LT L  L L  NQL+S+P   F  L  L EL +  N   +L +G F
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVF 177

Query: 300 NGLGRLSALDLR 311
           + L +L  L L 
Sbjct: 178 DKLTQLKDLRLY 189

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 97.0 bits (242), Expect = 1e-23
 Identities = 54/155 (34%), Positives = 85/155 (54%), Gaps = 3/155 (1%)

Query: 127 LDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLV 186
           +  I    N  ++ L L  N++  + SA++  ++L ++ L+ NQL ++P   F+    L 
Sbjct: 56  VQGIQYLPN--VRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112

Query: 187 ELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRI 246
           EL L  N+L S+ +  F  L +L  LNL  N L+ LP  +F  L++L ELDL  N++  +
Sbjct: 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL 172

Query: 247 DQACFEGLTALRILYLDDNQLRSVPTPSFIYLGML 281
            +  F+ LT L+ L L  NQL+SVP   F  L  L
Sbjct: 173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 207

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 72.0 bits (177), Expect = 1e-14
 Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 6/130 (4%)

Query: 187 ELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRI 246
           +  L    ++     T   L S+  +    + ++ +       L ++  L LG N++  I
Sbjct: 23  KANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHDI 78

Query: 247 DQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLS 306
             +  + LT L  L L  NQL+S+P   F  L  L EL +  N   +L DG F+ L  L+
Sbjct: 79  --SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136

Query: 307 ALDLRGAGLT 316
            L+L    L 
Sbjct: 137 YLNLAHNQLQ 146

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 35/105 (33%), Positives = 60/105 (57%), Gaps = 3/105 (2%)

Query: 139 QRLVLKYNRIKTVDSAIQFYS--SLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLS 196
           + LVL  N+++++   + F    +L +++L+HNQL ++P   F+    L EL L++N+L 
Sbjct: 112 KELVLVENQLQSLPDGV-FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ 170

Query: 197 SVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQN 241
           S+    F  L  LK L L  N L+ +PD +F  L+ L+ + L  N
Sbjct: 171 SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 99.4 bits (248), Expect = 4e-25
 Identities = 55/175 (31%), Positives = 75/175 (42%), Gaps = 25/175 (14%)

Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDL 166
           CP  C C+  T  V C       +P  +      L L+ N                    
Sbjct: 1   CPSRCSCSGTT--VECYSQGRTSVPTGIPAQTTYLDLETN-------------------- 38

Query: 167 SHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRL 226
               L ++P   F+    L +L L  NKL S+ N  F  L SL  LNL  N L+ LP+ +
Sbjct: 39  ---SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGV 95

Query: 227 FAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGML 281
           F  L+ L+EL L  N++  +    F+ LT L+ L L  NQL+SVP   F  L  L
Sbjct: 96  FDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 87.8 bits (218), Expect = 8e-21
 Identities = 49/154 (31%), Positives = 72/154 (46%), Gaps = 3/154 (1%)

Query: 159 SSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNF 218
            S   V+       ++P         L    L  N L S+ N  F  L SL  L L GN 
Sbjct: 7   CSGTTVECYSQGRTSVPTGIPAQTTYL---DLETNSLKSLPNGVFDELTSLTQLYLGGNK 63

Query: 219 LEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYL 278
           L+ LP+ +F  L+ L  L+L  N++  +    F+ LT L+ L L+ NQL+S+P   F  L
Sbjct: 64  LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKL 123

Query: 279 GMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG 312
             L +LR+  N   ++ DG F+ L  L  + L  
Sbjct: 124 TQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 157

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 97.8 bits (244), Expect = 1e-24
 Identities = 45/135 (33%), Positives = 71/135 (52%), Gaps = 2/135 (1%)

Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDL 166
           CP +C C D    V C    L V+P  +   +  L L  N+   V   +  Y  L  +DL
Sbjct: 4   CPTECTCLDTV--VRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDL 61

Query: 167 SHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRL 226
           S+N++  +  + F    +L+ L L++N+L  +  +TF GLKSL++L+L GN +  +P+  
Sbjct: 62  SNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGA 121

Query: 227 FAPLSHLEELDLGQN 241
           F  LS L  L +G N
Sbjct: 122 FNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 66.6 bits (163), Expect = 3e-13
 Identities = 35/103 (33%), Positives = 48/103 (46%), Gaps = 1/103 (0%)

Query: 210 KVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRS 269
             L L GN    +P    +   HL  +DL  NRIS +    F  +T L  L L  N+LR 
Sbjct: 34  TELYLDGNQFTLVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92

Query: 270 VPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG 312
           +P  +F  L  L  L +  N  + + +GAFN L  LS L +  
Sbjct: 93  IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGA 135

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  101 bits (254), Expect = 3e-24
 Identities = 43/211 (20%), Positives = 81/211 (38%), Gaps = 8/211 (3%)

Query: 118 LVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVD-SAIQFYSSLQHVDLSHNQLVNIPI 176
            +V   +  L  +P  L+     L +  N I  +  S I   S L+ + +SHN++  + I
Sbjct: 3   FLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI 62

Query: 177 RGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPD-RLFAPLSHLEE 235
             F+  ++L  L L+HNKL  ++        +LK L+L  N  + LP  + F  +S L+ 
Sbjct: 63  SVFKFNQELEYLDLSHNKLVKIS---CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKF 119

Query: 236 LDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTP---SFIYLGMLAELRVGLNVFT 292
           L L    + +        L   ++L +          P          L  +      F 
Sbjct: 120 LGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFH 179

Query: 293 TLADGAFNGLGRLSALDLRGAGLTNMMGHSM 323
            + D +   +  L   +++     N   + +
Sbjct: 180 FILDVSVKTVANLELSNIKCVLEDNKCSYFL 210

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 89.2 bits (221), Expect = 7e-20
 Identities = 50/255 (19%), Positives = 91/255 (35%), Gaps = 9/255 (3%)

Query: 40  NNPKSNFKSPTEILKSLLIIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLL 99
           NN ++ + S   IL+ +         ++ +++           S  ++ +L +   ++  
Sbjct: 228 NNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQ-VVSD 286

Query: 100 VHQASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPS-IQRLVLKYNRIKTV-DSAIQF 157
           V         +   N      T     +  +      S    L    N +          
Sbjct: 287 VFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGH 346

Query: 158 YSSLQHVDLSHNQLVNIPIRG--FEPQEKLVELQLNHNKL-SSVNNKTFIGLKSLKVLNL 214
            + L+ + L  NQL  +          + L +L ++ N +            KSL  LN+
Sbjct: 347 LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM 406

Query: 215 RGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPS 274
             N L D   R       ++ LDL  N+I  I +   + L AL+ L +  NQL+SVP   
Sbjct: 407 SSNILTDTIFRCL--PPRIKVLDLHSNKIKSIPKQVVK-LEALQELNVASNQLKSVPDGI 463

Query: 275 FIYLGMLAELRVGLN 289
           F  L  L ++ +  N
Sbjct: 464 FDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 84.1 bits (208), Expect = 3e-18
 Identities = 40/295 (13%), Positives = 89/295 (30%), Gaps = 24/295 (8%)

Query: 31  LYKLHPGFQNNPKSNFKSPTEILKSLLIIPFEVRILNKLRIFINDSVLFSSVSDITMWSL 90
           +  L+               E  + L     E   +          +L  SV  +    L
Sbjct: 135 IAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLEL 194

Query: 91  LVTTALLLLVHQASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKT 150
                +L     +                     A L   P   N ++  +   +N    
Sbjct: 195 SNIKCVLEDNKCSYFLSIL---------------AKLQTNPKLSNLTLNNIETTWNSFIR 239

Query: 151 VDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQ-----EKLVELQLNHNKLSSVNNKTFIG 205
           +   + +++++ +  +S+ +L                + L   Q+  +      +  +  
Sbjct: 240 I-LQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEI 298

Query: 206 LKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDN 265
             ++ + N   +    +     + +S    LD   N ++         LT L  L L  N
Sbjct: 299 FSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN 358

Query: 266 QLRSVPTPSFIYLGM--LAELRVGLNVFT-TLADGAFNGLGRLSALDLRGAGLTN 317
           QL+ +   + +   M  L +L +  N  +     G  +    L +L++    LT+
Sbjct: 359 QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD 413

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 79.1 bits (195), Expect = 2e-16
 Identities = 32/136 (23%), Positives = 68/136 (50%), Gaps = 7/136 (5%)

Query: 136 PSIQRLVLKYNRIKTVDSAIQF---YSSLQHVDLSHNQLVNIPIRG-FEPQEKLVELQLN 191
             ++ L+L+ N++K +    +      SLQ +D+S N +     +G     + L+ L ++
Sbjct: 348 TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS 407

Query: 192 HNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACF 251
            N L+    +       +KVL+L  N ++ +P ++   L  L+EL++  N++  +    F
Sbjct: 408 SNILTDTIFRCL--PPRIKVLDLHSNKIKSIPKQVVK-LEALQELNVASNQLKSVPDGIF 464

Query: 252 EGLTALRILYLDDNQL 267
           + LT+L+ ++L  N  
Sbjct: 465 DRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 58.7 bits (142), Expect = 8e-10
 Identities = 26/205 (12%), Positives = 51/205 (24%), Gaps = 23/205 (11%)

Query: 137 SIQRLVLKYNRI----KTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNH 192
            +Q    +   I          I   S     +L  + +  +           +  +L  
Sbjct: 159 GLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQT 218

Query: 193 N-------------------KLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHL 233
           N                   ++  +   T +   S+  + L+G       D     L  L
Sbjct: 219 NPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKAL 278

Query: 234 EELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTT 293
               +  +         +E  + + I     +  R V       +     L    N+ T 
Sbjct: 279 SIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTD 338

Query: 294 LADGAFNGLGRLSALDLRGAGLTNM 318
                   L  L  L L+   L  +
Sbjct: 339 TVFENCGHLTELETLILQMNQLKEL 363

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.3 bits (102), Expect = 6e-05
 Identities = 27/200 (13%), Positives = 59/200 (29%), Gaps = 10/200 (5%)

Query: 126 NLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYS--SLQHVDLSHNQLVNIPIRGFEPQE 183
            L  I      +++ L L +N    +    +F +   L+ + LS   L    +       
Sbjct: 80  KLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLN 139

Query: 184 KLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRI 243
               L +         +    GL+     +L   F  +        +S     +L  + I
Sbjct: 140 ISKVLLVLGETYGEKED--PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI 197

Query: 244 SRIDQACFEGLTALRILYLDDNQ------LRSVPTPSFIYLGMLAELRVGLNVFTTLADG 297
             + +          +  L  N       L ++ T    ++ +L  +      + ++++ 
Sbjct: 198 KCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV 257

Query: 298 AFNGLGRLSALDLRGAGLTN 317
              G       D  G  L  
Sbjct: 258 KLQGQLDFRDFDYSGTSLKA 277

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  100 bits (250), Expect = 2e-23
 Identities = 38/207 (18%), Positives = 79/207 (38%), Gaps = 21/207 (10%)

Query: 126 NLDVIPITLN--PSIQRLVLKYNRIKTVD---------SAIQFYSSLQHVDLSHNQLVNI 174
           NL  +P  L   P +Q + +  NR  + +         +       +Q + + +N L   
Sbjct: 261 NLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTF 320

Query: 175 PI-RGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHL 233
           P+    +  +KL  L+  +N+L       F     L  LNL  N + ++P         +
Sbjct: 321 PVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQV 379

Query: 234 EELDLGQNRISRI-DQACFEGLTALRILYLDDNQLRSVPT-------PSFIYLGMLAELR 285
           E L    N++  I +    + ++ +  +    N++ SV         P+      ++ + 
Sbjct: 380 ENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439

Query: 286 VGLNVFTTLADGAFNGLGRLSALDLRG 312
           +  N  +      F+    LS+++L G
Sbjct: 440 LSNNQISKFPKELFSTGSPLSSINLMG 466

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  100 bits (250), Expect = 2e-23
 Identities = 40/191 (20%), Positives = 74/191 (38%), Gaps = 16/191 (8%)

Query: 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKL 195
             +  L   YN+++    A      L  ++L++NQ+  IP       E++  L   HNKL
Sbjct: 330 KKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKL 389

Query: 196 SSVNNKTFIG-LKSLKVLNLRGNFLEDLPDRLFAP-------LSHLEELDLGQNRISRID 247
             + N      +  +  ++   N +  +  + F P         ++  ++L  N+IS+  
Sbjct: 390 KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFP 449

Query: 248 QACFEGLTALRILYLDDNQLRSVPT-------PSFIYLGMLAELRVGLNVFTTL-ADGAF 299
           +  F   + L  + L  N L  +P         +F    +L  + +  N  T L  D   
Sbjct: 450 KELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRA 509

Query: 300 NGLGRLSALDL 310
             L  L  +DL
Sbjct: 510 TTLPYLVGIDL 520

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 84.3 bits (209), Expect = 3e-18
 Identities = 30/211 (14%), Positives = 60/211 (28%), Gaps = 41/211 (19%)

Query: 132 ITLNPSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQ-------E 183
                ++  + L  N+I           S L  ++L  N L  IP    + +        
Sbjct: 429 PFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTY 488

Query: 184 KLVELQLNHNKLSSV-NNKTFIGLKSLKVLNLRGNFLEDLPDRL---------------- 226
            L  + L  NKL+ + ++     L  L  ++L  N     P +                 
Sbjct: 489 LLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRD 548

Query: 227 -------------FAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTP 273
                              L +L +G N I ++++        + +L + DN   S+   
Sbjct: 549 AQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI---TPNISVLDIKDNPNISIDLS 605

Query: 274 SFIYLGMLAELRVGLNVFTTLADGAFNGLGR 304
                       +  +    +       + R
Sbjct: 606 YVCPYIEAGMYMLFYDKTQDIRGCDALDIKR 636

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 67.8 bits (166), Expect = 1e-12
 Identities = 18/196 (9%), Positives = 59/196 (30%), Gaps = 16/196 (8%)

Query: 127 LDVIPITLNPSIQRLVLKYNR-IKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKL 185
           +D  P      + +  +  +   K++  + +       +    N +  +  +      KL
Sbjct: 150 VDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVS-KAVMRLTKL 208

Query: 186 VELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISR 245
            +  + ++   + N       ++ +             D  +  L  L ++++       
Sbjct: 209 RQFYMGNSPFVAENICEAWENENSEYAQQYKTE-----DLKWDNLKDLTDVEVYNCPNLT 263

Query: 246 IDQACFEGLTALRILYLDDNQLRSVPT--------PSFIYLGMLAELRVGLNVFTTL-AD 296
                 + L  ++++ +  N+  S                   +  + +G N   T   +
Sbjct: 264 KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVE 323

Query: 297 GAFNGLGRLSALDLRG 312
            +   + +L  L+   
Sbjct: 324 TSLQKMKKLGMLECLY 339

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.4 bits (152), Expect = 5e-11
 Identities = 24/190 (12%), Positives = 54/190 (28%), Gaps = 15/190 (7%)

Query: 135 NPSIQRLVLKYNRIK-TVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQE--KLVELQLN 191
           N  +  L L+       V  AI   + L+ + L  +    +  R F P+     +  +  
Sbjct: 80  NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGE-KVNERLFGPKGISANMSDEQK 138

Query: 192 HNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAP-----LSHLEELDLGQNRISRI 246
                                +L  + +   P +              ++    N I+ +
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV 198

Query: 247 DQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLS 306
            +A    LT LR  Y+ ++   +               +          D  ++ L  L+
Sbjct: 199 SKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQ-----QYKTEDLKWDNLKDLT 252

Query: 307 ALDLRGAGLT 316
            +++      
Sbjct: 253 DVEVYNCPNL 262

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.1 bits (102), Expect = 9e-05
 Identities = 11/89 (12%), Positives = 20/89 (22%), Gaps = 1/89 (1%)

Query: 230 LSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIY-LGMLAELRVGL 288
              +  L L     S         LT L +L L  +  +          +          
Sbjct: 80  NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQ 139

Query: 289 NVFTTLADGAFNGLGRLSALDLRGAGLTN 317
            +         +   R    DL    + +
Sbjct: 140 KMRMHYQKTFVDYDPREDFSDLIKDCINS 168

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 95.5 bits (238), Expect = 2e-23
 Identities = 54/181 (29%), Positives = 79/181 (43%), Gaps = 27/181 (14%)

Query: 101 HQASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSS 160
           H ++A CP  C C+  T  V C+      +P  +  + Q L L  N              
Sbjct: 8   HHSAA-CPSQCSCSGTT--VDCRSKRHASVPAGIPTNAQILYLHDN-------------- 50

Query: 161 LQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLE 220
                    Q+  +    F+    L EL L  N+L ++    F  L  L VL+L  N L 
Sbjct: 51  ---------QITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 221 DLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGM 280
            LP  +F  L HL+EL +  N+++ + +   E LT L  L LD NQL+S+P  +F  L  
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLTELPRG-IERLTHLTHLALDQNQLKSIPHGAFDRLSS 160

Query: 281 L 281
           L
Sbjct: 161 L 161

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 61.6 bits (150), Expect = 3e-11
 Identities = 35/102 (34%), Positives = 50/102 (49%), Gaps = 1/102 (0%)

Query: 210 KVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRS 269
           ++L L  N +  L   +F  L +L+EL LG N++  +    F+ LT L +L L  NQL  
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102

Query: 270 VPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLR 311
           +P+  F  L  L EL +  N  T L  G    L  L+ L L 
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTELPRG-IERLTHLTHLALD 143

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 97.6 bits (244), Expect = 3e-23
 Identities = 43/185 (23%), Positives = 77/185 (41%), Gaps = 11/185 (5%)

Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
           D+ P++    +  L +  +++K V + I   + L  + L++NQ+ +I          L  
Sbjct: 147 DLSPLSNMTGLNYLTVTESKVKDV-TPIANLTDLYSLSLNYNQIEDIS--PLASLTSLHY 203

Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
                N+++ +       +  L  L +  N + DL     A LS L  L++G N+IS I+
Sbjct: 204 FTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDIN 259

Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSA 307
               + LT L++L +  NQ+  +       L  L  L +  N           GL  L+ 
Sbjct: 260 A--VKDLTKLKMLNVGSNQISDIS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315

Query: 308 LDLRG 312
           L L  
Sbjct: 316 LFLSQ 320

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 96.1 bits (240), Expect = 9e-23
 Identities = 41/191 (21%), Positives = 73/191 (38%), Gaps = 12/191 (6%)

Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
            + P        R VL+   +  V    +   S+  + ++  ++ +I   G E    L  
Sbjct: 14  QIFPDADLAEGIRAVLQKASVTDV-VTQEELESITKLVVAGEKVASIQ--GIEYLTNLEY 70

Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
           L LN N+++ ++      L  L  L +  N + D+       L++L EL L ++ IS I 
Sbjct: 71  LNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNISDIS 126

Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSA 307
                 LT +  L L  N   S  +P    +  L  L V  +    +       L  L +
Sbjct: 127 --PLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVT--PIANLTDLYS 181

Query: 308 LDLRGAGLTNM 318
           L L    + ++
Sbjct: 182 LSLNYNQIEDI 192

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 95.3 bits (238), Expect = 2e-22
 Identities = 46/185 (24%), Positives = 81/185 (43%), Gaps = 11/185 (5%)

Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
           DV PI     +  L L YN+I+ + S +   +SL +     NQ+ +I         +L  
Sbjct: 169 DVTPIANLTDLYSLSLNYNQIEDI-SPLASLTSLHYFTAYVNQITDIT--PVANMTRLNS 225

Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
           L++ +NK++ ++      L  L  L +  N + D+       L+ L+ L++G N+IS I 
Sbjct: 226 LKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQISDIS 281

Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSA 307
                 L+ L  L+L++NQL +        L  L  L +  N  T +       L ++ +
Sbjct: 282 V--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR--PLASLSKMDS 337

Query: 308 LDLRG 312
            D   
Sbjct: 338 ADFAN 342

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 94.5 bits (236), Expect = 3e-22
 Identities = 41/190 (21%), Positives = 80/190 (42%), Gaps = 12/190 (6%)

Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
           D+ P+     +  L L  N   +  S +   + L ++ ++ +++ ++          L  
Sbjct: 124 DISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVT--PIANLTDLYS 181

Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
           L LN+N++  ++      L SL       N + D+     A ++ L  L +G N+I+ + 
Sbjct: 182 LSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS 237

Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSA 307
                 L+ L  L +  NQ+  +   +   L  L  L VG N  + ++    N L +L++
Sbjct: 238 --PLANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDIS--VLNNLSQLNS 291

Query: 308 LDLRGAGLTN 317
           L L    L N
Sbjct: 292 LFLNNNQLGN 301

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 91.8 bits (229), Expect = 3e-21
 Identities = 34/162 (20%), Positives = 65/162 (40%), Gaps = 9/162 (5%)

Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
           D+ P+    S+       N+I  + + +   + L  + + +N++ ++         +L  
Sbjct: 191 DISPLASLTSLHYFTAYVNQITDI-TPVANMTRLNSLKIGNNKITDLS--PLANLSQLTW 247

Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
           L++  N++S +N      L  LK+LN+  N + D+       LS L  L L  N++   D
Sbjct: 248 LEIGTNQISDINA--VKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNED 303

Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLN 289
                GLT L  L+L  N +  +       L  +        
Sbjct: 304 MEVIGGLTNLTTLFLSQNHITDI--RPLASLSKMDSADFANQ 343

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 91.4 bits (228), Expect = 4e-21
 Identities = 31/141 (21%), Positives = 59/141 (41%), Gaps = 7/141 (4%)

Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
           D+ P+     +  L +  N+I  + S +   S L  +++  NQ+ +I     +   KL  
Sbjct: 213 DITPVANMTRLNSLKIGNNKITDL-SPLANLSQLTWLEIGTNQISDIN--AVKDLTKLKM 269

Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
           L +  N++S ++      L  L  L L  N L +    +   L++L  L L QN I+ I 
Sbjct: 270 LNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR 327

Query: 248 QACFEGLTALRILYLDDNQLR 268
                 L+ +      +  ++
Sbjct: 328 P--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 79.5 bits (197), Expect = 7e-17
 Identities = 28/118 (23%), Positives = 56/118 (47%), Gaps = 5/118 (4%)

Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
           D+ P+     +  L +  N+I  + +A++  + L+ +++  NQ+ +I         +L  
Sbjct: 235 DLSPLANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQISDIS--VLNNLSQLNS 291

Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISR 245
           L LN+N+L + + +   GL +L  L L  N + D+     A LS ++  D     I +
Sbjct: 292 LFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIKK 347

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 99.2 bits (247), Expect = 3e-23
 Identities = 49/204 (24%), Positives = 90/204 (44%), Gaps = 8/204 (3%)

Query: 113 CNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQL 171
            N+   +V     NL  +P  L P  + L L  N I  +    I F S L+ + LSHN++
Sbjct: 29  SNELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRI 88

Query: 172 VNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPD-RLFAPL 230
            ++    F   + L  L ++HN+L ++   +   + SL+ L+L  N  + LP  + F  L
Sbjct: 89  RSLDFHVFLFNQDLEYLDVSHNRLQNI---SCCPMASLRHLDLSFNDFDVLPVCKEFGNL 145

Query: 231 SHLEELDLGQNRISRIDQACFEGL-TALRILYLDDNQLRSVPTPSFIYLG--MLAELRVG 287
           + L  L L   +  ++D      L  +  +L L    ++   T S       +L  +   
Sbjct: 146 TKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205

Query: 288 LNVFTTLADGAFNGLGRLSALDLR 311
            ++F+   + + N LG L   +++
Sbjct: 206 NSLFSVQVNMSVNALGHLQLSNIK 229

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 81.8 bits (202), Expect = 2e-17
 Identities = 43/161 (26%), Positives = 62/161 (38%), Gaps = 11/161 (6%)

Query: 137 SIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKL 195
           S   L    N               LQ + L  N L N        +  +  L+     L
Sbjct: 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK-NMSSLETLDVSL 412

Query: 196 SS----VNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPL-SHLEELDLGQNRISRIDQAC 250
           +S      ++T    +S+ VLNL  N    L   +F  L   ++ LDL  NRI  I +  
Sbjct: 413 NSLNSHAYDRTCAWAESILVLNLSSN---MLTGSVFRCLPPKVKVLDLHNNRIMSIPKD- 468

Query: 251 FEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVF 291
              L AL+ L +  NQL+SVP   F  L  L  + +  N +
Sbjct: 469 VTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 78.4 bits (193), Expect = 3e-16
 Identities = 36/276 (13%), Positives = 83/276 (30%), Gaps = 26/276 (9%)

Query: 66  LNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKEA 125
           L+   I ++         +     +  TT L L+ H  S F        +    +     
Sbjct: 169 LHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNI 228

Query: 126 NLDVIP----------ITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIP 175
            L+             +T  P++  + L++    T   +++ +       + +  + N+ 
Sbjct: 229 KLNDENCQRLMTFLSELTRGPTLLNVTLQHIET-TWKCSVKLFQFFWPRPVEYLNIYNLT 287

Query: 176 IRGFEPQEK----------LVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDR 225
           I     +E+          L+   + +          +     + +  L  +    +   
Sbjct: 288 ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV 347

Query: 226 LFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELR 285
                S    L+  QN  +         L  L+ L L  N L++    + +    ++ L 
Sbjct: 348 CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALM-TKNMSSLE 406

Query: 286 VGLNVFTTLADGAFNGL----GRLSALDLRGAGLTN 317
                  +L   A++        +  L+L    LT 
Sbjct: 407 TLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG 442

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 71.8 bits (176), Expect = 5e-14
 Identities = 31/135 (22%), Positives = 62/135 (45%), Gaps = 9/135 (6%)

Query: 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEP----QEKLVELQLN 191
             +Q L+L+ N +K          ++  ++     L ++    ++      E ++ L L+
Sbjct: 377 KRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLS 436

Query: 192 HNKLSSVNNKTFIGL-KSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQAC 250
            N L+      F  L   +KVL+L  N +  +P      L  L+EL++  N++  +    
Sbjct: 437 SNMLTGS---VFRCLPPKVKVLDLHNNRIMSIPKD-VTHLQALQELNVASNQLKSVPDGV 492

Query: 251 FEGLTALRILYLDDN 265
           F+ LT+L+ ++L DN
Sbjct: 493 FDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 68.4 bits (167), Expect = 7e-13
 Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 4/111 (3%)

Query: 208 SLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQL 267
             K L+L  N + +L     + LS L  L L  NRI  +D   F     L  L +  N+L
Sbjct: 53  RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112

Query: 268 RSVPTPSFIYLGMLAELRVGLNVFTTLADGA-FNGLGRLSALDLRGAGLTN 317
           +++       +  L  L +  N F  L     F  L +L+ L L  A    
Sbjct: 113 QNIS---CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 63.0 bits (153), Expect = 4e-11
 Identities = 34/184 (18%), Positives = 70/184 (38%), Gaps = 15/184 (8%)

Query: 66  LNKLRIFINDS-VLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKE 124
           +N   + I+D+  +               T L    +  +      C        +  + 
Sbjct: 331 MNIKMLSISDTPFIHMVCPPS----PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQR 386

Query: 125 ANLDVIPIT--LNPSIQRLVLKYNRIKTV-----DSAIQFYSSLQHVDLSHNQLVNIPIR 177
             L        +  ++  L      + ++     D    +  S+  ++LS N L     R
Sbjct: 387 NGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR 446

Query: 178 GFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELD 237
              P+  +  L L++N++ S+  K    L++L+ LN+  N L+ +PD +F  L+ L+ + 
Sbjct: 447 CLPPK--VKVLDLHNNRIMSIP-KDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIW 503

Query: 238 LGQN 241
           L  N
Sbjct: 504 LHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 49.5 bits (118), Expect = 9e-07
 Identities = 27/232 (11%), Positives = 61/232 (26%), Gaps = 43/232 (18%)

Query: 127 LDVIPITLNPSIQRLVLKYNRIKTVDSAIQFY--SSLQHVDLSHNQLVNIPIRGFEP-QE 183
           L  I      S++ L L +N    +    +F   + L  + LS  +   + +        
Sbjct: 112 LQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHL 171

Query: 184 KLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRI 243
             + L L    +     ++        VL+L  +       ++   ++ L  L L   ++
Sbjct: 172 SCILLDLVSYHIKGGETESLQIPN-TTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKL 230

Query: 244 SRIDQACFEGL----------------------------------TALRILYLDDNQLRS 269
           +  +                                           +  L + +  +  
Sbjct: 231 NDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITE 290

Query: 270 VP-----TPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT 316
                  T S   L  L    V   VF    +  ++    ++   L  +   
Sbjct: 291 RIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP 342

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 95.8 bits (238), Expect = 4e-22
 Identities = 45/229 (19%), Positives = 84/229 (36%), Gaps = 26/229 (11%)

Query: 88  WSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNR 147
           W      AL       +     +C  N  +  +     NL  +P  L P I  L +  N 
Sbjct: 33  WDKWEKQALPGENRNEAVSLLKECLINQFS-ELQLNRLNLSSLPDNLPPQITVLEITQNA 91

Query: 148 IKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLK 207
           + ++       +SL+++D   N+L  +P    E    L  L +++N+L+ +         
Sbjct: 92  LISLPELP---ASLEYLDACDNRLSTLP----ELPASLKHLDVDNNQLTMLPE----LPA 140

Query: 208 SLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQL 267
            L+ +N   N L  LP+      + LE L +  N+++ +     E   +L  L +  N L
Sbjct: 141 LLEYINADNNQLTMLPEL----PTSLEVLSVRNNQLTFLP----ELPESLEALDVSTNLL 192

Query: 268 RSVPTPSFIYLGMLAELRVGLNV----FTTLADGAFNGLGRLSALDLRG 312
            S+P    +      E  +         T + +   + L     + L  
Sbjct: 193 ESLP-AVPVRNHHSEETEIFFRCRENRITHIPENILS-LDPTCTIILED 239

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 80.0 bits (197), Expect = 9e-17
 Identities = 36/172 (20%), Positives = 65/172 (37%), Gaps = 16/172 (9%)

Query: 126 NLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKL 185
            L  +P     S++ L +  N++  +       + L++++  +NQL  +P    E    L
Sbjct: 111 RLSTLPELP-ASLKHLDVDNNQLTMLPELP---ALLEYINADNNQLTMLP----ELPTSL 162

Query: 186 VELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPD---RLFAPLSHLEELDLGQNR 242
             L + +N+L+ +        +SL+ L++  N LE LP    R              +NR
Sbjct: 163 EVLSVRNNQLTFLPE----LPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENR 218

Query: 243 ISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTL 294
           I+ I       L     + L+DN L S    S        +       F+  
Sbjct: 219 ITHI-PENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMS 269

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 73.5 bits (180), Expect = 1e-14
 Identities = 32/155 (20%), Positives = 53/155 (34%), Gaps = 20/155 (12%)

Query: 165 DLSHNQLVNIP---IRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLED 221
           +  +N +          ++  EK      N N+  S+  +    +     L L    L  
Sbjct: 16  NSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKE--CLINQFSELQLNRLNLSS 73

Query: 222 LPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGML 281
           LPD L      +  L++ QN +  +     E   +L  L   DN+L ++P         L
Sbjct: 74  LPDNLP---PQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE----LPASL 122

Query: 282 AELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT 316
             L V  N  T L +        L  ++     LT
Sbjct: 123 KHLDVDNNQLTMLPE----LPALLEYINADNNQLT 153

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 94.6 bits (236), Expect = 8e-22
 Identities = 50/191 (26%), Positives = 89/191 (46%), Gaps = 13/191 (6%)

Query: 127 LDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLV 186
            D+ P+    +++RL +  N++  + S +   ++L+ +  ++NQ+ +I          L 
Sbjct: 168 TDLKPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDIT--PLGILTNLD 224

Query: 187 ELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRI 246
           EL LN N+L  +       L +L  L+L  N + +L     + L+ L EL LG N+IS I
Sbjct: 225 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI 280

Query: 247 DQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLS 306
                 GLTAL  L L++NQL  +       L  L  L +  N  + ++    + L +L 
Sbjct: 281 S--PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQ 334

Query: 307 ALDLRGAGLTN 317
            L      +++
Sbjct: 335 RLFFYNNKVSD 345

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 92.3 bits (230), Expect = 5e-21
 Identities = 43/190 (22%), Positives = 82/190 (43%), Gaps = 14/190 (7%)

Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
           D +  T    +  L      IK++   +++ ++L  ++ S+NQL +I     +   KLV+
Sbjct: 38  DTVSQTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVD 94

Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
           + +N+N+++ +       L +L  L L  N + D+       L++L  L+L  N IS I 
Sbjct: 95  ILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS 150

Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSA 307
                GLT+L+ L   +      P      L  L  L +  N  + ++      L  L +
Sbjct: 151 --ALSGLTSLQQLSFGNQVTDLKP---LANLTTLERLDISSNKVSDIS--VLAKLTNLES 203

Query: 308 LDLRGAGLTN 317
           L      +++
Sbjct: 204 LIATNNQISD 213

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 89.6 bits (223), Expect = 4e-20
 Identities = 38/191 (19%), Positives = 70/191 (36%), Gaps = 14/191 (7%)

Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
            +   T      + VL    +    S       +  +      + +I   G E    L +
Sbjct: 16  QIFTDTALAEKMKTVLGKTNVTDTVSQTDL-DQVTTLQADRLGIKSID--GVEYLNNLTQ 72

Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
           +  ++N+L+ +       L  L  + +  N + D+     A L++L  L L  N+I+ ID
Sbjct: 73  INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDID 128

Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSA 307
               + LT L  L L  N +  +   +   L  L +L  G  V           L  L  
Sbjct: 129 --PLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGNQVTDLK---PLANLTTLER 181

Query: 308 LDLRGAGLTNM 318
           LD+    ++++
Sbjct: 182 LDISSNKVSDI 192

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 89.3 bits (222), Expect = 6e-20
 Identities = 49/190 (25%), Positives = 85/190 (44%), Gaps = 14/190 (7%)

Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
           D+ P+    ++ RL L  N I  + SA+   +SLQ +   +      P+        L  
Sbjct: 126 DIDPLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLSFGNQVTDLKPLANLT---TLER 181

Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
           L ++ NK+S ++      L +L+ L    N + D+       L++L+EL L  N++  I 
Sbjct: 182 LDISSNKVSDISV--LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG 237

Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSA 307
                 LT L  L L +NQ+ ++       L  L EL++G N  + ++     GL  L+ 
Sbjct: 238 T--LASLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQISNIS--PLAGLTALTN 291

Query: 308 LDLRGAGLTN 317
           L+L    L +
Sbjct: 292 LELNENQLED 301

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 76.9 bits (190), Expect = 7e-16
 Identities = 32/167 (19%), Positives = 65/167 (38%), Gaps = 9/167 (5%)

Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
           ++ P+    ++  L L  N+++ + S I    +L ++ L  N + +I         KL  
Sbjct: 279 NISPLAGLTALTNLELNENQLEDI-SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQR 335

Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
           L   +NK+S V++     L ++  L+   N + DL     A L+ + +L L     +   
Sbjct: 336 LFFYNNKVSDVSS--LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAP 391

Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTL 294
                 ++    +      L +  T S    G   E  +  N+ +  
Sbjct: 392 VNYKANVSIPNTVKNVTGALIAPATISD--GGSYTEPDITWNLPSYT 436

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 70.0 bits (172), Expect = 1e-13
 Identities = 24/158 (15%), Positives = 60/158 (37%), Gaps = 11/158 (6%)

Query: 160 SLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFL 219
            L    ++ +  +N  I       + ++  L    ++     +   L  +  L      +
Sbjct: 2   PLGSATITQDTPINQ-IFTDTALAEKMKTVLGKTNVTDT--VSQTDLDQVTTLQADRLGI 58

Query: 220 EDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLG 279
           + +       L++L +++   N+++ I     + LT L  + +++NQ+  +       L 
Sbjct: 59  KSIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI--TPLANLT 112

Query: 280 MLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN 317
            L  L +  N  T +       L  L+ L+L    +++
Sbjct: 113 NLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISD 148

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 92.6 bits (230), Expect = 6e-21
 Identities = 47/208 (22%), Positives = 77/208 (37%), Gaps = 28/208 (13%)

Query: 109 PDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSH 168
             C  N    V+   E+ L  +P  L   I  LV+  N + ++ +       L+ +++S 
Sbjct: 35  RACLNNGNA-VLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALP---PELRTLEVSG 90

Query: 169 NQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFA 228
           NQL ++P+       +L         L ++          L  L + GN L  LP     
Sbjct: 91  NQLTSLPV-LPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLTSLPVL--- 139

Query: 229 PLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGL 288
               L+EL +  N+++ +        + L  L+  +NQL S+P         L EL V  
Sbjct: 140 -PPGLQELSVSDNQLASLP----ALPSELCKLWAYNNQLTSLPM----LPSGLQELSVSD 190

Query: 289 NVFTTLADGAFNGLGRLSALDLRGAGLT 316
           N   +L          L  L      LT
Sbjct: 191 NQLASLPT----LPSELYKLWAYNNRLT 214

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 83.8 bits (207), Expect = 5e-18
 Identities = 43/192 (22%), Positives = 73/192 (38%), Gaps = 28/192 (14%)

Query: 126 NLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKL 185
           NL  +P    P ++ L +  N++ ++         L         L  +P         L
Sbjct: 72  NLTSLPALP-PELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALP-------SGL 123

Query: 186 VELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISR 245
            +L +  N+L+S+          L+ L++  N L  LP       S L +L    N+++ 
Sbjct: 124 CKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLPAL----PSELCKLWAYNNQLTS 175

Query: 246 IDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRL 305
           +        + L+ L + DNQL S+PT        L +L    N  T+L          L
Sbjct: 176 LP----MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLP----ALPSGL 223

Query: 306 SALDLRGAGLTN 317
             L + G  LT+
Sbjct: 224 KELIVSGNRLTS 235

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 81.1 bits (200), Expect = 5e-17
 Identities = 33/156 (21%), Positives = 67/156 (42%), Gaps = 17/156 (10%)

Query: 126 NLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKL 185
            L  +P+     +Q L +  N++ ++ +     S L  +   +N+L ++P         L
Sbjct: 172 QLTSLPMLP-SGLQELSVSDNQLASLPTLP---SELYKLWAYNNRLTSLP----ALPSGL 223

Query: 186 VELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISR 245
            EL ++ N+L+S+          LK L + GN L  LP       S L  L + +N+++R
Sbjct: 224 KELIVSGNRLTSLPV----LPSELKELMVSGNRLTSLPMLP----SGLLSLSVYRNQLTR 275

Query: 246 IDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGML 281
           + ++    L++   + L+ N L      +   +   
Sbjct: 276 LPES-LIHLSSETTVNLEGNPLSERTLQALREITSA 310

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 63.0 bits (153), Expect = 4e-11
 Identities = 28/112 (25%), Positives = 41/112 (36%), Gaps = 15/112 (13%)

Query: 206 LKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDN 265
                VLN+  + L  LPD L    +H+  L +  N ++ +          LR L +  N
Sbjct: 39  NNGNAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTSLP----ALPPELRTLEVSGN 91

Query: 266 QLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN 317
           QL S+P      L  L+     L     L          L  L + G  LT+
Sbjct: 92  QLTSLP-VLPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLTS 135

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 60.7 bits (147), Expect = 2e-10
 Identities = 31/142 (21%), Positives = 58/142 (40%), Gaps = 12/142 (8%)

Query: 126 NLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKL 185
            L  +P      ++ L++  NR+ ++       S L+ + +S N+L ++P+    P   L
Sbjct: 212 RLTSLPALP-SGLKELIVSGNRLTSLPVLP---SELKELMVSGNRLTSLPM---LPS-GL 263

Query: 186 VELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISR 245
           + L +  N+L+ +   + I L S   +NL GN L +   +    ++           I R
Sbjct: 264 LSLSVYRNQLTRLPE-SLIHLSSETTVNLEGNPLSERTLQALREITSAPGYS---GPIIR 319

Query: 246 IDQACFEGLTALRILYLDDNQL 267
            D A        R L+L     
Sbjct: 320 FDMAGASAPRETRALHLAAADW 341

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 89.4 bits (222), Expect = 1e-20
 Identities = 39/210 (18%), Positives = 80/210 (38%), Gaps = 31/210 (14%)

Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIP------------ 175
           D +       I  L      + T+   +Q+ ++L  ++L  NQ+ ++             
Sbjct: 33  DTVTQADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAPLKNLTKITELE 91

Query: 176 --------IRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLF 227
                   +      + +  L L   +++ V      GL +L+VL L  N + ++     
Sbjct: 92  LSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--L 147

Query: 228 APLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVG 287
           A L++L+ L +G  ++S +       L+ L  L  DDN++  +       L  L E+ + 
Sbjct: 148 AGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLK 203

Query: 288 LNVFTTLADGAFNGLGRLSALDLRGAGLTN 317
            N  + ++         L  + L    +TN
Sbjct: 204 NNQISDVS--PLANTSNLFIVTLTNQTITN 231

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 89.0 bits (221), Expect = 2e-20
 Identities = 36/191 (18%), Positives = 75/191 (39%), Gaps = 13/191 (6%)

Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
            + P     +  ++    + +            +  +      +  I   G +    L+ 
Sbjct: 11  VIFPDPALANAIKIAAGKSNVTDT-VTQADLDGITTLSAFGTGVTTIE--GVQYLNNLIG 67

Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
           L+L  N+++ +       L  +  L L GN L+++     A L  ++ LDL   +I+ + 
Sbjct: 68  LELKDNQITDLAP--LKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVT 123

Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSA 307
                GL+ L++LYLD NQ+ ++       L  L  L +G    + L       L +L+ 
Sbjct: 124 P--LAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTT 177

Query: 308 LDLRGAGLTNM 318
           L      ++++
Sbjct: 178 LKADDNKISDI 188

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 84.7 bits (210), Expect = 7e-19
 Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 9/144 (6%)

Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
           +V  I    SI+ L L   +I  V + +   S+LQ + L  NQ+ NI          L  
Sbjct: 99  NVSAIAGLQSIKTLDLTSTQITDV-TPLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQY 155

Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
           L + + ++S +       L  L  L    N + D+     A L +L E+ L  N+IS + 
Sbjct: 156 LSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS 211

Query: 248 QACFEGLTALRILYLDDNQLRSVP 271
                  + L I+ L +  + + P
Sbjct: 212 --PLANTSNLFIVTLTNQTITNQP 233

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 69.7 bits (171), Expect = 9e-14
 Identities = 29/140 (20%), Positives = 60/140 (42%), Gaps = 7/140 (5%)

Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
           DV P+    ++Q L L  N+I  + S +   ++LQ++ + + Q+ ++         KL  
Sbjct: 121 DVTPLAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTT 177

Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
           L+ + NK+S ++      L +L  ++L+ N + D+     A  S+L  + L    I+   
Sbjct: 178 LKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQP 233

Query: 248 QACFEGLTALRILYLDDNQL 267
                 L    ++       
Sbjct: 234 VFYNNNLVVPNVVKGPSGAP 253

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 90.4 bits (225), Expect = 2e-20
 Identities = 42/185 (22%), Positives = 76/185 (41%), Gaps = 18/185 (9%)

Query: 133 TLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNH 192
            L P ++ L +  N+++ +   +Q  S L+ +D+ +N L  +P    +    L  +   +
Sbjct: 128 DLPPLLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLP----DLPPSLEFIAAGN 182

Query: 193 NKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFE 252
           N+L  +       L  L  +    N L+ LPD        LE +  G N +  + +   +
Sbjct: 183 NQLEELPE--LQNLPFLTAIYADNNSLKKLPDLP----LSLESIVAGNNILEELPE--LQ 234

Query: 253 GLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG 312
            L  L  +Y D+N L+++P         L  L V  N  T L +     L  L   +   
Sbjct: 235 NLPFLTTIYADNNLLKTLPDL----PPSLEALNVRDNYLTDLPE-LPQSLTFLDVSENIF 289

Query: 313 AGLTN 317
           +GL+ 
Sbjct: 290 SGLSE 294

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 88.9 bits (221), Expect = 6e-20
 Identities = 40/192 (20%), Positives = 74/192 (38%), Gaps = 22/192 (11%)

Query: 126 NLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKL 185
            L  +P    P ++ LV   N +  +    Q   SL   + +   L ++P         L
Sbjct: 82  GLSSLPELP-PHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLP-------PLL 133

Query: 186 VELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISR 245
             L +++N+L  +          LK++++  N L+ LPD        LE +  G N++  
Sbjct: 134 EYLGVSNNQLEKLPE--LQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEE 187

Query: 246 IDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRL 305
           + +   + L  L  +Y D+N L+ +P         L  +  G N+   L +     L  L
Sbjct: 188 LPE--LQNLPFLTAIYADNNSLKKLPD----LPLSLESIVAGNNILEELPE--LQNLPFL 239

Query: 306 SALDLRGAGLTN 317
           + +      L  
Sbjct: 240 TTIYADNNLLKT 251

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 75.4 bits (186), Expect = 2e-15
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 29/187 (15%)

Query: 126 NLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKL 185
            L  +P    PS++ L ++ N +  +    Q   SL  +D+S N    +     E    L
Sbjct: 248 LLKTLPDLP-PSLEALNVRDNYLTDLPELPQ---SLTFLDVSENIFSGLS----ELPPNL 299

Query: 186 VELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISR 245
             L  + N++ S+ +       SL+ LN+  N L +LP         LE L    N ++ 
Sbjct: 300 YYLNASSNEIRSLCDL----PPSLEELNVSNNKLIELPAL----PPRLERLIASFNHLAE 351

Query: 246 IDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRL 305
           +     E    L+ L+++ N LR  P         + +LR+  +    +          L
Sbjct: 352 VP----ELPQNLKQLHVEYNPLREFPDI----PESVEDLRMN-SHLAEV----PELPQNL 398

Query: 306 SALDLRG 312
             L +  
Sbjct: 399 KQLHVET 405

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 71.6 bits (176), Expect = 5e-14
 Identities = 36/180 (20%), Positives = 73/180 (40%), Gaps = 24/180 (13%)

Query: 133 TLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNH 192
            L P++  L    N I+++        SL+ +++S+N+L+ +P        +L  L  + 
Sbjct: 294 ELPPNLYYLNASSNEIRSLCDLP---PSLEELNVSNNKLIELP----ALPPRLERLIASF 346

Query: 193 NKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFE 252
           N L+ V        ++LK L++  N L + PD        +E+L +  + ++ +     E
Sbjct: 347 NHLAEVPE----LPQNLKQLHVEYNPLREFPDIP----ESVEDLRMN-SHLAEV----PE 393

Query: 253 GLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG 312
               L+ L+++ N LR  P         + +LR+         + A     +L       
Sbjct: 394 LPQNLKQLHVETNPLREFPDI----PESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEH 449

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 68.1 bits (167), Expect = 6e-13
 Identities = 27/147 (18%), Positives = 55/147 (37%), Gaps = 26/147 (17%)

Query: 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKL 195
           PS++ L +  N++  + +       L+ +  S N L  +P     PQ  L +L + +N L
Sbjct: 317 PSLEELNVSNNKLIELPALP---PRLERLIASFNHLAEVPE---LPQ-NLKQLHVEYNPL 369

Query: 196 SSV-------------NNKTFI--GLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQ 240
                           ++   +    ++LK L++  N L + PD        +E+L +  
Sbjct: 370 REFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIP----ESVEDLRMNS 425

Query: 241 NRISRIDQACFEGLTALRILYLDDNQL 267
            R+    +   E    L     + +  
Sbjct: 426 ERVVDPYEFAHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 65.4 bits (160), Expect = 5e-12
 Identities = 27/198 (13%), Positives = 53/198 (26%), Gaps = 35/198 (17%)

Query: 135 NPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK 194
           N  +Q  +   + +  +    +   S      + ++       G   Q ++   +L    
Sbjct: 10  NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL 69

Query: 195 LSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGL 254
                       +    L L    L  LP+       HLE L    N ++ + +   + L
Sbjct: 70  D-----------RQAHELELNNLGLSSLPEL----PPHLESLVASCNSLTELPEL-PQSL 113

Query: 255 TALRILYLDDNQLRSVPT---------------PSFIYLGMLAELRVGLNVFTTLADGAF 299
            +L +   +   L  +P                P       L  + V  N    L     
Sbjct: 114 KSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKL----P 169

Query: 300 NGLGRLSALDLRGAGLTN 317
           +    L  +      L  
Sbjct: 170 DLPPSLEFIAAGNNQLEE 187

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 22/134 (16%), Positives = 45/134 (33%), Gaps = 23/134 (17%)

Query: 126 NLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIP---------- 175
            L  +P  L P ++RL+  +N +  V        +L+ + + +N L   P          
Sbjct: 328 KLIELP-ALPPRLERLIASFNHLAEVPELP---QNLKQLHVEYNPLREFPDIPESVEDLR 383

Query: 176 -----IRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPL 230
                    E  + L +L +  N L    +      +S++ L +    + D  +      
Sbjct: 384 MNSHLAEVPELPQNLKQLHVETNPLREFPDI----PESVEDLRMNSERVVDPYEFAHETT 439

Query: 231 SHLEELDLGQNRIS 244
             LE+     +   
Sbjct: 440 DKLEDDVFEHHHHH 453

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 85.8 bits (213), Expect = 3e-20
 Identities = 39/104 (37%), Positives = 53/104 (50%), Gaps = 1/104 (0%)

Query: 187 ELQLNHNKLSSV-NNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISR 245
           EL LN N+L  + ++  F  L  L  L L+ N L  +    F   SH++EL LG+N+I  
Sbjct: 33  ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE 92

Query: 246 IDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLN 289
           I    F GL  L+ L L DNQ+  V   SF +L  L  L +  N
Sbjct: 93  ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 85.8 bits (213), Expect = 4e-20
 Identities = 42/159 (26%), Positives = 67/159 (42%), Gaps = 24/159 (15%)

Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDL 166
           CP  C C   T  V C    L  IP  +      L+L  N +  + S   F         
Sbjct: 2   CPAMCHCEGTT--VDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLF--------- 50

Query: 167 SHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRL 226
              +L +           LV+L+L  N+L+ +    F G   ++ L L  N ++++ +++
Sbjct: 51  --GRLPH-----------LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKM 97

Query: 227 FAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDN 265
           F  L  L+ L+L  N+IS +    FE L +L  L L  N
Sbjct: 98  FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 57.7 bits (140), Expect = 3e-10
 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 1/79 (1%)

Query: 234 EELDLGQNRISRID-QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFT 292
            EL L  N + RI     F  L  L  L L  NQL  +   +F     + EL++G N   
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 293 TLADGAFNGLGRLSALDLR 311
            +++  F GL +L  L+L 
Sbjct: 92  EISNKMFLGLHQLKTLNLY 110

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 87.4 bits (217), Expect = 5e-20
 Identities = 41/174 (23%), Positives = 75/174 (43%), Gaps = 9/174 (5%)

Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
           D+ P+    ++  L L  N++K + S+++    L+ + L HN + +I   G     +L  
Sbjct: 82  DIKPLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNGISDIN--GLVHLPQLES 138

Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
           L L +NK++ +       L  L  L+L  N + D+     A L+ L+ L L +N IS + 
Sbjct: 139 LYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR 194

Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNG 301
                GL  L +L L   +  + P      L +   ++       T    + +G
Sbjct: 195 --ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDG 246

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 74.3 bits (183), Expect = 2e-15
 Identities = 35/183 (19%), Positives = 72/183 (39%), Gaps = 13/183 (7%)

Query: 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKL 195
           P     +     IK +  +   ++     +L    + +           + ++  N++ +
Sbjct: 2   PLGSETITVPTPIKQI-FSDDAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDI 58

Query: 196 SSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLT 255
            SV       L ++  L L GN L D+     A L +L  L L +N++  +     + L 
Sbjct: 59  KSVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS--SLKDLK 112

Query: 256 ALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGL 315
            L+ L L+ N +  +     ++L  L  L +G N  T +     + L +L  L L    +
Sbjct: 113 KLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQI 168

Query: 316 TNM 318
           +++
Sbjct: 169 SDI 171

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 89.0 bits (221), Expect = 6e-20
 Identities = 36/197 (18%), Positives = 64/197 (32%), Gaps = 18/197 (9%)

Query: 121 TCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFE 180
             +    D I      ++  L    + I  +   I+  + L  +  + N +  + +    
Sbjct: 27  AFEMQATDTISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLDLSQN- 84

Query: 181 PQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQ 240
               L  L  + NKL++++      L  L  LN   N L  L     +    L  L+  +
Sbjct: 85  --TNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCAR 136

Query: 241 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFN 300
           N ++ ID       T L  L    N+  +           L  L    N  T L     +
Sbjct: 137 NTLTEID---VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITEL---DVS 188

Query: 301 GLGRLSALDLRGAGLTN 317
               L+ L+     +T 
Sbjct: 189 QNKLLNRLNCDTNNITK 205

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 84.0 bits (208), Expect = 3e-18
 Identities = 35/196 (17%), Positives = 67/196 (34%), Gaps = 18/196 (9%)

Query: 122 CKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEP 181
           C    L  I ++ N  +  L    N+  T    +   + L  +D S N++  + +   + 
Sbjct: 134 CARNTLTEIDVSHNTQLTELDCHLNKKITK-LDVTPQTQLTTLDCSFNKITELDVSQNK- 191

Query: 182 QEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQN 241
              L  L  + N ++ ++         L  L+   N L ++      PL+ L   D   N
Sbjct: 192 --LLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVN 243

Query: 242 RISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNG 301
            ++ +D      L+ L  L+     L  +       L               + +     
Sbjct: 244 PLTELD---VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-----AEGCRKIKELDVTH 295

Query: 302 LGRLSALDLRGAGLTN 317
             +L  LD + AG+T 
Sbjct: 296 NTQLYLLDCQAAGITE 311

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 79.0 bits (195), Expect = 2e-16
 Identities = 25/166 (15%), Positives = 52/166 (31%), Gaps = 30/166 (18%)

Query: 126 NLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKL 185
           N+  + +  N  +  L    N++  +D  +   + L + D S N L  + +       KL
Sbjct: 202 NITKLDLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVSTLS---KL 256

Query: 186 VELQLNHNKLSSV---------------NNK----TFIGLKSLKVLNLRGNFLEDLPDRL 226
             L      L  +                 K           L +L+ +   + +L    
Sbjct: 257 TTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELD--- 313

Query: 227 FAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPT 272
            +    L  L L    ++ +D       T L+ L   +  ++   +
Sbjct: 314 LSQNPKLVYLYLNNTELTELD---VSHNTKLKSLSCVNAHIQDFSS 356

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 77.8 bits (192), Expect = 4e-16
 Identities = 37/192 (19%), Positives = 64/192 (33%), Gaps = 19/192 (9%)

Query: 126 NLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKL 185
            +  + +T    +  L   +N+I  +D  +     L  ++   N +  + +       +L
Sbjct: 160 KITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKLDLNQNI---QL 214

Query: 186 VELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISR 245
             L  + NKL+ ++      L  L   +   N L +L     + LS L  L   Q  +  
Sbjct: 215 TFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTDLLE 268

Query: 246 IDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRL 305
           ID       T L  +Y      R +      +   L  L       T L     +   +L
Sbjct: 269 ID---LTHNTQL--IYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITEL---DLSQNPKL 320

Query: 306 SALDLRGAGLTN 317
             L L    LT 
Sbjct: 321 VYLYLNNTELTE 332

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 72.8 bits (179), Expect = 2e-14
 Identities = 23/169 (13%), Positives = 46/169 (27%), Gaps = 29/169 (17%)

Query: 126 NLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRG------- 178
            L  I +T    +       N +  +D +    S L  +      L+ I +         
Sbjct: 223 KLTEIDVTPLTQLTYFDCSVNPLTELDVSTL--SKLTTLHCIQTDLLEIDLTHNTQLIYF 280

Query: 179 ------------FEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRL 226
                            +L  L      ++ ++         L  L L    L +L    
Sbjct: 281 QAEGCRKIKELDVTHNTQLYLLDCQAAGITELD---LSQNPKLVYLYLNNTELTELD--- 334

Query: 227 FAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSF 275
            +  + L+ L      I          + AL   +  + Q  ++P  + 
Sbjct: 335 VSHNTKLKSLSCVNAHIQDFS--SVGKIPALNNNFEAEGQTITMPKETL 381

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 62.4 bits (152), Expect = 4e-11
 Identities = 27/135 (20%), Positives = 45/135 (33%), Gaps = 14/135 (10%)

Query: 183 EKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNR 242
              V          ++   +   L +L  L+   + + D+       L+ L +L    N 
Sbjct: 21  ASEVAAAFEMQATDTI---SEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNN 75

Query: 243 ISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGL 302
           I+ +D       T L  L  D N+L ++       L  L  L    N  T L     +  
Sbjct: 76  ITTLD---LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKL---DVSQN 126

Query: 303 GRLSALDLRGAGLTN 317
             L+ L+     LT 
Sbjct: 127 PLLTYLNCARNTLTE 141

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 21/122 (17%), Positives = 37/122 (30%), Gaps = 8/122 (6%)

Query: 196 SSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLT 255
            + +   +    +          ++         L+ L  LD   + I+ +     E LT
Sbjct: 7   QTQSFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG--IEKLT 64

Query: 256 ALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGL 315
            L  L    N + ++          L  L    N  T L       L +L+ L+     L
Sbjct: 65  GLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKL 118

Query: 316 TN 317
           T 
Sbjct: 119 TK 120

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 16/123 (13%), Positives = 43/123 (34%), Gaps = 6/123 (4%)

Query: 122 CKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEP 181
           C+ A +  + ++ NP +  L L    +  +D  +   + L+ +   +  + +    G  P
Sbjct: 304 CQAAGITELDLSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQDFSSVGKIP 361

Query: 182 QEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQN 241
              L        +  ++  +T     +   + +  + L+   + +          D   N
Sbjct: 362 --ALNNNFEAEGQTITMPKETL--TNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATN 417

Query: 242 RIS 244
            I+
Sbjct: 418 TIT 420

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 84.3 bits (209), Expect = 4e-19
 Identities = 38/167 (22%), Positives = 72/167 (43%), Gaps = 12/167 (7%)

Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
           D++       +Q      + I+++ + +QF+++L+ + LSHNQ+ ++     +   KL E
Sbjct: 33  DLVSQKELSGVQNFNGDNSNIQSL-AGMQFFTNLKELHLSHNQISDLS--PLKDLTKLEE 89

Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
           L +N N+L ++N    I    L  L L  N L D        L +LE L +  N++  I 
Sbjct: 90  LSVNRNRLKNLNG---IPSACLSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKLKSIV 144

Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTL 294
                 L+ L +L L  N++ +        L  +  + +        
Sbjct: 145 --MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 69.3 bits (170), Expect = 1e-13
 Identities = 39/192 (20%), Positives = 72/192 (37%), Gaps = 32/192 (16%)

Query: 141 LVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIP--------------------IRGFE 180
            + +   I  V       ++    +L    + ++                     + G +
Sbjct: 2   SIQRPTPINQV-FPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQ 60

Query: 181 PQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQ 240
               L EL L+HN++S ++      L  L+ L++  N L++L      P + L  L L  
Sbjct: 61  FFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLN---GIPSACLSRLFLDN 115

Query: 241 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFN 300
           N +   D      L  L IL + +N+L+S+      +L  L  L +  N  T        
Sbjct: 116 NELRDTD--SLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNTGG--LT 169

Query: 301 GLGRLSALDLRG 312
            L +++ +DL G
Sbjct: 170 RLKKVNWIDLTG 181

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 64.3 bits (157), Expect = 4e-12
 Identities = 29/153 (18%), Positives = 58/153 (37%), Gaps = 15/153 (9%)

Query: 166 LSHNQLVNI-PIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPD 224
                +  + P  G       V+  L    ++ +   +   L  ++  N   + ++ L  
Sbjct: 4   QRPTPINQVFPDPGLA---NAVKQNLGKQSVTDL--VSQKELSGVQNFNGDNSNIQSLAG 58

Query: 225 RLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAEL 284
                 ++L+EL L  N+IS +     + LT L  L ++ N+L+++   + I    L+ L
Sbjct: 59  --MQFFTNLKELHLSHNQISDLS--PLKDLTKLEELSVNRNRLKNL---NGIPSACLSRL 111

Query: 285 RVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN 317
            +  N            L  L  L +R   L +
Sbjct: 112 FLDNNELRDTDS--LIHLKNLEILSIRNNKLKS 142

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 64.3 bits (157), Expect = 4e-12
 Identities = 29/140 (20%), Positives = 55/140 (39%), Gaps = 8/140 (5%)

Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
           D+ P+     ++ L +  NR+K + + I   + L  + L +N+L +         + L  
Sbjct: 77  DLSPLKDLTKLEELSVNRNRLKNL-NGIPS-ACLSRLFLDNNELRDTD--SLIHLKNLEI 132

Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
           L + +NKL S+       L  L+VL+L GN + +        L  +  +DL   +     
Sbjct: 133 LSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQKCVNEP 188

Query: 248 QACFEGLTALRILYLDDNQL 267
                 L     +   D + 
Sbjct: 189 VKYQPELYITNTVKDPDGRW 208

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 84.8 bits (209), Expect = 3e-18
 Identities = 34/181 (18%), Positives = 70/181 (38%), Gaps = 13/181 (7%)

Query: 138 IQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSS 197
           +   +     IK +      ++     +L    + +           + ++  N++ + S
Sbjct: 1   MGETITVSTPIKQI-FPDDAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKS 57

Query: 198 VNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTAL 257
           V       L ++  L L GN L D+       L +L  L L +N+I  +     + L  L
Sbjct: 58  VQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS--SLKDLKKL 111

Query: 258 RILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN 317
           + L L+ N +  +     ++L  L  L +G N  T +     + L +L  L L    +++
Sbjct: 112 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISD 167

Query: 318 M 318
           +
Sbjct: 168 I 168

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 82.1 bits (202), Expect = 2e-17
 Identities = 32/147 (21%), Positives = 57/147 (38%), Gaps = 7/147 (4%)

Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
           D+  +     ++ L L++N I  + + +     L+ + L +N++ +I         KL  
Sbjct: 101 DLSSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDT 157

Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
           L L  N++S +      GL  L+ L L  N + DL     A L +L+ L+L         
Sbjct: 158 LSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKP 213

Query: 248 QACFEGLTALRILYLDDNQLRSVPTPS 274
                 L     +   D  L +    S
Sbjct: 214 INHQSNLVVPNTVKNTDGSLVTPEIIS 240

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 80.5 bits (199), Expect = 4e-18
 Identities = 29/129 (22%), Positives = 49/129 (37%), Gaps = 6/129 (4%)

Query: 140 RLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVN 199
            L      I+ +D+ +    + +H+ LS N +    I      E L  L L  N +  + 
Sbjct: 29  ELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK--ISSLSGMENLRILSLGRNLIKKIE 86

Query: 200 NKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQ-ACFEGLTALR 258
           N   +   +L+ L +  N +  L       L +L  L +  N+I+   +      L  L 
Sbjct: 87  NLDAV-ADTLEELWISYNQIASLSG--IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLE 143

Query: 259 ILYLDDNQL 267
            L L  N L
Sbjct: 144 DLLLAGNPL 152

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 13/113 (11%)

Query: 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKL 195
            +++ L L  N IK +++      +L+ + +S+NQ+ +  + G E    L  L +++NK+
Sbjct: 70  ENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS--LSGIEKLVNLRVLYMSNNKI 127

Query: 196 SSVNN-KTFIGLKSLKVLNLRGNFLEDLPD----------RLFAPLSHLEELD 237
           ++         L  L+ L L GN L +              +   L +L++LD
Sbjct: 128 TNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 50.5 bits (121), Expect = 1e-07
 Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 7/119 (5%)

Query: 194 KLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEG 253
                 +      + ++ L+     +E +   L + L   + L L  N I +I      G
Sbjct: 13  IFEERKSVVATEAEKVE-LHGMIPPIEKMDATL-STLKACKHLALSTNNIEKISS--LSG 68

Query: 254 LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG 312
           +  LRIL L  N ++ +          L EL +  N   +L+      L  L  L +  
Sbjct: 69  MENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASLSG--IEKLVNLRVLYMSN 124

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 82.5 bits (203), Expect = 5e-18
 Identities = 28/138 (20%), Positives = 45/138 (32%), Gaps = 24/138 (17%)

Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDL 166
           CP  C  +  +  + C                                +    +L  + +
Sbjct: 1   CPDACCPHGSS-GLRCTRDGALDSL---------------------HHLPGAENLTELYI 38

Query: 167 SHNQ-LVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDR 225
            + Q L ++ +R      +L  L +  + L  V    F     L  LNL  N LE L  +
Sbjct: 39  ENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWK 98

Query: 226 LFAPLSHLEELDLGQNRI 243
               LS L+EL L  N +
Sbjct: 99  TVQGLS-LQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 80.6 bits (198), Expect = 3e-17
 Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 3/111 (2%)

Query: 159 SSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK-LSSVNNKTFIGLKSLKVLNLRGN 217
                +  + +  ++         E L EL + + + L  +  +   GL  L+ L +  +
Sbjct: 8   HGSSGLRCTRDGALDSL-HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66

Query: 218 FLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLR 268
            L  +    F     L  L+L  N +  +     +GL+ L+ L L  N L 
Sbjct: 67  GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 73.6 bits (180), Expect = 7e-15
 Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 1/88 (1%)

Query: 192 HNKLSSVNNKTFIGLKSLKVLNLRGN-FLEDLPDRLFAPLSHLEELDLGQNRISRIDQAC 250
               +  +     G ++L  L +     L+ L  R    L  L  L + ++ +  +    
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 251 FEGLTALRILYLDDNQLRSVPTPSFIYL 278
           F     L  L L  N L S+   +   L
Sbjct: 76  FHFTPRLSRLNLSFNALESLSWKTVQGL 103

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 72.5 bits (177), Expect = 1e-14
 Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 4/108 (3%)

Query: 210 KVLNLRGNFLEDLPDRLFAPLSHLEELDL-GQNRISRIDQACFEGLTALRILYLDDNQLR 268
            +   R   L+ L         +L EL +  Q  +  ++     GL  LR L +  + LR
Sbjct: 12  GLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69

Query: 269 SVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT 316
            V   +F +   L+ L +  N   +L+     GL  L  L L G  L 
Sbjct: 70  FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPLH 116

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 81.9 bits (203), Expect = 7e-18
 Identities = 44/195 (22%), Positives = 74/195 (37%), Gaps = 15/195 (7%)

Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
           D++     P    L L+   +          S LQH+ +    L+ +P    +    L  
Sbjct: 73  DLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELP-DTMQQFAGLET 131

Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRG-NFLEDLPDRL--------FAPLSHLEELDL 238
           L L  N L ++   +   L  L+ L++R    L +LP+ L           L +L+ L L
Sbjct: 132 LTLARNPLRALPA-SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL 190

Query: 239 GQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRV-GLNVFTTLADG 297
               I  +  A    L  L+ L + ++ L ++  P+  +L  L EL + G          
Sbjct: 191 EWTGIRSLP-ASIANLQNLKSLKIRNSPLSALG-PAIHHLPKLEELDLRGCTALRNYPPI 248

Query: 298 AFNGLGRLSALDLRG 312
            F G   L  L L+ 
Sbjct: 249 -FGGRAPLKRLILKD 262

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 58.0 bits (141), Expect = 9e-10
 Identities = 31/139 (22%), Positives = 60/139 (43%), Gaps = 9/139 (6%)

Query: 137 SIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNH-NKL 195
           ++Q L L++  I+++ ++I    +L+ + + ++ L  +         KL EL L     L
Sbjct: 184 NLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALG-PAIHHLPKLEELDLRGCTAL 242

Query: 196 SSVNNKTFIGLKSLKVLNLRG-NFLEDLPDRLFAPLSHLEELDLGQNRISRIDQ--ACFE 252
            +     F G   LK L L+  + L  LP  +   L+ LE+LDL       + +  +   
Sbjct: 243 RNYPP-IFGGRAPLKRLILKDCSNLLTLPLDI-HRLTQLEKLDLRGC--VNLSRLPSLIA 298

Query: 253 GLTALRILYLDDNQLRSVP 271
            L A  I+ +  +    + 
Sbjct: 299 QLPANCIILVPPHLQAQLD 317

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 78.8 bits (195), Expect = 7e-18
 Identities = 37/94 (39%), Positives = 52/94 (55%)

Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
           L+L  NKL S+ +  F  L  L  L+L  N ++ LPD +F  L+ L  L L +N++  + 
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92

Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGML 281
              F+ LT L+ L LD NQL+SVP   F  L  L
Sbjct: 93  NGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSL 126

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 75.4 bits (186), Expect = 1e-16
 Identities = 42/160 (26%), Positives = 72/160 (45%), Gaps = 25/160 (15%)

Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDL 166
           CP  C C+     + C    L  +P  +  S  RL L+ N                    
Sbjct: 1   CPSRCSCSGTE--IRCNSKGLTSVPTGIPSSATRLELESN-------------------- 38

Query: 167 SHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRL 226
              +L ++P   F+   +L +L L+ N++ S+ +  F  L  L +L L  N L+ LP+ +
Sbjct: 39  ---KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGV 95

