Psyllid ID: psy8556

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------30
Protein Sequence
MRDVKDVLDRDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTKFNIDINKYGISFLYDKLKLLDPVTANQPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQKILNLIKDIF
Secondary Structure (PSIPRED)
cccHHHHHHccccccHHHHHHHHHHcccccccccccccEEEEEcccccHHHHHHHHHHHHccccEEEcHHHHHHcccccccccccHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHcccccEEEcccHHHHHHHHccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccEEEccccccHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccHHHHHccccccccccccccccHHcccccHHcccccEEEEEccccccHHHHHHHHHHHcccEEEEEccEEEEcccccccccccHHHHHcccccEEEcccccccccHHHHHHHHHHHHHHHHHcccccEEEcHHHHHHHHHHccccccccccHHHHHHHHHHHHHccHHHHHHHHHHccHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccHHHHHHcHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccccHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MRDVKDVldrdtetdpqqrQLTADFRRIRTgkllfrktkvailgptasgkssvalkiseyipceiisidsalvycdmdigtnkpsiiereitphhlidiieptksysvIQFCEDALFSIKNIlkkkklpllvggTMLYFKALRDginklppanlklrtkfnidINKYGISFLydklklldpvtanqpsnrhiLHKRISDRFKKMLDQDLLINEVKKIRKKWNlnlnlpsmkcigyrQTWEYIDglidrntlkeKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQKILNLIKDIF
Flexible Loop (DISEMBL)
mrdvkdvldrdtetdpqqrqltadfrrirtgkllfrktkvailgptasgkssvaLKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQFCEDALFSIKNilkkkklpllVGGTMLYFKALRDGINklppanlklrtkfnIDINKYGISFLYDKLKLLDPvtanqpsnrhilhkRISDRFKKMLDQDLLINEVKKIRKkwnlnlnlpsmkciGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEkitidclekncVQKILNLIKDIF
Low Complexity Region (SEG)
MRDVKDVLDRDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQFCEDALFSIKNIlkkkklpllVGGTMLYFKALRDGINKLPPANLKLRTKFNIDINKYGISFLYDKLKLLDPVTANQPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQKILNLIKDIF
Disordered region (IsUnstruct)
**********************ADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTKFNIDINKYGISFLYDKLKLLDPVTANQPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQKILNLIKD**
Disordered Region (DISOPRED)
****KDV*******************************KVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTKFNIDINKYGISFLYDKLKLLDPVTANQPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQKILNLIKDIF
Disordered Region (DISEMBL)
*****************QRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTKFNIDINKYGISFLYDKLKLLDPVTANQPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQKILNLIKDIF
Disordered Region (DISPRO)
**********************************FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTKFNIDINKYGISFLYDKLKLLDPVTANQPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQKILNLIKDIF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRDVKDVLDRDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTKFNIDINKYGISFLYDKLKLLDPVTANQPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQKILNLIKDIF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	298	2.2.26 [Sep-21-2011]
A6SV54	314	tRNA dimethylallyltransfe	yes	N/A	0.859	0.815	0.451	8e-74
A4G288	320	tRNA dimethylallyltransfe	yes	N/A	0.855	0.796	0.453	1e-71
Q145C5	315	tRNA dimethylallyltransfe	yes	N/A	0.859	0.812	0.413	9e-68
Q8XWB0	323	tRNA dimethylallyltransfe	yes	N/A	0.869	0.801	0.414	1e-67
B2UBL0	325	tRNA dimethylallyltransfe	yes	N/A	0.859	0.787	0.418	2e-66
A4JBT2	324	tRNA dimethylallyltransfe	yes	N/A	0.892	0.820	0.414	3e-66
B2T068	315	tRNA dimethylallyltransfe	yes	N/A	0.859	0.812	0.413	6e-66
Q0BI05	324	tRNA dimethylallyltransfe	yes	N/A	0.872	0.802	0.407	4e-65
B1YTV7	324	tRNA dimethylallyltransfe	yes	N/A	0.879	0.808	0.407	5e-65
A8H8G7	296	tRNA dimethylallyltransfe	yes	N/A	0.832	0.837	0.419	6e-65

>sp|A6SV54|MIAA_JANMA tRNA dimethylallyltransferase OS=Janthinobacterium sp. (strain Marseille) GN=miaA PE=3 SV=1

 Score =  277 bits (708), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 136/301 (45%), Positives = 183/301 (60%), Gaps = 45/301 (14%)

Query: 40  VAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDI 99
           V+I+GPTASGK++ AL ++E IP EIIS+DSALVY +MDIGT KPS  E    PHHLIDI
Sbjct: 8   VSIMGPTASGKTAAALAVAEKIPAEIISVDSALVYREMDIGTAKPSAEELAQVPHHLIDI 67

Query: 100 IEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTK 159
           ++P  SYSV+QF +DA+     I  + KLPLLVGGTMLYFK L+DG++ LP A+  LR +
Sbjct: 68  LDPLDSYSVMQFRQDAIRLAAEISARGKLPLLVGGTMLYFKGLKDGLDALPQADAALRAE 127

Query: 160 FNIDINKYGISFLYDKLKLLDPVTAN---------------------------------- 185
            + +    G   ++ KL  LDP+TA                                   
Sbjct: 128 LDAEAAAIGYPAMHAKLAALDPITAERLKPNDSQRIQRALEIIALTGQPMSALLAQAPKT 187

Query: 186 -----------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCIG 234
                      +PS+R +LH RI+ RF  ML    L++EVK +R + +L+L LPSM+C+G
Sbjct: 188 ELPFTLLPIALEPSDRSVLHTRIATRFDAMLKGGALLDEVKALRARGDLHLGLPSMRCVG 247

Query: 235 YRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQKILNLI 294
           YRQ+WEY+DG      L+E+ I ATRQLAK+QLTWLR+M+++  IDCL  +    IL  I
Sbjct: 248 YRQSWEYLDGAYSLAELRERGIAATRQLAKRQLTWLRSMDDRHIIDCLAPDASGAILQQI 307

Query: 295 K 295
           +
Sbjct: 308 E 308

Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A).
Janthinobacterium sp. (strain Marseille) (taxid: 375286)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 7EC: 5

>sp|A4G288|MIAA_HERAR tRNA dimethylallyltransferase OS=Herminiimonas arsenicoxydans GN=miaA PE=3 SV=1

 Score =  270 bits (689), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 136/300 (45%), Positives = 180/300 (60%), Gaps = 45/300 (15%)

Query: 40  VAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDI 99
           V+I+GPTASGK++ AL I+E IP EIIS+DSALVY +M+IGT KP+  ER   PHHLIDI
Sbjct: 13  VSIMGPTASGKTATALAIAEQIPSEIISVDSALVYREMNIGTAKPTDEERASVPHHLIDI 72

Query: 100 IEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTK 159
           ++P  +YSV+QF +DAL  +  I  + KL LLVGGTMLYFK L+DG++ LP A+  LR +
Sbjct: 73  LDPLDAYSVMQFRQDALRLVAEISARGKLALLVGGTMLYFKGLKDGLDALPQADAALRAE 132

Query: 160 FNIDINKYGISFLYDKLKLLDPVTAN---------------------------------- 185
            + +    G   ++ KL  LDP+TA                                   
Sbjct: 133 LDAEAALIGSPAMHAKLAKLDPITAARLKPNDTQRIQRALEIITLTGQPMSALLAQAPKS 192

Query: 186 -----------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCIG 234
                      +PS R +LH RI+ RF  ML    L++EV+ +R + +L+  LPSM+C+G
Sbjct: 193 ELPFTLLPIALEPSERSVLHARIATRFDAMLKDGGLLDEVRALRARGDLHPGLPSMRCVG 252

Query: 235 YRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQKILNLI 294
           YRQ+WEY+DG      L+EK I ATRQLAK+QLTWLR M E+ TIDCL  +    IL  I
Sbjct: 253 YRQSWEYLDGAYGLAELREKGIAATRQLAKRQLTWLRGMPERQTIDCLAPDVAGSILRKI 312

Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A).

Herminiimonas arsenicoxydans (taxid: 204773)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 5

>sp|Q145C5|MIAA_BURXL tRNA dimethylallyltransferase OS=Burkholderia xenovorans (strain LB400) GN=miaA PE=3 SV=1

 Score =  257 bits (656), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 126/305 (41%), Positives = 180/305 (59%), Gaps = 49/305 (16%)

Query: 42  ILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIE 101
           +LGPTASGK++ AL ++   P EIIS+DSALVY +MDIGT KP+  ER + PHHLIDI++
Sbjct: 12  LLGPTASGKTAAALALAARHPVEIISVDSALVYREMDIGTAKPTAEERAVAPHHLIDIVD 71

Query: 102 PTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTKFN 161
           PT SYS  QF  D L     I  + +LPLLVGGTMLY+KAL  G+N LP A+  LR   +
Sbjct: 72  PTDSYSAAQFRADTLRLTGEIHARGRLPLLVGGTMLYYKALTQGLNDLPAADADLRATLD 131

Query: 162 IDINKYGISFLYDKLKLLDPVTAN------------------------------------ 185
            D  + G   ++ +L  +DPVTA                                     
Sbjct: 132 ADAAREGWPAMHARLAAVDPVTAARLAPNDSQRIQRALEVFMLTGQAMSALLAAPARVDD 191

Query: 186 ------------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCI 233
                       +PS+R +LH RI  RF  ML  +  ++EV K+R++ +L+  +PSM+C+
Sbjct: 192 AAAAWRFVPVALEPSDRGVLHARIEKRFDAML-ANGFVDEVVKLRERGDLSPEMPSMRCV 250

Query: 234 GYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQKILNL 293
           GYRQ WEY+DG +D +T+++K + ATRQL K+QLTWLR+M E++ +DC + +   ++L  
Sbjct: 251 GYRQVWEYLDGAVDYSTMRDKGVFATRQLCKRQLTWLRSMTERVVVDCCDPHATARVLEA 310

Query: 294 IKDIF 298
           I+ + 
Sbjct: 311 IEALL 315

Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A).

Burkholderia xenovorans (strain LB400) (taxid: 266265)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 5

>sp|Q8XWB0|MIAA_RALSO tRNA dimethylallyltransferase OS=Ralstonia solanacearum (strain GMI1000) GN=miaA PE=3 SV=1

 Score =  256 bits (655), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 129/311 (41%), Positives = 182/311 (58%), Gaps = 52/311 (16%)

Query: 39  KVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLID 98
            V +LGPTASGK++ AL ++E  P EIIS+DSALVY DMDIGT KPS  E+ I PHHLID
Sbjct: 11  AVCLLGPTASGKTAAALALAERWPVEIISMDSALVYRDMDIGTAKPSRAEQAIAPHHLID 70

Query: 99  IIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRT 158
           II+P  +YS  QF  DA   I+ I  + +LPL+VGGTMLY+KAL  G++ LP A+  +R 
Sbjct: 71  IIDPLDAYSAAQFATDAQALIEAIRARGRLPLIVGGTMLYYKALTQGLSDLPGADPAIRA 130

Query: 159 KFNIDINKYGISFLYDKLKLLDPVTAN--------------------------------- 185
           + + +  + G   L+ KL  +DPVTA                                  
Sbjct: 131 EIDAEAARDGWPALHAKLAQVDPVTAARLHATDAQRIQRALELYRLTGQPMSALLAREAG 190

Query: 186 ------------------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNL 227
                             +P++R +LH RI+ RF  ML   LL +EV+ +R++ +L+  L
Sbjct: 191 AAAFHRHEAAAAYLSIALEPADRAVLHARIAQRFDAMLAGGLL-DEVEALRRRGDLSPVL 249

Query: 228 PSMKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCV 287
           PS++C+GYRQ W Y+DG ID  TL+E+ I ATRQL K+Q+TWLR+  E+  +DCL  + V
Sbjct: 250 PSIRCVGYRQAWAYLDGEIDMATLREQGIAATRQLCKRQITWLRSTPERRVVDCLAPDYV 309

Query: 288 QKILNLIKDIF 298
            ++  L+++  
Sbjct: 310 DQVARLVRNAL 320

Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A).

Ralstonia solanacearum (strain GMI1000) (taxid: 267608)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 5

>sp|B2UBL0|MIAA_RALPJ tRNA dimethylallyltransferase OS=Ralstonia pickettii (strain 12J) GN=miaA PE=3 SV=1

 Score =  253 bits (645), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 129/308 (41%), Positives = 180/308 (58%), Gaps = 52/308 (16%)

Query: 39  KVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLID 98
            + +LGPTASGK++ ALK++E  P EIIS+DSALVY  MDIGT KPS  E+ I PHHLID
Sbjct: 11  AICLLGPTASGKTAAALKLAERWPVEIISMDSALVYRGMDIGTAKPSAEEQAIAPHHLID 70

Query: 99  IIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRT 158
           II+P  +YS  QF  DA   I  I  + KLPL+VGGTMLY+KAL  G++ LP A+  +R 
Sbjct: 71  IIDPLDAYSAAQFANDANALIDAIRARGKLPLIVGGTMLYYKALTQGLSDLPGADPAIRA 130

Query: 159 KFNIDINKYGISFLYDKLKLLDPVTAN--------------------------------- 185
           + + +  + G   L+ KL L+DPVTA                                  
Sbjct: 131 EIDAEAARDGWPALHAKLALVDPVTAARLHTTDAQRIQRALELYRLTGQPMSALLAREVG 190

Query: 186 ------------------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNL 227
                             +PS+R +LH RI+ RF  ML   LL +EV+ +R++ +L+  L
Sbjct: 191 ANAFQQHDAAAPYLTIALEPSDRLVLHARIAQRFDAMLAGGLL-DEVEGLRRRGDLSPTL 249

Query: 228 PSMKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCV 287
           PS++C+GYRQ W Y++G ID   L+E+ I ATRQL K+Q+TWLR+  E+  +DCL  + V
Sbjct: 250 PSIRCVGYRQAWAYLEGEIDMAALREQGIAATRQLCKRQITWLRSTPERHVVDCLAPDYV 309

Query: 288 QKILNLIK 295
            ++  L++
Sbjct: 310 DQVARLVQ 317

Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A).

Ralstonia pickettii (strain 12J) (taxid: 402626)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 5

>sp|A4JBT2|MIAA_BURVG tRNA dimethylallyltransferase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=miaA PE=3 SV=1

 Score =  251 bits (642), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 131/316 (41%), Positives = 182/316 (57%), Gaps = 50/316 (15%)

Query: 32  KLLFRKTKVA-ILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIERE 90
            L  R T +A +LGPTASGK++ AL ++   P EI+S+DSALVY DMDIGT KP+  ER 
Sbjct: 4   SLQSRPTTIACLLGPTASGKTAAALALAARRPIEIVSVDSALVYRDMDIGTAKPTRDERA 63

Query: 91  ITPHHLIDIIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLP 150
             PHHLIDII+P  SYS   F  D L  I  I  +   PLL GGTMLY+KAL  G+N LP
Sbjct: 64  RVPHHLIDIIDPADSYSAASFRADTLRLIGEIAARGNTPLLAGGTMLYYKALTQGLNDLP 123

Query: 151 PANLKLRTKFNIDINKYGISFLYDKLKLLDPVTAN------------------------- 185
            A+  LR + + D  + G   L+ +L  +DP TA                          
Sbjct: 124 GADPALRAELDADAARDGWPALHARLARIDPATAARLAPNDAQRIQRALEVCMLSGQPMS 183

Query: 186 -----------------------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWN 222
                                  +PS+R +LH RI+ RF  ML+    I+EV+++R++ +
Sbjct: 184 ALLAAPRAADDAAAAYRFVPVALEPSDRAVLHARIAQRFDAMLEAG-FIDEVERLRRRED 242

Query: 223 LNLNLPSMKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCL 282
           L+L LPSM+C+GYRQ WEY+DG ID  T+++K I ATRQL K+Q+TWLR M E+I +DC+
Sbjct: 243 LHLGLPSMRCVGYRQAWEYLDGAIDYRTMRDKGIFATRQLCKRQITWLRAMPERIVVDCI 302

Query: 283 EKNCVQKILNLIKDIF 298
            ++   + L+ ++ + 
Sbjct: 303 ARDSTAQALDALERVL 318

Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A).

Burkholderia vietnamiensis (strain G4 / LMG 22486) (taxid: 269482)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 5

>sp|B2T068|MIAA_BURPP tRNA dimethylallyltransferase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=miaA PE=3 SV=2

 Score =  251 bits (640), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 126/305 (41%), Positives = 177/305 (58%), Gaps = 49/305 (16%)

Query: 42  ILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIE 101
           +LGPTASGK++ AL ++   P EIIS+DSALVY +MDIGT KP+  ER + PHHLIDI++
Sbjct: 12  LLGPTASGKTAAALALAARRPVEIISVDSALVYREMDIGTAKPTAEERAVAPHHLIDIVD 71

Query: 102 PTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTKFN 161
           PT +YS  QF  D L     I  + +LPLLVGGTMLY+KAL  G+N LP A+ ++R   +
Sbjct: 72  PTDAYSAAQFRADTLRLTAEIHARGRLPLLVGGTMLYYKALTQGLNDLPAADAEVRATLD 131

Query: 162 IDINKYGISFLYDKLKLLDPVTAN------------------------------------ 185
            D  + G   L+ +L  LDPVTA                                     
Sbjct: 132 ADAAREGWPALHARLAALDPVTAARLAPNDSQRIQRALEVFMLTGQTMSALLAAPVMQDD 191

Query: 186 ------------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCI 233
                       +PS R +LH RI  RF  ML     I+EV K+R++ +L   + SM+C+
Sbjct: 192 SAALWRFVPIALEPSERSVLHARIEKRFDAMLAGG-FIDEVVKLRERGDLLPEMASMRCV 250

Query: 234 GYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQKILNL 293
           GYRQ WEY+DG +D +T+++K + ATRQL K+QLTWLR+M E++ +DC + +   ++L  
Sbjct: 251 GYRQVWEYLDGAVDYSTMRDKGVFATRQLCKRQLTWLRSMPERVVVDCCDPHATARVLEA 310

Query: 294 IKDIF 298
           I+ + 
Sbjct: 311 IEALL 315

Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A).

Burkholderia phytofirmans (strain DSM 17436 / PsJN) (taxid: 398527)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 5

>sp|Q0BI05|MIAA_BURCM tRNA dimethylallyltransferase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=miaA PE=3 SV=1

 Score =  248 bits (632), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 126/309 (40%), Positives = 178/309 (57%), Gaps = 49/309 (15%)

Query: 38  TKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLI 97
           T   +LGPTASGK++ AL ++   P EI+S+DSALVY DMDIGT KP+  ER   PHHLI
Sbjct: 11  TITCLLGPTASGKTAAALALAARRPIEIVSVDSALVYRDMDIGTAKPTRDERARVPHHLI 70

Query: 98  DIIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLR 157
           DII+P  +YS  +F  DAL  I  I  + + PLL GGTMLY+KAL  G+N LP A+  +R
Sbjct: 71  DIIDPADAYSAAEFRADALRLIGEIAARGRTPLLAGGTMLYYKALTQGLNDLPTADPAVR 130

Query: 158 TKFNIDINKYGISFLYDKLKLLDPVTAN-------------------------------- 185
            + + D  + G   L+ +L  +DP TA                                 
Sbjct: 131 AELDADAARDGWPALHARLAQVDPATAARLAPNDSQRIQRALEVFLLSGQPMSVLLAAPR 190

Query: 186 ----------------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPS 229
                           +PS+R +LH RI+ RF  MLD    I+EV+++R++ +L+L LPS
Sbjct: 191 RADDEAAAYRFVPVALEPSDRAVLHARIAQRFDAMLDAG-FIDEVERLRRREDLHLGLPS 249

Query: 230 MKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQK 289
           M+C+GYRQ WE++DG  D  T+++K I ATRQL K+Q+TWLR M E+I +DC+  +    
Sbjct: 250 MRCVGYRQAWEFLDGDTDYRTMRDKGIFATRQLCKRQITWLRAMPERIVVDCVAPDATAL 309

Query: 290 ILNLIKDIF 298
            L+ ++ + 
Sbjct: 310 ALDTLERVL 318

Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A).

Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) (taxid: 339670)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 5

>sp|B1YTV7|MIAA_BURA4 tRNA dimethylallyltransferase OS=Burkholderia ambifaria (strain MC40-6) GN=miaA PE=3 SV=1

 Score =  248 bits (632), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 127/312 (40%), Positives = 182/312 (58%), Gaps = 50/312 (16%)

Query: 36  RKTKVA-ILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPH 94
           R T +A +LGPTASGK++ AL ++   P EI+SIDSALVY DMDIGT KP+  ER   PH
Sbjct: 8   RPTTIACLLGPTASGKTAAALALAARRPIEIVSIDSALVYRDMDIGTAKPTRDERARVPH 67

Query: 95  HLIDIIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANL 154
           HLIDII+P  +YS  +F  DAL  I  I  + + PLL GGTMLY+KAL  G+N LP A+ 
Sbjct: 68  HLIDIIDPADAYSAAEFRADALRLIGEIAARGRTPLLAGGTMLYYKALTQGLNDLPTADP 127

Query: 155 KLRTKFNIDINKYGISFLYDKLKLLDPVTAN----------------------------- 185
            +R + + D  + G   L+ +L  +DP TA                              
Sbjct: 128 AVRAELDADAARDGWPALHARLAQVDPATAARLAPNDSQRIQRALEVFLLSGQPMSVLLA 187

Query: 186 -------------------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLN 226
                              +PS+R +LH RI+ RF  MLD    I+EV+++R++ +L+ +
Sbjct: 188 APRRADDEAAAYRFVPVALEPSDRAVLHARIAQRFDAMLDAG-FIDEVERLRRREDLHPD 246

Query: 227 LPSMKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNC 286
           LPSM+C+GYRQ WE++DG  D  T+++K I ATRQL K+Q+TWLR + E+I +DC+  + 
Sbjct: 247 LPSMRCVGYRQAWEFLDGDTDYRTMRDKGIFATRQLCKRQITWLRALPERIVVDCVAPDA 306

Query: 287 VQKILNLIKDIF 298
             + L+ ++ + 
Sbjct: 307 TARALDTLERVL 318

Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A).