Query: 227 FAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQ 266
           F  L+ L+EL L  N++  +    F+ LT+L+ ++L  N 
Sbjct: 96  FDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 68.1 bits (167), Expect = 6e-14
 Identities = 38/103 (36%), Positives = 54/103 (52%)

Query: 210 KVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRS 269
             L L  N L+ LP  +F  L+ L +L L QN+I  +    F+ LT L ILYL +N+L+S
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90

Query: 270 VPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG 312
           +P   F  L  L EL +  N   ++ DG F+ L  L  + L  
Sbjct: 91  LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 133

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 19/56 (33%), Positives = 31/56 (55%)

Query: 255 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDL 310
           ++   L L+ N+L+S+P   F  L  L +L +  N   +L DG F+ L +L+ L L
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL 83

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 81.7 bits (201), Expect = 2e-17
 Identities = 43/221 (19%), Positives = 73/221 (33%), Gaps = 19/221 (8%)

Query: 52  ILKSLLIIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDC 111
             + L      V     L+  +        +     W LL    L+  +           
Sbjct: 347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLL------- 399

Query: 112 DCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQL 171
               ETL        +D +       ++   L  N +         Y+ ++ + L+H  L
Sbjct: 400 -YEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVL-----KMEYADVRVLHLAHKDL 453

Query: 172 VNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLS 231
             +     E    +  L L+HN+L ++       L+ L+VL    N LE++     A L 
Sbjct: 454 TVLC--HLEQLLLVTHLDLSHNRLRALP-PALAALRCLEVLQASDNALENVDG--VANLP 508

Query: 232 HLEELDLGQNRISRIDQ-ACFEGLTALRILYLDDNQLRSVP 271
            L+EL L  NR+ +            L +L L  N L    
Sbjct: 509 RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 77.1 bits (189), Expect = 1e-15
 Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 5/120 (4%)

Query: 130 IPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQ 189
           +       ++ L L +  +  +   ++    + H+DLSHN+L  +P         L  LQ
Sbjct: 435 VLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALP-PALAALRCLEVLQ 492

Query: 190 LNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPD-RLFAPLSHLEELDLGQNRISRIDQ 248
            + N L +V+      L  L+ L L  N L+     +       L  L+L  N + + + 
Sbjct: 493 ASDNALENVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 69.0 bits (168), Expect = 4e-13
 Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 6/106 (5%)

Query: 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKL 195
             +  L L +NR++ +  A+     L+ +  S N L N+   G     +L EL L +N+L
Sbjct: 463 LLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCNNRL 520

Query: 196 SSVNN-KTFIGLKSLKVLNLRGNFLEDLPD---RLFAPLSHLEELD 237
                 +  +    L +LNL+GN L        RL   L  +  + 
Sbjct: 521 QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 59.8 bits (144), Expect = 4e-10
 Identities = 38/223 (17%), Positives = 68/223 (30%), Gaps = 27/223 (12%)

Query: 112 DCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQL 171
             + +  V+              +  + R  L   +   + S ++    LQ ++  +   
Sbjct: 325 SDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWC 384

Query: 172 VNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGL---------------------KSLK 210
           +   I      + L+  +      S++     +                         ++
Sbjct: 385 LLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVR 444

Query: 211 VLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSV 270
           VL+L    L  L       L  +  LDL  NR+  +       L  L +L   DN L +V
Sbjct: 445 VLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENV 501

Query: 271 PTPSFIYLGMLAELRVGLNVFTTLAD-GAFNGLGRLSALDLRG 312
                  L  L EL +  N     A         RL  L+L+G
Sbjct: 502 --DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 542

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 76.5 bits (189), Expect = 7e-17
 Identities = 22/144 (15%), Positives = 47/144 (32%), Gaps = 6/144 (4%)

Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
           D+  I    +I+ L +         + I   S+L+ + +    + +  I        L  
Sbjct: 58  DLTGIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116

Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGN-FLEDLPDRLFAPLSHLEELDLGQNRISRI 246
           L ++H+            L  +  ++L  N  + D+       L  L+ L++  + +   
Sbjct: 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDY 174

Query: 247 DQACFEGLTALRILYLDDNQLRSV 270
                E    L  LY     +   
Sbjct: 175 R--GIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 70.0 bits (172), Expect = 2e-14
 Identities = 28/176 (15%), Positives = 61/176 (34%), Gaps = 9/176 (5%)

Query: 137 SIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLS 196
           +    +L  +    +  A    +SL ++ L++  + ++   G E    + +L +N+   +
Sbjct: 24  AYLNGLLGQSSTANITEA--QMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHAT 79

Query: 197 SVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTA 256
           + N     GL +L+ L + G  +        + L+ L  LD+  +            L  
Sbjct: 80  NYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPK 137

Query: 257 LRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG 312
           +  + L  N   +   P    L  L  L +  +              +L+ L    
Sbjct: 138 VNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFS 190

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 78.0 bits (193), Expect = 4e-16
 Identities = 46/189 (24%), Positives = 76/189 (40%), Gaps = 15/189 (7%)

Query: 130 IPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLV-NIPIRGFEPQEKLVEL 188
           + ++   +++ L +  N   T    +   S+LQH+D+S N+L  +   R      +L  L
Sbjct: 194 VDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFS-RAISTCTELKLL 252

Query: 189 QLNHNKLS----SVNNKTFIGLKSLKVLNLRGNFLE-DLPDRLFAPLSHLEELDLGQNRI 243
            ++ N+       +       LKSL+ L+L  N    ++PD L      L  LDL  N  
Sbjct: 253 NISSNQFVGPIPPLP------LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 306

Query: 244 SRIDQACFEGLTALRILYLDDNQLR-SVPTPSFIYLGMLAELRVGLNVFT-TLADGAFNG 301
                  F   + L  L L  N     +P  + + +  L  L +  N F+  L +   N 
Sbjct: 307 YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL 366

Query: 302 LGRLSALDL 310
              L  LDL
Sbjct: 367 SASLLTLDL 375

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 70.3 bits (173), Expect = 2e-13
 Identities = 52/195 (26%), Positives = 74/195 (37%), Gaps = 18/195 (9%)

Query: 130 IPITLNPSIQRLVLKYNRIK-TVDSAIQFY-SSLQHVDLSHNQLV-NIPIRGFEPQEKLV 186
           IP     S+Q L L  N+    +   +     +L  +DLS N     +P   F     L 
Sbjct: 263 IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP-PFFGSCSLLE 321

Query: 187 ELQLNHNKLS-SVNNKTFIGLKSLKVLNLRGNFLED-LPDRLFAPLSHLEELDLGQNRIS 244
            L L+ N  S  +   T + ++ LKVL+L  N     LP+ L    + L  LDL  N  S
Sbjct: 322 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381

Query: 245 -RI-DQACFEGLTALRILYLDDNQLR-SVPTPSFIYLGMLAELRVGLNVFTTLADGA--- 298
             I    C      L+ LYL +N     +P P+      L  L +  N  +    G    
Sbjct: 382 GPILPNLCQNPKNTLQELYLQNNGFTGKIP-PTLSNCSELVSLHLSFNYLS----GTIPS 436

Query: 299 -FNGLGRLSALDLRG 312
               L +L  L L  
Sbjct: 437 SLGSLSKLRDLKLWL 451

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 69.6 bits (171), Expect = 3e-13
 Identities = 39/188 (20%), Positives = 62/188 (32%), Gaps = 11/188 (5%)

Query: 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLV-NIPIRGFEPQ-EKLVELQLNHN 193
             ++ L L  + I    S  +  +SL  +DLS N L   +           L  L ++ N
Sbjct: 77  TGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSN 136

Query: 194 KLS-SVNNKTFIGLKSLKVLNLRGNFLE-DLPDRLFAP--LSHLEELDLGQNRIS-RIDQ 248
            L         + L SL+VL+L  N +                L+ L +  N+IS  +D 
Sbjct: 137 TLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD- 195

Query: 249 ACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSAL 308
                   L  L +  N   S   P       L  L +  N  +     A +    L  L
Sbjct: 196 --VSRCVNLEFLDVSSNNF-STGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 252

Query: 309 DLRGAGLT 316
           ++      
Sbjct: 253 NISSNQFV 260

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 63.4 bits (155), Expect = 3e-11
 Identities = 41/161 (25%), Positives = 66/161 (40%), Gaps = 7/161 (4%)

Query: 136 PSIQRLVLKYNRIK-TVDSAIQFYSSLQHVDLSHNQLV-NIPIRGFEPQEKLVELQLNHN 193
            ++Q L L+ N     +   +   S L  + LS N L   IP        KL +L+L  N
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP-SSLGSLSKLRDLKLWLN 452

Query: 194 KLSSVNNKTFIGLKSLKVLNLRGNFLE-DLPDRLFAPLSHLEELDLGQNRISRIDQACFE 252
            L     +  + +K+L+ L L  N L  ++P  L    ++L  + L  NR++        
Sbjct: 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN-CTNLNWISLSNNRLTGEIPKWIG 511

Query: 253 GLTALRILYLDDNQLR-SVPTPSFIYLGMLAELRVGLNVFT 292
            L  L IL L +N    ++P         L  L +  N+F 
Sbjct: 512 RLENLAILKLSNNSFSGNIP-AELGDCRSLIWLDLNTNLFN 551

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.9 bits (120), Expect = 6e-07
 Identities = 32/146 (21%), Positives = 54/146 (36%), Gaps = 17/146 (11%)

Query: 132 ITLNPSIQRLVLKYNRIK---TVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQE----- 183
           I  +   +      N ++        +   S+    +++          G          
Sbjct: 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY-----GGHTSPTFDNNG 632

Query: 184 KLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLE-DLPDRLFAPLSHLEELDLGQNR 242
            ++ L +++N LS    K    +  L +LNL  N +   +PD     L  L  LDL  N+
Sbjct: 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE-VGDLRGLNILDLSSNK 691

Query: 243 IS-RIDQACFEGLTALRILYLDDNQL 267
           +  RI QA    LT L  + L +N L
Sbjct: 692 LDGRIPQA-MSALTMLTEIDLSNNNL 716

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 37/195 (18%), Positives = 62/195 (31%), Gaps = 23/195 (11%)

Query: 128 DVIPITL--NPSIQRLVLKYNRIK-TVDSAIQFYSSLQHVDLSHNQLV-NIPIRGFEPQE 183
             IP  +    ++  L L  N     + + +    SL  +DL+ N     IP      Q 
Sbjct: 504 GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP-AAMFKQS 562

Query: 184 KLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLE---DLPDRLFAPLSHLEELDLGQ 240
                 +  N ++             K  +  GN LE      ++L   LS     ++  
Sbjct: 563 GK----IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR-LSTRNPCNITS 617

Query: 241 NRISRIDQACFEGLTALRILYLDDNQLR-SVPTPSFIYLGMLAELRVGLNVFTTLADG-- 297
                     F+   ++  L +  N L   +P      +  L  L +G N  +    G  
Sbjct: 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP-KEIGSMPYLFILNLGHNDIS----GSI 672

Query: 298 --AFNGLGRLSALDL 310
                 L  L+ LDL
Sbjct: 673 PDEVGDLRGLNILDL 687

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 76.1 bits (187), Expect = 6e-16
 Identities = 37/196 (18%), Positives = 65/196 (33%), Gaps = 18/196 (9%)

Query: 130 IPITLNPSIQRLVLKYNRIKTVDSAIQ-----FYSSLQHVDLSHNQLVNIPIRGFEPQEK 184
           +     P +  L L+     T D+ +          L+ + ++    +N           
Sbjct: 115 LLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA 174

Query: 185 LVELQLNHNKLSS----VNNKTFIGLKSLKVLNLRGNFLEDLPD---RLFAPLSHLEELD 237
           L  L L+ N        ++    +   +L+VL LR   +E        L A    L+ LD
Sbjct: 175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLD 234

Query: 238 LGQNRISRI-DQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD 296
           L  N +         +  + L  L L    L+ VP         L+ L +  N       
Sbjct: 235 LSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRLDRNPS 291

Query: 297 GAFNGLGRLSALDLRG 312
              + L ++  L L+G
Sbjct: 292 --PDELPQVGNLSLKG 305

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 74.9 bits (184), Expect = 2e-15
 Identities = 33/175 (18%), Positives = 60/175 (34%), Gaps = 14/175 (8%)

Query: 127 LDVIPITLNPSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQE-- 183
           L  +   L P ++ L +            ++ + +L  +DLS N  +             
Sbjct: 140 LAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199

Query: 184 --KLVELQLNHNKLSSVN---NKTFIGLKSLKVLNLRGNFLEDLPDRL-FAPLSHLEELD 237
              L  L L +  + + +   +        L+ L+L  N L D          S L  L+
Sbjct: 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259

Query: 238 LGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFT 292
           L    + ++ +        L +L L  N+L   P+P    L  +  L +  N F 
Sbjct: 260 LSFTGLKQVPKGLP---AKLSVLDLSYNRLDRNPSPDE--LPQVGNLSLKGNPFL 309

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 67.2 bits (164), Expect = 7e-13
 Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 18/198 (9%)

Query: 137 SIQRLVLKYNRI--KTVDSAIQF--YSSLQHVDLSHNQLV-NIPIRGFEPQ-EKLVELQL 190
           S++RL ++  RI  + +  A++    S LQ + L + ++    P    E     L  L L
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 191 NHNKLSSVNNKT----FIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISR- 245
            +   ++ +             LKVL++      +           L  LDL  N     
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE 188

Query: 246 ---IDQACFEGLTALRILYLDDNQLRSVPTP---SFIYLGMLAELRVGLNVFTTL-ADGA 298
              I   C      L++L L +  + +              L  L +  N         +
Sbjct: 189 RGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248

Query: 299 FNGLGRLSALDLRGAGLT 316
            +   +L++L+L   GL 
Sbjct: 249 CDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 53.7 bits (129), Expect = 2e-08
 Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 24/110 (21%)

Query: 136 PSIQRLVLKYNRIKTVDSAIQFY----SSLQHVDLSHNQLVNIPIR-GFEPQEKLVELQL 190
           P++Q L L+   ++T              LQ +DLSHN L +       +   +L  L L
Sbjct: 201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL 260

Query: 191 NHNKLSSV--------------NNK-----TFIGLKSLKVLNLRGNFLED 221
           +   L  V               N+     +   L  +  L+L+GN   D
Sbjct: 261 SFTGLKQVPKGLPAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLD 310

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 68.9 bits (169), Expect = 2e-14
 Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 4/121 (3%)

Query: 147 RIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRG-FEPQEKLVELQLNHNKLSSVNNKTFIG 205
           R   ++   +  S ++ + L +++     + G  +  E+L  L   +  L+S+ N     
Sbjct: 5   RRIHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN--LPK 62

Query: 206 LKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQ-ACFEGLTALRILYLDD 264
           L  LK L L  N +    + L     +L  L+L  N+I  +      + L  L+ L L +
Sbjct: 63  LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122

Query: 265 N 265
            
Sbjct: 123 C 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 60.1 bits (146), Expect = 2e-11
 Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 5/114 (4%)

Query: 137 SIQRLVLKYNRIK--TVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK 194
            ++ LVL  +R     ++     +  L+ +   +  L +I         KL +L+L+ N+
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA--NLPKLNKLKKLELSDNR 75

Query: 195 LSSVNNKTFIGLKSLKVLNLRGNFLEDLPD-RLFAPLSHLEELDLGQNRISRID 247
           +S           +L  LNL GN ++DL        L +L+ LDL    ++ ++
Sbjct: 76  VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 57.0 bits (138), Expect = 3e-10
 Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 5/105 (4%)

Query: 183 EKLVELQLNHNKLSSVNNKTFIG-LKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQN 241
             + EL L++++ +    +      + L+ L+     L  + +     L+ L++L+L  N
Sbjct: 17  SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN--LPKLNKLKKLELSDN 74

Query: 242 RISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRV 286
           R+S   +   E    L  L L  N+++ + T     L  L  L+ 
Sbjct: 75  RVSGGLEVLAEKCPNLTHLNLSGNKIKDLST--IEPLKKLENLKS 117

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.7 bits (106), Expect = 6e-06
 Identities = 27/116 (23%), Positives = 40/116 (34%), Gaps = 5/116 (4%)

Query: 198 VNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTAL 257
           + N+T   +K L + N R N  +     L      LE L      ++ I       L  L
Sbjct: 11  LRNRTPSDVKELVLDNSRSNEGKLE--GLTDEFEELEFLSTINVGLTSIAN--LPKLNKL 66

Query: 258 RILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD-GAFNGLGRLSALDLRG 312
           + L L DN++             L  L +  N    L+       L  L +LDL  
Sbjct: 67  KKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 67.8 bits (166), Expect = 7e-14
 Identities = 28/123 (22%), Positives = 43/123 (34%), Gaps = 7/123 (5%)

Query: 164 VDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLP 223
           V L+   +       +    +  EL L   K+  + N     L     ++   N +  L 
Sbjct: 2   VKLTAELIEQAA--QYTNAVRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIRKLD 58

Query: 224 DRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAE 283
              F  L  L+ L +  NRI RI +   + L  L  L L +N L  +       L  L  
Sbjct: 59  G--FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGD--LDPLASLKS 114

Query: 284 LRV 286
           L  
Sbjct: 115 LTY 117

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 66.6 bits (163), Expect = 2e-13
 Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 3/112 (2%)

Query: 137 SIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLS 196
             + L L+  +I  +++          +D S N++    + GF    +L  L +N+N++ 
Sbjct: 20  RDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIR--KLDGFPLLRRLKTLLVNNNRIC 77

Query: 197 SVNNKTFIGLKSLKVLNLRGNFLEDLPD-RLFAPLSHLEELDLGQNRISRID 247
            +       L  L  L L  N L +L D    A L  L  L + +N ++   
Sbjct: 78  RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 129

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 65.4 bits (160), Expect = 5e-13
 Identities = 22/114 (19%), Positives = 45/114 (39%), Gaps = 4/114 (3%)

Query: 159 SSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNF 218
              + +DL   ++  I   G    ++   +  + N++  ++   F  L+ LK L +  N 
Sbjct: 19  VRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNNR 75

Query: 219 LEDLPDRLFAPLSHLEELDLGQNRISRIDQ-ACFEGLTALRILYLDDNQLRSVP 271
           +  + + L   L  L EL L  N +  +        L +L  L +  N + +  
Sbjct: 76  ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 129

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 27/126 (21%), Positives = 50/126 (39%), Gaps = 6/126 (4%)

Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
           ++L    +       +      + L+LRG  +  + + L A L   + +D   N I ++D
Sbjct: 2   VKLTAELIEQAAQ--YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLD 58

Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD-GAFNGLGRLS 306
              F  L  L+ L +++N++  +       L  L EL +  N    L D      L  L+
Sbjct: 59  --GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLT 116

Query: 307 ALDLRG 312
            L +  
Sbjct: 117 YLCILR 122

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.8 bits (122), Expect = 6e-08
 Identities = 21/118 (17%), Positives = 45/118 (38%), Gaps = 5/118 (4%)

Query: 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKL 195
                +    N I+ +D        L+ + +++N++  I     +    L EL L +N L
Sbjct: 42  DQFDAIDFSDNEIRKLDG-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 100

Query: 196 SSVNN-KTFIGLKSLKVLNLRGNFLEDLPD---RLFAPLSHLEELDLGQNRISRIDQA 249
             + +      LKSL  L +  N + +       +   +  +  LD  + ++    +A
Sbjct: 101 VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEA 158

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 65.9 bits (161), Expect = 3e-13
 Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 4/118 (3%)

Query: 156 QFYSSLQHVDLSHNQLVNIPIRGF-EPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNL 214
           +  ++++ + L + +  +  I G       L  L L +  L SV+N     L  LK L L
Sbjct: 21  RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN--LPKLPKLKKLEL 78

Query: 215 RGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQ-ACFEGLTALRILYLDDNQLRSVP 271
             N +    D L   L +L  L+L  N++  I      + L  L+ L L + ++ ++ 
Sbjct: 79  SENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN 136

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 65.1 bits (159), Expect = 5e-13
 Identities = 27/124 (21%), Positives = 55/124 (44%), Gaps = 6/124 (4%)

Query: 141 LVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNN 200
           L    +    ++     + +L+ + L +  L+++         KL +L+L+ N++    +
Sbjct: 31  LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVS--NLPKLPKLKKLELSENRIFGGLD 88

Query: 201 KTFIGLKSLKVLNLRGNFLEDLPD-RLFAPLSHLEELDLGQNRISRID---QACFEGLTA 256
                L +L  LNL GN L+D+        L  L+ LDL    ++ ++   ++ F+ L  
Sbjct: 89  MLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQ 148

Query: 257 LRIL 260
           L  L
Sbjct: 149 LTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 55.9 bits (135), Expect = 1e-09
 Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 6/129 (4%)

Query: 159 SSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIG-LKSLKVLNLRGN 217
            S     +   + +++ +R   P   + EL L++ K +    +       +L+ L+L   
Sbjct: 1   GSSGSSGMDMKRRIHLELRNRTPAA-VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV 59

Query: 218 FLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIY 277
            L  + +     L  L++L+L +NRI        E L  L  L L  N+L+ + T     
Sbjct: 60  GLISVSN--LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDIST--LEP 115

Query: 278 LGMLAELRV 286
           L  L  L+ 
Sbjct: 116 LKKLECLKS 124

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 25/126 (19%), Positives = 45/126 (35%), Gaps = 5/126 (3%)

Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
           + +       + N+T   ++ L VL+   +    +   L A   +LE L L    +  + 
Sbjct: 8   MDMKRRIHLELRNRTPAAVREL-VLDNCKSNDGKIEG-LTAEFVNLEFLSLINVGLISVS 65

Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD-GAFNGLGRLS 306
                 L  L+ L L +N++          L  L  L +  N    ++       L  L 
Sbjct: 66  --NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLK 123

Query: 307 ALDLRG 312
           +LDL  
Sbjct: 124 SLDLFN 129

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 60.7 bits (148), Expect = 2e-11
 Identities = 27/74 (36%), Positives = 41/74 (55%)

Query: 208 SLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQL 267
           + +VL L  N +  L   +F  L+ L  LDL  N+++ +    F+ LT L  L L+DNQL
Sbjct: 31  TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90

Query: 268 RSVPTPSFIYLGML 281
           +S+P  +F  L  L
Sbjct: 91  KSIPRGAFDNLKSL 104

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 56.9 bits (138), Expect = 5e-10
 Identities = 24/79 (30%), Positives = 40/79 (50%)

Query: 187 ELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRI 246
            L L  N+++ +    F  L  L  L+L  N L  LP  +F  L+ L +L L  N++  I
Sbjct: 34  VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI 93

Query: 247 DQACFEGLTALRILYLDDN 265
            +  F+ L +L  ++L +N
Sbjct: 94  PRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 55.7 bits (135), Expect = 1e-09
 Identities = 33/135 (24%), Positives = 53/135 (39%), Gaps = 25/135 (18%)

Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDL 166
           CP  C C+  T  V C   +L  +P                     + I   ++ Q + L
Sbjct: 3   CPSQCSCSGTT--VDCSGKSLASVP---------------------TGIP--TTTQVLYL 37

Query: 167 SHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRL 226
             NQ+  +    F+   +L  L L++N+L+ +    F  L  L  L+L  N L+ +P   
Sbjct: 38  YDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGA 97

Query: 227 FAPLSHLEELDLGQN 241
           F  L  L  + L  N
Sbjct: 98  FDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 53.0 bits (128), Expect = 1e-08
 Identities = 26/79 (32%), Positives = 42/79 (53%)

Query: 234 EELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTT 293
           + L L  N+I++++   F+ LT L  L LD+NQL  +P   F  L  L +L +  N   +
Sbjct: 33  QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92

Query: 294 LADGAFNGLGRLSALDLRG 312
           +  GAF+ L  L+ + L  
Sbjct: 93  IPRGAFDNLKSLTHIWLLN 111

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 42.6 bits (101), Expect = 4e-05
 Identities = 20/57 (35%), Positives = 28/57 (49%)

Query: 255 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLR 311
           T  ++LYL DNQ+  +    F  L  L  L +  N  T L  G F+ L +L+ L L 
Sbjct: 30  TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 60.3 bits (147), Expect = 3e-11
 Identities = 24/74 (32%), Positives = 38/74 (51%)

Query: 208 SLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQL 267
             + L L  N +  L   +F  L +L++L    N+++ I    F+ LT L  L L+DN L
Sbjct: 34  DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93

Query: 268 RSVPTPSFIYLGML 281
           +S+P  +F  L  L
Sbjct: 94  KSIPRGAFDNLKSL 107

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 56.1 bits (136), Expect = 9e-10
 Identities = 34/141 (24%), Positives = 55/141 (39%), Gaps = 26/141 (18%)

Query: 101 HQASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSS 160
           H ++  CP  C C+     V C+   L  +P                     + I   + 
Sbjct: 1   HHSAG-CPSQCSCDQTL--VNCQNIRLASVP---------------------AGIP--TD 34

Query: 161 LQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLE 220
            Q + L++NQ+  +    F+    L +L  N NKL+++    F  L  L  L+L  N L+
Sbjct: 35  KQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK 94

Query: 221 DLPDRLFAPLSHLEELDLGQN 241
            +P   F  L  L  + L  N
Sbjct: 95  SIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 24/79 (30%), Positives = 43/79 (54%)

Query: 234 EELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTT 293
           + L L  N+I++++   F+ L  L+ LY + N+L ++PT  F  L  L +L +  N   +
Sbjct: 36  QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95

Query: 294 LADGAFNGLGRLSALDLRG 312
           +  GAF+ L  L+ + L  
Sbjct: 96  IPRGAFDNLKSLTHIYLYN 114

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 42.6 bits (101), Expect = 4e-05
 Identities = 18/57 (31%), Positives = 30/57 (52%)

Query: 255 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLR 311
           T  + L+L++NQ+  +    F +L  L +L    N  T +  G F+ L +L+ LDL 
Sbjct: 33  TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 61.5 bits (150), Expect = 1e-10
 Identities = 45/208 (21%), Positives = 73/208 (35%), Gaps = 46/208 (22%)

Query: 135 NPSIQRLVLKYNRIKTVD-----SAIQFYSSLQHVDLSHNQLVNIPIRGF-----EPQEK 184
           +  IQ+L L+   +         S ++   +LQ + LS N L +  ++       +PQ +
Sbjct: 84  SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCR 143

Query: 185 LVELQLNHNKLSSVNNKTF----IGLKSLKVLNLRGNFLED-----LPDRLFAPLSHLEE 235
           L +LQL +  LS+ + +            K L +  N + +     L   L      LE 
Sbjct: 144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEA 203

Query: 236 LDLGQNRISRIDQAC------FEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLN 289
           L L    ++     C           +LR L L  N+L  V        GM         
Sbjct: 204 LKLESCGVT--SDNCRDLCGIVASKASLRELALGSNKLGDV--------GMAE------- 246

Query: 290 VFTTLADGAFNGLGRLSALDLRGAGLTN 317
               L  G  +   RL  L +   G+T 
Sbjct: 247 ----LCPGLLHPSSRLRTLWIWECGITA 270

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 33/156 (21%), Positives = 60/156 (38%), Gaps = 23/156 (14%)

Query: 135 NPSIQRLVLKYNRI-----KTVDSAIQFYSSLQHVDLSHNQLVNIPIRGF-----EPQEK 184
               Q + L    +     K + SA++   +L  ++L  N+L ++ +         P  K
Sbjct: 27  LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCK 86

Query: 185 LVELQLNHNKLSSVNNK----TFIGLKSLKVLNLRGNFLED-----LPDRLFAPLSHLEE 235
           + +L L +  L+         T   L +L+ L+L  N L D     L + L  P   LE+
Sbjct: 87  IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEK 146

Query: 236 LDLGQNRISRID-QACFEGL---TALRILYLDDNQL 267
           L L    +S    +     L      + L + +N +
Sbjct: 147 LQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 58.4 bits (142), Expect = 9e-10
 Identities = 30/156 (19%), Positives = 57/156 (36%), Gaps = 23/156 (14%)

Query: 135 NPSIQRLVLKYNRI-----KTVDSAIQFYSSLQHVDLSHNQLVNIPIRGF-----EPQEK 184
              ++ L L+   +     + +   +   +SL+ + L  N+L ++ +         P  +
Sbjct: 198 PCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSR 257

Query: 185 LVELQLNHNKLSSVNNKTF----IGLKSLKVLNLRGNFLED-----LPDRLFAPLSHLEE 235
           L  L +    +++             +SLK L+L GN L D     L + L  P   LE 
Sbjct: 258 LRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLES 317

Query: 236 LDLGQNRISRID-QACFEGL---TALRILYLDDNQL 267
           L +     +          L     L  L + +N+L
Sbjct: 318 LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL 353

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 52.7 bits (127), Expect = 7e-08
 Identities = 30/149 (20%), Positives = 55/149 (36%), Gaps = 23/149 (15%)

Query: 135 NPSIQRLVLKYNRI-----KTVDSAIQFYSSLQHVDLSHNQLVNIPIRGF-----EPQEK 184
              ++ L +K             S +     L  + +S+N+L +  +R       +P   
Sbjct: 312 GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSV 371

Query: 185 LVELQLNHNKLSSVNNKTF----IGLKSLKVLNLRGNFLED-----LPDRLFAPLSHLEE 235
           L  L L    +S  +  +     +   SL+ L+L  N L D     L + +  P   LE+
Sbjct: 372 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 431

Query: 236 LDLGQNRISRIDQACFEGL----TALRIL 260
           L L     S   +   + L     +LR++
Sbjct: 432 LVLYDIYWSEEMEDRLQALEKDKPSLRVI 460

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 18/125 (14%)

Query: 159 SSLQHVDLSHNQLVNIPIRGFEPQ-EKLVELQLNHNKLSSVN----NKTFIGLKSLKVLN 213
             +Q +D+   +L +       P  ++   ++L+   L+       +       +L  LN
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 214 LRGNFLED-----LPDRLFAPLSHLEELDLGQNRISRIDQAC------FEGLTALRILYL 262
           LR N L D     +   L  P   +++L L    ++     C         L  L+ L+L
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT--GAGCGVLSSTLRTLPTLQELHL 120

Query: 263 DDNQL 267
            DN L
Sbjct: 121 SDNLL 125

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 32/151 (21%), Positives = 49/151 (32%), Gaps = 35/151 (23%)

Query: 132 ITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLN 191
           +    S++ L L  N +   + A     +L                   P  +L  L + 
Sbjct: 280 LRAKESLKELSLAGNEL-GDEGARLLCETLLE-----------------PGCQLESLWVK 321

Query: 192 HNKLSSVNNKTFIGL----KSLKVLNLRGNFLED-----LPDRLFAPLSHLEELDLGQNR 242
               ++     F  +    + L  L +  N LED     L   L  P S L  L L    
Sbjct: 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381

Query: 243 ISRIDQAC------FEGLTALRILYLDDNQL 267
           +S  D +C           +LR L L +N L
Sbjct: 382 VS--DSSCSSLAATLLANHSLRELDLSNNCL 410

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.0 bits (147), Expect = 2e-10
 Identities = 61/378 (16%), Positives = 121/378 (32%), Gaps = 132/378 (34%)

Query: 11  KVQGQLD-EIFWI---------DILD-VTYILYKLHPGFQNNPK--SNFKSPTEILKSLL 57
           KVQ ++D +IFW+          +L+ +  +LY++ P + +     SN K     +++  
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA-- 232

Query: 58  IIPFEVRILNKLRIFINDSVLFSSVSDITMWS-------LLVTT-------AL------- 96
               E+R L K + + N  ++  +V +   W+       +L+TT        L       
Sbjct: 233 ----ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288

Query: 97  LLLVHQASAFCPPDCDCNDETL-----VVTCKEANL-----DVIPITLNPSIQRLV---- 142
           + L H +    P      DE        + C+  +L        P  L+  I   +    
Sbjct: 289 ISLDHHSMTLTP------DEVKSLLLKYLDCRPQDLPREVLTTNPRRLS-IIAESIRDGL 341

Query: 143 -----LKYNRIKTVDSAIQ-FYSSLQHVDLSHN--QL------VNIPIR----------G 178
                 K+     + + I+   + L+  +      +L       +IP             
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401

Query: 179 FEPQEKLVELQLNHNK-LSSVNNKTF-IGLKSL------KVLNLRG---------NFLED 221
            +    + +L   H   L     K   I + S+      K+ N            N  + 
Sbjct: 402 SDVMVVVNKL---HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458

Query: 222 LPDRLFAPLS-----------HLEELDLGQNRISRIDQACFEGLTALRILYLD----DNQ 266
                  P             HL+ ++  +             +T  R+++LD    + +
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPER------------MTLFRMVFLDFRFLEQK 506

Query: 267 LRSVPTPSFIYLGMLAEL 284
           +R   T       +L  L
Sbjct: 507 IRHDSTAWNASGSILNTL 524

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 37/230 (16%), Positives = 68/230 (29%), Gaps = 49/230 (21%)

Query: 135 NPSIQRLVLKYNRI-----KTVDSAIQFYSSLQHVDLSHNQLVNIPIR----GFEPQEKL 185
             SI+   LK + I     K+V + +    S++ + LS N +     R        ++ L
Sbjct: 3   RFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL 62

Query: 186 VELQLNHNKLSSVNNKTFIGLK----------SLKVLNLRGNFLEDLPDRLFAPL----S 231
              + +      V ++    L+           L  + L  N                 +
Sbjct: 63  EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT 122

Query: 232 HLEELDLGQNRIS-------------RIDQACFEGLTALRILYLDDNQLRSVPTPS---- 274
            LE L L  N +                     +    LR +    N+L +         
Sbjct: 123 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182

Query: 275 FIYLGMLAELRVGLNVFTTLADGAFNGLGR-------LSALDLRGAGLTN 317
           F    +L  +++  N      +G  + L         L  LDL+    T+
Sbjct: 183 FQSHRLLHTVKMVQNGIR--PEGIEHLLLEGLAYCQELKVLDLQDNTFTH 230

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 49.7 bits (119), Expect = 6e-07
 Identities = 30/160 (18%), Positives = 52/160 (32%), Gaps = 27/160 (16%)

Query: 135 NPSIQRLVLKYNRI------KTVDSAIQFYSSLQHVDLSHNQLVNIPIR----GFEPQEK 184
           +  +  + +  N I        +   + +   L+ +DL  N   ++         +    
Sbjct: 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 245

Query: 185 LVELQLNHNKLSSVNNKTFI-GLK-----SLKVLNLRGNFLED-----LPDRLFAPLSHL 233
           L EL LN   LS+      +          L+ L L+ N +E      L   +   +  L
Sbjct: 246 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 305

Query: 234 EELDLGQNRISRIDQAC------FEGLTALRILYLDDNQL 267
             L+L  NR S  D         F       +  LDD + 
Sbjct: 306 LFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEE 345

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 28/174 (16%), Positives = 58/174 (33%), Gaps = 39/174 (22%)

Query: 132 ITLNPSIQRLVLKYNRI--------------KTVDSAIQFYSSLQHVDLSHNQLVNIPIR 177
           ++ +  ++ L L  N +                V+   +    L+ +    N+L N  ++
Sbjct: 118 LSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK 177

Query: 178 ----GFEPQEKLVELQLNHNKLSSVNNKTFIGL-----KSLKVLNLRGNFLED-----LP 223
                F+    L  +++  N +     +  +       + LKVL+L+ N         L 
Sbjct: 178 EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA 237

Query: 224 DRLFAPLSHLEELDLGQNRISRIDQAC---FEGL-----TALRILYLDDNQLRS 269
             L     +L EL L    +S   +      +         L+ L L  N++  
Sbjct: 238 IAL-KSWPNLRELGLNDCLLS--ARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 53.6 bits (129), Expect = 3e-08
 Identities = 26/127 (20%), Positives = 45/127 (35%), Gaps = 19/127 (14%)

Query: 159 SSLQHVDLSHNQLVNIPIRGF-----EPQEKLVELQLNHNKLSSVNNKTFI-GLKSLKVL 212
           SSL+ ++L+  ++  +            +  L E+ L   +L     +T +      + L
Sbjct: 72  SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKL 131

Query: 213 NLRGNFLED-----LPDRLFAPLSHLEELDLGQNRISRIDQAC---FEGL---TALRILY 261
            L+ N L       L D L      +  L L  N ++          EGL   T++  L 
Sbjct: 132 GLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLT--AAGVAVLMEGLAGNTSVTHLS 189

Query: 262 LDDNQLR 268
           L    L 
Sbjct: 190 LLHTGLG 196

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 53.3 bits (129), Expect = 3e-08
 Identities = 30/121 (24%), Positives = 44/121 (36%), Gaps = 15/121 (12%)

Query: 159 SSLQHVDLSHNQLVNIPIRGFEPQE----KLVELQLNHNKLSSVNNKTFIGLKSLKVLNL 214
                + +S N+L      G  P       L  + L+ N L    +  F   K+ + ++L
Sbjct: 174 KLFTSMTISRNRLT-----GKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228

Query: 215 RGNFLE-DLPDRLFAPLSHLEELDLGQNRIS-RIDQACFEGLTALRILYLDDNQLR-SVP 271
             N L  DL         +L  LDL  NRI   + Q     L  L  L +  N L   +P
Sbjct: 229 AKNSLAFDLGK--VGLSKNLNGLDLRNNRIYGTLPQG-LTQLKFLHSLNVSFNNLCGEIP 285

Query: 272 T 272
            
Sbjct: 286 Q 286

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 45.2 bits (108), Expect = 1e-05
 Identities = 25/161 (15%), Positives = 50/161 (31%), Gaps = 31/161 (19%)

Query: 159 SSLQHVDLSHNQLV-NIP------------------IRGFEPQE-----KLVELQLNHNK 194
           + L ++ ++H  +   IP                  + G  P        LV +  + N+
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160

Query: 195 LSSVNNKTFIGLKSL-KVLNLRGNFLE-DLPDRLFAPLSHLEELDLGQNRIS-RIDQACF 251
           +S     ++     L   + +  N L   +P        +L  +DL +N +        F
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN--LNLAFVDLSRNMLEGDASVL-F 217

Query: 252 EGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFT 292
                 + ++L  N L +           L  L +  N   
Sbjct: 218 GSDKNTQKIHLAKNSL-AFDLGKVGLSKNLNGLDLRNNRIY 257

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 42.9 bits (102), Expect = 8e-05
 Identities = 24/114 (21%), Positives = 40/114 (35%), Gaps = 7/114 (6%)

Query: 184 KLVELQLNHNKLS-SVNNKTFIG-LKSLKVLNLRG-NFLE-DLPDRLFAPLSHLEELDLG 239
           ++  L L+   L       + +  L  L  L + G N L   +P  +   L+ L  L + 
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYIT 109

Query: 240 QNRISRIDQACFEGLTALRILYLDDNQLR-SVPTPSFIYLGMLAELRVGLNVFT 292
              +S         +  L  L    N L  ++P PS   L  L  +    N  +
Sbjct: 110 HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP-PSISSLPNLVGITFDGNRIS 162

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 49.7 bits (119), Expect = 5e-07
 Identities = 34/161 (21%), Positives = 57/161 (35%), Gaps = 30/161 (18%)

Query: 135 NPSIQRLVLKYNRI-----KTVDSAIQFY-SSLQHVDLSHNQLVNIPIRGF-----EPQE 183
             S+  L L  N +       +   +    +++  ++LS N L                 
Sbjct: 50  PASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPF 109

Query: 184 KLVELQLNHNKLSSVNNKTFIGL-----KSLKVLNLRGNFLED-----LPDRLFAPLSHL 233
            +  L L  N  SS ++  F         S+  LNLRGN L       L   L A  +++
Sbjct: 110 TITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANV 169

Query: 234 EELDLGQNRISRIDQACF---EGL----TALRILYLDDNQL 267
             L+L  N ++   + C    + L     ++  L L  N L
Sbjct: 170 NSLNLRGNNLA--SKNCAELAKFLASIPASVTSLDLSANLL 208

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 49.3 bits (118), Expect = 7e-07
 Identities = 30/163 (18%), Positives = 54/163 (33%), Gaps = 29/163 (17%)

Query: 135 NPSIQRLVLKYNRI-----KTVDSAIQ-FYSSLQHVDLSHNQLVNIPIRGF-----EPQE 183
             +I  L L +N            A     +S+  ++L  N L                 
Sbjct: 108 PFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPA 167

Query: 184 KLVELQLNHNKLSSVNNKTFIGL-----KSLKVLNLRGNFLED-----LPDRLFAPLSHL 233
            +  L L  N L+S N             S+  L+L  N L       L     +  +H+
Sbjct: 168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHV 227

Query: 234 EELDLGQNRISRIDQAC------FEGLTALRILYLDDNQLRSV 270
             L+L  N +     +        + L  L+ +YLD + ++++
Sbjct: 228 VSLNLCLNCLH--GPSLENLKLLKDSLKHLQTVYLDYDIVKNM 268

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 32/131 (24%), Positives = 47/131 (35%), Gaps = 24/131 (18%)

Query: 159 SSLQHVDLSHNQLVNIPIRGF-----EPQEKLVELQLNHNKLSSVNNKTFI-GLKS---- 208
             +  +DLS N L +I               +  L L+ N L   N+   +  L +    
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81

Query: 209 LKVLNLRGNFLED-----LPDRLFAPLSHLEELDLGQNRISRIDQAC---FEGL----TA 256
           +  LNL GNFL       L   L A    +  LDLG N  S   ++     +       +
Sbjct: 82  VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS--SKSSSEFKQAFSNLPAS 139

Query: 257 LRILYLDDNQL 267
           +  L L  N L
Sbjct: 140 ITSLNLRGNDL 150

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 21/134 (15%), Positives = 42/134 (31%), Gaps = 22/134 (16%)

Query: 133 TLNPSIQRLVLKYNRIKTV------DSAIQFYSSLQHVDLSHNQLVNIPIRGF-----EP 181
            +  ++  L L+ N + +              +S+  +DLS N L               
Sbjct: 164 AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSI 223

Query: 182 QEKLVELQLNHNKLSSVNNKTFIGL----KSLKVLNLRGNFLEDLPDRLFAPL------- 230
              +V L L  N L   + +    L    K L+ + L  + ++++       L       
Sbjct: 224 PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNI 283

Query: 231 SHLEELDLGQNRIS 244
             +  +D     I 
Sbjct: 284 QKIILVDKNGKEIH 297

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 42.1 bits (99), Expect = 3e-05
 Identities = 21/135 (15%), Positives = 32/135 (23%), Gaps = 37/135 (27%)

Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDL 166
           CP  C C      V C    L                      ++ +A         + L
Sbjct: 2   CPAPCSCAGTL--VDCGRRGL-------------------TWASLPTAF--PVDTTELVL 38

Query: 167 SHNQLVNIPIRGFEPQEKLVELQLNHNKL--------------SSVNNKTFIGLKSLKVL 212
           + N L  +P    +    L    L  N                       +  L+ +   
Sbjct: 39  TGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERAPYRDLRCVAPP 98

Query: 213 NLRGNFLEDLPDRLF 227
            LRG  L  L +   
Sbjct: 99  ALRGRLLPYLAEDEL 113

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 3/54 (5%)

Query: 215 RGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLR 268
           RG     LP           EL L  N ++ +     + L ALR  +L  N  R
Sbjct: 18  RGLTWASLPTAFP---VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 42.2 bits (98), Expect = 1e-04
 Identities = 18/102 (17%), Positives = 39/102 (38%), Gaps = 16/102 (15%)

Query: 159 SSLQHVDL---SHNQLVNIPIRGFEP------QEKLVELQLNHNKLSSVNNKTFIG---L 206
            +L+ + L     +   +  +  F P         L  L +   +  +V  + F+    L
Sbjct: 219 PNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDIL 278

Query: 207 KSLKVLNLRGNFLEDLPDRLFA----PLSHLEELDLGQNRIS 244
             L+ +++    L D   RL       + HL+ +++  N +S
Sbjct: 279 PQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	332
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	100.0
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	100.0
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	100.0
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.98
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.97
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.97
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.97
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.96
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.96
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.96
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.96
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.95
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.95
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.95
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.95
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.94
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.94
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.94
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.94
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.94
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.94
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.94
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.94
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.94
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.94
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.93
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.93
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.93
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.93
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.93
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.93
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.93
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.93
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.93
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.93
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.93
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.93
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.92
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.92
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.92
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.92
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.91
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.91
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.91
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.91
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.91
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.91
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.91
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.91
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.91
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.9
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.9
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.9
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.89
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.89
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.89
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.88
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.88
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.88
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.87
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.87
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.87
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.87
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.86
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.85
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.85
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.85
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.84
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.84
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.83
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.83
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.82
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.82
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.82
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.82
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.8
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.79
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.79
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.77
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.77
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.77
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.77
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.77
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.76
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.76
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.75
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.75
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.74
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.74
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.74
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.73
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.73
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.72
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.71
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.71
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.69
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.68
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.68
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.68
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.67
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.67
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.65
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.62
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.61
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.54
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.53
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.52
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.49
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.45
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.41
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.36
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.32
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.31
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.24
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.14
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.06
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.03
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.02
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.95
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.92
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.84
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.81
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	98.65
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.42
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.24
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.21
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.09
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.07
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.83
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.21
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.55
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.5
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	88.63
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	85.17

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=100.00  E-value=1.2e-33  Score=251.30  Aligned_cols=227  Identities=30%  Similarity=0.444  Sum_probs=214.4

Q ss_pred             CCCCCCcccCCC-ceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCCC
Q psy8550         106 FCPPDCDCNDET-LVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQE  183 (332)
Q Consensus       106 ~~p~~c~c~~~~-~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~  183 (332)
                      .||..|.|.... ..++|.+..++.+|.++++++++|++++|.++.+++ .+..+++|++|++++|.++.+.+..|..++
T Consensus         1 ~CP~~C~C~~~~~~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~   80 (285)
T 1ozn_A            1 PCPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA   80 (285)
T ss_dssp             CCCTTCEEECSSSCEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             CcCCCceECCCCCeEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCcc
Confidence            499999998654 689999999999999999999999999999998886 789999999999999999999889999999


Q ss_pred             CCcEEEcCCCc-ccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeC
Q psy8550         184 KLVELQLNHNK-LSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYL  262 (332)
Q Consensus       184 ~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  262 (332)
                      +|++|++++|. +..+.+..|.++++|++|++++|.++.+++..+..+++|++|++++|.++.+++..++.+++|+.|++
T Consensus        81 ~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  160 (285)
T 1ozn_A           81 LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL  160 (285)
T ss_dssp             TCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEEC
Confidence            99999999997 99998999999999999999999999998888899999999999999999998888999999999999


Q ss_pred             CCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCcccC
Q psy8550         263 DDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHWI  332 (332)
Q Consensus       263 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~l  332 (332)
                      ++|.++++++..+..+++|+.|++++|.+++..+..+.++++|+.|++++|+++++++..|+.++.|+.|
T Consensus       161 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  230 (285)
T 1ozn_A          161 HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL  230 (285)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEE
T ss_pred             CCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEE
Confidence            9999999998889999999999999999999999899999999999999999999999999999888753

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=100.00  E-value=1.1e-31  Score=254.00  Aligned_cols=229  Identities=27%  Similarity=0.419  Sum_probs=177.7

Q ss_pred             CCCCCCCCCcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCC
Q psy8550         103 ASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEP  181 (332)
Q Consensus       103 ~~~~~p~~c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~  181 (332)
                      ....||..|.|......+.|.+..++.+|.+++++++.|++++|.++.+++ .+.++++|++|++++|.+..+++..|.+
T Consensus        42 ~~~~Cp~~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~  121 (452)
T 3zyi_A           42 GPQNCPSVCSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNG  121 (452)
T ss_dssp             --CCCCTTSEECSSSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             CcCCCCCCCEECCCCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccC
Confidence            356799999998877789999999999999999999999999999998755 8999999999999999999999999999


Q ss_pred             CCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccC-CCCcccChhhcCCCC-----
Q psy8550         182 QEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQ-NRISRIDQACFEGLT-----  255 (332)
Q Consensus       182 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-----  255 (332)
                      +++|++|++++|.++.+++..|.++++|++|++++|.++.+++..|..+++|+.|++++ +.+..+++..|..++     
T Consensus       122 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L  201 (452)
T 3zyi_A          122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL  201 (452)
T ss_dssp             CTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEE
T ss_pred             cccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEE
Confidence            99999999999999999888899999999999999999888776666666666666655 344444444444444     


Q ss_pred             -----------------CCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCc
Q psy8550         256 -----------------ALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNM  318 (332)
Q Consensus       256 -----------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l  318 (332)
                                       +|+.|++++|.++++++..|..+++|+.|++++|+++++.+.+|.++++|+.|+|++|+++++
T Consensus       202 ~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  281 (452)
T 3zyi_A          202 NLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL  281 (452)
T ss_dssp             ECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             ECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCcc
Confidence                             555555555555555555666666666666666666666666666666777777777777777


Q ss_pred             ccccccCCCCccc
Q psy8550         319 MGHSMALGDYLHW  331 (332)
Q Consensus       319 ~~~~~~~l~~L~~  331 (332)
                      ++..|..++.|+.
T Consensus       282 ~~~~~~~l~~L~~  294 (452)
T 3zyi_A          282 PHDLFTPLRYLVE  294 (452)
T ss_dssp             CTTSSTTCTTCCE
T ss_pred             ChHHhccccCCCE
Confidence            7666666666653

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=100.00  E-value=8.4e-32  Score=253.89  Aligned_cols=230  Identities=29%  Similarity=0.440  Sum_probs=174.9

Q ss_pred             cCCCCCCCCCcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCC
Q psy8550         102 QASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFE  180 (332)
Q Consensus       102 ~~~~~~p~~c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~  180 (332)
                      .....||..|.|......+.|.+..++.+|.+++++++.|++++|.++.++. .+.++++|++|++++|.+..+++..|.
T Consensus        30 ~~~~~Cp~~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~  109 (440)
T 3zyj_A           30 GSAQTCPSVCSCSNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFN  109 (440)
T ss_dssp             ---CCCCSSSEECTTSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGT
T ss_pred             cccccCCCCCEeCCCCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhcc
Confidence            3456799999999877789999999999999999999999999999998775 889999999999999999999888899


Q ss_pred             CCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccC-CCCcccChhhcCCC-----
Q psy8550         181 PQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQ-NRISRIDQACFEGL-----  254 (332)
Q Consensus       181 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l-----  254 (332)
                      ++++|++|++++|+++.+++..|.++++|++|++++|.++.+++..|..+++|+.|++++ +.+..+++..|.++     
T Consensus       110 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~  189 (440)
T 3zyj_A          110 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY  189 (440)
T ss_dssp             TCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCE
T ss_pred             CCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCe
Confidence            999999999999999988888888899999999999888877766566666666666655 34444444444444     


Q ss_pred             -----------------CCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCC
Q psy8550         255 -----------------TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN  317 (332)
Q Consensus       255 -----------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  317 (332)
                                       ++|+.|++++|.++++++..|..+++|+.|++++|+++++.+.+|.++++|+.|+|++|++++
T Consensus       190 L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  269 (440)
T 3zyj_A          190 LNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL  269 (440)
T ss_dssp             EECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCC
T ss_pred             ecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCc
Confidence                             455555555555555555566666666666666666666666666667777777777777777


Q ss_pred             cccccccCCCCccc
Q psy8550         318 MMGHSMALGDYLHW  331 (332)
Q Consensus       318 l~~~~~~~l~~L~~  331 (332)
                      +++..|..++.|+.
T Consensus       270 ~~~~~~~~l~~L~~  283 (440)
T 3zyj_A          270 LPHDLFTPLHHLER  283 (440)
T ss_dssp             CCTTTTSSCTTCCE
T ss_pred             cChhHhccccCCCE
Confidence            77777766666654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.98  E-value=7.2e-32  Score=233.78  Aligned_cols=220  Identities=25%  Similarity=0.381  Sum_probs=203.2

Q ss_pred             CCCCCCCcccC-CCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCc-CcccCCCCCCC
Q psy8550         105 AFCPPDCDCND-ETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQ-LVNIPIRGFEP  181 (332)
Q Consensus       105 ~~~p~~c~c~~-~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~-l~~~~~~~~~~  181 (332)
                      +.||..|.|.. ....++|.+  ++.+|. +++++++|++++|.++.+++ .+.++++|++|++++|. ++.+++..|..
T Consensus         2 ~~cp~~C~C~~~~~~~v~c~~--l~~ip~-~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~   78 (239)
T 2xwt_C            2 GCSSPPCECHQEEDFRVTCKD--IQRIPS-LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYN   78 (239)
T ss_dssp             -CCSSSCSEEECSTTEEEECS--CSSCCC-CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEES
T ss_pred             CCCCCCCeeCCCCcceeEccC--ccccCC-CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCC
Confidence            35999999987 666788987  889998 99999999999999999988 89999999999999997 99999889999


Q ss_pred             CCCCcEEEcCC-CcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCc---EeeccCC-CCcccChhhcCCCCC
Q psy8550         182 QEKLVELQLNH-NKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLE---ELDLGQN-RISRIDQACFEGLTA  256 (332)
Q Consensus       182 l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~~l~~  256 (332)
                      +++|++|++++ |.++.+++..|.++++|++|++++|.++.+|.  +..+++|+   .|++++| .++.+++..|..+++
T Consensus        79 l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~  156 (239)
T 2xwt_C           79 LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCN  156 (239)
T ss_dssp             CTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBS
T ss_pred             CcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc--cccccccccccEEECCCCcchhhcCcccccchhc
Confidence            99999999998 99999988999999999999999999999887  78888888   9999999 999999888999999


Q ss_pred             Cc-EEeCCCCCCCCcCcccccCCCCccEEEcCCCc-CCccCchhcCCC-CCCCEEEccCCCCCCcccccccCCCCcc
Q psy8550         257 LR-ILYLDDNQLRSVPTPSFIYLGMLAELRVGLNV-FTTLADGAFNGL-GRLSALDLRGAGLTNMMGHSMALGDYLH  330 (332)
Q Consensus       257 L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l-~~L~~L~Ls~n~l~~l~~~~~~~l~~L~  330 (332)
                      |+ .|++++|.++.+++..+.. ++|+.|++++|+ ++++++..|.++ ++|+.|++++|+++++++..|..++.|+
T Consensus       157 L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~  232 (239)
T 2xwt_C          157 ETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELI  232 (239)
T ss_dssp             SEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEE
T ss_pred             ceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCceee
Confidence            99 9999999999999877766 899999999995 999999999999 9999999999999999999888777664

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.97  E-value=2.2e-30  Score=228.54  Aligned_cols=211  Identities=30%  Similarity=0.477  Sum_probs=199.8

Q ss_pred             CCCCcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCCCCCc
Q psy8550         108 PPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLV  186 (332)
Q Consensus       108 p~~c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~  186 (332)
                      +..|.|......++|.++.++.+|..+++++++|++++|.++.+++ .+.++++|++|++++|.++.+++..|..+++|+
T Consensus         9 ~~~C~c~~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~   88 (270)
T 2o6q_A            9 GGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLE   88 (270)
T ss_dssp             TCSBEEETTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCC
T ss_pred             CCCCEeCCCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCC
Confidence            4568998877899999999999999999999999999999998887 799999999999999999999988899999999


Q ss_pred             EEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCC
Q psy8550         187 ELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQ  266 (332)
Q Consensus       187 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  266 (332)
                      +|++++|.++.+++..|.++++|++|++++|.++.+++..|+.+++|++|++++|.++.+++..+..+++|+.|++++|.
T Consensus        89 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  168 (270)
T 2o6q_A           89 TLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ  168 (270)
T ss_dssp             EEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc
Confidence            99999999999988899999999999999999999999889999999999999999999988889999999999999999


Q ss_pred             CCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCc
Q psy8550         267 LRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNM  318 (332)
Q Consensus       267 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l  318 (332)
                      ++++++..|..+++|+.|++++|+++++++..+..+++|+.|++++|.+..-
T Consensus       169 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          169 LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred             CcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence            9999998899999999999999999999998899999999999999998654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.97  E-value=1.3e-30  Score=248.03  Aligned_cols=226  Identities=28%  Similarity=0.436  Sum_probs=200.1

Q ss_pred             CCCCCCcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCCCC
Q psy8550         106 FCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEK  184 (332)
Q Consensus       106 ~~p~~c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~  184 (332)
                      .||..|.|......+.|.+..++.+|.+++++++.|++++|.++.+++ .+.++++|++|++++|.+..+.+..|.++++
T Consensus         2 ~Cp~~C~C~~~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~   81 (477)
T 2id5_A            2 GCPPRCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFN   81 (477)
T ss_dssp             CCSTTCEEETTTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             cccCCCeECCCCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCcc
Confidence            599999999877789999999999999999999999999999998865 8999999999999999999998899999999


Q ss_pred             CcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCC
Q psy8550         185 LVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDD  264 (332)
Q Consensus       185 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  264 (332)
                      |++|++++|.++.+++..|.++++|++|++++|.++.+++..|..+++|+.|++++|.++.+.+..|..+++|+.|++++
T Consensus        82 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  161 (477)
T 2id5_A           82 LRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK  161 (477)
T ss_dssp             CCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEES
T ss_pred             CCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCC
Confidence            99999999999999888899999999999999999999888889999999999999999998888899999999999999


Q ss_pred             CCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCC------------------------CEEEccCCCCCCccc
Q psy8550         265 NQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRL------------------------SALDLRGAGLTNMMG  320 (332)
Q Consensus       265 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L------------------------~~L~Ls~n~l~~l~~  320 (332)
                      |.++++++..+..+++|+.|++++|.+.++++..|..+++|                        +.|++++|+++.+++
T Consensus       162 n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  241 (477)
T 2id5_A          162 CNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPY  241 (477)
T ss_dssp             CCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCH
T ss_pred             CcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCH
Confidence            99999888778888888888888888888777666666554                        455555667777777


Q ss_pred             ccccCCCCccc
Q psy8550         321 HSMALGDYLHW  331 (332)
Q Consensus       321 ~~~~~l~~L~~  331 (332)
                      ..|+.++.|+.
T Consensus       242 ~~~~~l~~L~~  252 (477)
T 2id5_A          242 LAVRHLVYLRF  252 (477)
T ss_dssp             HHHTTCTTCCE
T ss_pred             HHhcCccccCe
Confidence            77777777664

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.97  E-value=1.4e-30  Score=233.80  Aligned_cols=223  Identities=24%  Similarity=0.373  Sum_probs=158.4

Q ss_pred             CCCCCcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccC--CCC-----
Q psy8550         107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIP--IRG-----  178 (332)
Q Consensus       107 ~p~~c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~--~~~-----  178 (332)
                      ||..|.|...  .++|.+..++.+|.++++++++|++++|.++.+|. .+.++++|++|++++|.+..+.  +..     
T Consensus         1 CP~~C~C~~~--~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~   78 (306)
T 2z66_A            1 CPSRCSCSGT--EIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT   78 (306)
T ss_dssp             CCTTCEEETT--EEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCS
T ss_pred             CcCCCeeCCC--EEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccccccc
Confidence            8999999754  79999999999999999999999999999998887 4788999999999998877442  122     


Q ss_pred             ------------------CCCCCCCcEEEcCCCcccccCc-cccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeecc
Q psy8550         179 ------------------FEPQEKLVELQLNHNKLSSVNN-KTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLG  239 (332)
Q Consensus       179 ------------------~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  239 (332)
                                        +..+++|++|++++|.++++.+ ..+.++++|++|++++|.+...++..+..+++|++|+++
T Consensus        79 ~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  158 (306)
T 2z66_A           79 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA  158 (306)
T ss_dssp             CCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECT
T ss_pred             ccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECC
Confidence                              3445555555555555555543 455566666666666666665555555666666666666


Q ss_pred             CCCCcc-cChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCc
Q psy8550         240 QNRISR-IDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNM  318 (332)
Q Consensus       240 ~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l  318 (332)
                      +|.+++ ..+..+..+++|+.|++++|.++++++..++.+++|+.|++++|.++++++..+..+++|+.||+++|++++.
T Consensus       159 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  238 (306)
T 2z66_A          159 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS  238 (306)
T ss_dssp             TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred             CCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence            666654 3345566667777777777777776666667777777777777777777666677777777777777777777


Q ss_pred             ccccccCCC-Cccc
Q psy8550         319 MGHSMALGD-YLHW  331 (332)
Q Consensus       319 ~~~~~~~l~-~L~~  331 (332)
                      ++..+..++ .|+.
T Consensus       239 ~~~~~~~~~~~L~~  252 (306)
T 2z66_A          239 KKQELQHFPSSLAF  252 (306)
T ss_dssp             SSSSCCCCCTTCCE
T ss_pred             CHHHHHhhhccCCE
Confidence            776666653 5543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.97  E-value=4.1e-30  Score=227.43  Aligned_cols=222  Identities=27%  Similarity=0.329  Sum_probs=201.4

Q ss_pred             CCcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEE
Q psy8550         110 DCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVEL  188 (332)
Q Consensus       110 ~c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L  188 (332)
                      .|.|......+.|.+..+..+|..+++++++|++++|.++.++. .+.++++|++|++++|.+..+++..|..+++|++|
T Consensus         2 ~C~~~~~~~~~~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   81 (276)
T 2z62_A            2 PCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL   81 (276)
T ss_dssp             CSEEEETTTEEECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             CceeccCCceEEecCCCccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEE
Confidence            46776666689999999999999999999999999999998887 89999999999999999999998899999999999


Q ss_pred             EcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccC-hhhcCCCCCCcEEeCCCCCC
Q psy8550         189 QLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID-QACFEGLTALRILYLDDNQL  267 (332)
Q Consensus       189 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l  267 (332)
                      ++++|.++++.+..|.++++|++|++++|.++.+++..++.+++|++|++++|.++.+. +..+..+++|++|++++|.+
T Consensus        82 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l  161 (276)
T 2z62_A           82 ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI  161 (276)
T ss_dssp             ECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred             ECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCC
Confidence            99999999998899999999999999999999999877899999999999999999864 77899999999999999999


Q ss_pred             CCcCcccccCCCCcc----EEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCcccC
Q psy8550         268 RSVPTPSFIYLGMLA----ELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHWI  332 (332)
Q Consensus       268 ~~~~~~~~~~l~~L~----~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~l  332 (332)
                      +++++..+..+.+++    .|++++|+++++++..+.. .+|+.|++++|+++++++..|+.++.|+.|
T Consensus       162 ~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  229 (276)
T 2z62_A          162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKI  229 (276)
T ss_dssp             CEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEE
T ss_pred             CcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEE
Confidence            999887787777766    8999999999988866654 489999999999999999888888888653

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=2e-29  Score=230.82  Aligned_cols=230  Identities=25%  Similarity=0.334  Sum_probs=189.4

Q ss_pred             cCCCCCCCCCcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCC
Q psy8550         102 QASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFE  180 (332)
Q Consensus       102 ~~~~~~p~~c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~  180 (332)
                      .....|+..|.|.... .++|.++.++.+|.++++++++|++++|.++.++. .+.++++|++|++++|.++.+.+..|.
T Consensus        19 ~~~~~~~~~~~C~~~~-~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~   97 (353)
T 2z80_A           19 KEESSNQASLSCDRNG-ICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFS   97 (353)
T ss_dssp             --------CCEECTTS-EEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred             CccCCCccCCCCCCCe-EeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcC
Confidence            4444578888887654 58999999999999999999999999999999888 899999999999999999999988999


Q ss_pred             CCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCc-cccCCCCCCcEeeccCC-CCcccChhhcCCCCCCc
Q psy8550         181 PQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPD-RLFAPLSHLEELDLGQN-RISRIDQACFEGLTALR  258 (332)
Q Consensus       181 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~  258 (332)
                      .+++|++|++++|.++++++..|.++++|++|++++|.++.++. ..+..+++|++|++++| .+..+.+..+..+++|+
T Consensus        98 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~  177 (353)
T 2z80_A           98 SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLE  177 (353)
T ss_dssp             TCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE
T ss_pred             CCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCC
Confidence            99999999999999999988789999999999999999999988 67889999999999998 58888788888889999


Q ss_pred             EEeCCCCCCCCcCcccccCCCCccEEEcCCCc------------------------CCccC-------------------
Q psy8550         259 ILYLDDNQLRSVPTPSFIYLGMLAELRVGLNV------------------------FTTLA-------------------  295 (332)
Q Consensus       259 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~------------------------l~~~~-------------------  295 (332)
                      +|++++|.+.++.+..++.+++|++|++++|.                        +++..                   
T Consensus       178 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~  257 (353)
T 2z80_A          178 ELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFR  257 (353)
T ss_dssp             EEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEE
T ss_pred             EEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccc
Confidence            99999998888866666665555555555554                        44322                   


Q ss_pred             ------------chhcCCCCCCCEEEccCCCCCCcccccccCCCCcccC
Q psy8550         296 ------------DGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHWI  332 (332)
Q Consensus       296 ------------~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~l  332 (332)
                                  |.++.++++|+.|++++|+++++++..|+.++.|+.|
T Consensus       258 ~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L  306 (353)
T 2z80_A          258 NVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKI  306 (353)
T ss_dssp             SCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEE
Confidence                        2245677889999999999999888888888887653

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.96  E-value=6.5e-29  Score=234.71  Aligned_cols=275  Identities=23%  Similarity=0.273  Sum_probs=183.0

Q ss_pred             CCCCCCCCC--CccCCchhhHhhhhcc-chhhhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy8550          35 HPGFQNNPK--SNFKSPTEILKSLLII-PFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDC  111 (332)
Q Consensus        35 ~~g~~~~p~--~~~~~~~~~~~~l~~i-P~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~c  111 (332)
                      +.+.+.+|.  ..++.+++....+..+ |..++++.+|+.|+++++......+                       +...
T Consensus        19 ~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~-----------------------~~~~   75 (455)
T 3v47_A           19 NRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIR-----------------------NNTF   75 (455)
T ss_dssp             SSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEEC-----------------------TTTT
T ss_pred             CCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceEC-----------------------cccc
Confidence            445555553  2245555555555555 6668888888888888776543211                       1111


Q ss_pred             cccCCCceEEecCCCcccc-CCCCC--CCccEEEeecCCCcc-chhh--hcCCCCCcEEEeecCcCcccCCCC-CCCCCC
Q psy8550         112 DCNDETLVVTCKEANLDVI-PITLN--PSIQRLVLKYNRIKT-VDSA--IQFYSSLQHVDLSHNQLVNIPIRG-FEPQEK  184 (332)
Q Consensus       112 ~c~~~~~~~~c~~~~l~~l-p~~~~--~~L~~L~l~~~~l~~-l~~~--~~~l~~L~~L~l~~~~l~~~~~~~-~~~l~~  184 (332)
                      .....++.++..++.+..+ |..+.  ++|++|++++|.++. ++..  +..+++|++|++++|.+..+.+.. +..+++
T Consensus        76 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~  155 (455)
T 3v47_A           76 RGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR  155 (455)
T ss_dssp             TTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTT
T ss_pred             cccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCc
Confidence            2223344555555555544 32332  455555555555553 2222  555555555555555555554333 455555


Q ss_pred             CcEEEcCCCcccccCccccCCC----------------------------------------------------------
Q psy8550         185 LVELQLNHNKLSSVNNKTFIGL----------------------------------------------------------  206 (332)
Q Consensus       185 L~~L~l~~n~l~~~~~~~~~~l----------------------------------------------------------  206 (332)
                      |++|++++|.++++.+..+..+                                                          
T Consensus       156 L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~  235 (455)
T 3v47_A          156 FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA  235 (455)
T ss_dssp             CCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHH
T ss_pred             ccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcc
Confidence            5555555555554444333221                                                          


Q ss_pred             ---------------------------------------CCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccC
Q psy8550         207 ---------------------------------------KSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID  247 (332)
Q Consensus       207 ---------------------------------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  247 (332)
                                                             ++|++|++++|.++..++..++.+++|+.|++++|.++.+.
T Consensus       236 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  315 (455)
T 3v47_A          236 IAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID  315 (455)
T ss_dssp             TTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC
T ss_pred             ccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccC
Confidence                                                   35666666666666666666788889999999999999888


Q ss_pred             hhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCC
Q psy8550         248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGD  327 (332)
Q Consensus       248 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~  327 (332)
                      +..+..+++|+.|++++|.++++++..++.+++|+.|++++|+++++.+.+|.++++|++|++++|+++++++..|+.++
T Consensus       316 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  395 (455)
T 3v47_A          316 DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLT  395 (455)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred             hhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCC
Confidence            88888899999999999999988888888899999999999999998888899999999999999999999988888888


Q ss_pred             CcccC
Q psy8550         328 YLHWI  332 (332)
Q Consensus       328 ~L~~l  332 (332)
                      .|+.|
T Consensus       396 ~L~~L  400 (455)
T 3v47_A          396 SLQKI  400 (455)
T ss_dssp             TCCEE
T ss_pred             cccEE
Confidence            88753

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.96  E-value=5.9e-29  Score=236.61  Aligned_cols=273  Identities=20%  Similarity=0.234  Sum_probs=208.1

Q ss_pred             CCCCCCCCCC---ccCCchhhHhhhhcc-chhhhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCCC
Q psy8550          35 HPGFQNNPKS---NFKSPTEILKSLLII-PFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPD  110 (332)
Q Consensus        35 ~~g~~~~p~~---~~~~~~~~~~~l~~i-P~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  110 (332)
                      ..++..+|..   .+..+++....+..+ |..++++.+|+.|++++|.+....+                        ..
T Consensus        20 ~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~------------------------~~   75 (477)
T 2id5_A           20 RKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEP------------------------GA   75 (477)
T ss_dssp             SCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT------------------------TT
T ss_pred             CCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeCh------------------------hh
Confidence            3455556643   335555555666666 4579999999999999887776532                        11


Q ss_pred             CcccCCCceEEecCCCccccCCCCC---CCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCCCCCc
Q psy8550         111 CDCNDETLVVTCKEANLDVIPITLN---PSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLV  186 (332)
Q Consensus       111 c~c~~~~~~~~c~~~~l~~lp~~~~---~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~  186 (332)
                      ......++.++..++.+..+|....   ++|++|++++|.++.+++ .+..+++|++|++++|.+..+.+..|..+++|+
T Consensus        76 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  155 (477)
T 2id5_A           76 FNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLE  155 (477)
T ss_dssp             TTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCC
T ss_pred             hhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCC
Confidence            1223345677777777777776432   677888888888776544 677778888888888888777777777778888


Q ss_pred             EEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCC------------------------CCcEeeccCCC
Q psy8550         187 ELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLS------------------------HLEELDLGQNR  242 (332)
Q Consensus       187 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------------------------~L~~L~L~~n~  242 (332)
                      +|++++|.++++++..|.++++|+.|++++|.+..+++..|..++                        +|+.|++++|.
T Consensus       156 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~  235 (477)
T 2id5_A          156 QLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN  235 (477)
T ss_dssp             EEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC
T ss_pred             EEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc
Confidence            888888777777766777777777777777777666655454444                        55566666677


Q ss_pred             CcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCccccc
Q psy8550         243 ISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHS  322 (332)
Q Consensus       243 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~  322 (332)
                      ++.+++..+..+++|+.|++++|.++++++..|..+++|+.|++++|+++++.+.+|.++++|+.|++++|+++++++..
T Consensus       236 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  315 (477)
T 2id5_A          236 LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESV  315 (477)
T ss_dssp             CCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGG
T ss_pred             ccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhH
Confidence            88787778899999999999999999999888999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCccc
Q psy8550         323 MALGDYLHW  331 (332)
Q Consensus       323 ~~~l~~L~~  331 (332)
                      |..++.|+.
T Consensus       316 ~~~l~~L~~  324 (477)
T 2id5_A          316 FHSVGNLET  324 (477)
T ss_dssp             BSCGGGCCE
T ss_pred             cCCCcccCE
Confidence            988887764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=2.7e-28  Score=221.27  Aligned_cols=219  Identities=26%  Similarity=0.443  Sum_probs=160.0

Q ss_pred             CCCCCCCCcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCC
Q psy8550         104 SAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQ  182 (332)
Q Consensus       104 ~~~~p~~c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l  182 (332)
                      ...||..|.|.  ++.++|.+..++.+|..+++.++.|++++|.++.+++ .+.++++|++|++++|.++.+.+..|+.+
T Consensus        22 ~~~cp~~c~c~--l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l   99 (330)
T 1xku_A           22 GPVCPFRCQCH--LRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL   99 (330)
T ss_dssp             CCCCCTTCEEE--TTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTC
T ss_pred             cCCCCCCCcCC--CeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCC
Confidence            35699999986  4579999999999999999999999999999998887 89999999999999999999988999999


Q ss_pred             CCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcc--cChhhcCCCCCCcEE
Q psy8550         183 EKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISR--IDQACFEGLTALRIL  260 (332)
Q Consensus       183 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L  260 (332)
                      ++|++|++++|.++.++...+   ++|++|++++|.++.+++..+..+++|+.|++++|.+..  +.+..+..+++|+.|
T Consensus       100 ~~L~~L~Ls~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L  176 (330)
T 1xku_A          100 VKLERLYLSKNQLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI  176 (330)
T ss_dssp             TTCCEEECCSSCCSBCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEE
T ss_pred             CCCCEEECCCCcCCccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEE
Confidence            999999999999988754332   678888888888888887777778888888888887753  445556666666666


Q ss_pred             eCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCcc
Q psy8550         261 YLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLH  330 (332)
Q Consensus       261 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~  330 (332)
                      ++++|.++.++...+   ++|+.|++++|.+++..+..+.++++|+.|++++|+++++++..|..++.|+
T Consensus       177 ~l~~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  243 (330)
T 1xku_A          177 RIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR  243 (330)
T ss_dssp             ECCSSCCCSCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCC
T ss_pred             ECCCCccccCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCC
Confidence            666666655543211   3444444444444444444444444444444444444444444444444443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=2.6e-28  Score=221.56  Aligned_cols=216  Identities=25%  Similarity=0.401  Sum_probs=153.1

Q ss_pred             CCCCCCCCcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCC
Q psy8550         104 SAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQ  182 (332)
Q Consensus       104 ~~~~p~~c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l  182 (332)
                      ...||..|.|.  ++.++|.++.++.+|..++++++.|++++|.++.+++ .+.++++|++|++++|.++.+.+..|+.+
T Consensus        24 ~~~cp~~c~c~--l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  101 (332)
T 2ft3_A           24 SAMCPFGCHCH--LRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPL  101 (332)
T ss_dssp             -CCCCSSCEEE--TTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTC
T ss_pred             cCCCCCCCccc--CCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCc
Confidence            35699999886  4579999999999999999999999999999998865 89999999999999999999988899999


Q ss_pred             CCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCc------------------
Q psy8550         183 EKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRIS------------------  244 (332)
Q Consensus       183 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~------------------  244 (332)
                      ++|++|++++|.++.+++..+   ++|++|++++|.++.+++..+..+++|+.|++++|.++                  
T Consensus       102 ~~L~~L~L~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~  178 (332)
T 2ft3_A          102 RKLQKLYISKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLR  178 (332)
T ss_dssp             TTCCEEECCSSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCB
T ss_pred             CCCCEEECCCCcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEE
Confidence            999999999998887754332   56666666666666666655566666666666555553                  


Q ss_pred             ----------------------------ccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCc
Q psy8550         245 ----------------------------RIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD  296 (332)
Q Consensus       245 ----------------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  296 (332)
                                                  .+.+..+..+++|+.|++++|.++++++..++.+++|+.|++++|+++.+++
T Consensus       179 l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~  258 (332)
T 2ft3_A          179 ISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPA  258 (332)
T ss_dssp             CCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCT
T ss_pred             CcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecCh
Confidence                                        3333344445555555555555555555555555566666666666554433


Q ss_pred             hhcCCCCCCCEEEccCCCCCCcccccccC
Q psy8550         297 GAFNGLGRLSALDLRGAGLTNMMGHSMAL  325 (332)
Q Consensus       297 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~  325 (332)
                       .+..+++|+.|++++|+++++++..|..
T Consensus       259 -~l~~l~~L~~L~l~~N~l~~~~~~~~~~  286 (332)
T 2ft3_A          259 -GLPDLKLLQVVYLHTNNITKVGVNDFCP  286 (332)
T ss_dssp             -TGGGCTTCCEEECCSSCCCBCCTTSSSC
T ss_pred             -hhhcCccCCEEECCCCCCCccChhHccc
Confidence             3555566666666666666665555543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.96  E-value=1.5e-28  Score=224.99  Aligned_cols=223  Identities=23%  Similarity=0.354  Sum_probs=197.0

Q ss_pred             CCCCC-CcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCc-ccCCCCCCCC
Q psy8550         106 FCPPD-CDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLV-NIPIRGFEPQ  182 (332)
Q Consensus       106 ~~p~~-c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~-~~~~~~~~~l  182 (332)
                      .||.. |.|...  .+.|.++.++++|.++++++++|++++|+|+.+|+ +|.++++|++|++++|++. .+++.+|.++
T Consensus         1 gCp~~~C~C~~~--~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L   78 (350)
T 4ay9_X            1 GCHHRICHCSNR--VFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNL   78 (350)
T ss_dssp             -CCCSSSEEETT--EEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSC
T ss_pred             CCCCCccEeeCC--EEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcc
Confidence            38865 999754  79999999999999999999999999999999998 7899999999999999975 4777889999


Q ss_pred             CCCcE-EEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccC-CCCcccChhhcCCCC-CCcE
Q psy8550         183 EKLVE-LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQ-NRISRIDQACFEGLT-ALRI  259 (332)
Q Consensus       183 ~~L~~-L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~  259 (332)
                      ++++. +.+++|+++.++|.+|.++++|++|++++|.++.+++..+....++..+++.+ +.+..+++..|..+. .++.
T Consensus        79 ~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~  158 (350)
T 4ay9_X           79 PKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVI  158 (350)
T ss_dssp             TTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEE
T ss_pred             hhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhh
Confidence            98776 56678999999999999999999999999999999987777777888899865 688888887787765 6889


Q ss_pred             EeCCCCCCCCcCcccccCCCCccEEEcCC-CcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCccc
Q psy8550         260 LYLDDNQLRSVPTPSFIYLGMLAELRVGL-NVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHW  331 (332)
Q Consensus       260 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~  331 (332)
                      |++++|+++.+++..|. ..+++.+++++ |.++.+++++|.++++|++||+++|+|+++|+..|..++.|+.
T Consensus       159 L~L~~N~i~~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~  230 (350)
T 4ay9_X          159 LWLNKNGIQEIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA  230 (350)
T ss_dssp             EECCSSCCCEECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEEC
T ss_pred             hccccccccCCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhh
Confidence            99999999999986664 46899999974 7899999899999999999999999999999999998888764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=1.1e-27  Score=217.13  Aligned_cols=268  Identities=19%  Similarity=0.203  Sum_probs=227.5

Q ss_pred             CCCCCCCCC---ccCCchhhHhhhhccch-hhhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy8550          36 PGFQNNPKS---NFKSPTEILKSLLIIPF-EVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDC  111 (332)
Q Consensus        36 ~g~~~~p~~---~~~~~~~~~~~l~~iP~-~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~c  111 (332)
                      .++..+|..   .+..+++....+..+|. .++++.+|+.|++++|.+....+                        ...
T Consensus        41 ~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------------------------~~~   96 (330)
T 1xku_A           41 LGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP------------------------GAF   96 (330)
T ss_dssp             SCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCT------------------------TTT
T ss_pred             CCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCH------------------------HHh
Confidence            455556542   34556666666777776 69999999999999988776532                        222


Q ss_pred             cccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcc--cCCCCCCCCCCCcEE
Q psy8550         112 DCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVN--IPIRGFEPQEKLVEL  188 (332)
Q Consensus       112 ~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~--~~~~~~~~l~~L~~L  188 (332)
                      .....++.++..++.++.+|..+++++++|++++|.++.++. .+.++++|++|++++|.+..  +.+..+..+++|++|
T Consensus        97 ~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L  176 (330)
T 1xku_A           97 APLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI  176 (330)
T ss_dssp             TTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEE
T ss_pred             cCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEE
Confidence            334567789999999999999999999999999999998877 78999999999999999864  666789999999999


Q ss_pred             EcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCC
Q psy8550         189 QLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLR  268 (332)
Q Consensus       189 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  268 (332)
                      ++++|.++.++.. +.  ++|++|++++|.++.+++..+..+++|+.|++++|.++.+.+..+..+++|+.|++++|.++
T Consensus       177 ~l~~n~l~~l~~~-~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  253 (330)
T 1xku_A          177 RIADTNITTIPQG-LP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV  253 (330)
T ss_dssp             ECCSSCCCSCCSS-CC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS
T ss_pred             ECCCCccccCCcc-cc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc
Confidence            9999999988543 32  79999999999999998888899999999999999999998888999999999999999999


Q ss_pred             CcCcccccCCCCccEEEcCCCcCCccCchhcCC------CCCCCEEEccCCCCCC--cccccccCCCCccc
Q psy8550         269 SVPTPSFIYLGMLAELRVGLNVFTTLADGAFNG------LGRLSALDLRGAGLTN--MMGHSMALGDYLHW  331 (332)
Q Consensus       269 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~Ls~n~l~~--l~~~~~~~l~~L~~  331 (332)
                      .+|. .+..+++|++|++++|+++++++..|..      ...++.+++++|.+..  +++..|..+..|+.
T Consensus       254 ~lp~-~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~  323 (330)
T 1xku_A          254 KVPG-GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA  323 (330)
T ss_dssp             SCCT-TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGG
T ss_pred             cCCh-hhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeE
Confidence            8877 6888999999999999999998877754      3788999999999874  88889999888864

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.96  E-value=2.9e-28  Score=230.26  Aligned_cols=164  Identities=24%  Similarity=0.367  Sum_probs=125.3

Q ss_pred             CCCCCCCcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccc-hhhhcCCCCCcEEEeecCcCc-ccCCCCCCCC
Q psy8550         105 AFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLV-NIPIRGFEPQ  182 (332)
Q Consensus       105 ~~~p~~c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~l~-~~~~~~~~~l  182 (332)
                      .+||..|.|...  .+.|.+..++.+|. +++++++|++++|.++.+ |..++++++|++|++++|.+. .+++..|..+
T Consensus         2 ~p~~~~c~~~~~--~~~c~~~~l~~lp~-l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l   78 (455)
T 3v47_A            2 DPGTSECSVIGY--NAICINRGLHQVPE-LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGL   78 (455)
T ss_dssp             -----CCEEETT--EEECCSSCCSSCCC-CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTC
T ss_pred             CCccceeEEEcc--ccCcCCCCcccCCC-CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECccccccc
Confidence            358899999755  69999999999998 889999999999999977 458889999999999999876 5667788888


Q ss_pred             CCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCC--ccccCCCCCCcEeeccCCCCcccChhh-cCCCCCCcE
Q psy8550         183 EKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLP--DRLFAPLSHLEELDLGQNRISRIDQAC-FEGLTALRI  259 (332)
Q Consensus       183 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~  259 (332)
                      ++|++|++++|.++++.|..|+++++|++|++++|.+++..  ...++.+++|++|++++|.++.+.+.. +..+++|++
T Consensus        79 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~  158 (455)
T 3v47_A           79 SSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHV  158 (455)
T ss_dssp             TTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCE
T ss_pred             ccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccE
Confidence            89999999988888888888888888888888888877532  233667777777777777777665543 566666666


Q ss_pred             EeCCCCCCCCcC
Q psy8550         260 LYLDDNQLRSVP  271 (332)
Q Consensus       260 L~L~~n~l~~~~  271 (332)
                      |++++|.+.+++
T Consensus       159 L~L~~n~l~~~~  170 (455)
T 3v47_A          159 LDLTFNKVKSIC  170 (455)
T ss_dssp             EECTTCCBSCCC
T ss_pred             EeCCCCcccccC
Confidence            666666655443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.96  E-value=3e-28  Score=238.24  Aligned_cols=191  Identities=23%  Similarity=0.249  Sum_probs=164.6

Q ss_pred             CCCCCCcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCCCC
Q psy8550         106 FCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEK  184 (332)
Q Consensus       106 ~~p~~c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~  184 (332)
                      .|+..|.|......++|.+..++.+|.+++..+++|++++|.++.+++ .++++++|++|++++|.+..+.+.+|+++++
T Consensus         3 ~~~~~C~~~~~~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~   82 (606)
T 3t6q_A            3 SSDQKCIEKEVNKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHR   82 (606)
T ss_dssp             ---CCCEEEETTTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTT
T ss_pred             cccCceecccCCceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccc
Confidence            488999998777789999999999999999999999999999998855 8999999999999999999999899999999


Q ss_pred             CcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCC
Q psy8550         185 LVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDD  264 (332)
Q Consensus       185 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  264 (332)
                      |++|++++|.++++.|.+|+++++|++|++++|.++.+++..++.+++|++|++++|.++.+....+..+++|++|++++
T Consensus        83 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  162 (606)
T 3t6q_A           83 LDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN  162 (606)
T ss_dssp             CCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCS
T ss_pred             cCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEccc
Confidence            99999999999999999999999999999999999998777788899999999999999887544455688888888888


Q ss_pred             CCCCCcCcccccCCCCcc--EEEcCCCcCCccCc
Q psy8550         265 NQLRSVPTPSFIYLGMLA--ELRVGLNVFTTLAD  296 (332)
Q Consensus       265 n~l~~~~~~~~~~l~~L~--~L~L~~n~l~~~~~  296 (332)
                      |.++++++..++.+++|+  .|++++|.+++.++
T Consensus       163 n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~  196 (606)
T 3t6q_A          163 NAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEP  196 (606)
T ss_dssp             SCCCEECHHHHHTTTTCCSEEEECTTCCCCEECT
T ss_pred             CcccccChhhhhhhcccceeEEecCCCccCccCh
Confidence            888888776677777666  66666666655444

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.96  E-value=6.1e-28  Score=210.63  Aligned_cols=190  Identities=32%  Similarity=0.478  Sum_probs=176.5

Q ss_pred             CCCCCC--CcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCC
Q psy8550         105 AFCPPD--CDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEP  181 (332)
Q Consensus       105 ~~~p~~--c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~  181 (332)
                      ..||..  |.|......++|.++.++.+|..++++++.|++++|.++.+++ .+.++++|++|++++|.++.+++..|..
T Consensus         2 ~~Cp~~~gC~C~~~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~   81 (251)
T 3m19_A            2 KTCETVTGCTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD   81 (251)
T ss_dssp             --CHHHHSSEEEGGGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred             ccCCCCCceEcCCCCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhcc
Confidence            358876  9997777789999999999999999999999999999998776 7899999999999999999999888999


Q ss_pred             CCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEe
Q psy8550         182 QEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILY  261 (332)
Q Consensus       182 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  261 (332)
                      +++|++|++++|+++.+++..|.++++|++|++++|.++.+++..|..+++|+.|++++|.++.+++..++.+++|++|+
T Consensus        82 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  161 (251)
T 3m19_A           82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLS  161 (251)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEE
Confidence            99999999999999999888999999999999999999999998889999999999999999999888899999999999


Q ss_pred             CCCCCCCCcCcccccCCCCccEEEcCCCcCCcc
Q psy8550         262 LDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTL  294 (332)
Q Consensus       262 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  294 (332)
                      +++|.++++++..+..+++|+.|++++|+++..
T Consensus       162 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          162 LSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            999999999988899999999999999999876

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.96  E-value=2.3e-27  Score=209.26  Aligned_cols=194  Identities=30%  Similarity=0.424  Sum_probs=182.5

Q ss_pred             CccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccC
Q psy8550         137 SIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRG  216 (332)
Q Consensus       137 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~  216 (332)
                      +.+.++++++.++.+|..+.  +++++|++++|.+..+++..|..+++|++|++++|.++.+++..|.++++|++|++++
T Consensus        17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence            46789999999999987554  6899999999999999988999999999999999999999888899999999999999


Q ss_pred             CCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCc
Q psy8550         217 NFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD  296 (332)
Q Consensus       217 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  296 (332)
                      |.++.+++..|..+++|++|++++|.++.+++..|..+++|++|++++|.++++++..|+.+++|+.|++++|.++++++
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  174 (270)
T 2o6q_A           95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE  174 (270)
T ss_dssp             SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence            99999999888999999999999999999999889999999999999999999999889999999999999999999999


Q ss_pred             hhcCCCCCCCEEEccCCCCCCcccccccCCCCcccC
Q psy8550         297 GAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHWI  332 (332)
Q Consensus       297 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~l  332 (332)
                      ..|.++++|+.|++++|+++++++..|+.++.|+.|
T Consensus       175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  210 (270)
T 2o6q_A          175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML  210 (270)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEE
Confidence            889999999999999999999999999988888753

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.95  E-value=1e-27  Score=217.73  Aligned_cols=269  Identities=20%  Similarity=0.220  Sum_probs=227.5

Q ss_pred             CCCCCCCCCCc---cCCchhhHhhhhccc-hhhhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCCC
Q psy8550          35 HPGFQNNPKSN---FKSPTEILKSLLIIP-FEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPD  110 (332)
Q Consensus        35 ~~g~~~~p~~~---~~~~~~~~~~l~~iP-~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  110 (332)
                      ..++..+|...   ++.++.....+..+| ..++++.+|+.|++++|.+....+..                        
T Consensus        42 ~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~------------------------   97 (332)
T 2ft3_A           42 DLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKA------------------------   97 (332)
T ss_dssp             SSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG------------------------
T ss_pred             CCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhH------------------------
Confidence            44566666543   355555555566665 47999999999999998877663221                        


Q ss_pred             CcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcc--cCCCCCCCCCCCcE
Q psy8550         111 CDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVN--IPIRGFEPQEKLVE  187 (332)
Q Consensus       111 c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~--~~~~~~~~l~~L~~  187 (332)
                      ......++.++..++.+..+|..+++++++|++++|.++.+++ .+.++++|++|++++|.+..  +.+..+..+ +|++
T Consensus        98 ~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~  176 (332)
T 2ft3_A           98 FSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNY  176 (332)
T ss_dssp             STTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSC
T ss_pred             hhCcCCCCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCE
Confidence            1223456789999999999999998999999999999998887 68999999999999999964  667788888 9999


Q ss_pred             EEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCC
Q psy8550         188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQL  267 (332)
Q Consensus       188 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  267 (332)
                      |++++|.++.++. .+.  ++|++|++++|.++.+++..+..+++|+.|++++|.++.+.+..+..+++|+.|++++|.+
T Consensus       177 L~l~~n~l~~l~~-~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  253 (332)
T 2ft3_A          177 LRISEAKLTGIPK-DLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL  253 (332)
T ss_dssp             CBCCSSBCSSCCS-SSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCC
T ss_pred             EECcCCCCCccCc-ccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcC
Confidence            9999999999854 333  7899999999999999988889999999999999999999888899999999999999999


Q ss_pred             CCcCcccccCCCCccEEEcCCCcCCccCchhcCCC------CCCCEEEccCCCCC--CcccccccCCCCcccC
Q psy8550         268 RSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGL------GRLSALDLRGAGLT--NMMGHSMALGDYLHWI  332 (332)
Q Consensus       268 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l------~~L~~L~Ls~n~l~--~l~~~~~~~l~~L~~l  332 (332)
                      +.+|. .++.+++|+.|++++|+++++++..|...      ..++.|++++|.+.  ++++.+|..++.|+.+
T Consensus       254 ~~lp~-~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l  325 (332)
T 2ft3_A          254 SRVPA-GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAI  325 (332)
T ss_dssp             CBCCT-TGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTE
T ss_pred             eecCh-hhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhh
Confidence            98887 58899999999999999999988777653      67899999999998  8899999999888753

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.95  E-value=9.1e-30  Score=255.72  Aligned_cols=216  Identities=21%  Similarity=0.204  Sum_probs=137.2

Q ss_pred             CCceEEecCCCcc-ccCCCCC--CCccEEEeecCCCc-cchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcC
Q psy8550         116 ETLVVTCKEANLD-VIPITLN--PSIQRLVLKYNRIK-TVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLN  191 (332)
Q Consensus       116 ~~~~~~c~~~~l~-~lp~~~~--~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~  191 (332)
                      .++.++..++.+. .+|..+.  ++++.|++++|.++ .+|..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus       419 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~  498 (768)
T 3rgz_A          419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS  498 (768)
T ss_dssp             TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred             CCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEcc
Confidence            3444555555444 3333332  45666666666655 455566666666666666666665555566666666666666


Q ss_pred             CCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChh----------------------
Q psy8550         192 HNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQA----------------------  249 (332)
Q Consensus       192 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----------------------  249 (332)
                      +|++++..|.+++++++|++|++++|.+.+..+..++.+++|+.|++++|.+++..|.                      
T Consensus       499 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~  578 (768)
T 3rgz_A          499 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI  578 (768)
T ss_dssp             SSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEE
T ss_pred             CCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccc
Confidence            6666666666666666666666666666644444456666666666666655422221                      


Q ss_pred             ------------------------------------------------hcCCCCCCcEEeCCCCCCCCcCcccccCCCCc
Q psy8550         250 ------------------------------------------------CFEGLTALRILYLDDNQLRSVPTPSFIYLGML  281 (332)
Q Consensus       250 ------------------------------------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  281 (332)
                                                                      .++.+++|+.|++++|++++..|..++.+++|
T Consensus       579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L  658 (768)
T 3rgz_A          579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL  658 (768)
T ss_dssp             ECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTC
T ss_pred             ccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccC
Confidence                                                            12234556677777777776666677777777


Q ss_pred             cEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCccc
Q psy8550         282 AELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHW  331 (332)
Q Consensus       282 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~  331 (332)
                      +.|++++|++++.+|..++++++|+.|||++|++++..|..|+.++.|+.
T Consensus       659 ~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~  708 (768)
T 3rgz_A          659 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE  708 (768)
T ss_dssp             CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSE
T ss_pred             CEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCE
Confidence            77777777777777777777777777777777777777777777776654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.95  E-value=5.8e-27  Score=208.85  Aligned_cols=202  Identities=26%  Similarity=0.285  Sum_probs=185.4

Q ss_pred             cccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEc
Q psy8550         112 DCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQL  190 (332)
Q Consensus       112 ~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l  190 (332)
                      .+......++|.++.++.+|.+++++++.|++++|.++.+++ .+..+++|++|++++|.++.+++.  +.+++|++|++
T Consensus         7 ~~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~L   84 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDL   84 (290)
T ss_dssp             ECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEEC
T ss_pred             cccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEEC
Confidence            334567789999999999999999999999999999997765 899999999999999999998753  78999999999


Q ss_pred             CCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCc
Q psy8550         191 NHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSV  270 (332)
Q Consensus       191 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  270 (332)
                      ++|+++.+ |..+.++++|++|++++|.++.+++..|..+++|+.|++++|+++.+++..|..+++|+.|++++|+++++
T Consensus        85 s~N~l~~l-~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  163 (290)
T 1p9a_G           85 SHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL  163 (290)
T ss_dssp             CSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred             CCCcCCcC-chhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc
Confidence            99999987 56788999999999999999999998899999999999999999999988899999999999999999999


Q ss_pred             CcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCC
Q psy8550         271 PTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN  317 (332)
Q Consensus       271 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  317 (332)
                      ++..|..+++|+.|++++|+++.+++ .+....+|+.+++++|.+..
T Consensus       164 ~~~~~~~l~~L~~L~L~~N~l~~ip~-~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          164 PAGLLNGLENLDTLLLQENSLYTIPK-GFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCCCSEEECCSCCBCC
T ss_pred             CHHHhcCcCCCCEEECCCCcCCccCh-hhcccccCCeEEeCCCCccC
Confidence            99888999999999999999998776 45567899999999998865

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=7.1e-27  Score=220.19  Aligned_cols=199  Identities=30%  Similarity=0.463  Sum_probs=147.7

Q ss_pred             CceEEecCCCccccCCC-CC--CCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCC
Q psy8550         117 TLVVTCKEANLDVIPIT-LN--PSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNH  192 (332)
Q Consensus       117 ~~~~~c~~~~l~~lp~~-~~--~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~  192 (332)
                      .+.++..++.+..++.. +.  ++|++|++++|.++.++. .+.++++|++|++++|.++.+++..|..+++|++|++++
T Consensus        66 l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  145 (440)
T 3zyj_A           66 TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN  145 (440)
T ss_dssp             CSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCS
T ss_pred             CcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCC
Confidence            34556666666555432 21  455566666665555443 555555555555555555555555555555555555555


Q ss_pred             Cccccc-------------------------CccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccC
Q psy8550         193 NKLSSV-------------------------NNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID  247 (332)
Q Consensus       193 n~l~~~-------------------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  247 (332)
                      |.++.+                         .+..|.++++|++|++++|.++.+|.  +..+++|+.|++++|.++.+.
T Consensus       146 N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~  223 (440)
T 3zyj_A          146 NPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIR  223 (440)
T ss_dssp             CCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC--CTTCSSCCEEECTTSCCCEEC
T ss_pred             CcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc--cCCCcccCEEECCCCccCccC
Confidence            555444                         34456667777777777777777764  577888999999999999998


Q ss_pred             hhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCC
Q psy8550         248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN  317 (332)
Q Consensus       248 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  317 (332)
                      +..|..+++|+.|++++|.++++++..|..+++|+.|++++|+++++++..|..+++|+.|+|++|.+..
T Consensus       224 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          224 PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC  293 (440)
T ss_dssp             TTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred             hhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence            8999999999999999999999999999999999999999999999999999999999999999998754

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.95  E-value=5.6e-29  Score=250.00  Aligned_cols=217  Identities=19%  Similarity=0.181  Sum_probs=181.1

Q ss_pred             CCceEEecCCCcc-ccCCCCC--CCccEEEeecCCCc-cchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcC
Q psy8550         116 ETLVVTCKEANLD-VIPITLN--PSIQRLVLKYNRIK-TVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLN  191 (332)
Q Consensus       116 ~~~~~~c~~~~l~-~lp~~~~--~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~  191 (332)
                      .++.+...++.+. .+|..+.  +++++|++++|.++ .+|..++.+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus       395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  474 (768)
T 3rgz_A          395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD  474 (768)
T ss_dssp             CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred             CccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEec
Confidence            4556777777766 5555554  78888888888887 667788888899999999998887777888888999999999


Q ss_pred             CCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcC
Q psy8550         192 HNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVP  271 (332)
Q Consensus       192 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  271 (332)
                      +|++++..|..+.++++|++|++++|.+++..+..++.+++|+.|++++|.+++..|..++.+++|+.|++++|.+.+..
T Consensus       475 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i  554 (768)
T 3rgz_A          475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI  554 (768)
T ss_dssp             SSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBC
T ss_pred             CCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcC
Confidence            99998888888999999999999999998666666788899999999999998777888889999999999999877432


Q ss_pred             cc----------------------------------------------------------------------cccCCCCc
Q psy8550         272 TP----------------------------------------------------------------------SFIYLGML  281 (332)
Q Consensus       272 ~~----------------------------------------------------------------------~~~~l~~L  281 (332)
                      |.                                                                      .++.+++|
T Consensus       555 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L  634 (768)
T 3rgz_A          555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM  634 (768)
T ss_dssp             CGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCC
T ss_pred             ChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccc
Confidence            21                                                                      23345678


Q ss_pred             cEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCcccC
Q psy8550         282 AELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHWI  332 (332)
Q Consensus       282 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~l  332 (332)
                      +.|++++|++++.+|..++++++|+.|+|++|++++..|..|+.++.|+.|
T Consensus       635 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L  685 (768)
T 3rgz_A          635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL  685 (768)
T ss_dssp             CEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred             cEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEE
Confidence            999999999999999999999999999999999999999999999888754

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=6.8e-27  Score=221.05  Aligned_cols=180  Identities=30%  Similarity=0.453  Sum_probs=134.6

Q ss_pred             CCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCC-CcccccCccccCCCCCCCEEE
Q psy8550         136 PSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNH-NKLSSVNNKTFIGLKSLKVLN  213 (332)
Q Consensus       136 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~  213 (332)
                      ++|++|++++|.++.+++ .+..+++|++|++++|.+..+++..|..+++|++|++++ +.+..+++..|.++++|++|+
T Consensus       123 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~  202 (452)
T 3zyi_A          123 ASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLN  202 (452)
T ss_dssp             TTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEE
T ss_pred             ccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEE
Confidence            344444444444444443 344444555555555554444444444555555555544 334444444566777788888


Q ss_pred             ccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCc
Q psy8550         214 LRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTT  293 (332)
Q Consensus       214 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  293 (332)
                      +++|.++.+|.  +..+++|+.|++++|.++.+.+..|..+++|+.|++++|.++++++..|..+++|+.|++++|++++
T Consensus       203 L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  280 (452)
T 3zyi_A          203 LGMCNIKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS  280 (452)
T ss_dssp             CTTSCCSSCCC--CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCCccccccc--ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCc
Confidence            88888887764  5778899999999999999999999999999999999999999999899999999999999999999


Q ss_pred             cCchhcCCCCCCCEEEccCCCCCC
Q psy8550         294 LADGAFNGLGRLSALDLRGAGLTN  317 (332)
Q Consensus       294 ~~~~~~~~l~~L~~L~Ls~n~l~~  317 (332)
                      +++..|..+++|+.|++++|.+..
T Consensus       281 ~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          281 LPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             CCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             cChHHhccccCCCEEEccCCCcCC
Confidence            999999999999999999998764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.95  E-value=2.2e-28  Score=240.63  Aligned_cols=262  Identities=18%  Similarity=0.251  Sum_probs=144.9

Q ss_pred             hccchhhhhhhhhhhhhcCccc-cch-hhhhHHHHHH-----HHHHHHHHhhcCCCCCCC--CCcccCCCceEEecCCCc
Q psy8550          57 LIIPFEVRILNKLRIFINDSVL-FSS-VSDITMWSLL-----VTTALLLLVHQASAFCPP--DCDCNDETLVVTCKEANL  127 (332)
Q Consensus        57 ~~iP~~~~~l~~L~~l~~~~~~-~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~p~--~c~c~~~~~~~~c~~~~l  127 (332)
                      ..+|+.++++.+|+.|++++|. +++ ..+..+..+.     ..+..+....+.....|.  .......+..++..++.+
T Consensus       263 ~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l  342 (636)
T 4eco_A          263 TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQL  342 (636)
T ss_dssp             SSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCC
T ss_pred             ccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcC
Confidence            6889999999999999999997 877 4444433321     011111111222224454  334444566777777777


Q ss_pred             c-ccCCCCC--CCccEEEeecCCCccchhhhcCCCC-CcEEEeecCcCcccCCCCCCCCC--CCcEEEcCCCcccccCcc
Q psy8550         128 D-VIPITLN--PSIQRLVLKYNRIKTVDSAIQFYSS-LQHVDLSHNQLVNIPIRGFEPQE--KLVELQLNHNKLSSVNNK  201 (332)
Q Consensus       128 ~-~lp~~~~--~~L~~L~l~~~~l~~l~~~~~~l~~-L~~L~l~~~~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~  201 (332)
                      . .+| .+.  +++++|++++|.++.+|..+..+++ |++|++++|.++.++ ..+..++  +|++|++++|.+++..|.
T Consensus       343 ~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp-~~~~~~~l~~L~~L~Ls~N~l~~~~p~  420 (636)
T 4eco_A          343 EGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIP-NIFDAKSVSVMSAIDFSYNEIGSVDGK  420 (636)
T ss_dssp             EEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCC-SCCCTTCSSCEEEEECCSSCTTTTTTC
T ss_pred             ccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccc-hhhhhcccCccCEEECcCCcCCCcchh
Confidence            7 676 443  5666666666666666666666666 666666666666554 3343332  555555555555554444


Q ss_pred             ccC-------CCCCCCEEEccCCCCCCCCccccCCCC-------------------------------CCcEeeccCCCC
Q psy8550         202 TFI-------GLKSLKVLNLRGNFLEDLPDRLFAPLS-------------------------------HLEELDLGQNRI  243 (332)
Q Consensus       202 ~~~-------~l~~L~~L~L~~n~l~~~~~~~~~~l~-------------------------------~L~~L~L~~n~l  243 (332)
                      .|.       .+.+|++|++++|.++.+|+..+..++                               +|+.|++++|.+
T Consensus       421 ~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l  500 (636)
T 4eco_A          421 NFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL  500 (636)
T ss_dssp             SSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCC
T ss_pred             hhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcC
Confidence            444       444455555555544444444433344                               455555555555


Q ss_pred             cccChhhcC--CCCCCcEEeCCCCCCCCcCcccccCCCCccEEEc------CCCcCCccCchhcCCCCCCCEEEccCCCC
Q psy8550         244 SRIDQACFE--GLTALRILYLDDNQLRSVPTPSFIYLGMLAELRV------GLNVFTTLADGAFNGLGRLSALDLRGAGL  315 (332)
Q Consensus       244 ~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L------~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  315 (332)
                      +.++.. +.  .+++|+.|++++|.++++|. .++.+++|+.|++      ++|++.+..|..+.++++|++|++++|++
T Consensus       501 ~~lp~~-~~~~~l~~L~~L~Ls~N~l~~ip~-~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  578 (636)
T 4eco_A          501 TKLSDD-FRATTLPYLVGIDLSYNSFSKFPT-QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI  578 (636)
T ss_dssp             CBCCGG-GSTTTCTTCCEEECCSSCCSSCCC-GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred             CccChh-hhhccCCCcCEEECCCCCCCCcCh-hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence            544322 32  45555555555555555433 4445555555555      33445555555555556666666666666


Q ss_pred             CCccccc
Q psy8550         316 TNMMGHS  322 (332)
Q Consensus       316 ~~l~~~~  322 (332)
                      +.+|...
T Consensus       579 ~~ip~~~  585 (636)
T 4eco_A          579 RKVNEKI  585 (636)
T ss_dssp             CBCCSCC
T ss_pred             CccCHhH
Confidence            5555443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=2e-27  Score=215.51  Aligned_cols=214  Identities=18%  Similarity=0.177  Sum_probs=193.8

Q ss_pred             CCCceEEecCCCccccCCCCC--CCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCC
Q psy8550         115 DETLVVTCKEANLDVIPITLN--PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNH  192 (332)
Q Consensus       115 ~~~~~~~c~~~~l~~lp~~~~--~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~  192 (332)
                      .....+++.++.+..+|..+.  +++++|++++|.++.+|..++.+++|++|++++|.+..++ ..+..+++|++|++++
T Consensus        81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~  159 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALP-ASIASLNRLRELSIRA  159 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCC-GGGGGCTTCCEEEEEE
T ss_pred             cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCc-HHHhcCcCCCEEECCC
Confidence            456689999999999998775  7999999999999999999999999999999999999775 6799999999999999


Q ss_pred             CcccccCccccCC---------CCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCC
Q psy8550         193 NKLSSVNNKTFIG---------LKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLD  263 (332)
Q Consensus       193 n~l~~~~~~~~~~---------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  263 (332)
                      |++.+..|..+..         +++|++|++++|.++.+|.. ++.+++|++|++++|.++.+++ .+..+++|++|+++
T Consensus       160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~N~l~~l~~-~l~~l~~L~~L~Ls  237 (328)
T 4fcg_A          160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS-IANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLR  237 (328)
T ss_dssp             ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGG-GGGCTTCCEEEEESSCCCCCCG-GGGGCTTCCEEECT
T ss_pred             CCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHh-hcCCCCCCEEEccCCCCCcCch-hhccCCCCCEEECc
Confidence            8877777776654         99999999999999988876 6889999999999999998865 58899999999999


Q ss_pred             CCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCccc
Q psy8550         264 DNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHW  331 (332)
Q Consensus       264 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~  331 (332)
                      +|.+.+..+..++.+++|+.|++++|.+.+..|..++++++|+.|++++|++.+..|..+..++.|+.
T Consensus       238 ~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~  305 (328)
T 4fcg_A          238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI  305 (328)
T ss_dssp             TCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCE
T ss_pred             CCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceE
Confidence            99998888878999999999999999999999989999999999999999998888889999988864

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.95  E-value=1.8e-27  Score=232.66  Aligned_cols=261  Identities=21%  Similarity=0.263  Sum_probs=210.6

Q ss_pred             cCCchhhHhhhhccchhhhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCcccCCCceEEecCC
Q psy8550          46 FKSPTEILKSLLIIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKEA  125 (332)
Q Consensus        46 ~~~~~~~~~~l~~iP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~c~c~~~~~~~~c~~~  125 (332)
                      +..++.....+..+|+.++.+.+|+.|.+++|.+....+..                        ......+..++..++
T Consensus       280 L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~------------------------~~~l~~L~~L~l~~n  335 (606)
T 3t6q_A          280 LQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQIS------------------------ASNFPSLTHLSIKGN  335 (606)
T ss_dssp             CSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGC------------------------GGGCTTCSEEECCSC
T ss_pred             CCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhh------------------------hhccCcCCEEECCCC
Confidence            44555555666778888888888888888887776553211                        122345567888777


Q ss_pred             Ccc-ccCCC-C--CCCccEEEeecCCCccc---hhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCccccc
Q psy8550         126 NLD-VIPIT-L--NPSIQRLVLKYNRIKTV---DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSV  198 (332)
Q Consensus       126 ~l~-~lp~~-~--~~~L~~L~l~~~~l~~l---~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  198 (332)
                      .+. .+|.. +  .+++++|++++|.++.+   +..+..+++|++|++++|.+..+.+..|..+++|++|++++|.+.+.
T Consensus       336 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  415 (606)
T 3t6q_A          336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK  415 (606)
T ss_dssp             SSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECC
T ss_pred             CcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCc
Confidence            665 55554 2  27899999999998866   45788899999999999999988888899999999999999998877


Q ss_pred             Ccc-ccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCccc---ChhhcCCCCCCcEEeCCCCCCCCcCccc
Q psy8550         199 NNK-TFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRI---DQACFEGLTALRILYLDDNQLRSVPTPS  274 (332)
Q Consensus       199 ~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~~  274 (332)
                      .+. .+.++++|++|++++|.++..++..++.+++|++|++++|.+++.   .+..+..+++|+.|++++|.++++++..
T Consensus       416 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  495 (606)
T 3t6q_A          416 DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA  495 (606)
T ss_dssp             TTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTT
T ss_pred             ccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhh
Confidence            554 488899999999999999988888788899999999999988762   2256788899999999999999998888


Q ss_pred             ccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCccc
Q psy8550         275 FIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHW  331 (332)
Q Consensus       275 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~  331 (332)
                      |+.+++|+.|++++|++++.++..+.+++.| .|++++|+++++++..|..++.|+.
T Consensus       496 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~  551 (606)
T 3t6q_A          496 FTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRT  551 (606)
T ss_dssp             TTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSE
T ss_pred             hccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCE
Confidence            9999999999999999999998899999999 9999999999999988877766654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=1.6e-26  Score=205.32  Aligned_cols=203  Identities=28%  Similarity=0.363  Sum_probs=188.9

Q ss_pred             CCCceEEecCCCccccCCC-CC--CCccEEEeecCCCccc-hhhhcCCCCCcEEEeecCc-CcccCCCCCCCCCCCcEEE
Q psy8550         115 DETLVVTCKEANLDVIPIT-LN--PSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQ-LVNIPIRGFEPQEKLVELQ  189 (332)
Q Consensus       115 ~~~~~~~c~~~~l~~lp~~-~~--~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~L~  189 (332)
                      ...+.++..++.+..+|.. +.  +++++|++++|.++.+ +..+..+++|++|++++|. +..+.+..|..+++|++|+
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~  111 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence            3566899999999988854 32  7999999999999987 5589999999999999997 9999889999999999999


Q ss_pred             cCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCC
Q psy8550         190 LNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRS  269 (332)
Q Consensus       190 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  269 (332)
                      +++|.++++.+..|.++++|++|++++|.++.+++..++.+++|+.|++++|.++.+++..+..+++|+.|++++|.+++
T Consensus       112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  191 (285)
T 1ozn_A          112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (285)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence            99999999999999999999999999999999999888999999999999999999988889999999999999999999


Q ss_pred             cCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCC
Q psy8550         270 VPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN  317 (332)
Q Consensus       270 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  317 (332)
                      +.+..++.+++|+.|++++|.++++++..+..+++|+.|++++|.+..
T Consensus       192 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence            988899999999999999999999999889999999999999999874

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.95  E-value=4.2e-28  Score=218.58  Aligned_cols=253  Identities=17%  Similarity=0.176  Sum_probs=129.2

Q ss_pred             CCCCCCCCC---CccCCchhhHhhhh---ccchhhhhhhhhhhhhcCc-cccchhhhhHHHHHHHHHHHHHHhhcCCCCC
Q psy8550          35 HPGFQNNPK---SNFKSPTEILKSLL---IIPFEVRILNKLRIFINDS-VLFSSVSDITMWSLLVTTALLLLVHQASAFC  107 (332)
Q Consensus        35 ~~g~~~~p~---~~~~~~~~~~~~l~---~iP~~~~~l~~L~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (332)
                      |.|+..-..   ..++.+++....+.   .+|+.++++.+|+.|++++ +.+.+..+                       
T Consensus        38 w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p-----------------------   94 (313)
T 1ogq_A           38 WLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP-----------------------   94 (313)
T ss_dssp             STTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCC-----------------------
T ss_pred             CcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCC-----------------------
Confidence            566654332   23455555555554   6888999999999888773 55554321                       


Q ss_pred             CCCCcccCCCceEEecCCCcc-ccCCCCC--CCccEEEeecCCCc-cchhhhcCCCCCcEEEeecCcCcccCCCCCCCCC
Q psy8550         108 PPDCDCNDETLVVTCKEANLD-VIPITLN--PSIQRLVLKYNRIK-TVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQE  183 (332)
Q Consensus       108 p~~c~c~~~~~~~~c~~~~l~-~lp~~~~--~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~  183 (332)
                       ........++.++..++.+. .+|..+.  +++++|++++|.++ .+|..+..+++|++|++++|.+++..+..+..++
T Consensus        95 -~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~  173 (313)
T 1ogq_A           95 -PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS  173 (313)
T ss_dssp             -GGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCC
T ss_pred             -hhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhh
Confidence             11122233344444444444 3443332  45555555555554 4444555555555555555555533334444444


Q ss_pred             -CCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeC
Q psy8550         184 -KLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYL  262 (332)
Q Consensus       184 -~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  262 (332)
                       +|++|++++|.+++..|..+..+. |++|++++|.++..++..+..+++|+.|++++|.++...+. +..+++|++|++
T Consensus       174 ~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~L  251 (313)
T 1ogq_A          174 KLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDL  251 (313)
T ss_dssp             TTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEEC
T ss_pred             hcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEEC
Confidence             555555555555544444454444 55555555555544444445555555555555555443333 444455555555


Q ss_pred             CCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCC
Q psy8550         263 DDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAG  314 (332)
Q Consensus       263 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  314 (332)
                      ++|.+++..+..++.+++|+.|++++|++++.+|.. +.+++|+.+++++|.
T Consensus       252 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          252 RNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             CSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred             cCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence            555555444444555555555555555555444432 444555555555554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.95  E-value=7e-27  Score=198.02  Aligned_cols=204  Identities=26%  Similarity=0.406  Sum_probs=180.1

Q ss_pred             CCCCCcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCCCCC
Q psy8550         107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKL  185 (332)
Q Consensus       107 ~p~~c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L  185 (332)
                      ||..|.|..  ..+.|.+..+..+|..+++++++|++++|.++.+++ .+..+++|++|++++|+++.+++..|..+++|
T Consensus         1 Cp~~C~C~~--~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L   78 (208)
T 2o6s_A            1 CPSRCSCSG--TTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSL   78 (208)
T ss_dssp             CCTTCEEET--TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CcCCCEECC--CEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCc
Confidence            899999964  479999999999999999999999999999998887 57899999999999999999998889999999


Q ss_pred             cEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCC
Q psy8550         186 VELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDN  265 (332)
Q Consensus       186 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  265 (332)
                      ++|++++|.++++++..|.++++|++|++++|.++.+++..+..+++|+.|++++|.++.+++..+..+++|+.|++++|
T Consensus        79 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  158 (208)
T 2o6s_A           79 TYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN  158 (208)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred             CEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence            99999999999998888999999999999999999999988899999999999999999998888899999999999999


Q ss_pred             CCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccc
Q psy8550         266 QLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSM  323 (332)
Q Consensus       266 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~  323 (332)
                      .+.+       .+++|+.|++.+|++++..|..++.++.    +...|...+-+...+
T Consensus       159 ~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~----~~~~C~~~~~~~~~~  205 (208)
T 2o6s_A          159 PWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP----DSAKCSGSGKPVRSI  205 (208)
T ss_dssp             CBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT----TCSBBTTTCCBGGGC
T ss_pred             Ceec-------CCCCHHHHHHHHHhCCceeeccCccccC----CccccccCCCcceee
Confidence            6653       4568899999999999998888887654    555555554444443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.94  E-value=3.4e-27  Score=230.81  Aligned_cols=220  Identities=26%  Similarity=0.363  Sum_probs=197.5

Q ss_pred             CCcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEE
Q psy8550         110 DCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVEL  188 (332)
Q Consensus       110 ~c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L  188 (332)
                      .|.|......++|.+..++.+|.++++++++|++++|.++.+++ .+.++++|++|++++|.++.+++.+|.++++|++|
T Consensus         6 ~c~~~~~~~~~~c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L   85 (606)
T 3vq2_A            6 PCIEVVPNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNL   85 (606)
T ss_dssp             CCEEEETTTEEECTTSCCSSCCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             CceecCCCCceEccCCCcccCCCCCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEe
Confidence            37776556689999999999999999999999999999998877 89999999999999999999998999999999999


Q ss_pred             EcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccC-hhhcCCCCCCcEEeCCCCCC
Q psy8550         189 QLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID-QACFEGLTALRILYLDDNQL  267 (332)
Q Consensus       189 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l  267 (332)
                      ++++|.++++.|.+|+++++|++|++++|.++.+++..++.+++|++|++++|.++.+. |..++++++|++|++++|.+
T Consensus        86 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l  165 (606)
T 3vq2_A           86 ILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI  165 (606)
T ss_dssp             ECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCC
T ss_pred             ECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcc
Confidence            99999999999999999999999999999999999877899999999999999998743 77799999999999999999


Q ss_pred             CCcCcccccCCCCcc----EEEcCCCcCCccCchhcCCCCCCCEEEccCCCCC-CcccccccCCCCcc
Q psy8550         268 RSVPTPSFIYLGMLA----ELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT-NMMGHSMALGDYLH  330 (332)
Q Consensus       268 ~~~~~~~~~~l~~L~----~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~~l~~L~  330 (332)
                      +++++..++.+.+|+    .+++++|.++++++..+... +|+.|++++|.++ ...+..++.++.|+
T Consensus       166 ~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~  232 (606)
T 3vq2_A          166 QTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLH  232 (606)
T ss_dssp             CEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCE
T ss_pred             eecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccc
Confidence            999887787766554    89999999999999777765 8999999999887 45555566666554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=1.3e-26  Score=207.95  Aligned_cols=207  Identities=24%  Similarity=0.343  Sum_probs=179.2

Q ss_pred             ccCCCceEEecCCCcccc---CCCC--CCCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCC-CCCCCCCCCc
Q psy8550         113 CNDETLVVTCKEANLDVI---PITL--NPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPI-RGFEPQEKLV  186 (332)
Q Consensus       113 c~~~~~~~~c~~~~l~~l---p~~~--~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~~l~~L~  186 (332)
                      ....++.++..++.+..+   |..+  .+++++|++++|.++.+|..+..+++|++|++++|.+..+++ ..+..+++|+
T Consensus        50 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  129 (306)
T 2z66_A           50 KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI  129 (306)
T ss_dssp             TCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCC
T ss_pred             ccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCC
Confidence            334556677777666544   2111  267888888888888888888889999999999999988875 6789999999


Q ss_pred             EEEcCCCcccccCccccCCCCCCCEEEccCCCCCC-CCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCC
Q psy8550         187 ELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLED-LPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDN  265 (332)
Q Consensus       187 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  265 (332)
                      +|++++|.+.+..+..|.++++|++|++++|.+++ ..+..+..+++|+.|++++|.++.+.+..+..+++|+.|++++|
T Consensus       130 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N  209 (306)
T 2z66_A          130 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN  209 (306)
T ss_dssp             EEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred             EEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCC
Confidence            99999999999989999999999999999999986 44455789999999999999999998888999999999999999


Q ss_pred             CCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCC-CCCCEEEccCCCCCCcc
Q psy8550         266 QLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGL-GRLSALDLRGAGLTNMM  319 (332)
Q Consensus       266 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~l~  319 (332)
                      .++++++..+..+++|+.|++++|++++..+..+..+ ++|++|++++|.+++..
T Consensus       210 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c  264 (306)
T 2z66_A          210 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC  264 (306)
T ss_dssp             CCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred             ccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence            9999998889999999999999999999999889988 49999999999997643

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.94  E-value=9.7e-27  Score=230.60  Aligned_cols=182  Identities=24%  Similarity=0.353  Sum_probs=135.1

Q ss_pred             CcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEE
Q psy8550         111 CDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQ  189 (332)
Q Consensus       111 c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~  189 (332)
                      |.|..  ..++|.+..++.+|.++++++++|++++|.++.+++ .+.++++|++|++++|.+..+.+..|+.+++|++|+
T Consensus         2 C~~~~--~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~   79 (680)
T 1ziw_A            2 CTVSH--EVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLN   79 (680)
T ss_dssp             --CBS--SEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEE
T ss_pred             ceeEC--CeeECCCCCccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEE
Confidence            55653  369999999999999898999999999999887776 688888888888888888888777777888888888


Q ss_pred             cCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCC
Q psy8550         190 LNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRS  269 (332)
Q Consensus       190 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  269 (332)
                      +++|.++.+++.+|+++++|++|++++|.++.+++..|+.+++|++|++++|.++.+.+..++++++|++|++++|.+++
T Consensus        80 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  159 (680)
T 1ziw_A           80 LQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA  159 (680)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCC
T ss_pred             CCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccc
Confidence            88888887777678888888888888888877777667777788888888877777766666777777777777776666


Q ss_pred             cCccccc--CCCCccEEEcCCCcCCcc
Q psy8550         270 VPTPSFI--YLGMLAELRVGLNVFTTL  294 (332)
Q Consensus       270 ~~~~~~~--~l~~L~~L~L~~n~l~~~  294 (332)
                      +++..++  .+++|+.|++++|.+++.
T Consensus       160 ~~~~~~~~~~~~~L~~L~L~~n~l~~~  186 (680)
T 1ziw_A          160 LKSEELDIFANSSLKKLELSSNQIKEF  186 (680)
T ss_dssp             BCHHHHGGGTTCEESEEECTTCCCCCB
T ss_pred             cCHHHhhccccccccEEECCCCccccc
Confidence            5543332  224444444444444433

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.94  E-value=5.7e-27  Score=211.15  Aligned_cols=214  Identities=19%  Similarity=0.214  Sum_probs=166.6

Q ss_pred             CCceEEecCCCcc---ccCCCCC--CCccEEEeec-CCCc-cchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEE
Q psy8550         116 ETLVVTCKEANLD---VIPITLN--PSIQRLVLKY-NRIK-TVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVEL  188 (332)
Q Consensus       116 ~~~~~~c~~~~l~---~lp~~~~--~~L~~L~l~~-~~l~-~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L  188 (332)
                      ....++..++.+.   .+|..+.  +++++|++++ |.+. .+|..++++++|++|++++|.+.+..+..|..+++|++|
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  130 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence            3455666777776   4676654  7899999995 8877 788889999999999999999987777889999999999


Q ss_pred             EcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCC-CCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCC
Q psy8550         189 QLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLS-HLEELDLGQNRISRIDQACFEGLTALRILYLDDNQL  267 (332)
Q Consensus       189 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  267 (332)
                      ++++|.+++..|..|.++++|++|++++|.++...+..+..+. +|+.|++++|.+++..+..+..+. |+.|++++|.+
T Consensus       131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l  209 (313)
T 1ogq_A          131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML  209 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred             eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence            9999999988788899999999999999999843333456676 888888888888866666677665 77788887777


Q ss_pred             CCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCccc
Q psy8550         268 RSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHW  331 (332)
Q Consensus       268 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~  331 (332)
                      ++.++..++.+++|+.|++++|.+++.++. +..+++|++|++++|++++..|..|..++.|+.
T Consensus       210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  272 (313)
T 1ogq_A          210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS  272 (313)
T ss_dssp             EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCE
T ss_pred             cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCE
Confidence            777666777777777777777777766663 666777777777777777666666776666654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.94  E-value=1.9e-27  Score=234.07  Aligned_cols=202  Identities=19%  Similarity=0.235  Sum_probs=156.2

Q ss_pred             CceEEecCCCccccCCCCC----CCccEEEeecCCCcc-chhhhc-------CCCCCcEEEeecCcCcccCCCCCCCCCC
Q psy8550         117 TLVVTCKEANLDVIPITLN----PSIQRLVLKYNRIKT-VDSAIQ-------FYSSLQHVDLSHNQLVNIPIRGFEPQEK  184 (332)
Q Consensus       117 ~~~~~c~~~~l~~lp~~~~----~~L~~L~l~~~~l~~-l~~~~~-------~l~~L~~L~l~~~~l~~~~~~~~~~l~~  184 (332)
                      +..++..++.+..+|..+.    +++++|++++|.++. +|..+.       .+++|++|++++|.++.+++..+..+++
T Consensus       379 L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~  458 (636)
T 4eco_A          379 VENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSP  458 (636)
T ss_dssp             CCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCC
T ss_pred             CcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCC
Confidence            5566666666666665443    256777777777663 344555       5667788888888877777666667888


Q ss_pred             CcEEEcCCCcccccCccccCCCC-------CCCEEEccCCCCCCCCcccc-CCCCCCcEeeccCCCCcccChhhcCCCCC
Q psy8550         185 LVELQLNHNKLSSVNNKTFIGLK-------SLKVLNLRGNFLEDLPDRLF-APLSHLEELDLGQNRISRIDQACFEGLTA  256 (332)
Q Consensus       185 L~~L~l~~n~l~~~~~~~~~~l~-------~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  256 (332)
                      |++|++++|+++.+++..+....       +|++|++++|.++.+|...+ ..+++|+.|++++|.++.+ |..+..+++
T Consensus       459 L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~i-p~~~~~l~~  537 (636)
T 4eco_A          459 LSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKF-PTQPLNSST  537 (636)
T ss_dssp             CSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSC-CCGGGGCSS
T ss_pred             CCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCc-ChhhhcCCC
Confidence            88888888888877665554443       89999999999998887754 4899999999999999996 556788999


Q ss_pred             CcEEeC------CCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCccccc
Q psy8550         257 LRILYL------DDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHS  322 (332)
Q Consensus       257 L~~L~L------~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~  322 (332)
                      |+.|++      ++|.+.+..+..++.+++|+.|++++|+++.++. .+.  ++|+.||+++|++..++...
T Consensus       538 L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~-~~~--~~L~~L~Ls~N~l~~~~~~~  606 (636)
T 4eco_A          538 LKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNE-KIT--PNISVLDIKDNPNISIDLSY  606 (636)
T ss_dssp             CCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCS-CCC--TTCCEEECCSCTTCEEECTT
T ss_pred             CCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCH-hHh--CcCCEEECcCCCCccccHHh
Confidence            999999      4577777777789999999999999999966655 444  79999999999998877433

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.94  E-value=7.8e-27  Score=228.60  Aligned_cols=227  Identities=26%  Similarity=0.299  Sum_probs=191.0

Q ss_pred             cCCCCCCCCCcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCC
Q psy8550         102 QASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFE  180 (332)
Q Consensus       102 ~~~~~~p~~c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~  180 (332)
                      .....+...|.|......++|.+.+++++|.++|+++++|+|++|.|+.+++ +|.++++|++|++++|+|+.+++.+|.
T Consensus        18 ~~~p~~~~~c~~~~~~~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~   97 (635)
T 4g8a_A           18 SSIPESWEPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ   97 (635)
T ss_dssp             -------CCSEEEETTTEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred             CCCCCCCCCccccCCCCEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhc
Confidence            3344466678887777789999999999999999999999999999999987 899999999999999999999999999


Q ss_pred             CCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccC-hhhcCCCCCCcE
Q psy8550         181 PQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID-QACFEGLTALRI  259 (332)
Q Consensus       181 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~  259 (332)
                      ++++|++|+|++|+++++++.+|.++++|++|++++|.++.+++..|+++++|++|++++|.++.+. +..++.+++|++
T Consensus        98 ~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~  177 (635)
T 4g8a_A           98 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH  177 (635)
T ss_dssp             TCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred             CCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhh
Confidence            9999999999999999999999999999999999999999999988999999999999999998753 567888999999


Q ss_pred             EeCCCCCCCCcCcccccCCCC----ccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCC-CcccccccCCCCc
Q psy8550         260 LYLDDNQLRSVPTPSFIYLGM----LAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT-NMMGHSMALGDYL  329 (332)
Q Consensus       260 L~L~~n~l~~~~~~~~~~l~~----L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~~l~~L  329 (332)
                      |++++|.++++++..+..+.+    ...++++.|.++.+.+..+.. ..+..+++++|... .+.+..+..+..+
T Consensus       178 L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~-~~~~~l~l~~n~~~~~~~~~~~~~l~~l  251 (635)
T 4g8a_A          178 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGL  251 (635)
T ss_dssp             EECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSSHHHHHHHHHTTTTC
T ss_pred             hcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccc-hhhhhhhhhcccccccccchhhcCCccc
Confidence            999999999998877765544    347899999999988865554 45678888887544 3333444444433

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.94  E-value=2.6e-26  Score=212.92  Aligned_cols=251  Identities=19%  Similarity=0.228  Sum_probs=173.7

Q ss_pred             cCCchhhHhhhhccchh-hhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCcccCCCceEEecC
Q psy8550          46 FKSPTEILKSLLIIPFE-VRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKE  124 (332)
Q Consensus        46 ~~~~~~~~~~l~~iP~~-~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~c~c~~~~~~~~c~~  124 (332)
                      ++.+......+..+|.. ++.+++|+.|+++++.+....+                        ........++.++..+
T Consensus        47 l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~------------------------~~~~~l~~L~~L~L~~  102 (390)
T 3o6n_A           47 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT------------------------YAFAYAHTIQKLYMGF  102 (390)
T ss_dssp             CSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECT------------------------TTTTTCTTCCEEECCS
T ss_pred             ceEEEecCCchhhCChhHhcccccCcEEECCCCcccccCh------------------------hhccCCCCcCEEECCC
Confidence            34444454556778877 6888899998888887765532                        1123334556777777


Q ss_pred             CCccccCCCC-C--CCccEEEeecCCCccchhh-hcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCc
Q psy8550         125 ANLDVIPITL-N--PSIQRLVLKYNRIKTVDSA-IQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNN  200 (332)
Q Consensus       125 ~~l~~lp~~~-~--~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  200 (332)
                      +.+..+|... .  +++++|++++|.++.+|.. +.++++|++|++++|.+..+++..|..+++|++|++++|.++++..
T Consensus       103 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  182 (390)
T 3o6n_A          103 NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL  182 (390)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCG
T ss_pred             CCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcccc
Confidence            7777776542 2  6788888888888877774 5778888888888888888777778888888888888887776643


Q ss_pred             cccCCC-------------------------------------CCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCC
Q psy8550         201 KTFIGL-------------------------------------KSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRI  243 (332)
Q Consensus       201 ~~~~~l-------------------------------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  243 (332)
                      ..+.++                                     ++|+.|++++|.++..+  .+..+++|++|++++|.+
T Consensus       183 ~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~Ls~n~l  260 (390)
T 3o6n_A          183 SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNEL  260 (390)
T ss_dssp             GGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCC
T ss_pred             ccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccH--HHcCCCCccEEECCCCcC
Confidence            333222                                     24555555555555442  246677788888888877


Q ss_pred             cccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccc
Q psy8550         244 SRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSM  323 (332)
Q Consensus       244 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~  323 (332)
                      +.+.+..+..+++|+.|++++|.+++++. .+..+++|+.|++++|+++++++ .+..+++|+.|++++|+++.++...+
T Consensus       261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~l~~L~~L~L~~n~l~~~~~-~~~~l~~L~~L~L~~N~i~~~~~~~~  338 (390)
T 3o6n_A          261 EKIMYHPFVKMQRLERLYISNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVER-NQPQFDRLENLYLDHNSIVTLKLSTH  338 (390)
T ss_dssp             CEEESGGGTTCSSCCEEECCSSCCCEEEC-SSSCCTTCCEEECCSSCCCCCGG-GHHHHTTCSEEECCSSCCCCCCCCTT
T ss_pred             CCcChhHccccccCCEEECCCCcCcccCc-ccCCCCCCCEEECCCCcceecCc-cccccCcCCEEECCCCccceeCchhh
Confidence            77767777777888888888888877655 44567788888888888876655 46667788888888888877764433


Q ss_pred             c
Q psy8550         324 A  324 (332)
Q Consensus       324 ~  324 (332)
                      .
T Consensus       339 ~  339 (390)
T 3o6n_A          339 H  339 (390)
T ss_dssp             C
T ss_pred             c
Confidence            3

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=2.4e-26  Score=208.40  Aligned_cols=209  Identities=20%  Similarity=0.164  Sum_probs=181.3

Q ss_pred             ccCCCceEEecCCCccccCCCCC--CCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCC---------C
Q psy8550         113 CNDETLVVTCKEANLDVIPITLN--PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFE---------P  181 (332)
Q Consensus       113 c~~~~~~~~c~~~~l~~lp~~~~--~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~---------~  181 (332)
                      ....++.++..++.+..+|..+.  ++|++|++++|.++.+|..++++++|++|++++|.+.+..+..+.         +
T Consensus       102 ~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~  181 (328)
T 4fcg_A          102 RLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG  181 (328)
T ss_dssp             GGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEE
T ss_pred             hCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhcc
Confidence            34456678888888888887665  899999999999999999999999999999999876665555554         4


Q ss_pred             CCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEe
Q psy8550         182 QEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILY  261 (332)
Q Consensus       182 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  261 (332)
                      +++|++|++++|.++.+ |..++++++|++|++++|.++.+|+. ++.+++|+.|++++|.+.+..|..++.+++|+.|+
T Consensus       182 l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~N~l~~l~~~-l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~  259 (328)
T 4fcg_A          182 LVNLQSLRLEWTGIRSL-PASIANLQNLKSLKIRNSPLSALGPA-IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI  259 (328)
T ss_dssp             STTCCEEEEEEECCCCC-CGGGGGCTTCCEEEEESSCCCCCCGG-GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred             CCCCCEEECcCCCcCcc-hHhhcCCCCCCEEEccCCCCCcCchh-hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence            99999999999999966 67799999999999999999999886 68899999999999999888888899999999999


Q ss_pred             CCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccc
Q psy8550         262 LDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSM  323 (332)
Q Consensus       262 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~  323 (332)
                      +++|.+.+..+..++.+++|+.|++++|++.+..|..++++++++.+++..+.+..+.....
T Consensus       260 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l~~~~~  321 (328)
T 4fcg_A          260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRP  321 (328)
T ss_dssp             CTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC------
T ss_pred             CCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHHhhhhc
Confidence            99999888777789999999999999999999999999999999999999888777665443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.94  E-value=8.2e-26  Score=197.13  Aligned_cols=181  Identities=29%  Similarity=0.444  Sum_probs=171.3

Q ss_pred             CCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEcc
Q psy8550         136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLR  215 (332)
Q Consensus       136 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  215 (332)
                      .+.++++++++.++.+|..+.  +++++|++++|.+..+.+..|..+++|++|++++|.++++.+..|.++++|++|+++
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            356789999999999998655  689999999999999998899999999999999999999999999999999999999


Q ss_pred             CCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccC
Q psy8550         216 GNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA  295 (332)
Q Consensus       216 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  295 (332)
                      +|.++.+++..|..+++|++|++++|.++.+++..+..+++|++|++++|+++++++..|+.+++|+.|++++|++++++
T Consensus        92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  171 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP  171 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence            99999999988999999999999999999998888899999999999999999999988999999999999999999999


Q ss_pred             chhcCCCCCCCEEEccCCCCCCc
Q psy8550         296 DGAFNGLGRLSALDLRGAGLTNM  318 (332)
Q Consensus       296 ~~~~~~l~~L~~L~Ls~n~l~~l  318 (332)
                      +..+..+++|+.|++++|.+++.
T Consensus       172 ~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          172 HGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTTTTTCTTCCEEECCSCCBCTT
T ss_pred             HHHHhCCCCCCEEEeeCCceeCC
Confidence            98999999999999999999875

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.94  E-value=2.2e-26  Score=223.25  Aligned_cols=203  Identities=28%  Similarity=0.381  Sum_probs=188.8

Q ss_pred             CCcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEE
Q psy8550         110 DCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVEL  188 (332)
Q Consensus       110 ~c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L  188 (332)
                      .|.|......++|.+..++.+|..++++++.|++++|.++.+++ ++.++++|++|++++|.++.+++..|+.+++|++|
T Consensus         2 ~c~~~~~~~~~~c~~~~l~~ip~~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L   81 (570)
T 2z63_A            2 PCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL   81 (570)
T ss_dssp             CSEEEETTTEEECCSSCCSSCCSSSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             CccccCCCcEEEeCCCCccccCCCccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEE
Confidence            57787777789999999999999999999999999999998876 89999999999999999999998999999999999


Q ss_pred             EcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccC-hhhcCCCCCCcEEeCCCCCC
Q psy8550         189 QLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID-QACFEGLTALRILYLDDNQL  267 (332)
Q Consensus       189 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l  267 (332)
                      ++++|.++.++|.+|.++++|++|++++|.++.+++..++.+++|++|++++|.++.+. |..++++++|++|++++|.+
T Consensus        82 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l  161 (570)
T 2z63_A           82 ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI  161 (570)
T ss_dssp             ECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCC
T ss_pred             eCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcc
Confidence            99999999999999999999999999999999999877899999999999999999753 77799999999999999999