Burkholderia ambifaria (strain MC40-6) (taxid: 398577)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 5

>sp|A8H8G7|MIAA_SHEPA tRNA dimethylallyltransferase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=miaA PE=3 SV=1

 Score =  248 bits (632), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 123/293 (41%), Positives = 180/293 (61%), Gaps = 45/293 (15%)

Query: 43  LGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEP 102
           +GPTASGK+++A+++ +   CEIIS+DSAL+Y DMDIGT KP   E+   PH LIDII+P
Sbjct: 1   MGPTASGKTALAIELVKQYDCEIISVDSALIYKDMDIGTAKPDAAEQAAAPHRLIDIIDP 60

Query: 103 TKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTKFNI 162
            +SYS   F  DAL  I++IL + K PLLVGGTM+YFKAL +G++ LP A+  +R +   
Sbjct: 61  AQSYSAADFRRDALAQIEDILSRGKTPLLVGGTMMYFKALLEGLSPLPGADEAIREQIAA 120

Query: 163 DINKYGISFLYDKLKLLDPVTANQ------------------------------------ 186
           +    G   L+D+L+ +DPV+A +                                    
Sbjct: 121 EAEAQGWQALHDQLREIDPVSAERIHPNDPQRLARALEVYRVSGQTLTELTKTKSDVFPY 180

Query: 187 --------PSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCIGYRQT 238
                   PS+R +LH+ I  RFK ML Q    +EV++++ + +LNL+LPSM+C+GYRQ 
Sbjct: 181 DVVQFAIAPSDRKVLHRAIETRFKAMLAQG-FTSEVERLKARTDLNLDLPSMRCVGYRQC 239

Query: 239 WEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQKIL 291
           W+Y+DG ID +T+ EK+I+ATRQLAK+QLTWLR   + I ++   +N +  ++
Sbjct: 240 WQYLDGEIDYDTMVEKAIVATRQLAKRQLTWLRGWPDLIWLESGAENNLATVM 292

Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A).

Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) (taxid: 398579)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	298
237748582	312	tRNA delta(2)-isopentenylpyrophosphate t	0.869	0.830	0.480	2e-76
409404612	318	tRNA delta2-isopentenylpyrophosphate tra	0.875	0.820	0.454	3e-74
300310167	315	tRNA delta2-isopentenylpyrophosphate tra	0.862	0.815	0.453	6e-74
399017674	319	tRNA isopentenyltransferase MiaA [Herbas	0.859	0.802	0.451	3e-73
398836370	314	tRNA isopentenyltransferase MiaA [Herbas	0.812	0.770	0.452	4e-73
395763877	315	tRNA delta(2)-isopentenylpyrophosphate t	0.872	0.825	0.465	4e-73
237745901	313	tRNA delta(2)-isopentenylpyrophosphate t	0.865	0.824	0.442	6e-73
340788754	353	tRNA delta(2)-isopentenylpyrophosphate t	0.855	0.722	0.466	3e-72
152979929	314	tRNA delta(2)-isopentenylpyrophosphate t	0.859	0.815	0.451	5e-72
329904232	320	tRNA delta(2)-isopentenylpyrophosphate t	0.862	0.803	0.460	6e-70

>gi|237748582|ref|ZP_04579062.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Oxalobacter formigenes OXCC13] gi|229379944|gb|EEO30035.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Oxalobacter formigenes OXCC13]

 Score =  291 bits (745), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 146/304 (48%), Positives = 195/304 (64%), Gaps = 45/304 (14%)

Query: 40  VAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDI 99
           +AI+GPTASGK++ AL I++ IP EIIS+DSALVY +MDIGT KPS  ER   PHHLIDI
Sbjct: 9   IAIMGPTASGKTAAALDIAQNIPSEIISVDSALVYREMDIGTAKPSQEERASVPHHLIDI 68

Query: 100 IEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTK 159
           I+P+++YSV QF ED L  I  I ++ KLPLLVGGTMLYFK L  G++ LP AN ++R K
Sbjct: 69  IDPSQTYSVAQFREDTLRLITEIRQRGKLPLLVGGTMLYFKGLTSGLDDLPGANPEIRAK 128

Query: 160 FNIDINKYGISFLYDKLKLLDPVTAN---------------------------------- 185
            + +  + G   ++ KL  LDPVTA+                                  
Sbjct: 129 LDEEAAQIGWPGMHAKLSSLDPVTADRLKPNDAQRIQRALEIIELTGKPLSELHSGQQAR 188

Query: 186 -----------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCIG 234
                      +PS+R  LH+RI+ RF +ML  DLLI EV+K+R++ +L+  +PSM+C+G
Sbjct: 189 SFPFDIIPIALEPSDRSKLHERIALRFDQMLKDDLLIEEVRKLRERGDLHPGMPSMRCVG 248

Query: 235 YRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQKILNLI 294
           YRQTWEY+DG  DR  L+EK I ATRQLAK+QLTWLR+M E+I+IDCL  N +  I+  +
Sbjct: 249 YRQTWEYLDGEFDRKALREKGIAATRQLAKRQLTWLRSMPERISIDCLSPNALSDIMTHV 308

Query: 295 KDIF 298
           ++  
Sbjct: 309 ENAL 312

Source: Oxalobacter formigenes OXCC13

Species: Oxalobacter formigenes

Genus: Oxalobacter

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|409404612|ref|ZP_11253091.1| tRNA delta2-isopentenylpyrophosphate transferase [Herbaspirillum sp. GW103] gi|386436131|gb|EIJ48954.1| tRNA delta2-isopentenylpyrophosphate transferase [Herbaspirillum sp. GW103]

 Score =  284 bits (726), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 139/306 (45%), Positives = 190/306 (62%), Gaps = 45/306 (14%)

Query: 35  FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPH 94
            R   VAI+GPTASGK++ AL+I+ ++PCEIIS+DSALVY +MDIGT KPS  E    PH
Sbjct: 4   HRPLAVAIMGPTASGKTAAALEIARHLPCEIISVDSALVYREMDIGTAKPSPEELAAVPH 63

Query: 95  HLIDIIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANL 154
           HLIDI++PT++YS +QF +DAL   + I  + KLPLLVGGTMLYFK LRDG+++LP A+ 
Sbjct: 64  HLIDILDPTEAYSAMQFRQDALRLTQEIAGRGKLPLLVGGTMLYFKVLRDGLDELPQADP 123

Query: 155 KLRTKFNIDINKYGISFLYDKLKLLDPVTAN----------------------------- 185
            LR + + +  + G+  ++ +L  LDPVTA                              
Sbjct: 124 VLRAQLDEEAARIGMPAMHARLATLDPVTAARLKPTDSQRIQRALEISLLTGQPMSSLLS 183

Query: 186 ----------------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPS 229
                           +P++R +LH+RI+ RF  ML    L  EV  +R + +L+L LPS
Sbjct: 184 QKPPEPLPFALLPLALEPADRAMLHERIALRFDLMLRGGALEREVAALRARGDLHLGLPS 243

Query: 230 MKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQK 289
           M+C+GYRQ WEY+DG ID   L+EK I ATRQLAK+QLTWLR+M E+I+IDC       +
Sbjct: 244 MRCVGYRQMWEYLDGSIDAAELREKGIAATRQLAKRQLTWLRSMPERISIDCNRPQATAE 303

Query: 290 ILNLIK 295
           +L  ++
Sbjct: 304 VLARVQ 309

Source: Herbaspirillum sp. GW103

Species: Herbaspirillum sp. GW103

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|300310167|ref|YP_003774259.1| tRNA delta2-isopentenylpyrophosphate transferase [Herbaspirillum seropedicae SmR1] gi|300072952|gb|ADJ62351.1| tRNA delta2-isopentenylpyrophosphate transferase protein [Herbaspirillum seropedicae SmR1]

 Score =  283 bits (725), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 137/302 (45%), Positives = 190/302 (62%), Gaps = 45/302 (14%)

Query: 40  VAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDI 99
           V+I+GPTASGK++ AL+I+ ++PCEIIS+DSALVY +MDIGT KP+  E    PHHLIDI
Sbjct: 10  VSIMGPTASGKTAAALEIARHLPCEIISVDSALVYREMDIGTAKPTPAELAQVPHHLIDI 69

Query: 100 IEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTK 159
           I+PT++YS +QF +DAL   + I+ + +LPLLVGGTMLYFK LRDG+++LP A+  LR +
Sbjct: 70  IDPTEAYSAMQFRQDALRLTQEIIARGRLPLLVGGTMLYFKVLRDGLDELPQADPALRAQ 129

Query: 160 FNIDINKYGISFLYDKLKLLDPVTAN---------------------------------- 185
            + +  + G+  ++ +L  LDPVTA                                   
Sbjct: 130 LDEEAARVGMPAMHARLAELDPVTAARLKPNDSQRIQRALEISLLTGQPMSALLAQKPAE 189

Query: 186 -----------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCIG 234
                      +PS R ILH RI+ RF  ML    L  EV+ +R + +L+L LPSM+C+G
Sbjct: 190 PLPMRLLPLALEPSERAILHDRIALRFDLMLRDGGLEREVRALRARGDLHLGLPSMRCVG 249

Query: 235 YRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQKILNLI 294
           YRQ WEY+DG ID   ++EK I ATRQLAK+QLTWLR+M E+I+IDC       ++L  +
Sbjct: 250 YRQMWEYLDGSIDAAAMREKGIAATRQLAKRQLTWLRSMPERISIDCNRPEATAEVLARV 309

Query: 295 KD 296
           ++
Sbjct: 310 RE 311

Source: Herbaspirillum seropedicae SmR1

Species: Herbaspirillum seropedicae

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|399017674|ref|ZP_10719863.1| tRNA isopentenyltransferase MiaA [Herbaspirillum sp. CF444] gi|398102441|gb|EJL92621.1| tRNA isopentenyltransferase MiaA [Herbaspirillum sp. CF444]

 Score =  281 bits (718), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 136/301 (45%), Positives = 189/301 (62%), Gaps = 45/301 (14%)

Query: 40  VAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDI 99
           VAI+GPTASGK++ AL+I+ +IPCEIIS+DSALVY +MDIGT KP+  E    PHHLIDI
Sbjct: 14  VAIMGPTASGKTAAALEIARHIPCEIISVDSALVYREMDIGTAKPNAEELAGVPHHLIDI 73

Query: 100 IEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTK 159
           ++PT SYS +QF  DAL   ++I  + KLPLLVGGTMLYFKALRDG++ LP A+  +R +
Sbjct: 74  LDPTASYSAMQFRNDALRLAQDIRARGKLPLLVGGTMLYFKALRDGLDDLPEADPAVRER 133

Query: 160 FNIDINKYGISFLYDKLKLLDPVTAN---------------------------------- 185
            + +  + G+   + +L  LDP TA                                   
Sbjct: 134 LDQEAARDGVPAQHARLATLDPETAARLKPNDSQRIQRALEIIELTGKPMSALLAQKETE 193

Query: 186 -----------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCIG 234
                      +PS R +LH+RI+ RF  ML+ D L++EV+++R + +L+L LPSM+C+G
Sbjct: 194 TLPFTLLPLALEPSERAVLHERIARRFDLMLENDGLLDEVRRLRARGDLHLGLPSMRCVG 253

Query: 235 YRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQKILNLI 294
           YRQ WEY+DG  D   ++E+ IIATRQLAK+Q+TWLR+   ++ IDC   N  Q  +N +
Sbjct: 254 YRQAWEYLDGQYDYAEMRERGIIATRQLAKRQITWLRSTPGRVVIDCNADNATQIAMNHV 313

Query: 295 K 295
           +
Sbjct: 314 R 314

Source: Herbaspirillum sp. CF444

Species: Herbaspirillum sp. CF444

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|398836370|ref|ZP_10593707.1| tRNA isopentenyltransferase MiaA [Herbaspirillum sp. YR522] gi|398212004|gb|EJM98615.1| tRNA isopentenyltransferase MiaA [Herbaspirillum sp. YR522]

 Score =  281 bits (718), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 130/287 (45%), Positives = 184/287 (64%), Gaps = 45/287 (15%)

Query: 40  VAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDI 99
           VAI+GPTASGK++ AL+++ ++PCEIIS+DSALVY  MDIGT KP+  E    PHHL+DI
Sbjct: 8   VAIMGPTASGKTAAALEVARHLPCEIISVDSALVYRGMDIGTAKPTRAELASVPHHLVDI 67

Query: 100 IEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTK 159
           ++P+++YS +QF +DAL  +++I  + +LPLLVGGTMLYFK LRDG+++LP A+  LR +
Sbjct: 68  LDPSQAYSAMQFRQDALRLVQDITARGRLPLLVGGTMLYFKVLRDGLDELPQADPALRAQ 127

Query: 160 FNIDINKYGISFLYDKLKLLDPVTAN---------------------------------- 185
            + +  + G+  ++ +L  LDP TA                                   
Sbjct: 128 LDEEAARLGMPAMHARLAELDPATAQRLKPNDSQRIQRALEITLLTGKPMSSLLAQQQAQ 187

Query: 186 -----------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCIG 234
                      +P+ R +LH RI+ RF  ML    L++EV+ +R + +L+L LPSM+C+G
Sbjct: 188 PLPFALLPLALEPAERAVLHARIALRFDMMLRDGALLDEVRALRARGDLHLGLPSMRCVG 247

Query: 235 YRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDC 281
           YRQ WEY+DG ID   L+EK I ATRQLAK+QLTWLR+M ++I IDC
Sbjct: 248 YRQAWEYLDGEIDAEALREKGIAATRQLAKRQLTWLRSMPDRIVIDC 294

Source: Herbaspirillum sp. YR522

Species: Herbaspirillum sp. YR522

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|395763877|ref|ZP_10444546.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Janthinobacterium lividum PAMC 25724]

 Score =  281 bits (718), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 142/305 (46%), Positives = 184/305 (60%), Gaps = 45/305 (14%)

Query: 39  KVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLID 98
            VAI+GPTASGK++ AL I++ IP EIIS+DSALVY  MDIGT KPS  E    PHHLID
Sbjct: 10  AVAIMGPTASGKTASALAIAQAIPSEIISVDSALVYRGMDIGTAKPSREELAAVPHHLID 69

Query: 99  IIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRT 158
           II+P  +YSV QF  D L  +  I  + KLPLLVGGTMLYFK L DG++ LP A+  LR 
Sbjct: 70  IIDPLDAYSVAQFRTDTLRLVSEITARGKLPLLVGGTMLYFKGLADGLDDLPGADPVLRA 129

Query: 159 KFNIDINKYGISFLYDKLKLLDPVTAN--------------------------------- 185
           +   D    G   ++ +L   DP+TA                                  
Sbjct: 130 QLEEDAAAIGWPAMHARLAQQDPITAARLAPQDAQRIGRALEIIALSGQPMSALLALREK 189

Query: 186 ------------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCI 233
                       +PS+R +LH RI+ RF  ML+ D L++EV+++R++ +L+  LPSM+C+
Sbjct: 190 TVLPFQLQSFALEPSDRAVLHARIATRFDVMLNNDALLDEVEQLRRRGDLHPGLPSMRCV 249

Query: 234 GYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQKILNL 293
           GYRQ WEY+DG IDR TL+E  IIATRQLAK+QLTWLR+M E+ITIDCL  +    +L  
Sbjct: 250 GYRQAWEYLDGRIDRATLRETGIIATRQLAKRQLTWLRSMPERITIDCLANDPASAMLAQ 309

Query: 294 IKDIF 298
           I  + 
Sbjct: 310 IAPLL 314

Source: Janthinobacterium lividum PAMC 25724

Species: Janthinobacterium lividum

Genus: Janthinobacterium

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|237745901|ref|ZP_04576381.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Oxalobacter formigenes HOxBLS] gi|229377252|gb|EEO27343.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Oxalobacter formigenes HOxBLS]

 Score =  280 bits (716), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 134/303 (44%), Positives = 193/303 (63%), Gaps = 45/303 (14%)

Query: 40  VAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDI 99
           +AI+GPTASGK++ AL+I+ +IP EI+S+DSALVY  MDIGT KP+  E+   PHHLIDI
Sbjct: 9   IAIMGPTASGKTAAALEIARHIPSEIVSVDSALVYRGMDIGTAKPTKEEQAAVPHHLIDI 68

Query: 100 IEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTK 159
           I+P ++YS  +F ++AL  I  I ++ KLPLL GGTMLYFKAL  G+++LPPAN  +R +
Sbjct: 69  IDPAEAYSAARFRKEALQLISEIQQRGKLPLLAGGTMLYFKALTGGLDELPPANPAIRAR 128

Query: 160 FNIDINKYGISFLYDKLKLLDPVTAN---------------------------------- 185
            + +  + G   ++ +L  LDP+TA                                   
Sbjct: 129 LDEEAARTGWPAMHKRLAELDPITARRLKPNDSQRIQRALEIIELTGKPLSTFHSGEKQT 188

Query: 186 -----------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCIG 234
                      +PS+R  LH+RI+ RF +ML+ D LI EV  +R + +L+  +PSM+C+G
Sbjct: 189 RLPFRLIPIALEPSDRSKLHERIAHRFDQMLENDRLIEEVAHLRSRDDLHPGMPSMRCVG 248

Query: 235 YRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQKILNLI 294
           YRQTW+Y+DG  DR TL++K I ATRQLAK+QLTWLR+M ++ITIDCL  +  ++++  I
Sbjct: 249 YRQTWQYLDGEFDRKTLRDKGIAATRQLAKRQLTWLRSMPDRITIDCLAPDATRQVMACI 308

Query: 295 KDI 297
            ++
Sbjct: 309 DNL 311

Source: Oxalobacter formigenes HOxBLS

Species: Oxalobacter formigenes

Genus: Oxalobacter

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|340788754|ref|YP_004754219.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Collimonas fungivorans Ter331] gi|340554021|gb|AEK63396.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Collimonas fungivorans Ter331]

 Score =  278 bits (710), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 141/302 (46%), Positives = 184/302 (60%), Gaps = 47/302 (15%)

Query: 40  VAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDI 99
           +AI+GPTASGK++ AL+I+ +IP EIIS+DSALVY  MDIGT KPS  E    PHHLIDI
Sbjct: 45  IAIMGPTASGKTAAALEIARHIPSEIISVDSALVYRGMDIGTAKPSRDELAAAPHHLIDI 104

Query: 100 IEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTK 159
           +EPT+SYS +QF +DAL     I  + KL L+VGGTMLYFKALRDG++ LP A+  LR +
Sbjct: 105 MEPTQSYSAMQFRDDALRLSAEIHARGKLVLMVGGTMLYFKALRDGLDDLPQADPALRAR 164

Query: 160 FNIDINKYGISFLYDKLKLLDPVTAN---------------------------------- 185
            + +    G+  ++ KL  LDPVTA                                   
Sbjct: 165 LDAEAALIGVPGMHAKLAQLDPVTAARLKPNDSQRIQRALEIIELSGQTMSSLLTDRPAP 224

Query: 186 -----------QPSNRHILHKRISDRFKKMLD--QDLLINEVKKIRKKWNLNLNLPSMKC 232
                      +PS+R +LH+RI+ RF  MLD     LI EV+ +R + +L+L LPSM+C
Sbjct: 225 ELPFDMLPIALEPSDRSVLHERIARRFDLMLDPQSGGLIGEVETLRARGDLHLGLPSMRC 284

Query: 233 IGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQKILN 292
           +GYRQTWEY+DGL     L+EK I ATRQLAK+QLTWLR+M E+  IDC+       +L 
Sbjct: 285 VGYRQTWEYLDGLYGYQELREKGIAATRQLAKRQLTWLRSMPERTVIDCIGDRVADTVLE 344

Query: 293 LI 294
            +
Sbjct: 345 TV 346

Source: Collimonas fungivorans Ter331

Species: Collimonas fungivorans

Genus: Collimonas

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|152979929|ref|YP_001352151.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Janthinobacterium sp. Marseille] gi|166198913|sp|A6SV54.1|MIAA_JANMA RecName: Full=tRNA dimethylallyltransferase; AltName: Full=Dimethylallyl diphosphate:tRNA dimethylallyltransferase; Short=DMAPP:tRNA dimethylallyltransferase; Short=DMATase; AltName: Full=Isopentenyl-diphosphate:tRNA isopentenyltransferase; Short=IPP transferase; Short=IPPT; Short=IPTase gi|151280006|gb|ABR88416.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Janthinobacterium sp. Marseille]

 Score =  277 bits (708), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 136/301 (45%), Positives = 183/301 (60%), Gaps = 45/301 (14%)

Query: 40  VAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDI 99
           V+I+GPTASGK++ AL ++E IP EIIS+DSALVY +MDIGT KPS  E    PHHLIDI
Sbjct: 8   VSIMGPTASGKTAAALAVAEKIPAEIISVDSALVYREMDIGTAKPSAEELAQVPHHLIDI 67

Query: 100 IEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTK 159
           ++P  SYSV+QF +DA+     I  + KLPLLVGGTMLYFK L+DG++ LP A+  LR +
Sbjct: 68  LDPLDSYSVMQFRQDAIRLAAEISARGKLPLLVGGTMLYFKGLKDGLDALPQADAALRAE 127

Query: 160 FNIDINKYGISFLYDKLKLLDPVTAN---------------------------------- 185
            + +    G   ++ KL  LDP+TA                                   
Sbjct: 128 LDAEAAAIGYPAMHAKLAALDPITAERLKPNDSQRIQRALEIIALTGQPMSALLAQAPKT 187

Query: 186 -----------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCIG 234
                      +PS+R +LH RI+ RF  ML    L++EVK +R + +L+L LPSM+C+G
Sbjct: 188 ELPFTLLPIALEPSDRSVLHTRIATRFDAMLKGGALLDEVKALRARGDLHLGLPSMRCVG 247

Query: 235 YRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQKILNLI 294
           YRQ+WEY+DG      L+E+ I ATRQLAK+QLTWLR+M+++  IDCL  +    IL  I
Sbjct: 248 YRQSWEYLDGAYSLAELRERGIAATRQLAKRQLTWLRSMDDRHIIDCLAPDASGAILQQI 307

Query: 295 K 295
           +
Sbjct: 308 E 308

Source: Janthinobacterium sp. Marseille

Species: Janthinobacterium sp. Marseille

Genus: Janthinobacterium

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|329904232|ref|ZP_08273711.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Oxalobacteraceae bacterium IMCC9480] gi|327548095|gb|EGF32820.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Oxalobacteraceae bacterium IMCC9480]

 Score =  270 bits (690), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 140/304 (46%), Positives = 182/304 (59%), Gaps = 47/304 (15%)

Query: 39  KVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLID 98
            +AI+GPTASGK++ AL I+  IP EIIS+DSALVY  MDIGT KP+  ER   PHHLID
Sbjct: 8   AIAIMGPTASGKTAAALAIASVIPSEIISVDSALVYRGMDIGTAKPTAAERAAAPHHLID 67

Query: 99  IIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRT 158
           I++P +SYS +QF    L  +  IL + KLPLLVGGTMLYFKALRDG++ LP A+  +R 
Sbjct: 68  ILDPAESYSAMQFRTATLQLVSEILARGKLPLLVGGTMLYFKALRDGLDTLPEADPDVRA 127

Query: 159 KFNIDINKYGISFLYDKLKLLDPVTAN--------------------------------- 185
             + D    G   ++ +L L+DPVTA                                  
Sbjct: 128 ALDADAALIGSPGMHARLALIDPVTAARLKPNDAQRIQRALEIHQLTGQPMSSLLAQAAP 187

Query: 186 ------------QPSNRHILHKRISDRFKKMLDQDL--LINEVKKIRKKWNLNLNLPSMK 231
                       +PS+R  LH+RI+ RF  ML  D   LI+EV  +R++ +L+  LPSM+
Sbjct: 188 VSLPFTLLPIGLEPSDRSALHERIAKRFDAMLATDGPNLIDEVIALRQRGDLHPGLPSMR 247

Query: 232 CIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQKIL 291
           C+GYRQ WEY+DG ID  TL+EK + ATRQLAK+QLTWLR M E+  IDCL+      +L
Sbjct: 248 CVGYRQAWEYLDGQIDLPTLREKGLAATRQLAKRQLTWLRAMPERHIIDCLDPQAGALVL 307

Query: 292 NLIK 295
             I+
Sbjct: 308 AQIE 311

Source: Oxalobacteraceae bacterium IMCC9480

Species: Oxalobacteraceae bacterium IMCC9480

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	298
TIGR_CMR|SO_0602	308	SO_0602 "tRNA delta(2)-isopent	0.493	0.477	0.462	1.1e-54
TIGR_CMR|CPS_0324	316	CPS_0324 "tRNA delta(2)-isopen	0.493	0.465	0.435	4.2e-51
TIGR_CMR|CBU_1082	311	CBU_1082 "tRNA delta(2)-isopen	0.486	0.466	0.427	2.3e-50
UNIPROTKB|Q9KV12	315	miaA "tRNA dimethylallyltransf	0.486	0.460	0.448	9.8e-50
TIGR_CMR|VC_0346	315	VC_0346 "tRNA delta(2)-isopent	0.486	0.460	0.448	9.8e-50
UNIPROTKB|P16384	316	miaA "tRNA(i6A37) synthase" [E	0.486	0.458	0.420	5.3e-47
TIGR_CMR|GSU_2000	311	GSU_2000 "tRNA delta(2)-isopen	0.510	0.488	0.371	1.8e-29
UNIPROTKB|Q97RW5	294	miaA "tRNA dimethylallyltransf	0.365	0.370	0.418	1.6e-28
TIGR_CMR|BA_3843	314	BA_3843 "tRNA delta(2)-isopent	0.506	0.480	0.326	8.7e-23
TIGR_CMR|CHY_1394	311	CHY_1394 "tRNA delta(2)-isopen	0.842	0.807	0.318	2.4e-21

TIGR_CMR|SO_0602 SO_0602 "tRNA delta(2)-isopentenylpyrophosphate transferase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 326 (119.8 bits), Expect = 1.1e-54, Sum P(2) = 1.1e-54
 Identities = 68/147 (46%), Positives = 97/147 (65%)

Query:    40 VAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDI 99
             V ++GPTASGK+++AL+++E   CEIIS+DSAL+Y  MDIG+ KPS  E    PH LIDI
Sbjct:    10 VFLMGPTASGKTALALELAEKHNCEIISVDSALIYRGMDIGSAKPSAEELARGPHRLIDI 69

Query:   100 IEPTKSYSVIQFCEDALFSIKNIXXXXXXXXXVGGTMLYFKALRDGINKLPPANLKLRTK 159
              +P++SYS   F  DAL  I+ I         VGGTM+YFKAL +G++ LP A+  +R  
Sbjct:    70 RDPSESYSAADFRADALSEIEQIISMGKTPLLVGGTMMYFKALLEGLSPLPSADEVIRAD 129

Query:   160 FNIDINKYGISFLYDKLKLLDPVTANQ 186
                + +  G   L+D+L+ +DPV+A +
Sbjct:   130 IQAEADANGWEALHDQLREIDPVSAER 156

GO:0006400 "tRNA modification" evidence=ISS

TIGR_CMR|CPS_0324 CPS_0324 "tRNA delta(2)-isopentenylpyrophosphate transferase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 333 (122.3 bits), Expect = 4.2e-51, Sum P(2) = 4.2e-51
 Identities = 64/147 (43%), Positives = 96/147 (65%)

Query:    40 VAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDI 99
             + ++GPTASGK+++A+ + + +PC+I+S+DSAL+Y DMDIGT KP+  E    PH LID+
Sbjct:    15 ICLMGPTASGKTALAMALKDALPCDIVSVDSALIYRDMDIGTAKPTKSELVQYPHRLIDL 74

Query:   100 IEPTKSYSVIQFCEDALFSIKNIXXXXXXXXXVGGTMLYFKALRDGINKLPPANLKLRTK 159
              + ++SYS   FC DAL  I  I         VGGTM+YFK+L +GI+ LP AN ++R  
Sbjct:    75 RDASESYSAADFCRDALVEIAEIRSNGRIPLLVGGTMMYFKSLIEGISPLPTANPEIRQA 134

Query:   160 FNIDINKYGISFLYDKLKLLDPVTANQ 186
                +    G   ++D+L  +DPV+A +
Sbjct:   135 IEAEALSKGWQAMHDQLAEIDPVSAER 161

GO:0006400 "tRNA modification" evidence=ISS

TIGR_CMR|CBU_1082 CBU_1082 "tRNA delta(2)-isopentenylpyrophosphate transferase" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 302 (111.4 bits), Expect = 2.3e-50, Sum P(2) = 2.3e-50
 Identities = 62/145 (42%), Positives = 93/145 (64%)

Query:    40 VAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDI 99
             V ++GPTASGK+ +A+ ++  +P EIIS+DSA+VY  +DIGT KP+  E ++T H LI+I
Sbjct:     8 VCLMGPTASGKTDLAIALARKLPFEIISVDSAMVYRGLDIGTAKPNEEELQLTSHRLINI 67

Query:   100 IEPTKSYSVIQFCEDALFSIKNIXXXXXXXXXVGGTMLYFKALRDGINKLPPANLKLRTK 159
              +P+  YS  QF +DAL  IK I         VGGTMLYF  L  G + LP A+  +R K
Sbjct:    68 CDPSFPYSAGQFYKDALSEIKTIEIRNRTPLLVGGTMLYFHILEQGFSDLPTADETVRKK 127

Query:   160 FNIDINKYGISFLYDKLKLLDPVTA 184
                +  ++G + ++++L  +DP +A
Sbjct:   128 IQEEAAQHGWAKIHERLNAIDPKSA 152

GO:0006400 "tRNA modification" evidence=ISS

UNIPROTKB|Q9KV12 miaA "tRNA dimethylallyltransferase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 334 (122.6 bits), Expect = 9.8e-50, Sum P(2) = 9.8e-50
 Identities = 65/145 (44%), Positives = 97/145 (66%)

Query:    42 ILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIE 101
             ++GPTASGK+ +A+++ +  P EIIS+DSAL+Y  MDIGT KP   E  + PH LIDI++
Sbjct:    11 LMGPTASGKTDLAIRLRQKYPVEIISVDSALIYRGMDIGTAKPDAQELALAPHRLIDILD 70

Query:   102 PTKSYSVIQFCEDALFSIKNIXXXXXXXXXVGGTMLYFKALRDGINKLPPANLKLRTKFN 161
             P+++YS   F  DAL  + +I         VGGTMLYFKAL +G++ LP A+  +R +  
Sbjct:    71 PSEAYSAADFRRDALKEMADIVAQGKIPLLVGGTMLYFKALLEGLSPLPAADPVIRQQIE 130

Query:   162 IDINKYGISFLYDKLKLLDPVTANQ 186
             ++  K G   L+D+L+ +DPV+A +
Sbjct:   131 LEAEKLGWQALHDQLQQIDPVSAQR 155

GO:0006400 "tRNA modification" evidence=ISS

TIGR_CMR|VC_0346 VC_0346 "tRNA delta(2)-isopentenylpyrophosphate transferase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 334 (122.6 bits), Expect = 9.8e-50, Sum P(2) = 9.8e-50
 Identities = 65/145 (44%), Positives = 97/145 (66%)

Query:    42 ILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIE 101
             ++GPTASGK+ +A+++ +  P EIIS+DSAL+Y  MDIGT KP   E  + PH LIDI++
Sbjct:    11 LMGPTASGKTDLAIRLRQKYPVEIISVDSALIYRGMDIGTAKPDAQELALAPHRLIDILD 70

Query:   102 PTKSYSVIQFCEDALFSIKNIXXXXXXXXXVGGTMLYFKALRDGINKLPPANLKLRTKFN 161
             P+++YS   F  DAL  + +I         VGGTMLYFKAL +G++ LP A+  +R +  
Sbjct:    71 PSEAYSAADFRRDALKEMADIVAQGKIPLLVGGTMLYFKALLEGLSPLPAADPVIRQQIE 130

Query:   162 IDINKYGISFLYDKLKLLDPVTANQ 186
             ++  K G   L+D+L+ +DPV+A +
Sbjct:   131 LEAEKLGWQALHDQLQQIDPVSAQR 155

GO:0006400 "tRNA modification" evidence=ISS

UNIPROTKB|P16384 miaA "tRNA(i6A37) synthase" [Escherichia coli K-12 (taxid:83333)]

 Score = 307 (113.1 bits), Expect = 5.3e-47, Sum P(2) = 5.3e-47
 Identities = 61/145 (42%), Positives = 95/145 (65%)

Query:    40 VAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDI 99
             + ++GPTASGK+++A+++ + +P E+IS+DSAL+Y  MDIGT KP+  E    PH L+DI
Sbjct:    13 IFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLLDI 72

Query:   100 IEPTKSYSVIQFCEDALFSIKNIXXXXXXXXXVGGTMLYFKALRDGINKLPPANLKLRTK 159
              +P+++YS   F  DAL  + +I         VGGTMLYFKAL +G++ LP A+ ++R +
Sbjct:    73 RDPSQAYSAADFRRDALAEMADITAAGRIPLLVGGTMLYFKALLEGLSPLPSADPEVRAR 132

Query:   160 FNIDINKYGISFLYDKLKLLDPVTA 184
                   + G   L+ +L+ +DPV A
Sbjct:   133 IEQQAAEQGWESLHRQLQEVDPVAA 157

GO:0034605 "cellular response to heat" evidence=IEP;IMP

GO:0006400 "tRNA modification" evidence=IMP

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0052381 "tRNA dimethylallyltransferase activity" evidence=IEA;IDA

TIGR_CMR|GSU_2000 GSU_2000 "tRNA delta(2)-isopentenylpyrophosphate transferase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 244 (91.0 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
 Identities = 59/159 (37%), Positives = 90/159 (56%)

Query:    37 KTKVAIL-GPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPS--IIEREITP 93
             KTK+ I+ GPTASGKS +A++++E    ++++ DS  VY  MDIGT KPS  ++ R   P
Sbjct:     8 KTKLVIIQGPTASGKSELAVRLAEACGGDVVNADSMQVYRGMDIGTAKPSPELVAR--VP 65

Query:    94 HHLIDIIEPTKSYSVIQFCEDALFSIKNIXXXXXXXXXVGGTMLYFKALRDGINKLPPAN 153
             HHL DI++P  +++   +  +A   I  I         VGGT LY K L  G+   P A+
Sbjct:    66 HHLYDIVDPDVNFTAADYRREAGRVITEIHSRGKRPILVGGTGLYIKTLIGGLAPSPGAD 125

Query:   154 LKLRTKFNIDINKYGISFLYDKLKLLDPVTANQ--PSNR 190
               +R +   D    G + L+D+L  +DP  A +  P++R
Sbjct:   126 DTIRAELEEDARSEGAAALHDRLAQVDPAAAARLHPNDR 164

GO:0006400 "tRNA modification" evidence=ISS

UNIPROTKB|Q97RW5 miaA "tRNA dimethylallyltransferase" [Streptococcus pneumoniae TIGR4 (taxid:170187)]

 Score = 213 (80.0 bits), Expect = 1.6e-28, Sum P(2) = 1.6e-28
 Identities = 46/110 (41%), Positives = 68/110 (61%)

Query:    37 KTKV-AILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHH 95
             KTK+  I+GPTA GK+++A+++++    E++S DS  VY  +DIGT K S  E+   PHH
Sbjct:     2 KTKIIVIVGPTAVGKTALAIEVAKRFNGEVVSGDSQQVYRGLDIGTAKASPEEQAAVPHH 61

Query:    96 LIDIIEPTKSYSVIQFCEDALFSIKNIXXXXXXXXXVGGTMLYFKALRDG 145
             LID+ E T+SYS   F  +A  +I+ I          GGT LY ++L +G
Sbjct:    62 LIDVREITESYSAFDFVSEAKMTIEGIHNRGKLAIIAGGTGLYIQSLLEG 111

GO:0005515 "protein binding" evidence=IPI

TIGR_CMR|BA_3843 BA_3843 "tRNA delta(2)-isopentenylpyrophosphate transferase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 191 (72.3 bits), Expect = 8.7e-23, Sum P(2) = 8.7e-23
 Identities = 50/153 (32%), Positives = 85/153 (55%)

Query:    36 RKTKVA-ILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPH 94
             ++ KVA I+GPTA GK+ +++ +++ +  EIIS DS  +Y  MDIGT K +  E +  PH
Sbjct:     2 QREKVAVIIGPTAVGKTKLSIDLAKALNGEIISGDSMQIYRTMDIGTAKVTKEEMDGIPH 61

Query:    95 HLIDIIEPTKSYSVIQFCEDALFSIKNIXXXXXXXXXVGGTMLYFKALRDGINKLPPANL 154
             +++DI  P +S+SV +F E     I+ I         VGGT LY +++         A  
Sbjct:    62 YMVDIKNPEESFSVAEFQERVRKHIREITERGKLPIIVGGTGLYIQSVLFDYQFTDDAGD 121

Query:   155 KL-RTKFNIDINKYGISFLYDKLKLLDPVTANQ 186
              + R +      + G+ +++ KL+ +DP +A +
Sbjct:   122 AIYREQMEKLALERGVEYVHKKLQEVDPESAER 154

GO:0006400 "tRNA modification" evidence=ISS

TIGR_CMR|CHY_1394 CHY_1394 "tRNA delta(2)-isopentenylpyrophosphate transferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 84/264 (31%), Positives = 137/264 (51%)

Query:    40 VAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDI 99
             + I+GPTA GKS++ +K+++ I  EIIS DS  VY  MDIGT K    ERE  PHHLIDI
Sbjct:     6 IIIVGPTAVGKSALGIKVAKKINGEIISGDSMQVYKYMDIGTAKVLPEEREGVPHHLIDI 65

Query:   100 IEPTKSYSVIQFCEDALFSIKNIXXXXXXXXXVGGTMLYFKALRDGINKLPPA-NLKLRT 158
             +EP + YSV  F ++A   IK I         VGGT LY +++ D  +    + +   R 
Sbjct:    66 LEPFQKYSVALFQKEARRLIKEINERGKIPIIVGGTGLYIRSVIDPYDFTDFSFDPVFRG 125

Query:   159 KFNIDINKYGISFLYDKLKLLDPVTANQ-PSN--RHILHK-RISDRFKKMLDQDLLINEV 214
             K      + G S+L+  L+ +DPV A +  SN  R I+    + +   K +         
Sbjct:   126 KLEQAAKEKGSSYLHQMLEKIDPVAAQKIHSNDLRRIIRALEVYEHTGKPISY--YWERG 183

Query:   215 KKIRKKWNL-NLNLPSMKCIGYRQTWEYIDGLIDRNTLKE-KSIIATRQLAKQQLTWLRN 272
             K+ + ++ L    L   + + Y++  E +D +I++  + E K ++   Q+  ++ T ++ 
Sbjct:   184 KQSKPQYRLLYYGLTMDRALLYQRINERVDKMIEKGLIAEVKRLL---QMGFKESTAMQA 240

Query:   273 MNEKITIDCLE-KNCVQKILNLIK 295
             +  K  +  LE K  + + + LIK
Sbjct:   241 LGYKEIVQYLEGKITLDEAIYLIK 264

GO:0006400 "tRNA modification" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A1VLE3	MIAA_POLNA	2, ., 5, ., 1, ., 7, 5	0.3908	0.8557	0.7703	yes	N/A
Q5WTA1	MIAA_LEGPL	2, ., 5, ., 1, ., 7, 5	0.4119	0.8590	0.8178	yes	N/A
B8CIX4	MIAA_SHEPW	2, ., 5, ., 1, ., 7, 5	0.4152	0.8557	0.8279	yes	N/A
A2S552	MIAA_BURM9	2, ., 5, ., 1, ., 7, 5	0.3935	0.8758	0.8055	yes	N/A
Q145C5	MIAA_BURXL	2, ., 5, ., 1, ., 7, 5	0.4131	0.8590	0.8126	yes	N/A
A0K4U0	MIAA_BURCH	2, ., 5, ., 1, ., 7, 5	0.4102	0.8791	0.8086	yes	N/A
A8FRD4	MIAA1_SHESH	2, ., 5, ., 1, ., 7, 5	0.4357	0.7885	0.7755	yes	N/A
B1YTV7	MIAA_BURA4	2, ., 5, ., 1, ., 7, 5	0.4070	0.8791	0.8086	yes	N/A
Q87VJ3	MIAA_PSESM	2, ., 5, ., 1, ., 7, 5	0.3794	0.8557	0.7894	yes	N/A
A2SHF3	MIAA_METPP	2, ., 5, ., 1, ., 7, 5	0.3967	0.8557	0.7798	yes	N/A
A1KA92	MIAA_AZOSB	2, ., 5, ., 1, ., 7, 5	0.4121	0.8255	0.7687	yes	N/A
Q5X1J2	MIAA_LEGPA	2, ., 5, ., 1, ., 7, 5	0.4275	0.7986	0.7603	yes	N/A
B2UBL0	MIAA_RALPJ	2, ., 5, ., 1, ., 7, 5	0.4188	0.8590	0.7876	yes	N/A
A3NYW4	MIAA_BURP0	2, ., 5, ., 1, ., 7, 5	0.3935	0.8758	0.8055	yes	N/A
Q48P03	MIAA_PSE14	2, ., 5, ., 1, ., 7, 5	0.3762	0.8557	0.7894	yes	N/A
Q63R58	MIAA_BURPS	2, ., 5, ., 1, ., 7, 5	0.3935	0.8758	0.8055	yes	N/A
A9AGA7	MIAA_BURM1	2, ., 5, ., 1, ., 7, 5	0.4012	0.8724	0.8	yes	N/A
A1V0V9	MIAA_BURMS	2, ., 5, ., 1, ., 7, 5	0.3935	0.8758	0.8055	yes	N/A
Q3SIR0	MIAA_THIDA	2, ., 5, ., 1, ., 7, 5	0.3887	0.8590	0.8178	yes	N/A
Q4ZYY1	MIAA_PSEU2	2, ., 5, ., 1, ., 7, 5	0.3729	0.8557	0.7894	yes	N/A
A3QAD9	MIAA_SHELP	2, ., 5, ., 1, ., 7, 5	0.4265	0.7852	0.7597	yes	N/A
B9MCW1	MIAA_ACIET	2, ., 5, ., 1, ., 7, 5	0.3915	0.8590	0.7925	yes	N/A
Q15NR1	MIAA_PSEA6	2, ., 5, ., 1, ., 7, 5	0.3926	0.8489	0.8031	yes	N/A
B1JW31	MIAA_BURCC	2, ., 5, ., 1, ., 7, 5	0.4070	0.8791	0.8086	yes	N/A
B4RL47	MIAA_NEIG2	2, ., 5, ., 1, ., 7, 5	0.4320	0.7919	0.7539	yes	N/A
B4EDH3	MIAA_BURCJ	2, ., 5, ., 1, ., 7, 5	0.4045	0.8724	0.7975	yes	N/A
B0TU65	MIAA_SHEHH	2, ., 5, ., 1, ., 7, 5	0.4054	0.8422	0.8149	yes	N/A
A8H8G7	MIAA_SHEPA	2, ., 5, ., 1, ., 7, 5	0.4197	0.8322	0.8378	yes	N/A
A9M4D3	MIAA_NEIM0	2, ., 5, ., 1, ., 7, 5	0.4375	0.7953	0.7571	yes	N/A
Q1BYW1	MIAA_BURCA	2, ., 5, ., 1, ., 7, 5	0.4102	0.8791	0.8086	yes	N/A
Q39JB5	MIAA_BURS3	2, ., 5, ., 1, ., 7, 5	0.4045	0.8724	0.8024	yes	N/A
Q2SYY3	MIAA_BURTA	2, ., 5, ., 1, ., 7, 5	0.3838	0.8758	0.8055	yes	N/A
Q8XWB0	MIAA_RALSO	2, ., 5, ., 1, ., 7, 5	0.4147	0.8691	0.8018	yes	N/A
B2JGD1	MIAA_BURP8	2, ., 5, ., 1, ., 7, 5	0.4032	0.8590	0.8075	yes	N/A
Q9JUU5	MIAA_NEIMA	2, ., 5, ., 1, ., 7, 5	0.4479	0.7953	0.7571	yes	N/A
Q62HE6	MIAA_BURMA	2, ., 5, ., 1, ., 7, 5	0.3935	0.8758	0.8055	yes	N/A
A5IAM8	MIAA_LEGPC	2, ., 5, ., 1, ., 7, 5	0.4086	0.8590	0.8178	yes	N/A
A6SV54	MIAA_JANMA	2, ., 5, ., 1, ., 7, 5	0.4518	0.8590	0.8152	yes	N/A
A4JBT2	MIAA_BURVG	2, ., 5, ., 1, ., 7, 5	0.4145	0.8926	0.8209	yes	N/A
Q7MBE2	MIAA_CHRVO	2, ., 5, ., 1, ., 7, 5	0.4125	0.8523	0.7815	yes	N/A
A3MN86	MIAA_BURM7	2, ., 5, ., 1, ., 7, 5	0.3935	0.8758	0.8055	yes	N/A
Q0BI05	MIAA_BURCM	2, ., 5, ., 1, ., 7, 5	0.4077	0.8724	0.8024	yes	N/A
B3R6B8	MIAA_CUPTR	2, ., 5, ., 1, ., 7, 5	0.4144	0.8489	0.7857	yes	N/A
Q1LJ94	MIAA_RALME	2, ., 5, ., 1, ., 7, 5	0.4191	0.8456	0.8	yes	N/A
A4G288	MIAA_HERAR	2, ., 5, ., 1, ., 7, 5	0.4533	0.8557	0.7968	yes	N/A
B2T068	MIAA_BURPP	2, ., 5, ., 1, ., 7, 5	0.4131	0.8590	0.8126	yes	N/A
Q1H1I4	MIAA_METFK	2, ., 5, ., 1, ., 7, 5	0.4066	0.8489	0.8031	yes	N/A
Q46XK2	MIAA_CUPPJ	2, ., 5, ., 1, ., 7, 5	0.4111	0.8489	0.7955	yes	N/A
Q3JP23	MIAA_BURP1	2, ., 5, ., 1, ., 7, 5	0.3935	0.8758	0.8055	yes	N/A
A3ND55	MIAA_BURP6	2, ., 5, ., 1, ., 7, 5	0.3935	0.8758	0.8055	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.5.1.75	0.824
3rd Layer	2.5.1	0.766