Q ss_pred             CCcCcccccCCCCc----cEEEcCCCcCCccCchhcCCCCCCCEEEccCC
Q psy8550         268 RSVPTPSFIYLGML----AELRVGLNVFTTLADGAFNGLGRLSALDLRGA  313 (332)
Q Consensus       268 ~~~~~~~~~~l~~L----~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  313 (332)
                      +++++..++.+.+|    ..+++++|.++++++..+... +|+.|++++|
T Consensus       162 ~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n  210 (570)
T 2z63_A          162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNN  210 (570)
T ss_dssp             CEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESC
T ss_pred             ceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccc
Confidence            99988888888888    899999999999999888776 7999999987

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.94  E-value=1.6e-26  Score=232.80  Aligned_cols=272  Identities=15%  Similarity=0.190  Sum_probs=162.6

Q ss_pred             CCchhhHhh-hhccchhhhhhhhhhhhhcCccc-cch-hhhhHHHHHH-------HHHHHHHHhhcCCCCCCC--CCccc
Q psy8550          47 KSPTEILKS-LLIIPFEVRILNKLRIFINDSVL-FSS-VSDITMWSLL-------VTTALLLLVHQASAFCPP--DCDCN  114 (332)
Q Consensus        47 ~~~~~~~~~-l~~iP~~~~~l~~L~~l~~~~~~-~~~-~~~~~~~~~~-------~~~~~~~~~~~~~~~~p~--~c~c~  114 (332)
                      ..+.+.... ...+|..+++|.+|+.|++++|. +++ ..+..+..+.       .+. .+....+.....|.  .....
T Consensus       494 ~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~-~L~Ls~N~L~~ip~~~~l~~L  572 (876)
T 4ecn_A          494 TDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ-IFYMGYNNLEEFPASASLQKM  572 (876)
T ss_dssp             CEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCC-EEECCSSCCCBCCCHHHHTTC
T ss_pred             CEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCcc-EEEeeCCcCCccCChhhhhcC
Confidence            344444333 37889999999999999999997 877 4444433222       111 11111222224454  33344


Q ss_pred             CCCceEEecCCCccccCCCCC--CCccEEEeecCCCccchhhhcCCCC-CcEEEeecCcCcccCCCCCCCCCC--CcEEE
Q psy8550         115 DETLVVTCKEANLDVIPITLN--PSIQRLVLKYNRIKTVDSAIQFYSS-LQHVDLSHNQLVNIPIRGFEPQEK--LVELQ  189 (332)
Q Consensus       115 ~~~~~~~c~~~~l~~lp~~~~--~~L~~L~l~~~~l~~l~~~~~~l~~-L~~L~l~~~~l~~~~~~~~~~l~~--L~~L~  189 (332)
                      ..+..+++.++.+..+| .+.  ++|+.|++++|.++.+|..+..+++ |++|++++|.+..++ ..+..++.  |+.|+
T Consensus       573 ~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp-~~~~~~~~~~L~~L~  650 (876)
T 4ecn_A          573 VKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIP-NIFNAKSVYVMGSVD  650 (876)
T ss_dssp             TTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCC-SCCCTTCSSCEEEEE
T ss_pred             CCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCc-hhhhccccCCCCEEE
Confidence            45667777777777777 444  6778888888887777777777777 888888887777655 34443322  44444


Q ss_pred             cCCCcc-----------------------------cccCccccCCCCCCCEEEccCCCCCCCCccccCCC-------CCC
Q psy8550         190 LNHNKL-----------------------------SSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPL-------SHL  233 (332)
Q Consensus       190 l~~n~l-----------------------------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-------~~L  233 (332)
                      +++|.+                             +.+++..+..+++|+.|+|++|.++.+|...+...       ++|
T Consensus       651 Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L  730 (876)
T 4ecn_A          651 FSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL  730 (876)
T ss_dssp             CCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGC
T ss_pred             CcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCc
Confidence            444444                             44433333345566666666666665555543322       256


Q ss_pred             cEeeccCCCCcccChhhcC--CCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCC------CcCCccCchhcCCCCCC
Q psy8550         234 EELDLGQNRISRIDQACFE--GLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGL------NVFTTLADGAFNGLGRL  305 (332)
Q Consensus       234 ~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~------n~l~~~~~~~~~~l~~L  305 (332)
                      +.|++++|.++.++. .+.  .+++|+.|++++|.++++|. .++.+++|+.|++++      |.+.+..|..+.++++|
T Consensus       731 ~~L~Ls~N~L~~lp~-~l~~~~l~~L~~L~Ls~N~L~~lp~-~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L  808 (876)
T 4ecn_A          731 TTIDLRFNKLTSLSD-DFRATTLPYLSNMDVSYNCFSSFPT-QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSL  808 (876)
T ss_dssp             CEEECCSSCCCCCCG-GGSTTTCTTCCEEECCSSCCSSCCC-GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSC
T ss_pred             cEEECCCCCCccchH-HhhhccCCCcCEEEeCCCCCCccch-hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCC
Confidence            666666666665533 333  56666666666666666543 455666666666654      55566666666666666


Q ss_pred             CEEEccCCCCCCcccccc
Q psy8550         306 SALDLRGAGLTNMMGHSM  323 (332)
Q Consensus       306 ~~L~Ls~n~l~~l~~~~~  323 (332)
                      +.|+|++|++..+|...+
T Consensus       809 ~~L~Ls~N~L~~Ip~~l~  826 (876)
T 4ecn_A          809 IQLQIGSNDIRKVDEKLT  826 (876)
T ss_dssp             CEEECCSSCCCBCCSCCC
T ss_pred             CEEECCCCCCCccCHhhc
Confidence            677777666666655543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.94  E-value=8.1e-26  Score=223.95  Aligned_cols=215  Identities=24%  Similarity=0.333  Sum_probs=184.9

Q ss_pred             CCceEEecCCCccccCC-CCC--CCccEEEeecCCCc-cchh-hhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEc
Q psy8550         116 ETLVVTCKEANLDVIPI-TLN--PSIQRLVLKYNRIK-TVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQL  190 (332)
Q Consensus       116 ~~~~~~c~~~~l~~lp~-~~~--~~L~~L~l~~~~l~-~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l  190 (332)
                      ....++..++.+..++. .+.  ++++.|++++|.+. .+|. .+.++++|++|++++|.+..+.+..|..+++|+.|++
T Consensus       382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l  461 (680)
T 1ziw_A          382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML  461 (680)
T ss_dssp             CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEEC
T ss_pred             cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchh
Confidence            45678888888887654 332  78999999999987 5664 8889999999999999999988889999999999999


Q ss_pred             CCCccc--ccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccCh--------hhcCCCCCCcEE
Q psy8550         191 NHNKLS--SVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQ--------ACFEGLTALRIL  260 (332)
Q Consensus       191 ~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------~~~~~l~~L~~L  260 (332)
                      ++|.+.  +..|..|.++++|++|++++|.++.+++..|..+++|+.|++++|.++.+.+        ..+.++++|+.|
T Consensus       462 ~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L  541 (680)
T 1ziw_A          462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL  541 (680)
T ss_dssp             TTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEE
T ss_pred             ccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEE
Confidence            999886  4467889999999999999999999999888999999999999999987633        236788999999


Q ss_pred             eCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCccccccc-CCCCcc
Q psy8550         261 YLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMA-LGDYLH  330 (332)
Q Consensus       261 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~-~l~~L~  330 (332)
                      ++++|.++.+++..|+.+++|+.|++++|+++++++..|.++++|+.|++++|+++++++..|. .++.|+
T Consensus       542 ~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~  612 (680)
T 1ziw_A          542 NLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLT  612 (680)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCS
T ss_pred             ECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccC
Confidence            9999999999988899999999999999999999998899999999999999999999998776 455554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.94  E-value=3.4e-26  Score=223.71  Aligned_cols=214  Identities=24%  Similarity=0.215  Sum_probs=179.2

Q ss_pred             CCceEEecCC-CccccCCCCCCCccEEEeecCCCccc---hhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcC
Q psy8550         116 ETLVVTCKEA-NLDVIPITLNPSIQRLVLKYNRIKTV---DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLN  191 (332)
Q Consensus       116 ~~~~~~c~~~-~l~~lp~~~~~~L~~L~l~~~~l~~l---~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~  191 (332)
                      .+..++..++ .+..++..-.+++++|++++|.++.+   +..+..+++|++|++++|.+..++ ..+..+++|++|+++
T Consensus       329 ~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~  407 (606)
T 3vq2_A          329 FLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQ  407 (606)
T ss_dssp             SCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECT
T ss_pred             ccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch-hhccCCCCCCeeECC
Confidence            3445666555 33344433447889999999988865   668889999999999999988887 788889999999999


Q ss_pred             CCcccccCc-cccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcc-cChhhcCCCCCCcEEeCCCCCCCC
Q psy8550         192 HNKLSSVNN-KTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISR-IDQACFEGLTALRILYLDDNQLRS  269 (332)
Q Consensus       192 ~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~  269 (332)
                      +|.+.+..+ ..+.++++|++|++++|.++...+..++.+++|++|++++|.+++ +.+..++.+++|+.|++++|.+++
T Consensus       408 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~  487 (606)
T 3vq2_A          408 HSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ  487 (606)
T ss_dssp             TSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred             CCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCc
Confidence            999998877 678899999999999999998877778889999999999999886 457778889999999999999999


Q ss_pred             cCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCC-Cccc
Q psy8550         270 VPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGD-YLHW  331 (332)
Q Consensus       270 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~-~L~~  331 (332)
                      +++..++.+++|+.|++++|++++.+|..+.++++|++||+++|+++++|+. +..++ .|+.
T Consensus       488 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~-~~~l~~~L~~  549 (606)
T 3vq2_A          488 ISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI-LQHFPKSLAF  549 (606)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC-GGGSCTTCCE
T ss_pred             cChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHh-HhhhcccCcE
Confidence            8888889999999999999999999888899999999999999999988876 66554 3553

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.94  E-value=6.1e-25  Score=213.18  Aligned_cols=114  Identities=16%  Similarity=0.166  Sum_probs=75.1

Q ss_pred             CCCCCCCCCC---ccCCchhhHhhhhccc-hhhhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCCC
Q psy8550          35 HPGFQNNPKS---NFKSPTEILKSLLIIP-FEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPD  110 (332)
Q Consensus        35 ~~g~~~~p~~---~~~~~~~~~~~l~~iP-~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  110 (332)
                      ..+++.+|..   .++.+++....+..+| ..++.+.+|+.|++++|.++...+                        ..
T Consensus        40 ~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------------------------~~   95 (562)
T 3a79_B           40 NRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF------------------------HV   95 (562)
T ss_dssp             TSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECT------------------------TT
T ss_pred             CCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCH------------------------HH
Confidence            3455566643   3456666666677776 579999999999999998877632                        12


Q ss_pred             CcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccch--hhhcCCCCCcEEEeecCcCc
Q psy8550         111 CDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVD--SAIQFYSSLQHVDLSHNQLV  172 (332)
Q Consensus       111 c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~--~~~~~l~~L~~L~l~~~~l~  172 (332)
                      ......++.++.+++.++.+|..-.++|++|++++|.++.++  ..++++++|++|++++|.+.
T Consensus        96 ~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~  159 (562)
T 3a79_B           96 FLFNQDLEYLDVSHNRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR  159 (562)
T ss_dssp             TTTCTTCCEEECTTSCCCEECSCCCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred             hCCCCCCCEEECCCCcCCccCccccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccc
Confidence            223344556777777777777664467777777777776543  46666777766666666554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.93  E-value=5.7e-26  Score=208.64  Aligned_cols=190  Identities=27%  Similarity=0.407  Sum_probs=171.4

Q ss_pred             hcCCCCCCCCCcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhc-CCCCCcEEEeecCcCcccCCCC
Q psy8550         101 HQASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQ-FYSSLQHVDLSHNQLVNIPIRG  178 (332)
Q Consensus       101 ~~~~~~~p~~c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~-~l~~L~~L~l~~~~l~~~~~~~  178 (332)
                      ......||..|.|...  .++|.++.++.+|..++..++.|++++|.++.++. .+. .+++|++|++++|+++.+++..
T Consensus         6 ~~~~~~Cp~~C~C~~~--~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~   83 (361)
T 2xot_A            6 GRSVVSCPANCLCASN--ILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEA   83 (361)
T ss_dssp             -CCCTTCCTTCEEETT--EEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTT
T ss_pred             CCcCCCCCCCCEECCC--EEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhh
Confidence            3556779999999754  79999999999999999999999999999998887 455 8999999999999999999889


Q ss_pred             CCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhc---CCCC
Q psy8550         179 FEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACF---EGLT  255 (332)
Q Consensus       179 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~  255 (332)
                      |..+++|++|++++|+++.+++..|.++++|++|+|++|.++.+++..|..+++|+.|++++|.++.+++..+   ..++
T Consensus        84 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~  163 (361)
T 2xot_A           84 FVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLP  163 (361)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CT
T ss_pred             ccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCC
Confidence            9999999999999999999988899999999999999999999988889999999999999999999988776   5689


Q ss_pred             CCcEEeCCCCCCCCcCcccccCCCC--ccEEEcCCCcCC
Q psy8550         256 ALRILYLDDNQLRSVPTPSFIYLGM--LAELRVGLNVFT  292 (332)
Q Consensus       256 ~L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~L~~n~l~  292 (332)
                      +|+.|++++|.++.++...+..++.  ++.|++++|++.
T Consensus       164 ~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          164 KLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             TCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             cCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            9999999999999999878888876  488999999886

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=1e-25  Score=220.25  Aligned_cols=252  Identities=19%  Similarity=0.218  Sum_probs=179.5

Q ss_pred             CCchhhHhhhhccchh-hhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCcccCCCceEEecCC
Q psy8550          47 KSPTEILKSLLIIPFE-VRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKEA  125 (332)
Q Consensus        47 ~~~~~~~~~l~~iP~~-~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~c~c~~~~~~~~c~~~  125 (332)
                      ..+......+..+|+. ++.+.+|+.|++++|.+....+                        ........+..++..++
T Consensus        54 ~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~------------------------~~~~~l~~L~~L~L~~n  109 (597)
T 3oja_B           54 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT------------------------YAFAYAHTIQKLYMGFN  109 (597)
T ss_dssp             SEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECT------------------------TTTTTCTTCCEEECCSS
T ss_pred             eEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCCh------------------------HHhcCCCCCCEEECCCC
Confidence            3333444455777776 6888999999998887776532                        12233345667888888


Q ss_pred             CccccCCCC---CCCccEEEeecCCCccchhh-hcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCcc
Q psy8550         126 NLDVIPITL---NPSIQRLVLKYNRIKTVDSA-IQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNK  201 (332)
Q Consensus       126 ~l~~lp~~~---~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  201 (332)
                      .+..+|...   .++|++|++++|.++.+|+. ++++++|++|++++|.+..+++..|+.+++|++|++++|.+++++..
T Consensus       110 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  189 (597)
T 3oja_B          110 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS  189 (597)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGG
T ss_pred             cCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChh
Confidence            888777543   27888888888888888774 57888888888888888888878888888888888888888776544


Q ss_pred             ccCCC-------------------------------------CCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCc
Q psy8550         202 TFIGL-------------------------------------KSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRIS  244 (332)
Q Consensus       202 ~~~~l-------------------------------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  244 (332)
                      .+.++                                     ++|+.|++++|.++..  ..+..+++|+.|++++|.++
T Consensus       190 ~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~  267 (597)
T 3oja_B          190 LIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELE  267 (597)
T ss_dssp             GCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred             hhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccC
Confidence            33322                                     2344455555555443  22566778888888888888


Q ss_pred             ccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCccccccc
Q psy8550         245 RIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMA  324 (332)
Q Consensus       245 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~  324 (332)
                      ++.+..++.+++|+.|++++|.+++++. .++.+++|+.|++++|.++++++ .+..+++|+.|++++|++++++...+.
T Consensus       268 ~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~Ls~N~l~~i~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~  345 (597)
T 3oja_B          268 KIMYHPFVKMQRLERLYISNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVER-NQPQFDRLENLYLDHNSIVTLKLSTHH  345 (597)
T ss_dssp             EEESGGGTTCSSCCEEECTTSCCCEEEC-SSSCCTTCCEEECCSSCCCCCGG-GHHHHTTCSEEECCSSCCCCCCCCTTC
T ss_pred             CCCHHHhcCccCCCEEECCCCCCCCCCc-ccccCCCCcEEECCCCCCCccCc-ccccCCCCCEEECCCCCCCCcChhhcC
Confidence            7777778888888888888888887755 45667788888888888886654 567778888888888888877644444


Q ss_pred             CC
Q psy8550         325 LG  326 (332)
Q Consensus       325 ~l  326 (332)
                      .+
T Consensus       346 ~L  347 (597)
T 3oja_B          346 TL  347 (597)
T ss_dssp             CC
T ss_pred             CC
Confidence            33

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.93  E-value=4.1e-25  Score=201.41  Aligned_cols=269  Identities=20%  Similarity=0.205  Sum_probs=190.8

Q ss_pred             ccCCchhhHhhhhccchhhhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCcccCCCceEEecC
Q psy8550          45 NFKSPTEILKSLLIIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKE  124 (332)
Q Consensus        45 ~~~~~~~~~~~l~~iP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~c~c~~~~~~~~c~~  124 (332)
                      .++.+......+..+|. ++.+.+|+.|++++|.+........  +.. +..+..........+. ......+..+++.+
T Consensus        67 ~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~--l~~-L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~  141 (347)
T 4fmz_A           67 NLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQN--LTN-LRELYLNEDNISDISP-LANLTKMYSLNLGA  141 (347)
T ss_dssp             TCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTT--CTT-CSEEECTTSCCCCCGG-GTTCTTCCEEECTT
T ss_pred             CccEEEccCCccccchh-hhcCCcCCEEEccCCcccCchHHcC--CCc-CCEEECcCCcccCchh-hccCCceeEEECCC
Confidence            34555555566677777 8888888888888887766531100  000 0000000011111111 11223344555555


Q ss_pred             CCccccCCCCC--CCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccc
Q psy8550         125 ANLDVIPITLN--PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKT  202 (332)
Q Consensus       125 ~~l~~lp~~~~--~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  202 (332)
                      +.....+..+.  +++++|++++|.+..++. +..+++|++|++++|.+..+++  +..+++|+.|++++|.+.+..+  
T Consensus       142 n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--  216 (347)
T 4fmz_A          142 NHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--  216 (347)
T ss_dssp             CTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--
T ss_pred             CCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--
Confidence            53222121122  677777777777776665 6777888888888887777654  6777888888888888877755  


Q ss_pred             cCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCcc
Q psy8550         203 FIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLA  282 (332)
Q Consensus       203 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  282 (332)
                      +..+++|++|++++|.++.+++  +..+++|++|++++|.++.+  ..+..+++|+.|++++|.+++++  .+..+++|+
T Consensus       217 ~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~  290 (347)
T 4fmz_A          217 VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDIS--VLNNLSQLN  290 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCS
T ss_pred             hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCCh--hhcCCCCCC
Confidence            7788899999999999988877  68889999999999998887  34788899999999999999874  578899999


Q ss_pred             EEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCccc
Q psy8550         283 ELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHW  331 (332)
Q Consensus       283 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~  331 (332)
                      .|++++|++++..+..++++++|+.|++++|+++++++  ++.++.|+.
T Consensus       291 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~  337 (347)
T 4fmz_A          291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDS  337 (347)
T ss_dssp             EEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSE
T ss_pred             EEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccce
Confidence            99999999999998889999999999999999999887  666777654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.93  E-value=8e-26  Score=218.44  Aligned_cols=200  Identities=28%  Similarity=0.359  Sum_probs=183.0

Q ss_pred             EEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCccccc
Q psy8550         120 VTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSV  198 (332)
Q Consensus       120 ~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  198 (332)
                      ++|+++.++.+|.++++++++|++++|.++.+++ .+.++++|++|++++|.+..+++.+|+.+++|++|++++|.++++
T Consensus        10 c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~   89 (549)
T 2z81_A           10 CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL   89 (549)
T ss_dssp             EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC
T ss_pred             EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc
Confidence            4778899999999999999999999999998754 899999999999999999999999999999999999999999999


Q ss_pred             CccccCCCCCCCEEEccCCCCCCCC-ccccCCCCCCcEeeccCCC-CcccChhhcCCCCCCcEEeCCCCCCCCcCccccc
Q psy8550         199 NNKTFIGLKSLKVLNLRGNFLEDLP-DRLFAPLSHLEELDLGQNR-ISRIDQACFEGLTALRILYLDDNQLRSVPTPSFI  276 (332)
Q Consensus       199 ~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  276 (332)
                      ++..|+++++|++|++++|.++.++ +..++.+++|++|++++|. +..+++..+.++++|++|++++|.+++..+..++
T Consensus        90 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~  169 (549)
T 2z81_A           90 SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK  169 (549)
T ss_dssp             CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred             CHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhh
Confidence            8888999999999999999999753 3457999999999999998 6778777899999999999999999998888999


Q ss_pred             CCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcc
Q psy8550         277 YLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMM  319 (332)
Q Consensus       277 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~  319 (332)
                      .+++|+.|++++|.+...++..+..+++|++|++++|++++++
T Consensus       170 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  212 (549)
T 2z81_A          170 SIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQ  212 (549)
T ss_dssp             TCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCC
T ss_pred             ccccCceEecccCcccccchhhHhhcccccEEEccCCcccccc
Confidence            9999999999999998877766678999999999999998863

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.93  E-value=3.7e-25  Score=197.14  Aligned_cols=189  Identities=25%  Similarity=0.335  Sum_probs=173.4

Q ss_pred             CCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEcc
Q psy8550         136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLR  215 (332)
Q Consensus       136 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  215 (332)
                      +++++++++++.++.+|..+.  +++++|++++|.+..+.+..|..+++|++|++++|.++++++.  ..+++|++|+++
T Consensus        10 ~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls   85 (290)
T 1p9a_G           10 ASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLS   85 (290)
T ss_dssp             TTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECC
T ss_pred             CCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECC
Confidence            578999999999999997654  7899999999999999888999999999999999999998653  789999999999


Q ss_pred             CCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccC
Q psy8550         216 GNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA  295 (332)
Q Consensus       216 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  295 (332)
                      +|.++.+|.. +..+++|++|++++|+++.+++..|..+++|++|++++|+++++++..|..+++|+.|++++|++++++
T Consensus        86 ~N~l~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~  164 (290)
T 1p9a_G           86 HNQLQSLPLL-GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP  164 (290)
T ss_dssp             SSCCSSCCCC-TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred             CCcCCcCchh-hccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccC
Confidence            9999999875 588999999999999999998888999999999999999999999988999999999999999999999


Q ss_pred             chhcCCCCCCCEEEccCCCCCCcccccccCCCCcc
Q psy8550         296 DGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLH  330 (332)
Q Consensus       296 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~  330 (332)
                      +..|.++++|+.|++++|+++.+|+..+.. ..|+
T Consensus       165 ~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~-~~L~  198 (290)
T 1p9a_G          165 AGLLNGLENLDTLLLQENSLYTIPKGFFGS-HLLP  198 (290)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CCCS
T ss_pred             HHHhcCcCCCCEEECCCCcCCccChhhccc-ccCC
Confidence            988999999999999999999998876654 3443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.93  E-value=5.2e-25  Score=204.08  Aligned_cols=194  Identities=20%  Similarity=0.282  Sum_probs=102.4

Q ss_pred             CCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEc
Q psy8550         136 PSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNL  214 (332)
Q Consensus       136 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  214 (332)
                      .+++.|+++++.++.+|+ .+..+++|++|++++|.+..+++..|..+++|++|++++|.+++++|..|+++++|++|++
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  124 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  124 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence            445555555555555544 2444555555555555555555445555555555555555555554444555555555555


Q ss_pred             cCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCc----------------------
Q psy8550         215 RGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPT----------------------  272 (332)
Q Consensus       215 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----------------------  272 (332)
                      ++|.++.+|+..|+.+++|++|++++|.++.+.+..+..+++|++|++++|.+++++.                      
T Consensus       125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~  204 (390)
T 3o6n_A          125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIP  204 (390)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECC
T ss_pred             CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCC
Confidence            5555555555444455555555555555555544444555555555555554443321                      


Q ss_pred             -------------------------------------ccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCC
Q psy8550         273 -------------------------------------PSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGL  315 (332)
Q Consensus       273 -------------------------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  315 (332)
                                                           ..++.+++|+.|++++|.+++..+..+.++++|+.|++++|++
T Consensus       205 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  284 (390)
T 3o6n_A          205 IAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL  284 (390)
T ss_dssp             SSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCC
T ss_pred             CcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcC
Confidence                                                 1244455666666666666666566666666666666666666


Q ss_pred             CCcccccccCCCCcc
Q psy8550         316 TNMMGHSMALGDYLH  330 (332)
Q Consensus       316 ~~l~~~~~~~l~~L~  330 (332)
                      ++++. .+..++.|+
T Consensus       285 ~~~~~-~~~~l~~L~  298 (390)
T 3o6n_A          285 VALNL-YGQPIPTLK  298 (390)
T ss_dssp             CEEEC-SSSCCTTCC
T ss_pred             cccCc-ccCCCCCCC
Confidence            66543 234444444

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.93  E-value=2.5e-25  Score=215.94  Aligned_cols=137  Identities=27%  Similarity=0.359  Sum_probs=116.0

Q ss_pred             CCCCCCcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCCCC
Q psy8550         106 FCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEK  184 (332)
Q Consensus       106 ~~p~~c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~  184 (332)
                      .++..|.|... ..++|.++.++.+|.++++++++|++++|.++.+++ .+.++++|++|++++|.++.+.+..|..+++
T Consensus        23 ~~~~~~~~~~~-~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  101 (562)
T 3a79_B           23 GSMTPFSNELE-SMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQD  101 (562)
T ss_dssp             ----------C-CEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTT
T ss_pred             ccccccccCCC-cEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCC
Confidence            35555666654 689999999999999999999999999999998875 8999999999999999999999899999999


Q ss_pred             CcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCC-ccccCCCCCCcEeeccCCCCccc
Q psy8550         185 LVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLP-DRLFAPLSHLEELDLGQNRISRI  246 (332)
Q Consensus       185 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~  246 (332)
                      |++|++++|.++.+++.   .+++|++|++++|.++.++ +..|+.+++|++|++++|.++..
T Consensus       102 L~~L~Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~  161 (562)
T 3a79_B          102 LEYLDVSHNRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL  161 (562)
T ss_dssp             CCEEECTTSCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT
T ss_pred             CCEEECCCCcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC
Confidence            99999999999988554   7899999999999999876 45678999999999999987653

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.93  E-value=8.5e-25  Score=192.97  Aligned_cols=203  Identities=27%  Similarity=0.344  Sum_probs=130.3

Q ss_pred             CCceEEecCCCccccCC-CCCCCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCc
Q psy8550         116 ETLVVTCKEANLDVIPI-TLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK  194 (332)
Q Consensus       116 ~~~~~~c~~~~l~~lp~-~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~  194 (332)
                      ....+.+.++.+..++. ...+++++|++++|.++.++ .+..+++|++|++++|.++.+++..|..+++|++|++++|+
T Consensus        42 ~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  120 (272)
T 3rfs_A           42 SIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ  120 (272)
T ss_dssp             TCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             ceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCc
Confidence            34456666666655542 11266667777766666653 56666667777777776666666666666677777777776


Q ss_pred             ccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCccc
Q psy8550         195 LSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPS  274 (332)
Q Consensus       195 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  274 (332)
                      ++++++..|.++++|++|++++|.++.+++..++.+++|+.|++++|.++.+++..++.+++|++|++++|.++++++..
T Consensus       121 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  200 (272)
T 3rfs_A          121 LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGV  200 (272)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred             CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHH
Confidence            66666666666667777777777666666666666666777777777666666665666666777777777766666656


Q ss_pred             ccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCC
Q psy8550         275 FIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALG  326 (332)
Q Consensus       275 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l  326 (332)
                      ++.+++|+.|++++|++.+.       +++++.|++.+|++++..|..++.+
T Consensus       201 ~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~  245 (272)
T 3rfs_A          201 FDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSV  245 (272)
T ss_dssp             TTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred             HhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccccc
Confidence            66666677777776665533       3356666666666666555555443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=5.8e-25  Score=194.29  Aligned_cols=203  Identities=26%  Similarity=0.290  Sum_probs=182.1

Q ss_pred             CCCceEEecCCCccccCC-CCC--CCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEc
Q psy8550         115 DETLVVTCKEANLDVIPI-TLN--PSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQL  190 (332)
Q Consensus       115 ~~~~~~~c~~~~l~~lp~-~~~--~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l  190 (332)
                      ...+.++..++.+..++. .+.  +++++|++++|.++.+++ .+.++++|++|++++|.+..+++..|..+++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            346689999999998886 333  799999999999998877 7899999999999999999999899999999999999


Q ss_pred             CCCcccccCccccCCCCCCCEEEccCCCCCCCC-ccccCCCCCCcEeeccCCCCcccChhhcCCCCCCc----EEeCCCC
Q psy8550         191 NHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLP-DRLFAPLSHLEELDLGQNRISRIDQACFEGLTALR----ILYLDDN  265 (332)
Q Consensus       191 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~----~L~L~~n  265 (332)
                      ++|.+.++.+..+.++++|++|++++|.++.+. +..++.+++|++|++++|.++.+++..+..+++|+    .|++++|
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n  187 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence            999999998888999999999999999999854 55678999999999999999999887777666666    8999999


Q ss_pred             CCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCc
Q psy8550         266 QLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNM  318 (332)
Q Consensus       266 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l  318 (332)
                      .++++++..+.. .+|+.|++++|.++++++..+.++++|+.|++++|.+++-
T Consensus       188 ~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  239 (276)
T 2z62_A          188 PMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  239 (276)
T ss_dssp             CCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred             cccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence            999998866654 4899999999999999998899999999999999999864

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.93  E-value=8e-26  Score=206.88  Aligned_cols=245  Identities=18%  Similarity=0.205  Sum_probs=187.4

Q ss_pred             hhhHhhhhccchhhhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCcccCCCceEEecCCCccc
Q psy8550          50 TEILKSLLIIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKEANLDV  129 (332)
Q Consensus        50 ~~~~~~l~~iP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~c~c~~~~~~~~c~~~~l~~  129 (332)
                      +.....++.+|..+.  .+|+.|+++++.+....+                        ........++.++..++.+..
T Consensus        37 ~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~------------------------~~~~~l~~L~~L~L~~n~l~~   90 (353)
T 2z80_A           37 KGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISN------------------------SDLQRCVNLQALVLTSNGINT   90 (353)
T ss_dssp             ECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECT------------------------TTTTTCTTCCEEECTTSCCCE
T ss_pred             eCCCCCccccccccc--ccCcEEECCCCcCcccCH------------------------HHhccCCCCCEEECCCCccCc
Confidence            334455677777665  377777777777665432                        111223445677888887777


Q ss_pred             cCCC-CC--CCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCC-CCCCCCCCCcEEEcCCC-cccccCcccc
Q psy8550         130 IPIT-LN--PSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPI-RGFEPQEKLVELQLNHN-KLSSVNNKTF  203 (332)
Q Consensus       130 lp~~-~~--~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~  203 (332)
                      ++.. +.  +++++|++++|.++.++. .+.++++|++|++++|.+..++. ..|..+++|++|++++| .+..+.+..|
T Consensus        91 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  170 (353)
T 2z80_A           91 IEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF  170 (353)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT
T ss_pred             cCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHc
Confidence            6543 33  678888888888888777 47888888888888888888776 57888888888888887 5777777788


Q ss_pred             CCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCc-----------
Q psy8550         204 IGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPT-----------  272 (332)
Q Consensus       204 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----------  272 (332)
                      .++++|++|++++|.++.+++..++.+++|++|++++|.+..++...+..+++|+.|++++|.+++++.           
T Consensus       171 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~  250 (353)
T 2z80_A          171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSL  250 (353)
T ss_dssp             TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCC
T ss_pred             cCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccch
Confidence            888888888888888888777777888888888888888877766555567888888888888876542           


Q ss_pred             --------------------ccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCccc
Q psy8550         273 --------------------PSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMG  320 (332)
Q Consensus       273 --------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~  320 (332)
                                          ..++.+++|+.|++++|+++++++..|+++++|++|++++|.+.+..+
T Consensus       251 l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          251 IKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             hhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence                                245678999999999999999888778999999999999999987654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.93  E-value=6.5e-25  Score=210.84  Aligned_cols=126  Identities=16%  Similarity=0.163  Sum_probs=72.8

Q ss_pred             CCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccC--hhhcCCCCCCcEEeCCCCCCCC-cCcccccCC---
Q psy8550         205 GLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID--QACFEGLTALRILYLDDNQLRS-VPTPSFIYL---  278 (332)
Q Consensus       205 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l---  278 (332)
                      .+++|++|++++|.+++..+..++.+++|+.|++++|.+++++  +..+..+++|++|++++|.+++ ++...+..+   
T Consensus       322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L  401 (520)
T 2z7x_B          322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL  401 (520)
T ss_dssp             SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred             hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence            4455555555555555533333455555555555555555432  2335555555555555555554 443333333   


Q ss_pred             -------------------CCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCccc
Q psy8550         279 -------------------GMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHW  331 (332)
Q Consensus       279 -------------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~  331 (332)
                                         ++|+.|++++|+++.+++ .+..+++|+.|++++|+++++++..|..++.|+.
T Consensus       402 ~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~  472 (520)
T 2z7x_B          402 LSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPK-QVVKLEALQELNVASNQLKSVPDGIFDRLTSLQK  472 (520)
T ss_dssp             CEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CEEECcCCCCCcchhhhhcccCCEEECCCCcccccch-hhhcCCCCCEEECCCCcCCccCHHHhccCCcccE
Confidence                               456666666666665444 3447778888888888888877777777777664

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=2.8e-25  Score=199.98  Aligned_cols=248  Identities=16%  Similarity=0.147  Sum_probs=191.9

Q ss_pred             cCCchhhHhhhhccchhhhhhhhhhhhhcCccccchhh-hhHHHHHHHHHHHHHHhhcCCCCCCCCCcccCCCceEEecC
Q psy8550          46 FKSPTEILKSLLIIPFEVRILNKLRIFINDSVLFSSVS-DITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKE  124 (332)
Q Consensus        46 ~~~~~~~~~~l~~iP~~~~~l~~L~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~c~c~~~~~~~~c~~  124 (332)
                      +..+.+....+ .+|..+...  |+.|+++++.+.... +...... ... .               .....++.++..+
T Consensus        45 L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~-~~~-~---------------~~l~~L~~L~L~~  104 (312)
T 1wwl_A           45 LEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFG-ALR-V---------------LGISGLQELTLEN  104 (312)
T ss_dssp             CTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHH-HHH-H---------------HTTSCCCEEEEEE
T ss_pred             ceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHH-HHH-h---------------cCcCCccEEEccC
Confidence            34444555555 778887766  888899988885432 2111100 000 0               1123566788888


Q ss_pred             CCcc-ccCCCC----CCCccEEEeecCCCccchhhhcCC-----CCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCc
Q psy8550         125 ANLD-VIPITL----NPSIQRLVLKYNRIKTVDSAIQFY-----SSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK  194 (332)
Q Consensus       125 ~~l~-~lp~~~----~~~L~~L~l~~~~l~~l~~~~~~l-----~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~  194 (332)
                      +.+. .+|..+    .+++++|++++|.++.+|..++.+     ++|++|++++|++..+++..|+.+++|++|++++|+
T Consensus       105 n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~  184 (312)
T 1wwl_A          105 LEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP  184 (312)
T ss_dssp             EBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCT
T ss_pred             CcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCC
Confidence            8887 677754    389999999999999887777776     899999999999999998999999999999999999


Q ss_pred             cccc--Cccc--cCCCCCCCEEEccCCCCCCCC---ccccCCCCCCcEeeccCCCCcccCh-hhcCCCCCCcEEeCCCCC
Q psy8550         195 LSSV--NNKT--FIGLKSLKVLNLRGNFLEDLP---DRLFAPLSHLEELDLGQNRISRIDQ-ACFEGLTALRILYLDDNQ  266 (332)
Q Consensus       195 l~~~--~~~~--~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~  266 (332)
                      +.+.  .+..  +.++++|++|++++|.++.++   ...+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.
T Consensus       185 l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~  264 (312)
T 1wwl_A          185 ELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG  264 (312)
T ss_dssp             TCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC
T ss_pred             cCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc
Confidence            7653  1223  388999999999999998543   4455678999999999999998764 456678999999999999


Q ss_pred             CCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCc
Q psy8550         267 LRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNM  318 (332)
Q Consensus       267 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l  318 (332)
                      ++.+|. .+.  ++|+.|++++|++++.+.  +..+++|++|++++|++++.
T Consensus       265 l~~ip~-~~~--~~L~~L~Ls~N~l~~~p~--~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          265 LKQVPK-GLP--AKLSVLDLSYNRLDRNPS--PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             CSSCCS-SCC--SEEEEEECCSSCCCSCCC--TTTSCEEEEEECTTCTTTCC
T ss_pred             cChhhh-hcc--CCceEEECCCCCCCCChh--HhhCCCCCEEeccCCCCCCC
Confidence            998876 343  799999999999999843  88999999999999999864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.93  E-value=9.6e-26  Score=227.22  Aligned_cols=162  Identities=19%  Similarity=0.226  Sum_probs=134.2

Q ss_pred             CCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCC-------CCCCEEEccCCCCCCCCcccc-CCC
Q psy8550         159 SSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGL-------KSLKVLNLRGNFLEDLPDRLF-APL  230 (332)
Q Consensus       159 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-------~~L~~L~L~~n~l~~~~~~~~-~~l  230 (332)
                      .+|++|++++|.+..++...+..+++|+.|++++|+++.+++..+...       ++|+.|+|++|.++.+|...+ ..+
T Consensus       673 ~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l  752 (876)
T 4ecn_A          673 INASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTL  752 (876)
T ss_dssp             CCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTC
T ss_pred             CCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccC
Confidence            367777777777776665555678999999999999998866555543       399999999999999987753 389


Q ss_pred             CCCcEeeccCCCCcccChhhcCCCCCCcEEeCCC------CCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCC
Q psy8550         231 SHLEELDLGQNRISRIDQACFEGLTALRILYLDD------NQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGR  304 (332)
Q Consensus       231 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  304 (332)
                      ++|+.|++++|.++.+ |..+..+++|+.|++++      |.+.+..+..++.+++|+.|++++|++..++. .+.  ++
T Consensus       753 ~~L~~L~Ls~N~L~~l-p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~-~l~--~~  828 (876)
T 4ecn_A          753 PYLSNMDVSYNCFSSF-PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDE-KLT--PQ  828 (876)
T ss_dssp             TTCCEEECCSSCCSSC-CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCS-CCC--SS
T ss_pred             CCcCEEEeCCCCCCcc-chhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCH-hhc--CC
Confidence            9999999999999997 55678899999999976      77777777789999999999999999965555 444  69


Q ss_pred             CCEEEccCCCCCCccccccc
Q psy8550         305 LSALDLRGAGLTNMMGHSMA  324 (332)
Q Consensus       305 L~~L~Ls~n~l~~l~~~~~~  324 (332)
                      |+.|||++|++..+.+..|.
T Consensus       829 L~~LdLs~N~l~~i~~~~~~  848 (876)
T 4ecn_A          829 LYILDIADNPNISIDVTSVC  848 (876)
T ss_dssp             SCEEECCSCTTCEEECGGGH
T ss_pred             CCEEECCCCCCCccChHHcc
Confidence            99999999999998876654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.93  E-value=7.1e-25  Score=193.47  Aligned_cols=182  Identities=32%  Similarity=0.444  Sum_probs=170.2

Q ss_pred             CCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEcc
Q psy8550         136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLR  215 (332)
Q Consensus       136 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  215 (332)
                      ++++.|+++++.++.++ .+..+++|++|++++|.+..++  .+..+++|++|++++|.++++++..|.++++|++|+++
T Consensus        41 ~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  117 (272)
T 3rfs_A           41 NSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV  117 (272)
T ss_dssp             TTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             cceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence            68999999999999876 4888999999999999999864  78899999999999999999988889999999999999


Q ss_pred             CCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccC
Q psy8550         216 GNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA  295 (332)
Q Consensus       216 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  295 (332)
                      +|.++.+++..++.+++|++|++++|.++.+++..++.+++|+.|++++|.++++++..++.+++|+.|++++|++++++
T Consensus       118 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  197 (272)
T 3rfs_A          118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP  197 (272)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC
Confidence            99999999988899999999999999999998888899999999999999999999988899999999999999999999


Q ss_pred             chhcCCCCCCCEEEccCCCCCCccc
Q psy8550         296 DGAFNGLGRLSALDLRGAGLTNMMG  320 (332)
Q Consensus       296 ~~~~~~l~~L~~L~Ls~n~l~~l~~  320 (332)
                      +..+.++++|+.|++++|.+.+..+
T Consensus       198 ~~~~~~l~~L~~L~l~~N~~~~~~~  222 (272)
T 3rfs_A          198 DGVFDRLTSLQYIWLHDNPWDCTCP  222 (272)
T ss_dssp             TTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             HHHHhCCcCCCEEEccCCCccccCc
Confidence            9889999999999999999876543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.93  E-value=1.1e-24  Score=186.32  Aligned_cols=163  Identities=31%  Similarity=0.519  Sum_probs=131.1

Q ss_pred             CCCCCCCCcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCC
Q psy8550         104 SAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQ  182 (332)
Q Consensus       104 ~~~~p~~c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l  182 (332)
                      ...||..|.|...  .++|.++.++.+|..++++++.|++++|.++.+++ .+..+++|++|++++|.++.+.+..|.++
T Consensus         2 ~~~CP~~C~C~~~--~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l   79 (220)
T 2v9t_B            2 SLHCPAACTCSNN--IVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL   79 (220)
T ss_dssp             CCCSCTTSEEETT--EEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             CCCCCCCCEECCC--EEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCC
Confidence            3579999999854  79999999999999888889999999888887776 67778888888888888888877778888


Q ss_pred             CCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeC
Q psy8550         183 EKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYL  262 (332)
Q Consensus       183 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  262 (332)
                      ++|++|++++|.++.+++..|.++++|++|+|++|.++.+++..|..+++|+.|++++|.++.+++..+..+++|+.|++
T Consensus        80 ~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  159 (220)
T 2v9t_B           80 RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHL  159 (220)
T ss_dssp             SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEe
Confidence            88888888888888777777777778888888888777777777777777777777777777777666777777777777


Q ss_pred             CCCCCC
Q psy8550         263 DDNQLR  268 (332)
Q Consensus       263 ~~n~l~  268 (332)
                      ++|.+.
T Consensus       160 ~~N~~~  165 (220)
T 2v9t_B          160 AQNPFI  165 (220)
T ss_dssp             CSSCEE
T ss_pred             CCCCcC
Confidence            777664

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.93  E-value=1.2e-24  Score=213.11  Aligned_cols=105  Identities=25%  Similarity=0.282  Sum_probs=85.4

Q ss_pred             cCCCCCCcEeeccCCCC-cccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCC
Q psy8550         227 FAPLSHLEELDLGQNRI-SRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRL  305 (332)
Q Consensus       227 ~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  305 (332)
                      +..++.++.|++++|.+ ..+.+..+..+++|+.|++++|+++++++..|+.+++|+.|+|++|+++++++.+|.++++|
T Consensus       465 ~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L  544 (635)
T 4g8a_A          465 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL  544 (635)
T ss_dssp             TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTC
T ss_pred             cccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCC
Confidence            34445566666666653 33456668888899999999999999988889999999999999999999999889999999


Q ss_pred             CEEEccCCCCCCcccccccCC-CCccc
Q psy8550         306 SALDLRGAGLTNMMGHSMALG-DYLHW  331 (332)
Q Consensus       306 ~~L~Ls~n~l~~l~~~~~~~l-~~L~~  331 (332)
                      ++||+++|+++++++..|..+ ..|+.
T Consensus       545 ~~L~Ls~N~l~~~~~~~l~~l~~~L~~  571 (635)
T 4g8a_A          545 QVLDYSLNHIMTSKKQELQHFPSSLAF  571 (635)
T ss_dssp             CEEECTTSCCCBCCSSCTTCCCTTCCE
T ss_pred             CEEECCCCcCCCCCHHHHHhhhCcCCE
Confidence            999999999999999888876 45654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=2.3e-24  Score=210.64  Aligned_cols=193  Identities=24%  Similarity=0.313  Sum_probs=99.3

Q ss_pred             CCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEc
Q psy8550         136 PSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNL  214 (332)
Q Consensus       136 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  214 (332)
                      ++|+.|++++|.++.+++ .++.+++|++|++++|.+..+++..|+.+++|++|++++|.++.+++..|+++++|++|++
T Consensus        75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  154 (597)
T 3oja_B           75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM  154 (597)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence            345555555555544433 4445555555555555555554444455555555555555555444444445555555555


Q ss_pred             cCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCC-------------------------------------CCC
Q psy8550         215 RGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGL-------------------------------------TAL  257 (332)
Q Consensus       215 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-------------------------------------~~L  257 (332)
                      ++|.++.+++..|+.+++|+.|++++|.++.++...+..+                                     ++|
T Consensus       155 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L  234 (597)
T 3oja_B          155 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVEL  234 (597)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCC
T ss_pred             eCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCC
Confidence            5555555444444445555555555554444432222111                                     012


Q ss_pred             cEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCccc
Q psy8550         258 RILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHW  331 (332)
Q Consensus       258 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~  331 (332)
                      +.|++++|.+++.  ..++.+++|+.|++++|.+++.+|..|+++++|+.|+|++|++++++. .+..++.|+.
T Consensus       235 ~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~  305 (597)
T 3oja_B          235 TILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL-YGQPIPTLKV  305 (597)
T ss_dssp             CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEEC-SSSCCTTCCE
T ss_pred             CEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCc-ccccCCCCcE
Confidence            2222223333222  235566677777777777777766677777777777777777777644 3344555543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.92  E-value=1.3e-24  Score=220.37  Aligned_cols=156  Identities=28%  Similarity=0.386  Sum_probs=111.4

Q ss_pred             CcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccch-hhhcCCCCCcEEEeecC-cCcccCCCCCCCCCCCcEE
Q psy8550         111 CDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVD-SAIQFYSSLQHVDLSHN-QLVNIPIRGFEPQEKLVEL  188 (332)
Q Consensus       111 c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~-~l~~~~~~~~~~l~~L~~L  188 (332)
                      |.|..  ..++|.+..++.+|. +++++++|++++|.++.++ ..+.++++|++|++++| .+..+++.+|.++++|++|
T Consensus         2 C~~~~--~~~dcs~~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L   78 (844)
T 3j0a_A            2 CSFDG--RIAFYRFCNLTQVPQ-VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRIL   78 (844)
T ss_dssp             CBTTT--EEEEESCCCSSCCCS-SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEE
T ss_pred             ceEec--eEEEccCCCCCCCCC-CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEE
Confidence            55543  479999999999998 8899999999999998764 37777888888888877 4455666777777777777


Q ss_pred             EcCCCcccccCccccCCCCCCCEEEccCCCCCCC-C-ccccCCCCCCcEeeccCCCCcccCh-hhcCCCCCCcEEeCCCC
Q psy8550         189 QLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDL-P-DRLFAPLSHLEELDLGQNRISRIDQ-ACFEGLTALRILYLDDN  265 (332)
Q Consensus       189 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n  265 (332)
                      ++++|.+.++.|.+|.++++|++|+|++|.+++. + ...++.+++|++|++++|.++.+.+ ..|+++++|++|++++|
T Consensus        79 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N  158 (844)
T 3j0a_A           79 DLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN  158 (844)
T ss_dssp             ECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred             ECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence            7777777777777777777777777777777652 2 2235666677777777776665533 34566666666666665


Q ss_pred             CCCC
Q psy8550         266 QLRS  269 (332)
Q Consensus       266 ~l~~  269 (332)
                      .+++
T Consensus       159 ~i~~  162 (844)
T 3j0a_A          159 QIFL  162 (844)
T ss_dssp             CCCC
T ss_pred             cCCe
Confidence            5543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.92  E-value=3.4e-25  Score=214.79  Aligned_cols=234  Identities=23%  Similarity=0.231  Sum_probs=122.5

Q ss_pred             hccchhhhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCcccCCCceEEecCCCccccCCCCCC
Q psy8550          57 LIIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKEANLDVIPITLNP  136 (332)
Q Consensus        57 ~~iP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~c~c~~~~~~~~c~~~~l~~lp~~~~~  136 (332)
                      ..+|..++.+.+|+.+.++++.+...+.                         ..... .+..+...++.+..+|....+
T Consensus       272 ~~~~~~~~~l~~L~~L~l~~~~l~~l~~-------------------------~~~~~-~L~~L~l~~n~~~~l~~~~l~  325 (570)
T 2z63_A          272 DDIIDLFNCLTNVSSFSLVSVTIERVKD-------------------------FSYNF-GWQHLELVNCKFGQFPTLKLK  325 (570)
T ss_dssp             SCSTTTTGGGTTCSEEEEESCEECSCCB-------------------------CCSCC-CCSEEEEESCBCSSCCBCBCS
T ss_pred             hhchhhhcCcCcccEEEecCccchhhhh-------------------------hhccC-CccEEeeccCcccccCccccc
Confidence            3466778888888888887776664321                         11111 344555555555555544334


Q ss_pred             ----------------------CccEEEeecCCCccc---hhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcC
Q psy8550         137 ----------------------SIQRLVLKYNRIKTV---DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLN  191 (332)
Q Consensus       137 ----------------------~L~~L~l~~~~l~~l---~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~  191 (332)
                                            ++++|++++|.++.+   +..+..+++|++|++++|.+..+++. +..+++|++|+++
T Consensus       326 ~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~  404 (570)
T 2z63_A          326 SLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQ  404 (570)
T ss_dssp             SCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECT
T ss_pred             ccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEcc
Confidence                                  455555555554433   33445555555555555555544433 4555555555555


Q ss_pred             CCcccccCc-cccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCc-ccChhhcCCCCCCcEEeCCCCCCCC
Q psy8550         192 HNKLSSVNN-KTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRIS-RIDQACFEGLTALRILYLDDNQLRS  269 (332)
Q Consensus       192 ~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~  269 (332)
                      +|.+.+..+ ..+.++++|++|++++|.+...++..+..+++|+.|++++|.++ ...|..+..+++|+.|++++|++++
T Consensus       405 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~  484 (570)
T 2z63_A          405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ  484 (570)
T ss_dssp             TSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred             CCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCcccc
Confidence            555554433 34455555555555555555544444455555555555555554 1223445555555555555555555


Q ss_pred             cCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCC
Q psy8550         270 VPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN  317 (332)
Q Consensus       270 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  317 (332)
                      +++..++.+++|+.|++++|+++++++..+.++++|+.|++++|.+++
T Consensus       485 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~  532 (570)
T 2z63_A          485 LSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  532 (570)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccC
Confidence            544455555555555555555555555455555555555555555543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.92  E-value=1.5e-24  Score=197.69  Aligned_cols=269  Identities=18%  Similarity=0.198  Sum_probs=174.0

Q ss_pred             CCchhhHhhhhccchhhhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCcccCCCceEEecCCC
Q psy8550          47 KSPTEILKSLLIIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKEAN  126 (332)
Q Consensus        47 ~~~~~~~~~l~~iP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~c~c~~~~~~~~c~~~~  126 (332)
                      +.+......+..+|. ++.+.+|+.|++++|.+....+..  .+.. +..+..........| .......++.++..++.
T Consensus        47 ~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~--~l~~-L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~  121 (347)
T 4fmz_A           47 TKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISPLS--NLVK-LTNLYIGTNKITDIS-ALQNLTNLRELYLNEDN  121 (347)
T ss_dssp             SEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGT--TCTT-CCEEECCSSCCCCCG-GGTTCTTCSEEECTTSC
T ss_pred             cEEEEeCCccccchh-hhhcCCccEEEccCCccccchhhh--cCCc-CCEEEccCCcccCch-HHcCCCcCCEEECcCCc
Confidence            344444445566654 889999999999999887764311  0000 000000000111111 11112233445555555


Q ss_pred             ccccCC-CCCCCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCC
Q psy8550         127 LDVIPI-TLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIG  205 (332)
Q Consensus       127 l~~lp~-~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  205 (332)
                      +..+|. .-.++++.|++++|......+.+..+++|++|++++|.+..+++  +..+++|++|++++|.+.++.+  +..
T Consensus       122 i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~  197 (347)
T 4fmz_A          122 ISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LAS  197 (347)
T ss_dssp             CCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGG
T ss_pred             ccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccC
Confidence            444443 11145555555555333222235555666666666666555543  5566667777777776666644  566


Q ss_pred             CCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEE
Q psy8550         206 LKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELR  285 (332)
Q Consensus       206 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  285 (332)
                      +++|+.+++++|.++.+++  +..+++|+.|++++|.++.+++  +..+++|++|++++|.+++++  .+..+++|+.|+
T Consensus       198 l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~  271 (347)
T 4fmz_A          198 LTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDIN--AVKDLTKLKMLN  271 (347)
T ss_dssp             CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEE
T ss_pred             CCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCCh--hHhcCCCcCEEE
Confidence            6777777777777766655  5677888999999998888755  788899999999999988874  578889999999


Q ss_pred             cCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCcccC
Q psy8550         286 VGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHWI  332 (332)
Q Consensus       286 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~l  332 (332)
                      +++|.+++++  .+..+++|+.|++++|++++.++..|+.++.|+.|
T Consensus       272 l~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  316 (347)
T 4fmz_A          272 VGSNQISDIS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL  316 (347)
T ss_dssp             CCSSCCCCCG--GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEE
T ss_pred             ccCCccCCCh--hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEE
Confidence            9999998873  58889999999999999999999999988888753

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.92  E-value=3.6e-24  Score=183.07  Aligned_cols=163  Identities=29%  Similarity=0.489  Sum_probs=141.8

Q ss_pred             CCCCCCCcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh--hhcCCCCCcEEEeecCcCcccCCCCCCCC
Q psy8550         105 AFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS--AIQFYSSLQHVDLSHNQLVNIPIRGFEPQ  182 (332)
Q Consensus       105 ~~~p~~c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l  182 (332)
                      ..||..|.|...  .++|.++.++.+|..++..+++|++++|.++.+++  .+..+++|++|++++|.++.+++..|..+
T Consensus         3 ~~CP~~C~C~~~--~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l   80 (220)
T 2v70_A            3 LACPEKCRCEGT--TVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGA   80 (220)
T ss_dssp             -CCCTTCEEETT--EEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             CCCCCCCEECCC--EeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCC
Confidence            469999999865  79999999999999999999999999999998743  57889999999999999999888888889


Q ss_pred             CCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeC
Q psy8550         183 EKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYL  262 (332)
Q Consensus       183 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  262 (332)
                      ++|++|++++|.++++++..|.++++|++|+|++|.++.+++..|..+++|+.|++++|.++.+.+..|..+++|+.|++
T Consensus        81 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  160 (220)
T 2v70_A           81 SGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNL  160 (220)
T ss_dssp             TTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEe
Confidence            99999999999998888888888888999999988888888777888888888888888888887878888888888888


Q ss_pred             CCCCCCC
Q psy8550         263 DDNQLRS  269 (332)
Q Consensus       263 ~~n~l~~  269 (332)
                      ++|.+..
T Consensus       161 ~~N~l~c  167 (220)
T 2v70_A          161 LANPFNC  167 (220)
T ss_dssp             CSCCEEC
T ss_pred             cCcCCcC
Confidence            8887764

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.92  E-value=4e-24  Score=202.06  Aligned_cols=246  Identities=20%  Similarity=0.239  Sum_probs=112.7

Q ss_pred             ccCCchhhHhhhhccchhhhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCcccCCCceEEecC
Q psy8550          45 NFKSPTEILKSLLIIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKE  124 (332)
Q Consensus        45 ~~~~~~~~~~~l~~iP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~c~c~~~~~~~~c~~  124 (332)
                      .+..+......+..+|+++++|++|+.|++++|.+.+..+..+..+..+.......+          .. .....+++.+
T Consensus        12 ~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c----------~~-~~l~~L~l~~   80 (454)
T 1jl5_A           12 FLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC----------LD-RQAHELELNN   80 (454)
T ss_dssp             ----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHH----------HH-HTCSEEECTT
T ss_pred             cchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhh----------hc-cCCCEEEecC
Confidence            345556666677899999999999999999998887655443332222221111111          00 1123455555


Q ss_pred             CCccccCCCCCCCccEEEeecCCCccchhhh-----------------cCCCCCcEEEeecCcCcccCCCCCCCCCCCcE
Q psy8550         125 ANLDVIPITLNPSIQRLVLKYNRIKTVDSAI-----------------QFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE  187 (332)
Q Consensus       125 ~~l~~lp~~~~~~L~~L~l~~~~l~~l~~~~-----------------~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~  187 (332)
                      +.++.+|. +++++++|++++|.++.+|..+                 ...++|++|++++|.+++++  .|+.+++|++
T Consensus        81 ~~l~~lp~-~~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp--~~~~l~~L~~  157 (454)
T 1jl5_A           81 LGLSSLPE-LPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP--ELQNSSFLKI  157 (454)
T ss_dssp             SCCSCCCS-CCTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCC--CCTTCTTCCE
T ss_pred             CccccCCC-CcCCCCEEEccCCcCCccccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCc--ccCCCCCCCE
Confidence            55554443 3344555555555544444311                 00135555555555555543  2555555555


Q ss_pred             EEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCC
Q psy8550         188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQL  267 (332)
Q Consensus       188 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  267 (332)
                      |++++|++++++ ..   ..+|++|++++|.++.+|.  ++.+++|+.|++++|.+++++..    .++|++|++++|.+
T Consensus       158 L~l~~N~l~~lp-~~---~~~L~~L~L~~n~l~~l~~--~~~l~~L~~L~l~~N~l~~l~~~----~~~L~~L~l~~n~l  227 (454)
T 1jl5_A          158 IDVDNNSLKKLP-DL---PPSLEFIAAGNNQLEELPE--LQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAGNNIL  227 (454)
T ss_dssp             EECCSSCCSCCC-CC---CTTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSSCCCC----CTTCCEEECCSSCC
T ss_pred             EECCCCcCcccC-CC---cccccEEECcCCcCCcCcc--ccCCCCCCEEECCCCcCCcCCCC----cCcccEEECcCCcC
Confidence            555555555442 11   1355555555555555442  45555555555555555544221    13555556666555


Q ss_pred             CCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCccc
Q psy8550         268 RSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMG  320 (332)
Q Consensus       268 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~  320 (332)
                      ..++  .++.+++|+.|++++|+++++++    .+++|+.|++++|++++++.
T Consensus       228 ~~lp--~~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~N~l~~l~~  274 (454)
T 1jl5_A          228 EELP--ELQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTDLPE  274 (454)
T ss_dssp             SSCC--CCTTCTTCCEEECCSSCCSSCCS----CCTTCCEEECCSSCCSCCCC
T ss_pred             Cccc--ccCCCCCCCEEECCCCcCCcccc----cccccCEEECCCCcccccCc
Confidence            5554  25556666666666666665443    12456666666666665543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=1.2e-25  Score=202.45  Aligned_cols=194  Identities=21%  Similarity=0.182  Sum_probs=90.2

Q ss_pred             CCCCCCCccEEEeecCCCc--cchhhhc-------CCCCCcEEEeecCcCcccCCCCC--CCCCCCcEEEcCCCcccccC
Q psy8550         131 PITLNPSIQRLVLKYNRIK--TVDSAIQ-------FYSSLQHVDLSHNQLVNIPIRGF--EPQEKLVELQLNHNKLSSVN  199 (332)
Q Consensus       131 p~~~~~~L~~L~l~~~~l~--~l~~~~~-------~l~~L~~L~l~~~~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~  199 (332)
                      |..++..++.|++++|.++  .+|..+.       ++++|++|++++|.+++..+..+  ..+++|++|++++|++++. 
T Consensus        58 p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-  136 (312)
T 1wwl_A           58 LGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-  136 (312)
T ss_dssp             CHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-
T ss_pred             HHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-
Confidence            6544444555555555543  2333332       44555555555555543333332  4455555555555555544 


Q ss_pred             ccccCCC-----CCCCEEEccCCCCCCCCccccCCCCCCcEeeccCC----------------------------CCccc
Q psy8550         200 NKTFIGL-----KSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQN----------------------------RISRI  246 (332)
Q Consensus       200 ~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n----------------------------~l~~~  246 (332)
                      |..+..+     ++|++|++++|.++.+++..++.+++|++|++++|                            .++.+
T Consensus       137 ~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~  216 (312)
T 1wwl_A          137 DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP  216 (312)
T ss_dssp             SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCH
T ss_pred             hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcch
Confidence            3344333     45555555555555544444444555555555555                            44422


Q ss_pred             ---ChhhcCCCCCCcEEeCCCCCCCCcCc-ccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCccccc
Q psy8550         247 ---DQACFEGLTALRILYLDDNQLRSVPT-PSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHS  322 (332)
Q Consensus       247 ---~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~  322 (332)
                         ....+..+++|+.|++++|.+++.++ ..+..+++|+.|++++|.++.++. .+.  ++|++||+++|+++++|.  
T Consensus       217 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~-~~~--~~L~~L~Ls~N~l~~~p~--  291 (312)
T 1wwl_A          217 SGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK-GLP--AKLSVLDLSYNRLDRNPS--  291 (312)
T ss_dssp             HHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCS-SCC--SEEEEEECCSSCCCSCCC--
T ss_pred             HHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhh-hcc--CCceEEECCCCCCCCChh--
Confidence               11222334455555555555544332 233344555555555555554333 222  455555555555555532  


Q ss_pred             ccCCCCcc
Q psy8550         323 MALGDYLH  330 (332)
Q Consensus       323 ~~~l~~L~  330 (332)
                      +..++.|+
T Consensus       292 ~~~l~~L~  299 (312)
T 1wwl_A          292 PDELPQVG  299 (312)
T ss_dssp             TTTSCEEE
T ss_pred             HhhCCCCC
Confidence            44444444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.91  E-value=5e-25  Score=212.86  Aligned_cols=87  Identities=16%  Similarity=0.171  Sum_probs=42.2

Q ss_pred             CCccEEEeecCC-Cccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEE
Q psy8550         136 PSIQRLVLKYNR-IKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLN  213 (332)
Q Consensus       136 ~~L~~L~l~~~~-l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  213 (332)
                      +++++|++++|. +..+|. .+.++++|++|++++|.+....+..++.+++|++|++++|.+..+++..+..+++|++|+
T Consensus       123 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  202 (549)
T 2z81_A          123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLE  202 (549)
T ss_dssp             TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEE
T ss_pred             CCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEE
Confidence            344444444444 333332 344444444444444444444444444444444444444444333222233466777777


Q ss_pred             ccCCCCCCC
Q psy8550         214 LRGNFLEDL  222 (332)
Q Consensus       214 L~~n~l~~~  222 (332)
                      +++|.+++.
T Consensus       203 L~~n~l~~~  211 (549)
T 2z81_A          203 LRDTNLARF  211 (549)
T ss_dssp             EESCBCTTC
T ss_pred             ccCCccccc
Confidence            777776653

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.91  E-value=1.4e-23  Score=181.57  Aligned_cols=193  Identities=22%  Similarity=0.338  Sum_probs=175.1

Q ss_pred             CCCceEEecCCCccccCCC-C--CCCccEEEeecCC-Cccchh-hhcCCCCCcEEEeec-CcCcccCCCCCCCCCCCcEE
Q psy8550         115 DETLVVTCKEANLDVIPIT-L--NPSIQRLVLKYNR-IKTVDS-AIQFYSSLQHVDLSH-NQLVNIPIRGFEPQEKLVEL  188 (332)
Q Consensus       115 ~~~~~~~c~~~~l~~lp~~-~--~~~L~~L~l~~~~-l~~l~~-~~~~l~~L~~L~l~~-~~l~~~~~~~~~~l~~L~~L  188 (332)
                      .....++..++.++.+|.. +  .+++++|++++|. ++.+++ .+.++++|++|++++ |.++.+++..|..+++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            3567899999999999874 3  2899999999997 998887 889999999999999 99999998999999999999


Q ss_pred             EcCCCcccccCccccCCCCCCC---EEEccCC-CCCCCCccccCCCCCCc-EeeccCCCCcccChhhcCCCCCCcEEeCC
Q psy8550         189 QLNHNKLSSVNNKTFIGLKSLK---VLNLRGN-FLEDLPDRLFAPLSHLE-ELDLGQNRISRIDQACFEGLTALRILYLD  263 (332)
Q Consensus       189 ~l~~n~l~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  263 (332)
                      ++++|.++++++  |..+++|+   +|++++| .++.+++..|..+++|+ .|++++|.++.+++..+.. ++|+.|+++
T Consensus       111 ~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~  187 (239)
T 2xwt_C          111 GIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN  187 (239)
T ss_dssp             EEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred             eCCCCCCccccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence            999999999744  88889998   9999999 99999998899999999 9999999999998877776 899999999


Q ss_pred             CCC-CCCcCcccccCC-CCccEEEcCCCcCCccCchhcCCCCCCCEEEccCC
Q psy8550         264 DNQ-LRSVPTPSFIYL-GMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGA  313 (332)
Q Consensus       264 ~n~-l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  313 (332)
                      +|. ++++++..|..+ ++|+.|++++|+++++++.   .+++|+.|+++++
T Consensus       188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred             CCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence            995 999998899999 9999999999999998875   5678899999987

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.91  E-value=6.1e-25  Score=211.03  Aligned_cols=160  Identities=23%  Similarity=0.314  Sum_probs=125.8

Q ss_pred             cCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccC--ccccCCCCCCCEEEccCCCCCC-CCccccCCCCC
Q psy8550         156 QFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVN--NKTFIGLKSLKVLNLRGNFLED-LPDRLFAPLSH  232 (332)
Q Consensus       156 ~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~  232 (332)
                      ..+++|++|++++|.+++..+..++.+++|++|++++|++++++  |..+.++++|++|++++|.++. +|...+..+++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~  400 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS  400 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence            45667777777777777765667777777788888777777642  3567777788888888888776 77666677778


Q ss_pred             CcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccC
Q psy8550         233 LEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG  312 (332)
Q Consensus       233 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  312 (332)
                      |+.|++++|.+++..+..+.  ++|+.|++++|+++.+|. .+..+++|+.|++++|+++++++..+..+++|++|++++
T Consensus       401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~  477 (520)
T 2z7x_B          401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPK-QVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHT  477 (520)
T ss_dssp             CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccch-hhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcC
Confidence            88888888877655454443  689999999999998877 455899999999999999998887799999999999999


Q ss_pred             CCCCCc
Q psy8550         313 AGLTNM  318 (332)
Q Consensus       313 n~l~~l  318 (332)
                      |.+++-
T Consensus       478 N~~~c~  483 (520)
T 2z7x_B          478 NPWDCS  483 (520)
T ss_dssp             SCBCCC
T ss_pred             CCCccc
Confidence            999864

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.91  E-value=5.7e-24  Score=215.66  Aligned_cols=101  Identities=23%  Similarity=0.382  Sum_probs=68.7

Q ss_pred             CCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEc
Q psy8550         231 SHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDL  310 (332)
Q Consensus       231 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  310 (332)
                      ++|+.|++++|.+..+.+..+..+++|+.|++++|.+.++++..|+.+++|+.|++++|.++++.+..|.++++|+.|++
T Consensus       266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  345 (844)
T 3j0a_A          266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL  345 (844)
T ss_dssp             SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred             CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEEC
Confidence            45666666666666666666666667777777777776666666666677777777777776666666666777777777


Q ss_pred             cCCCCCCcccccccCCCCccc
Q psy8550         311 RGAGLTNMMGHSMALGDYLHW  331 (332)
Q Consensus       311 s~n~l~~l~~~~~~~l~~L~~  331 (332)
                      ++|+++.+++..|..++.|+.
T Consensus       346 ~~N~i~~~~~~~~~~l~~L~~  366 (844)
T 3j0a_A          346 QKNHIAIIQDQTFKFLEKLQT  366 (844)
T ss_dssp             CSCCCCCCCSSCSCSCCCCCE
T ss_pred             CCCCCCccChhhhcCCCCCCE
Confidence            777777776666666666654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.91  E-value=9.6e-24  Score=200.19  Aligned_cols=180  Identities=28%  Similarity=0.435  Sum_probs=105.8

Q ss_pred             CccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccC
Q psy8550         137 SIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRG  216 (332)
Q Consensus       137 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~  216 (332)
                      ++++|++++|.++.++ .+..+++|++|++++|.+..+.+  ++.+++|+.|++++|.++++  ..+..+++|++|++++
T Consensus       178 ~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~  252 (466)
T 1o6v_A          178 TLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLAN  252 (466)
T ss_dssp             TCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCS
T ss_pred             CCCEEECcCCcCCCCh-hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCC
Confidence            4444444444444443 24444555555555555444432  44455555555555555544  2355556666666666