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	298
PRK00091	307	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosp	1e-104
COG0324	308	COG0324, MiaA, tRNA delta(2)-isopentenylpyrophosph	2e-86
TIGR00174	287	TIGR00174, miaA, tRNA dimethylallyltransferase	2e-66
pfam01715	253	pfam01715, IPPT, IPP transferase	5e-62
PRK14729	300	PRK14729, miaA, tRNA delta(2)-isopentenylpyrophosp	7e-31
PLN02840	421	PLN02840, PLN02840, tRNA dimethylallyltransferase	1e-27
PLN02748	468	PLN02748, PLN02748, tRNA dimethylallyltransferase	6e-23
PLN02165	334	PLN02165, PLN02165, adenylate isopentenyltransfera	9e-15
PLN02840	421	PLN02840, PLN02840, tRNA dimethylallyltransferase	4e-04
pfam13207	114	pfam13207, AAA_17, AAA domain	0.001

>gnl|CDD|234626 PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

 Score =  305 bits (783), Expect = e-104
 Identities = 112/298 (37%), Positives = 168/298 (56%), Gaps = 44/298 (14%)

Query: 40  VAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDI 99
           + I+GPTASGK+++A+++++ +  EIIS DS  VY  MDIGT KP+  ER   PHHLIDI
Sbjct: 7   IVIVGPTASGKTALAIELAKRLNGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDI 66

Query: 100 IEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTK 159
           ++PT+SYSV  F  DAL +I +IL + KLP+LVGGT LY KAL +G++ LPPA+ +LR +
Sbjct: 67  LDPTESYSVADFQRDALAAIADILARGKLPILVGGTGLYIKALLEGLSPLPPADPELRAE 126

Query: 160 FNIDINKYGISFLYDKLKLLDPVTANQ--PSN---------------------------- 189
                 + G   L+ +L  +DP  A +  P++                            
Sbjct: 127 LEALAAEEGWEALHAELAEIDPEAAARIHPNDPQRIIRALEVYELTGKPLSELQKRGKPP 186

Query: 190 ------------RHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCIGYRQ 237
                       R  L++RI+ R  +ML+Q  L+ EV+ +  +  L  +LP+M+ IGY++
Sbjct: 187 PYRVLIIGLDPDREELYERINQRVDQMLEQG-LLEEVRALLARGYLP-DLPAMRAIGYKE 244

Query: 238 TWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQKILNLIK 295
              Y+DG I      EK   ATRQ AK+QLTW R   +   +D   +  +++IL L++
Sbjct: 245 LLAYLDGEISLEEAIEKIKQATRQYAKRQLTWFRRQPDIHWLDLSPEEALEEILRLLE 302

Length = 307

>gnl|CDD|223401 COG0324, MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

 Score =  260 bits (667), Expect = 2e-86
 Identities = 108/278 (38%), Positives = 159/278 (57%), Gaps = 46/278 (16%)

Query: 40  VAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDI 99
           + I GPTASGK+++A+ +++ +  EIIS+DS  VY  +DIGT KPS+ E    PHHLIDI
Sbjct: 6   IVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYRGLDIGTAKPSLEELAGVPHHLIDI 65

Query: 100 IEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTK 159
            +PT+SYS  +F  DAL +I +IL + KLP+LVGGT LY KAL +G++ LP A+ ++R +
Sbjct: 66  RDPTESYSAAEFQRDALAAIDDILARGKLPILVGGTGLYLKALLEGLSLLPEADPEVRRR 125

Query: 160 FNIDINKYGISFLYDKLKLLDPVTANQ--PSN---------------------------- 189
              ++ + G   L+ +LK +DP  A +  P++                            
Sbjct: 126 LEAELAELGNDALHAELKKIDPEAAAKIHPNDPQRIIRALEVYYLTGKPISELQKRSRPI 185

Query: 190 --------------RHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCIGY 235
                         R +L++RI+ R   ML+Q  LI EVK +  +  L+L+LP+M+ IGY
Sbjct: 186 LEPYDILIIALAADREVLYERINRRVDAMLEQ-GLIEEVKALYAR-GLHLDLPAMQAIGY 243

Query: 236 RQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNM 273
           ++   Y+DG I      E+   ATRQ AK+QLTW RN 
Sbjct: 244 KEILAYLDGGISLEEAIERIKTATRQYAKRQLTWFRNQ 281

Length = 308

>gnl|CDD|213512 TIGR00174, miaA, tRNA dimethylallyltransferase

 Score =  209 bits (533), Expect = 2e-66
 Identities = 103/277 (37%), Positives = 152/277 (54%), Gaps = 45/277 (16%)

Query: 40  VAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDI 99
           + ++GPTASGKS +++++++ +  EIIS+DS  +Y  MDIGT KPS+ ERE  PHHLIDI
Sbjct: 2   IFLMGPTASGKSQLSIQLAQKLNAEIISVDSMQIYKGMDIGTAKPSLQEREGIPHHLIDI 61

Query: 100 IEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTK 159
           ++P++SYS   F   AL +I +I  + K+PLLVGGT LY KAL +G++  P A+  +R +
Sbjct: 62  LDPSESYSAADFQTQALNAIADITARGKIPLLVGGTGLYLKALLEGLSPTPSADKLIREQ 121

Query: 160 FNIDINKYGISFLYDKLKLLDPVTANQ--PSN---------------------------- 189
             I   + G  FLY++LK +DPV A +  P++                            
Sbjct: 122 LEILAEEQGWDFLYNELKKVDPVAAAKIHPNDTRRVQRALEVFYATGKPPSELFKEQKIE 181

Query: 190 -------------RHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCIGYR 236
                        R  LH+RI  R   ML+  LL  EVK +  +     +LPS++ IGY+
Sbjct: 182 LFYDIVQIGLASSREPLHQRIEQRVHDMLESGLL-AEVKALYAQ-YDLCDLPSIQAIGYK 239

Query: 237 QTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNM 273
           +   Y++G +      E+    TRQ AK+QLTW R  
Sbjct: 240 EFLLYLEGTVSLEDAIERIKCNTRQYAKRQLTWFRKW 276

Alternate names include delta(2)-isopentenylpyrophosphate transferase, IPP transferase, 2-methylthio-N6-isopentyladenosine tRNA modification enzyme. Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine. Understanding of substrate specificity has changed [Protein synthesis, tRNA and rRNA base modification]. Length = 287

>gnl|CDD|216659 pfam01715, IPPT, IPP transferase

 Score =  196 bits (500), Expect = 5e-62
 Identities = 93/253 (36%), Positives = 133/253 (52%), Gaps = 45/253 (17%)

Query: 71  ALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQFCEDALFSIKNILKKKKLPL 130
             VY  MDIGT KPS+ ER+  PHHLIDI++PT+SYS  +F  DAL +I  I  + K+PL
Sbjct: 1   MQVYKGMDIGTAKPSLEERKGVPHHLIDILDPTESYSAAEFQRDALEAIAEIRARGKIPL 60

Query: 131 LVGGTMLYFKALRDGINKLPPANLKLRTKFNIDINKYGISFLYDKLKLLDPVTAN--QPS 188
           LVGGT LYFKAL DG++  P A+ K+R K    + + G  +L+ +L  +DP  A    P+
Sbjct: 61  LVGGTGLYFKALLDGLSDTPSADPKVRAKLEEQLEELGNDYLHAELASVDPEAAAKIHPN 120

Query: 189 N-----------------------------------------RHILHKRISDRFKKMLDQ 207
           +                                         R +LH+RI+ R   ML+ 
Sbjct: 121 DGRRIVRALEVFYATGKPISEFQKEQKNALPYDIVQIGLARDREVLHERIARRVDDMLES 180

Query: 208 DLLINEVKKIRKKWNLNLNLPSMKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQL 267
            L+  EVK +     LN +LP+++ IGY++   Y+DG        E+ I ATRQ AK+Q+
Sbjct: 181 GLV-EEVKALY-AQGLNEDLPAIRAIGYKEFLLYLDGECTLEEAIERIIKATRQYAKRQM 238

Query: 268 TWLRNMNEKITID 280
           TW R  ++   +D
Sbjct: 239 TWFRKDSQVHWLD 251

This is a family of IPP transferases EC:2.5.1.8 also known as tRNA delta(2)-isopentenylpyrophosphate transferase. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37). Length = 253

>gnl|CDD|173191 PRK14729, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional

 Score =  116 bits (293), Expect = 7e-31
 Identities = 76/239 (31%), Positives = 113/239 (47%), Gaps = 44/239 (18%)

Query: 40  VAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDI 99
           V I GPTA GKS++     +    EII++DS  VY + DI + KPS   R+   HHL+D 
Sbjct: 7   VFIFGPTAVGKSNILFHFPKGK-AEIINVDSIQVYKEFDIASCKPSKELRKHIKHHLVDF 65

Query: 100 IEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTK 159
           +EP K Y++  F ++AL  IK + ++KK+P+ VGG+  YFK L+ G+   PP + K+R  
Sbjct: 66  LEPIKEYNLGIFYKEALKIIKELRQQKKIPIFVGGSAFYFKHLKYGLPSTPPVSSKIRIY 125

Query: 160 FNIDINKYGISFLYDKLKLLDPVTANQPSNRHI--------------------------- 192
            N      G S+L ++LK +D +     +   I                           
Sbjct: 126 VNNLFTLKGKSYLLEELKRVDFIRYESINKNDIYRIKRSLEVYYQTGIPISQFLKKQNMF 185

Query: 193 --------------LHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCIGYRQ 237
                         +  RI  R   M+D  LL +E+K +  K   N N P+ K IGYR+
Sbjct: 186 KNILAIGLKRPMEEMKSRIISRVNNMIDCGLL-SEIKSLLGK-GYNENTPAFKGIGYRE 242

Length = 300

>gnl|CDD|215451 PLN02840, PLN02840, tRNA dimethylallyltransferase

 Score =  110 bits (276), Expect = 1e-27
 Identities = 49/106 (46%), Positives = 74/106 (69%), Gaps = 1/106 (0%)

Query: 36  RKTKV-AILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPH 94
           +K KV  I GPT +GKS +AL++++ +  EIIS DS  VY  +D+G+ KPS+ ER+  PH
Sbjct: 19  KKEKVIVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDVGSAKPSLSERKEVPH 78

Query: 95  HLIDIIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFK 140
           HLIDI+ P+  YSV  F +DA  + ++IL + ++P++ GGT LY +
Sbjct: 79  HLIDILHPSDDYSVGAFFDDARRATQDILNRGRVPIVAGGTGLYLR 124

Length = 421

>gnl|CDD|215399 PLN02748, PLN02748, tRNA dimethylallyltransferase

 Score = 97.6 bits (243), Expect = 6e-23
 Identities = 55/174 (31%), Positives = 90/174 (51%), Gaps = 22/174 (12%)

Query: 40  VAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDI 99
           V ++GPT SGKS +A+ ++ + P EII+ DS  VY  +D+ TNK  + E++  PHHL+ +
Sbjct: 25  VVVMGPTGSGKSKLAVDLASHFPVEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGV 84

Query: 100 IEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKAL--------------RDG 145
           I P+  ++   F + A+  I+ IL +  LP++VGGT  Y +AL                 
Sbjct: 85  ISPSVEFTAKDFRDHAVPLIEEILSRNGLPVIVGGTNYYIQALVSPFLLDDMAEETEDCT 144

Query: 146 INKLPPANLKLRTKFNIDINKYGISFLYDKLKLLDPVTANQ--PSNRHILHKRI 197
                  +  +  +  +  +       Y+ LK LDPV AN+  P+N    H++I
Sbjct: 145 FVVASVLDEHMDVESGLGND--DEDHGYELLKELDPVAANRIHPNN----HRKI 192

Length = 468

>gnl|CDD|177823 PLN02165, PLN02165, adenylate isopentenyltransferase

 Score = 72.9 bits (179), Expect = 9e-15
 Identities = 39/109 (35%), Positives = 60/109 (55%), Gaps = 2/109 (1%)

Query: 36  RKTK-VAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPH 94
            K K V I+G T SGKS +++ ++   P EII+ D   VY  + I TN+ +I +R   PH
Sbjct: 41  CKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTNQITIQDRRGVPH 100

Query: 95  HLIDIIEPTKS-YSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKAL 142
           HL+  + P     +  +F   A  SI  I  ++KLP++ GG+  +  AL
Sbjct: 101 HLLGELNPDDGELTASEFRSLASLSISEITSRQKLPIVAGGSNSFIHAL 149

Length = 334

>gnl|CDD|215451 PLN02840, PLN02840, tRNA dimethylallyltransferase

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 30/128 (23%)

Query: 188 SNRHILHKRISDRFKKML-DQDLLINEVKKIRKKWNLNLNL-----PSMKCIGYRQTWEY 241
           S R  L++ I  R ++ML   + +++E       W L+L L      + + IGYRQ  EY
Sbjct: 241 SPRLDLYRSIDLRCEEMLAGTNGILSEAS-----WLLDLGLLPNSNSATRAIGYRQAMEY 295

Query: 242 I-----DGLIDRNTLKE------KSIIATRQLAKQQLTWLRNMNEKIT--IDCLEKNCVQ 288
           +     +G    ++ +E      K   A+R  AK+Q+TW R  NE I   +D  +   ++
Sbjct: 296 LLQCRQNG--GESSPQEFLAFLSKFQTASRNFAKRQMTWFR--NEPIYHWLDASQP--LE 349

Query: 289 KILNLIKD 296
           KIL  I D
Sbjct: 350 KILQFIYD 357

Length = 421

>gnl|CDD|221983 pfam13207, AAA_17, AAA domain

 Score = 37.7 bits (87), Expect = 0.001
 Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 39  KVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLID 98
            + I GP  SGKS++A K++E +   +IS+D  L    +    +   + + +I    L +
Sbjct: 1   IILITGPPGSGKSTLAKKLAEKLGIPVISLDDLLREEGL-AELDDGELDDIDIDLELLEE 59