Q ss_pred             CCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCc
Q psy8550         217 NFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD  296 (332)
Q Consensus       217 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  296 (332)
                      |.++.+++  +..+++|+.|++++|.++.+++  +..+++|+.|++++|.+.++++  ++.+++|+.|++++|++++.++
T Consensus       253 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~  326 (466)
T 1o6v_A          253 NQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP  326 (466)
T ss_dssp             SCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG
T ss_pred             Cccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh
Confidence            66665554  4556666666666666666543  5566666777777776666554  5666777777777777776655


Q ss_pred             hhcCCCCCCCEEEccCCCCCCcccccccCCCCccc
Q psy8550         297 GAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHW  331 (332)
Q Consensus       297 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~  331 (332)
                        +..+++|+.|++++|+++++  ..++.++.|+.
T Consensus       327 --~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~  357 (466)
T 1o6v_A          327 --VSSLTKLQRLFFYNNKVSDV--SSLANLTNINW  357 (466)
T ss_dssp             --GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCE
T ss_pred             --hccCccCCEeECCCCccCCc--hhhccCCCCCE
Confidence              56677777777777777766  24666666654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.91  E-value=2.3e-24  Score=204.45  Aligned_cols=202  Identities=20%  Similarity=0.290  Sum_probs=145.2

Q ss_pred             CCCceEEecCCCccccCCC-CCCCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCC
Q psy8550         115 DETLVVTCKEANLDVIPIT-LNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN  193 (332)
Q Consensus       115 ~~~~~~~c~~~~l~~lp~~-~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n  193 (332)
                      ..+..++..++.+..++.- -.+++++|++++|.+..+++ ++.+++|++|++++|.+..++  .+..+++|++|++++|
T Consensus       177 ~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n  253 (466)
T 1o6v_A          177 TTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANN  253 (466)
T ss_dssp             TTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSS
T ss_pred             CCCCEEECcCCcCCCChhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccch--hhhcCCCCCEEECCCC
Confidence            3456677777777665531 12678888888888876655 667788888888888777663  4667778888888888


Q ss_pred             cccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcc
Q psy8550         194 KLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTP  273 (332)
Q Consensus       194 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  273 (332)
                      .+.+..+  +..+++|++|++++|.++.+++  +..+++|+.|++++|.++++++  +..+++|+.|++++|.++++++ 
T Consensus       254 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-  326 (466)
T 1o6v_A          254 QISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-  326 (466)
T ss_dssp             CCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-
T ss_pred             ccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh-
Confidence            7777655  6777788888888887777766  5677777888888777777644  5667777777777777777665 


Q ss_pred             cccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCccc
Q psy8550         274 SFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHW  331 (332)
Q Consensus       274 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~  331 (332)
                       ++.+++|+.|++++|++++..  .+.++++|+.|++++|+++++++  +..++.|+.
T Consensus       327 -~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~  379 (466)
T 1o6v_A          327 -VSSLTKLQRLFFYNNKVSDVS--SLANLTNINWLSAGHNQISDLTP--LANLTRITQ  379 (466)
T ss_dssp             -GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCE
T ss_pred             -hccCccCCEeECCCCccCCch--hhccCCCCCEEeCCCCccCccch--hhcCCCCCE
Confidence             566777777777777777762  56777777777777777777766  566666543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.91  E-value=2e-23  Score=187.49  Aligned_cols=193  Identities=21%  Similarity=0.328  Sum_probs=172.9

Q ss_pred             CCceEEecCCCccccCCCCC--CCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCC
Q psy8550         116 ETLVVTCKEANLDVIPITLN--PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN  193 (332)
Q Consensus       116 ~~~~~~c~~~~l~~lp~~~~--~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n  193 (332)
                      ....+++.++.+..+|. +.  +++++|++++|.++.+++ +..+++|++|++++|.+..++  .+..+++|++|++++|
T Consensus        42 ~L~~L~l~~~~i~~l~~-~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~~n  117 (308)
T 1h6u_A           42 GITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTST  117 (308)
T ss_dssp             TCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG--GGTTCTTCCEEECTTS
T ss_pred             CcCEEEeeCCCccCchh-hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch--hhcCCCCCCEEECCCC
Confidence            45578888888888873 43  899999999999999988 999999999999999999874  6889999999999999


Q ss_pred             cccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcc
Q psy8550         194 KLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTP  273 (332)
Q Consensus       194 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  273 (332)
                      .++++++  +..+++|++|++++|.++.+++  ++.+++|+.|++++|.++.+++  +..+++|+.|++++|.++++++ 
T Consensus       118 ~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-  190 (308)
T 1h6u_A          118 QITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP-  190 (308)
T ss_dssp             CCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-
T ss_pred             CCCCchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh-
Confidence            9999854  8899999999999999999887  6889999999999999998865  8899999999999999999876 


Q ss_pred             cccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCccccc
Q psy8550         274 SFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHS  322 (332)
Q Consensus       274 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~  322 (332)
                       +..+++|+.|++++|++++.++  +..+++|+.|++++|+++..+...
T Consensus       191 -l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~~~~~  236 (308)
T 1h6u_A          191 -LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFY  236 (308)
T ss_dssp             -GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECCCEEC
T ss_pred             -hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecCCeee
Confidence             7889999999999999999885  889999999999999998866544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.91  E-value=2.2e-23  Score=187.20  Aligned_cols=182  Identities=25%  Similarity=0.411  Sum_probs=166.6

Q ss_pred             CCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEcc
Q psy8550         136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLR  215 (332)
Q Consensus       136 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  215 (332)
                      +++++|+++++.++.++ .+..+++|++|++++|.+..+++  +..+++|++|++++|.+++++  .+..+++|++|+++
T Consensus        41 ~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~  115 (308)
T 1h6u_A           41 DGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLT  115 (308)
T ss_dssp             HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG--GGTTCTTCCEEECT
T ss_pred             CCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch--hhcCCCCCCEEECC
Confidence            68999999999999987 68899999999999999999875  899999999999999999873  68899999999999


Q ss_pred             CCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccC
Q psy8550         216 GNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA  295 (332)
Q Consensus       216 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  295 (332)
                      +|.++.+++  +..+++|+.|++++|.++.+++  +..+++|+.|++++|.++++++  +..+++|+.|++++|.+++++
T Consensus       116 ~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~  189 (308)
T 1h6u_A          116 STQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDIS  189 (308)
T ss_dssp             TSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG
T ss_pred             CCCCCCchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcCh
Confidence            999999876  7899999999999999998865  8889999999999999999876  889999999999999999987


Q ss_pred             chhcCCCCCCCEEEccCCCCCCcccccccCCCCcccC
Q psy8550         296 DGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHWI  332 (332)
Q Consensus       296 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~l  332 (332)
                      +  +..+++|+.|++++|+++++++  +..++.|+.|
T Consensus       190 ~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L  222 (308)
T 1h6u_A          190 P--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIV  222 (308)
T ss_dssp             G--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEE
T ss_pred             h--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEE
Confidence            6  8899999999999999999885  7888887653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.91  E-value=1.5e-24  Score=195.58  Aligned_cols=233  Identities=15%  Similarity=0.127  Sum_probs=177.9

Q ss_pred             hhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCcccCCCceEEecCCCccccCC-CCCCCccEE
Q psy8550          63 VRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKEANLDVIPI-TLNPSIQRL  141 (332)
Q Consensus        63 ~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~c~c~~~~~~~~c~~~~l~~lp~-~~~~~L~~L  141 (332)
                      +..+.+|+.|++++|.+....+...                        .....++.++..++.+..++. .-.+++++|
T Consensus        30 ~~~~~~L~~L~L~~n~l~~~~~~~~------------------------~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L   85 (317)
T 3o53_A           30 RQSAWNVKELDLSGNPLSQISAADL------------------------APFTKLELLNLSSNVLYETLDLESLSTLRTL   85 (317)
T ss_dssp             HTTGGGCSEEECTTSCCCCCCHHHH------------------------TTCTTCCEEECTTSCCEEEEEETTCTTCCEE
T ss_pred             hccCCCCCEEECcCCccCcCCHHHh------------------------hCCCcCCEEECCCCcCCcchhhhhcCCCCEE
Confidence            4456678888888887776643221                        122345678888887775543 223788999


Q ss_pred             EeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCC
Q psy8550         142 VLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLED  221 (332)
Q Consensus       142 ~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  221 (332)
                      ++++|.++.++.    .++|++|++++|.+..+++..   +++|++|++++|+++++.+..+..+++|++|++++|.++.
T Consensus        86 ~Ls~n~l~~l~~----~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  158 (317)
T 3o53_A           86 DLNNNYVQELLV----GPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT  158 (317)
T ss_dssp             ECCSSEEEEEEE----CTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE
T ss_pred             ECcCCccccccC----CCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc
Confidence            999988887763    378899999999888877543   5778999999999988888888888899999999999888


Q ss_pred             CCcccc-CCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcC
Q psy8550         222 LPDRLF-APLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFN  300 (332)
Q Consensus       222 ~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  300 (332)
                      +++..+ ..+++|++|++++|.++.++.  ...+++|++|++++|.++++++. +..+++|+.|++++|+++++++ .+.
T Consensus       159 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~-~~~  234 (317)
T 3o53_A          159 VNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEK-ALR  234 (317)
T ss_dssp             EEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECT-TCC
T ss_pred             ccHHHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccchhh-Hhh
Confidence            766554 467889999999998888743  33578899999999999888774 7788899999999999987655 678


Q ss_pred             CCCCCCEEEccCCCCC-CcccccccCCCCcc
Q psy8550         301 GLGRLSALDLRGAGLT-NMMGHSMALGDYLH  330 (332)
Q Consensus       301 ~l~~L~~L~Ls~n~l~-~l~~~~~~~l~~L~  330 (332)
                      .+++|+.|++++|.++ +..+..+..++.|+
T Consensus       235 ~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~  265 (317)
T 3o53_A          235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ  265 (317)
T ss_dssp             CCTTCCEEECTTCCCBHHHHHHHHHTCHHHH
T ss_pred             cCCCCCEEEccCCCccCcCHHHHHhccccce
Confidence            8889999999999888 55556666655543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.91  E-value=1.4e-22  Score=191.58  Aligned_cols=224  Identities=17%  Similarity=0.206  Sum_probs=154.4

Q ss_pred             ccchhhhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCcccCCCceEEecCCCccccCCCCCCC
Q psy8550          58 IIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPS  137 (332)
Q Consensus        58 ~iP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~c~c~~~~~~~~c~~~~l~~lp~~~~~~  137 (332)
                      ..+..++++.+|+.|+++++.+.+.+.                          ......++.+++.++.++.+|..-.++
T Consensus        33 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------------------------l~~l~~L~~L~Ls~n~l~~~~~~~l~~   86 (457)
T 3bz5_A           33 TDTISEEQLATLTSLDCHNSSITDMTG--------------------------IEKLTGLTKLICTSNNITTLDLSQNTN   86 (457)
T ss_dssp             TSEEEHHHHTTCCEEECCSSCCCCCTT--------------------------GGGCTTCSEEECCSSCCSCCCCTTCTT
T ss_pred             ccccChhHcCCCCEEEccCCCcccChh--------------------------hcccCCCCEEEccCCcCCeEccccCCC
Confidence            345567888888888888877665421                          122234556777777777776444477


Q ss_pred             ccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCC
Q psy8550         138 IQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGN  217 (332)
Q Consensus       138 L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n  217 (332)
                      +++|++++|.++.++  ++.+++|++|++++|.++.++   ++.+++|++|++++|+++++ +  ++++++|++|++++|
T Consensus        87 L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n  158 (457)
T 3bz5_A           87 LTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLN  158 (457)
T ss_dssp             CSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC---CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTC
T ss_pred             CCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec---CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCC
Confidence            788888888777764  777778888888888777763   67777788888887777776 2  667777777777777


Q ss_pred             C-CCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCc
Q psy8550         218 F-LEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD  296 (332)
Q Consensus       218 ~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  296 (332)
                      . +..++   ++.+++|+.|++++|.++.++   +..+++|+.|++++|.+++++   ++.+++|+.|++++|++++++ 
T Consensus       159 ~~~~~~~---~~~l~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~~---l~~l~~L~~L~Ls~N~l~~ip-  228 (457)
T 3bz5_A          159 KKITKLD---VTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTEID-  228 (457)
T ss_dssp             SCCCCCC---CTTCTTCCEEECCSSCCCCCC---CTTCTTCCEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC-
T ss_pred             Ccccccc---cccCCcCCEEECCCCccceec---cccCCCCCEEECcCCcCCeec---cccCCCCCEEECcCCcccccC-
Confidence            3 43441   466777777777777777763   566677777777777777662   566777777777777777743 


Q ss_pred             hhcCCCCCCCEEEccCCCCCCcccccccCCC
Q psy8550         297 GAFNGLGRLSALDLRGAGLTNMMGHSMALGD  327 (332)
Q Consensus       297 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~  327 (332)
                        ++.+++|+.|++++|++++++...+..++
T Consensus       229 --~~~l~~L~~L~l~~N~l~~~~~~~l~~L~  257 (457)
T 3bz5_A          229 --VTPLTQLTYFDCSVNPLTELDVSTLSKLT  257 (457)
T ss_dssp             --CTTCTTCSEEECCSSCCSCCCCTTCTTCC
T ss_pred             --ccccCCCCEEEeeCCcCCCcCHHHCCCCC
Confidence              56677777777777777777665555444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=1.4e-24  Score=207.06  Aligned_cols=230  Identities=15%  Similarity=0.123  Sum_probs=178.1

Q ss_pred             hhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCcccCCCceEEecCCCccccCC-CCCCCccEEEe
Q psy8550          65 ILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKEANLDVIPI-TLNPSIQRLVL  143 (332)
Q Consensus        65 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~c~c~~~~~~~~c~~~~l~~lp~-~~~~~L~~L~l  143 (332)
                      .+.+|+.|++++|.+....+..                        ......+..++..++.+..++. .-.++|++|++
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~------------------------~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~L   87 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAAD------------------------LAPFTKLELLNLSSNVLYETLDLESLSTLRTLDL   87 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGG------------------------GTTCTTCCEEECTTSCCEEEEECTTCTTCCEEEC
T ss_pred             cCCCccEEEeeCCcCCCCCHHH------------------------HhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEe
Confidence            3347888888888777654311                        1233456678888888775443 22378999999


Q ss_pred             ecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCC
Q psy8550         144 KYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLP  223 (332)
Q Consensus       144 ~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  223 (332)
                      ++|.++.++.    .++|++|++++|.+..+++.   .+++|+.|++++|.++++.|..|+++++|++|++++|.++..+
T Consensus        88 s~N~l~~l~~----~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  160 (487)
T 3oja_A           88 NNNYVQELLV----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN  160 (487)
T ss_dssp             CSSEEEEEEE----CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE
T ss_pred             cCCcCCCCCC----CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC
Confidence            9998887764    37899999999999888754   3578999999999999988888888999999999999998876


Q ss_pred             ccccC-CCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCC
Q psy8550         224 DRLFA-PLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGL  302 (332)
Q Consensus       224 ~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  302 (332)
                      +..+. .+++|+.|++++|.++++++  ...+++|+.|++++|.++++++ .++.+++|+.|++++|.++++++ .+..+
T Consensus       161 ~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~lp~-~l~~l  236 (487)
T 3oja_A          161 FAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEK-ALRFS  236 (487)
T ss_dssp             GGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEECT-TCCCC
T ss_pred             hHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcccch-hhccC
Confidence            65554 68899999999999988744  3458899999999999999887 48888999999999999998665 58888


Q ss_pred             CCCCEEEccCCCCC-CcccccccCCCCc
Q psy8550         303 GRLSALDLRGAGLT-NMMGHSMALGDYL  329 (332)
Q Consensus       303 ~~L~~L~Ls~n~l~-~l~~~~~~~l~~L  329 (332)
                      ++|+.|++++|.+. +..+..+..++.|
T Consensus       237 ~~L~~L~l~~N~l~c~~~~~~~~~l~~L  264 (487)
T 3oja_A          237 QNLEHFDLRGNGFHCGTLRDFFSKNQRV  264 (487)
T ss_dssp             TTCCEEECTTCCBCHHHHHHHHTTCHHH
T ss_pred             CCCCEEEcCCCCCcCcchHHHHHhCCCC
Confidence            99999999999888 4444555554443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.90  E-value=1.3e-22  Score=191.96  Aligned_cols=206  Identities=19%  Similarity=0.211  Sum_probs=124.5

Q ss_pred             CCchhhHhhhhccchhhhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCcccCCCceEEecCCC
Q psy8550          47 KSPTEILKSLLIIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKEAN  126 (332)
Q Consensus        47 ~~~~~~~~~l~~iP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~c~c~~~~~~~~c~~~~  126 (332)
                      ..++.....+..+| .++.+.+|+.|++++|.+++..                           ......++.+++.++.
T Consensus        45 ~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~---------------------------~~~l~~L~~L~Ls~N~   96 (457)
T 3bz5_A           45 TSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD---------------------------LSQNTNLTYLACDSNK   96 (457)
T ss_dssp             CEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC---------------------------CTTCTTCSEEECCSSC
T ss_pred             CEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc---------------------------cccCCCCCEEECcCCC
Confidence            33444444455555 5777777887777777666531                           0112334566666666


Q ss_pred             ccccCCCCCCCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCC
Q psy8550         127 LDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGL  206 (332)
Q Consensus       127 l~~lp~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  206 (332)
                      +..+|..-.+++++|++++|.++.++  ++.+++|++|++++|.++.++   ++.+++|++|++++|...+..  .+..+
T Consensus        97 l~~~~~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l  169 (457)
T 3bz5_A           97 LTNLDVTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKL--DVTPQ  169 (457)
T ss_dssp             CSCCCCTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSCCCCC--CCTTC
T ss_pred             CceeecCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccceec---cccCCcCCEEECCCCCccccc--ccccC
Confidence            66665433466777777777766664  666677777777777766652   556666666666666332221  25566


Q ss_pred             CCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEc
Q psy8550         207 KSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRV  286 (332)
Q Consensus       207 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  286 (332)
                      ++|++|++++|.++.++   ++.+++|+.|++++|.++.++   ++.+++|+.|++++|+++++|   ++.+++|+.|++
T Consensus       170 ~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~~---l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l  240 (457)
T 3bz5_A          170 TQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDC  240 (457)
T ss_dssp             TTCCEEECCSSCCCCCC---CTTCTTCCEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEEC
T ss_pred             CcCCEEECCCCccceec---cccCCCCCEEECcCCcCCeec---cccCCCCCEEECcCCcccccC---ccccCCCCEEEe
Confidence            66666666666666654   455666666666666666552   555666666666666666654   455666666666


Q ss_pred             CCCcCCccCc
Q psy8550         287 GLNVFTTLAD  296 (332)
Q Consensus       287 ~~n~l~~~~~  296 (332)
                      ++|++++.++
T Consensus       241 ~~N~l~~~~~  250 (457)
T 3bz5_A          241 SVNPLTELDV  250 (457)
T ss_dssp             CSSCCSCCCC
T ss_pred             eCCcCCCcCH
Confidence            6666666554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.90  E-value=3.6e-23  Score=175.13  Aligned_cols=180  Identities=29%  Similarity=0.336  Sum_probs=163.4

Q ss_pred             cEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCC
Q psy8550         139 QRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNF  218 (332)
Q Consensus       139 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~  218 (332)
                      +.++.+++.++.+|..+  .++|++|++++|.++.+++..|..+++|++|++++|+++.+++..|.++++|++|++++|.
T Consensus        10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~   87 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ   87 (208)
T ss_dssp             TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence            56788888999888644  4699999999999999998889999999999999999999988889999999999999999


Q ss_pred             CCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchh
Q psy8550         219 LEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGA  298 (332)
Q Consensus       219 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  298 (332)
                      ++.+++..+..+++|++|++++|.++.+++..+..+++|++|++++|.++++++..+..+++|+.|++++|.+.+     
T Consensus        88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-----  162 (208)
T 2o6s_A           88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-----  162 (208)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-----
T ss_pred             CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-----
Confidence            999999888999999999999999999988888999999999999999999999889999999999999997764     


Q ss_pred             cCCCCCCCEEEccCCCCCCcccccccCCC
Q psy8550         299 FNGLGRLSALDLRGAGLTNMMGHSMALGD  327 (332)
Q Consensus       299 ~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~  327 (332)
                        .+++|+.|+++.|++++..|..++.++
T Consensus       163 --~~~~l~~L~~~~n~~~g~ip~~~~~l~  189 (208)
T 2o6s_A          163 --TCPGIRYLSEWINKHSGVVRNSAGSVA  189 (208)
T ss_dssp             --CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred             --CCCCHHHHHHHHHhCCceeeccCcccc
Confidence              456889999999999988777777654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=2.8e-23  Score=198.03  Aligned_cols=203  Identities=20%  Similarity=0.205  Sum_probs=173.3

Q ss_pred             CCceEEecCCCccccCC-CCC--CCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCC
Q psy8550         116 ETLVVTCKEANLDVIPI-TLN--PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNH  192 (332)
Q Consensus       116 ~~~~~~c~~~~l~~lp~-~~~--~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~  192 (332)
                      ....++..++.+..+|. .+.  ++|++|++++|.++.+++ +..+++|++|++++|.++.+++     .++|++|++++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~~  108 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAAN  108 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECCS
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECcC
Confidence            35578888888887763 333  789999999999986665 8899999999999999888764     27899999999


Q ss_pred             CcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcC-CCCCCcEEeCCCCCCCCcC
Q psy8550         193 NKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFE-GLTALRILYLDDNQLRSVP  271 (332)
Q Consensus       193 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~  271 (332)
                      |.++++++.   .+++|+.|++++|.++.+++..++.+++|+.|++++|.++++.+..+. .+++|+.|++++|.+++++
T Consensus       109 N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~  185 (487)
T 3oja_A          109 NNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK  185 (487)
T ss_dssp             SCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred             CcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc
Confidence            999988664   357899999999999999887788899999999999999988777775 7899999999999999986


Q ss_pred             cccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCccc
Q psy8550         272 TPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHW  331 (332)
Q Consensus       272 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~  331 (332)
                      +  +..+++|+.|++++|.++++++. +..+++|+.|++++|.++++|+. +..++.|+.
T Consensus       186 ~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~  241 (487)
T 3oja_A          186 G--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEH  241 (487)
T ss_dssp             C--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTT-CCCCTTCCE
T ss_pred             c--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccchh-hccCCCCCE
Confidence            5  44689999999999999998885 88999999999999999998764 777777654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.89  E-value=2.2e-23  Score=187.90  Aligned_cols=203  Identities=20%  Similarity=0.205  Sum_probs=171.5

Q ss_pred             CCceEEecCCCccccCC-CC--CCCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCC
Q psy8550         116 ETLVVTCKEANLDVIPI-TL--NPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNH  192 (332)
Q Consensus       116 ~~~~~~c~~~~l~~lp~-~~--~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~  192 (332)
                      ..+.++..++.+..++. .+  .+++++|++++|.++.+++ +..+++|++|++++|.++++++     .++|++|++++
T Consensus        35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~-----~~~L~~L~l~~  108 (317)
T 3o53_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAAN  108 (317)
T ss_dssp             GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE-----CTTCCEEECCS
T ss_pred             CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC-----CCCcCEEECCC
Confidence            35578888888887763 22  2789999999999887665 8889999999999999887763     37899999999


Q ss_pred             CcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhc-CCCCCCcEEeCCCCCCCCcC
Q psy8550         193 NKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACF-EGLTALRILYLDDNQLRSVP  271 (332)
Q Consensus       193 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~  271 (332)
                      |.++++.+..   +++|++|++++|.++.+++..++.+++|+.|++++|.++.+.+..+ ..+++|++|++++|.+++++
T Consensus       109 n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~  185 (317)
T 3o53_A          109 NNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK  185 (317)
T ss_dssp             SCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred             CccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc
Confidence            9998886544   5789999999999999988888889999999999999998877666 46899999999999999986


Q ss_pred             cccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCccc
Q psy8550         272 TPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHW  331 (332)
Q Consensus       272 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~  331 (332)
                      .  ...+++|+.|++++|+++++++. +..+++|+.|++++|+++++++ .+..++.|+.
T Consensus       186 ~--~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~-~~~~l~~L~~  241 (317)
T 3o53_A          186 G--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEK-ALRFSQNLEH  241 (317)
T ss_dssp             C--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECT-TCCCCTTCCE
T ss_pred             c--ccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccchhh-HhhcCCCCCE
Confidence            5  33589999999999999998875 8899999999999999998865 5777777764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.89  E-value=6.7e-23  Score=188.15  Aligned_cols=177  Identities=28%  Similarity=0.359  Sum_probs=162.5

Q ss_pred             cEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCC-CCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCC
Q psy8550         139 QRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFE-PQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGN  217 (332)
Q Consensus       139 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n  217 (332)
                      +.++++++.++.+|..+.  ..++.|++++|.++.+++..|. .+++|++|++++|+++++.+..|.++++|++|+|++|
T Consensus        21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            578999999999997554  4689999999999999988888 9999999999999999999999999999999999999


Q ss_pred             CCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccc---cCCCCccEEEcCCCcCCcc
Q psy8550         218 FLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSF---IYLGMLAELRVGLNVFTTL  294 (332)
Q Consensus       218 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~  294 (332)
                      .++.+++..|..+++|+.|++++|.++.+.+..|..+++|+.|+|++|.+++++...|   ..+++|+.|++++|+++++
T Consensus        99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  178 (361)
T 2xot_A           99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL  178 (361)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred             cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence            9999999889999999999999999999999999999999999999999999998777   5689999999999999999


Q ss_pred             CchhcCCCCC--CCEEEccCCCCCC
Q psy8550         295 ADGAFNGLGR--LSALDLRGAGLTN  317 (332)
Q Consensus       295 ~~~~~~~l~~--L~~L~Ls~n~l~~  317 (332)
                      ++..+..++.  ++.|++++|.+..
T Consensus       179 ~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          179 PLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             CHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             CHHHhhhccHhhcceEEecCCCccC
Confidence            9888888877  4889999998864

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.88  E-value=4.7e-22  Score=169.91  Aligned_cols=153  Identities=27%  Similarity=0.463  Sum_probs=144.2

Q ss_pred             cEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCC
Q psy8550         139 QRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNF  218 (332)
Q Consensus       139 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~  218 (332)
                      +.++++++.++.+|..+.  +++++|++++|.++.+++..|..+++|++|++++|+++++.|..|.++++|++|+|++|.
T Consensus        14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            578899999999998554  789999999999999998899999999999999999999999999999999999999999


Q ss_pred             CCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCc
Q psy8550         219 LEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTT  293 (332)
Q Consensus       219 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  293 (332)
                      ++.+++..|..+++|+.|++++|.++.+.+..|..+++|+.|++++|.++++++..|..+++|+.|++++|++..
T Consensus        92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            999999989999999999999999999999999999999999999999999999889999999999999999864

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.88  E-value=6.5e-22  Score=191.03  Aligned_cols=186  Identities=22%  Similarity=0.300  Sum_probs=163.1

Q ss_pred             CCceEEecCCCccccCCCCCCCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcc
Q psy8550         116 ETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKL  195 (332)
Q Consensus       116 ~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l  195 (332)
                      ....+++.++.+..+|..++++++.|++++|.++.+|   ..+++|++|++++|.++.++.  +..  +|++|++++|.+
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~N~l  132 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDNNQL  132 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCSSCC
T ss_pred             CccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCCCcC
Confidence            4668999999999999989999999999999999998   568999999999999999875  554  999999999999


Q ss_pred             cccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccc
Q psy8550         196 SSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSF  275 (332)
Q Consensus       196 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  275 (332)
                      +++++    .+++|++|++++|.++.+|.    .+++|+.|++++|.++.++.  +.  ++|+.|++++|.++.+|.  +
T Consensus       133 ~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp~--~  198 (571)
T 3cvr_A          133 TMLPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESLPA--V  198 (571)
T ss_dssp             SCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSCCC--C
T ss_pred             CCCCC----cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCchhh--H
Confidence            99754    67899999999999999886    46899999999999999765  65  899999999999998887  5


Q ss_pred             cCCCCc-------cEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccC
Q psy8550         276 IYLGML-------AELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMAL  325 (332)
Q Consensus       276 ~~l~~L-------~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~  325 (332)
                      ..  +|       +.|++++|+++.+++ .+..+++|+.|+|++|++++..+..+..
T Consensus       199 ~~--~L~~~~~~L~~L~Ls~N~l~~lp~-~l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          199 PV--RNHHSEETEIFFRCRENRITHIPE-NILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             C----------CCEEEECCSSCCCCCCG-GGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             HH--hhhcccccceEEecCCCcceecCH-HHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence            43  77       999999999998776 5666999999999999999888777654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=1.3e-22  Score=182.34  Aligned_cols=196  Identities=17%  Similarity=0.150  Sum_probs=158.0

Q ss_pred             CceEEecCCCcc-ccCCCC----CCCccEEEeecCCCcc----chh-hhcCCCCCcEEEeecCcCcccCCCCCCCCCCCc
Q psy8550         117 TLVVTCKEANLD-VIPITL----NPSIQRLVLKYNRIKT----VDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLV  186 (332)
Q Consensus       117 ~~~~~c~~~~l~-~lp~~~----~~~L~~L~l~~~~l~~----l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~  186 (332)
                      .+.++..++.+. ..|..+    .+++++|++++|.++.    ++. .+..+++|++|++++|.+..+++..|+.+++|+
T Consensus        93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  172 (310)
T 4glp_A           93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALT  172 (310)
T ss_dssp             CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCC
T ss_pred             eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCC
Confidence            557888888776 455544    3789999999999884    222 556789999999999999999888999999999


Q ss_pred             EEEcCCCcccc---cC-ccccCCCCCCCEEEccCCCCCCCCcc---ccCCCCCCcEeeccCCCCcccChhhcCCC---CC
Q psy8550         187 ELQLNHNKLSS---VN-NKTFIGLKSLKVLNLRGNFLEDLPDR---LFAPLSHLEELDLGQNRISRIDQACFEGL---TA  256 (332)
Q Consensus       187 ~L~l~~n~l~~---~~-~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~  256 (332)
                      +|++++|++.+   +. +..+..+++|++|++++|.++.++..   .++.+++|++|++++|.++...|..+..+   ++
T Consensus       173 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~  252 (310)
T 4glp_A          173 SLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSA  252 (310)
T ss_dssp             EEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTT
T ss_pred             EEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCc
Confidence            99999998765   32 23346789999999999999876653   34677899999999999998866556665   69


Q ss_pred             CcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCC
Q psy8550         257 LRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN  317 (332)
Q Consensus       257 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  317 (332)
                      |++|++++|+++.+|.. +  .++|+.|++++|++++++.  +..+++|+.|++++|+++.
T Consensus       253 L~~L~Ls~N~l~~lp~~-~--~~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          253 LNSLNLSFAGLEQVPKG-L--PAKLRVLDLSSNRLNRAPQ--PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CCCEECCSSCCCSCCSC-C--CSCCSCEECCSCCCCSCCC--TTSCCCCSCEECSSTTTSC
T ss_pred             CCEEECCCCCCCchhhh-h--cCCCCEEECCCCcCCCCch--hhhCCCccEEECcCCCCCC
Confidence            99999999999988763 3  2799999999999998743  6788999999999999875

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.88  E-value=6.4e-22  Score=193.13  Aligned_cols=206  Identities=25%  Similarity=0.291  Sum_probs=124.2

Q ss_pred             CCCCCcccC-CCceEEecCCCccccCCCCCCCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCC
Q psy8550         107 CPPDCDCND-ETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKL  185 (332)
Q Consensus       107 ~p~~c~c~~-~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L  185 (332)
                      ||..|.|.. ....++|.++.++.+|..++++++.|++++|.++.+|.   .+++|++|++++|.++.++.    .+++|
T Consensus        31 ~~~~~~c~~~~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L  103 (622)
T 3g06_A           31 VQKMRACLNNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV----LPPGL  103 (622)
T ss_dssp             HHHHHHHHHHCCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC----CCTTC
T ss_pred             CcccccccCCCCcEEEecCCCcCccChhhCCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC----CCCCC
Confidence            455556653 25578888888888888888888888888888887776   56778888888887777663    45666


Q ss_pred             cEEEcCCCcccccCccccC-----------------CCCCCCEEEccCCCCCCCCccccCCC-----------------C
Q psy8550         186 VELQLNHNKLSSVNNKTFI-----------------GLKSLKVLNLRGNFLEDLPDRLFAPL-----------------S  231 (332)
Q Consensus       186 ~~L~l~~n~l~~~~~~~~~-----------------~l~~L~~L~L~~n~l~~~~~~~~~~l-----------------~  231 (332)
                      ++|++++|.++++++ .+.                 .+++|++|++++|.++.+|.. +..+                 +
T Consensus       104 ~~L~Ls~N~l~~l~~-~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~l~~~-~~~L~~L~L~~N~l~~l~~~~~  181 (622)
T 3g06_A          104 LELSIFSNPLTHLPA-LPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPAL-PSELCKLWAYNNQLTSLPMLPS  181 (622)
T ss_dssp             CEEEECSCCCCCCCC-CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCC-CTTCCEEECCSSCCSCCCCCCT
T ss_pred             CEEECcCCcCCCCCC-CCCCcCEEECCCCCCCcCCCCCCCCCEEECcCCcCCCcCCc-cCCCCEEECCCCCCCCCcccCC
Confidence            666666666665532 110                 124556666666655554431 1111                 4


Q ss_pred             CCcEeeccCCCCcccChhhcCC-----------------CCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCcc
Q psy8550         232 HLEELDLGQNRISRIDQACFEG-----------------LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTL  294 (332)
Q Consensus       232 ~L~~L~L~~n~l~~~~~~~~~~-----------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  294 (332)
                      +|+.|++++|.++.++.. +..                 +++|+.|++++|.+++++    ..+++|+.|++++|.++++
T Consensus       182 ~L~~L~Ls~N~l~~l~~~-~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~l  256 (622)
T 3g06_A          182 GLQELSVSDNQLASLPTL-PSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSL  256 (622)
T ss_dssp             TCCEEECCSSCCSCCCCC-CTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCC
T ss_pred             CCcEEECCCCCCCCCCCc-cchhhEEECcCCcccccCCCCCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcC
Confidence            455555555555544221 110                 134555555555555544    2345666666666666655


Q ss_pred             CchhcCCCCCCCEEEccCCCCCCcccccccCCCCccc
Q psy8550         295 ADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHW  331 (332)
Q Consensus       295 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~  331 (332)
                      ++    .+++|+.|++++|+|+.+|+ .|..++.|+.
T Consensus       257 p~----~~~~L~~L~Ls~N~L~~lp~-~l~~l~~L~~  288 (622)
T 3g06_A          257 PM----LPSGLLSLSVYRNQLTRLPE-SLIHLSSETT  288 (622)
T ss_dssp             CC----CCTTCCEEECCSSCCCSCCG-GGGGSCTTCE
T ss_pred             Cc----ccccCcEEeCCCCCCCcCCH-HHhhccccCE
Confidence            44    45677777777777777654 4666666654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.88  E-value=3.8e-22  Score=177.71  Aligned_cols=175  Identities=30%  Similarity=0.407  Sum_probs=143.1

Q ss_pred             CCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEcc
Q psy8550         136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLR  215 (332)
Q Consensus       136 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  215 (332)
                      ++++.|++++|.++.++. +..+++|++|++++|.++.+++  +..+++|++|++++|.++.++  .+..+++|++|+++
T Consensus        46 ~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~  120 (291)
T 1h6t_A           46 NSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSLE  120 (291)
T ss_dssp             HTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG--GGTTCTTCCEEECT
T ss_pred             CcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCCh--hhccCCCCCEEECC
Confidence            577888888888888754 7788889999999888888775  788888999999888888863  37888889999999


Q ss_pred             CCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccC
Q psy8550         216 GNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA  295 (332)
Q Consensus       216 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  295 (332)
                      +|.++.++.  +..+++|+.|++++|.++.+  ..+..+++|+.|++++|.++++++  +..+++|+.|++++|.+++++
T Consensus       121 ~n~i~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~  194 (291)
T 1h6t_A          121 HNGISDING--LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR  194 (291)
T ss_dssp             TSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG
T ss_pred             CCcCCCChh--hcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCCh
Confidence            988888743  57788899999998888877  347788889999999998888776  778888999999999888864


Q ss_pred             chhcCCCCCCCEEEccCCCCCCcccccc
Q psy8550         296 DGAFNGLGRLSALDLRGAGLTNMMGHSM  323 (332)
Q Consensus       296 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~  323 (332)
                        .+..+++|+.|++++|+++..+...+
T Consensus       195 --~l~~l~~L~~L~l~~n~i~~~~~~~~  220 (291)
T 1h6t_A          195 --ALAGLKNLDVLELFSQECLNKPINHQ  220 (291)
T ss_dssp             --GGTTCTTCSEEEEEEEEEECCCEECC
T ss_pred             --hhccCCCCCEEECcCCcccCCccccc
Confidence              37888889999999888876655443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.87  E-value=2.2e-21  Score=166.73  Aligned_cols=162  Identities=29%  Similarity=0.485  Sum_probs=135.1

Q ss_pred             CCCCCCcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccch-hhhcCCCCCcEEEeecCcCcccCCCCCCCCCC
Q psy8550         106 FCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVD-SAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEK  184 (332)
Q Consensus       106 ~~p~~c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~  184 (332)
                      .....|.|...  .++|.+..+..+|.++++++++|++++|.++.++ ..+..+++|++|++++|.+..+++..|..+++
T Consensus        12 ~~~~~~~Cs~~--~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~   89 (229)
T 3e6j_A           12 ACPSQCSCSGT--TVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQ   89 (229)
T ss_dssp             CCCTTCEEETT--EEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             cCCCCCEEeCC--EeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCC
Confidence            34566778644  6999999999999999999999999999998774 47888899999999999988888778888888


Q ss_pred             CcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCC
Q psy8550         185 LVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDD  264 (332)
Q Consensus       185 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  264 (332)
                      |++|++++|+++.+++..|..+++|++|++++|.++.+|... ..+++|+.|++++|.++.+++..+..+++|+.|++++
T Consensus        90 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  168 (229)
T 3e6j_A           90 LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGI-ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG  168 (229)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTG-GGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             cCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCccc-ccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence            999999888888888777888888888888888888887664 7778888888888888888777778888888888888


Q ss_pred             CCCCCc
Q psy8550         265 NQLRSV  270 (332)
Q Consensus       265 n~l~~~  270 (332)
                      |.+...
T Consensus       169 N~~~c~  174 (229)
T 3e6j_A          169 NPWDCE  174 (229)
T ss_dssp             SCBCTT
T ss_pred             CCccCC
Confidence            877643

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=6.3e-22  Score=177.81  Aligned_cols=191  Identities=15%  Similarity=0.081  Sum_probs=157.4

Q ss_pred             CCccEEEeecCCCc-cchhhh--cCCCCCcEEEeecCcCcccCC----CCCCCCCCCcEEEcCCCcccccCccccCCCCC
Q psy8550         136 PSIQRLVLKYNRIK-TVDSAI--QFYSSLQHVDLSHNQLVNIPI----RGFEPQEKLVELQLNHNKLSSVNNKTFIGLKS  208 (332)
Q Consensus       136 ~~L~~L~l~~~~l~-~l~~~~--~~l~~L~~L~l~~~~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  208 (332)
                      +++++|++++|.+. ..|..+  ..+++|++|++++|.+....+    ..+..+++|++|++++|.+.++.+..|+++++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            56999999999998 455566  899999999999999987433    34457899999999999999999999999999


Q ss_pred             CCEEEccCCCCCC---CCc-cccCCCCCCcEeeccCCCCcccChh---hcCCCCCCcEEeCCCCCCCCcCcccccCC---
Q psy8550         209 LKVLNLRGNFLED---LPD-RLFAPLSHLEELDLGQNRISRIDQA---CFEGLTALRILYLDDNQLRSVPTPSFIYL---  278 (332)
Q Consensus       209 L~~L~L~~n~l~~---~~~-~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---  278 (332)
                      |++|++++|.+..   ++. ..++.+++|++|++++|.++.++..   .++.+++|++|++++|.+.+..+..++.+   
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~  250 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS  250 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence            9999999999764   332 2246789999999999999866432   35678999999999999999855466665   


Q ss_pred             CCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCccc
Q psy8550         279 GMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHW  331 (332)
Q Consensus       279 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~  331 (332)
                      ++|++|++++|+++.++. .+.  ++|+.||+++|++++++.  +..++.|+.
T Consensus       251 ~~L~~L~Ls~N~l~~lp~-~~~--~~L~~L~Ls~N~l~~~~~--~~~l~~L~~  298 (310)
T 4glp_A          251 SALNSLNLSFAGLEQVPK-GLP--AKLRVLDLSSNRLNRAPQ--PDELPEVDN  298 (310)
T ss_dssp             TTCCCEECCSSCCCSCCS-CCC--SCCSCEECCSCCCCSCCC--TTSCCCCSC
T ss_pred             CcCCEEECCCCCCCchhh-hhc--CCCCEEECCCCcCCCCch--hhhCCCccE
Confidence            699999999999997765 343  799999999999999854  566666654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.87  E-value=7.4e-21  Score=179.68  Aligned_cols=253  Identities=19%  Similarity=0.219  Sum_probs=184.0

Q ss_pred             CCCCCCCCc-----cCCchhhHhhh-hccchhhhhhhhh-------------hhhhcCccccchhhhhHHHHHHHHHHHH
Q psy8550          37 GFQNNPKSN-----FKSPTEILKSL-LIIPFEVRILNKL-------------RIFINDSVLFSSVSDITMWSLLVTTALL   97 (332)
Q Consensus        37 g~~~~p~~~-----~~~~~~~~~~l-~~iP~~~~~l~~L-------------~~l~~~~~~~~~~~~~~~~~~~~~~~~~   97 (332)
                      .+..+|+++     +..++.....+ ..+|++++++++|             +.++++++.+++.+...     ..+..+
T Consensus        22 ~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~~-----~~L~~L   96 (454)
T 1jl5_A           22 NLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELP-----PHLESL   96 (454)
T ss_dssp             ------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSCC-----TTCSEE
T ss_pred             chhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCCc-----CCCCEE
Confidence            335666433     22333333333 5899999998887             45666666655532211     000000


Q ss_pred             HHhhcCCCCCCCCCcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCC
Q psy8550          98 LLVHQASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIR  177 (332)
Q Consensus        98 ~~~~~~~~~~p~~c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~  177 (332)
                      ..........|...   ...+.+++.++.+..+|. +++++++|++++|.++.+| .++++++|++|++++|+++.++. 
T Consensus        97 ~l~~n~l~~lp~~~---~~L~~L~l~~n~l~~l~~-~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~-  170 (454)
T 1jl5_A           97 VASCNSLTELPELP---QSLKSLLVDNNNLKALSD-LPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPD-  170 (454)
T ss_dssp             ECCSSCCSSCCCCC---TTCCEEECCSSCCSCCCS-CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCC-
T ss_pred             EccCCcCCcccccc---CCCcEEECCCCccCcccC-CCCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCC-
Confidence            01111222233322   456678888888887774 4579999999999999998 59999999999999999998763 


Q ss_pred             CCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCC
Q psy8550         178 GFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTAL  257 (332)
Q Consensus       178 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  257 (332)
                      .   ..+|++|++++|.++++ | .++++++|++|++++|.++++|..    ..+|++|++++|.++.++ . ++.+++|
T Consensus       171 ~---~~~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~~l~~~----~~~L~~L~l~~n~l~~lp-~-~~~l~~L  239 (454)
T 1jl5_A          171 L---PPSLEFIAAGNNQLEEL-P-ELQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAGNNILEELP-E-LQNLPFL  239 (454)
T ss_dssp             C---CTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSSCCCC----CTTCCEEECCSSCCSSCC-C-CTTCTTC
T ss_pred             C---cccccEEECcCCcCCcC-c-cccCCCCCCEEECCCCcCCcCCCC----cCcccEEECcCCcCCccc-c-cCCCCCC
Confidence            2   35999999999999997 4 589999999999999999988763    258999999999999875 3 8899999


Q ss_pred             cEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcc
Q psy8550         258 RILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMM  319 (332)
Q Consensus       258 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~  319 (332)
                      ++|++++|++++++.    .+++|+.|++++|+++++++    ..++|+.|++++|++++++
T Consensus       240 ~~L~l~~N~l~~l~~----~~~~L~~L~l~~N~l~~l~~----~~~~L~~L~ls~N~l~~l~  293 (454)
T 1jl5_A          240 TTIYADNNLLKTLPD----LPPSLEALNVRDNYLTDLPE----LPQSLTFLDVSENIFSGLS  293 (454)
T ss_dssp             CEEECCSSCCSSCCS----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSEES
T ss_pred             CEEECCCCcCCcccc----cccccCEEECCCCcccccCc----ccCcCCEEECcCCccCccc
Confidence            999999999999875    24899999999999999665    2478999999999998865

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.87  E-value=1.5e-21  Score=163.38  Aligned_cols=138  Identities=33%  Similarity=0.603  Sum_probs=127.6

Q ss_pred             CCCCCCCcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCC
Q psy8550         105 AFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEK  184 (332)
Q Consensus       105 ~~~p~~c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~  184 (332)
                      ..||..|.|...  .++|.++.++.+|.++++++++|++++|.++.+|..+..+++|++|++++|.++.+++..|.++++
T Consensus         2 ~~CP~~C~C~~~--~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~   79 (193)
T 2wfh_A            2 SRCPTECTCLDT--VVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQ   79 (193)
T ss_dssp             --CCTTCEEETT--EEECTTSCCSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CCCCCCCEeCCC--EEEcCCCCCCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCC
Confidence            359999999754  799999999999999999999999999999999999999999999999999999999889999999


Q ss_pred             CcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCc
Q psy8550         185 LVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRIS  244 (332)
Q Consensus       185 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  244 (332)
                      |++|++++|+++.+++..|.++++|++|+|++|.++.+++..|..+++|+.|++++|.+.
T Consensus        80 L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           80 LLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            999999999999999989999999999999999999999888888999999999998775

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.87  E-value=2.2e-21  Score=165.71  Aligned_cols=155  Identities=24%  Similarity=0.385  Sum_probs=139.5

Q ss_pred             cEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCC-CCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCC
Q psy8550         139 QRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPI-RGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGN  217 (332)
Q Consensus       139 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n  217 (332)
                      +.++++++.++.+|..+.  ..+++|++++|.++.+++ ..|..+++|++|++++|.++++.+.+|.++++|++|++++|
T Consensus        14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            578999999999987553  467899999999999854 56889999999999999999998889999999999999999


Q ss_pred             CCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccC
Q psy8550         218 FLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA  295 (332)
Q Consensus       218 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  295 (332)
                      .++.+++..|..+++|++|++++|.++.+.+..|..+++|+.|++++|.++++++..|..+++|+.|++++|++....
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  169 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC  169 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence            999999988899999999999999999998888999999999999999999998888999999999999999987543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.87  E-value=3.7e-21  Score=187.76  Aligned_cols=237  Identities=23%  Similarity=0.251  Sum_probs=169.5

Q ss_pred             CCCCCCCCCC---ccCCchhhHhhhhccchhhhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy8550          35 HPGFQNNPKS---NFKSPTEILKSLLIIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDC  111 (332)
Q Consensus        35 ~~g~~~~p~~---~~~~~~~~~~~l~~iP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~c  111 (332)
                      ..++..+|..   .++.+.+....+..+|.   .+.+|+.|++++|.++..+                         .  
T Consensus        49 ~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp-------------------------~--   98 (622)
T 3g06_A           49 ESGLTTLPDCLPAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLP-------------------------V--   98 (622)
T ss_dssp             SSCCSCCCSCCCTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCC-------------------------C--
T ss_pred             CCCcCccChhhCCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCC-------------------------C--
Confidence            3344455532   34555555566677777   4677777778777665432                         2  


Q ss_pred             cccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCC----------
Q psy8550         112 DCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEP----------  181 (332)
Q Consensus       112 ~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~----------  181 (332)
                       ....+..+++.++.+..+|. ..++++.|++++|.++.+|..   +++|++|++++|.++.++. .+..          
T Consensus        99 -~l~~L~~L~Ls~N~l~~l~~-~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~-~~~~L~~L~L~~N~  172 (622)
T 3g06_A           99 -LPPGLLELSIFSNPLTHLPA-LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA-LPSELCKLWAYNNQ  172 (622)
T ss_dssp             -CCTTCCEEEECSCCCCCCCC-CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSC
T ss_pred             -CCCCCCEEECcCCcCCCCCC-CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC-ccCCCCEEECCCCC
Confidence             22446678888888888887 567888888888888888763   4788888888888877652 2211          


Q ss_pred             -------CCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCC
Q psy8550         182 -------QEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGL  254 (332)
Q Consensus       182 -------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  254 (332)
                             +++|+.|++++|.++++++    .+++|+.|++++|.++.+|..    +++|+.|++++|.++.++    ..+
T Consensus       173 l~~l~~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l~~~----~~~L~~L~Ls~N~L~~lp----~~l  240 (622)
T 3g06_A          173 LTSLPMLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLPAL----PSGLKELIVSGNRLTSLP----VLP  240 (622)
T ss_dssp             CSCCCCCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCCC----CTTCCEEECCSSCCSCCC----CCC
T ss_pred             CCCCcccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCcccccCCC----CCCCCEEEccCCccCcCC----CCC
Confidence                   1445555555555555432    134566666666666655532    378999999999999875    456


Q ss_pred             CCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCccccccc
Q psy8550         255 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMA  324 (332)
Q Consensus       255 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~  324 (332)
                      ++|+.|++++|.++.++.    .+++|+.|++++|+++.++ ..+.++++|+.|++++|.+++..+..+.
T Consensus       241 ~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp-~~l~~l~~L~~L~L~~N~l~~~~~~~l~  305 (622)
T 3g06_A          241 SELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLP-ESLIHLSSETTVNLEGNPLSERTLQALR  305 (622)
T ss_dssp             TTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSCC-GGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred             CcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcCC-HHHhhccccCEEEecCCCCCCcCHHHHH
Confidence            899999999999999886    5789999999999999775 4799999999999999999988777654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.86  E-value=9.4e-21  Score=162.79  Aligned_cols=155  Identities=30%  Similarity=0.354  Sum_probs=130.3

Q ss_pred             ccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCC
Q psy8550         138 IQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGN  217 (332)
Q Consensus       138 L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n  217 (332)
                      -+.++.+++.++.+|..+.  ++|++|++++|.++.+.+..|..+++|++|++++|+++.+++..|.++++|++|+|++|
T Consensus        21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence            3567888888888887543  78899999999998888888888899999999999988888788888889999999999


Q ss_pred             CCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccC
Q psy8550         218 FLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA  295 (332)
Q Consensus       218 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  295 (332)
                      .++.+++..|..+++|+.|++++|.++.++ ..+..+++|++|++++|.++++++..+..+++|+.|++++|++....
T Consensus        99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A           99 QLTVLPSAVFDRLVHLKELFMCCNKLTELP-RGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCSCC-TTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             cCCccChhHhCcchhhCeEeccCCcccccC-cccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            988888887888888999999988888774 44677888888888888888888877888888888888888887654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.85  E-value=7.3e-22  Score=173.32  Aligned_cols=173  Identities=23%  Similarity=0.310  Sum_probs=129.0

Q ss_pred             CCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEcc
Q psy8550         136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLR  215 (332)
Q Consensus       136 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  215 (332)
                      .++..++++++.++.++ .+..+++|++|++++|.+..++  .+..+++|++|++++|+++++++  +.++++|++|+++
T Consensus        19 ~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~   93 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred             HHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence            44566667777777766 4667778888888888877765  56777888888888888887755  7778888888888


Q ss_pred             CCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccC
Q psy8550         216 GNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA  295 (332)
Q Consensus       216 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  295 (332)
                      +|.++.+++.  .. ++|+.|++++|.++.++  .+..+++|+.|++++|++++++  .++.+++|+.|++++|++++. 
T Consensus        94 ~N~l~~l~~~--~~-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~-  165 (263)
T 1xeu_A           94 RNRLKNLNGI--PS-ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT-  165 (263)
T ss_dssp             SSCCSCCTTC--CC-SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC-
T ss_pred             CCccCCcCcc--cc-CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch-
Confidence            8888777653  23 77888888888887763  3777788888888888887774  477778888888888888777 


Q ss_pred             chhcCCCCCCCEEEccCCCCCCccccc
Q psy8550         296 DGAFNGLGRLSALDLRGAGLTNMMGHS  322 (332)
Q Consensus       296 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~  322 (332)
                       ..+..+++|+.|++++|+++..+...
T Consensus       166 -~~l~~l~~L~~L~l~~N~~~~~~~~~  191 (263)
T 1xeu_A          166 -GGLTRLKKVNWIDLTGQKCVNEPVKY  191 (263)
T ss_dssp             -TTSTTCCCCCEEEEEEEEEECCCEEC
T ss_pred             -HHhccCCCCCEEeCCCCcccCCcccc
Confidence             45777788888888888777665443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.85  E-value=5.1e-21  Score=186.47  Aligned_cols=173  Identities=31%  Similarity=0.416  Sum_probs=101.8

Q ss_pred             CCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEcc
Q psy8550         136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLR  215 (332)
Q Consensus       136 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  215 (332)
                      ++|+.|++++|.+..++ .+..+++|+.|++++|.+..+++  +..+++|+.|+|++|.+..++  .+..+++|+.|+|+
T Consensus        43 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls  117 (605)
T 1m9s_A           43 NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS--SLKDLKKLKSLSLE  117 (605)
T ss_dssp             TTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT--TSTTCTTCCEEECT
T ss_pred             CCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh--hhccCCCCCEEEec
Confidence            34555666666666554 35556666666666666665553  555666666666666665542  45566666666666


Q ss_pred             CCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccC
Q psy8550         216 GNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA  295 (332)
Q Consensus       216 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  295 (332)
                      +|.+..++.  +..+++|+.|+|++|.++.+  ..+..+++|+.|+|++|.+.++++  +..+++|+.|+|++|++++++
T Consensus       118 ~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~  191 (605)
T 1m9s_A          118 HNGISDING--LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR  191 (605)
T ss_dssp             TSCCCCCGG--GGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG
T ss_pred             CCCCCCCcc--ccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCCh
Confidence            666665532  45566666666666666655  235556666666666666665554  555666666666666666542


Q ss_pred             chhcCCCCCCCEEEccCCCCCCcccc
Q psy8550         296 DGAFNGLGRLSALDLRGAGLTNMMGH  321 (332)
Q Consensus       296 ~~~~~~l~~L~~L~Ls~n~l~~l~~~  321 (332)
                        .+..+++|+.|+|++|++...+..
T Consensus       192 --~l~~l~~L~~L~L~~N~l~~~p~~  215 (605)
T 1m9s_A          192 --ALAGLKNLDVLELFSQECLNKPIN  215 (605)
T ss_dssp             --GGTTCTTCSEEECCSEEEECCCCC
T ss_pred             --HHccCCCCCEEEccCCcCcCCccc
Confidence              355666666666666665554443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.85  E-value=1.3e-20  Score=157.48  Aligned_cols=137  Identities=32%  Similarity=0.517  Sum_probs=108.6

Q ss_pred             CCCCCCcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh--hhcCCCCCcEEEeecCcCcccCCCCCCCCC
Q psy8550         106 FCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS--AIQFYSSLQHVDLSHNQLVNIPIRGFEPQE  183 (332)
Q Consensus       106 ~~p~~c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~  183 (332)
                      .||..|.|..  ..++|.++.++.+|..++.++++|++++|.++.+++  .+..+++|++|++++|.++.+.+..|..++
T Consensus         1 ~CP~~C~C~~--~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~   78 (192)
T 1w8a_A            1 DCPAMCHCEG--TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS   78 (192)
T ss_dssp             CCCTTSEEET--TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT
T ss_pred             CcCCCCEECC--CEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcc
Confidence            4999999986  479999999999999888889999998888887775  377788888888888888877777777777


Q ss_pred             CCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCc
Q psy8550         184 KLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRIS  244 (332)
Q Consensus       184 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  244 (332)
                      +|++|++++|+++++++..|.++++|++|++++|.++.+++..+..+++|+.|++++|.+.
T Consensus        79 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           79 HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            8888888887777777777777777777777777777766666666777777777777665

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.84  E-value=1.8e-20  Score=171.19  Aligned_cols=210  Identities=18%  Similarity=0.193  Sum_probs=174.1

Q ss_pred             CCCceEEecCCCccccCCCC-C--CCccEEEeecCCCc-cchh-hhcCCCCCcE-EEeecCcCcccCCCCCCCCCCCcEE
Q psy8550         115 DETLVVTCKEANLDVIPITL-N--PSIQRLVLKYNRIK-TVDS-AIQFYSSLQH-VDLSHNQLVNIPIRGFEPQEKLVEL  188 (332)
Q Consensus       115 ~~~~~~~c~~~~l~~lp~~~-~--~~L~~L~l~~~~l~-~l~~-~~~~l~~L~~-L~l~~~~l~~~~~~~~~~l~~L~~L  188 (332)
                      .....++..++.++.+|.+. .  ++|++|++++|.+. .+|. .|.+++++++ +.+.+|++..+++..|..+++|++|
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  109 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence            34668999999999999754 3  79999999999975 5766 6788998876 5667789999999999999999999


Q ss_pred             EcCCCcccccCccccCCCCCCCEEEccC-CCCCCCCccccCCCC-CCcEeeccCCCCcccChhhcCCCCCCcEEeCC-CC
Q psy8550         189 QLNHNKLSSVNNKTFIGLKSLKVLNLRG-NFLEDLPDRLFAPLS-HLEELDLGQNRISRIDQACFEGLTALRILYLD-DN  265 (332)
Q Consensus       189 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n  265 (332)
                      ++++|++..+++..+....++..+++.+ +.+..+++..|..+. .++.|++++|+++.+++..+. ..+|+.+++. +|
T Consensus       110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~-~~~L~~l~l~~~n  188 (350)
T 4ay9_X          110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN-GTQLDELNLSDNN  188 (350)
T ss_dssp             EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSST-TEEEEEEECTTCT
T ss_pred             cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhcc-ccchhHHhhccCC
Confidence            9999999999888887888889999965 678888887777664 688999999999999877665 4689999997 58


Q ss_pred             CCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCC-CCCCcccccccCCCCcc
Q psy8550         266 QLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGA-GLTNMMGHSMALGDYLH  330 (332)
Q Consensus       266 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~~l~~L~  330 (332)
                      .++.+++..|+.+++|+.|++++|+++.+++..+.   +|+.|.+.++ .++.+|+  +..+..|+
T Consensus       189 ~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP~--l~~l~~L~  249 (350)
T 4ay9_X          189 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLPT--LEKLVALM  249 (350)
T ss_dssp             TCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCCCCCC--TTTCCSCC
T ss_pred             cccCCCHHHhccCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcCcCCC--chhCcChh
Confidence            89999998999999999999999999999886555   4556665554 6777774  55555554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.84  E-value=3.2e-20  Score=165.24  Aligned_cols=176  Identities=24%  Similarity=0.336  Sum_probs=152.7

Q ss_pred             EeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCC
Q psy8550         142 VLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLED  221 (332)
Q Consensus       142 ~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  221 (332)
                      .+..+.++.+. .+..+++|++|++++|.+..++  .+..+++|++|++++|+++++.+  +.++++|++|++++|.++.
T Consensus        30 ~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~  104 (291)
T 1h6t_A           30 NLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD  104 (291)
T ss_dssp             HTTCSCTTSEE-CHHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred             HhcCCCccccc-chhhcCcccEEEccCCCcccCh--hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC
Confidence            34444555432 2456789999999999999885  48889999999999999999866  8999999999999999998


Q ss_pred             CCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCC
Q psy8550         222 LPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNG  301 (332)
Q Consensus       222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  301 (332)
                      ++.  +..+++|+.|++++|.++.+  ..+..+++|+.|++++|.++++  ..++.+++|+.|++++|+++++++  +..
T Consensus       105 ~~~--l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~  176 (291)
T 1h6t_A          105 LSS--LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAG  176 (291)
T ss_dssp             GGG--GTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred             Chh--hccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcC
Confidence            765  78999999999999999987  3478899999999999999998  368899999999999999999877  899


Q ss_pred             CCCCCEEEccCCCCCCcccccccCCCCcccC
Q psy8550         302 LGRLSALDLRGAGLTNMMGHSMALGDYLHWI  332 (332)
Q Consensus       302 l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~l  332 (332)
                      +++|+.|++++|++++++.  +..++.|+.|
T Consensus       177 l~~L~~L~L~~N~i~~l~~--l~~l~~L~~L  205 (291)
T 1h6t_A          177 LTKLQNLYLSKNHISDLRA--LAGLKNLDVL  205 (291)
T ss_dssp             CTTCCEEECCSSCCCBCGG--GTTCTTCSEE
T ss_pred             CCccCEEECCCCcCCCChh--hccCCCCCEE
Confidence            9999999999999999864  7888887653

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.83  E-value=8.2e-20  Score=176.35  Aligned_cols=170  Identities=23%  Similarity=0.309  Sum_probs=146.1

Q ss_pred             CCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEcc
Q psy8550         136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLR  215 (332)
Q Consensus       136 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  215 (332)
                      .+++.|++++|.++.+|..+  .++|++|++++|.++.++    ..+++|++|++++|+++++++  +.+  +|++|+++
T Consensus        59 ~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls  128 (571)
T 3cvr_A           59 NQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVD  128 (571)
T ss_dssp             TTCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECC
T ss_pred             CCccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch--hhc--CCCEEECC
Confidence            37899999999999998865  379999999999999877    447899999999999999754  655  99999999


Q ss_pred             CCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccC
Q psy8550         216 GNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA  295 (332)
Q Consensus       216 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  295 (332)
                      +|.++.+|+    .+++|+.|++++|.++.++.    .+++|+.|++++|.++++|.  +.  ++|+.|++++|.++.++
T Consensus       129 ~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp  196 (571)
T 3cvr_A          129 NNQLTMLPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESLP  196 (571)
T ss_dssp             SSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSCC
T ss_pred             CCcCCCCCC----cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCchh
Confidence            999999887    47899999999999999754    57899999999999999887  55  89999999999999777


Q ss_pred             chhcCCCCCC-------CEEEccCCCCCCcccccccCCCCcccC
Q psy8550         296 DGAFNGLGRL-------SALDLRGAGLTNMMGHSMALGDYLHWI  332 (332)
Q Consensus       296 ~~~~~~l~~L-------~~L~Ls~n~l~~l~~~~~~~l~~L~~l  332 (332)
                      +  +..  +|       +.|+|++|+|+.+|+..+. +++|+.|
T Consensus       197 ~--~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~-l~~L~~L  235 (571)
T 3cvr_A          197 A--VPV--RNHHSEETEIFFRCRENRITHIPENILS-LDPTCTI  235 (571)
T ss_dssp             C--CC----------CCEEEECCSSCCCCCCGGGGG-SCTTEEE
T ss_pred             h--HHH--hhhcccccceEEecCCCcceecCHHHhc-CCCCCEE
Confidence            6  554  77       9999999999999886665 7777643

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.83  E-value=7.5e-20  Score=150.64  Aligned_cols=138  Identities=31%  Similarity=0.518  Sum_probs=112.9

Q ss_pred             CCCCCcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCCCCC
Q psy8550         107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKL  185 (332)
Q Consensus       107 ~p~~c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L  185 (332)
                      ||..|.|..  ..+.|.++.+..+|..++++++.|++++|.++.+++ .+..+++|++|++++|.++.+++..|..+++|
T Consensus         1 Cp~~C~C~~--~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L   78 (177)
T 2o6r_A            1 CPSRCSCSG--TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL   78 (177)
T ss_dssp             CCTTCEEET--TEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CcCCCEeCC--CEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCcc
Confidence            899999964  479999999999998888889999999888887776 56788888888888888888877777888888


Q ss_pred             cEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCccc
Q psy8550         186 VELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRI  246 (332)
Q Consensus       186 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  246 (332)
                      ++|++++|.++++++..|.++++|++|++++|.++.+++..+..+++|+.|++++|.+...
T Consensus        79 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           79 TILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            8888888888887777777788888888888888877777667777788888887776644

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.82  E-value=8e-22  Score=182.43  Aligned_cols=249  Identities=16%  Similarity=0.119  Sum_probs=187.6

Q ss_pred             hHhhhhccchhhhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCcccCCCceEEecCCCccc--
Q psy8550          52 ILKSLLIIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKEANLDV--  129 (332)
Q Consensus        52 ~~~~l~~iP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~c~c~~~~~~~~c~~~~l~~--  129 (332)
                      ....+..++..+..+.+|+.|.+++|.+.......+..             ..       .....++.++..++.+..  
T Consensus        17 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~-------------~l-------~~~~~L~~L~Ls~~~~~~l~   76 (386)
T 2ca6_A           17 TTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSE-------------NI-------ASKKDLEIAEFSDIFTGRVK   76 (386)
T ss_dssp             CSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHH-------------TT-------TTCTTCCEEECCSCCTTSCG
T ss_pred             CHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHH-------------HH-------HhCCCccEEeCcccccCccc
Confidence            33566889999999999999999999887654322110             00       112345567777654443  


Q ss_pred             --cCCCC---------CCCccEEEeecCCCcc-----chhhhcCCCCCcEEEeecCcCcccCCCCCC----CC-------
Q psy8550         130 --IPITL---------NPSIQRLVLKYNRIKT-----VDSAIQFYSSLQHVDLSHNQLVNIPIRGFE----PQ-------  182 (332)
Q Consensus       130 --lp~~~---------~~~L~~L~l~~~~l~~-----l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~----~l-------  182 (332)
                        +|.++         .++|++|++++|.++.     ++..+..+++|++|++++|.+....+..+.    .+       
T Consensus        77 ~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~  156 (386)
T 2ca6_A           77 DEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAK  156 (386)
T ss_dssp             GGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcc
Confidence              23222         2799999999999986     777899999999999999998754433333    23       


Q ss_pred             --CCCcEEEcCCCccccc-Cc---cccCCCCCCCEEEccCCCCCC-----CCccccCCCCCCcEeeccCCCCc----ccC
Q psy8550         183 --EKLVELQLNHNKLSSV-NN---KTFIGLKSLKVLNLRGNFLED-----LPDRLFAPLSHLEELDLGQNRIS----RID  247 (332)
Q Consensus       183 --~~L~~L~l~~n~l~~~-~~---~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~----~~~  247 (332)
                        ++|++|++++|+++.. .+   ..+..+++|++|++++|.++.     +.+..+..+++|+.|++++|.++    ...
T Consensus       157 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l  236 (386)
T 2ca6_A          157 NAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL  236 (386)
T ss_dssp             TCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred             cCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHH
Confidence              8999999999999732 23   456778999999999999872     33324678899999999999995    333


Q ss_pred             hhhcCCCCCCcEEeCCCCCCCCcC----cccc--cCCCCccEEEcCCCcCCc----cCchhc-CCCCCCCEEEccCCCCC
Q psy8550         248 QACFEGLTALRILYLDDNQLRSVP----TPSF--IYLGMLAELRVGLNVFTT----LADGAF-NGLGRLSALDLRGAGLT  316 (332)
Q Consensus       248 ~~~~~~l~~L~~L~L~~n~l~~~~----~~~~--~~l~~L~~L~L~~n~l~~----~~~~~~-~~l~~L~~L~Ls~n~l~  316 (332)
                      +..+..+++|+.|++++|.+++..    +..+  +.+++|+.|++++|.+++    ..+..+ .++++|+.|++++|.++
T Consensus       237 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          237 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence            567888999999999999998752    2344  348999999999999998    344455 67899999999999999


Q ss_pred             Cccc
Q psy8550         317 NMMG  320 (332)
Q Consensus       317 ~l~~  320 (332)
                      +..+
T Consensus       317 ~~~~  320 (386)
T 2ca6_A          317 EEDD  320 (386)
T ss_dssp             TTSH
T ss_pred             cchh
Confidence            8774

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.82  E-value=6.9e-20  Score=153.62  Aligned_cols=153  Identities=16%  Similarity=0.203  Sum_probs=93.8

Q ss_pred             CCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEe
Q psy8550         157 FYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEEL  236 (332)
Q Consensus       157 ~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  236 (332)
                      .+++|++|++++|.+..++  .+..+++|++|++++|.++.+  ..+..+++|++|++++|.++...+..++.+++|++|
T Consensus        42 ~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           42 QMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             hcCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            3445555555555555444  345555566666655554443  245566666666666666665333345666677777


Q ss_pred             eccCCCCcccChhhcCCCCCCcEEeCCCCC-CCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCC
Q psy8550         237 DLGQNRISRIDQACFEGLTALRILYLDDNQ-LRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGL  315 (332)
Q Consensus       237 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  315 (332)
                      ++++|.++...+..++.+++|++|++++|. ++.++  .+..+++|+.|++++|++++++  .+..+++|+.|++++|++
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC--
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCccc
Confidence            777777666555666677777777777776 66654  4666777777777777777654  466777777777777776


Q ss_pred             CC
Q psy8550         316 TN  317 (332)
Q Consensus       316 ~~  317 (332)
                      ..
T Consensus       194 ~~  195 (197)
T 4ezg_A          194 GG  195 (197)
T ss_dssp             --
T ss_pred             CC
Confidence            53

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.82  E-value=1.1e-19  Score=152.43  Aligned_cols=151  Identities=16%  Similarity=0.202  Sum_probs=132.8

Q ss_pred             CCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEcc
Q psy8550         136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLR  215 (332)
Q Consensus       136 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  215 (332)
                      ++++.|++++|.++.+| .+..+++|++|++++|.+..++  .+..+++|++|++++|.+++..+..+.++++|++|+++
T Consensus        44 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls  120 (197)
T 4ezg_A           44 NSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS  120 (197)
T ss_dssp             HTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred             CCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence            67899999999999988 6899999999999999877664  68889999999999999998778889999999999999


Q ss_pred             CCCCCCCCccccCCCCCCcEeeccCCC-CcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCc
Q psy8550         216 GNFLEDLPDRLFAPLSHLEELDLGQNR-ISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTT  293 (332)
Q Consensus       216 ~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  293 (332)
                      +|.++...+..++.+++|++|++++|. ++.++  .+..+++|+.|++++|.+++++  .+..+++|+.|++++|++.+
T Consensus       121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC----
T ss_pred             CCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccCC
Confidence            999998666667999999999999998 87774  4888999999999999999977  58889999999999998864

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.82  E-value=5.8e-20  Score=166.36  Aligned_cols=211  Identities=19%  Similarity=0.185  Sum_probs=168.5

Q ss_pred             CCceEEecCCCcc--ccCCCCCCCccEEEeecCCCccchh-hhcC--------CCCCcEEEeecCcCcccCCCCCCCCCC
Q psy8550         116 ETLVVTCKEANLD--VIPITLNPSIQRLVLKYNRIKTVDS-AIQF--------YSSLQHVDLSHNQLVNIPIRGFEPQEK  184 (332)
Q Consensus       116 ~~~~~~c~~~~l~--~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~--------l~~L~~L~l~~~~l~~~~~~~~~~l~~  184 (332)
                      .+..++.+++.+.  ..+....+.+..+.+..+   .+|+ .|.+        +++|+++++.+ .++.|...+|.++++
T Consensus        50 ~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~  125 (329)
T 3sb4_A           50 SLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDN  125 (329)
T ss_dssp             TCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTT
T ss_pred             cCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcc
Confidence            3445666666655  333222223333444333   5555 6777        99999999999 899999999999999


Q ss_pred             CcEEEcCCCcccccCccccCCCCCCCEEEccCCC----CCCCCcccc---------------------------------
Q psy8550         185 LVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNF----LEDLPDRLF---------------------------------  227 (332)
Q Consensus       185 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~~~~---------------------------------  227 (332)
                      |+.++++.|.+..+.+.+|.++.++..+....+.    ...+....|                                 
T Consensus       126 L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~  205 (329)
T 3sb4_A          126 LKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDIN  205 (329)
T ss_dssp             CCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCS
T ss_pred             cceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccc
Confidence            9999999999999999999988777777665521    111111111                                 


Q ss_pred             -----------------CCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCcc-EEEcCCC
Q psy8550         228 -----------------APLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLA-ELRVGLN  289 (332)
Q Consensus       228 -----------------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~L~~n  289 (332)
                                       ..+++|+.+++++|.++.++..+|.++++|+.+++.+| +..++..+|.++.+|+ .+++.+ 
T Consensus       206 ~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-  283 (329)
T 3sb4_A          206 FLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-  283 (329)
T ss_dssp             EEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-
T ss_pred             eEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-
Confidence                             02689999999999999999999999999999999998 9999999999999999 999998 


Q ss_pred             cCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCcccC
Q psy8550         290 VFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHWI  332 (332)
Q Consensus       290 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~l  332 (332)
                      .++.+.+.+|.++++|+.+++++|+++.+++.+|..+++|+.+
T Consensus       284 ~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l  326 (329)
T 3sb4_A          284 SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI  326 (329)
T ss_dssp             TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred             cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence            8999999999999999999999999999999999999999864

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.80  E-value=6.5e-20  Score=178.64  Aligned_cols=181  Identities=24%  Similarity=0.330  Sum_probs=157.4

Q ss_pred             CccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccC
Q psy8550         137 SIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRG  216 (332)
Q Consensus       137 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~  216 (332)
                      .+..+.+..+.+..+.. +..+.+|+.|++++|.+..++  .+..+++|+.|+|++|.+.++++  +..+++|+.|+|++
T Consensus        22 ~l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~   96 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE   96 (605)
T ss_dssp             HHHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred             HHHHHhccCCCcccccc-hhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence            44455566666665543 567889999999999999886  58899999999999999999876  88999999999999


Q ss_pred             CCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCc
Q psy8550         217 NFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD  296 (332)
Q Consensus       217 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  296 (332)
                      |.+..++.  +..+++|+.|+|++|.+..++  .+..+++|+.|+|++|.++++  ..++.+++|+.|+|++|.++++++
T Consensus        97 N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~  170 (605)
T 1m9s_A           97 NKIKDLSS--LKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP  170 (605)
T ss_dssp             SCCCCCTT--STTCTTCCEEECTTSCCCCCG--GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred             CCCCCChh--hccCCCCCEEEecCCCCCCCc--cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence            99998874  789999999999999999873  388899999999999999998  368899999999999999999887


Q ss_pred             hhcCCCCCCCEEEccCCCCCCcccccccCCCCcccC
Q psy8550         297 GAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHWI  332 (332)
Q Consensus       297 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~l  332 (332)
                        +..+++|+.|+|++|++++++  .+..++.|+.|
T Consensus       171 --l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L  202 (605)
T 1m9s_A          171 --LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVL  202 (605)
T ss_dssp             --GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEE
T ss_pred             --hccCCCCCEEECcCCCCCCCh--HHccCCCCCEE
Confidence              899999999999999999984  57888887653

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.79  E-value=4.1e-19  Score=155.74  Aligned_cols=150  Identities=24%  Similarity=0.338  Sum_probs=133.0

Q ss_pred             CCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEcc
Q psy8550         136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLR  215 (332)
Q Consensus       136 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  215 (332)
                      ++++.|++++|.++.++ .+..+++|++|++++|.++.+++  +..+++|++|++++|+++++++  +.. ++|++|+++
T Consensus        41 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~--~~~-~~L~~L~L~  114 (263)
T 1xeu_A           41 SGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNG--IPS-ACLSRLFLD  114 (263)
T ss_dssp             TTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTT--CCC-SSCCEEECC
T ss_pred             CcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCc--ccc-CcccEEEcc
Confidence            78999999999999987 68899999999999999999875  8899999999999999999854  333 899999999


Q ss_pred             CCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccC
Q psy8550         216 GNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA  295 (332)
Q Consensus       216 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  295 (332)
                      +|.++.++.  +..+++|+.|++++|++++++  .+..+++|+.|++++|.++++  ..+..+++|+.|++++|+++..+
T Consensus       115 ~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          115 NNELRDTDS--LIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             SSCCSBSGG--GTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred             CCccCCChh--hcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence            999998854  788999999999999999884  488899999999999999988  46888999999999999998776


Q ss_pred             ch
Q psy8550         296 DG  297 (332)
Q Consensus       296 ~~  297 (332)
                      ..
T Consensus       189 ~~  190 (263)
T 1xeu_A          189 VK  190 (263)
T ss_dssp             EE
T ss_pred             cc
Confidence            53

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.79  E-value=3.4e-20  Score=170.07  Aligned_cols=206  Identities=21%  Similarity=0.178  Sum_probs=140.3

Q ss_pred             CCceEEecCCCccccCC--------CCCCCccEEEeecCCCccc-hhhhcCC-----CCCcEEEeecCcCcccCCCC---
Q psy8550         116 ETLVVTCKEANLDVIPI--------TLNPSIQRLVLKYNRIKTV-DSAIQFY-----SSLQHVDLSHNQLVNIPIRG---  178 (332)
Q Consensus       116 ~~~~~~c~~~~l~~lp~--------~~~~~L~~L~l~~~~l~~l-~~~~~~l-----~~L~~L~l~~~~l~~~~~~~---  178 (332)
                      ....++..++.+...+.        ..+.++++|++++|.++.. +..+..+     ++|++|++++|.++...+..   
T Consensus        23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~  102 (362)
T 3goz_A           23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK  102 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence            35678888887776663        1223788888888888754 3345443     88888888888887766443   


Q ss_pred             -CCCC-CCCcEEEcCCCcccccCcccc----CC-CCCCCEEEccCCCCCCCCccc----cCCCC-CCcEeeccCCCCccc
Q psy8550         179 -FEPQ-EKLVELQLNHNKLSSVNNKTF----IG-LKSLKVLNLRGNFLEDLPDRL----FAPLS-HLEELDLGQNRISRI  246 (332)
Q Consensus       179 -~~~l-~~L~~L~l~~n~l~~~~~~~~----~~-l~~L~~L~L~~n~l~~~~~~~----~~~l~-~L~~L~L~~n~l~~~  246 (332)
                       +..+ ++|++|++++|.++...+..+    .. .++|++|++++|.++......    +...+ +|++|++++|.++..
T Consensus       103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~  182 (362)
T 3goz_A          103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK  182 (362)
T ss_dssp             HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred             HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchh
Confidence             3333 788888888888887765443    33 258888888888887544322    23343 788888888888777


Q ss_pred             Chhh----cCCC-CCCcEEeCCCCCCCCcCcc----cccC-CCCccEEEcCCCcCCccCc----hhcCCCCCCCEEEccC
Q psy8550         247 DQAC----FEGL-TALRILYLDDNQLRSVPTP----SFIY-LGMLAELRVGLNVFTTLAD----GAFNGLGRLSALDLRG  312 (332)
Q Consensus       247 ~~~~----~~~l-~~L~~L~L~~n~l~~~~~~----~~~~-l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~Ls~  312 (332)
                      .+..    +... ++|++|++++|.+++....    .+.. .++|+.|++++|.+++..+    ..+..+++|++|++++
T Consensus       183 ~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~  262 (362)
T 3goz_A          183 NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDY  262 (362)
T ss_dssp             CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEH
T ss_pred             hHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEecc
Confidence            6543    3344 4888888888888773221    3333 4588888888888887654    3456678888888888


Q ss_pred             CCCCCcccc
Q psy8550         313 AGLTNMMGH  321 (332)
Q Consensus       313 n~l~~l~~~  321 (332)
                      |.+..+.+.
T Consensus       263 n~l~~i~~~  271 (362)
T 3goz_A          263 DIVKNMSKE  271 (362)
T ss_dssp             HHHTTCCHH
T ss_pred             CCccccCHH
Confidence            886666654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.77  E-value=7.7e-22  Score=191.03  Aligned_cols=192  Identities=21%  Similarity=0.242  Sum_probs=155.0

Q ss_pred             CCccEEEeecCCCccchhhhcCCCCCcEEEeecCc-------------CcccCCCCCCCCCCCcEEE-cCCCcccccCcc
Q psy8550         136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQ-------------LVNIPIRGFEPQEKLVELQ-LNHNKLSSVNNK  201 (332)
Q Consensus       136 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~-------------l~~~~~~~~~~l~~L~~L~-l~~n~l~~~~~~  201 (332)
                      ++++.|++++|.++.+|+.++.+++|++|++++|.             ..+..+..++.+++|+.|+ ++.|.+..+...
T Consensus       349 ~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l  428 (567)
T 1dce_A          349 EQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK  428 (567)
T ss_dssp             TTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             ccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhh
Confidence            67889999999999999999999999999987664             3444455667777888887 555433222110


Q ss_pred             -----ccCC--CCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCccc
Q psy8550         202 -----TFIG--LKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPS  274 (332)
Q Consensus       202 -----~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  274 (332)
                           .+..  ...|+.|++++|.++.+|.  ++.+++|+.|++++|.++.+ |..++.+++|+.|++++|.++++|  .
T Consensus       429 ~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~lp--~  503 (567)
T 1dce_A          429 FLLENSVLKMEYADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALENVD--G  503 (567)
T ss_dssp             HHHHHHHHHHHHTTCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCCCG--G
T ss_pred             hhhcccccccCccCceEEEecCCCCCCCcC--ccccccCcEeecCccccccc-chhhhcCCCCCEEECCCCCCCCCc--c
Confidence                 0100  1258999999999999886  78899999999999999977 557899999999999999999976  6


Q ss_pred             ccCCCCccEEEcCCCcCCccC-chhcCCCCCCCEEEccCCCCCCccccc---ccCCCCcccC
Q psy8550         275 FIYLGMLAELRVGLNVFTTLA-DGAFNGLGRLSALDLRGAGLTNMMGHS---MALGDYLHWI  332 (332)
Q Consensus       275 ~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~l~~~~---~~~l~~L~~l  332 (332)
                      ++.+++|+.|++++|++++.+ |..++++++|+.|+|++|.++++++..   +..++.|+.|
T Consensus       504 l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L  565 (567)
T 1dce_A          504 VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  565 (567)
T ss_dssp             GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             cCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence            899999999999999999997 789999999999999999999988743   4446666643

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.77  E-value=1.3e-19  Score=164.20  Aligned_cols=197  Identities=18%  Similarity=0.168  Sum_probs=135.1

Q ss_pred             CceEEecCCCccccCCCCC--CCccEEEeecCCCcc--chhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCC
Q psy8550         117 TLVVTCKEANLDVIPITLN--PSIQRLVLKYNRIKT--VDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNH  192 (332)
Q Consensus       117 ~~~~~c~~~~l~~lp~~~~--~~L~~L~l~~~~l~~--l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~  192 (332)
                      ...+.+.++.+...+..+.  +++++|++++|.++.  ++..+..+++|++|++++|.+....+..++.+++|++|++++
T Consensus        72 l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~  151 (336)
T 2ast_B           72 VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG  151 (336)
T ss_dssp             CSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred             ceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCC
Confidence            4456666666665544433  778888888887763  666778888888888888887755556677788888888888


Q ss_pred             C-ccccc-CccccCCCCCCCEEEccCC-CCCCC-CccccCCCC-CCcEeeccCCC--Cc-ccChhhcCCCCCCcEEeCCC
Q psy8550         193 N-KLSSV-NNKTFIGLKSLKVLNLRGN-FLEDL-PDRLFAPLS-HLEELDLGQNR--IS-RIDQACFEGLTALRILYLDD  264 (332)
Q Consensus       193 n-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~-~L~~L~L~~n~--l~-~~~~~~~~~l~~L~~L~L~~  264 (332)
                      | .+++. .+..+.++++|++|++++| .++.. .+..+..++ +|++|++++|.  ++ ...+..+..+++|+.|++++
T Consensus       152 ~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~  231 (336)
T 2ast_B          152 CSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD  231 (336)
T ss_dssp             CBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTT
T ss_pred             CCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCC
Confidence            7 56642 3455667788888888888 77642 133346677 88888888883  43 22244556678888888888


Q ss_pred             CC-CCCcCcccccCCCCccEEEcCCCc-CCccCchhcCCCCCCCEEEccCC
Q psy8550         265 NQ-LRSVPTPSFIYLGMLAELRVGLNV-FTTLADGAFNGLGRLSALDLRGA  313 (332)
Q Consensus       265 n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n  313 (332)
                      |. +++.....++.+++|+.|++++|. +.......+.++++|+.|++++|
T Consensus       232 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          232 SVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             CTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            87 555444467777888888888884 32222225677788888888877

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.77  E-value=9.5e-20  Score=167.13  Aligned_cols=203  Identities=18%  Similarity=0.204  Sum_probs=107.0

Q ss_pred             CCceEEecCCCccccCC-C-------CCCCccEEEeecCCCccchh-h----hcCC-CCCcEEEeecCcCcccCCCCC--
Q psy8550         116 ETLVVTCKEANLDVIPI-T-------LNPSIQRLVLKYNRIKTVDS-A----IQFY-SSLQHVDLSHNQLVNIPIRGF--  179 (332)
Q Consensus       116 ~~~~~~c~~~~l~~lp~-~-------~~~~L~~L~l~~~~l~~l~~-~----~~~l-~~L~~L~l~~~~l~~~~~~~~--  179 (332)
                      ....++..++.+..... .       .++++++|++++|.++..+. .    +..+ ++|++|++++|.++...+..+  
T Consensus        52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  131 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ  131 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence            34456666665554321 1       12556666666666663332 2    3333 566666666666665543322  


Q ss_pred             --CC-CCCCcEEEcCCCcccccCc----cccCCCC-CCCEEEccCCCCCCCCcccc----CCC-CCCcEeeccCCCCccc
Q psy8550         180 --EP-QEKLVELQLNHNKLSSVNN----KTFIGLK-SLKVLNLRGNFLEDLPDRLF----APL-SHLEELDLGQNRISRI  246 (332)
Q Consensus       180 --~~-l~~L~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~----~~l-~~L~~L~L~~n~l~~~  246 (332)
                        .. .++|++|++++|.++....    ..+..++ +|++|++++|.++...+..+    ... ++|++|++++|.++..
T Consensus       132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~  211 (362)
T 3goz_A          132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLK  211 (362)
T ss_dssp             HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred             HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChh
Confidence              22 2466666666666664332    2223333 66666666666665554222    223 3666666666666652


Q ss_pred             Ch----hhcCC-CCCCcEEeCCCCCCCCcCc----ccccCCCCccEEEcCCCcCCccCc-------hhcCCCCCCCEEEc
Q psy8550         247 DQ----ACFEG-LTALRILYLDDNQLRSVPT----PSFIYLGMLAELRVGLNVFTTLAD-------GAFNGLGRLSALDL  310 (332)
Q Consensus       247 ~~----~~~~~-l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~-------~~~~~l~~L~~L~L  310 (332)
                      ..    ..+.. .++|++|++++|.+++.+.    ..+..+++|+.|++++|.+.++.+       ..+..+++|+.||+
T Consensus       212 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL  291 (362)
T 3goz_A          212 SYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDK  291 (362)
T ss_dssp             CHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECT
T ss_pred             HHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEec
Confidence            21    22322 2466666666666665543    223445666666666666444332       24455566666666


Q ss_pred             cCCCCCCc
Q psy8550         311 RGAGLTNM  318 (332)
Q Consensus       311 s~n~l~~l  318 (332)
                      ++|++...
T Consensus       292 ~~N~l~~~  299 (362)
T 3goz_A          292 NGKEIHPS  299 (362)
T ss_dssp             TSCBCCGG
T ss_pred             CCCcCCCc
Confidence            66666544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.77  E-value=5e-20  Score=166.84  Aligned_cols=216  Identities=19%  Similarity=0.084  Sum_probs=167.9

Q ss_pred             CceEEecCCCcccc--CCCCCCCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCccc-CCCCCCCCCCCcEEEcCCC
Q psy8550         117 TLVVTCKEANLDVI--PITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNI-PIRGFEPQEKLVELQLNHN  193 (332)
Q Consensus       117 ~~~~~c~~~~l~~l--p~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~~l~~L~~L~l~~n  193 (332)
                      +..++..++.+..-  .....++++.|++++|.+...++.+..+++|++|++++|.+... .+..+..+++|++|++++|
T Consensus        49 ~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~  128 (336)
T 2ast_B           49 WQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL  128 (336)
T ss_dssp             SSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC
T ss_pred             heeeccccccCCHHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCc
Confidence            45677776655410  00112789999999999997777778899999999999998753 3356788999999999999


Q ss_pred             cccccCccccCCCCCCCEEEccCC-CCCCC-CccccCCCCCCcEeeccCC-CCccc-ChhhcCCCC-CCcEEeCCCC--C
Q psy8550         194 KLSSVNNKTFIGLKSLKVLNLRGN-FLEDL-PDRLFAPLSHLEELDLGQN-RISRI-DQACFEGLT-ALRILYLDDN--Q  266 (332)
Q Consensus       194 ~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~-~L~~L~L~~n--~  266 (332)
                      .+++..+..+..+++|++|++++| .++.. .+..+..+++|++|++++| .++.. .+..+..++ +|++|++++|  .
T Consensus       129 ~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~  208 (336)
T 2ast_B          129 RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN  208 (336)
T ss_dssp             BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGG
T ss_pred             ccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCccc
Confidence            998877888999999999999999 67742 2334577899999999999 88863 255677889 9999999999  4


Q ss_pred             CC-CcCcccccCCCCccEEEcCCCc-CCccCchhcCCCCCCCEEEccCCC-CCCcccccccCCCCcccC
Q psy8550         267 LR-SVPTPSFIYLGMLAELRVGLNV-FTTLADGAFNGLGRLSALDLRGAG-LTNMMGHSMALGDYLHWI  332 (332)
Q Consensus       267 l~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~~l~~L~~l  332 (332)
                      ++ +..+..+..+++|+.|++++|. +++..+..+.++++|+.|++++|. +.......++.+++|+.|
T Consensus       209 ~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  277 (336)
T 2ast_B          209 LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTL  277 (336)
T ss_dssp             SCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             CCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEE
Confidence            54 2223366789999999999999 776666688999999999999996 333222357777777653

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.77  E-value=6.3e-19  Score=147.20  Aligned_cols=131  Identities=25%  Similarity=0.368  Sum_probs=115.4

Q ss_pred             cEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCC-CCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCC
Q psy8550         139 QRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIR-GFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGN  217 (332)
Q Consensus       139 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n  217 (332)
                      +.++++++.++.+|..+..  ++++|++++|.+..+++. .|..+++|++|++++|+++++.|..|.++++|++|++++|
T Consensus        11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            6789999999999875543  899999999999988864 4888999999999999999998889999999999999999


Q ss_pred             CCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcC
Q psy8550         218 FLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVP  271 (332)
Q Consensus       218 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  271 (332)
                      .++.+++..|..+++|++|++++|.++++.+..+..+++|++|++++|.+....
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  142 (192)
T 1w8a_A           89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence            999998888888999999999999999888888888999999999999887543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.76  E-value=5.8e-20  Score=169.89  Aligned_cols=216  Identities=17%  Similarity=0.120  Sum_probs=163.1

Q ss_pred             CCceEEecCCCcccc-----CCCC--CCCccEEEeecCCCc----cchhh-------hcCCCCCcEEEeecCcCccc---
Q psy8550         116 ETLVVTCKEANLDVI-----PITL--NPSIQRLVLKYNRIK----TVDSA-------IQFYSSLQHVDLSHNQLVNI---  174 (332)
Q Consensus       116 ~~~~~~c~~~~l~~l-----p~~~--~~~L~~L~l~~~~l~----~l~~~-------~~~l~~L~~L~l~~~~l~~~---  174 (332)
                      ....++..++.+...     +..+  .+++++|++++|.+.    .+|..       +..+++|++|++++|.+...   
T Consensus        33 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  112 (386)
T 2ca6_A           33 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE  112 (386)
T ss_dssp             CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHH
T ss_pred             CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHH
Confidence            355788888776642     2222  378999999997554    34443       47899999999999998872   


Q ss_pred             -CCCCCCCCCCCcEEEcCCCcccccCccccCC----C---------CCCCEEEccCCCCCC--CCc--cccCCCCCCcEe
Q psy8550         175 -PIRGFEPQEKLVELQLNHNKLSSVNNKTFIG----L---------KSLKVLNLRGNFLED--LPD--RLFAPLSHLEEL  236 (332)
Q Consensus       175 -~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----l---------~~L~~L~L~~n~l~~--~~~--~~~~~l~~L~~L  236 (332)
                       .+..+..+++|++|++++|.++...+..+..    +         ++|++|++++|.++.  ++.  ..+..+++|++|
T Consensus       113 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L  192 (386)
T 2ca6_A          113 PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV  192 (386)
T ss_dssp             HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEE
T ss_pred             HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEE
Confidence             2356778899999999999997654444433    3         899999999999973  331  245678899999


Q ss_pred             eccCCCCcc-----cChhhcCCCCCCcEEeCCCCCCC----CcCcccccCCCCccEEEcCCCcCCcc----Cchhc--CC
Q psy8550         237 DLGQNRISR-----IDQACFEGLTALRILYLDDNQLR----SVPTPSFIYLGMLAELRVGLNVFTTL----ADGAF--NG  301 (332)
Q Consensus       237 ~L~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~--~~  301 (332)
                      ++++|.++.     +.+..+..+++|+.|++++|.++    ...+..+..+++|+.|++++|.+++.    .+.++  +.
T Consensus       193 ~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~  272 (386)
T 2ca6_A          193 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLE  272 (386)
T ss_dssp             ECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCS
T ss_pred             ECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhcc
Confidence            999999883     33336788999999999999995    22334778899999999999999876    44556  44


Q ss_pred             CCCCCEEEccCCCCCC-----cccccccCCCCccc
Q psy8550         302 LGRLSALDLRGAGLTN-----MMGHSMALGDYLHW  331 (332)
Q Consensus       302 l~~L~~L~Ls~n~l~~-----l~~~~~~~l~~L~~  331 (332)
                      +++|+.|+|++|.++.     ++...+..++.|+.
T Consensus       273 ~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~  307 (386)
T 2ca6_A          273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF  307 (386)
T ss_dssp             SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCE
T ss_pred             CCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceE
Confidence            8999999999999998     65555466677664

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.76  E-value=2.9e-18  Score=139.79  Aligned_cols=137  Identities=23%  Similarity=0.320  Sum_probs=78.8

Q ss_pred             CCCCCccEEEeecCCCc--cchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCC
Q psy8550         133 TLNPSIQRLVLKYNRIK--TVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLK  210 (332)
Q Consensus       133 ~~~~~L~~L~l~~~~l~--~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  210 (332)
                      ..++++++|++++|.++  .+|..+..+++|++|++++|.++.+  ..+..+++|++|++++|.+++..|..+..+++|+
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   98 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT   98 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred             CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence            33456666666666666  5655556666666666666666655  4555566666666666666654454555556666


Q ss_pred             EEEccCCCCCCCCc-cccCCCCCCcEeeccCCCCcccCh---hhcCCCCCCcEEeCCCCCCCCcC
Q psy8550         211 VLNLRGNFLEDLPD-RLFAPLSHLEELDLGQNRISRIDQ---ACFEGLTALRILYLDDNQLRSVP  271 (332)
Q Consensus       211 ~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~~  271 (332)
                      +|++++|.++.++. ..+..+++|+.|++++|.++.+++   ..+..+++|+.|++++|.+..++
T Consensus        99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  163 (168)
T 2ell_A           99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP  163 (168)
T ss_dssp             EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred             EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence            66666666655542 334555555555555555555544   34555555555555555555444

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.75  E-value=3.6e-18  Score=139.28  Aligned_cols=137  Identities=25%  Similarity=0.199  Sum_probs=92.5

Q ss_pred             CCCcEEEcCCCccc-ccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEe
Q psy8550         183 EKLVELQLNHNKLS-SVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILY  261 (332)
Q Consensus       183 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  261 (332)
                      ++|+.|++++|.++ +..|..+..+++|++|++++|.++.+  ..+..+++|++|++++|.++...+..+..+++|+.|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            45666666666655 22244455666666666666666665  3356666777777777776664455555567777777


Q ss_pred             CCCCCCCCcCc-ccccCCCCccEEEcCCCcCCccCc---hhcCCCCCCCEEEccCCCCCCcccc
Q psy8550         262 LDDNQLRSVPT-PSFIYLGMLAELRVGLNVFTTLAD---GAFNGLGRLSALDLRGAGLTNMMGH  321 (332)
Q Consensus       262 L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~Ls~n~l~~l~~~  321 (332)
                      +++|.+++++. ..++.+++|+.|++++|++++.++   ..+..+++|+.|++++|.+..++..
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  165 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS  165 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence            77777777653 467777788888888888887776   5778888888888888888777653

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.75  E-value=2.1e-20  Score=176.47  Aligned_cols=263  Identities=17%  Similarity=0.149  Sum_probs=164.8

Q ss_pred             hccchhhhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCC----------CCcccCCCceEEecCCC
Q psy8550          57 LIIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPP----------DCDCNDETLVVTCKEAN  126 (332)
Q Consensus        57 ~~iP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----------~c~c~~~~~~~~c~~~~  126 (332)
                      ..+|..++.+.+|+.|++++|.+...........+.... .....-....|.-          .......++.++..++.
T Consensus       103 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~  181 (461)
T 1z7x_W          103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQ-CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND  181 (461)
T ss_dssp             HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTT-CCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred             HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCC-CcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence            367888999999999999998876543322111100000 0000000000100          00011344556666665


Q ss_pred             ccccCC-CC-------CCCccEEEeecCCCcc-----chhhhcCCCCCcEEEeecCcCcccC-----CCCCCCCCCCcEE
Q psy8550         127 LDVIPI-TL-------NPSIQRLVLKYNRIKT-----VDSAIQFYSSLQHVDLSHNQLVNIP-----IRGFEPQEKLVEL  188 (332)
Q Consensus       127 l~~lp~-~~-------~~~L~~L~l~~~~l~~-----l~~~~~~l~~L~~L~l~~~~l~~~~-----~~~~~~l~~L~~L  188 (332)
                      +..... .+       .+++++|++++|.++.     ++..+..+++|++|++++|.+....     +..+..+++|++|
T Consensus       182 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L  261 (461)
T 1z7x_W          182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTL  261 (461)
T ss_dssp             CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred             cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEE
Confidence            543211 11       2477888888887775     5666777788888888888776532     2233457788888


Q ss_pred             EcCCCccccc----CccccCCCCCCCEEEccCCCCCCCCcccc-----CCCCCCcEeeccCCCCcccC----hhhcCCCC
Q psy8550         189 QLNHNKLSSV----NNKTFIGLKSLKVLNLRGNFLEDLPDRLF-----APLSHLEELDLGQNRISRID----QACFEGLT  255 (332)
Q Consensus       189 ~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~----~~~~~~l~  255 (332)
                      ++++|.++..    .+..+.++++|++|++++|.++......+     ...++|+.|++++|.++...    +..+..++
T Consensus       262 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~  341 (461)
T 1z7x_W          262 WIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR  341 (461)
T ss_dssp             ECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCS
T ss_pred             ECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCC
Confidence            8888887763    24556667888888888887764332222     23367888888888877653    34455678


Q ss_pred             CCcEEeCCCCCCCCcCcccccC-----CCCccEEEcCCCcCCc----cCchhcCCCCCCCEEEccCCCCCCccc
Q psy8550         256 ALRILYLDDNQLRSVPTPSFIY-----LGMLAELRVGLNVFTT----LADGAFNGLGRLSALDLRGAGLTNMMG  320 (332)
Q Consensus       256 ~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~l~~  320 (332)
                      +|++|++++|.+++.....+..     .++|++|++++|.+++    ..+..+..+++|++|++++|+++....
T Consensus       342 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~  415 (461)
T 1z7x_W          342 FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI  415 (461)
T ss_dssp             SCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHH
T ss_pred             CccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHH
Confidence            8888899888887654433432     5688999999998885    556677788889999999998876543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.74  E-value=8e-20  Score=172.51  Aligned_cols=186  Identities=20%  Similarity=0.202  Sum_probs=92.6

Q ss_pred             ccEEEeecCCCcc-----chhhhcCCCCCcEEEeecCcCcccCCCCCC-----CCCCCcEEEcCCCcccccC----cccc
Q psy8550         138 IQRLVLKYNRIKT-----VDSAIQFYSSLQHVDLSHNQLVNIPIRGFE-----PQEKLVELQLNHNKLSSVN----NKTF  203 (332)
Q Consensus       138 L~~L~l~~~~l~~-----l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~----~~~~  203 (332)
                      +++|++++|.++.     ++..+..+++|++|++++|.+.......+.     ..++|++|++++|.++...    +..+
T Consensus       144 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l  223 (461)
T 1z7x_W          144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV  223 (461)
T ss_dssp             CCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHH
T ss_pred             ceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHH
Confidence            4444444444442     223334445555555555544432211111     1335555555555554421    3334


Q ss_pred             CCCCCCCEEEccCCCCCCCC-----ccccCCCCCCcEeeccCCCCcccC----hhhcCCCCCCcEEeCCCCCCCCcCccc
Q psy8550         204 IGLKSLKVLNLRGNFLEDLP-----DRLFAPLSHLEELDLGQNRISRID----QACFEGLTALRILYLDDNQLRSVPTPS  274 (332)
Q Consensus       204 ~~l~~L~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~  274 (332)
                      ..+++|++|++++|.++...     +..+..+++|++|++++|.++...    +..+..+++|++|++++|.+.+.....
T Consensus       224 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~  303 (461)
T 1z7x_W          224 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL  303 (461)
T ss_dssp             HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHH
T ss_pred             HhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHH
Confidence            44555666666665554321     222234556666666666655421    333444566666666666655433222


Q ss_pred             cc-----CCCCccEEEcCCCcCCcc----CchhcCCCCCCCEEEccCCCCCCcccccc
Q psy8550         275 FI-----YLGMLAELRVGLNVFTTL----ADGAFNGLGRLSALDLRGAGLTNMMGHSM  323 (332)
Q Consensus       275 ~~-----~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~  323 (332)
                      +.     ..++|+.|++++|.+++.    .+..+..+++|+.|++++|+++...+..+
T Consensus       304 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l  361 (461)
T 1z7x_W          304 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL  361 (461)
T ss_dssp             HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHH
T ss_pred             HHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHH
Confidence            22     124666667766666654    23445566777777777777766554433

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.74  E-value=3.3e-17  Score=134.71  Aligned_cols=111  Identities=34%  Similarity=0.478  Sum_probs=51.2

Q ss_pred             CCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCC
Q psy8550         184 KLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLD  263 (332)
Q Consensus       184 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  263 (332)
                      +|+.|++++|+++++++..|.++++|++|++++|.++.+++..|..+++|+.|++++|.++.+++..+..+++|++|+++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  108 (177)
T 2o6r_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD  108 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence            34444444444444433334444444444444444444444434444444444444444444444444444455555555


Q ss_pred             CCCCCCcCcccccCCCCccEEEcCCCcCCcc
Q psy8550         264 DNQLRSVPTPSFIYLGMLAELRVGLNVFTTL  294 (332)
Q Consensus       264 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  294 (332)
                      +|.++++++..+..+++|+.|++++|++.+.
T Consensus       109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A          109 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            5555544444444445555555555555443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.74  E-value=2.2e-17  Score=135.61  Aligned_cols=120  Identities=31%  Similarity=0.504  Sum_probs=92.7

Q ss_pred             CCCCCCCCCcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCC
Q psy8550         103 ASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEP  181 (332)
Q Consensus       103 ~~~~~p~~c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~  181 (332)
                      ....||..|.|..  ..++|.++.+..+|..+++++++|++++|.++.+++ .+.++++|++|++++|+++.+++..|..
T Consensus         2 ~~~~CP~~C~C~~--~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~   79 (174)
T 2r9u_A            2 HSAGCPSQCSCDQ--TLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDK   79 (174)
T ss_dssp             CCCSSCTTSEECS--SEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CCCCCCCCCEECC--cEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCC
Confidence            3467999999965  479999999999998888888888888888887644 6777777888888887777777666777


Q ss_pred             CCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCc
Q psy8550         182 QEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPD  224 (332)
Q Consensus       182 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  224 (332)
                      +++|++|++++|+++++++..|.++++|++|++++|.+...++
T Consensus        80 l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           80 LTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             cchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            7777777777777777766667777777777777777665443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.73  E-value=3.5e-17  Score=136.66  Aligned_cols=128  Identities=30%  Similarity=0.437  Sum_probs=113.3

Q ss_pred             cEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCC
Q psy8550         162 QHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQN  241 (332)
Q Consensus       162 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  241 (332)
                      +.++++++.++.++...   .++|++|++++|.++.+ |..|.++++|++|++++|.++.+++..|..+++|++|++++|
T Consensus        13 ~~l~~~~~~l~~ip~~~---~~~l~~L~L~~n~i~~i-p~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGI---PRDVTELYLDGNQFTLV-PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCSSCCSCC---CTTCCEEECCSSCCCSC-CGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCCcCCCCC---CCCCCEEECCCCcCchh-HHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            57888999999887532   35899999999999877 478899999999999999999999888899999999999999


Q ss_pred             CCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCc
Q psy8550         242 RISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTT  293 (332)
Q Consensus       242 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  293 (332)
                      .++.+++..|..+++|+.|++++|.++.+++..|..+++|+.|++++|++..
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            9999988889999999999999999999998888889999999999998864

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.73  E-value=2.6e-17  Score=134.62  Aligned_cols=115  Identities=30%  Similarity=0.507  Sum_probs=89.0

Q ss_pred             CCCCCCcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCCCC
Q psy8550         106 FCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEK  184 (332)
Q Consensus       106 ~~p~~c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~  184 (332)
                      .||..|.|...  .++|.++.++.+|..+++++++|++++|.++.+++ .+.++++|++|++++|+++.+++..|..+++
T Consensus         2 ~CP~~C~C~~~--~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~   79 (170)
T 3g39_A            2 ACPSQCSCSGT--TVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ   79 (170)
T ss_dssp             CCC-CCEEETT--EEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred             cCcCcCCcCCC--EEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCC
Confidence            59999999754  79999999999998888888888888888887744 6777777777777777777777777777777


Q ss_pred             CcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCC
Q psy8550         185 LVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDL  222 (332)
Q Consensus       185 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  222 (332)
                      |++|++++|+++++++..|.++++|++|+|++|.+...
T Consensus        80 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           80 LTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            77777777777777666677777777777777766544

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.72  E-value=6e-18  Score=153.10  Aligned_cols=193  Identities=21%  Similarity=0.333  Sum_probs=157.8

Q ss_pred             CCccEEEeecCCCc-cchhhhcC-CCCCcEEEeecCcCc--------------------ccCCCCCCC--------CCCC
Q psy8550         136 PSIQRLVLKYNRIK-TVDSAIQF-YSSLQHVDLSHNQLV--------------------NIPIRGFEP--------QEKL  185 (332)
Q Consensus       136 ~~L~~L~l~~~~l~-~l~~~~~~-l~~L~~L~l~~~~l~--------------------~~~~~~~~~--------l~~L  185 (332)
                      .+++.|.++++--. .+ ..+.. +++|++|++++|++.                    .++..+|.+        +++|
T Consensus        25 ~~l~~L~l~g~i~~~~~-~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L  103 (329)
T 3sb4_A           25 NSITHLTLTGKLNAEDF-RHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTL  103 (329)
T ss_dssp             HHCSEEEEEEEECHHHH-HHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTC
T ss_pred             CceeEEEEeccccHHHH-HHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCC
Confidence            56788888764211 22 13333 788889999888887                    677788888        9999


Q ss_pred             cEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCC----cccChhhc----------
Q psy8550         186 VELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRI----SRIDQACF----------  251 (332)
Q Consensus       186 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l----~~~~~~~~----------  251 (332)
                      +.|++.. .++.+.+.+|.++.+|+.+++++|.+..+++.+|..+.++..+....+..    ..+....|          
T Consensus       104 ~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i  182 (329)
T 3sb4_A          104 EKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTI  182 (329)
T ss_dssp             CC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEE
T ss_pred             cEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeE
Confidence            9999999 89999999999999999999999999999999999888787777655211    11111001          


Q ss_pred             ----------------------------------------CCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcC
Q psy8550         252 ----------------------------------------EGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVF  291 (332)
Q Consensus       252 ----------------------------------------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  291 (332)
                                                              ..+++|+.+++++|.++.++...|.++.+|+.+++.+| +
T Consensus       183 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i  261 (329)
T 3sb4_A          183 QVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-L  261 (329)
T ss_dssp             EECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-C
T ss_pred             EecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-c
Confidence                                                    02689999999999999999999999999999999998 9


Q ss_pred             CccCchhcCCCCCCC-EEEccCCCCCCcccccccCCCCcccC
Q psy8550         292 TTLADGAFNGLGRLS-ALDLRGAGLTNMMGHSMALGDYLHWI  332 (332)
Q Consensus       292 ~~~~~~~~~~l~~L~-~L~Ls~n~l~~l~~~~~~~l~~L~~l  332 (332)
                      +.+.+.+|.++.+|+ .+++.+ +++.|++.+|..+..|+.+
T Consensus       262 ~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          262 KTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             ceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            999999999999999 999998 9999999999999998753

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.71  E-value=3.9e-18  Score=165.11  Aligned_cols=211  Identities=17%  Similarity=0.155  Sum_probs=134.9

Q ss_pred             ccCCchhhHhhhhccchhhhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCcccCCCceEEecC
Q psy8550          45 NFKSPTEILKSLLIIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKE  124 (332)
Q Consensus        45 ~~~~~~~~~~~l~~iP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~c~c~~~~~~~~c~~  124 (332)
                      .+..++++...+..+|++++++++|+.|+++++......+          ... ....                      
T Consensus       350 ~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~----------~ll-~~~~----------------------  396 (567)
T 1dce_A          350 QLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTII----------LLM-RALD----------------------  396 (567)
T ss_dssp             TSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH----------HHH-HHHC----------------------
T ss_pred             cceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHH----------HHH-Hhcc----------------------
Confidence            3457777888899999999999999999987764211100          000 0000                      


Q ss_pred             CCccccCCCCC--CCccEEE-eecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCcc
Q psy8550         125 ANLDVIPITLN--PSIQRLV-LKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNK  201 (332)
Q Consensus       125 ~~l~~lp~~~~--~~L~~L~-l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  201 (332)
                       .....|..+.  ++|+.|+ ++.+.+..+          +.+.+.+|.+..+++.      .|+.|++++|.++++ |.
T Consensus       397 -~~~~~~~~l~~l~~L~~L~~l~~n~~~~L----------~~l~l~~n~i~~l~~~------~L~~L~Ls~n~l~~l-p~  458 (567)
T 1dce_A          397 -PLLYEKETLQYFSTLKAVDPMRAAYLDDL----------RSKFLLENSVLKMEYA------DVRVLHLAHKDLTVL-CH  458 (567)
T ss_dssp             -TGGGHHHHHHHHHHHHHHCGGGHHHHHHH----------HHHHHHHHHHHHHHHT------TCSEEECTTSCCSSC-CC
T ss_pred             -cccCCHHHHHHHHhcccCcchhhcccchh----------hhhhhhcccccccCcc------CceEEEecCCCCCCC-cC
Confidence             0011111111  3344444 333332222          2233344455544421      367777777777776 33


Q ss_pred             ccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcC-cccccCCCC
Q psy8550         202 TFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVP-TPSFIYLGM  280 (332)
Q Consensus       202 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~  280 (332)
                       |+++++|+.|+|++|.++.+|.. ++.+++|+.|++++|.++++ | .++.+++|+.|++++|.+++++ +..++.+++
T Consensus       459 -~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N~l~~l-p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~  534 (567)
T 1dce_A          459 -LEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPR  534 (567)
T ss_dssp             -GGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTT
T ss_pred             -ccccccCcEeecCcccccccchh-hhcCCCCCEEECCCCCCCCC-c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCC
Confidence             77777888888888888777664 57788888888888888876 3 5777888888888888888875 557888888


Q ss_pred             ccEEEcCCCcCCccCch---hcCCCCCCCEEEc
Q psy8550         281 LAELRVGLNVFTTLADG---AFNGLGRLSALDL  310 (332)
Q Consensus       281 L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L  310 (332)
                      |+.|++++|++++.++.   .+..+++|+.||+
T Consensus       535 L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          535 LVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            88888888888877662   2334778888764

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.71  E-value=3.4e-17  Score=130.73  Aligned_cols=128  Identities=23%  Similarity=0.216  Sum_probs=91.7

Q ss_pred             CCCcEEEcCCCccc-ccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEe
Q psy8550         183 EKLVELQLNHNKLS-SVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILY  261 (332)
Q Consensus       183 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  261 (332)
                      ++|+.|++++|.++ +..|..+..+++|++|++++|.++.+  ..++.+++|++|++++|.++...+..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            56667777777666 33355666677777777777777766  3356777777777777777775566666677788888


Q ss_pred             CCCCCCCCcC-cccccCCCCccEEEcCCCcCCccCc---hhcCCCCCCCEEEccC
Q psy8550         262 LDDNQLRSVP-TPSFIYLGMLAELRVGLNVFTTLAD---GAFNGLGRLSALDLRG  312 (332)
Q Consensus       262 L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~Ls~  312 (332)
                      +++|.+++++ +..++.+++|++|++++|++++.++   ..+..+++|+.||+++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            8888887764 2467778888888888888887776   5677788888888764

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.69  E-value=4.5e-18  Score=169.38  Aligned_cols=152  Identities=20%  Similarity=0.159  Sum_probs=71.5

Q ss_pred             hhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCC
Q psy8550         152 DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLS  231 (332)
Q Consensus       152 ~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  231 (332)
                      +..+..+.+|+.|++++|.+..++.. +..+++|++|+|++|.++.+ |..|+++++|++|+|++|.++.+|.. ++.++
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~-~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~  293 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIFNISAN-IFKYDFLTRLYLNGNSLTEL-PAEIKNLSNLRVLDLSHNRLTSLPAE-LGSCF  293 (727)
T ss_dssp             -----CCCCCCEEECTTSCCSCCCGG-GGGCCSCSCCBCTTSCCSCC-CGGGGGGTTCCEEECTTSCCSSCCSS-GGGGT
T ss_pred             hhhhccCCCCcEEECCCCCCCCCChh-hcCCCCCCEEEeeCCcCccc-ChhhhCCCCCCEEeCcCCcCCccChh-hcCCC
Confidence            33455555555555555555555432 23455555555555555543 34455555555555555555555443 35555


Q ss_pred             CCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCC-CccEEEcCCCcCCccCchhcCCCCCCCEEEc
Q psy8550         232 HLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLG-MLAELRVGLNVFTTLADGAFNGLGRLSALDL  310 (332)
Q Consensus       232 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  310 (332)
                      +|++|+|++|.++.++. .|+.+++|+.|+|++|.+++.++..+..+. ....+++++|.+++.+|.      .|+.|++
T Consensus       294 ~L~~L~L~~N~l~~lp~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l  366 (727)
T 4b8c_D          294 QLKYFYFFDNMVTTLPW-EFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEI  366 (727)
T ss_dssp             TCSEEECCSSCCCCCCS-STTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C------
T ss_pred             CCCEEECCCCCCCccCh-hhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEe
Confidence            55555555555555532 255555555555555555555444443221 112245555555554442      3445555


Q ss_pred             cCC
Q psy8550         311 RGA  313 (332)
Q Consensus       311 s~n  313 (332)
                      ++|
T Consensus       367 ~~n  369 (727)
T 4b8c_D          367 NTD  369 (727)
T ss_dssp             ---
T ss_pred             ecc
Confidence            555

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.68  E-value=5.4e-18  Score=168.81  Aligned_cols=142  Identities=23%  Similarity=0.234  Sum_probs=64.6

Q ss_pred             CCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCC
Q psy8550         177 RGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTA  256 (332)
Q Consensus       177 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  256 (332)
                      ..|..++.|+.|+|++|.+..+++ .+.++++|++|+|++|.++.+|+. ++.+++|+.|+|++|.++.+ |..|+.+++
T Consensus       218 ~~~~~l~~L~~L~Ls~n~l~~l~~-~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~  294 (727)
T 4b8c_D          218 DSKYDDQLWHALDLSNLQIFNISA-NIFKYDFLTRLYLNGNSLTELPAE-IKNLSNLRVLDLSHNRLTSL-PAELGSCFQ  294 (727)
T ss_dssp             ----CCCCCCEEECTTSCCSCCCG-GGGGCCSCSCCBCTTSCCSCCCGG-GGGGTTCCEEECTTSCCSSC-CSSGGGGTT
T ss_pred             hhhccCCCCcEEECCCCCCCCCCh-hhcCCCCCCEEEeeCCcCcccChh-hhCCCCCCEEeCcCCcCCcc-ChhhcCCCC
Confidence            444445555555555555544422 222445555555555555544433 34455555555555555544 333444555


Q ss_pred             CcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCC-CCEEEccCCCCCCccccc
Q psy8550         257 LRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGR-LSALDLRGAGLTNMMGHS  322 (332)
Q Consensus       257 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~l~~~~  322 (332)
                      |++|+|++|.++.+|. .|+.+++|+.|+|++|.+++.+|..+..+.. ...+++++|.+++..|..
T Consensus       295 L~~L~L~~N~l~~lp~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~  360 (727)
T 4b8c_D          295 LKYFYFFDNMVTTLPW-EFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE  360 (727)
T ss_dssp             CSEEECCSSCCCCCCS-STTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred             CCEEECCCCCCCccCh-hhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc
Confidence            5555555555554443 2445555555555555555544444332211 112445555554444443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.68  E-value=1.2e-15  Score=141.49  Aligned_cols=201  Identities=15%  Similarity=0.222  Sum_probs=150.8

Q ss_pred             eEEecCCCccccCCCCC---CCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcc
Q psy8550         119 VVTCKEANLDVIPITLN---PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKL  195 (332)
Q Consensus       119 ~~~c~~~~l~~lp~~~~---~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l  195 (332)
                      .+.... .++.++....   .+|+.+++.+|.++.++.......+|+.+.+.. .+..+...+|.++++|+.+++.. .+
T Consensus       161 ~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~-~l  237 (401)
T 4fdw_A          161 EIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPE-NV  237 (401)
T ss_dssp             EEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCT-TC
T ss_pred             EEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC-chheehhhHhhCCCCCCEEecCC-Cc
Confidence            344433 4444444332   567777777777777766333356777777763 36777777777777777777765 36


Q ss_pred             cccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCc-----ccChhhcCCCCCCcEEeCCCCCCCCc
Q psy8550         196 SSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRIS-----RIDQACFEGLTALRILYLDDNQLRSV  270 (332)
Q Consensus       196 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~  270 (332)
                      +.+...+|.+ .+|+.+.+ .+.++.++..+|.++.+|+.+++.+|.+.     .+...+|.++++|+.+.+. +.+..+
T Consensus       238 ~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I  314 (401)
T 4fdw_A          238 STIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRIL  314 (401)
T ss_dssp             CEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEE
T ss_pred             cCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEE
Confidence            6677777777 67888877 35677888888888899999998887665     6778888899999999998 458888


Q ss_pred             CcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCC
Q psy8550         271 PTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGD  327 (332)
Q Consensus       271 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~  327 (332)
                      ...+|.++.+|+.+.+..| ++.+...+|.++ +|+.+++++|.+..+++..|..++
T Consensus       315 ~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~  369 (401)
T 4fdw_A          315 GQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFP  369 (401)
T ss_dssp             CTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSC
T ss_pred             hhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCC
Confidence            8888989999999999554 888888889998 899999999999888888888774

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.68  E-value=2.2e-15  Score=139.78  Aligned_cols=205  Identities=16%  Similarity=0.229  Sum_probs=155.5

Q ss_pred             CceEEecCCCccccCCCCC--CCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCC
Q psy8550         117 TLVVTCKEANLDVIPITLN--PSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN  193 (332)
Q Consensus       117 ~~~~~c~~~~l~~lp~~~~--~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n  193 (332)
                      +..+....+ ++.++....  .+|+.+.+.+ .++.++. +|.++.+|+.+++.+|.++.++..+|. ..+|+.+.+.. 
T Consensus       137 L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~-  212 (401)
T 4fdw_A          137 IAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPV-  212 (401)
T ss_dssp             CSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCT-
T ss_pred             ccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCC-
Confidence            334554433 556655332  5678888775 6777766 788888888888888888888877777 47888888874 


Q ss_pred             cccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCC-----
Q psy8550         194 KLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLR-----  268 (332)
Q Consensus       194 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-----  268 (332)
                      .++.+...+|.++.+|+.+++.. .++.++..+|.+ .+|+.+.+ .+.++.+...+|.++++|+.+.+.+|.+.     
T Consensus       213 ~l~~I~~~aF~~~~~L~~l~l~~-~l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~  289 (401)
T 4fdw_A          213 TLKEIGSQAFLKTSQLKTIEIPE-NVSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEA  289 (401)
T ss_dssp             TCCEECTTTTTTCTTCCCEECCT-TCCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTC
T ss_pred             chheehhhHhhCCCCCCEEecCC-CccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCccc
Confidence            47778788888888888888876 467777777777 67888888 45577787888888888888888777665     


Q ss_pred             CcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCccc
Q psy8550         269 SVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHW  331 (332)
Q Consensus       269 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~  331 (332)
                      .++...|.++++|+.+.+. +.++.+...+|.++.+|+.+++.. +++.|+..+|..+ .|+.
T Consensus       290 ~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~-~l~~I~~~aF~~~-~L~~  349 (401)
T 4fdw_A          290 MIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPA-NVTQINFSAFNNT-GIKE  349 (401)
T ss_dssp             EECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECT-TCCEECTTSSSSS-CCCE
T ss_pred             EECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECc-cccEEcHHhCCCC-CCCE
Confidence            5777788888888888888 458888888888888888888854 4888888888887 7764

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.67  E-value=5.1e-17  Score=129.70  Aligned_cols=126  Identities=21%  Similarity=0.196  Sum_probs=80.9

Q ss_pred             CCCcEEEeecCcCc--ccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEe
Q psy8550         159 SSLQHVDLSHNQLV--NIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEEL  236 (332)
Q Consensus       159 ~~L~~L~l~~~~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  236 (332)
                      +++++|++++|.+.  .++ ..+..+++|++|++++|.++++  ..+..+++|++|++++|.++...+..+..+++|++|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLE-GLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCC-SCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             ccCeEEEccCCcCChhHHH-HHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            45666666666665  333 4556666666666666666665  456666667777777776666444444556677777


Q ss_pred             eccCCCCcccC-hhhcCCCCCCcEEeCCCCCCCCcCc---ccccCCCCccEEEcC
Q psy8550         237 DLGQNRISRID-QACFEGLTALRILYLDDNQLRSVPT---PSFIYLGMLAELRVG  287 (332)
Q Consensus       237 ~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~  287 (332)
                      ++++|.+++++ +..+..+++|++|++++|.++++++   ..++.+++|+.|+++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            77777766652 2556667777777777777776665   456667777777665

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.67  E-value=1.1e-16  Score=131.46  Aligned_cols=132  Identities=22%  Similarity=0.242  Sum_probs=65.9

Q ss_pred             CCCCCcEEEcCCCcccccCccccCCCC-CCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcE
Q psy8550         181 PQEKLVELQLNHNKLSSVNNKTFIGLK-SLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRI  259 (332)
Q Consensus       181 ~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  259 (332)
                      .+.+|+.|++++|+++.+ +. +..+. +|++|++++|.++.+  ..++.+++|++|++++|.++.+++..+..+++|++
T Consensus        17 ~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             CTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             CcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            344444444444444443 21 22222 455555555555444  12444555555555555555554443445555555


Q ss_pred             EeCCCCCCCCcCc-ccccCCCCccEEEcCCCcCCccCch---hcCCCCCCCEEEccCCCCC
Q psy8550         260 LYLDDNQLRSVPT-PSFIYLGMLAELRVGLNVFTTLADG---AFNGLGRLSALDLRGAGLT  316 (332)
Q Consensus       260 L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~  316 (332)
                      |++++|.+..++. ..++.+++|+.|++++|+++..++.   .+..+++|+.||+++|.+.
T Consensus        93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            5555555555443 2445555566666666655554432   3555666666666666543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.65  E-value=1.7e-16  Score=130.41  Aligned_cols=135  Identities=16%  Similarity=0.181  Sum_probs=92.0

Q ss_pred             hcCCCCCcEEEeecCcCcccCCCCCCCC-CCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCC
Q psy8550         155 IQFYSSLQHVDLSHNQLVNIPIRGFEPQ-EKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHL  233 (332)
Q Consensus       155 ~~~l~~L~~L~l~~~~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  233 (332)
                      +....+|++|++++|.++.++ . +..+ ++|++|++++|.++++  ..|.++++|++|++++|.++.+++..+..+++|
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~-~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIE-N-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCC-C-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             cCCcCCceEEEeeCCCCchhH-H-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            445566777777777766653 2 3333 3777777777777766  356677777777777777777766655667777


Q ss_pred             cEeeccCCCCcccCh-hhcCCCCCCcEEeCCCCCCCCcCcc---cccCCCCccEEEcCCCcCCc
Q psy8550         234 EELDLGQNRISRIDQ-ACFEGLTALRILYLDDNQLRSVPTP---SFIYLGMLAELRVGLNVFTT  293 (332)
Q Consensus       234 ~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~  293 (332)
                      +.|++++|.+..+++ ..+..+++|+.|++++|.++.++..   .++.+++|+.|++++|....
T Consensus        91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            777777777766643 3566777777777777777766653   46677788888888776654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.62  E-value=3.3e-15  Score=122.04  Aligned_cols=107  Identities=29%  Similarity=0.395  Sum_probs=61.9

Q ss_pred             CcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCC
Q psy8550         185 LVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDD  264 (332)
Q Consensus       185 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  264 (332)
                      .+.+++++|.++.++. .+  ..+|++|++++|.++.+++..|..+++|++|++++|+++.+++..|..+++|++|++++
T Consensus        11 ~~~l~~s~n~l~~ip~-~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLASVPT-GI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCSSCCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCccCc-cC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            3456666666665532 22  14556666666666666555555566666666666666665555555566666666666


Q ss_pred             CCCCCcCcccccCCCCccEEEcCCCcCCcc
Q psy8550         265 NQLRSVPTPSFIYLGMLAELRVGLNVFTTL  294 (332)
Q Consensus       265 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  294 (332)
                      |+++++++..|..+++|+.|++++|+++..
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            666665555555556666666666655543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.61  E-value=5.8e-15  Score=121.06  Aligned_cols=106  Identities=26%  Similarity=0.354  Sum_probs=58.4

Q ss_pred             cEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCC
Q psy8550         186 VELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDN  265 (332)
Q Consensus       186 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  265 (332)
                      +.+++++|.++.++. .+.  ++|++|++++|.++.+++..|..+++|+.|++++|+++.+++..|..+++|+.|++++|
T Consensus        15 ~~l~~~~n~l~~iP~-~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLASVPA-GIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCSSCCS-CCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCCccCC-CcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            455555555555532 222  45555555555555555555555555555555555555555554555555555555555


Q ss_pred             CCCCcCcccccCCCCccEEEcCCCcCCcc
Q psy8550         266 QLRSVPTPSFIYLGMLAELRVGLNVFTTL  294 (332)
Q Consensus       266 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  294 (332)
                      +++++++..|+.+++|+.|++++|++...
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccc
Confidence            55555554455555555555555555543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.54  E-value=7.2e-18  Score=141.36  Aligned_cols=131  Identities=24%  Similarity=0.370  Sum_probs=69.1

Q ss_pred             CCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCc
Q psy8550         179 FEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALR  258 (332)
Q Consensus       179 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  258 (332)
                      +..+++|++|++++|.++++ | .+.++++|++|++++|.++.+|.. +..+++|+.|++++|.++.++  .+..+++|+
T Consensus        44 ~~~l~~L~~L~ls~n~l~~l-~-~~~~l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~L~~N~l~~l~--~~~~l~~L~  118 (198)
T 1ds9_A           44 LSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIKKIENL-DAVADTLEELWISYNQIASLS--GIEKLVNLR  118 (198)
T ss_dssp             HHHTTTCSEEECSEEEESCC-C-CHHHHTTCCEEEEEEEEECSCSSH-HHHHHHCSEEEEEEEECCCHH--HHHHHHHSS
T ss_pred             HhcCCCCCEEECCCCCCccc-c-ccccCCCCCEEECCCCCcccccch-hhcCCcCCEEECcCCcCCcCC--ccccCCCCC
Confidence            44444444444444444443 2 444455555555555555544432 233455555555555555542  244555666


Q ss_pred             EEeCCCCCCCCcCc-ccccCCCCccEEEcCCCcCCccCch----------hcCCCCCCCEEEccCCCCC
Q psy8550         259 ILYLDDNQLRSVPT-PSFIYLGMLAELRVGLNVFTTLADG----------AFNGLGRLSALDLRGAGLT  316 (332)
Q Consensus       259 ~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~----------~~~~l~~L~~L~Ls~n~l~  316 (332)
                      .|++++|.+++++. ..+..+++|+.|++++|++++.+|.          .+..+++|+.||  +|.++
T Consensus       119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             EEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            66666666655443 3455566666666666666554432          256666777666  44444

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.53  E-value=3.7e-14  Score=128.89  Aligned_cols=111  Identities=24%  Similarity=0.406  Sum_probs=92.5

Q ss_pred             CCCCC-cccCCCceEEecCC-CccccCCCCC--CCccEEEeec-CCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCC
Q psy8550         107 CPPDC-DCNDETLVVTCKEA-NLDVIPITLN--PSIQRLVLKY-NRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFE  180 (332)
Q Consensus       107 ~p~~c-~c~~~~~~~~c~~~-~l~~lp~~~~--~~L~~L~l~~-~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~  180 (332)
                      ||..| .|...  .++|.+. .++.+|. ++  ++|+.|+|++ |.++.+++ .|.++++|++|+|++|+|+++++..|.
T Consensus         1 cp~~c~~C~~~--~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~   77 (347)
T 2ifg_A            1 CPDACCPHGSS--GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH   77 (347)
T ss_dssp             CCSSSCCSSSS--CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGG
T ss_pred             CCCcCccccCC--EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhc
Confidence            89999 99654  5899988 8999998 76  4688889986 88888775 788888888888888888888888888


Q ss_pred             CCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCC
Q psy8550         181 PQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLED  221 (332)
Q Consensus       181 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  221 (332)
                      .+++|+.|+|++|+++++++..|..+. |+.|+|.+|.+..
T Consensus        78 ~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           78 FTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             SCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            888888888888888888777776665 8888888888763

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.52  E-value=9.2e-18  Score=140.70  Aligned_cols=126  Identities=26%  Similarity=0.262  Sum_probs=108.9

Q ss_pred             cccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCC
Q psy8550         201 KTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGM  280 (332)
Q Consensus       201 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  280 (332)
                      ..|..+++|++|++++|.++.+|  .+..+++|+.|++++|.++.++ ..+..+++|+.|++++|.+++++  .++.+++
T Consensus        42 ~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~-~~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~  116 (198)
T 1ds9_A           42 ATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIE-NLDAVADTLEELWISYNQIASLS--GIEKLVN  116 (198)
T ss_dssp             HHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCS-SHHHHHHHCSEEEEEEEECCCHH--HHHHHHH
T ss_pred             HHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCccccc-chhhcCCcCCEEECcCCcCCcCC--ccccCCC
Confidence            37888999999999999999987  4688999999999999999874 45666789999999999999976  5888999


Q ss_pred             ccEEEcCCCcCCccCc-hhcCCCCCCCEEEccCCCCCCcccc----------cccCCCCccc
Q psy8550         281 LAELRVGLNVFTTLAD-GAFNGLGRLSALDLRGAGLTNMMGH----------SMALGDYLHW  331 (332)
Q Consensus       281 L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~l~~~----------~~~~l~~L~~  331 (332)
                      |+.|++++|+++++++ ..+..+++|++|++++|.+++..+.          .+..++.|+.
T Consensus       117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~  178 (198)
T 1ds9_A          117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKK  178 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSE
T ss_pred             CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEE
Confidence            9999999999998765 6789999999999999999776554          3677777764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.49  E-value=7.4e-16  Score=149.81  Aligned_cols=142  Identities=15%  Similarity=0.075  Sum_probs=92.2

Q ss_pred             CCCCcEEEcCCCcccccCccccCC-CCCCCEEEcc----CCCCCCCCcc-----ccCCCCCCcEeeccCCC--CcccChh
Q psy8550         182 QEKLVELQLNHNKLSSVNNKTFIG-LKSLKVLNLR----GNFLEDLPDR-----LFAPLSHLEELDLGQNR--ISRIDQA  249 (332)
Q Consensus       182 l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~L~----~n~l~~~~~~-----~~~~l~~L~~L~L~~n~--l~~~~~~  249 (332)
                      +++|++|+++.|.+++..+..+.. +++|+.|+++    .|.++..|..     .+..+++|+.|+++.|.  ++.....
T Consensus       377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~  456 (592)
T 3ogk_B          377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS  456 (592)
T ss_dssp             CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH
T ss_pred             CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH
Confidence            556666666656665544444443 6677777775    5566654321     23457788888886432  4433232


Q ss_pred             hc-CCCCCCcEEeCCCCCCCCcC-cccccCCCCccEEEcCCCcCCcc-CchhcCCCCCCCEEEccCCCCCCcccccc
Q psy8550         250 CF-EGLTALRILYLDDNQLRSVP-TPSFIYLGMLAELRVGLNVFTTL-ADGAFNGLGRLSALDLRGAGLTNMMGHSM  323 (332)
Q Consensus       250 ~~-~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~  323 (332)
                      .+ ..+++|+.|++++|.+++.. +..+..+++|+.|++++|.+++. .+..+..+++|+.|++++|+++......+
T Consensus       457 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l  533 (592)
T 3ogk_B          457 YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLM  533 (592)
T ss_dssp             HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGG
T ss_pred             HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHH
Confidence            23 34788999999999887532 22446788999999999998754 33345678899999999999876644433

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.45  E-value=4.6e-13  Score=121.63  Aligned_cols=107  Identities=22%  Similarity=0.239  Sum_probs=87.3

Q ss_pred             cEEEcCCC-cccccCccccCCCCCCCEEEccC-CCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCC
Q psy8550         186 VELQLNHN-KLSSVNNKTFIGLKSLKVLNLRG-NFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLD  263 (332)
Q Consensus       186 ~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  263 (332)
                      ..++++++ +++.++ . +..+.+|++|+|++ |.++.+++..|+.+++|+.|+|++|.++++++..|.++++|+.|+|+
T Consensus        11 ~~v~~~~~n~l~~ip-~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALDSLH-H-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCTTTT-T-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCCccC-C-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            35677777 788874 4 88888888888886 88888888888888888888888888888888888888888888888


Q ss_pred             CCCCCCcCcccccCCCCccEEEcCCCcCCccC
Q psy8550         264 DNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA  295 (332)
Q Consensus       264 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  295 (332)
                      +|+++++++..+..++ |+.|++.+|++....
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c  119 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSC  119 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCG
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCccCCC
Confidence            8888888887776665 888888888887543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.41  E-value=3.4e-14  Score=138.11  Aligned_cols=174  Identities=14%  Similarity=0.007  Sum_probs=87.6

Q ss_pred             CCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCc---ccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEE
Q psy8550         136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLV---NIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVL  212 (332)
Q Consensus       136 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  212 (332)
                      ++++.|++++|.+..++..+..+++|++|++++....   ......+..+++|+.|+++++....+ |..+..+++|++|
T Consensus       220 ~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L  298 (592)
T 3ogk_B          220 RSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEM-PILFPFAAQIRKL  298 (592)
T ss_dssp             TTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTG-GGGGGGGGGCCEE
T ss_pred             CCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHH-HHHHhhcCCCcEE
Confidence            5666666666666666666666666666666542211   01113345556666666655433333 4455566677777


Q ss_pred             EccCCCCCCCCc-cccCCCCCCcEeeccCCCCccc-ChhhcCCCCCCcEEeCCC-----------CCCCCcCcc-cccCC
Q psy8550         213 NLRGNFLEDLPD-RLFAPLSHLEELDLGQNRISRI-DQACFEGLTALRILYLDD-----------NQLRSVPTP-SFIYL  278 (332)
Q Consensus       213 ~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~-----------n~l~~~~~~-~~~~l  278 (332)
                      ++++|.++.... ..+..+++|+.|++++ .+... .+.....+++|++|++++           |.+++.... ....+
T Consensus       299 ~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~  377 (592)
T 3ogk_B          299 DLLYALLETEDHCTLIQKCPNLEVLETRN-VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC  377 (592)
T ss_dssp             EETTCCCCHHHHHHHHTTCTTCCEEEEEG-GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHC
T ss_pred             ecCCCcCCHHHHHHHHHhCcCCCEEeccC-ccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhC
Confidence            777776542221 2235566666666662 22211 112223455566666662           333322111 12235


Q ss_pred             CCccEEEcCCCcCCccCchhcCC-CCCCCEEEcc
Q psy8550         279 GMLAELRVGLNVFTTLADGAFNG-LGRLSALDLR  311 (332)
Q Consensus       279 ~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~Ls  311 (332)
                      ++|++|+++.|.+++.....+.. +++|+.|+++
T Consensus       378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~  411 (592)
T 3ogk_B          378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLV  411 (592)
T ss_dssp             TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred             ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEe
Confidence            55666666555555444333333 5555555554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.36  E-value=8.7e-15  Score=134.45  Aligned_cols=168  Identities=18%  Similarity=0.119  Sum_probs=115.0

Q ss_pred             CCCCCccEEEeecCCCccchh-----hhcC-CCCCcEEEeecCcCcccCCCCC-CCCCCCcEEEcCCCcccccCcccc--
Q psy8550         133 TLNPSIQRLVLKYNRIKTVDS-----AIQF-YSSLQHVDLSHNQLVNIPIRGF-EPQEKLVELQLNHNKLSSVNNKTF--  203 (332)
Q Consensus       133 ~~~~~L~~L~l~~~~l~~l~~-----~~~~-l~~L~~L~l~~~~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~--  203 (332)
                      .+.+.++.|++++|.++....     .+.. ..+|++|++++|.+.......+ ..+++|+.|++++|.++......+  
T Consensus        69 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~  148 (372)
T 3un9_A           69 EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD  148 (372)
T ss_dssp             HHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred             HHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence            344788999999999885332     2332 3689999999998865332222 245688999999998876544443  