Query: 99  IIEPTKSYSVI 109
           I++       +
Sbjct: 60  ILDELAKQEWV 70

Length = 114

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	298
PRK14729	300	miaA tRNA delta(2)-isopentenylpyrophosphate transf	100.0
COG0324	308	MiaA tRNA delta(2)-isopentenylpyrophosphate transf	100.0
TIGR00174	287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	100.0
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	100.0
PLN02840	421	tRNA dimethylallyltransferase	100.0
PLN02748	468	tRNA dimethylallyltransferase	100.0
PF01715	253	IPPT: IPP transferase; InterPro: IPR002627 tRNA is	100.0
PLN02165	334	adenylate isopentenyltransferase	100.0
KOG1384|consensus	348		100.0
PF01745	233	IPT: Isopentenyl transferase; InterPro: IPR002648	99.91
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	99.32
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.13
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.13
PRK00300	205	gmk guanylate kinase; Provisional	99.08
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	99.07
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.04
PTZ00301	210	uridine kinase; Provisional	99.03
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.02
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	98.94
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	98.93
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	98.9
COG0410	237	LivF ABC-type branched-chain amino acid transport	98.9
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	98.89
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	98.88
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	98.87
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	98.87
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	98.84
cd03215	182	ABC_Carb_Monos_II This family represents domain II	98.84
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	98.84
PRK15453	290	phosphoribulokinase; Provisional	98.83
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	98.83
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	98.83
PRK05480	209	uridine/cytidine kinase; Provisional	98.82
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	98.82
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	98.81
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	98.8
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	98.8
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	98.8
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	98.79
COG4559	259	ABC-type hemin transport system, ATPase component	98.78
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	98.77
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	98.77
PRK14737	186	gmk guanylate kinase; Provisional	98.76
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	98.76
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	98.76
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	98.75
PLN02348	395	phosphoribulokinase	98.75
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	98.75
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	98.74
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	98.74
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	98.74
PRK13536	340	nodulation factor exporter subunit NodI; Provision	98.74
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	98.73
PLN02318	656	phosphoribulokinase/uridine kinase	98.73
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	98.73
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	98.73
cd03246	173	ABCC_Protease_Secretion This family represents the	98.72
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	98.72
PRK04220	301	2-phosphoglycerate kinase; Provisional	98.72
COG4619	223	ABC-type uncharacterized transport system, ATPase	98.72
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	98.71
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	98.71
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	98.7
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	98.7
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	98.69
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.68
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	98.68
COG3638	258	ABC-type phosphate/phosphonate transport system, A	98.68
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	98.68
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	98.68
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	98.68
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	98.68
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	98.67
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	98.67
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	98.67
PRK13537	306	nodulation ABC transporter NodI; Provisional	98.66
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	98.66
cd03216	163	ABC_Carb_Monos_I This family represents the domain	98.66
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	98.65
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	98.65
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	98.65
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.65
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	98.65
cd03269	210	ABC_putative_ATPase This subfamily is involved in	98.64
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	98.64
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	98.64
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	98.64
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	98.64
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	98.64
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.63
COG0411	250	LivG ABC-type branched-chain amino acid transport	98.63
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	98.63
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	98.62
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	98.62
PRK07429	327	phosphoribulokinase; Provisional	98.62
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	98.61
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	98.61
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	98.6
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	98.6
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	98.59
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	98.59
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	98.59
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	98.59
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	98.59
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	98.58
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	98.58
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	98.58
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	98.58
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	98.57
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	98.57
COG4987	573	CydC ABC-type transport system involved in cytochr	98.56
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	98.55
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	98.55
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	98.55
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	98.54
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	98.54
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	98.54
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	98.54
PRK10908	222	cell division protein FtsE; Provisional	98.53
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	98.53
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	98.53
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	98.52
COG4988	559	CydD ABC-type transport system involved in cytochr	98.52
PLN02772	398	guanylate kinase	98.52
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	98.52
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	98.52
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	98.51
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	98.5
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	98.5
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	98.5
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.5
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	98.49
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	98.49
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	98.48
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	98.48
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	98.48
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	98.48
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	98.48
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	98.48
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.47
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	98.47
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	98.47
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	98.46
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	98.46
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	98.46
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	98.46
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	98.46
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	98.46
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	98.46
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	98.45
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	98.45
cd03299	235	ABC_ModC_like Archeal protein closely related to M	98.45
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	98.45
COG1127	263	Ttg2A ABC-type transport system involved in resist	98.45
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	98.45
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	98.44
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	98.44
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.43
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	98.43
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	98.43
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	98.43
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	98.43
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	98.42
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	98.42
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	98.42
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	98.42
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	98.42
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	98.41
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	98.41
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	98.41
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.41
PRK14738	206	gmk guanylate kinase; Provisional	98.41
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	98.41
COG0488	530	Uup ATPase components of ABC transporters with dup	98.4
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	98.4
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	98.4
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	98.4
COG3845	501	ABC-type uncharacterized transport systems, ATPase	98.4
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	98.4
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	98.4
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	98.4
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	98.4
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	98.39
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	98.39
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.39
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	98.39
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	98.39
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	98.38
PRK08233	182	hypothetical protein; Provisional	98.38
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	98.38
COG4152	300	ABC-type uncharacterized transport system, ATPase	98.38
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	98.38
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	98.38
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	98.38
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	98.38
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	98.38
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	98.38
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	98.38
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	98.37
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.37
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.37
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	98.37
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	98.37
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.37
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	98.37
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	98.36
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	98.36
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	98.36
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.36
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	98.36
PLN03232	1495	ABC transporter C family member; Provisional	98.36
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	98.36
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	98.36
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	98.35
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	98.35
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	98.35
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	98.35
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	98.35
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	98.35
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	98.34
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.34
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	98.34
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	98.34
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	98.34
PF00005	137	ABC_tran: ABC transporter This structure is on hol	98.34
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	98.34
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	98.34
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	98.34
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	98.33
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	98.33
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	98.33
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	98.33
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	98.32
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	98.32
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	98.32
KOG3354|consensus	191		98.32
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	98.32
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	98.31
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	98.31
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	98.31
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	98.31
COG4133	209	CcmA ABC-type transport system involved in cytochr	98.31
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	98.3
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	98.3
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	98.3
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	98.3
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	98.29
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	98.29
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	98.29
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	98.29
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	98.29
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	98.29
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	98.28
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	98.28
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	98.28
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	98.28
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	98.28
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	98.28
COG4181	228	Predicted ABC-type transport system involved in ly	98.27
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	98.27
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	98.27
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	98.27
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	98.27
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	98.27
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	98.27
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	98.27
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	98.27
PRK10261	623	glutathione transporter ATP-binding protein; Provi	98.27
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	98.27
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	98.26
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	98.26
PTZ00243	1560	ABC transporter; Provisional	98.26
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	98.26
PRK05057	172	aroK shikimate kinase I; Reviewed	98.26
PLN03130	1622	ABC transporter C family member; Provisional	98.26
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	98.26
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	98.25
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	98.24
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	98.24
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	98.24
PRK10522	547	multidrug transporter membrane component/ATP-bindi	98.23
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.23
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	98.23
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	98.23
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	98.23
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	98.23
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	98.23
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	98.23
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	98.23
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	98.22
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	98.22
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	98.22
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	98.22
PRK10938	490	putative molybdenum transport ATP-binding protein	98.21
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	98.21
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	98.21
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	98.2
PLN03211	659	ABC transporter G-25; Provisional	98.2
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	98.2
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	98.2
PRK13409	590	putative ATPase RIL; Provisional	98.2
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	98.2
KOG0057|consensus	591		98.19
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	98.19
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	98.19
PRK05439	311	pantothenate kinase; Provisional	98.19
KOG0055|consensus	1228		98.19
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	98.18
PRK14731	208	coaE dephospho-CoA kinase; Provisional	98.18
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	98.18
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	98.18
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	98.18
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	98.18
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	98.17
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	98.17
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	98.17
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	98.17
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	98.16
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	98.16
PRK00131	175	aroK shikimate kinase; Reviewed	98.16
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.16
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	98.15
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	98.15
PRK03695	248	vitamin B12-transporter ATPase; Provisional	98.15
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	98.15
KOG0058|consensus	716		98.15
PRK06547	172	hypothetical protein; Provisional	98.15
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	98.14
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	98.14
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	98.14
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	98.14
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	98.14
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	98.14
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	98.13
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	98.13
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	98.13
PRK13546	264	teichoic acids export protein ATP-binding subunit;	98.13
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	98.13
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	98.12
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	98.12
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	98.12
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	98.12
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	98.11
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	98.1
PRK11147	635	ABC transporter ATPase component; Reviewed	98.1
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	98.1
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	98.1
PRK09984	262	phosphonate/organophosphate ester transporter subu	98.09
COG1123	539	ATPase components of various ABC-type transport sy	98.09
PLN03073	718	ABC transporter F family; Provisional	98.09
PRK15064	530	ABC transporter ATP-binding protein; Provisional	98.08
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	98.08
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	98.08
PRK07261	171	topology modulation protein; Provisional	98.07
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	98.07
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	98.06
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	98.05
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	98.05
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	98.04
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	98.04
PRK10938	490	putative molybdenum transport ATP-binding protein	98.04
PRK10261	623	glutathione transporter ATP-binding protein; Provi	98.03
PRK11147	635	ABC transporter ATPase component; Reviewed	98.03
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	98.02
PRK08118	167	topology modulation protein; Reviewed	98.02
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	98.02
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	98.02
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	98.02
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	98.01
PRK10535	648	macrolide transporter ATP-binding /permease protei	98.0
cd03234	226	ABCG_White The White subfamily represents ABC tran	98.0
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	98.0
COG1123	539	ATPase components of various ABC-type transport sy	98.0
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	98.0
PRK15064	530	ABC transporter ATP-binding protein; Provisional	98.0
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	97.99
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	97.98
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	97.98
KOG0054|consensus	1381		97.98
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	97.97
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.96
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	97.96
COG4136	213	ABC-type uncharacterized transport system, ATPase	97.96
PRK13948	182	shikimate kinase; Provisional	97.96
PLN02796	347	D-glycerate 3-kinase	97.95
COG0488	530	Uup ATPase components of ABC transporters with dup	97.95
COG4172	534	ABC-type uncharacterized transport system, duplica	97.94
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	97.94
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	97.94
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	97.93
PRK09825	176	idnK D-gluconate kinase; Provisional	97.93
PRK06217	183	hypothetical protein; Validated	97.93
PRK13949	169	shikimate kinase; Provisional	97.93
PRK11545	163	gntK gluconate kinase 1; Provisional	97.9
PRK14527	191	adenylate kinase; Provisional	97.89
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	97.89
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	97.88
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	97.88
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	97.87
PRK06696	223	uridine kinase; Validated	97.87
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	97.86
KOG0055|consensus	1228		97.86
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.86
PRK07667	193	uridine kinase; Provisional	97.85
PRK13946	184	shikimate kinase; Provisional	97.85
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	97.83
COG4525	259	TauB ABC-type taurine transport system, ATPase com	97.83
KOG3308|consensus	225		97.83
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	97.81
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	97.8
COG0283	222	Cmk Cytidylate kinase [Nucleotide transport and me	97.79
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	97.79
PRK13409	590	putative ATPase RIL; Provisional	97.79
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	97.79
PRK14530	215	adenylate kinase; Provisional	97.78
PRK06762	166	hypothetical protein; Provisional	97.78
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.77
COG4674	249	Uncharacterized ABC-type transport system, ATPase	97.77
PRK12338	319	hypothetical protein; Provisional	97.77
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	97.77
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.77
PLN03140	1470	ABC transporter G family member; Provisional	97.76
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.75
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	97.74
PRK03839	180	putative kinase; Provisional	97.74
COG4586	325	ABC-type uncharacterized transport system, ATPase	97.74
PRK12337	475	2-phosphoglycerate kinase; Provisional	97.73
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.7
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	97.7
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	97.7
KOG0056|consensus	790		97.69
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	97.69
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	97.68
PRK05541	176	adenylylsulfate kinase; Provisional	97.68
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	97.67
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.67
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	97.66
PRK11860	661	bifunctional 3-phosphoshikimate 1-carboxyvinyltran	97.65
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	97.65
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.64
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	97.63
smart00382	148	AAA ATPases associated with a variety of cellular	97.63
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.62
PRK13947	171	shikimate kinase; Provisional	97.6
PF00004	132	AAA: ATPase family associated with various cellula	97.6
PLN03073	718	ABC transporter F family; Provisional	97.59
PLN02200	234	adenylate kinase family protein	97.59
PLN03130	1622	ABC transporter C family member; Provisional	97.59
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	97.59
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	97.58
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	97.58
PRK14730	195	coaE dephospho-CoA kinase; Provisional	97.58
PRK14532	188	adenylate kinase; Provisional	97.58
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	97.58
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.56
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	97.56
KOG0059|consensus	885		97.55
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	97.54
PRK00889	175	adenylylsulfate kinase; Provisional	97.54
PRK04182	180	cytidylate kinase; Provisional	97.53
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	97.52
PLN03046	460	D-glycerate 3-kinase; Provisional	97.52
PTZ00088	229	adenylate kinase 1; Provisional	97.51
PRK14531	183	adenylate kinase; Provisional	97.51
PHA02530	300	pseT polynucleotide kinase; Provisional	97.51
PLN03232	1495	ABC transporter C family member; Provisional	97.5
KOG0061|consensus	613		97.48
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	97.48
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	97.48
PRK03731	171	aroL shikimate kinase II; Reviewed	97.48
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	97.47
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	97.47
COG4172	534	ABC-type uncharacterized transport system, duplica	97.47
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	97.47
PRK03846	198	adenylylsulfate kinase; Provisional	97.45
PRK01184	184	hypothetical protein; Provisional	97.44
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.44
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	97.43
COG0645	170	Predicted kinase [General function prediction only	97.43
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	97.43
PLN02199	303	shikimate kinase	97.42
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.41
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.41
PRK04040	188	adenylate kinase; Provisional	97.41
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	97.39
PRK14528	186	adenylate kinase; Provisional	97.39
PRK00625	173	shikimate kinase; Provisional	97.39
COG4598	256	HisP ABC-type histidine transport system, ATPase c	97.39
PRK02496	184	adk adenylate kinase; Provisional	97.37
PRK08356	195	hypothetical protein; Provisional	97.37
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	97.37
PRK14733	204	coaE dephospho-CoA kinase; Provisional	97.36
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	97.34
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.34
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	97.34
KOG0064|consensus	728		97.34
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.34
PRK00279	215	adk adenylate kinase; Reviewed	97.32
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	97.31
PRK00023	225	cmk cytidylate kinase; Provisional	97.3

>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional

Probab=100.00  E-value=7e-70  Score=501.98  Aligned_cols=245  Identities=32%  Similarity=0.485  Sum_probs=233.7

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccchHHHHHHHH
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQFCEDA  115 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~~~f~~~~  115 (298)
                      .+++|+|+||||||||.|+..||+. +++|||+||+|||+|++|+|+||+.+|+.+++|||++++++.+.||+++|.+.+
T Consensus         3 ~~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~QvYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~e~~sv~~f~~~a   81 (300)
T PRK14729          3 ENKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSIQVYKEFDIASCKPSKELRKHIKHHLVDFLEPIKEYNLGIFYKEA   81 (300)
T ss_pred             CCcEEEEECCCccCHHHHHHHHHHh-CCcEEeccHHHHHCCCceecCCCCHHHHcCCCeeeeeccCCCCceeHHHHHHHH
Confidence            4569999999999999999999999 689999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhHHHhhcCCceEEEchhHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhhCHHHHHHHHhcCCccccC----------
Q psy8556         116 LFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTKFNIDINKYGISFLYDKLKLLDPVTAN----------  185 (298)
Q Consensus       116 ~~~i~~i~~~~~~~IlvGGt~~y~~~ll~~~~~~p~~d~~lr~~l~~~~~~~g~~~l~~~L~~~Dp~~a~----------  185 (298)
                      .+.|++++.+|++||+||||++|++++++|+...|+.++++|.++.+.+...|...||+.|+++||++|+          
T Consensus        82 ~~~i~~i~~~gk~PilvGGTglYi~all~gl~~~p~~~~~~r~~~~~~~~~~g~~~l~~~L~~~DP~~A~~i~pnd~~Ri  161 (300)
T PRK14729         82 LKIIKELRQQKKIPIFVGGSAFYFKHLKYGLPSTPPVSSKIRIYVNNLFTLKGKSYLLEELKRVDFIRYESINKNDIYRI  161 (300)
T ss_pred             HHHHHHHHHCCCCEEEEeCchHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHhcCHHHHhhCCcCCHHHH
Confidence            9999999999999999999999999999999888888999999999999999999999999999999988          


Q ss_pred             -------------------------------CCCChHHHHHHHHHHHHHHHhccchHHHHHHHHHhcCCCCCCCcccccC
Q psy8556         186 -------------------------------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCIG  234 (298)
Q Consensus       186 -------------------------------~~~~r~~L~~ri~~Rv~~M~~~G~l~~Ev~~l~~~~~~~~~~~~~~~IG  234 (298)
                                                     +.+||++|++||++||+.|+++| |++||+.|++. +++.+.++|++||
T Consensus       162 ~RALEv~~~tG~~~s~~~~~~~~~~~~~~i~l~~~r~~L~~rI~~Rv~~Ml~~G-lieEv~~l~~~-~~~~~~~~~~aIG  239 (300)
T PRK14729        162 KRSLEVYYQTGIPISQFLKKQNMFKNILAIGLKRPMEEMKSRIISRVNNMIDCG-LLSEIKSLLGK-GYNENTPAFKGIG  239 (300)
T ss_pred             HHHHHHHHHhCCChHhhhhccCCCCCeEEEEeCCCHHHHHHHHHHHHHHHHHCC-HHHHHHHHHhc-CCCCCCCcceeEc
Confidence                                           33589999999999999999999 99999999987 6777899999999


Q ss_pred             hhhHHHHH-cCCCCHHHHHHHHHHHHHHHHhHHHHHhcCCCCceeecCCC
Q psy8556         235 YRQTWEYI-DGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLE  283 (298)
Q Consensus       235 yke~~~~l-~g~~~~~~~~~~~~~~tr~yakrQ~twfr~~~~~~~~~~~~  283 (298)
                      |||+++|| .|+++++++++.++++||||||||+||||++++++|++.++
T Consensus       240 YkE~~~yl~~g~~~l~e~~e~i~~~Tr~yAKRQ~TWfr~~~~~~w~~~~~  289 (300)
T PRK14729        240 YREFLLWKSRPCYMLNDIINLIVKNSFLYVKRQMTFFAKIPNVLWFHPDD  289 (300)
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCCeeecCCC
Confidence            99999999 89999999999999999999999999999999999998753

>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.8e-68  Score=490.86  Aligned_cols=248  Identities=44%  Similarity=0.687  Sum_probs=239.6

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccchHHHHHHHH
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQFCEDA  115 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~~~f~~~~  115 (298)
                      ++.+++|+||||||||.|+..||+.++++|||.||+|||+|++|+|+||+.+|+.++|||++|++++.+.||+.+|.+++
T Consensus         2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvYr~mdIGTAKps~~e~~~vpHhliDi~~p~e~ysa~~f~~~a   81 (308)
T COG0324           2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYRGLDIGTAKPSLEELAGVPHHLIDIRDPTESYSAAEFQRDA   81 (308)
T ss_pred             CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhhcCCCcccCCCCCHHHHcCCCEEEecccCccccccHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhHHHhhcCCceEEEchhHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhhCHHHHHHHHhcCCccccC----------
Q psy8556         116 LFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTKFNIDINKYGISFLYDKLKLLDPVTAN----------  185 (298)
Q Consensus       116 ~~~i~~i~~~~~~~IlvGGt~~y~~~ll~~~~~~p~~d~~lr~~l~~~~~~~g~~~l~~~L~~~Dp~~a~----------  185 (298)
                      .+.+.++..+|++||+||||++|++++++|+++.|+.++.++++++..+.+.|+.+||+.|+.+||.+|.          
T Consensus        82 ~~~i~~i~~rgk~pIlVGGTglY~~aL~~g~~~~p~~~~~~r~~~~~~~~~~g~~~L~~~L~~~Dp~~a~~i~pnD~~Ri  161 (308)
T COG0324          82 LAAIDDILARGKLPILVGGTGLYLKALLEGLSLLPEADPEVRRRLEAELAELGNDALHAELKKIDPEAAAKIHPNDPQRI  161 (308)
T ss_pred             HHHHHHHHhCCCCcEEEccHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHhhCHHHHHhcCCCchhHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999888          


Q ss_pred             ----------------------------------CCCChHHHHHHHHHHHHHHHhccchHHHHHHHHHhcCCCCCCCccc
Q psy8556         186 ----------------------------------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMK  231 (298)
Q Consensus       186 ----------------------------------~~~~r~~L~~ri~~Rv~~M~~~G~l~~Ev~~l~~~~~~~~~~~~~~  231 (298)
                                                        +.++|+.|++||+.|++.|+++| |++||+.|+.. |+..+.+++|
T Consensus       162 ~RALEv~~~tGk~~s~~~~~~~~~~~~~~~~~~~l~~~r~~L~~rI~~R~d~Ml~~G-li~EV~~L~~~-g~~~~~~~~~  239 (308)
T COG0324         162 IRALEVYYLTGKPISELQKRSRPILEPYDILIIALAADREVLYERINRRVDAMLEQG-LIEEVKALYAR-GLHLDLPAMQ  239 (308)
T ss_pred             HHHHHHHHHHCCCHHHHhhcccCCCCCcceEEEEEeCCHHHHHHHHHHHHHHHHHcc-HHHHHHHHHhc-cCCccchHHH
Confidence                                              33689999999999999999999 99999999999 5889999999


Q ss_pred             ccChhhHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHhcCCCCceeecCCCch
Q psy8556         232 CIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKN  285 (298)
Q Consensus       232 ~IGyke~~~~l~g~~~~~~~~~~~~~~tr~yakrQ~twfr~~~~~~~~~~~~~~  285 (298)
                      +|||||+++||.|+++++|+++.++.+||||||||+||||++..++|++...+.
T Consensus       240 ~iGy~e~~~yl~g~~~~~ea~~~~~~~TRqyAKRQ~TWfr~~~~~~w~~~~~~~  293 (308)
T COG0324         240 AIGYKEILAYLDGGISLEEAIERIKTATRQYAKRQLTWFRNQLGVHWLDSESPD  293 (308)
T ss_pred             hcCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccCcccceeccCCcc
Confidence            999999999999999999999999999999999999999999999999987653

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)

Probab=100.00  E-value=4.9e-67  Score=480.71  Aligned_cols=243  Identities=43%  Similarity=0.697  Sum_probs=233.2

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccchHHHHHHHHHHh
Q psy8556          39 KVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQFCEDALFS  118 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~~~f~~~~~~~  118 (298)
                      +|+|+||||||||+|+..|++.+++++||+||+|||++++|+|++|++.|+.+++|||++++++.+.|++++|...+.+.
T Consensus         1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~l~IgTakp~~~e~~~v~hhlid~~~~~~~~~v~~f~~~a~~~   80 (287)
T TIGR00174         1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQEREGIPHHLIDILDPSESYSAADFQTLALNA   80 (287)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhCCCcEEEechhheeeeccccCCCCCHHHHcCccEEEEEEechhheEcHHHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHhhcCCceEEEchhHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhhCHHHHHHHHhcCCccccC-------------
Q psy8556         119 IKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTKFNIDINKYGISFLYDKLKLLDPVTAN-------------  185 (298)
Q Consensus       119 i~~i~~~~~~~IlvGGt~~y~~~ll~~~~~~p~~d~~lr~~l~~~~~~~g~~~l~~~L~~~Dp~~a~-------------  185 (298)
                      +.++.++|++||+||||++|++++++|+...|+.++++|..+++.+...|++++|+.|+++||++|+             
T Consensus        81 i~~~~~~g~~pi~vGGTg~Yi~all~g~~~~p~~~~~~r~~l~~~~~~~g~~~l~~~L~~~DP~~a~~i~~nd~~Ri~RA  160 (287)
T TIGR00174        81 IADITARGKIPLLVGGTGLYLKALLEGLSPTPSADKLIREQLEILAEEQGWDFLYNELKKVDPVAAAKIHPNDTRRVQRA  160 (287)
T ss_pred             HHHHHhCCCCEEEEcCcHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHHhcCCccHHHHHHH
Confidence            9999999999999999999999999999888888999999999999999999999999999999987             


Q ss_pred             ------------------------------CCCChHHHHHHHHHHHHHHHhccchHHHHHHHHHhcCCCCCCCcccccCh
Q psy8556         186 ------------------------------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCIGY  235 (298)
Q Consensus       186 ------------------------------~~~~r~~L~~ri~~Rv~~M~~~G~l~~Ev~~l~~~~~~~~~~~~~~~IGy  235 (298)
                                                    +.+||++|++||++||+.|+++| |++||+.|++. ++..+.+++++|||
T Consensus       161 LEi~~~tG~~~s~~~~~~~~~~~~~~~~i~l~~dr~~L~~rI~~Rv~~Mi~~G-l~eEv~~l~~~-~~~~~~~~~~aIGY  238 (287)
T TIGR00174       161 LEVFYATGKPPSELFKEQKIELFYDAVQIGLASSREPLHQRIEQRVHDMLESG-LLAEVKALYAQ-YDLCDLPSIQAIGY  238 (287)
T ss_pred             HHHHHHHCCChHHHhhccCCCCCCCeEEEEECCCHHHHHHHHHHHHHHHHHCC-HHHHHHHHHhc-cCCcCCchhhhccH
Confidence                                          33589999999999999999999 99999999987 56668999999999


Q ss_pred             hhHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHhcCCCCceeecCCC
Q psy8556         236 RQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLE  283 (298)
Q Consensus       236 ke~~~~l~g~~~~~~~~~~~~~~tr~yakrQ~twfr~~~~~~~~~~~~  283 (298)
                      ||+++||+|+++++++++.++++||||||||+||||++++++|+|+++
T Consensus       239 kE~~~~l~g~~~~~e~ie~i~~~Tr~yAKRQ~TWfR~~~~~~~~~~~~  286 (287)
T TIGR00174       239 KEFLLYLEGTVSLEDAIERIKCNTRQYAKRQLTWFRKWSDVLWLDSTD  286 (287)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEeCCCC
Confidence            999999999999999999999999999999999999999999999765

Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=100.00  E-value=2.9e-65  Score=474.32  Aligned_cols=258  Identities=43%  Similarity=0.672  Sum_probs=243.0

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccchHHHHHHHH
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQFCEDA  115 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~~~f~~~~  115 (298)
                      ++.+|+|+||||||||+|+..||+.+++++||+||+|||++++|+|++|+..|+.+++|||++..++.+.|++.+|.+.+
T Consensus         3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~~~s~~~f~~~a   82 (307)
T PRK00091          3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTESYSVADFQRDA   82 (307)
T ss_pred             CceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccceeecccccCCCCCHHHHcCccEEeecccChhhcccHHHHHHHH
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhHHHhhcCCceEEEchhHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhhCHHHHHHHHhcCCccccC----------
Q psy8556         116 LFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTKFNIDINKYGISFLYDKLKLLDPVTAN----------  185 (298)
Q Consensus       116 ~~~i~~i~~~~~~~IlvGGt~~y~~~ll~~~~~~p~~d~~lr~~l~~~~~~~g~~~l~~~L~~~Dp~~a~----------  185 (298)
                      .+.+.++..+|++||+||||++|+++++.++...|+.++.+|.++.....+.|+..+|+.|+++||.+|+          
T Consensus        83 ~~~i~~i~~~gk~pIlvGGt~~Y~~al~~g~~~~p~~~~~~r~~l~~~~~~~g~~~l~~~L~~~Dp~~a~~i~~~d~~Ri  162 (307)
T PRK00091         83 LAAIADILARGKLPILVGGTGLYIKALLEGLSPLPPADPELRAELEALAAEEGWEALHAELAEIDPEAAARIHPNDPQRI  162 (307)
T ss_pred             HHHHHHHHhCCCCEEEECcHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHhcCHHHHhhcCCCCCchh
Confidence            9999999999999999999999999999998888999999999999999999999999999999999876          


Q ss_pred             --------------------------------CCCChHHHHHHHHHHHHHHHhccchHHHHHHHHHhcCCCCCCCccccc
Q psy8556         186 --------------------------------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCI  233 (298)
Q Consensus       186 --------------------------------~~~~r~~L~~ri~~Rv~~M~~~G~l~~Ev~~l~~~~~~~~~~~~~~~I  233 (298)
                                                      +.+||++|++||++||+.|+++| |++||+.|++. ++..+.+++++|
T Consensus       163 ~RAlEi~~~tG~~~s~~~~~~~~~~~~~~~~~l~~dr~~L~~rI~~Rv~~Ml~~G-l~eEv~~l~~~-~~~~~~~~~~aI  240 (307)
T PRK00091        163 IRALEVYELTGKPLSELQKRGKPPPYRVLIIGLDPDREELYERINQRVDQMLEQG-LLEEVRALLAR-GYLPDLPAMRAI  240 (307)
T ss_pred             HHHHHHHHHHCCChhhhhhccccCCCCeEEEEEcCCHHHHHHHHHHHHHHHHHCc-HHHHHHHHHHc-CCCCCCccceee
Confidence                                            33589999999999999999999 99999999987 566789999999


Q ss_pred             ChhhHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHhcCCCCceeecCCCchHHHHHHHHHH
Q psy8556         234 GYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQKILNLIK  295 (298)
Q Consensus       234 Gyke~~~~l~g~~~~~~~~~~~~~~tr~yakrQ~twfr~~~~~~~~~~~~~~~~~~~~~~~~  295 (298)
                      ||||+++||+|+++++++++.++.+||||||||+||||++.+++|++....+..+.+++.|.
T Consensus       241 GykE~~~yl~g~~s~~e~~e~i~~~Tr~yAKRQ~TWfr~~~~~~w~~~~~~~~~~~i~~~i~  302 (307)
T PRK00091        241 GYKELLAYLDGEISLEEAIEKIKQATRQYAKRQLTWFRRQPDIHWLDLSPEEALEEILRLLE  302 (307)
T ss_pred             cHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeeecCCCchHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999665555667766554

>PLN02840 tRNA dimethylallyltransferase

Probab=100.00  E-value=1.7e-62  Score=468.70  Aligned_cols=257  Identities=33%  Similarity=0.502  Sum_probs=232.4

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccchHHHHHHH
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQFCED  114 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~~~f~~~  114 (298)
                      +++.+|+|+||||||||||+..|++.+++++|++|++|+|++++|+|++|+.+|+.+++|||+++++|.+.|++++|.++
T Consensus        19 ~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qvYr~~~IgTaKpt~eE~~~V~Hhlidil~p~e~ySv~~F~~~   98 (421)
T PLN02840         19 KKEKVIVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDVGSAKPSLSERKEVPHHLIDILHPSDDYSVGAFFDD   98 (421)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccceecceeEEcCCCCHHHHcCCCeEeEeecCCCCceeHHHHHHH
Confidence            55679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhHHHhhcCCceEEEchhHHHHHHHHccCCCCCCCCHHHHHHHHHHHHh----hCHHHHHHHH-hcCCccccC----
Q psy8556         115 ALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTKFNIDINK----YGISFLYDKL-KLLDPVTAN----  185 (298)
Q Consensus       115 ~~~~i~~i~~~~~~~IlvGGt~~y~~~ll~~~~~~p~~d~~lr~~l~~~~~~----~g~~~l~~~L-~~~Dp~~a~----  185 (298)
                      +.+.+.++..+|++||+||||++|++++++|+...|+.+++++.+++..+.+    .|++++++.| +.+|| +|+    
T Consensus        99 A~~~I~~i~~rgkiPIvVGGTGlYl~aLl~G~~~~p~~~~~~r~~l~~~l~~~~~~~g~~~l~~~Ll~~~DP-~A~~i~p  177 (421)
T PLN02840         99 ARRATQDILNRGRVPIVAGGTGLYLRWYIYGKPDVPKSSPEITSEVWSELVDFQKNGDWDAAVELVVNAGDP-KARSLPR  177 (421)
T ss_pred             HHHHHHHHHhcCCCEEEEcCccHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhccccCHHHHHHHHHhccCc-HHHhcCC
Confidence            9999999999999999999999999999999988898899999988887776    3588889985 55688 555    


Q ss_pred             ----------------------C---------------------------------------CCChHHHHHHHHHHHHHH
Q psy8556         186 ----------------------Q---------------------------------------PSNRHILHKRISDRFKKM  204 (298)
Q Consensus       186 ----------------------~---------------------------------------~~~r~~L~~ri~~Rv~~M  204 (298)
                                            .                                       ..||++||+||+.||++|
T Consensus       178 nD~~Ri~RALEV~~~TG~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~i~L~~dR~~Ly~RI~~Rvd~M  257 (421)
T PLN02840        178 NDWYRLRRSLEIIKSSGSPPSAFSLPYDSFREQLVTEDTDSSLEDGSSAETELDYDFLCFFLSSPRLDLYRSIDLRCEEM  257 (421)
T ss_pred             CcHHHHHHHHHHHHHHCCCHHHhhccccchhhccccccccccccccccccCCCCCCeEEEEeCCCHHHHHHHHHHHHHHH
Confidence                                  1                                       127999999999999999


Q ss_pred             Hh--ccchHHHHHHHHHhcCCCCC-CCcccccChhhHHHHHc------CCCCHHHHH---HHHHHHHHHHHhHHHHHhcC
Q psy8556         205 LD--QDLLINEVKKIRKKWNLNLN-LPSMKCIGYRQTWEYID------GLIDRNTLK---EKSIIATRQLAKQQLTWLRN  272 (298)
Q Consensus       205 ~~--~G~l~~Ev~~l~~~~~~~~~-~~~~~~IGyke~~~~l~------g~~~~~~~~---~~~~~~tr~yakrQ~twfr~  272 (298)
                      ++  +| |++||+.|++. ++.++ .+++++|||||+++||+      |++++++++   +.++++||||||||+||||+
T Consensus       258 l~~~~G-LleEV~~Ll~~-g~~~~~~~a~~aIGYkE~~~yL~~~~~~~G~~s~ee~~~~~e~i~~~TRqYAKRQ~TWFR~  335 (421)
T PLN02840        258 LAGTNG-ILSEASWLLDL-GLLPNSNSATRAIGYRQAMEYLLQCRQNGGESSPQEFLAFLSKFQTASRNFAKRQMTWFRN  335 (421)
T ss_pred             HHcccC-HHHHHHHHHHc-CCCccccchHHHhcHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99  99 99999999998 56655 69999999999999999      999999776   99999999999999999999


Q ss_pred             CCCceeecCCCchHHHHHHHHHHh
Q psy8556         273 MNEKITIDCLEKNCVQKILNLIKD  296 (298)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~  296 (298)
                      +++++|++.+++  .++++++|.+
T Consensus       336 ~~~~~w~~~~~~--~~~i~~~i~~  357 (421)
T PLN02840        336 EPIYHWLDASQP--LEKILQFIYD  357 (421)
T ss_pred             CCCCeEecCCCC--HHHHHHHHHH
Confidence            999999987542  4455555543

>PLN02748 tRNA dimethylallyltransferase

Probab=100.00  E-value=9.8e-61  Score=463.33  Aligned_cols=251  Identities=29%  Similarity=0.448  Sum_probs=225.5

Q ss_pred             cccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccchHHHH
Q psy8556          32 KLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQF  111 (298)
Q Consensus        32 ~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~~~f  111 (298)
                      .+..++.+|+|+||||||||+|+..||+.++++|||+|++|||+|++|+|+||+.+|+.++||||++++++.+.|++.+|
T Consensus        17 ~~~~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~p~e~ysv~~F   96 (468)
T PLN02748         17 KQKGKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVISPSVEFTAKDF   96 (468)
T ss_pred             ccCCCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecCCCCcCcHHHH
Confidence            45577889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhHHHhhcCCceEEEchhHHHHHHHHccCCC--CCC--------CCHHHHHHH--HHHHHhhCHHHHHHHHhcC
Q psy8556         112 CEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINK--LPP--------ANLKLRTKF--NIDINKYGISFLYDKLKLL  179 (298)
Q Consensus       112 ~~~~~~~i~~i~~~~~~~IlvGGt~~y~~~ll~~~~~--~p~--------~d~~lr~~l--~~~~~~~g~~~l~~~L~~~  179 (298)
                      .+.|.+.|.+++.+|++|||||||++|+++|++++..  .|+        .++.+|.++  ...+...|..++|+.|+++
T Consensus        97 ~~~A~~~I~~I~~rgk~PIlVGGTglYi~aLl~g~~~~~~p~~~~~~~~~~~~~~r~~l~~~~~~~~~g~~~l~~~L~~v  176 (468)
T PLN02748         97 RDHAVPLIEEILSRNGLPVIVGGTNYYIQALVSPFLLDDMAEETEDCTFVVASVLDEHMDVESGLGNDDEDHGYELLKEL  176 (468)
T ss_pred             HHHHHHHHHHHHhcCCCeEEEcChHHHHHHHHcCcccccCCccccccccccCHHHHHHHHHHHHHHhcCHHHHHHHHHhh
Confidence            9999999999999999999999999999999998642  232        236678887  4677788999999999999


Q ss_pred             CccccC--------------------------------------------------CCCChHHHHHHHHHHHHHHHhccc
Q psy8556         180 DPVTAN--------------------------------------------------QPSNRHILHKRISDRFKKMLDQDL  209 (298)
Q Consensus       180 Dp~~a~--------------------------------------------------~~~~r~~L~~ri~~Rv~~M~~~G~  209 (298)
                      ||.+|+                                                  +.+||++|++||++||+.|+++| 
T Consensus       177 DP~~A~rihpnD~rRI~RALEI~~~TG~~~S~~~~~~~~~~~~~~~~~~~~~~~i~l~~~r~~L~~RI~~Rvd~Mle~G-  255 (468)
T PLN02748        177 DPVAANRIHPNNHRKINRYLELYATTGVLPSKLYQGKAAENWGRISNSRFDCCFICVDADTAVLDRYVNQRVDCMIDAG-  255 (468)
T ss_pred             CHHHHhhcCCccHHHHHHHHHHHHHHCcCHHHHhhhccccccccccCCCCceEEEEeCCCHHHHHHHHHHHHHHHHHCC-
Confidence            998765                                                  12389999999999999999999 


Q ss_pred             hHHHHHHHHHhcCCCCCCCcccccChhhHHHHHc--------CC----------------------------CCHHHHHH
Q psy8556         210 LINEVKKIRKKWNLNLNLPSMKCIGYRQTWEYID--------GL----------------------------IDRNTLKE  253 (298)
Q Consensus       210 l~~Ev~~l~~~~~~~~~~~~~~~IGyke~~~~l~--------g~----------------------------~~~~~~~~  253 (298)
                      |++||+.|+.. +.....+++|+||||||++||+        |+                            .+++++++
T Consensus       256 lleEv~~l~~~-~~~~~~~~~qaIGykE~~~yL~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~eaie  334 (468)
T PLN02748        256 LLDEVYDIYDP-GADYTRGLRQAIGVREFEDFLRLYLSRNENGELTSSSNNDKVMKENSRKILNFPHDDKLKILLDEAID  334 (468)
T ss_pred             HHHHHHHHHhc-CCCCCcccceeEcHHHHHHHHHhcccccccccccccccccchhhhhhhccccccchhhhhhhHHHHHH
Confidence            99999999987 3444667899999999999998        65                            37899999


Q ss_pred             HHHHHHHHHHhHHHHHhcCC-----CCceeecCCCc
Q psy8556         254 KSIIATRQLAKQQLTWLRNM-----NEKITIDCLEK  284 (298)
Q Consensus       254 ~~~~~tr~yakrQ~twfr~~-----~~~~~~~~~~~  284 (298)
                      .++.+||||||||+||||+.     .+++|+|.++.
T Consensus       335 ~ik~~Tr~yAKRQ~tw~~rl~~~~~~~i~~lD~t~~  370 (468)
T PLN02748        335 QVKLNTRRLVRRQKRRLHRLNTVFGWNIHYIDATEA  370 (468)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhcccCCeeEeechhh
Confidence            99999999999999999985     47899997754

>PF01715 IPPT: IPP transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2

Probab=100.00  E-value=2.9e-58  Score=417.61  Aligned_cols=209  Identities=41%  Similarity=0.662  Sum_probs=187.8

Q ss_pred             ceEeccccCCCCCCCHHHHcccccccccccCcCccchHHHHHHHHHHhhHHHhhcCCceEEEchhHHHHHHHHccCCCCC
Q psy8556          71 ALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLP  150 (298)
Q Consensus        71 ~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~~~f~~~~~~~i~~i~~~~~~~IlvGGt~~y~~~ll~~~~~~p  150 (298)
                      +|||+|++|+|+||+.+|+.++||||++++++.+.||+++|.+.|.+.|.++.++|++||+||||++|++|+++|+.++|
T Consensus         1 mQvYr~ldIgTaKps~~e~~~vpHhlid~~~p~e~ysv~~f~~~a~~~i~~i~~rgk~PIlvGGTglYi~all~g~~~~p   80 (253)
T PF01715_consen    1 MQVYRGLDIGTAKPSPEERAGVPHHLIDILDPDEEYSVGDFQRDAREAIEDILARGKIPILVGGTGLYIQALLNGLADIP   80 (253)
T ss_dssp             STTBTT-CTTTT---HHHHTTS-EESSS-B-TTS---HHHHHHHHHHHHHHHHHTT-EEEEEES-HHHHHHHHCTS--TS
T ss_pred             CCccCCCceeeCCCCHHHHcCCCEeeeeeecccCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHHHhChhhhc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999998899


Q ss_pred             CCCHHHHHHHHHHHHhhCHHHHHHHHhcCCccccC-------------------------------------------CC
Q psy8556         151 PANLKLRTKFNIDINKYGISFLYDKLKLLDPVTAN-------------------------------------------QP  187 (298)
Q Consensus       151 ~~d~~lr~~l~~~~~~~g~~~l~~~L~~~Dp~~a~-------------------------------------------~~  187 (298)
                      +.|+.+|..++..+...|..+||+.|+++||.+|+                                           +.
T Consensus        81 ~~~~~~r~~~~~~~~~~~~~~l~~~L~~~DP~~A~~i~~nd~~Ri~RALei~~~tG~~~s~~~~~~~~~~~~~~~~i~L~  160 (253)
T PF01715_consen   81 EVDPELRAELRAELEEEGNEELYEELKEVDPEAAAKIHPNDRRRIIRALEIYELTGKPPSEWQKKQKPPPRYDFLVIGLD  160 (253)
T ss_dssp             SSHHHHHHHHHHHHHHSCHHHHHHHHHHC-HHHHCTS-TT-HHHHHHHHHHHHHHSS-HHHHHHCHHHCBSSEEEEEEEE
T ss_pred             cccHHHHHHHHHHHHhccHHHHHHHHHhhCcHhhhcCCCCcHHHHHHHHHHHHhcCCChhHhhhcccccccCCeEEEEeC
Confidence            99999999999999999999999999999999987                                           44


Q ss_pred             CChHHHHHHHHHHHHHHHhccchHHHHHHHHHhcCCCCCCCcccccChhhHHHHHcCCCCHHHHHHHHHHHHHHHHhHHH
Q psy8556         188 SNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQL  267 (298)
Q Consensus       188 ~~r~~L~~ri~~Rv~~M~~~G~l~~Ev~~l~~~~~~~~~~~~~~~IGyke~~~~l~g~~~~~~~~~~~~~~tr~yakrQ~  267 (298)
                      +||+.|++||++||++|+++| |++||+.|++. ++..+.+++++|||||+++||+|+++++++++.++.+||||||||+
T Consensus       161 ~~r~~L~~RI~~Rvd~Ml~~G-lleEv~~L~~~-~~~~~~~~~~aIGYkE~~~~l~g~~~~~e~~e~i~~~TrqyAKRQ~  238 (253)
T PF01715_consen  161 RDREELYERINKRVDEMLEQG-LLEEVRALLER-GLPPDLPAMQAIGYKEFIDYLEGEISLEEAIERIKTNTRQYAKRQR  238 (253)
T ss_dssp             SSHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHT-TGGTTSCGGGSTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHc-CCCCcchhceeeehHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            699999999999999999999 99999999999 5778899999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCceeecC
Q psy8556         268 TWLRNMNEKITIDC  281 (298)
Q Consensus       268 twfr~~~~~~~~~~  281 (298)
                      ||||++.+++|+|+
T Consensus       239 TWfr~~~~~~w~d~  252 (253)
T PF01715_consen  239 TWFRNQPNIHWIDI  252 (253)
T ss_dssp             HHHHTTSSEEEEET
T ss_pred             HHhCCCCCCeeeeC
Confidence            99999999999985

5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) [].; GO: 0005524 ATP binding, 0008033 tRNA processing; PDB: 2ZXU_A 3FOZ_A 2ZM5_B 3D3Q_A 3EXA_B 2QGN_A 3A8T_A 3EPK_B 3EPH_A 3EPJ_A ....

>PLN02165 adenylate isopentenyltransferase

Probab=100.00  E-value=1.2e-54  Score=403.82  Aligned_cols=237  Identities=26%  Similarity=0.340  Sum_probs=199.0

Q ss_pred             ccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCc-cchHHHH
Q psy8556          33 LLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTK-SYSVIQF  111 (298)
Q Consensus        33 ~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e-~~s~~~f  111 (298)
                      ++.++++++|+||||||||||+..||+.++++||++|++|||+|++|+|++|+..++.+++||+++.+++.+ .|++.+|
T Consensus        39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgTakpt~~er~gv~Hhli~~~~~~~~~~sv~~F  118 (334)
T PLN02165         39 QNCKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTNQITIQDRRGVPHHLLGELNPDDGELTASEF  118 (334)
T ss_pred             cCCCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccccCCCCHHHHcCCChhhhheeccccceeeHHHH
Confidence            567888999999999999999999999999999999999999999999999999999999999999999986 8999999


Q ss_pred             HHHHHHhhHHHhhcCCceEEEchhHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhhCHHHHHHHHhcCCccccCCCCChH
Q psy8556         112 CEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTKFNIDINKYGISFLYDKLKLLDPVTANQPSNRH  191 (298)
Q Consensus       112 ~~~~~~~i~~i~~~~~~~IlvGGt~~y~~~ll~~~~~~p~~d~~lr~~l~~~~~~~g~~~l~~~L~~~Dp~~a~~~~~r~  191 (298)
                      .+.+...+.++..++++||+||||++|+++++.++.+ |..++.        .  -|...+-..+ ..++..--+..||+
T Consensus       119 ~~~a~~~I~~i~~~~~~PI~vGGTglYi~aLl~g~~d-pe~~p~--------~--tg~~~~s~~~-~~~~~~i~l~~dr~  186 (334)
T PLN02165        119 RSLASLSISEITSRQKLPIVAGGSNSFIHALLADRFD-PEIYPF--------S--SGSSLISSDL-RYDCCFIWVDVSEP  186 (334)
T ss_pred             HHHHHHHHHHHHHCCCcEEEECChHHHHHHHHcCCCC-CccChh--------h--cCCCcccccc-CCCeEEEEECCCHH
Confidence            9999999999999999999999999999999998643 222220        0  1111000000 11111111445999


Q ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHhcCCCC--CCCcccccChhhHHHHHc--------CCC------CHHHHHHHH
Q psy8556         192 ILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNL--NLPSMKCIGYRQTWEYID--------GLI------DRNTLKEKS  255 (298)
Q Consensus       192 ~L~~ri~~Rv~~M~~~G~l~~Ev~~l~~~~~~~~--~~~~~~~IGyke~~~~l~--------g~~------~~~~~~~~~  255 (298)
                      +|++||++||+.|+++| |++||+.|++. ++..  ..+++|+|||||+++||+        |++      +++++++.+
T Consensus       187 ~L~~RI~~Rvd~Ml~~G-lldEv~~L~~~-~~~~~~~~~~~qaIGYkE~~~yL~~~~~~~~~g~~~~~~~~~l~e~ie~i  264 (334)
T PLN02165        187 VLFEYLSKRVDEMMDSG-MFEELAEFYDP-VKSGSEPLGIRKAIGVPEFDRYFKKYPPENKMGKWDQARKAAYEEAVREI  264 (334)
T ss_pred             HHHHHHHHHHHHHHHCC-HHHHHHHHHHc-cCCcccCCCceeEEcHHHHHHHHHhccccccCCccchhhhhhHHHHHHHH
Confidence            99999999999999999 99999999987 4544  458999999999999998        655      599999999


Q ss_pred             HHHHHHHHhHHHHHhcCCCC----ceeecCCC
Q psy8556         256 IIATRQLAKQQLTWLRNMNE----KITIDCLE  283 (298)
Q Consensus       256 ~~~tr~yakrQ~twfr~~~~----~~~~~~~~  283 (298)
                      +.+||||||||+||||++++    ++|+|.++
T Consensus       265 k~~TrqYAKRQ~TWfR~~~~~~~~~~~lD~t~  296 (334)
T PLN02165        265 KENTCQLAKRQIEKIMKLKSAGWDIKRVDATA  296 (334)
T ss_pred             HHHHHHHHHHHHHHhcCCcccCCcEEEEechh
Confidence            99999999999999999854    56788653

>KOG1384|consensus

Probab=100.00  E-value=2.3e-44  Score=328.66  Aligned_cols=224  Identities=29%  Similarity=0.373  Sum_probs=185.1