Q ss_pred             ---CCCCCCCEEEccCCCCCCCCc----cccCCCCCCcEeeccCCCCcccC----hhhcCCCCCCcEEeCCCCCCCCcCc
Q psy8550         204 ---IGLKSLKVLNLRGNFLEDLPD----RLFAPLSHLEELDLGQNRISRID----QACFEGLTALRILYLDDNQLRSVPT  272 (332)
Q Consensus       204 ---~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~  272 (332)
                         ...++|++|+|++|.++....    ..+...++|++|++++|.++...    ...+...++|++|++++|.+++...
T Consensus       149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~  228 (372)
T 3un9_A          149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA  228 (372)
T ss_dssp             HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH
T ss_pred             HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH
Confidence               345788999999988865322    12356778888899888887543    3445666788888888888876433


Q ss_pred             c----cccCCCCccEEEcCCCcCCccCchhcC
Q psy8550         273 P----SFIYLGMLAELRVGLNVFTTLADGAFN  300 (332)
Q Consensus       273 ~----~~~~l~~L~~L~L~~n~l~~~~~~~~~  300 (332)
                      .    .+...++|++|++++|.++......+.
T Consensus       229 ~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~  260 (372)
T 3un9_A          229 LALARAAREHPSLELLHLYFNELSSEGRQVLR  260 (372)
T ss_dssp             HHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence            2    334557888888888888765544443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.32  E-value=2.7e-14  Score=138.83  Aligned_cols=134  Identities=12%  Similarity=0.049  Sum_probs=82.2

Q ss_pred             CCCCcEEEcCCCcccccCccccC-CCCCCCEEEcc--C----CCCCCCCcc-----ccCCCCCCcEeeccCCCCcccChh
Q psy8550         182 QEKLVELQLNHNKLSSVNNKTFI-GLKSLKVLNLR--G----NFLEDLPDR-----LFAPLSHLEELDLGQNRISRIDQA  249 (332)
Q Consensus       182 l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~--~----n~l~~~~~~-----~~~~l~~L~~L~L~~n~l~~~~~~  249 (332)
                      +++|++|.+.+|.++......+. .+++|+.|+++  +    +.++..|..     .+..+++|+.|++++ .++.....
T Consensus       371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~  449 (594)
T 2p1m_B          371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFE  449 (594)
T ss_dssp             CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHH
T ss_pred             chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHH
Confidence            45666666655655544333333 36677777777  3    445543321     134567777888766 45443333


Q ss_pred             hcCC-CCCCcEEeCCCCCCCCcCcccc-cCCCCccEEEcCCCcCCccCch-hcCCCCCCCEEEccCCCCC
Q psy8550         250 CFEG-LTALRILYLDDNQLRSVPTPSF-IYLGMLAELRVGLNVFTTLADG-AFNGLGRLSALDLRGAGLT  316 (332)
Q Consensus       250 ~~~~-l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~  316 (332)
                      .+.. +++|+.|++++|.+++.....+ ..+++|+.|++++|.+++.... ....+++|+.|++++|+++
T Consensus       450 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            3433 6778888888888765433333 4578888888888888644332 3445778888888888773

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.31  E-value=2.8e-14  Score=131.10  Aligned_cols=87  Identities=23%  Similarity=0.229  Sum_probs=35.6

Q ss_pred             CCCcEEEcCCCcccccC----ccccCCCCCCCEEEccCCCCCCCC----ccccCCCCCCcEeeccCCCCcccCh----hh
Q psy8550         183 EKLVELQLNHNKLSSVN----NKTFIGLKSLKVLNLRGNFLEDLP----DRLFAPLSHLEELDLGQNRISRIDQ----AC  250 (332)
Q Consensus       183 ~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~----~~  250 (332)
                      ++|++|++++|.++...    +..+...++|++|+|++|.++...    ...+...++|++|++++|.++....    ..
T Consensus       155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~  234 (372)
T 3un9_A          155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA  234 (372)
T ss_dssp             CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred             CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence            44555555555443321    112233444555555555444221    1112333445555555554443211    11


Q ss_pred             cCCCCCCcEEeCCCCCCCC
Q psy8550         251 FEGLTALRILYLDDNQLRS  269 (332)
Q Consensus       251 ~~~l~~L~~L~L~~n~l~~  269 (332)
                      +...++|++|++++|.+++
T Consensus       235 L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          235 AREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHCSSCCEEECTTSSCCH
T ss_pred             HHhCCCCCEEeccCCCCCH
Confidence            2223445555555554443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.24  E-value=1.2e-12  Score=127.08  Aligned_cols=56  Identities=16%  Similarity=0.013  Sum_probs=23.9

Q ss_pred             CCCCcEEeCCCCCCCCcCc-ccccCCCCccEEEcCCCcCCcc-CchhcCCCCCCCEEEc
Q psy8550         254 LTALRILYLDDNQLRSVPT-PSFIYLGMLAELRVGLNVFTTL-ADGAFNGLGRLSALDL  310 (332)
Q Consensus       254 l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L  310 (332)
                      +++|++|++++|.+++... ..+..+++|+.|++++| ++.. .+.....+++|+.|++
T Consensus       288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L  345 (594)
T 2p1m_B          288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRV  345 (594)
T ss_dssp             HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEE
T ss_pred             hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEE
Confidence            3455555555555432111 11234455555555555 2211 1111223555566655

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.14  E-value=1.9e-09  Score=99.56  Aligned_cols=103  Identities=17%  Similarity=0.264  Sum_probs=78.4

Q ss_pred             cccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCC
Q psy8550         225 RLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGR  304 (332)
Q Consensus       225 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  304 (332)
                      .+|..+.+|+.+.+..+ +..+...+|.+++.|+.+.+. +.++.++...|.++.+|+.+.+..+ ++.+...+|.++.+
T Consensus       259 ~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~  335 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ  335 (394)
T ss_dssp             TTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred             ceeeecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence            34556666777776543 345666667777788887775 5677788888888889999998754 77788888999999


Q ss_pred             CCEEEccCCCCCCcccccccCCCCccc
Q psy8550         305 LSALDLRGAGLTNMMGHSMALGDYLHW  331 (332)
Q Consensus       305 L~~L~Ls~n~l~~l~~~~~~~l~~L~~  331 (332)
                      |+.+.+.. .++.|...+|..|.+|+.
T Consensus       336 L~~i~ip~-sv~~I~~~aF~~C~~L~~  361 (394)
T 4gt6_A          336 LERIAIPS-SVTKIPESAFSNCTALNN  361 (394)
T ss_dssp             CCEEEECT-TCCBCCGGGGTTCTTCCE
T ss_pred             CCEEEECc-ccCEEhHhHhhCCCCCCE
Confidence            99999964 488899999998888864

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.06  E-value=1.5e-09  Score=100.31  Aligned_cols=189  Identities=20%  Similarity=0.291  Sum_probs=97.3

Q ss_pred             CCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCC---------------------
Q psy8550         136 PSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN---------------------  193 (332)
Q Consensus       136 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n---------------------  193 (332)
                      .+|+.+.+.++ +..++. .|.++.+|+.+++..+ +..+...+|.++..|+.+.+..+                     
T Consensus       162 ~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~  239 (394)
T 4fs7_A          162 ESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPD  239 (394)
T ss_dssp             TTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECT
T ss_pred             CCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCceEEECC
Confidence            45666666543 334444 5555666666665543 44444445555444444443322                     


Q ss_pred             cccccCccccCCCCCCCEEEccCCCC--------------------CCCCccccCCCCCCcEeeccCCCCcccChhhcCC
Q psy8550         194 KLSSVNNKTFIGLKSLKVLNLRGNFL--------------------EDLPDRLFAPLSHLEELDLGQNRISRIDQACFEG  253 (332)
Q Consensus       194 ~l~~~~~~~~~~l~~L~~L~L~~n~l--------------------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  253 (332)
                      .++.+...+|.++.+++.+.+..+..                    ..++...|..+.+|+.+.+.++ ++.+...+|.+
T Consensus       240 ~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~  318 (394)
T 4fs7_A          240 SFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFES  318 (394)
T ss_dssp             TCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-CCEECTTTTTT
T ss_pred             CceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeeccccccccccccccccccc-cceechhhhcC
Confidence            12222233444455555555543311                    0123333445555555555443 55555556666


Q ss_pred             CCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCccc
Q psy8550         254 LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHW  331 (332)
Q Consensus       254 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~  331 (332)
                      +.+|+.+++.. .++.+...+|.++.+|+.+.+..+ ++.+...+|.++.+|+.+++..+ ++.+ ..+|..+.+|++
T Consensus       319 c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~~-~~~F~~c~~L~~  392 (394)
T 4fs7_A          319 CTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQY-RYDFEDTTKFKW  392 (394)
T ss_dssp             CTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGGG-GGGBCTTCEEEE
T ss_pred             CCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEEh-hheecCCCCCcE
Confidence            66666666643 355566666666666666666554 55555666666666666666543 3333 345666666554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.03  E-value=1.7e-09  Score=99.83  Aligned_cols=104  Identities=20%  Similarity=0.265  Sum_probs=87.0

Q ss_pred             ccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCC
Q psy8550         200 NKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLG  279 (332)
Q Consensus       200 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  279 (332)
                      ..+|..+.+|+.+.+.. .++.+.+.+|.++.+|+.+++..+ ++.+...+|.++.+|+.+.+..+ ++.+...+|.++.
T Consensus       290 ~~~F~~~~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~  366 (394)
T 4fs7_A          290 EKTFYGCSSLTEVKLLD-SVKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCI  366 (394)
T ss_dssp             TTTTTTCTTCCEEEECT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCT
T ss_pred             ccccccccccccccccc-ccceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCC
Confidence            45677788889888875 488888899999999999999754 88899999999999999999876 8899999999999


Q ss_pred             CccEEEcCCCcCCccCchhcCCCCCCCEE
Q psy8550         280 MLAELRVGLNVFTTLADGAFNGLGRLSAL  308 (332)
Q Consensus       280 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  308 (332)
                      +|+.+++..+ ++.. ..+|.++++|+.+
T Consensus       367 ~L~~i~lp~~-~~~~-~~~F~~c~~L~~I  393 (394)
T 4fs7_A          367 NLKKVELPKR-LEQY-RYDFEDTTKFKWI  393 (394)
T ss_dssp             TCCEEEEEGG-GGGG-GGGBCTTCEEEEE
T ss_pred             CCCEEEECCC-CEEh-hheecCCCCCcEE
Confidence            9999999755 3333 4578888887754

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.02  E-value=5.4e-09  Score=96.49  Aligned_cols=207  Identities=21%  Similarity=0.352  Sum_probs=143.0

Q ss_pred             CceEEecCCCccccCCCCC---CCccEEEeecCC---Cccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEE
Q psy8550         117 TLVVTCKEANLDVIPITLN---PSIQRLVLKYNR---IKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQ  189 (332)
Q Consensus       117 ~~~~~c~~~~l~~lp~~~~---~~L~~L~l~~~~---l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~  189 (332)
                      +..+...+ .++.+...-.   .+|+.+.+..+.   ++.++. +|.++.+|+.+.+.. .++.+...+|..+.+|+.+.
T Consensus        66 L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~-~~~~I~~~aF~~c~~L~~i~  143 (394)
T 4gt6_A           66 LTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD-SVTEIDSEAFHHCEELDTVT  143 (394)
T ss_dssp             CCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT-TCSEECTTTTTTCTTCCEEE
T ss_pred             CEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC-ccceehhhhhhhhccccccc
Confidence            44455543 3555554332   678888887653   667766 777888888777654 36777778888889999999


Q ss_pred             cCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccC-----------------------------
Q psy8550         190 LNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQ-----------------------------  240 (332)
Q Consensus       190 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-----------------------------  240 (332)
                      +.. .+..+...+|..+.+|+.+.+..+ ++.+...+|.. .+|+.+.+..                             
T Consensus       144 lp~-~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~~~  220 (394)
T 4gt6_A          144 IPE-GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYPAI  220 (394)
T ss_dssp             CCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSCBS
T ss_pred             ccc-eeeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccccccchhhhccccceecccccccccc
Confidence            864 456666778888888888887643 33333333322 2233333221                             


Q ss_pred             ------------------------------CCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCc
Q psy8550         241 ------------------------------NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNV  290 (332)
Q Consensus       241 ------------------------------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  290 (332)
                                                    +.++.+...+|.++..|+.+.+..+ +..+....|..+++|+.+.+. +.
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~  298 (394)
T 4gt6_A          221 DNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SR  298 (394)
T ss_dssp             SSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TT
T ss_pred             cceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccc-cceecCcccccccccccccCC-Cc
Confidence                                          1122334455677777888777543 445667788888889999885 66


Q ss_pred             CCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCccc
Q psy8550         291 FTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHW  331 (332)
Q Consensus       291 l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~  331 (332)
                      ++.+...+|.++.+|+.+++.+ .++.|...+|..|.+|+.
T Consensus       299 i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~C~~L~~  338 (394)
T 4gt6_A          299 ITELPESVFAGCISLKSIDIPE-GITQILDDAFAGCEQLER  338 (394)
T ss_dssp             CCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCE
T ss_pred             ccccCceeecCCCCcCEEEeCC-cccEehHhHhhCCCCCCE
Confidence            8888889999999999999985 499999999999998875

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.95  E-value=1e-08  Score=94.00  Aligned_cols=153  Identities=14%  Similarity=0.268  Sum_probs=119.7

Q ss_pred             ccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcC
Q psy8550         173 NIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFE  252 (332)
Q Consensus       173 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  252 (332)
                      .+....+....+|+.+.+.. .+..+...+|.++.+|+.+.+..+ ++.+...+|..+.+|+.+.+.. .++.+....|.
T Consensus       207 ~i~~~~f~~~~~l~~i~~~~-~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~  283 (379)
T 4h09_A          207 TVTAYGFSYGKNLKKITITS-GVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCS  283 (379)
T ss_dssp             EECTTTTTTCSSCSEEECCT-TCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTT
T ss_pred             EEeecccccccccceeeecc-ceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccc
Confidence            34445666777888888764 356666777888888888888764 7777777788888888888865 47777777888


Q ss_pred             CCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCcc
Q psy8550         253 GLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLH  330 (332)
Q Consensus       253 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~  330 (332)
                      ++.+|+.+.+.++.++.+...+|.++.+|+.+.+..+ ++.+...+|.++.+|+.+.+..+ ++.|...+|..+..++
T Consensus       284 ~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~~  359 (379)
T 4h09_A          284 GCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSITK  359 (379)
T ss_dssp             TCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCCC
T ss_pred             cccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCCc
Confidence            8888998888888888888888888888998888644 77787888888888988888654 8888888888776543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.92  E-value=1.5e-08  Score=92.78  Aligned_cols=168  Identities=16%  Similarity=0.238  Sum_probs=133.4

Q ss_pred             hhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCC
Q psy8550         154 AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHL  233 (332)
Q Consensus       154 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  233 (332)
                      .+....+++.+.+..+ +..+...+|.++..|+.+.+..+ ++.+...+|.++.+|+.+.+.. .++.++..+|..+.+|
T Consensus       212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L  288 (379)
T 4h09_A          212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNL  288 (379)
T ss_dssp             TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTC
T ss_pred             ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceecccccccccccc
Confidence            5566778888887654 67777789999999999999875 7888888999999999999964 5888888889999999


Q ss_pred             cEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCC
Q psy8550         234 EELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGA  313 (332)
Q Consensus       234 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  313 (332)
                      +.+.+.++.++.+...+|.++.+|+.+.+..+ ++.+...+|.++.+|+.+.+..+ ++.+...+|.++..++ +.   .
T Consensus       289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~~-~~---~  362 (379)
T 4h09_A          289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSITK-YP---T  362 (379)
T ss_dssp             CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCCC-CC---T
T ss_pred             ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCCc-Cc---c
Confidence            99999999999999999999999999999754 88899999999999999999754 8888888898875443 22   2


Q ss_pred             CCCCcccccccCCCCcc
Q psy8550         314 GLTNMMGHSMALGDYLH  330 (332)
Q Consensus       314 ~l~~l~~~~~~~l~~L~  330 (332)
                      .+..+...+|+.+.+||
T Consensus       363 ~~~~~~~~~f~~~~~Lk  379 (379)
T 4h09_A          363 WLSKGNNGDYGIFTKIK  379 (379)
T ss_dssp             TCEECTTSCEEC-----
T ss_pred             ccccCceeehhhhhhcC
Confidence            23344445566666654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.84  E-value=7e-10  Score=101.15  Aligned_cols=174  Identities=11%  Similarity=0.103  Sum_probs=108.6

Q ss_pred             CCccEEEeecCCC----------ccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccC-
Q psy8550         136 PSIQRLVLKYNRI----------KTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFI-  204 (332)
Q Consensus       136 ~~L~~L~l~~~~l----------~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-  204 (332)
                      ++|+.|.+.+...          ..+...+..+++|+.|++++|.-..+++  +. +++|+.|++..|.+.......+. 
T Consensus       139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~--~~-~~~L~~L~L~~~~l~~~~l~~l~~  215 (362)
T 2ra8_A          139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK--KP-RPNLKSLEIISGGLPDSVVEDILG  215 (362)
T ss_dssp             TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS--CB-CTTCSEEEEECSBCCHHHHHHHHH
T ss_pred             chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc--cc-CCCCcEEEEecCCCChHHHHHHHH
Confidence            6888888865432          1355667788899999998874223332  33 78899999988776543222332 


Q ss_pred             -CCCCCCEEEccCC--C------CCCCCcccc-CCCCCCcEeeccCCCCcccChhhc---CCCCCCcEEeCCCCCCCCcC
Q psy8550         205 -GLKSLKVLNLRGN--F------LEDLPDRLF-APLSHLEELDLGQNRISRIDQACF---EGLTALRILYLDDNQLRSVP  271 (332)
Q Consensus       205 -~l~~L~~L~L~~n--~------l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~  271 (332)
                       .+++|+.|+|+.+  .      +..+.+... ..+++|+.|++.+|.+.......+   ..+++|++|+|+.|.+.+..
T Consensus       216 ~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G  295 (362)
T 2ra8_A          216 SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEG  295 (362)
T ss_dssp             SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHH
T ss_pred             ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHH
Confidence             6788998888531  1      111111111 246788888888887764322222   24678888888888887632


Q ss_pred             cc----cccCCCCccEEEcCCCcCCccCchhcCC-CCCCCEEEccCCC
Q psy8550         272 TP----SFIYLGMLAELRVGLNVFTTLADGAFNG-LGRLSALDLRGAG  314 (332)
Q Consensus       272 ~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~  314 (332)
                      ..    .+..+++|+.|++++|.++......+.. +  ...++++++.
T Consensus       296 ~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          296 ARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             HHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            21    2245678888888888877544333433 2  3567888776

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.81  E-value=4.8e-09  Score=95.60  Aligned_cols=168  Identities=16%  Similarity=0.146  Sum_probs=109.7

Q ss_pred             cchhhhcCCCCCcEEEeecCcCc-----ccC----CCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCC
Q psy8550         150 TVDSAIQFYSSLQHVDLSHNQLV-----NIP----IRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLE  220 (332)
Q Consensus       150 ~l~~~~~~l~~L~~L~l~~~~l~-----~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  220 (332)
                      .+..++..+++|+.|.+.+....     .+.    ...+..+++|+.|.+++|.-..+.+  +. +++|+.|++..+.+.
T Consensus       130 ~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~--~~-~~~L~~L~L~~~~l~  206 (362)
T 2ra8_A          130 GIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK--KP-RPNLKSLEIISGGLP  206 (362)
T ss_dssp             HHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS--CB-CTTCSEEEEECSBCC
T ss_pred             HHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc--cc-CCCCcEEEEecCCCC
Confidence            34445677889999998765322     111    1233567899999998873223322  33 789999999988875


Q ss_pred             CCCcccc--CCCCCCcEeeccC--CC------CcccChhhc--CCCCCCcEEeCCCCCCCCcCcccc---cCCCCccEEE
Q psy8550         221 DLPDRLF--APLSHLEELDLGQ--NR------ISRIDQACF--EGLTALRILYLDDNQLRSVPTPSF---IYLGMLAELR  285 (332)
Q Consensus       221 ~~~~~~~--~~l~~L~~L~L~~--n~------l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~  285 (332)
                      .-.-..+  ..+++|+.|+|+.  +.      +..+.+ .+  ..+++|++|++.+|.+.+.....+   ..+++|++|+
T Consensus       207 ~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~-~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~Ld  285 (362)
T 2ra8_A          207 DSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP-LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMD  285 (362)
T ss_dssp             HHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG-GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEE
T ss_pred             hHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH-HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEE
Confidence            3222222  3688999999853  11      222211 22  247899999999998874322122   2468999999


Q ss_pred             cCCCcCCccC----chhcCCCCCCCEEEccCCCCCCcccc
Q psy8550         286 VGLNVFTTLA----DGAFNGLGRLSALDLRGAGLTNMMGH  321 (332)
Q Consensus       286 L~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~l~~~  321 (332)
                      |+.|.+++..    ...+..+++|+.|++++|.++.-...
T Consensus       286 Ls~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~  325 (362)
T 2ra8_A          286 ISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKK  325 (362)
T ss_dssp             CCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHH
T ss_pred             CCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHH
Confidence            9999998643    22334578999999999988754333

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=98.65  E-value=3.8e-08  Score=76.10  Aligned_cols=64  Identities=23%  Similarity=0.508  Sum_probs=54.7

Q ss_pred             CCCCCCcccCCCceEEecCCCcc--ccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcC
Q psy8550         106 FCPPDCDCNDETLVVTCKEANLD--VIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQL  171 (332)
Q Consensus       106 ~~p~~c~c~~~~~~~~c~~~~l~--~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l  171 (332)
                      .||..|.|...  .++|.+..++  .+|.+++.+++.|+|++|.|+.|+. .|..+++|++|+|.+|.+
T Consensus         1 ~CP~~C~C~~~--~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A            1 PCPAPCSCAGT--LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             CCCTTCEEETT--EEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CcCCCCEEcCC--EEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            49999999854  7999999999  9999999999999999999988887 667777888887777754

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.42  E-value=6e-08  Score=79.78  Aligned_cols=114  Identities=11%  Similarity=0.021  Sum_probs=64.9

Q ss_pred             cCCCCCCCEEEccCC-CCCCCC----ccccCCCCCCcEeeccCCCCcccC----hhhcCCCCCCcEEeCCCCCCCCcC--
Q psy8550         203 FIGLKSLKVLNLRGN-FLEDLP----DRLFAPLSHLEELDLGQNRISRID----QACFEGLTALRILYLDDNQLRSVP--  271 (332)
Q Consensus       203 ~~~l~~L~~L~L~~n-~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~--  271 (332)
                      +...++|++|+|++| .+....    ...+...++|++|++++|.+....    ...+...++|++|+|++|.+.+..  
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            344455555555555 544211    112344456666666666665322    223344466777777777776532  


Q ss_pred             --cccccCCCCccEEEc--CCCcCCccC----chhcCCCCCCCEEEccCCCCC
Q psy8550         272 --TPSFIYLGMLAELRV--GLNVFTTLA----DGAFNGLGRLSALDLRGAGLT  316 (332)
Q Consensus       272 --~~~~~~l~~L~~L~L--~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~  316 (332)
                        ...+...++|++|++  ++|.+....    ...+...++|+.|++++|.+.
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence              224455567788888  677777432    234555677888888888764

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.24  E-value=1.3e-07  Score=77.79  Aligned_cols=122  Identities=11%  Similarity=0.071  Sum_probs=59.2

Q ss_pred             chhhhcCCCCCcEEEeecC-cCcccC----CCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCcc
Q psy8550         151 VDSAIQFYSSLQHVDLSHN-QLVNIP----IRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDR  225 (332)
Q Consensus       151 l~~~~~~l~~L~~L~l~~~-~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  225 (332)
                      +...+...++|++|++++| .+....    ...+...++|++|++++|.+.......+.                    .
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~--------------------~   87 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALA--------------------E   87 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHH--------------------H
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHH--------------------H
Confidence            3445666677777777777 665321    12233445556666655555432111110                    1


Q ss_pred             ccCCCCCCcEeeccCCCCcccC----hhhcCCCCCCcEEeC--CCCCCCCcCc----ccccCCCCccEEEcCCCcCC
Q psy8550         226 LFAPLSHLEELDLGQNRISRID----QACFEGLTALRILYL--DDNQLRSVPT----PSFIYLGMLAELRVGLNVFT  292 (332)
Q Consensus       226 ~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L--~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~  292 (332)
                      .+...++|++|++++|.+....    ...+...+.|++|++  ++|.+.....    ..+...++|++|++++|.+.
T Consensus        88 ~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           88 MLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            1122234555555555544321    233444455666666  5566554221    12334456677777766654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.21  E-value=1.1e-06  Score=76.21  Aligned_cols=77  Identities=27%  Similarity=0.343  Sum_probs=34.6

Q ss_pred             CCCcEeeccCCCCcccCh--hhcCCCCCCcEEeCCCCCCCCcCcccccCCC--CccEEEcCCCcCCccCc-------hhc
Q psy8550         231 SHLEELDLGQNRISRIDQ--ACFEGLTALRILYLDDNQLRSVPTPSFIYLG--MLAELRVGLNVFTTLAD-------GAF  299 (332)
Q Consensus       231 ~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~-------~~~  299 (332)
                      ++|+.|+|++|.++.+.+  ..+..+++|+.|+|++|.++++.  .+..+.  +|+.|+|++|++.+..|       ..+
T Consensus       170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~--~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il  247 (267)
T 3rw6_A          170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER--ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR  247 (267)
T ss_dssp             TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG--GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred             CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch--hhhhcccCCcceEEccCCcCccccCcchhHHHHHH
Confidence            344444444444444321  22334455555555555555442  122222  55555555555554222       124


Q ss_pred             CCCCCCCEEE
Q psy8550         300 NGLGRLSALD  309 (332)
Q Consensus       300 ~~l~~L~~L~  309 (332)
                      ..+++|+.||
T Consensus       248 ~~~P~L~~LD  257 (267)
T 3rw6_A          248 ERFPKLLRLD  257 (267)
T ss_dssp             HHCTTCCEES
T ss_pred             HHCcccCeEC
Confidence            4455555554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.09  E-value=1.1e-06  Score=71.04  Aligned_cols=86  Identities=16%  Similarity=0.108  Sum_probs=46.9

Q ss_pred             CCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCC-CCCcCcccccCC----CCccEEEcCCC-cCCccCchhcCCCCCC
Q psy8550         232 HLEELDLGQNRISRIDQACFEGLTALRILYLDDNQ-LRSVPTPSFIYL----GMLAELRVGLN-VFTTLADGAFNGLGRL  305 (332)
Q Consensus       232 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l----~~L~~L~L~~n-~l~~~~~~~~~~l~~L  305 (332)
                      +|+.||++++.++...-..+..+++|++|+|++|. +++..-..++.+    ++|++|++++| +++..--..+.++++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            45566666665554444445556666666666663 443322233332    35667777666 3554333345566777


Q ss_pred             CEEEccCCC-CCC
Q psy8550         306 SALDLRGAG-LTN  317 (332)
Q Consensus       306 ~~L~Ls~n~-l~~  317 (332)
                      +.|++++|. ++.
T Consensus       142 ~~L~L~~c~~Itd  154 (176)
T 3e4g_A          142 KYLFLSDLPGVKE  154 (176)
T ss_dssp             CEEEEESCTTCCC
T ss_pred             CEEECCCCCCCCc
Confidence            777777763 443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.07  E-value=2.3e-06  Score=74.20  Aligned_cols=96  Identities=22%  Similarity=0.180  Sum_probs=68.5

Q ss_pred             eeccCCCCcccC---hhhcCCCCCCcEEeCCCCCCCCcCc--ccccCCCCccEEEcCCCcCCccCc-hhcCCCCCCCEEE
Q psy8550         236 LDLGQNRISRID---QACFEGLTALRILYLDDNQLRSVPT--PSFIYLGMLAELRVGLNVFTTLAD-GAFNGLGRLSALD  309 (332)
Q Consensus       236 L~L~~n~l~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~  309 (332)
                      ++++.|....+.   .....++++|+.|+|++|.+++++.  ..+..+++|+.|+|++|.+++... ..+..+ +|++|+
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~  226 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELW  226 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEE
Confidence            556666443331   1122457899999999999998763  456689999999999999998732 334444 999999


Q ss_pred             ccCCCCCCc-c------cccccCCCCcccC
Q psy8550         310 LRGAGLTNM-M------GHSMALGDYLHWI  332 (332)
Q Consensus       310 Ls~n~l~~l-~------~~~~~~l~~L~~l  332 (332)
                      |++|.+.+- +      ...++.++.|+.|
T Consensus       227 L~~Npl~~~~~~~~~y~~~il~~~P~L~~L  256 (267)
T 3rw6_A          227 LDGNSLCDTFRDQSTYISAIRERFPKLLRL  256 (267)
T ss_dssp             CTTSTTGGGCSSHHHHHHHHHHHCTTCCEE
T ss_pred             ccCCcCccccCcchhHHHHHHHHCcccCeE
Confidence            999999752 2      2346677777643

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.83  E-value=6.4e-06  Score=66.59  Aligned_cols=34  Identities=15%  Similarity=0.223  Sum_probs=16.7

Q ss_pred             CCcEEEcCCCcccccCccccCCCCCCCEEEccCC
Q psy8550         184 KLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGN  217 (332)
Q Consensus       184 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n  217 (332)
                      .|+.|++++|.++...-..+.++++|++|+|++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C   95 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC   95 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence            4555555555544433333444445555555544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.21  E-value=0.00062  Score=52.13  Aligned_cols=33  Identities=39%  Similarity=0.512  Sum_probs=13.4

Q ss_pred             CCEEEccCCCCCCCCccccCCCCCCcEeeccCC
Q psy8550         209 LKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQN  241 (332)
Q Consensus       209 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  241 (332)
                      +++|+|++|.++.++++.|..+++|+.|+|++|
T Consensus        33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN   65 (130)
T ss_dssp             CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred             CCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence            344444444444444433333344444444433

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.55  E-value=0.0016  Score=53.46  Aligned_cols=85  Identities=18%  Similarity=0.153  Sum_probs=37.3

Q ss_pred             CCCCcEEEcCCCcccccCcc----ccCCCCCCCEEEccCCCCCCCCc----cccCCCCCCcEeeccCCCC---ccc----
Q psy8550         182 QEKLVELQLNHNKLSSVNNK----TFIGLKSLKVLNLRGNFLEDLPD----RLFAPLSHLEELDLGQNRI---SRI----  246 (332)
Q Consensus       182 l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l---~~~----  246 (332)
                      -+.|+.|+|++|++......    ++..-+.|++|+|++|.+..-..    ..+..-+.|++|+|++|..   ..-    
T Consensus        69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~  148 (197)
T 1pgv_A           69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD  148 (197)
T ss_dssp             CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred             CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHH
Confidence            34455555555544432211    12223455555555555542111    1123334466666654422   211    


Q ss_pred             ChhhcCCCCCCcEEeCCCCC
Q psy8550         247 DQACFEGLTALRILYLDDNQ  266 (332)
Q Consensus       247 ~~~~~~~l~~L~~L~L~~n~  266 (332)
                      ....+..-+.|+.|+++.|.
T Consensus       149 ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          149 MMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHhCCCcCeEeccCCC
Confidence            01233444566777766554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.50  E-value=0.002  Score=52.94  Aligned_cols=113  Identities=18%  Similarity=0.136  Sum_probs=77.9

Q ss_pred             cCCCCCCCEEEccCC-CCCCCC----ccccCCCCCCcEeeccCCCCcccCh----hhcCCCCCCcEEeCCCCCCCCcCc-
Q psy8550         203 FIGLKSLKVLNLRGN-FLEDLP----DRLFAPLSHLEELDLGQNRISRIDQ----ACFEGLTALRILYLDDNQLRSVPT-  272 (332)
Q Consensus       203 ~~~l~~L~~L~L~~n-~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~-  272 (332)
                      +.+-+.|+.|+|++| .+..-.    ...+..-+.|+.|+|++|.+.....    +.+..-+.|++|+|++|.|..... 
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            445578999999985 665321    1234556789999999999885433    334456789999999999986432 


Q ss_pred             ---ccccCCCCccEEEcCCC---cCCcc----CchhcCCCCCCCEEEccCCCC
Q psy8550         273 ---PSFIYLGMLAELRVGLN---VFTTL----ADGAFNGLGRLSALDLRGAGL  315 (332)
Q Consensus       273 ---~~~~~l~~L~~L~L~~n---~l~~~----~~~~~~~l~~L~~L~Ls~n~l  315 (332)
                         ..+..-+.|+.|+|++|   .+...    +..++..-+.|+.|+++.|.+
T Consensus       117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence               23445567999999876   33422    234566668899999987653

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=88.63  E-value=1.2  Score=31.76  Aligned_cols=48  Identities=19%  Similarity=0.311  Sum_probs=31.8

Q ss_pred             CcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCC
Q psy8550         169 NQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGN  217 (332)
Q Consensus       169 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n  217 (332)
                      ..++.|...+|.++.+|+.+.+.. .++.+...+|.++.+|+.+.+.+.
T Consensus         6 ~~vt~I~~~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A            6 EPVVGMDKSLFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             CCCCSSCSCTTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECCS
T ss_pred             CccCEecHHHhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcCC
Confidence            345666667777777777777765 356666667777777777776543

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=85.17  E-value=2.1  Score=30.53  Aligned_cols=46  Identities=20%  Similarity=0.294  Sum_probs=23.4

Q ss_pred             cccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccC
Q psy8550         194 KLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQ  240 (332)
Q Consensus       194 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  240 (332)
                      .++.+...+|.++.+|+.+.+.. .++.+...+|.++.+|+.+.+.+
T Consensus         7 ~vt~I~~~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~   52 (100)
T 2lz0_A            7 PVVGMDKSLFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTG   52 (100)
T ss_dssp             CCCSSCSCTTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECC
T ss_pred             ccCEecHHHhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcC
Confidence            34445455555555555555543 34445555555555555555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	332
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-18
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.001
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-11
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	5e-11
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-10
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	3e-07
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	8e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.004
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	7e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	8e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.001
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.003

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.4 bits (199), Expect = 3e-18
 Identities = 61/229 (26%), Positives = 98/229 (42%), Gaps = 3/229 (1%)

Query: 107 CPPDCDCNDET-LVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTV-DSAIQFYSSLQ-H 163
           CP  C C +E  +  +C +  L  +P+ +  + QR+ L  NRI  V  ++ +   +L   
Sbjct: 2   CPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTIL 61

Query: 164 VDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLP 223
              S+                      ++ +L SV+  TF GL  L  L+L    L++L 
Sbjct: 62  WLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG 121

Query: 224 DRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAE 283
             LF  L+ L+ L L  N +  +    F  L  L  L+L  N++ SVP  +F  L  L  
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181

Query: 284 LRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHWI 332
           L +  N    +   AF  LGRL  L L    L+ +   ++A    L ++
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL 230

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (136), Expect = 5e-10
 Identities = 46/159 (28%), Positives = 67/159 (42%), Gaps = 3/159 (1%)

Query: 156 QFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLR 215
           +  ++LQ++ L  N L  +P   F     L  L L+ N++SSV  + F GL SL  L L 
Sbjct: 126 RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH 185

Query: 216 GNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSF 275
            N +  +    F  L  L  L L  N +S +       L AL+ L L+DN        + 
Sbjct: 186 QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC-RAR 244

Query: 276 IYLGMLAELRVGLNVFTTLADGAFNG--LGRLSALDLRG 312
                L + R   +           G  L RL+A DL+G
Sbjct: 245 PLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQG 283

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 76.2 bits (186), Expect = 2e-16
 Identities = 55/228 (24%), Positives = 96/228 (42%), Gaps = 33/228 (14%)

Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDL 166
           CP  C C+     V C +  L+ +P  L P    L                       DL
Sbjct: 4   CPFRCQCHLRV--VQCSDLGLEKVPKDLPPDTALL-----------------------DL 38

Query: 167 SHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRL 226
            +N++  I    F+  + L  L L +NK+S ++   F  L  L+ L L  N L++LP+++
Sbjct: 39  QNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM 98

Query: 227 FAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTP--SFIYLGMLAEL 284
              L  L   +   N I+++ ++ F GL  + ++ L  N L+S      +F  +  L+ +
Sbjct: 99  PKTLQELRVHE---NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 155

Query: 285 RVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHWI 332
           R+     TT+  G       L+ L L G  +T +   S+   + L  +
Sbjct: 156 RIADTNITTIPQGLPP---SLTELHLDGNKITKVDAASLKGLNNLAKL 200

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.3 bits (142), Expect = 1e-10
 Identities = 49/264 (18%), Positives = 98/264 (37%), Gaps = 15/264 (5%)

Query: 58  IIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDET 117
           I   + + L  L   I  +   S +S      L+    L L  +Q             E 
Sbjct: 46  IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQEL 105

Query: 118 LVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTV---DSAIQFYSSLQHVDLSHNQLVNI 174
            V   +   +          +  + L  N +K+    + A Q    L ++ ++   +  I
Sbjct: 106 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI 165

Query: 175 PIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLE 234
           P         L EL L+ NK++ V+  +  GL +L  L L  N +  + +   A   HL 
Sbjct: 166 PQGLPP---SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR 222

Query: 235 ELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELR--VGLNV-- 290
           EL L  N++ ++          ++++YL +N + ++ +  F   G   +     G+++  
Sbjct: 223 ELHLNNNKLVKVPGGLA-DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 281

Query: 291 ----FTTLADGAFNGLGRLSALDL 310
               +  +    F  +   +A+ L
Sbjct: 282 NPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.2 bits (121), Expect = 6e-08
 Identities = 41/217 (18%), Positives = 79/217 (36%), Gaps = 10/217 (4%)

Query: 55  SLLIIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCN 114
            L  +P ++    +      + +     S     + ++   L     ++S          
Sbjct: 90  QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149

Query: 115 DETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVD-SAIQFYSSLQHVDLSHNQLVN 173
            +   +   + N+  IP  L PS+  L L  N+I  VD ++++  ++L  + LS N +  
Sbjct: 150 KKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 209

Query: 174 IPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAP---- 229
           +          L EL LN+NKL  V        K ++V+ L  N +  +    F P    
Sbjct: 210 VDNGSLANTPHLRELHLNNNKLVKVPGGLA-DHKYIQVVYLHNNNISAIGSNDFCPPGYN 268

Query: 230 --LSHLEELDLGQNRIS--RIDQACFEGLTALRILYL 262
              +    + L  N +    I  + F  +     + L
Sbjct: 269 TKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 65.0 bits (157), Expect = 2e-12
 Identities = 49/185 (26%), Positives = 84/185 (45%), Gaps = 13/185 (7%)

Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
           D+ P+ +  ++  L L  N++K + + +   ++L  +DL++NQ+ N+         KL E
Sbjct: 211 DITPLGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLA--PLSGLTKLTE 267

Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
           L+L  N++S+++     GL +L  L L  N          + L +L  L L  N IS I 
Sbjct: 268 LKLGANQISNISP--LAGLTALTNLELNENQ--LEDISPISNLKNLTYLTLYFNNISDIS 323

Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSA 307
                 LT L+ L+  +N++  V   S   L  +  L  G N  + L       L R++ 
Sbjct: 324 P--VSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQISDLT--PLANLTRITQ 377

Query: 308 LDLRG 312
           L L  
Sbjct: 378 LGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 62.7 bits (151), Expect = 1e-11
 Identities = 30/138 (21%), Positives = 53/138 (38%), Gaps = 9/138 (6%)

Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
           ++ P++    +  L L  N+I  +             +L  N+     I      + L  
Sbjct: 255 NLAPLSGLTKLTELKLGANQISNI---SPLAGLTALTNLELNENQLEDISPISNLKNLTY 311

Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
           L L  N +S ++      L  L+ L    N + D+     A L+++  L  G N+IS + 
Sbjct: 312 LTLYFNNISDISP--VSSLTKLQRLFFANNKVSDVSS--LANLTNINWLSAGHNQISDLT 367

Query: 248 QACFEGLTALRILYLDDN 265
                 LT +  L L+D 
Sbjct: 368 --PLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 4e-04
 Identities = 10/79 (12%), Positives = 30/79 (37%), Gaps = 6/79 (7%)

Query: 183 EKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNR 242
            + ++  L    ++     +   L  +  L      ++ +       L++L +++   N+
Sbjct: 22  AEKMKTVLGKTNVTDT--VSQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQ 77

Query: 243 ISRIDQACFEGLTALRILY 261
           ++ I     + LT L  + 
Sbjct: 78  LTDITP--LKNLTKLVDIL 94

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 3/66 (4%)

Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
           D +  T    +  L      IK++D  +++ ++L  ++ S+NQL +I     +   KLV+
Sbjct: 36  DTVSQTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDIT--PLKNLTKLVD 92

Query: 188 LQLNHN 193
           + +N+N
Sbjct: 93  ILMNNN 98

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.3 bits (147), Expect = 2e-11
 Identities = 49/207 (23%), Positives = 74/207 (35%), Gaps = 7/207 (3%)

Query: 109 PDCDCNDET--LVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVD-SAIQFYSSLQHVD 165
           P C+ +     L V C + NL  +P  L      L L  N + T   + +  Y+ L  ++
Sbjct: 2   PICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 166 LSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDR 225
           L   +L  + + G  P    +      +            L +L VL++  N L  LP  
Sbjct: 62  LDRAELTKLQVDGTLPV---LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG 118

Query: 226 LFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELR 285
               L  L+EL L  N +  +          L  L L +N L  +P      L  L  L 
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 286 VGLNVFTTLADGAFNGLGRLSALDLRG 312
           +  N   T+  G F     L    L G
Sbjct: 179 LQENSLYTIPKGFFG-SHLLPFAFLHG 204

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 5e-04
 Identities = 30/161 (18%), Positives = 50/161 (31%), Gaps = 2/161 (1%)

Query: 58  IIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDET 117
                +    +L     D    + +       +L T  L     Q+              
Sbjct: 46  FSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVL 105

Query: 118 LVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDL-SHNQLVNIPI 176
            V   +  +L +  +     +Q L LK N +KT+   +   +        ++N L  +P 
Sbjct: 106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA 165

Query: 177 RGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGN 217
                 E L  L L  N L ++    F G   L    L GN
Sbjct: 166 GLLNGLENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGN 205

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 58.7 bits (140), Expect = 5e-11
 Identities = 47/164 (28%), Positives = 64/164 (39%), Gaps = 5/164 (3%)

Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKT--VDSAIQFYSSLQHV 164
           CP  C C   T  V C    L  IP  +      L+L  N +     D        L  +
Sbjct: 2   CPAMCHCEGTT--VDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKL 59

Query: 165 DLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPD 224
           +L  NQL  I    FE    + ELQL  NK+  ++NK F+GL  LK LNL  N +  +  
Sbjct: 60  ELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP 119

Query: 225 RLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLR 268
             F  L+ L  L+   +     +         LR   L+    R
Sbjct: 120 GSFEHLNSLTSLN-LASNPFNCNCHLAWFAEWLRKKSLNGGAAR 162

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 57.9 bits (138), Expect = 4e-10
 Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 12/98 (12%)

Query: 189 QLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQ 248
               N  S+          SL+ LN+  N L +LP         LE L    N ++ +  
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL----PPRLERLIASFNHLAEVP- 320

Query: 249 ACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRV 286
              E    L+ L+++ N LR  P         + +LR+
Sbjct: 321 ---ELPQNLKQLHVEYNPLREFPD----IPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 53.3 bits (126), Expect = 1e-08
 Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 12/84 (14%)

Query: 155 IQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNL 214
                SL+ +++S+N+L+ +P        +L  L  + N L+ V        ++LK L++
Sbjct: 280 CDLPPSLEELNVSNNKLIELP----ALPPRLERLIASFNHLAEVPEL----PQNLKQLHV 331

Query: 215 RGNFLEDLPDRLFAPLSHLEELDL 238
             N L + PD        +E+L +
Sbjct: 332 EYNPLREFPDI----PESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.9 bits (99), Expect = 3e-05
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 8/65 (12%)

Query: 207 KSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQ 266
           +    L L    L  LP+       HLE L    N ++ +     E   +L+ L +D+N 
Sbjct: 38  RQAHELELNNLGLSSLPELP----PHLESLVASCNSLTELP----ELPQSLKSLLVDNNN 89

Query: 267 LRSVP 271
           L+++ 
Sbjct: 90  LKALS 94

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.3 bits (95), Expect = 9e-05
 Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 8/66 (12%)

Query: 126 NLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKL 185
            L  +P    P ++RL+  +N +  V    Q   +L+ + + +N L   P    +  E +
Sbjct: 295 KLIELPALP-PRLERLIASFNHLAEVPELPQ---NLKQLHVEYNPLREFP----DIPESV 346

Query: 186 VELQLN 191
            +L++N
Sbjct: 347 EDLRMN 352

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.6 bits (110), Expect = 3e-07
 Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 6/108 (5%)

Query: 165 DLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPD 224
            L+H  L  +     E    +  L L+HN+L ++       L+ L+VL    N LE++  
Sbjct: 4   HLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVDG 60

Query: 225 RLFAPLSHLEELDLGQNRISRIDQ-ACFEGLTALRILYLDDNQLRSVP 271
               P   L+EL L  NR+ +            L +L L  N L    
Sbjct: 61  VANLP--RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 106

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.3 bits (104), Expect = 2e-06
 Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 6/105 (5%)

Query: 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKL 195
             +  L L +NR++ +  A+     L+ +  S N L N+   G     +L EL L +N+L
Sbjct: 20  LLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCNNRL 77

Query: 196 SSVNN-KTFIGLKSLKVLNLRGNFL---EDLPDRLFAPLSHLEEL 236
                 +  +    L +LNL+GN L   E + +RL   L  +  +
Sbjct: 78  QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (97), Expect = 2e-05
 Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 5/110 (4%)

Query: 139 QRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSV 198
           + L L +  +  +   ++    + H+DLSHN+L             L  LQ + N L +V
Sbjct: 1   RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNALENV 58

Query: 199 NNKTFIGLKSLKVLNLRGNFLEDLPD-RLFAPLSHLEELDLGQNRISRID 247
           +    +    L+ L L  N L+     +       L  L+L  N + + +
Sbjct: 59  DGVANL--PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 106

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 2e-04
 Identities = 25/110 (22%), Positives = 38/110 (34%), Gaps = 6/110 (5%)

Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
           L L H  L+ + +     L  +  L+L  N L  LP    A L  LE L    N +  +D
Sbjct: 3   LHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD 59

Query: 248 QACFEGLTALRILYLDDNQLRSVPTP-SFIYLGMLAELRVGLNVFTTLAD 296
                     + L L +N+L+        +    L  L +  N       
Sbjct: 60  GVANLPRL--QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 107

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (111), Expect = 3e-07
 Identities = 28/144 (19%), Positives = 48/144 (33%), Gaps = 5/144 (3%)

Query: 143 LKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKT 202
           LK  +++ +   +          L    L + P      Q   V L    +  +++    
Sbjct: 4   LKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDP--DLVAQNIDVVLNRRSSMAATLRI-I 60

Query: 203 FIGLKSLKVLNLRGNFLEDLPD--RLFAPLSHLEELDLGQNRISRIDQACFEGLTALRIL 260
              +  L  LNL  N L  L D   +     +L+ L+L  N +    +        L  L
Sbjct: 61  EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEEL 120

Query: 261 YLDDNQLRSVPTPSFIYLGMLAEL 284
           +LD N L         Y+  + E 
Sbjct: 121 WLDGNSLSDTFRDQSTYISAIRER 144

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (107), Expect = 2e-06
 Identities = 40/218 (18%), Positives = 69/218 (31%), Gaps = 8/218 (3%)

Query: 59  IPFEVRIL----NKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCN 114
           +P     L     KLR+    +  FS   D+    +     L ++     +  P   +  
Sbjct: 27  LPRNAIELRFVLTKLRVIQKGA--FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 84

Query: 115 DETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNI 174
            E               +     +         +  V         L  +  + N     
Sbjct: 85  IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE 144

Query: 175 PIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLE 234
                    + V L LN N +  ++N  F G +  ++     N LE+LP+ +F   S   
Sbjct: 145 RNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPV 204

Query: 235 ELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPT 272
            LD+ + RI  +     E L  LR        L+ +PT
Sbjct: 205 ILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 8e-06
 Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 4/66 (6%)

Query: 107 CP-PDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTV-DSAIQFYSSLQHV 164
           C    C C++      C+E+ +  IP  L  +   L     +++ +   A   +  L+ +
Sbjct: 1   CHHRICHCSNRV--FLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKI 58

Query: 165 DLSHNQ 170
           ++S N 
Sbjct: 59  EISQND 64

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (108), Expect = 3e-06
 Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 10/102 (9%)

Query: 160 SLQHVDLSHNQLVNIPIRGFEPQ-EKLVELQLNHNKLSSVNNKTFI----GLKSLKVLNL 214
            +Q +D+   +L +       P  ++   ++L+   L+    K          +L  LNL
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 215 RGNFLED-----LPDRLFAPLSHLEELDLGQNRISRIDQACF 251
           R N L D     +   L  P   +++L L    ++       
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL 104

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (104), Expect = 8e-06
 Identities = 26/99 (26%), Positives = 36/99 (36%), Gaps = 15/99 (15%)

Query: 179 FEPQEKLVELQLNHNKLSSVNNK----TFIGLKSLKVLNLRGNFLED-----LPDRLFAP 229
            +P   L  L L    +S  +      T +   SL+ L+L  N L D     L + +  P
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 230 LSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLR 268
              LE+L L     S       E    L+ L  D   LR
Sbjct: 425 GCLLEQLVLYDIYWSE------EMEDRLQALEKDKPSLR 457

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 1e-05
 Identities = 15/92 (16%), Positives = 31/92 (33%), Gaps = 10/92 (10%)

Query: 185 LVELQLNHNKLSSVNNKTFI-GLKSLKVLNLRGNFLEDLPDRLFAP----LSHLEELDLG 239
           +  L +   +LS       +  L+  +V+ L    L +   +  +        L EL+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 240 QNRIS-----RIDQACFEGLTALRILYLDDNQ 266
            N +       + Q        ++ L L +  
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (81), Expect = 0.004
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 14/92 (15%)

Query: 135 NPSIQRLVLKYNRI-----KTVDSAIQFYSSLQHVDLSHNQLVNIPIRGF-----EPQEK 184
              ++ L L    +      ++ + +    SL+ +DLS+N L +  I        +P   
Sbjct: 368 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCL 427

Query: 185 LVELQLNHNKLSSVNNKTFIGLK----SLKVL 212
           L +L L     S         L+    SL+V+
Sbjct: 428 LEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 2e-04
 Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 4/83 (4%)

Query: 156 QFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLR 215
                     LS        +       KL  L+ + NK+S ++      L +L  ++L+
Sbjct: 146 PLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLK 203

Query: 216 GNFLEDLPDRLFAPLSHLEELDL 238
            N + D+     A  S+L  + L
Sbjct: 204 NNQISDVSP--LANTSNLFIVTL 224

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 11/75 (14%)

Query: 189 QLNHNKLSS------VNNKTFIGLKSLKVLNLRGNFLED-----LPDRLFAPLSHLEELD 237
            LN   LS+      V+  + +    L+ L L+ N +E      L   +   +  L  L+
Sbjct: 249 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 308

Query: 238 LGQNRISRIDQACFE 252
           L  NR S  D    E
Sbjct: 309 LNGNRFSEEDDVVDE 323

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 36.0 bits (81), Expect = 0.004
 Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 5/68 (7%)

Query: 178 GFEPQEKLVELQLNHNKLS-----SVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSH 232
                  L  L+L +N++      ++       +  L  L L GN   +  D +      
Sbjct: 268 SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREV 327

Query: 233 LEELDLGQ 240
                 G+
Sbjct: 328 FSTRGRGE 335

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 38.6 bits (88), Expect = 7e-04
 Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 189 QLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLE-DLPDRLFAPLSHLEELDLGQNR 242
            L +N++     +    LK L  LN+  N L  ++P      L   +      N+
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNK 302

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 7e-04
 Identities = 21/152 (13%), Positives = 49/152 (32%), Gaps = 5/152 (3%)

Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVL---KYNRIKTVDS-AIQFYSSLQ 162
           CP  C  +  +  + C           L  +     L       ++ ++   ++    L+
Sbjct: 1   CPDACCPHGSS-GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELR 59

Query: 163 HVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDL 222
           ++ +  + L  +    F    +L  L L+ N L S++ KT  GL   +++          
Sbjct: 60  NLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSC 119

Query: 223 PDRLFAPLSHLEELDLGQNRISRIDQACFEGL 254
             R            + + ++    Q     +
Sbjct: 120 ALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHM 151

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 8e-04
 Identities = 37/194 (19%), Positives = 63/194 (32%), Gaps = 45/194 (23%)

Query: 109 PDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSH 168
            D    +       K++  D +      SI +++   + IK+V   IQ+  ++  + L+ 
Sbjct: 19  SDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNG 77

Query: 169 NQLVNIPIRGFEPQEKLVELQLNHNKLSSV------------------------------ 198
           N+L +I           + L  N  K  S                               
Sbjct: 78  NKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE 137

Query: 199 ----------NNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQ 248
                     +      L  L  L+L  N + D+     A L+ L+ L L +N IS +  
Sbjct: 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR- 194

Query: 249 ACFEGLTALRILYL 262
               GL  L +L L
Sbjct: 195 -ALAGLKNLDVLEL 207

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.001
 Identities = 28/142 (19%), Positives = 55/142 (38%), Gaps = 5/142 (3%)

Query: 130 IPITLNPS-IQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVEL 188
                N    + L L+  +I  +++          +D S N++  +   GF    +L  L
Sbjct: 11  AAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTL 68

Query: 189 QLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLF-APLSHLEELDLGQNRISRID 247
            +N+N++  +       L  L  L L  N L +L D    A L  L  L + +N ++   
Sbjct: 69  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 128

Query: 248 QACFEGLTALRIL-YLDDNQLR 268
                 +  +  +  LD  +++
Sbjct: 129 HYRLYVIYKVPQVRVLDFQKVK 150

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 35.8 bits (81), Expect = 0.003
 Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 5/69 (7%)

Query: 195 LSSVNNKTFIGLKSLKVLNLRGNF--LEDLPDRLFAPLSHLEELDLGQNRISRIDQACFE 252
           +     +  +     + + L G    +E +   L + L   + L L  N I +I      
Sbjct: 11  IRIFEERKSVVATEAEKVELHGMIPPIEKMDATL-STLKACKHLALSTNNIEKIS--SLS 67

Query: 253 GLTALRILY 261
           G+  LRIL 
Sbjct: 68  GMENLRILS 76

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	332
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.98
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.96
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.96
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.94
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.91
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.89
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.88
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.86
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.84
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.83
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.82
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.82
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.81
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.8
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.79
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.79
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.77
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.69
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.67
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.66
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.64
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.64
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.62
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.59
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.5
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.45
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.45
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.41
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.35
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.3
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.08
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.67
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.54
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.54
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.5
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.53
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.43
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.8
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.21

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.9e-31  Score=234.99  Aligned_cols=227  Identities=30%  Similarity=0.436  Sum_probs=211.7

Q ss_pred             CCCCCCcccC-CCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCCC
Q psy8550         106 FCPPDCDCND-ETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQE  183 (332)
Q Consensus       106 ~~p~~c~c~~-~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~  183 (332)
                      +||..|.|.. ....+.|.+.+++++|..+++++++|+|++|+|+.+|+ +|.++++|++|++++|.+..+++..+..+.
T Consensus         1 ~cp~~C~C~~~~~~~v~c~~~~L~~iP~~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~   80 (284)
T d1ozna_           1 PCPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA   80 (284)
T ss_dssp             CCCTTCEEECSSSCEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             CcCCCCEEcCCCCeEEEcCCCCCCccCCCCCCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccc
Confidence            5999999964 45589999999999999999999999999999999997 799999999999999999999999999999


Q ss_pred             CCcEEEcC-CCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeC
Q psy8550         184 KLVELQLN-HNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYL  262 (332)
Q Consensus       184 ~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  262 (332)
                      .+..+... .+.++.+++..|.++++|++|++++|.+..++...+....+|+.+++++|.++.+++..|..+++|++|++
T Consensus        81 ~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l  160 (284)
T d1ozna_          81 LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL  160 (284)
T ss_dssp             TCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cccccccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhccc
Confidence            99998875 67888898999999999999999999999988888888999999999999999998888999999999999


Q ss_pred             CCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCcccC
Q psy8550         263 DDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHWI  332 (332)
Q Consensus       263 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~l  332 (332)
                      ++|++.++++..|.++++|+.+++++|+++++.|.+|.++++|++||+++|+++++++.+|+.++.|++|
T Consensus       161 ~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L  230 (284)
T d1ozna_         161 HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL  230 (284)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEE
T ss_pred             ccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEE
Confidence            9999999999999999999999999999999999999999999999999999999999999999888753

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.5e-28  Score=211.98  Aligned_cols=205  Identities=26%  Similarity=0.303  Sum_probs=187.2

Q ss_pred             CCCcccC--CCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCCCCC
Q psy8550         109 PDCDCND--ETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKL  185 (332)
Q Consensus       109 ~~c~c~~--~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L  185 (332)
                      +.|.|..  ....|+|.+.+++++|.++++++++|+|++|.|+.+|+ +|.++++|++|++++|+++.++  .++.+++|
T Consensus         2 ~~C~~~~~~~~~~v~C~~~~L~~iP~~lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~--~~~~l~~L   79 (266)
T d1p9ag_           2 PICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVL   79 (266)
T ss_dssp             CSSEEECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--CCSCCTTC
T ss_pred             CccEEcccCCCeEEEccCCCCCeeCcCcCcCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc--cccccccc
Confidence            3567754  45679999999999999999999999999999999986 7899999999999999999886  35789999


Q ss_pred             cEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCC
Q psy8550         186 VELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDN  265 (332)
Q Consensus       186 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  265 (332)
                      ++|++++|+++.. +..+.++++|++|++++|.+..+++..+..+.+++.|++++|.++.+++..+..++.++.+++++|
T Consensus        80 ~~L~Ls~N~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N  158 (266)
T d1p9ag_          80 GTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN  158 (266)
T ss_dssp             CEEECCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             ccccccccccccc-ccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccc
Confidence            9999999999987 567889999999999999999999988899999999999999999999998999999999999999


Q ss_pred             CCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCC
Q psy8550         266 QLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN  317 (332)
Q Consensus       266 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  317 (332)
                      +++++++..|+.+++|++|+|++|+|+.+++ .+..+++|+.|+|++|.+..
T Consensus       159 ~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~-~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         159 NLTELPAGLLNGLENLDTLLLQENSLYTIPK-GFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCCCSEEECCSCCBCC
T ss_pred             cccccCccccccccccceeecccCCCcccCh-hHCCCCCCCEEEecCCCCCC
Confidence            9999999899999999999999999997766 56678999999999998764

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=9.8e-28  Score=213.01  Aligned_cols=215  Identities=26%  Similarity=0.438  Sum_probs=179.7

Q ss_pred             CCCCCCCcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCCC
Q psy8550         105 AFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQE  183 (332)
Q Consensus       105 ~~~p~~c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~  183 (332)
                      ..||..|.|...  .++|.+..++++|.++++++++|++++|+|+.+|+ +|.++++|++|++++|.+..+++..|..++
T Consensus         2 ~~~p~~c~c~~~--~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~   79 (305)
T d1xkua_           2 PVCPFRCQCHLR--VVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV   79 (305)
T ss_dssp             CCCCTTCEEETT--EEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCT
T ss_pred             CCCCCCCEecCC--EEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCC
Confidence            469999999654  69999999999999999999999999999999997 799999999999999999999989999999


Q ss_pred             CCcEEEcCCCcccccCcc-----------------------------------------------ccCCCCCCCEEEccC
Q psy8550         184 KLVELQLNHNKLSSVNNK-----------------------------------------------TFIGLKSLKVLNLRG  216 (332)
Q Consensus       184 ~L~~L~l~~n~l~~~~~~-----------------------------------------------~~~~l~~L~~L~L~~  216 (332)
                      +|++|++++|+++.++..                                               .+..+++|+.+++++
T Consensus        80 ~L~~L~l~~n~l~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~  159 (305)
T d1xkua_          80 KLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD  159 (305)
T ss_dssp             TCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS
T ss_pred             ccCEecccCCccCcCccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCcccccc
Confidence            999999999887655322                                               122345667777777


Q ss_pred             CCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCc
Q psy8550         217 NFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD  296 (332)
Q Consensus       217 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  296 (332)
                      |.+..++...   +++|+.|++++|......+..+.+++.++.|++++|.+.++++..+..+++|++|+|++|+++.+++
T Consensus       160 n~l~~l~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~  236 (305)
T d1xkua_         160 TNITTIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG  236 (305)
T ss_dssp             SCCCSCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT
T ss_pred             CCccccCccc---CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccccccc
Confidence            7777666543   4677888888888777777778888888889999998888888888888899999999998888754


Q ss_pred             hhcCCCCCCCEEEccCCCCCCcccccccC
Q psy8550         297 GAFNGLGRLSALDLRGAGLTNMMGHSMAL  325 (332)
Q Consensus       297 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~  325 (332)
                       +|.++++|++|+|++|+|++++...|..
T Consensus       237 -~l~~l~~L~~L~Ls~N~i~~i~~~~f~~  264 (305)
T d1xkua_         237 -GLADHKYIQVVYLHNNNISAIGSNDFCP  264 (305)
T ss_dssp             -TTTTCSSCCEEECCSSCCCCCCTTSSSC
T ss_pred             -ccccccCCCEEECCCCccCccChhhccC
Confidence             7888889999999999998888777653

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=8.6e-26  Score=193.61  Aligned_cols=224  Identities=21%  Similarity=0.334  Sum_probs=190.7

Q ss_pred             CCCC-CcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcc-cCCCCCCCCC
Q psy8550         107 CPPD-CDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVN-IPIRGFEPQE  183 (332)
Q Consensus       107 ~p~~-c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~-~~~~~~~~l~  183 (332)
                      |+.. |.|..  ..+.|.+..++++|.++++++++|++++|.++.+|. .|.++++|++|++++|.+.. +++.+|.+++
T Consensus         1 ~~~~~C~C~~--~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~   78 (242)
T d1xwdc1           1 CHHRICHCSN--RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP   78 (242)
T ss_dssp             CCCSSEEECS--SEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCT
T ss_pred             CcCCcCCCcC--CEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccc
Confidence            4543 88865  479999999999999999999999999999999988 78999999999999998765 6777899999


Q ss_pred             CCcEEEcC-CCcccccCccccCCCCCCCEEEccCCCCCCCCccc-cCCCCCCcEeeccCCCCcccChhhcCCCC-CCcEE
Q psy8550         184 KLVELQLN-HNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRL-FAPLSHLEELDLGQNRISRIDQACFEGLT-ALRIL  260 (332)
Q Consensus       184 ~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L  260 (332)
                      +++++.+. .|.+....+..|.++++|+++++++|.+...++.. +..+..+..+...++.+..+.+..+..++ .++.+
T Consensus        79 ~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L  158 (242)
T d1xwdc1          79 KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVIL  158 (242)
T ss_dssp             TCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEE
T ss_pred             ccccccccccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceee
Confidence            99999886 57888888899999999999999999998776532 34456666777788889988887777765 78899


Q ss_pred             eCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCcccC
Q psy8550         261 YLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHWI  332 (332)
Q Consensus       261 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~l  332 (332)
                      ++++|+++.++...+......+.+++++|+++.+++..|.++++|++|++++|+++++++..|..++.|+.+
T Consensus       159 ~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l  230 (242)
T d1xwdc1         159 WLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR  230 (242)
T ss_dssp             ECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESS
T ss_pred             ecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccC
Confidence            999999999988666544334445678899999999889999999999999999999999999999988754

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=7.2e-25  Score=190.74  Aligned_cols=190  Identities=25%  Similarity=0.335  Sum_probs=171.6

Q ss_pred             CCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEcc
Q psy8550         136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLR  215 (332)
Q Consensus       136 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  215 (332)
                      .++.+++.+++.++.+|+.+.  +++++|++++|.|+.+++.+|.++++|++|++++|+++.+++  ++.+++|++|+++
T Consensus        10 ~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~--~~~l~~L~~L~Ls   85 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLS   85 (266)
T ss_dssp             TTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECC
T ss_pred             CCCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc--ccccccccccccc
Confidence            345667899999999997654  589999999999999998899999999999999999998854  6789999999999


Q ss_pred             CCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccC
Q psy8550         216 GNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA  295 (332)
Q Consensus       216 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  295 (332)
                      +|+++..++. +..+++|+.|++++|.+..+.+..+..+.+++.|++++|.+..+++..+..+++++.+++++|++++++
T Consensus        86 ~N~l~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~  164 (266)
T d1p9ag_          86 HNQLQSLPLL-GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP  164 (266)
T ss_dssp             SSCCSSCCCC-TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred             cccccccccc-cccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccC
Confidence            9999988765 688999999999999999998888999999999999999999999988999999999999999999999


Q ss_pred             chhcCCCCCCCEEEccCCCCCCcccccccCCCCccc
Q psy8550         296 DGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHW  331 (332)
Q Consensus       296 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~  331 (332)
                      +..|..+++|++|||++|+|+++|+..|. ++.|++
T Consensus       165 ~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~-~~~L~~  199 (266)
T d1p9ag_         165 AGLLNGLENLDTLLLQENSLYTIPKGFFG-SHLLPF  199 (266)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCCCSE
T ss_pred             ccccccccccceeecccCCCcccChhHCC-CCCCCE
Confidence            99999999999999999999999886664 555654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.2e-23  Score=184.51  Aligned_cols=203  Identities=28%  Similarity=0.354  Sum_probs=187.0

Q ss_pred             CCceEEecCCCccccCCCCC---CCccEEEeecCCCccchh-hhcCCCCCcEEEee-cCcCcccCCCCCCCCCCCcEEEc
Q psy8550         116 ETLVVTCKEANLDVIPITLN---PSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLS-HNQLVNIPIRGFEPQEKLVELQL  190 (332)
Q Consensus       116 ~~~~~~c~~~~l~~lp~~~~---~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~-~~~l~~~~~~~~~~l~~L~~L~l  190 (332)
                      ..+.++.+++.++.+|....   +++++|++++|.+..++. .+..+..++.+... .+.++.+++..|.++++|++|++
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l  112 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence            34679999999999997532   789999999999998777 77788999998875 56788998899999999999999


Q ss_pred             CCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCc
Q psy8550         191 NHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSV  270 (332)
Q Consensus       191 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  270 (332)
                      ++|.+..+.+..+....+|+.+++++|.++.+++..|..+++|+.|++++|.++.+++..|.++++|+.+++++|+++++
T Consensus       113 ~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i  192 (284)
T d1ozna_         113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV  192 (284)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcccccc
Confidence            99999999888899999999999999999999999899999999999999999999999999999999999999999999


Q ss_pred             CcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCc
Q psy8550         271 PTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNM  318 (332)
Q Consensus       271 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l  318 (332)
                      .+..|..+++|++|++++|++.++++.+|+++++|++|++++|.+.+.
T Consensus       193 ~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~  240 (284)
T d1ozna_         193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD  240 (284)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             ChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCC
Confidence            998999999999999999999999999999999999999999988753

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=3.9e-23  Score=183.02  Aligned_cols=267  Identities=19%  Similarity=0.206  Sum_probs=223.6

Q ss_pred             CCCCCCCC---CccCCchhhHhhhhccch-hhhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy8550          36 PGFQNNPK---SNFKSPTEILKSLLIIPF-EVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDC  111 (332)
Q Consensus        36 ~g~~~~p~---~~~~~~~~~~~~l~~iP~-~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~c  111 (332)
                      .+..++|.   ..++.+++....++.+|+ +|..+.+|+.++++++......+                        ...
T Consensus        20 ~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~------------------------~~f   75 (305)
T d1xkua_          20 LGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP------------------------GAF   75 (305)
T ss_dssp             SCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCT------------------------TTT
T ss_pred             CCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccch------------------------hhh
Confidence            34555554   345677777778899997 59999999999999887776632                        222


Q ss_pred             cccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCc--ccCCCCCCCCCCCcEE
Q psy8550         112 DCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLV--NIPIRGFEPQEKLVEL  188 (332)
Q Consensus       112 ~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~--~~~~~~~~~l~~L~~L  188 (332)
                      .....+..+.+.++.++.+|......+..|++.+|.+..++. .+.....++.++...+...  ......|..+++|+.+
T Consensus        76 ~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l  155 (305)
T d1xkua_          76 APLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI  155 (305)
T ss_dssp             TTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEE
T ss_pred             hCCCccCEecccCCccCcCccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCcc
Confidence            344567789999999999999988999999999999998877 6778888899998887543  3344678889999999