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccchHHHHHHHH
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQFCEDA  115 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~~~f~~~~  115 (298)
                      |-++++|+|+||||||.|+..||..++++||+.|++|||+|++|+|++++..|..++||||++.+.+..+|++.+|...+
T Consensus         6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~~F~~~a   85 (348)
T KOG1384|consen    6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAGEFEDDA   85 (348)
T ss_pred             CceEEEEecCCCCChhhhHHHHHHhCCceeecccceeeecCcccccccCChhhcCCCChHHhCcCChHhhccHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhHHHhhcCCceEEEchhHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhhCH--HHHHHHHhcCCccccCCCCChHHH
Q psy8556         116 LFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTKFNIDINKYGI--SFLYDKLKLLDPVTANQPSNRHIL  193 (298)
Q Consensus       116 ~~~i~~i~~~~~~~IlvGGt~~y~~~ll~~~~~~p~~d~~lr~~l~~~~~~~g~--~~l~~~L~~~Dp~~a~~~~~r~~L  193 (298)
                      ...+++++.+|++||++|||++|+++++.+-.+. ..|+-...        .|.  ..+     +-|+-.-=+..+..+|
T Consensus        86 ~~aie~I~~rgk~PIv~GGs~~yi~al~~~~~d~-~~dp~~~~--------~g~~pS~l-----ryd~c~lWlda~~~VL  151 (348)
T KOG1384|consen   86 SRAIEEIHSRGKLPIVVGGSNSYLQALLSKRFDP-KIDPFSSN--------TGSIPSEL-----RYDCCFLWLDADQAVL  151 (348)
T ss_pred             HHHHHHHHhCCCCCEEeCCchhhHHHHhhcCCCc-ccCccccc--------CCCCCccc-----ccceEEEEEecchHHH
Confidence            9999999999999999999999999999774332 11111000        000  000     1111000034589999


Q ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHhcCCCCCCCcccccChhhHHHHHcCC------C------CHHHHHHHHHHHHHH
Q psy8556         194 HKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCIGYRQTWEYIDGL------I------DRNTLKEKSIIATRQ  261 (298)
Q Consensus       194 ~~ri~~Rv~~M~~~G~l~~Ev~~l~~~~~~~~~~~~~~~IGyke~~~~l~g~------~------~~~~~~~~~~~~tr~  261 (298)
                      ++++++|||+|++.| |+||++.++....-+...+.-++||+.|+..|++-.      +      .++++++.|+.+||+
T Consensus       152 ~~~l~~RVD~Ml~~G-l~eE~~~f~~~~~s~~~~~i~~~iGv~e~d~f~~~~~~~~~k~d~~~~~~l~~aie~iK~nT~~  230 (348)
T KOG1384|consen  152 FERLDKRVDDMLESG-LLEELRDFYDPYNSSYRSGIRKAIGVPEFDGFKEFYPWLTDKWDLARKELLEKAIEAIKENTRR  230 (348)
T ss_pred             HHHHHHHHHHHHHcc-hHHHHHHHhhhhhcCccccchhccCcHHHhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999 999999999874333345567888888888887632      1      278999999999999


Q ss_pred             HHhHHHHHhcCCC
Q psy8556         262 LAKQQLTWLRNMN  274 (298)
Q Consensus       262 yakrQ~twfr~~~  274 (298)
                      |||||.+|+.+..
T Consensus       231 lakrQ~~~I~~l~  243 (348)
T KOG1384|consen  231 LAKRQKRKIEKLF  243 (348)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999999863

>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid []

Probab=99.91  E-value=4.5e-24  Score=186.06  Aligned_cols=205  Identities=19%  Similarity=0.255  Sum_probs=147.4

Q ss_pred             eEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcC-ccchHHHHHHHHH
Q psy8556          38 TKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPT-KSYSVIQFCEDAL  116 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~-e~~s~~~f~~~~~  116 (298)
                      ++++|+||||+|||.++..||+.+++++|+.|+.|+|.+++++|++|++.++.++++.+++..... ..+++.+..+...
T Consensus         2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~i~a~ea~~~Li   81 (233)
T PF01745_consen    2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGIINAEEAHERLI   81 (233)
T ss_dssp             EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S--HHHHHHHHH
T ss_pred             cEEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCCcCHHHHHHHHH
Confidence            579999999999999999999999999999999999999999999999999999999877766554 3688888888777


Q ss_pred             HhhHHHhhcCCceEEEchhHHHHHHHHccCCC-CCCCCHHHHHHHHHHHHhhCHHHHHHHHhcCCccccCCCCChHHHHH
Q psy8556         117 FSIKNILKKKKLPLLVGGTMLYFKALRDGINK-LPPANLKLRTKFNIDINKYGISFLYDKLKLLDPVTANQPSNRHILHK  195 (298)
Q Consensus       117 ~~i~~i~~~~~~~IlvGGt~~y~~~ll~~~~~-~p~~d~~lr~~l~~~~~~~g~~~l~~~L~~~Dp~~a~~~~~r~~L~~  195 (298)
                      ..+..+.. ++.+|+.|||-..++.+..+... .|..-. +                 .+++        ++ +++....
T Consensus        82 ~~v~~~~~-~~~~IlEGGSISLl~~m~~~~~w~~~f~w~-i-----------------~rl~--------l~-d~~~f~~  133 (233)
T PF01745_consen   82 SEVNSYSA-HGGLILEGGSISLLNCMAQDPYWSLDFRWH-I-----------------RRLR--------LP-DEEVFMA  133 (233)
T ss_dssp             HHHHTTTT-SSEEEEEE--HHHHHHHHH-TTTSSSSEEE-E-----------------EE--------------HHHHHH
T ss_pred             HHHHhccc-cCceEEeCchHHHHHHHHhcccccCCCeEE-E-----------------EEEE--------CC-ChHHHHH
Confidence            77777766 78899999999999998865322 221100 0                 0010        34 8999999


Q ss_pred             HHHHHHHHHHhc-----cchHHHHHHHHHhcCCCCCCCccccc-ChhhHHHHHcCC-C-----------CHHHHHHHHHH
Q psy8556         196 RISDRFKKMLDQ-----DLLINEVKKIRKKWNLNLNLPSMKCI-GYRQTWEYIDGL-I-----------DRNTLKEKSII  257 (298)
Q Consensus       196 ri~~Rv~~M~~~-----G~l~~Ev~~l~~~~~~~~~~~~~~~I-Gyke~~~~l~g~-~-----------~~~~~~~~~~~  257 (298)
                      |+.+||.+|+.-     + +++|+..+++.   +...++++.| ||+.++.|.+.. +           ..+++++.|..
T Consensus       134 ra~~Rv~~ML~p~~~~~S-ll~EL~~lW~~---p~~r~~ledIdGyr~~i~~a~~~~v~~~~l~~~~~~~~~~Li~~ia~  209 (233)
T PF01745_consen  134 RAKRRVRQMLRPDSSGPS-LLEELVALWND---PALRPILEDIDGYRYIIRFARKHQVTPDQLLSIDLDMLQELIEGIAE  209 (233)
T ss_dssp             HHHHHHHHHHS--SSS---HHHHHHHHHTS---TTHHHHHTTSTTHHHHHHHHHHTT--GGGCCG-THHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCCCc-HHHHHHHHHhC---ccccchHhhhccHHHHHHHHHHhCCCHHHHHHhhHHHHHHHHHHHHH
Confidence            999999999974     5 99999999976   4568899999 999999998632 1           25688999999


Q ss_pred             HHHHHHhHHHHHhcCCC
Q psy8556         258 ATRQLAKQQLTWLRNMN  274 (298)
Q Consensus       258 ~tr~yakrQ~twfr~~~  274 (298)
                      ....||..|.+=|=..+
T Consensus       210 eY~~ha~~QEq~F~~~~  226 (233)
T PF01745_consen  210 EYLEHAQWQEQEFPQVP  226 (233)
T ss_dssp             HHHHHHHHHHHHS----
T ss_pred             HHHHHHHHHHHhccCCc
Confidence            99999999999887653

; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=99.32  E-value=1.7e-12  Score=114.54  Aligned_cols=148  Identities=21%  Similarity=0.332  Sum_probs=101.8

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCe---EeecCCceEeccccCCC---------CCCCHHHHcccccccccccCc
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCE---IISIDSALVYCDMDIGT---------NKPSIIEREITPHHLIDIIEP  102 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~---iis~Ds~qvy~g~~i~t---------~kp~~~e~~~v~~~l~~~~~~  102 (298)
                      +++.+|+|.|+|||||||+++.|+..++++   +|+.|+  +|++....+         ..|.+.+...+..||..+...
T Consensus         6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~--YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g   83 (218)
T COG0572           6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDD--YYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQG   83 (218)
T ss_pred             CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccc--cccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcC
Confidence            345899999999999999999999999865   888898  676554432         345566666666566555443


Q ss_pred             Cc-cchHHHHHHHHHHhhHHHhhcCCceEEEchhHHHHHHHHccCCCC-----CCCCHHHHHHHHHHHHhhCHH---HHH
Q psy8556         103 TK-SYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKL-----PPANLKLRTKFNIDINKYGIS---FLY  173 (298)
Q Consensus       103 ~e-~~s~~~f~~~~~~~i~~i~~~~~~~IlvGGt~~y~~~ll~~~~~~-----p~~d~~lr~~l~~~~~~~g~~---~l~  173 (298)
                      .. .....+|...-+.. ..+.-.+.-+|++.|...+...-+.++.++     .+.|..+-|++.+++.++|.+   .+-
T Consensus        84 ~~v~~P~yd~~~~~r~~-~~i~~~p~~VVIvEGi~~l~d~~lr~~~d~kIfvdtd~D~RliRri~RD~~~rg~~~e~vi~  162 (218)
T COG0572          84 KPVDLPVYDYKTHTREP-ETIKVEPNDVVIVEGILLLYDERLRDLMDLKIFVDTDADVRLIRRIKRDVQERGRDLESVIE  162 (218)
T ss_pred             CcccccccchhcccccC-CccccCCCcEEEEecccccccHHHHhhcCEEEEEeCCccHHHHHHHHHHHHHhCCCHHHHHH
Confidence            32 23334444432222 233344566788888888777666665554     467888999999999988865   666


Q ss_pred             HHHhcCCccccC
Q psy8556         174 DKLKLLDPVTAN  185 (298)
Q Consensus       174 ~~L~~~Dp~~a~  185 (298)
                      +++..+-|.+..
T Consensus       163 qy~~~vkp~~~~  174 (218)
T COG0572         163 QYVKTVRPMYEQ  174 (218)
T ss_pred             HHHHhhChhhhh
Confidence            777777776655

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.13  E-value=1.2e-10  Score=109.53  Aligned_cols=145  Identities=18%  Similarity=0.155  Sum_probs=92.6

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe-ccccCCCCCCCHHH
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY-CDMDIGTNKPSIIE   88 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy-~g~~i~t~kp~~~e   88 (298)
                      ..++.|+... .+++++.     .-++|++++|+||||||||||++.||++..     +++|+|+ .|.++....|....
T Consensus         8 ~v~K~yg~~~-~l~~i~l-----~i~~Gef~vllGPSGcGKSTlLr~IAGLe~-----~~~G~I~i~g~~vt~l~P~~R~   76 (338)
T COG3839           8 NVRKSFGSFE-VLKDVNL-----DIEDGEFVVLLGPSGCGKSTLLRMIAGLEE-----PTSGEILIDGRDVTDLPPEKRG   76 (338)
T ss_pred             eeEEEcCCce-eeecceE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECCCCChhHCC
Confidence            4567777665 5555555     224577899999999999999999999887     9999994 77787766666655


Q ss_pred             Hcccccc--cccccCcCccchHHHH---------HH---HHHH--hhHHHhhcCCceEEEchhH---HHHHHHHcc----
Q psy8556          89 REITPHH--LIDIIEPTKSYSVIQF---------CE---DALF--SIKNILKKKKLPLLVGGTM---LYFKALRDG----  145 (298)
Q Consensus        89 ~~~v~~~--l~~~~~~~e~~s~~~f---------~~---~~~~--~i~~i~~~~~~~IlvGGt~---~y~~~ll~~----  145 (298)
                      +..+.+.  |+..++..+++...--         .+   .+.+  .+.+++++ ++--++||..   ...+|++..    
T Consensus        77 iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r-~P~~LSGGQrQRVAlaRAlVr~P~v~  155 (338)
T COG3839          77 IAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNR-KPLQLSGGQRQRVALARALVRKPKVF  155 (338)
T ss_pred             EEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhc-CcccCChhhHHHHHHHHHHhcCCCEE
Confidence            5555542  2222333333222111         11   1111  12233333 3446899988   678999987    


Q ss_pred             CCCCCCC--CHHHHHHHHHHHHh
Q psy8556         146 INKLPPA--NLKLRTKFNIDINK  166 (298)
Q Consensus       146 ~~~~p~~--d~~lr~~l~~~~~~  166 (298)
                      +.|.|-+  |..+|..++.++.+
T Consensus       156 L~DEPlSnLDa~lR~~mr~ei~~  178 (338)
T COG3839         156 LLDEPLSNLDAKLRVLMRSEIKK  178 (338)
T ss_pred             EecCchhHhhHHHHHHHHHHHHH
Confidence            6677754  77788777766553

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.13  E-value=3e-10  Score=101.20  Aligned_cols=145  Identities=19%  Similarity=0.142  Sum_probs=83.5

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHH
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIE   88 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e   88 (298)
                      ...++|..+.....-++.++-.-  ++|++++|+||||||||||++.|++...     +++|.| +.|.++...  +..+
T Consensus         6 ~v~k~y~~~~~~~~~L~~v~l~i--~~Ge~vaI~GpSGSGKSTLLniig~ld~-----pt~G~v~i~g~d~~~l--~~~~   76 (226)
T COG1136           6 NVSKIYGLGGEKVEALKDVNLEI--EAGEFVAIVGPSGSGKSTLLNLLGGLDK-----PTSGEVLINGKDLTKL--SEKE   76 (226)
T ss_pred             eeEEEeccCCcceEecccceEEE--cCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCceEEECCEEcCcC--CHHH
Confidence            35677876654333344433332  6688999999999999999999977665     899997 688777643  3333


Q ss_pred             Hccccccccccc----CcCccchHHHHHHH-----------HHHhhHHHhh--------cCCce-EEEchhH---HHHHH
Q psy8556          89 REITPHHLIDII----EPTKSYSVIQFCED-----------ALFSIKNILK--------KKKLP-LLVGGTM---LYFKA  141 (298)
Q Consensus        89 ~~~v~~~l~~~~----~~~e~~s~~~f~~~-----------~~~~i~~i~~--------~~~~~-IlvGGt~---~y~~~  141 (298)
                      +..++..-++++    ..-+.+|+.+....           ..+.+.++..        ..+.| -++||-.   ...+|
T Consensus        77 ~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARA  156 (226)
T COG1136          77 LAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARA  156 (226)
T ss_pred             HHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHH
Confidence            333333222222    22234444444331           1112222211        11334 6899976   57799


Q ss_pred             HHcc----CCCCCCC--CHHHHHHHHHH
Q psy8556         142 LRDG----INKLPPA--NLKLRTKFNID  163 (298)
Q Consensus       142 ll~~----~~~~p~~--d~~lr~~l~~~  163 (298)
                      ++.+    +.|.|+.  |.+-...+.+.
T Consensus       157 L~~~P~iilADEPTgnLD~~t~~~V~~l  184 (226)
T COG1136         157 LINNPKIILADEPTGNLDSKTAKEVLEL  184 (226)
T ss_pred             HhcCCCeEEeeCccccCChHHHHHHHHH
Confidence            9876    3456653  55544444433

>PRK00300 gmk guanylate kinase; Provisional

Probab=99.08  E-value=4.6e-11  Score=104.57  Aligned_cols=118  Identities=21%  Similarity=0.220  Sum_probs=70.9

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccc-------
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSY-------  106 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~-------  106 (298)
                      .++|++|+|+||||||||||++.|++.++.         +|...+++|.+|...+..+..+++++.......+       
T Consensus         2 ~~~g~~i~i~G~sGsGKstl~~~l~~~~~~---------~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~   72 (205)
T PRK00300          2 MRRGLLIVLSGPSGAGKSTLVKALLERDPN---------LQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLE   72 (205)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHhhCcc---------ceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEE
Confidence            467899999999999999999999987641         4555666777777766666666554322111100       


Q ss_pred             --hH-HHHHHHHHHhhHHHhhcCCceEE---EchhHHHHHHHHcc--CCCCCCCCHHHHHHH
Q psy8556         107 --SV-IQFCEDALFSIKNILKKKKLPLL---VGGTMLYFKALRDG--INKLPPANLKLRTKF  160 (298)
Q Consensus       107 --s~-~~f~~~~~~~i~~i~~~~~~~Il---vGGt~~y~~~ll~~--~~~~p~~d~~lr~~l  160 (298)
                        ++ ...+......+......|..+|+   .+|...+.+.+...  +...|++...+++|+
T Consensus        73 ~~~~~~~~y~~~~~~i~~~l~~g~~vi~dl~~~g~~~l~~~~~~~~~I~i~~~s~~~l~~Rl  134 (205)
T PRK00300         73 WAEVFGNYYGTPRSPVEEALAAGKDVLLEIDWQGARQVKKKMPDAVSIFILPPSLEELERRL  134 (205)
T ss_pred             EEEECCccccCcHHHHHHHHHcCCeEEEeCCHHHHHHHHHhCCCcEEEEEECcCHHHHHHHH
Confidence              00 11111224456777788888776   45655555555433  222344445555554

>TIGR03263 guanyl_kin guanylate kinase

Probab=99.07  E-value=9.5e-11  Score=100.40  Aligned_cols=116  Identities=22%  Similarity=0.221  Sum_probs=67.6

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccchHH-------
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVI-------  109 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~~-------  109 (298)
                      |++|+|+||||||||||++.|++.++...+         ...++|.+|...+..+..+++++...+...+..+       
T Consensus         1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~---------~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (180)
T TIGR03263         1 GLLIVISGPSGVGKSTLVKALLEEDPNLKF---------SISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAE   71 (180)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHccCccccc---------cccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEE
Confidence            568999999999999999999987653222         1233455555555555555544322111111111       


Q ss_pred             ---HHHHHHHHhhHHHhhcCCceEE---EchhHHHHHHHHc--cCCCCCCCCHHHHHHHH
Q psy8556         110 ---QFCEDALFSIKNILKKKKLPLL---VGGTMLYFKALRD--GINKLPPANLKLRTKFN  161 (298)
Q Consensus       110 ---~f~~~~~~~i~~i~~~~~~~Il---vGGt~~y~~~ll~--~~~~~p~~d~~lr~~l~  161 (298)
                         .++......+...+..|+.+|+   .+|...+.+++..  .+...|++++.+++++.
T Consensus        72 ~~~~~y~~~~~~i~~~~~~g~~vi~d~~~~~~~~~~~~~~~~~~i~~~~~~~e~~~~Rl~  131 (180)
T TIGR03263        72 VHGNYYGTPKSPVEEALAAGKDVLLEIDVQGARQVKKKFPDAVSIFILPPSLEELERRLR  131 (180)
T ss_pred             ECCeeeCCcHHHHHHHHHCCCeEEEECCHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHH
Confidence               1122224556777888999888   5666666666533  23334665666666553

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.04  E-value=6.1e-10  Score=105.28  Aligned_cols=145  Identities=18%  Similarity=0.205  Sum_probs=87.5

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHH
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIE   88 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e   88 (298)
                      .++|.|+ ....++|++.     .-++|++++|+|||||||||++++||+...     +|+|+| +.|.++..-.|....
T Consensus        10 ~v~k~yg-~~~av~~isl-----~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~-----p~~G~I~l~G~~i~~lpp~kR~   78 (352)
T COG3842          10 NVSKSFG-DFTAVDDISL-----DIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ-----PSSGEILLDGEDITDVPPEKRP   78 (352)
T ss_pred             eeeeecC-CeeEEeccee-----eecCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECCCCChhhcc
Confidence            4678888 4455556555     124567899999999999999999998876     999999 588888865555544


Q ss_pred             Hcccccc--cccccCcCccchHH----------H---HHHHHHHhh--HHHhhcCCceEEEchhH---HHHHHHHcc---
Q psy8556          89 REITPHH--LIDIIEPTKSYSVI----------Q---FCEDALFSI--KNILKKKKLPLLVGGTM---LYFKALRDG---  145 (298)
Q Consensus        89 ~~~v~~~--l~~~~~~~e~~s~~----------~---f~~~~~~~i--~~i~~~~~~~IlvGGt~---~y~~~ll~~---  145 (298)
                      ...+.+.  |+..+++.++.-.+          +   -...+.+.+  .+ ...-++.=++||-.   -..+||...   
T Consensus        79 ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~-~~~R~p~qLSGGQqQRVALARAL~~~P~v  157 (352)
T COG3842          79 IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEG-FADRKPHQLSGGQQQRVALARALVPEPKV  157 (352)
T ss_pred             cceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchh-hhhhChhhhChHHHHHHHHHHHhhcCcch
Confidence            4444332  22223333321110          0   111111111  11 11223335788877   467887765   


Q ss_pred             -CCCCC--CCCHHHHHHHHHHHHh
Q psy8556         146 -INKLP--PANLKLRTKFNIDINK  166 (298)
Q Consensus       146 -~~~~p--~~d~~lr~~l~~~~~~  166 (298)
                       +.|.|  .-|..+|..++.++.+
T Consensus       158 LLLDEPlSaLD~kLR~~mr~Elk~  181 (352)
T COG3842         158 LLLDEPLSALDAKLREQMRKELKE  181 (352)
T ss_pred             hhhcCcccchhHHHHHHHHHHHHH
Confidence             44556  3478888888777654

>PTZ00301 uridine kinase; Provisional

Probab=99.03  E-value=3e-10  Score=100.70  Aligned_cols=147  Identities=19%  Similarity=0.234  Sum_probs=78.0

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhC----C---CeEeecCCceEeccccCCC---------CCCCHHHHcccccccccc
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYI----P---CEIISIDSALVYCDMDIGT---------NKPSIIEREITPHHLIDI   99 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l----~---~~iis~Ds~qvy~g~~i~t---------~kp~~~e~~~v~~~l~~~   99 (298)
                      +..+|+|.||||||||||+..|++.+    +   ..+++.|.  +|+......         ..|...+...+.+++..+
T Consensus         2 ~~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~--yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l~~L   79 (210)
T PTZ00301          2 PCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDF--YYRDQSNIPESERAYTNYDHPKSLEHDLLTTHLREL   79 (210)
T ss_pred             CCEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCC--CccCcccCCHHHhcCCCCCChhhhCHHHHHHHHHHH
Confidence            34789999999999999999887655    2   23667776  555432110         112222222222222222