Q ss_pred             EcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCC
Q psy8550         189 QLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLR  268 (332)
Q Consensus       189 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  268 (332)
                      ++++|.+..++..   ..++|+.|++++|.....++..|..++.++.|++++|.++.+++..+.++++|++|++++|+++
T Consensus       156 ~l~~n~l~~l~~~---~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~  232 (305)
T d1xkua_         156 RIADTNITTIPQG---LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV  232 (305)
T ss_dssp             ECCSSCCCSCCSS---CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS
T ss_pred             ccccCCccccCcc---cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc
Confidence            9999999887433   3578999999999999888888899999999999999999999999999999999999999999


Q ss_pred             CcCcccccCCCCccEEEcCCCcCCccCchhc------CCCCCCCEEEccCCCCC--CcccccccCCCCcc
Q psy8550         269 SVPTPSFIYLGMLAELRVGLNVFTTLADGAF------NGLGRLSALDLRGAGLT--NMMGHSMALGDYLH  330 (332)
Q Consensus       269 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~------~~l~~L~~L~Ls~n~l~--~l~~~~~~~l~~L~  330 (332)
                      .+|. .+..+++|+.|++++|+++.+....|      ..+.+|+.|++++|.++  .++|..|..+....
T Consensus       233 ~lp~-~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~~~~~  301 (305)
T d1xkua_         233 KVPG-GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA  301 (305)
T ss_dssp             SCCT-TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGG
T ss_pred             cccc-ccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHhcccccCc
Confidence            9976 78899999999999999998866554      45688999999999876  79999999887654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.91  E-value=1.9e-24  Score=178.85  Aligned_cols=137  Identities=31%  Similarity=0.505  Sum_probs=108.0

Q ss_pred             CCCCCCcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCcc-chh-hhcCCCCCcEEEeecCcCcccCCCCCCCCC
Q psy8550         106 FCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKT-VDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQE  183 (332)
Q Consensus       106 ~~p~~c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~-l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~  183 (332)
                      .||..|.|...  .++|+++.++.+|.++++++++|+|++|.|+. ++. .|.++++|++|++++|.+..+++..|..++
T Consensus         1 ~CP~~C~C~~~--~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~   78 (192)
T d1w8aa_           1 DCPAMCHCEGT--TVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS   78 (192)
T ss_dssp             CCCTTSEEETT--EEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT
T ss_pred             CcCCCCEEcCC--EEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccccc
Confidence            49999999765  79999999999999999999999999998874 433 667778888888888877777777777777


Q ss_pred             CCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCc
Q psy8550         184 KLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRIS  244 (332)
Q Consensus       184 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  244 (332)
                      +|++|++++|+++.+++.+|.++++|++|+|++|.++.++++.|..+++|+++++++|.+.
T Consensus        79 ~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          79 HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             ccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            7777777777777777777777777777777777777777776666677777777666654

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.89  E-value=5.6e-24  Score=189.26  Aligned_cols=253  Identities=17%  Similarity=0.159  Sum_probs=153.1

Q ss_pred             CCCCCCCCCCc---cCCchhhHhhh---hccchhhhhhhhhhhhhcCc-cccchhhhhHHHHHHHHHHHHHHhhcCCCCC
Q psy8550          35 HPGFQNNPKSN---FKSPTEILKSL---LIIPFEVRILNKLRIFINDS-VLFSSVSDITMWSLLVTTALLLLVHQASAFC  107 (332)
Q Consensus        35 ~~g~~~~p~~~---~~~~~~~~~~l---~~iP~~~~~l~~L~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (332)
                      |.|+..-....   ++.+++....+   ..+|+++++|++|+.|++++ +.+.+..                        
T Consensus        38 w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~i------------------------   93 (313)
T d1ogqa_          38 WLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPI------------------------   93 (313)
T ss_dssp             STTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCC------------------------
T ss_pred             CCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccc------------------------
Confidence            56765433222   34444444444   36899999999999988875 5565442                        


Q ss_pred             CCCCcccCCCceEEecCCCccccCCCCC---CCccEEEeecCCCc-cchhhhcCCCCCcEEEeecCcCcccCCCCCCCCC
Q psy8550         108 PPDCDCNDETLVVTCKEANLDVIPITLN---PSIQRLVLKYNRIK-TVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQE  183 (332)
Q Consensus       108 p~~c~c~~~~~~~~c~~~~l~~lp~~~~---~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~  183 (332)
                      |+.......+++++.+++.+..++....   ..++.+++++|.+. .+|..+.++++++++++++|.+.+..|..+..+.
T Consensus        94 P~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~  173 (313)
T d1ogqa_          94 PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS  173 (313)
T ss_dssp             CGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCC
T ss_pred             ccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccccc
Confidence            2222334445566666666655443322   45666666666554 4555666666666666666666654445555554


Q ss_pred             CC-cEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeC
Q psy8550         184 KL-VELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYL  262 (332)
Q Consensus       184 ~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  262 (332)
                      .+ +.+++++|++++..|..+..+.. ..+++.++......+..+..+++++.+++++|.+....+ .+..+++|+.|++
T Consensus       174 ~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~L  251 (313)
T d1ogqa_         174 KLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDL  251 (313)
T ss_dssp             TTCCEEECCSSEEEEECCGGGGGCCC-SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEEC
T ss_pred             cccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccc-ccccccccccccC
Confidence            43 66666666666666655555433 356666666655555555666666777776666655433 3566666777777


Q ss_pred             CCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCC
Q psy8550         263 DDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAG  314 (332)
Q Consensus       263 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  314 (332)
                      ++|++++..|..++.+++|++|+|++|+++|.+| .++++++|+.+++++|+
T Consensus       252 s~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP-~~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         252 RNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             CSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC-CSTTGGGSCGGGTCSSS
T ss_pred             ccCeecccCChHHhCCCCCCEEECcCCcccccCC-CcccCCCCCHHHhCCCc
Confidence            7777665444466666677777777777766555 34566666666677665

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.88  E-value=1.7e-22  Score=179.57  Aligned_cols=210  Identities=18%  Similarity=0.161  Sum_probs=164.8

Q ss_pred             eEEecCCCcc---ccCCCCC--CCccEEEeec-CCCc-cchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcC
Q psy8550         119 VVTCKEANLD---VIPITLN--PSIQRLVLKY-NRIK-TVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLN  191 (332)
Q Consensus       119 ~~~c~~~~l~---~lp~~~~--~~L~~L~l~~-~~l~-~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~  191 (332)
                      .++..++.+.   .+|..+.  ++|++|++++ |.+. .+|+.++++++|++|++++|++.++.+..+..+.+|+.++++
T Consensus        54 ~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~  133 (313)
T d1ogqa_          54 NLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS  133 (313)
T ss_dssp             EEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECC
T ss_pred             EEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccc
Confidence            4555665555   4676665  7999999986 6777 899999999999999999999999888888889999999999


Q ss_pred             CCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCC-cEeeccCCCCccc-----------------------C
Q psy8550         192 HNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHL-EELDLGQNRISRI-----------------------D  247 (332)
Q Consensus       192 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~-----------------------~  247 (332)
                      +|.+....|..+.++++++.+++++|.+....+..+..+..+ +.+++++|++++.                       .
T Consensus       134 ~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~  213 (313)
T d1ogqa_         134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDA  213 (313)
T ss_dssp             SSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECC
T ss_pred             cccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999888888889999999999999998874433334455544 6666666655433                       3


Q ss_pred             hhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCC
Q psy8550         248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGD  327 (332)
Q Consensus       248 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~  327 (332)
                      +..+..+++++.+++++|.+.+.++ .++.+++++.|++++|++++..|..|+++++|++|||++|+|++..|. ++.+.
T Consensus       214 ~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~  291 (313)
T d1ogqa_         214 SVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQ  291 (313)
T ss_dssp             GGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGG
T ss_pred             ccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCC
Confidence            4445666788888888888887665 678889999999999999988888999999999999999999954443 34444


Q ss_pred             Ccc
Q psy8550         328 YLH  330 (332)
Q Consensus       328 ~L~  330 (332)
                      .|+
T Consensus       292 ~L~  294 (313)
T d1ogqa_         292 RFD  294 (313)
T ss_dssp             GSC
T ss_pred             CCC
Confidence            443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.86  E-value=6.4e-21  Score=173.22  Aligned_cols=182  Identities=21%  Similarity=0.343  Sum_probs=156.4

Q ss_pred             CCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEcc
Q psy8550         136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLR  215 (332)
Q Consensus       136 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  215 (332)
                      ++++.+++++|.++.+++ ....++|++|++++|.++.++  .+..+++|+.|++++|.++++.+  +..+++|++|+++
T Consensus       197 ~~~~~l~l~~n~i~~~~~-~~~~~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~  271 (384)
T d2omza2         197 TNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG  271 (384)
T ss_dssp             TTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECC
T ss_pred             cccceeeccCCccCCCCc-ccccCCCCEEECCCCCCCCcc--hhhcccccchhccccCccCCCCc--ccccccCCEeecc
Confidence            678899999999988765 567789999999999988864  57788999999999999998765  7788999999999


Q ss_pred             CCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccC
Q psy8550         216 GNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA  295 (332)
Q Consensus       216 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  295 (332)
                      ++.++.+++  +..+..++.+++..|.++.+..  +..+++++.|++++|+++++++  +..+++|++|++++|++++++
T Consensus       272 ~~~l~~~~~--~~~~~~l~~l~~~~n~l~~~~~--~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~l~  345 (384)
T d2omza2         272 ANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDVS  345 (384)
T ss_dssp             SSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCG
T ss_pred             CcccCCCCc--cccccccccccccccccccccc--cchhcccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCCCh
Confidence            999998876  5778899999999999887633  6778899999999999998864  788999999999999998864


Q ss_pred             chhcCCCCCCCEEEccCCCCCCcccccccCCCCcccC
Q psy8550         296 DGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHWI  332 (332)
Q Consensus       296 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~l  332 (332)
                        .++++++|++|++++|+++++++  ++.+++|+.|
T Consensus       346 --~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L  378 (384)
T d2omza2         346 --SLANLTNINWLSAGHNQISDLTP--LANLTRITQL  378 (384)
T ss_dssp             --GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEE
T ss_pred             --hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEe
Confidence              58899999999999999999876  7778877653

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.84  E-value=3.2e-20  Score=157.14  Aligned_cols=182  Identities=25%  Similarity=0.411  Sum_probs=146.1

Q ss_pred             CCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEcc
Q psy8550         136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLR  215 (332)
Q Consensus       136 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  215 (332)
                      .+++.|++.+|.++.++ .+.++++|++|++++|.+..+.+  +..+++++++++++|.++.+.  .+.++++|+.++++
T Consensus        41 ~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i~--~l~~l~~L~~l~l~  115 (227)
T d1h6ua2          41 DGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLT  115 (227)
T ss_dssp             HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG--GGTTCTTCCEEECT
T ss_pred             CCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeecccc--ccccccccccccccccccccc--cccccccccccccc
Confidence            57888888888888884 58888999999999998887753  788889999999988888763  47788899999998


Q ss_pred             CCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccC
Q psy8550         216 GNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA  295 (332)
Q Consensus       216 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  295 (332)
                      ++....+++  +...+.+..+.++++.+....+  +...++|+.|++++|.+.+..+  ++.+++|+.|++++|++++++
T Consensus       116 ~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~Ls~n~l~~l~  189 (227)
T d1h6ua2         116 STQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDIS  189 (227)
T ss_dssp             TSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG
T ss_pred             cccccccch--hccccchhhhhchhhhhchhhh--hccccccccccccccccccchh--hcccccceecccCCCccCCCh
Confidence            888777655  4667888888888887776533  5667888999999888877654  778889999999999888865


Q ss_pred             chhcCCCCCCCEEEccCCCCCCcccccccCCCCcccC
Q psy8550         296 DGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHWI  332 (332)
Q Consensus       296 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~l  332 (332)
                      +  ++++++|++|++++|+++++++  ++.+++|+.|
T Consensus       190 ~--l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L  222 (227)
T d1h6ua2         190 P--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIV  222 (227)
T ss_dssp             G--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEE
T ss_pred             h--hcCCCCCCEEECcCCcCCCCcc--cccCCCCCEE
Confidence            4  7788899999999999988875  7777777653

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.83  E-value=4.9e-20  Score=152.86  Aligned_cols=176  Identities=23%  Similarity=0.313  Sum_probs=134.3

Q ss_pred             EeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCC
Q psy8550         142 VLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLED  221 (332)
Q Consensus       142 ~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  221 (332)
                      .++.+.++.... ...+.++++|++++|.+..+.  .+..+++|++|++++|+++++.+  ++++++|++|++++|.+..
T Consensus        24 ~l~~~~~~~~~~-~~~l~~l~~L~l~~~~i~~l~--~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~   98 (199)
T d2omxa2          24 VLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD   98 (199)
T ss_dssp             HTTCSSTTSEEC-HHHHTTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred             HhCCCCCCCccC-HHHhcCCCEEECCCCCCCCcc--ccccCCCcCcCccccccccCccc--ccCCccccccccccccccc
Confidence            344444443322 234567788888888887764  46778888888888888887754  7788888888888888887


Q ss_pred             CCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCC
Q psy8550         222 LPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNG  301 (332)
Q Consensus       222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  301 (332)
                      +++  ++.+++|+.+++++|.+..+.+  +..+++|+.|++++|++..++  .+..+++++.|++.+|+++++.+  +++
T Consensus        99 ~~~--l~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~--~l~~~~~L~~L~l~~n~l~~l~~--l~~  170 (199)
T d2omxa2          99 ITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFSSNQVTDLKP--LAN  170 (199)
T ss_dssp             CGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCGG--GTT
T ss_pred             ccc--cccccccccccccccccccccc--cchhhhhHHhhhhhhhhcccc--cccccccccccccccccccCCcc--ccC
Confidence            765  6788888888888888776533  677888888899888887765  47778888999999998888754  788


Q ss_pred             CCCCCEEEccCCCCCCcccccccCCCCcccC
Q psy8550         302 LGRLSALDLRGAGLTNMMGHSMALGDYLHWI  332 (332)
Q Consensus       302 l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~l  332 (332)
                      +++|+.|++++|++++++  .++.+++|+.|
T Consensus       171 l~~L~~L~ls~N~i~~i~--~l~~L~~L~~L  199 (199)
T d2omxa2         171 LTTLERLDISSNKVSDIS--VLAKLTNLESL  199 (199)
T ss_dssp             CTTCCEEECCSSCCCCCG--GGGGCTTCSEE
T ss_pred             CCCCCEEECCCCCCCCCc--cccCCCCCCcC
Confidence            889999999999988875  47778888764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.82  E-value=9.5e-20  Score=152.39  Aligned_cols=164  Identities=32%  Similarity=0.450  Sum_probs=119.4

Q ss_pred             CCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEcc
Q psy8550         136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLR  215 (332)
Q Consensus       136 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  215 (332)
                      .++++|+++++.++.++. +..+++|++|++++|+++.+++  ++.+++|++|++++|+++.++  .+.++++|+.|+++
T Consensus        46 ~~L~~L~l~~~~i~~l~~-l~~l~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSLE  120 (210)
T ss_dssp             HTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG--GGTTCTTCCEEECT
T ss_pred             cCccEEECcCCCCCCchh-HhhCCCCCEEeCCCccccCccc--cccCccccccccccccccccc--cccccccccccccc
Confidence            467777888877777653 6777888888888888777653  567778888888888777763  36777788888888


Q ss_pred             CCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccC
Q psy8550         216 GNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA  295 (332)
Q Consensus       216 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  295 (332)
                      +|.+..++.  +..+++++.+++++|.++...  .+..+++|+.+++++|+++++++  ++.+++|+.|++++|++++++
T Consensus       121 ~~~~~~~~~--l~~l~~l~~l~~~~n~l~~~~--~~~~l~~L~~l~l~~n~l~~i~~--l~~l~~L~~L~Ls~N~i~~l~  194 (210)
T d1h6ta2         121 HNGISDING--LVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR  194 (210)
T ss_dssp             TSCCCCCGG--GGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG
T ss_pred             ccccccccc--ccccccccccccccccccccc--ccccccccccccccccccccccc--ccCCCCCCEEECCCCCCCCCh
Confidence            877776653  566777888888877776543  25567778888888887777653  667778888888888777653


Q ss_pred             chhcCCCCCCCEEEccC
Q psy8550         296 DGAFNGLGRLSALDLRG  312 (332)
Q Consensus       296 ~~~~~~l~~L~~L~Ls~  312 (332)
                        .+.++++|++|+|++
T Consensus       195 --~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         195 --ALAGLKNLDVLELFS  209 (210)
T ss_dssp             --GGTTCTTCSEEEEEE
T ss_pred             --hhcCCCCCCEEEccC
Confidence              477777888887763

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.82  E-value=2.4e-19  Score=148.56  Aligned_cols=160  Identities=27%  Similarity=0.463  Sum_probs=141.3

Q ss_pred             CCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEcc
Q psy8550         136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLR  215 (332)
Q Consensus       136 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  215 (332)
                      ++++.|+++++.++.++ .+..+++|++|++++|+++.+++  ++.+++|++|++++|.+..+++  +.++++|+.|+++
T Consensus        40 ~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~l~  114 (199)
T d2omxa2          40 DQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLF  114 (199)
T ss_dssp             TTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECC
T ss_pred             cCCCEEECCCCCCCCcc-ccccCCCcCcCccccccccCccc--ccCCcccccccccccccccccc--ccccccccccccc
Confidence            57899999999999885 47889999999999999998864  8899999999999999988753  8899999999999


Q ss_pred             CCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccC
Q psy8550         216 GNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA  295 (332)
Q Consensus       216 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  295 (332)
                      +|....+++  +..+++|+.|++++|.+..++  .+..+++++.|++++|+++++++  ++++++|+.|++++|+++++.
T Consensus       115 ~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~--~l~~~~~L~~L~l~~n~l~~l~~--l~~l~~L~~L~ls~N~i~~i~  188 (199)
T d2omxa2         115 NNQITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDIS  188 (199)
T ss_dssp             SSCCCCCGG--GTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG
T ss_pred             ccccccccc--cchhhhhHHhhhhhhhhcccc--cccccccccccccccccccCCcc--ccCCCCCCEEECCCCCCCCCc
Confidence            999887765  678999999999999998763  37889999999999999998864  889999999999999999864


Q ss_pred             chhcCCCCCCCEE
Q psy8550         296 DGAFNGLGRLSAL  308 (332)
Q Consensus       296 ~~~~~~l~~L~~L  308 (332)
                        .++++++|++|
T Consensus       189 --~l~~L~~L~~L  199 (199)
T d2omxa2         189 --VLAKLTNLESL  199 (199)
T ss_dssp             --GGGGCTTCSEE
T ss_pred             --cccCCCCCCcC
Confidence              47888888876

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.81  E-value=1.3e-19  Score=151.64  Aligned_cols=162  Identities=25%  Similarity=0.364  Sum_probs=142.9

Q ss_pred             CCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEe
Q psy8550         157 FYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEEL  236 (332)
Q Consensus       157 ~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  236 (332)
                      .+.+|++|++++|.+..+.  .+..+++|++|++++|+++++.+  ++.+++|++|++++|+++.++.  +..+++|+.|
T Consensus        44 ~L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L  117 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSL  117 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEE
T ss_pred             HhcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCccc--cccCcccccccccccccccccc--cccccccccc
Confidence            4568999999999999876  47889999999999999999864  6789999999999999999874  6889999999


Q ss_pred             eccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCC
Q psy8550         237 DLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT  316 (332)
Q Consensus       237 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  316 (332)
                      ++++|.+..+.  .+.+++.++.+++++|.+++..  .+..+++|+.+++++|+++++.+  +.++++|+.|++++|+++
T Consensus       118 ~l~~~~~~~~~--~l~~l~~l~~l~~~~n~l~~~~--~~~~l~~L~~l~l~~n~l~~i~~--l~~l~~L~~L~Ls~N~i~  191 (210)
T d1h6ta2         118 SLEHNGISDIN--GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  191 (210)
T ss_dssp             ECTTSCCCCCG--GGGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             ccccccccccc--cccccccccccccccccccccc--ccccccccccccccccccccccc--ccCCCCCCEEECCCCCCC
Confidence            99999988764  3778899999999999998765  46788999999999999998764  889999999999999999


Q ss_pred             CcccccccCCCCcccC
Q psy8550         317 NMMGHSMALGDYLHWI  332 (332)
Q Consensus       317 ~l~~~~~~~l~~L~~l  332 (332)
                      +++  .++.+++|+.|
T Consensus       192 ~l~--~l~~l~~L~~L  205 (210)
T d1h6ta2         192 DLR--ALAGLKNLDVL  205 (210)
T ss_dssp             BCG--GGTTCTTCSEE
T ss_pred             CCh--hhcCCCCCCEE
Confidence            985  58888888864

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.80  E-value=9.3e-19  Score=158.72  Aligned_cols=185  Identities=28%  Similarity=0.418  Sum_probs=160.9

Q ss_pred             CCceEEecCCCccccC-CCCCCCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCc
Q psy8550         116 ETLVVTCKEANLDVIP-ITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK  194 (332)
Q Consensus       116 ~~~~~~c~~~~l~~lp-~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~  194 (332)
                      ....+.+.++.+..++ ....++++.|++++|.++.++ .+..+++|+.|++++|.++++++  +..+++|++|+++++.
T Consensus       198 ~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~  274 (384)
T d2omza2         198 NLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ  274 (384)
T ss_dssp             TCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSC
T ss_pred             ccceeeccCCccCCCCcccccCCCCEEECCCCCCCCcc-hhhcccccchhccccCccCCCCc--ccccccCCEeeccCcc
Confidence            3445677777776554 344589999999999999886 57889999999999999998763  7889999999999999


Q ss_pred             ccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCccc
Q psy8550         195 LSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPS  274 (332)
Q Consensus       195 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  274 (332)
                      ++++.+  +..+..++.+++++|.++.++.  +..+++++.|++++|.++++.+  +..+++|+.|++++|++++++  .
T Consensus       275 l~~~~~--~~~~~~l~~l~~~~n~l~~~~~--~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~l~--~  346 (384)
T d2omza2         275 ISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDVS--S  346 (384)
T ss_dssp             CCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCG--G
T ss_pred             cCCCCc--cccccccccccccccccccccc--cchhcccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCCCh--h
Confidence            998854  7789999999999999998764  5778999999999999998854  788999999999999999876  5


Q ss_pred             ccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCC
Q psy8550         275 FIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGA  313 (332)
Q Consensus       275 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  313 (332)
                      ++.+++|++|++++|++++++|  +.++++|++|++++|
T Consensus       347 l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         347 LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             GGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             HcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            8899999999999999999876  899999999999998

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=2.7e-18  Score=145.09  Aligned_cols=183  Identities=21%  Similarity=0.347  Sum_probs=158.3

Q ss_pred             CCceEEecCCCccccCCCC--CCCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCC
Q psy8550         116 ETLVVTCKEANLDVIPITL--NPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN  193 (332)
Q Consensus       116 ~~~~~~c~~~~l~~lp~~~--~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n  193 (332)
                      ....+.+.++.++.++ ++  .++|++|++++|.++.+++ +..+++++.+++++|.++.++  .+..+++|+.++++++
T Consensus        42 ~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~~~i~--~l~~l~~L~~l~l~~~  117 (227)
T d1h6ua2          42 GITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTST  117 (227)
T ss_dssp             TCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG--GGTTCTTCCEEECTTS
T ss_pred             CcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeecccc-ccccccccccccccccccccc--cccccccccccccccc
Confidence            4557888888888875 34  3899999999999998865 899999999999999998775  5788999999999999


Q ss_pred             cccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcc
Q psy8550         194 KLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTP  273 (332)
Q Consensus       194 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  273 (332)
                      ....+.+  +...+.++.+.++++.+....+  +...++|+.|++++|.+....+  ++++++|+.|++++|+++++++ 
T Consensus       118 ~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~Ls~n~l~~l~~-  190 (227)
T d1h6ua2         118 QITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP-  190 (227)
T ss_dssp             CCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-
T ss_pred             cccccch--hccccchhhhhchhhhhchhhh--hccccccccccccccccccchh--hcccccceecccCCCccCCChh-
Confidence            8887644  6678899999999998877655  5678899999999999887643  8889999999999999998864 


Q ss_pred             cccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccC
Q psy8550         274 SFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG  312 (332)
Q Consensus       274 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  312 (332)
                       ++.+++|++|++++|+++++++  ++++++|+.|++++
T Consensus       191 -l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         191 -LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN  226 (227)
T ss_dssp             -GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEE
T ss_pred             -hcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEeeC
Confidence             8889999999999999999875  88999999999974

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.79  E-value=9.9e-20  Score=150.12  Aligned_cols=178  Identities=21%  Similarity=0.257  Sum_probs=150.1

Q ss_pred             cEEEeecCCCccchhhhcCCCCCcEEEeecCcCcc-cCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCC
Q psy8550         139 QRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVN-IPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGN  217 (332)
Q Consensus       139 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n  217 (332)
                      +.++.++++++++|..+.  +++++|++++|.|+. +....|..+++|+.|++++|.+..+.+..|..+++|++|+|++|
T Consensus        11 ~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            578899999999998653  689999999999975 66778899999999999999999999999999999999999999


Q ss_pred             CCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCch
Q psy8550         218 FLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADG  297 (332)
Q Consensus       218 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  297 (332)
                      +++.+++++|.++++|++|+|++|.++.+++..|..+++|+++++++|.+.......+ ....++.+.+..+.++...|.
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~-~~~~l~~~~l~~~~~~c~~p~  167 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAPS  167 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSST
T ss_pred             cccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHH-HhhhhhhhcccCCCeEeCCCh
Confidence            9999999999999999999999999999999999999999999999999876543222 123456667777877765553


Q ss_pred             hcCCCCCCCEEEccCCCCCCccccc
Q psy8550         298 AFNGLGRLSALDLRGAGLTNMMGHS  322 (332)
Q Consensus       298 ~~~~l~~L~~L~Ls~n~l~~l~~~~  322 (332)
                         .+..++.+||+.|.++...++.
T Consensus       168 ---~l~~~~l~~L~~n~l~C~~~~~  189 (192)
T d1w8aa_         168 ---KVRDVQIKDLPHSEFKCSSENS  189 (192)
T ss_dssp             ---TTTTSBGGGSCTTTCCCCCC--
T ss_pred             ---hhcCCEeeecCHhhCcCCCCCC
Confidence               4456778899999998766643

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2e-18  Score=147.11  Aligned_cols=192  Identities=15%  Similarity=0.176  Sum_probs=159.3

Q ss_pred             cEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccc-cCccccCCCCCCCEEEccC-
Q psy8550         139 QRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSS-VNNKTFIGLKSLKVLNLRG-  216 (332)
Q Consensus       139 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~-  216 (332)
                      +.++.++..++.+|+.+.  +++++|++++|.++.+++.+|.++++|++|++++|.+.. +++.+|.++++++++.+.+ 
T Consensus        11 ~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred             CEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence            467888888999997553  589999999999999998899999999999999998876 5677899999999999865 


Q ss_pred             CCCCCCCccccCCCCCCcEeeccCCCCcccChh-hcCCCCCCcEEeCCCCCCCCcCcccccCCC-CccEEEcCCCcCCcc
Q psy8550         217 NFLEDLPDRLFAPLSHLEELDLGQNRISRIDQA-CFEGLTALRILYLDDNQLRSVPTPSFIYLG-MLAELRVGLNVFTTL  294 (332)
Q Consensus       217 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~  294 (332)
                      |.+...++..|..+++|+++++++|.+...++. .+..+..+..+..+++.+..++...+..++ .+..+++++|+++.+
T Consensus        89 n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i  168 (242)
T d1xwdc1          89 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI  168 (242)
T ss_dssp             TTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred             ccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccccc
Confidence            678888888889999999999999999876542 234456666677788889988887777664 789999999999998


Q ss_pred             CchhcCCCCCCCEEEccCCCCCCcccccccCCCCcccC
Q psy8550         295 ADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHWI  332 (332)
Q Consensus       295 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~l  332 (332)
                      .+..+......+.+++++|+++.+++..|..+++|++|
T Consensus       169 ~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L  206 (242)
T d1xwdc1         169 HNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVIL  206 (242)
T ss_dssp             CTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEE
T ss_pred             ccccccchhhhccccccccccccccHHHhcCCCCCCEE
Confidence            88766554334455678889999999999999999864

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.69  E-value=1.4e-15  Score=135.57  Aligned_cols=204  Identities=20%  Similarity=0.236  Sum_probs=126.0

Q ss_pred             CCceEEecCCCccccCCCCCCCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCC------------------C
Q psy8550         116 ETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPI------------------R  177 (332)
Q Consensus       116 ~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~------------------~  177 (332)
                      .+..+.+.++.++.++ .+++.+++|++++|.+..+|. ++.+++|++|+++++.+...+.                  .
T Consensus        79 ~L~~L~l~~n~l~~l~-~lp~~L~~L~L~~n~l~~lp~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~  156 (353)
T d1jl5a_          79 SLKSLLVDNNNLKALS-DLPPLLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELP  156 (353)
T ss_dssp             TCCEEECCSSCCSCCC-SCCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCC
T ss_pred             hhhhhhhhhcccchhh-hhccccccccccccccccccc-hhhhccceeeccccccccccccccccccchhhccccccccc
Confidence            3456677777776666 355677777777777777764 4667777777777766553321                  2


Q ss_pred             CCCCCCCCcEEEcCCCcccccCc------------------cccCCCCCCCEEEccCCCCCCCCcccc------------
Q psy8550         178 GFEPQEKLVELQLNHNKLSSVNN------------------KTFIGLKSLKVLNLRGNFLEDLPDRLF------------  227 (332)
Q Consensus       178 ~~~~l~~L~~L~l~~n~l~~~~~------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~------------  227 (332)
                      .+..++.++.+++++|.......                  ..+..++.|+.+++++|....++....            
T Consensus       157 ~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~~~~~~~~~  236 (353)
T d1jl5a_         157 ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYL  236 (353)
T ss_dssp             CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCC
T ss_pred             cccccccceecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            24445666666666654433211                  123445677777777766554432110            


Q ss_pred             ----CCCCCCcEeeccCCCCcccC---h-------------hhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcC
Q psy8550         228 ----APLSHLEELDLGQNRISRID---Q-------------ACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVG  287 (332)
Q Consensus       228 ----~~l~~L~~L~L~~n~l~~~~---~-------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  287 (332)
                          .....+...++..+.+..+.   .             .....+++|++|++++|+++.+|.    .+++|+.|+++
T Consensus       237 ~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~lp~----~~~~L~~L~L~  312 (353)
T d1jl5a_         237 TDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA----LPPRLERLIAS  312 (353)
T ss_dssp             SCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCC----CCTTCCEEECC
T ss_pred             cccccccccccccccccccccccccccchhcccccccCccccccccCCCCCEEECCCCccCcccc----ccCCCCEEECC
Confidence                00112233333332222111   0             111234689999999999998875    36789999999


Q ss_pred             CCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCcc
Q psy8550         288 LNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLH  330 (332)
Q Consensus       288 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~  330 (332)
                      +|+++.++.    .+++|+.|++++|+++++|. ....++.|+
T Consensus       313 ~N~L~~l~~----~~~~L~~L~L~~N~L~~lp~-~~~~L~~L~  350 (353)
T d1jl5a_         313 FNHLAEVPE----LPQNLKQLHVEYNPLREFPD-IPESVEDLR  350 (353)
T ss_dssp             SSCCSCCCC----CCTTCCEEECCSSCCSSCCC-CCTTCCEEE
T ss_pred             CCcCCcccc----ccCCCCEEECcCCcCCCCCc-cccccCeeE
Confidence            999998764    35689999999999999875 455566554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=5e-17  Score=129.80  Aligned_cols=127  Identities=23%  Similarity=0.251  Sum_probs=71.8

Q ss_pred             CCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcE
Q psy8550         180 EPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRI  259 (332)
Q Consensus       180 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  259 (332)
                      .+..+++.|++++|+|+.+ +..+..+++|+.|++++|.++.++.  +..+++|++|++++|+++.+++..+..+++|++
T Consensus        15 ~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l~~--~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEECC--CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             cCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCccCC--cccCcchhhhhcccccccCCCcccccccccccc
Confidence            3444555555555555555 2334445555555555555555532  455566666666666666555544455566666


Q ss_pred             EeCCCCCCCCcCc-ccccCCCCccEEEcCCCcCCccCc---hhcCCCCCCCEEE
Q psy8550         260 LYLDDNQLRSVPT-PSFIYLGMLAELRVGLNVFTTLAD---GAFNGLGRLSALD  309 (332)
Q Consensus       260 L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~  309 (332)
                      |++++|.+..++. ..+..+++|+++++++|+++..+.   ..+..+++|++||
T Consensus        92 L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          92 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            6666666655543 345566666666666666655542   3455666676666

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=7.2e-17  Score=128.87  Aligned_cols=128  Identities=22%  Similarity=0.257  Sum_probs=112.2

Q ss_pred             ccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCc
Q psy8550         202 TFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGML  281 (332)
Q Consensus       202 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  281 (332)
                      .|.+..++++|+|++|+++.++. .+..+++|+.|++++|.++.++  .+..+++|++|++++|.++.+++..+..+++|
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i~~-~~~~l~~L~~L~Ls~N~i~~l~--~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             hccCcCcCcEEECCCCCCCccCc-cccccccCCEEECCCCCCCccC--CcccCcchhhhhcccccccCCCcccccccccc
Confidence            36677899999999999999975 4577899999999999999884  38899999999999999999998777889999


Q ss_pred             cEEEcCCCcCCccCc-hhcCCCCCCCEEEccCCCCCCccc---ccccCCCCcccC
Q psy8550         282 AELRVGLNVFTTLAD-GAFNGLGRLSALDLRGAGLTNMMG---HSMALGDYLHWI  332 (332)
Q Consensus       282 ~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~l~~---~~~~~l~~L~~l  332 (332)
                      +.|++++|+++.+.. ..+..+++|++|++++|.++..+.   ..++.++.|++|
T Consensus        90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~L  144 (162)
T d1a9na_          90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL  144 (162)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEE
T ss_pred             ccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCee
Confidence            999999999998765 578899999999999999988773   467888888764

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.64  E-value=1.1e-14  Score=129.55  Aligned_cols=190  Identities=22%  Similarity=0.288  Sum_probs=116.1

Q ss_pred             CceEEecCCCccccCCCCCCCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCccc
Q psy8550         117 TLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLS  196 (332)
Q Consensus       117 ~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~  196 (332)
                      ..++++.+++++.+|+ .++++++|++++|+|+++|..   ..+|++|++++|+++.++.  +  .+.|++|++++|.+.
T Consensus        40 l~~LdLs~~~L~~lp~-~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~l~~n~l~~l~~--l--p~~L~~L~L~~n~l~  111 (353)
T d1jl5a_          40 AHELELNNLGLSSLPE-LPPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSD--L--PPLLEYLGVSNNQLE  111 (353)
T ss_dssp             CSEEECTTSCCSCCCS-CCTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCS--C--CTTCCEEECCSSCCS
T ss_pred             CCEEEeCCCCCCCCCC-CCCCCCEEECCCCCCcccccc---hhhhhhhhhhhcccchhhh--h--ccccccccccccccc
Confidence            3467777777777774 456778888888877777754   3467777777777666541  1  235777777777777


Q ss_pred             ccCccccCCCCCCCEEEccCCCCCCCCcc------------------ccCCCCCCcEeeccCCCCcccCh----------
Q psy8550         197 SVNNKTFIGLKSLKVLNLRGNFLEDLPDR------------------LFAPLSHLEELDLGQNRISRIDQ----------  248 (332)
Q Consensus       197 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------------------~~~~l~~L~~L~L~~n~l~~~~~----------  248 (332)
                      .++.  ++.+++|++|+++++.+...+..                  .+..++.++.+++.+|.......          
T Consensus       112 ~lp~--~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~  189 (353)
T d1jl5a_         112 KLPE--LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVA  189 (353)
T ss_dssp             SCCC--CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEEC
T ss_pred             cccc--hhhhccceeeccccccccccccccccccchhhccccccccccccccccceeccccccccccccccccccccccc
Confidence            6632  45667777777776655433221                  12334455555555554332210          


Q ss_pred             --------hhcCCCCCCcEEeCCCCCCCCcCc------------------------------------------------
Q psy8550         249 --------ACFEGLTALRILYLDDNQLRSVPT------------------------------------------------  272 (332)
Q Consensus       249 --------~~~~~l~~L~~L~L~~n~l~~~~~------------------------------------------------  272 (332)
                              ..+..++.|+.+++++|....++.                                                
T Consensus       190 ~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~  269 (353)
T d1jl5a_         190 GNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYL  269 (353)
T ss_dssp             CSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhccc
Confidence                    112334555555555544332210                                                


Q ss_pred             --------ccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCccc
Q psy8550         273 --------PSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMG  320 (332)
Q Consensus       273 --------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~  320 (332)
                              .....+++|++|++++|+++.++.    .+++|+.|++++|+|+.++.
T Consensus       270 ~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~lp~----~~~~L~~L~L~~N~L~~l~~  321 (353)
T d1jl5a_         270 NASSNEIRSLCDLPPSLEELNVSNNKLIELPA----LPPRLERLIASFNHLAEVPE  321 (353)
T ss_dssp             ECCSSCCSEECCCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC
T ss_pred             ccccCccccccccCCCCCEEECCCCccCcccc----ccCCCCEEECCCCcCCcccc
Confidence                    011224689999999999987764    35788999999999998864

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=2.7e-16  Score=119.66  Aligned_cols=103  Identities=26%  Similarity=0.318  Sum_probs=65.3

Q ss_pred             cEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCC
Q psy8550         186 VELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDN  265 (332)
Q Consensus       186 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  265 (332)
                      ++|++++|+++.++  .+.++.+|++|++++|.++++|+. ++.+++|+.|++++|.++.++  .+..+++|++|++++|
T Consensus         1 R~L~Ls~n~l~~l~--~l~~l~~L~~L~ls~N~l~~lp~~-~~~l~~L~~L~l~~N~i~~l~--~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVD--GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSSCC--CGGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCCCc--ccccCCCCCEEECCCCccCcchhh-hhhhhcccccccccccccccC--ccccccccCeEECCCC
Confidence            45677777776653  256666777777777777666654 456666777777777666653  2566666666666666


Q ss_pred             CCCCcCc-ccccCCCCccEEEcCCCcCCc
Q psy8550         266 QLRSVPT-PSFIYLGMLAELRVGLNVFTT  293 (332)
Q Consensus       266 ~l~~~~~-~~~~~l~~L~~L~L~~n~l~~  293 (332)
                      .+++++. ..++.+++|+.+++++|+++.
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            6666553 345566666666666666654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=1.3e-15  Score=115.88  Aligned_cols=116  Identities=26%  Similarity=0.289  Sum_probs=66.2

Q ss_pred             CEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCC
Q psy8550         210 KVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLN  289 (332)
Q Consensus       210 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  289 (332)
                      +.|++++|.++.++.  +..+++|++|++++|+++.+++ .++.+++|++|++++|.+++++  .++.+++|+.+++++|
T Consensus         1 R~L~Ls~n~l~~l~~--l~~l~~L~~L~ls~N~l~~lp~-~~~~l~~L~~L~l~~N~i~~l~--~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCCCcc--cccCCCCCEEECCCCccCcchh-hhhhhhcccccccccccccccC--ccccccccCeEECCCC
Confidence            356666666665543  4556666666666666665533 3555666666666666666654  2556666666666666


Q ss_pred             cCCccCc-hhcCCCCCCCEEEccCCCCCCcc---cccccCCCCcc
Q psy8550         290 VFTTLAD-GAFNGLGRLSALDLRGAGLTNMM---GHSMALGDYLH  330 (332)
Q Consensus       290 ~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~l~---~~~~~~l~~L~  330 (332)
                      +++.++. ..++.+++|++|++++|.++..+   ...++.++.|+
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~  120 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS  120 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCS
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcc
Confidence            6665543 34555666666666666554332   33344444443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=3.5e-15  Score=118.14  Aligned_cols=115  Identities=23%  Similarity=0.258  Sum_probs=78.0

Q ss_pred             CCCCCcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchhhhcCCCCCcEEEeecC-cCcccCCCCCCCCCCC
Q psy8550         107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHN-QLVNIPIRGFEPQEKL  185 (332)
Q Consensus       107 ~p~~c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~-~l~~~~~~~~~~l~~L  185 (332)
                      ||+.|.|... ..++|.+..+.++|..+                     ..+++|++|++.++ .++.+++.+|.++++|
T Consensus         1 CP~~C~c~~~-~~l~c~~~~~~~~p~~l---------------------~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L   58 (156)
T d2ifga3           1 CPDACCPHGS-SGLRCTRDGALDSLHHL---------------------PGAENLTELYIENQQHLQHLELRDLRGLGEL   58 (156)
T ss_dssp             CCSSSCCSSS-SCEECCSSCCCTTTTTS---------------------CSCSCCSEEECCSCSSCCEECGGGSCSCCCC
T ss_pred             CcCCCCcCCC-CeEEecCCCCccCcccc---------------------cCccccCeeecCCCccccccCchhhcccccc
Confidence            8999999754 35788777766666544                     34456666666544 3666666667777777


Q ss_pred             cEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCc
Q psy8550         186 VELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRIS  244 (332)
Q Consensus       186 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  244 (332)
                      +.|++++|+++.+.+.+|.++++|++|+|++|+++.++++.|..+ +|+.|++++|.+.
T Consensus        59 ~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          59 RNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             SEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC-CCCEEECCSSCCC
T ss_pred             CcceeeccccCCcccccccccccccceeccCCCCcccChhhhccc-cccccccCCCccc
Confidence            777777777777766777777777777777777777777665543 5777777777653

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=4.7e-14  Score=111.51  Aligned_cols=107  Identities=21%  Similarity=0.176  Sum_probs=71.8

Q ss_pred             CCcEEEcCCCcccccCccccCCCCCCCEEEccCC-CCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeC
Q psy8550         184 KLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGN-FLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYL  262 (332)
Q Consensus       184 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  262 (332)
                      ..+.++.+++.+... |..+.++++|+.|++++| .++.+++..|.++++|+.|++++|+++.+++.+|..+++|++|+|
T Consensus         9 ~~~~l~c~~~~~~~~-p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDGALDS-LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSCCCTT-TTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCCCccC-cccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            344556666655554 445666667777777554 467777666777777777777777777777777777777777777


Q ss_pred             CCCCCCCcCcccccCCCCccEEEcCCCcCC
Q psy8550         263 DDNQLRSVPTPSFIYLGMLAELRVGLNVFT  292 (332)
Q Consensus       263 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  292 (332)
                      ++|+++.++...|..+ +|+.|++++|++.
T Consensus        88 s~N~l~~l~~~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          88 SFNALESLSWKTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             CSSCCSCCCSTTTCSC-CCCEEECCSSCCC
T ss_pred             cCCCCcccChhhhccc-cccccccCCCccc
Confidence            7777777776666443 5777777777775

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.1e-14  Score=125.03  Aligned_cols=178  Identities=20%  Similarity=0.215  Sum_probs=124.9

Q ss_pred             CCccEEEeecCCCc--cchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCC-cccccC-ccccCCCCCCCE
Q psy8550         136 PSIQRLVLKYNRIK--TVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN-KLSSVN-NKTFIGLKSLKV  211 (332)
Q Consensus       136 ~~L~~L~l~~~~l~--~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~  211 (332)
                      .++++|+++++.++  .+...+..+++|++|++++|.+.......++.+++|++|++++| .++... ...+.++++|++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            67899999988876  35556788899999999999877654456777889999999885 454321 112345788999


Q ss_pred             EEccCCC-CCC--CCccccCCCCCCcEeeccCCC--CcccC-hhhcCCCCCCcEEeCCCC-CCCCcCcccccCCCCccEE
Q psy8550         212 LNLRGNF-LED--LPDRLFAPLSHLEELDLGQNR--ISRID-QACFEGLTALRILYLDDN-QLRSVPTPSFIYLGMLAEL  284 (332)
Q Consensus       212 L~L~~n~-l~~--~~~~~~~~l~~L~~L~L~~n~--l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L  284 (332)
                      |+++++. ++.  +........++|+.|+++++.  ++... ...+.++++|++|++++| .+++.....++.+++|++|
T Consensus       126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L  205 (284)
T d2astb2         126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL  205 (284)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             cccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEE
Confidence            9998863 432  111111234678899988752  33221 223356788999999886 4665555567788899999


Q ss_pred             EcCCC-cCCccCchhcCCCCCCCEEEccCC
Q psy8550         285 RVGLN-VFTTLADGAFNGLGRLSALDLRGA  313 (332)
Q Consensus       285 ~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n  313 (332)
                      ++++| .+++.....++++++|+.|+++++
T Consensus       206 ~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         206 SLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             ECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            99985 676655556788889999999887

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.45  E-value=2.2e-16  Score=130.25  Aligned_cols=126  Identities=22%  Similarity=0.284  Sum_probs=74.3

Q ss_pred             ccEEEeecC--CCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEcc
Q psy8550         138 IQRLVLKYN--RIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLR  215 (332)
Q Consensus       138 L~~L~l~~~--~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  215 (332)
                      .+.+++.+.  .+..++.++..+++|++|++++|.|+.++  .+..+++|++|++++|.++.++ ..+..+++|++|+++
T Consensus        25 ~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~--~l~~l~~L~~L~Ls~N~i~~i~-~~~~~~~~L~~L~l~  101 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIE-NLDAVADTLEELWIS  101 (198)
T ss_dssp             CSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCC--CHHHHTTCCEEECCEEEECSCS-SHHHHHHHCCEEECS
T ss_pred             cceeeeecccCchhhhhhHHhcccccceeECcccCCCCcc--cccCCccccChhhccccccccc-ccccccccccccccc
Confidence            344455443  35667777777888888888888777764  3666777777777777776653 222333456666666


Q ss_pred             CCCCCCCCccccCCCCCCcEeeccCCCCcccCh-hhcCCCCCCcEEeCCCCCCC
Q psy8550         216 GNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQ-ACFEGLTALRILYLDDNQLR  268 (332)
Q Consensus       216 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~  268 (332)
                      +|.++.+++  +..+++|+.|++++|+++.+.. ..+..+++|+.|++++|.+.
T Consensus       102 ~N~i~~l~~--~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         102 YNQIASLSG--IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             EEECCCHHH--HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             ccccccccc--ccccccccccccccchhccccccccccCCCccceeecCCCccc
Confidence            666655432  3445555566666555555432 33455555555555555444

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.41  E-value=4.3e-16  Score=128.48  Aligned_cols=145  Identities=22%  Similarity=0.345  Sum_probs=110.7

Q ss_pred             CCCcEEEeecC--cCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEe
Q psy8550         159 SSLQHVDLSHN--QLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEEL  236 (332)
Q Consensus       159 ~~L~~L~l~~~--~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  236 (332)
                      ..++.+++.+.  .+..++ .++..+++|++|++++|+|+.++  .+.++++|++|++++|.++.++.. +..+++|+.|
T Consensus        23 ~~~~~~~l~~~~~~i~~l~-~sl~~L~~L~~L~Ls~n~I~~i~--~l~~l~~L~~L~Ls~N~i~~i~~~-~~~~~~L~~L   98 (198)
T d1m9la_          23 TEAEKVELHGMIPPIEKMD-ATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIENL-DAVADTLEEL   98 (198)
T ss_dssp             TTCSCEECCBCCTTCCCCH-HHHHHTTTCCEEECSEEEESCCC--CHHHHTTCCEEECCEEEECSCSSH-HHHHHHCCEE
T ss_pred             cccceeeeecccCchhhhh-hHHhcccccceeECcccCCCCcc--cccCCccccChhhccccccccccc-cccccccccc
Confidence            34556666553  233333 45777899999999999998874  478889999999999999888753 2445679999


Q ss_pred             eccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCc-ccccCCCCccEEEcCCCcCCccCch----------hcCCCCCC
Q psy8550         237 DLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPT-PSFIYLGMLAELRVGLNVFTTLADG----------AFNGLGRL  305 (332)
Q Consensus       237 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~----------~~~~l~~L  305 (332)
                      ++++|.++.+.  .+..+++|+.|++++|+++.++. ..++.+++|+.|++++|++....+.          .+..+++|
T Consensus        99 ~l~~N~i~~l~--~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L  176 (198)
T d1m9la_          99 WISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNL  176 (198)
T ss_dssp             ECSEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSC
T ss_pred             ccccccccccc--cccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCc
Confidence            99999998773  36678889999999999988764 4578889999999999988765432          15568888


Q ss_pred             CEEE
Q psy8550         306 SALD  309 (332)
Q Consensus       306 ~~L~  309 (332)
                      +.||
T Consensus       177 ~~LD  180 (198)
T d1m9la_         177 KKLD  180 (198)
T ss_dssp             CEES
T ss_pred             CEeC
Confidence            8887

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.35  E-value=6.9e-14  Score=124.84  Aligned_cols=246  Identities=15%  Similarity=0.094  Sum_probs=166.2

Q ss_pred             hhhhccchhhhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCcccCCCceEEecCCCccccCCC
Q psy8550          54 KSLLIIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKEANLDVIPIT  133 (332)
Q Consensus        54 ~~l~~iP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~c~c~~~~~~~~c~~~~l~~lp~~  133 (332)
                      +.+..+...+.+...|+.+.+++|.+.......+.                    ..+........+...+.........
T Consensus        18 e~~~~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~--------------------~~l~~~~~L~~l~l~~~~~~~~~~~   77 (344)
T d2ca6a1          18 EDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLS--------------------ENIASKKDLEIAEFSDIFTGRVKDE   77 (344)
T ss_dssp             HHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHH--------------------HTTTTCTTCCEEECCSCCTTSCGGG
T ss_pred             HHHHHHHHHHhhCCCCCEEECcCCcCCHHHHHHHH--------------------HHHHhCCCCCEEECCCCcccccccc
Confidence            45667778888888999999998876554321110                    0012223334455544332222111


Q ss_pred             -------------CCCCccEEEeecCCCcc-----chhhhcCCCCCcEEEeecCcCcccCCC-------------CCCCC
Q psy8550         134 -------------LNPSIQRLVLKYNRIKT-----VDSAIQFYSSLQHVDLSHNQLVNIPIR-------------GFEPQ  182 (332)
Q Consensus       134 -------------~~~~L~~L~l~~~~l~~-----l~~~~~~l~~L~~L~l~~~~l~~~~~~-------------~~~~l  182 (332)
                                   -.++++.|++++|.+..     +...+...++|++|++++|.+......             .....
T Consensus        78 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~  157 (344)
T d2ca6a1          78 IPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNA  157 (344)
T ss_dssp             SHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             cchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccC
Confidence                         12689999999998874     455667789999999999987531100             11345


Q ss_pred             CCCcEEEcCCCcccccC----ccccCCCCCCCEEEccCCCCCCC-----CccccCCCCCCcEeeccCCCCcccC----hh
Q psy8550         183 EKLVELQLNHNKLSSVN----NKTFIGLKSLKVLNLRGNFLEDL-----PDRLFAPLSHLEELDLGQNRISRID----QA  249 (332)
Q Consensus       183 ~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~----~~  249 (332)
                      +.|+.+.+++|.+....    ...+...++|+.|++++|.+...     ....+...++|+.|++++|.++...    ..
T Consensus       158 ~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~  237 (344)
T d2ca6a1         158 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  237 (344)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             cccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccc
Confidence            78999999999876432    23345678999999999998742     1233567789999999999986532    24


Q ss_pred             hcCCCCCCcEEeCCCCCCCCcCcccc----c--CCCCccEEEcCCCcCCccC----chhc-CCCCCCCEEEccCCCCCCc
Q psy8550         250 CFEGLTALRILYLDDNQLRSVPTPSF----I--YLGMLAELRVGLNVFTTLA----DGAF-NGLGRLSALDLRGAGLTNM  318 (332)
Q Consensus       250 ~~~~l~~L~~L~L~~n~l~~~~~~~~----~--~l~~L~~L~L~~n~l~~~~----~~~~-~~l~~L~~L~Ls~n~l~~l  318 (332)
                      .+..+++|++|++++|.+++.....+    .  ....|+.|++++|.++...    ...+ .+.+.|+.|++++|++..-
T Consensus       238 ~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         238 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             cccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCc
Confidence            56778999999999999986433222    2  2367999999999987532    2233 2578899999999999754


Q ss_pred             c
Q psy8550         319 M  319 (332)
Q Consensus       319 ~  319 (332)
                      .
T Consensus       318 ~  318 (344)
T d2ca6a1         318 D  318 (344)
T ss_dssp             S
T ss_pred             c
Confidence            3

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=2.5e-13  Score=118.07  Aligned_cols=177  Identities=20%  Similarity=0.136  Sum_probs=129.1

Q ss_pred             cCCCCCcEEEeecCcCcccC-CCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCC-CCCCCC-ccccCCCCC
Q psy8550         156 QFYSSLQHVDLSHNQLVNIP-IRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGN-FLEDLP-DRLFAPLSH  232 (332)
Q Consensus       156 ~~l~~L~~L~l~~~~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~  232 (332)
                      ....+|++|++++|.+.... ...+..+++|++|++++|.+....+..++.+++|++|+++++ .++... ......+++
T Consensus        43 ~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~  122 (284)
T d2astb2          43 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR  122 (284)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred             ccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHh
Confidence            44568999999999876422 234678899999999999988777778889999999999996 454321 122356789


Q ss_pred             CcEeeccCC-CCcccC-hhhcC-CCCCCcEEeCCCC--CCCCcC-cccccCCCCccEEEcCCC-cCCccCchhcCCCCCC
Q psy8550         233 LEELDLGQN-RISRID-QACFE-GLTALRILYLDDN--QLRSVP-TPSFIYLGMLAELRVGLN-VFTTLADGAFNGLGRL  305 (332)
Q Consensus       233 L~~L~L~~n-~l~~~~-~~~~~-~l~~L~~L~L~~n--~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L  305 (332)
                      |++|++++| .++... ...+. ..+.|+.|+++++  .++... ......+++|++|++++| .+++.....+.++++|
T Consensus       123 L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L  202 (284)
T d2astb2         123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL  202 (284)
T ss_dssp             CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             ccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcC
Confidence            999999986 344221 12222 3478999999975  344321 112356899999999997 5776666678899999


Q ss_pred             CEEEccCC-CCCCcccccccCCCCcccC
Q psy8550         306 SALDLRGA-GLTNMMGHSMALGDYLHWI  332 (332)
Q Consensus       306 ~~L~Ls~n-~l~~l~~~~~~~l~~L~~l  332 (332)
                      ++|++++| .++.-....++.++.|+.|
T Consensus       203 ~~L~L~~C~~i~~~~l~~L~~~~~L~~L  230 (284)
T d2astb2         203 QHLSLSRCYDIIPETLLELGEIPTLKTL  230 (284)
T ss_dssp             CEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             CEEECCCCCCCChHHHHHHhcCCCCCEE
Confidence            99999996 6776666677788888753

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.08  E-value=2.4e-11  Score=108.05  Aligned_cols=202  Identities=16%  Similarity=0.109  Sum_probs=134.5

Q ss_pred             CCceEEecCCCccc-----cCCCC--CCCccEEEeecCCCcc-----------chhhhcCCCCCcEEEeecCcCcccCC-
Q psy8550         116 ETLVVTCKEANLDV-----IPITL--NPSIQRLVLKYNRIKT-----------VDSAIQFYSSLQHVDLSHNQLVNIPI-  176 (332)
Q Consensus       116 ~~~~~~c~~~~l~~-----lp~~~--~~~L~~L~l~~~~l~~-----------l~~~~~~l~~L~~L~l~~~~l~~~~~-  176 (332)
                      ....++..++.+..     +-..+  .++++.++++++....           +...+...++|++|++++|.+..... 
T Consensus        32 ~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~  111 (344)
T d2ca6a1          32 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE  111 (344)
T ss_dssp             CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHH
T ss_pred             CCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccccccc
Confidence            34467777665432     22122  2788899888765432           22345667889999999988765322 


Q ss_pred             ---CCCCCCCCCcEEEcCCCcccccCccc-------------cCCCCCCCEEEccCCCCCCCCc----cccCCCCCCcEe
Q psy8550         177 ---RGFEPQEKLVELQLNHNKLSSVNNKT-------------FIGLKSLKVLNLRGNFLEDLPD----RLFAPLSHLEEL  236 (332)
Q Consensus       177 ---~~~~~l~~L~~L~l~~n~l~~~~~~~-------------~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L  236 (332)
                         ..+...++|+.|++++|.+.......             ....+.|+.+++++|.++....    ..+...+.++.|
T Consensus       112 ~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L  191 (344)
T d2ca6a1         112 PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV  191 (344)
T ss_dssp             HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEE
T ss_pred             chhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhccc
Confidence               22345688999999988764321111             1345688899999888763321    123456789999


Q ss_pred             eccCCCCccc-----ChhhcCCCCCCcEEeCCCCCCCCcC----cccccCCCCccEEEcCCCcCCccCc----hhcCC--
Q psy8550         237 DLGQNRISRI-----DQACFEGLTALRILYLDDNQLRSVP----TPSFIYLGMLAELRVGLNVFTTLAD----GAFNG--  301 (332)
Q Consensus       237 ~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~--  301 (332)
                      ++++|.+...     ....+..+++|+.|++++|.++...    ...+..+++|++|++++|.+++...    ..+..  
T Consensus       192 ~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~  271 (344)
T d2ca6a1         192 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLE  271 (344)
T ss_dssp             ECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCS
T ss_pred             ccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhcc
Confidence            9999988742     1234667789999999999886432    2345678899999999999986432    23332  


Q ss_pred             CCCCCEEEccCCCCCC
Q psy8550         302 LGRLSALDLRGAGLTN  317 (332)
Q Consensus       302 l~~L~~L~Ls~n~l~~  317 (332)
                      ...|++||+++|.++.
T Consensus       272 ~~~L~~L~ls~N~i~~  287 (344)
T d2ca6a1         272 NIGLQTLRLQYNEIEL  287 (344)
T ss_dssp             SCCCCEEECCSSCCBH
T ss_pred             CCCCCEEECCCCcCCh
Confidence            3679999999998764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=8.6e-10  Score=100.51  Aligned_cols=185  Identities=19%  Similarity=0.169  Sum_probs=104.0

Q ss_pred             CCccEEEeecCCCcc------chhhhcCCCCCcEEEeecCcCcccCC----CCCCCCCCCcEEEcCCCcccccCccc---
Q psy8550         136 PSIQRLVLKYNRIKT------VDSAIQFYSSLQHVDLSHNQLVNIPI----RGFEPQEKLVELQLNHNKLSSVNNKT---  202 (332)
Q Consensus       136 ~~L~~L~l~~~~l~~------l~~~~~~l~~L~~L~l~~~~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~---  202 (332)
                      +.++.+++.++.+..      +.........++.+++++|.+.....    ..+...+.++.+++++|.+.......   
T Consensus       226 ~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~  305 (460)
T d1z7xw1         226 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE  305 (460)
T ss_dssp             TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred             ccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhc
Confidence            456666666665431      12233445667777777776553221    12234566777777777665321111   


Q ss_pred             --cCCCCCCCEEEccCCCCCCCCcc----ccCCCCCCcEeeccCCCCcccC----hhhc-CCCCCCcEEeCCCCCCCCcC
Q psy8550         203 --FIGLKSLKVLNLRGNFLEDLPDR----LFAPLSHLEELDLGQNRISRID----QACF-EGLTALRILYLDDNQLRSVP  271 (332)
Q Consensus       203 --~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~----~~~~-~~l~~L~~L~L~~n~l~~~~  271 (332)
                        ......|+.+++++|.++.....    .+....+|++|++++|.++...    ...+ ...+.|++|++++|.+++..
T Consensus       306 ~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~  385 (460)
T d1z7xw1         306 TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSS  385 (460)
T ss_dssp             HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH
T ss_pred             cccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHH
Confidence              12335677777777776643322    1233456788888887775421    1222 23556778888888776532


Q ss_pred             ----cccccCCCCccEEEcCCCcCCccCc----hhcC-CCCCCCEEEccCCCCCCccc
Q psy8550         272 ----TPSFIYLGMLAELRVGLNVFTTLAD----GAFN-GLGRLSALDLRGAGLTNMMG  320 (332)
Q Consensus       272 ----~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~-~l~~L~~L~Ls~n~l~~l~~  320 (332)
                          ...+...++|++|++++|+++....    .++. +...|+.|++++|.+.....
T Consensus       386 ~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~  443 (460)
T d1z7xw1         386 CSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEME  443 (460)
T ss_dssp             HHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHH
T ss_pred             HHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHH
Confidence                1234456778888888887764322    2232 33467788888877764333

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=1.5e-09  Score=85.59  Aligned_cols=64  Identities=30%  Similarity=0.355  Sum_probs=27.5

Q ss_pred             CCCCcEeeccCCCCcccCh--hhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCc
Q psy8550         230 LSHLEELDLGQNRISRIDQ--ACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTT  293 (332)
Q Consensus       230 l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  293 (332)
                      +++|++|++++|+++.+.+  ..+..+++|+.|++++|.++.+++..+.....|+.+++++|++..
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            3344444444444443321  223334444455555555444443222233344555555555543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=3.2e-09  Score=96.63  Aligned_cols=173  Identities=21%  Similarity=0.148  Sum_probs=121.6

Q ss_pred             CCccEEEeecCCCccc-----hhhhcCCCCCcEEEeecCcCcccCCC-----CCCCCCCCcEEEcCCCcccccCcc----
Q psy8550         136 PSIQRLVLKYNRIKTV-----DSAIQFYSSLQHVDLSHNQLVNIPIR-----GFEPQEKLVELQLNHNKLSSVNNK----  201 (332)
Q Consensus       136 ~~L~~L~l~~~~l~~l-----~~~~~~l~~L~~L~l~~~~l~~~~~~-----~~~~l~~L~~L~l~~n~l~~~~~~----  201 (332)
                      ..++.+++++|.+...     ...+...+.++.+++++|.+......     .......|+.+++++|.++.....    
T Consensus       255 ~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~  334 (460)
T d1z7xw1         255 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS  334 (460)
T ss_dssp             CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhccc
Confidence            6899999999988732     23566789999999999988642111     123356899999999988765433    


Q ss_pred             ccCCCCCCCEEEccCCCCCC-----CCccccCCCCCCcEeeccCCCCcccC----hhhcCCCCCCcEEeCCCCCCCCcCc
Q psy8550         202 TFIGLKSLKVLNLRGNFLED-----LPDRLFAPLSHLEELDLGQNRISRID----QACFEGLTALRILYLDDNQLRSVPT  272 (332)
Q Consensus       202 ~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~  272 (332)
                      .+...++|++|+|++|.++.     +..........|++|++++|.++...    ...+..+++|++|++++|.++....
T Consensus       335 ~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~  414 (460)
T d1z7xw1         335 VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI  414 (460)
T ss_dssp             HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHH
T ss_pred             ccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHH
Confidence            23456789999999999864     22332235678999999999997532    2445667899999999999985332


Q ss_pred             ccc----c-CCCCccEEEcCCCcCCccCchhc----CCCCCCCEE
Q psy8550         273 PSF----I-YLGMLAELRVGLNVFTTLADGAF----NGLGRLSAL  308 (332)
Q Consensus       273 ~~~----~-~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L  308 (332)
                      ..+    . ..+.|+.|++.+|.+.......+    ...++|++|
T Consensus       415 ~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l~~~  459 (460)
T d1z7xw1         415 LQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI  459 (460)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred             HHHHHHHHhCCCccCEEECCCCCCCHHHHHHHHHHHHhCCCCEEe
Confidence            222    2 34579999999999986544333    344566554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=5e-09  Score=82.48  Aligned_cols=101  Identities=16%  Similarity=0.022  Sum_probs=73.3

Q ss_pred             CCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCc--ccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEE
Q psy8550         231 SHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPT--PSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSAL  308 (332)
Q Consensus       231 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  308 (332)
                      ..+..+....+....+ ...+..++.|++|++++|+++.+.+  ..+..+++|+.|++++|.++.+.+..+.+...|+.|
T Consensus        42 ~~~~~l~~~~~~~~~l-~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L  120 (162)
T d1koha1          42 NIDVVLNRRSSMAATL-RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEEL  120 (162)
T ss_dssp             TCCCCTTSHHHHHHHH-HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSC
T ss_pred             cchhhcchhhhHhhhh-HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhcccccee
Confidence            3344444444433333 3344568899999999999998764  346678999999999999999887545455689999


Q ss_pred             EccCCCCCCccc-------ccccCCCCcccC
Q psy8550         309 DLRGAGLTNMMG-------HSMALGDYLHWI  332 (332)
Q Consensus       309 ~Ls~n~l~~l~~-------~~~~~l~~L~~l  332 (332)
                      ++++|.+.....       ..++.++.|+.|
T Consensus       121 ~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~L  151 (162)
T d1koha1         121 WLDGNSLSDTFRDQSTYISAIRERFPKLLRL  151 (162)
T ss_dssp             CCTTSTTSSSSSSHHHHHHHHHTTSTTCCEE
T ss_pred             ecCCCCcCcCcccchhHHHHHHHHCCCCCEE
Confidence            999999987654       336677777653

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.53  E-value=2.3e-05  Score=61.06  Aligned_cols=60  Identities=18%  Similarity=0.118  Sum_probs=28.9

Q ss_pred             CCCCcEEeCCCCCCCCcCc----ccccCCCCccEEEcCCCcCCcc-------CchhcCCCCCCCEEEccCC
Q psy8550         254 LTALRILYLDDNQLRSVPT----PSFIYLGMLAELRVGLNVFTTL-------ADGAFNGLGRLSALDLRGA  313 (332)
Q Consensus       254 l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~-------~~~~~~~l~~L~~L~Ls~n  313 (332)
                      .+.|++|++++|.+++...    ..+...++|++|++++|.+..+       ....+...++|+.|+++.+
T Consensus        71 n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          71 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             cccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            3455555555555543211    1233345566666665544432       1223444566666666554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.43  E-value=6.9e-05  Score=58.24  Aligned_cols=88  Identities=10%  Similarity=0.032  Sum_probs=46.3

Q ss_pred             cCCCCCCCEEEccCCCCCCCC----ccccCCCCCCcEeeccCCCCcccC----hhhcCCCCCCcEEeCCCCCCCCcCc--
Q psy8550         203 FIGLKSLKVLNLRGNFLEDLP----DRLFAPLSHLEELDLGQNRISRID----QACFEGLTALRILYLDDNQLRSVPT--  272 (332)
Q Consensus       203 ~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~--  272 (332)
                      +...++|++|++++|.+..-.    ...+...+.|+.|++++|.+....    ...+...++|++|++++|.+..+..  
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~  119 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV  119 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHH
Confidence            334445555555555544211    112233456666777766665321    1345556677777777766554331  


Q ss_pred             -----ccccCCCCccEEEcCCCc
Q psy8550         273 -----PSFIYLGMLAELRVGLNV  290 (332)
Q Consensus       273 -----~~~~~l~~L~~L~L~~n~  290 (332)
                           ..+..-++|+.|+++.+.
T Consensus       120 ~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_         120 EMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHHhCCCccEeeCcCCC
Confidence                 223344677777776653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.80  E-value=0.0002  Score=55.35  Aligned_cols=87  Identities=10%  Similarity=0.048  Sum_probs=44.3

Q ss_pred             CCCCCCcEeeccCCCCcccCh----hhcCCCCCCcEEeCCCCCCCCcCc----ccccCCCCccEEEcC--CCcCCcc---
Q psy8550         228 APLSHLEELDLGQNRISRIDQ----ACFEGLTALRILYLDDNQLRSVPT----PSFIYLGMLAELRVG--LNVFTTL---  294 (332)
Q Consensus       228 ~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~--~n~l~~~---  294 (332)
                      ...++|++|++++|.+.....    ..+...+.++.+++++|.+.....    ..+...++|+.++++  +|.+...   
T Consensus        43 ~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~  122 (166)
T d1io0a_          43 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM  122 (166)
T ss_dssp             TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred             hcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHH
Confidence            344555555555555442211    223344566666666666543211    234445666654443  4555431   


Q ss_pred             -CchhcCCCCCCCEEEccCCC
Q psy8550         295 -ADGAFNGLGRLSALDLRGAG  314 (332)
Q Consensus       295 -~~~~~~~l~~L~~L~Ls~n~  314 (332)
                       ....+...+.|+.|+++.+.
T Consensus       123 ~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_         123 EIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHhCCCcCEEeCcCCC
Confidence             22345566777777776654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.21  E-value=0.0007  Score=52.08  Aligned_cols=61  Identities=16%  Similarity=0.102  Sum_probs=28.4

Q ss_pred             CCCCcEeeccCCCCcccC----hhhcCCCCCCcEEeC--CCCCCCCcC----cccccCCCCccEEEcCCCc
Q psy8550         230 LSHLEELDLGQNRISRID----QACFEGLTALRILYL--DDNQLRSVP----TPSFIYLGMLAELRVGLNV  290 (332)
Q Consensus       230 l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L--~~n~l~~~~----~~~~~~l~~L~~L~L~~n~  290 (332)
                      ...++.+++++|.+..-.    ...+...++|+.++|  ++|.+....    ...+...+.|+.|+++.+.
T Consensus        73 ~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          73 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             cccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            345555555555544221    123344455655443  344444311    1233345666777666553