Q ss_pred             cCcCc-cchHHHHHHHHHHhhHHHhhcCCceEEEchhHHHHHHHHccCCCC-----CCCCHHHHHHHHHHHHhhCHH---
Q psy8556         100 IEPTK-SYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKL-----PPANLKLRTKFNIDINKYGIS---  170 (298)
Q Consensus       100 ~~~~e-~~s~~~f~~~~~~~i~~i~~~~~~~IlvGGt~~y~~~ll~~~~~~-----p~~d~~lr~~l~~~~~~~g~~---  170 (298)
                      ..... .+...+|...... -..+.-.....|++.|...|...-+.++.++     .+.+..+.|++.|+..++|..   
T Consensus        80 ~~g~~i~~P~yd~~~~~~~-~~~~~i~p~~ViIvEGi~~l~~~~l~~l~D~~ifvd~~~d~~~~Rr~~Rd~~~rG~~~e~  158 (210)
T PTZ00301         80 KSGKTVQIPQYDYVHHTRS-DTAVTMTPKSVLIVEGILLFTNAELRNEMDCLIFVDTPLDICLIRRAKRDMRERGRTFES  158 (210)
T ss_pred             HcCCcccCCCcccccCCcC-CceEEeCCCcEEEEechhhhCCHHHHHhCCEEEEEeCChhHHHHHHHhhhHHhcCCCHHH
Confidence            21110 0111112111000 0001112334577888887643333333332     456788888999998877654   


Q ss_pred             HHHHHHhcCCccccC
Q psy8556         171 FLYDKLKLLDPVTAN  185 (298)
Q Consensus       171 ~l~~~L~~~Dp~~a~  185 (298)
                      .+.++...++|..+.
T Consensus       159 v~~~~~~~v~~~~~~  173 (210)
T PTZ00301        159 VIEQYEATVRPMYYA  173 (210)
T ss_pred             HHHHHHHhhcccHHH
Confidence            566677777876654

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.02  E-value=2.8e-09  Score=92.07  Aligned_cols=147  Identities=14%  Similarity=0.070  Sum_probs=90.5

Q ss_pred             hhhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCC--
Q psy8556           9 DRDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPS--   85 (298)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~--   85 (298)
                      .+++|.||.+..-+.++++     +-++|+++.|+||||||||||++.|.+...     +++|+| +.|.++...+-.  
T Consensus         5 ~~V~k~Y~~g~~aL~~vs~-----~i~~Gef~fl~GpSGAGKSTllkLi~~~e~-----pt~G~i~~~~~dl~~l~~~~i   74 (223)
T COG2884           5 ENVSKAYPGGREALRDVSF-----HIPKGEFVFLTGPSGAGKSTLLKLIYGEER-----PTRGKILVNGHDLSRLKGREI   74 (223)
T ss_pred             hhhhhhcCCCchhhhCceE-----eecCceEEEEECCCCCCHHHHHHHHHhhhc-----CCCceEEECCeeccccccccc
Confidence            4689999999767788777     234567899999999999999999988776     889998 688888754321  


Q ss_pred             HHHHccc---c--cccccccCcCccc---------hHHHHHHHHHHhhHHHh----hcCCceEEEchhH---HHHHHHHc
Q psy8556          86 IIEREIT---P--HHLIDIIEPTKSY---------SVIQFCEDALFSIKNIL----KKKKLPLLVGGTM---LYFKALRD  144 (298)
Q Consensus        86 ~~e~~~v---~--~~l~~~~~~~e~~---------s~~~f~~~~~~~i~~i~----~~~~~~IlvGGt~---~y~~~ll~  144 (298)
                      +.-++.+   .  |.|+...+..++.         +-.++.+.+.+.++-.-    .+.-++.++||-.   ...+|+++
T Consensus        75 P~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~  154 (223)
T COG2884          75 PFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVN  154 (223)
T ss_pred             chhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHcc
Confidence            1111221   1  1233333333322         12233333333332211    1222447899977   56788887


Q ss_pred             c----CCCCCC--CCHHHHHHHHHHHH
Q psy8556         145 G----INKLPP--ANLKLRTKFNIDIN  165 (298)
Q Consensus       145 ~----~~~~p~--~d~~lr~~l~~~~~  165 (298)
                      .    +.|.|+  .|+++.+++.+.+.
T Consensus       155 ~P~vLlADEPTGNLDp~~s~~im~lfe  181 (223)
T COG2884         155 QPAVLLADEPTGNLDPDLSWEIMRLFE  181 (223)
T ss_pred             CCCeEeecCCCCCCChHHHHHHHHHHH
Confidence            6    446675  37877777655443

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.94  E-value=8e-09  Score=90.93  Aligned_cols=140  Identities=18%  Similarity=0.212  Sum_probs=78.3

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHHH
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIER   89 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e~   89 (298)
                      .+|.|+ +.+.+++++.     .-.+|++++|+||||||||||+++|.++-.     +|+|+| +.|.++.... ....+
T Consensus         8 l~K~fg-~~~VLkgi~l-----~v~~Gevv~iiGpSGSGKSTlLRclN~LE~-----~~~G~I~i~g~~~~~~~-~~~~~   75 (240)
T COG1126           8 LSKSFG-DKEVLKGISL-----SVEKGEVVVIIGPSGSGKSTLLRCLNGLEE-----PDSGSITVDGEDVGDKK-DILKL   75 (240)
T ss_pred             eeEEeC-CeEEecCcce-----eEcCCCEEEEECCCCCCHHHHHHHHHCCcC-----CCCceEEECCEeccchh-hHHHH
Confidence            456665 4455555555     225678999999999999999999987665     899999 4776654332 11111


Q ss_pred             ----cccccc--cccccCcCccchHHHH------HHHHHHhhHHHhh-------cCCce-EEEchhH---HHHHHHHcc-
Q psy8556          90 ----EITPHH--LIDIIEPTKSYSVIQF------CEDALFSIKNILK-------KKKLP-LLVGGTM---LYFKALRDG-  145 (298)
Q Consensus        90 ----~~v~~~--l~~~~~~~e~~s~~~f------~~~~~~~i~~i~~-------~~~~~-IlvGGt~---~y~~~ll~~-  145 (298)
                          .-+.++  |+..++..++.+.+.-      ...|.+...++++       ....| -++||-.   -..+||.-. 
T Consensus        76 R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P  155 (240)
T COG1126          76 RRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDP  155 (240)
T ss_pred             HHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCC
Confidence                122222  2222333333322211      1122222222221       12334 5789977   466777643 


Q ss_pred             ---CCCCCCC--CHHHHHHHHH
Q psy8556         146 ---INKLPPA--NLKLRTKFNI  162 (298)
Q Consensus       146 ---~~~~p~~--d~~lr~~l~~  162 (298)
                         ++|.|++  ||++...+..
T Consensus       156 ~vmLFDEPTSALDPElv~EVL~  177 (240)
T COG1126         156 KVMLFDEPTSALDPELVGEVLD  177 (240)
T ss_pred             CEEeecCCcccCCHHHHHHHHH
Confidence               5677754  8988776644

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=98.93  E-value=5.7e-09  Score=96.99  Aligned_cols=142  Identities=16%  Similarity=0.103  Sum_probs=83.7

Q ss_pred             hhhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCC-H
Q psy8556           9 DRDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPS-I   86 (298)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~-~   86 (298)
                      ...++.|+.+...++++++     .-++|++++|+||||||||||+++|++...     +++|.| +.|.+....... .
T Consensus         8 ~~l~k~~~~~~~~l~~vs~-----~i~~Gei~gllG~NGAGKTTllk~l~gl~~-----p~~G~i~i~G~~~~~~~~~~~   77 (293)
T COG1131           8 RNLTKKYGGDKTALDGVSF-----EVEPGEIFGLLGPNGAGKTTLLKILAGLLK-----PTSGEILVLGYDVVKEPAKVR   77 (293)
T ss_pred             cceEEEeCCCCEEEeceeE-----EEcCCeEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEEcCEeCccCHHHHH
Confidence            3467788766677777776     224466899999999999999999988776     899999 688776643111 1


Q ss_pred             HHHcccccccccccCcCccchHHHHHHHH-----------HHhhHHHhhc--------CCceEEEchhH---HHHHHHHc
Q psy8556          87 IEREITPHHLIDIIEPTKSYSVIQFCEDA-----------LFSIKNILKK--------KKLPLLVGGTM---LYFKALRD  144 (298)
Q Consensus        87 ~e~~~v~~~l~~~~~~~e~~s~~~f~~~~-----------~~~i~~i~~~--------~~~~IlvGGt~---~y~~~ll~  144 (298)
                      ..+..+++.    ....+.+|+.++....           .+.+.++++.        .++--+++|..   ....+++.
T Consensus        78 ~~igy~~~~----~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~  153 (293)
T COG1131          78 RRIGYVPQE----PSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLH  153 (293)
T ss_pred             hheEEEccC----CCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhc
Confidence            222333332    2233444544433321           1122222211        11233677766   46677776


Q ss_pred             c----CCCCCCC--CHHHHHHHHHHH
Q psy8556         145 G----INKLPPA--NLKLRTKFNIDI  164 (298)
Q Consensus       145 ~----~~~~p~~--d~~lr~~l~~~~  164 (298)
                      +    +.|.|.+  |+..+..+.+.+
T Consensus       154 ~P~lliLDEPt~GLDp~~~~~~~~~l  179 (293)
T COG1131         154 DPELLILDEPTSGLDPESRREIWELL  179 (293)
T ss_pred             CCCEEEECCCCcCCCHHHHHHHHHHH
Confidence            5    3456653  676666655443

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=98.90  E-value=1e-09  Score=99.67  Aligned_cols=54  Identities=24%  Similarity=0.311  Sum_probs=44.3

Q ss_pred             hhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          18 QRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      +..++.|+++     .-++|++++|+||||||||||+++|++.++     +.+|+| ..|.++.+
T Consensus        14 ~~~il~~ls~-----~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~-----p~~G~V~l~g~~i~~   68 (258)
T COG1120          14 GKPILDDLSF-----SIPKGEITGILGPNGSGKSTLLKCLAGLLK-----PKSGEVLLDGKDIAS   68 (258)
T ss_pred             CeeEEecceE-----EecCCcEEEEECCCCCCHHHHHHHHhccCC-----CCCCEEEECCCchhh
Confidence            6677777776     224567999999999999999999998887     899999 48877765

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=98.90  E-value=4.2e-09  Score=93.40  Aligned_cols=72  Identities=19%  Similarity=0.124  Sum_probs=56.0

Q ss_pred             ccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHHHcc
Q psy8556          13 ETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIEREI   91 (298)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e~~~   91 (298)
                      ++|++..+.+.+.++     .-++|++++|+||||+|||||++.|++..+     +.+|+| |.|.+++..+|...-..+
T Consensus        10 ~~~YG~~~~L~gvsl-----~v~~Geiv~llG~NGaGKTTlLkti~Gl~~-----~~~G~I~~~G~dit~~p~~~r~r~G   79 (237)
T COG0410          10 SAGYGKIQALRGVSL-----EVERGEIVALLGRNGAGKTTLLKTIMGLVR-----PRSGRIIFDGEDITGLPPHERARLG   79 (237)
T ss_pred             eecccceeEEeeeee-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeeEEECCeecCCCCHHHHHhCC
Confidence            456666887777776     224577999999999999999999998877     778998 799999876666655555


Q ss_pred             ccc
Q psy8556          92 TPH   94 (298)
Q Consensus        92 v~~   94 (298)
                      +.+
T Consensus        80 i~~   82 (237)
T COG0410          80 IAY   82 (237)
T ss_pred             eEe
Confidence            543

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.89  E-value=3.1e-09  Score=95.33  Aligned_cols=141  Identities=18%  Similarity=0.143  Sum_probs=79.6

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHH
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIE   88 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e   88 (298)
                      .++++|++ ...+.|+++   ..  .+|++++|+||||||||||++.+|++..     +++|+| ..|..+.  .|.+ +
T Consensus         8 ~v~~~f~~-~~vl~~i~L---~v--~~GEfvsilGpSGcGKSTLLriiAGL~~-----p~~G~V~~~g~~v~--~p~~-~   73 (248)
T COG1116           8 GVSKSFGG-VEVLEDINL---SV--EKGEFVAILGPSGCGKSTLLRLIAGLEK-----PTSGEVLLDGRPVT--GPGP-D   73 (248)
T ss_pred             eeEEEeCc-eEEecccee---EE--CCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCcccC--CCCC-C
Confidence            45667776 333333333   22  5688999999999999999999999887     889988 4666652  2221 2


Q ss_pred             Hccccc--ccccccCcCccchHH---------HHHHHHHHhhHHH---hhcCCce-EEEchhH---HHHHHHHcc----C
Q psy8556          89 REITPH--HLIDIIEPTKSYSVI---------QFCEDALFSIKNI---LKKKKLP-LLVGGTM---LYFKALRDG----I  146 (298)
Q Consensus        89 ~~~v~~--~l~~~~~~~e~~s~~---------~f~~~~~~~i~~i---~~~~~~~-IlvGGt~---~y~~~ll~~----~  146 (298)
                      +..+.+  .|+...+..+|..+.         +-...+.+.++..   -..++.| -++||..   ...+++...    +
T Consensus        74 ~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLL  153 (248)
T COG1116          74 IGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLL  153 (248)
T ss_pred             EEEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEE
Confidence            233322  222223333332211         1111222222211   0123444 5899987   577888865    4


Q ss_pred             CCCCCC--CHHHHHHHHHHH
Q psy8556         147 NKLPPA--NLKLRTKFNIDI  164 (298)
Q Consensus       147 ~~~p~~--d~~lr~~l~~~~  164 (298)
                      .|.|.+  |.-.|..+.+++
T Consensus       154 lDEPFgALDalTR~~lq~~l  173 (248)
T COG1116         154 LDEPFGALDALTREELQDEL  173 (248)
T ss_pred             EcCCcchhhHHHHHHHHHHH
Confidence            466643  666666665544

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=98.88  E-value=1.1e-08  Score=90.04  Aligned_cols=62  Identities=19%  Similarity=0.154  Sum_probs=47.0

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTN   82 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~   82 (298)
                      .+..|+++...+.++++     .-.+|++++|+||||||||||++.|++.+.     +++|+| +.|.++.+.
T Consensus         6 l~~~~~~~~~~l~~~sl-----~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~i~~~   68 (214)
T cd03292           6 VTKTYPNGTAALDGINI-----SISAGEFVFLVGPSGAGKSTLLKLIYKEEL-----PTSGTIRVNGQDVSDL   68 (214)
T ss_pred             EEEEeCCCceeeeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEEcccC
Confidence            45667655556666655     224577899999999999999999998876     789998 677776543

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=98.87  E-value=5.8e-09  Score=91.92  Aligned_cols=60  Identities=20%  Similarity=0.177  Sum_probs=44.6

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      .+..|++ ..++.++++     .-.+|++++|+||||||||||++.|++.+.     +++|+| +.|.++..
T Consensus         6 l~~~~~~-~~il~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~   66 (213)
T cd03259           6 LSKTYGS-VRALDDLSL-----TVEPGEFLALLGPSGCGKTTLLRLIAGLER-----PDSGEILIDGRDVTG   66 (213)
T ss_pred             eEEEeCC-eeeecceeE-----EEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEEcCc
Confidence            4556654 345555554     224577899999999999999999998776     789998 57766643

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=98.87  E-value=2.2e-09  Score=92.44  Aligned_cols=116  Identities=18%  Similarity=0.140  Sum_probs=78.6

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccchH-------
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSV-------  108 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~-------  108 (298)
                      +|.+++|+||||+|||||.+.|....          .+.-.++.+|.+|.+.|..++.+|+++...+.....-       
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~----------~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a   72 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDD----------KLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWA   72 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhc----------CeEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEE
Confidence            68899999999999999999997654          2444456789999999999999998875443322221       


Q ss_pred             ---HHHHHHHHHhhHHHhhcCCceEEE-chhH-HHHHHHHcc---CCCCCCCCHHHHHHHH
Q psy8556         109 ---IQFCEDALFSIKNILKKKKLPLLV-GGTM-LYFKALRDG---INKLPPANLKLRTKFN  161 (298)
Q Consensus       109 ---~~f~~~~~~~i~~i~~~~~~~Ilv-GGt~-~y~~~ll~~---~~~~p~~d~~lr~~l~  161 (298)
                         +.|+......+...+..|+.+|+. ..-+ ..++.-+-+   ++..||+-.++++|+.
T Consensus        73 ~~~gnyYGT~~~~ve~~~~~G~~vildId~qGa~qvk~~~p~~v~IFi~pPs~eeL~~RL~  133 (191)
T COG0194          73 EYHGNYYGTSREPVEQALAEGKDVILDIDVQGALQVKKKMPNAVSIFILPPSLEELERRLK  133 (191)
T ss_pred             EEcCCcccCcHHHHHHHHhcCCeEEEEEehHHHHHHHHhCCCeEEEEEcCCCHHHHHHHHH
Confidence               234444566777888888888763 3222 233333322   3455887676666653

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=98.84  E-value=1.6e-08  Score=90.71  Aligned_cols=61  Identities=23%  Similarity=0.281  Sum_probs=45.3

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      .+..|+++...+.++++     .-.+|++++|+||||||||||++.|++.+.     +++|+| +.|.++..
T Consensus         6 l~~~~~~~~~~l~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~   67 (241)
T cd03256           6 LSKTYPNGKKALKDVSL-----SINPGEFVALIGPSGAGKSTLLRCLNGLVE-----PTSGSVLIDGTDINK   67 (241)
T ss_pred             EEEecCCccEEEecceE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCCceEEECCEeccc
Confidence            45667653445566554     224577899999999999999999998876     788998 57766653

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.84  E-value=2.3e-08  Score=86.22  Aligned_cols=43  Identities=16%  Similarity=0.138  Sum_probs=36.6

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTN   82 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~   82 (298)
                      ++|++++|+||||||||||++.|++.++     +++|+| +.|.++...
T Consensus        24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~   67 (182)
T cd03215          24 RAGEIVGIAGLVGNGQTELAEALFGLRP-----PASGEITLDGKPVTRR   67 (182)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECCcc
Confidence            5678999999999999999999998876     889998 577666543

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=98.84  E-value=2.2e-08  Score=89.52  Aligned_cols=181  Identities=15%  Similarity=0.142  Sum_probs=98.4

Q ss_pred             hcccCchhh---hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCH
Q psy8556          11 DTETDPQQR---QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSI   86 (298)
Q Consensus        11 ~~~~~~~~~---~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~   86 (298)
                      .+.+|+.+.   ..++++++     .-.+|++++|+|+||||||||++.|++...     +++|+| +.|......++..
T Consensus         9 l~~~y~~~~~~~~~l~~VS~-----~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~-----p~~G~I~~~G~~~~~~~~~~   78 (252)
T COG1124           9 LSIVYGGGKFAFHALNNVSL-----EIERGETLGIVGESGSGKSTLARLLAGLEK-----PSSGSILLDGKPLAPKKRAK   78 (252)
T ss_pred             eEEEecCCcchhhhhcceeE-----EecCCCEEEEEcCCCCCHHHHHHHHhcccC-----CCCceEEECCcccCccccch
Confidence            456787777   45555555     224577899999999999999999998877     899999 5776655433333


Q ss_pred             ---HHHcccccccccccCcCccchHHHHHHHHHH---------hhHHHhh---------cCCceEEEchhH---HHHHHH
Q psy8556          87 ---IEREITPHHLIDIIEPTKSYSVIQFCEDALF---------SIKNILK---------KKKLPLLVGGTM---LYFKAL  142 (298)
Q Consensus        87 ---~e~~~v~~~l~~~~~~~e~~s~~~f~~~~~~---------~i~~i~~---------~~~~~IlvGGt~---~y~~~l  142 (298)
                         ...+.+.++-..-+.|.  .++.+-...+..         .+.+++.         .-.+.=++||--   -..+|+
T Consensus        79 ~~~~~VQmVFQDp~~SLnP~--~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL  156 (252)
T COG1124          79 AFYRPVQMVFQDPYSSLNPR--RTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARAL  156 (252)
T ss_pred             hhccceeEEecCCccccCcc--hhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHh
Confidence               23333444433333332  233222221111         1222221         223334788866   466777


Q ss_pred             Hcc----CCCCCCC--CHHHHHHHHHHHHhhCHHHHHHHHhcCCccccCCCCChHHHHHHHHHHHHHHHhccchHHH
Q psy8556         143 RDG----INKLPPA--NLKLRTKFNIDINKYGISFLYDKLKLLDPVTANQPSNRHILHKRISDRFKKMLDQDLLINE  213 (298)
Q Consensus       143 l~~----~~~~p~~--d~~lr~~l~~~~~~~g~~~l~~~L~~~Dp~~a~~~~~r~~L~~ri~~Rv~~M~~~G~l~~E  213 (298)
                      .-.    +.|.|.+  |..++..+.+.+.+....        .+-.+--+. .--.+-.+++.||--| ++|.++|+
T Consensus       157 ~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~--------~~lt~l~Is-Hdl~~v~~~cdRi~Vm-~~G~ivE~  223 (252)
T COG1124         157 IPEPKLLILDEPTSALDVSVQAQILNLLLELKKE--------RGLTYLFIS-HDLALVEHMCDRIAVM-DNGQIVEI  223 (252)
T ss_pred             ccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHh--------cCceEEEEe-CcHHHHHHHhhheeee-eCCeEEEe
Confidence            744    3455543  677777765554332111        000000011 2335566788888554 45524443

>PRK15453 phosphoribulokinase; Provisional

Probab=98.83  E-value=2.7e-09  Score=97.91  Aligned_cols=151  Identities=17%  Similarity=0.126  Sum_probs=80.6

Q ss_pred             ccCCCeEEEEECCCchhHHHHHHHHHhhCC-----CeEeecCCceEec--cc------------cCCCCCCCHHHHcccc
Q psy8556          33 LLFRKTKVAILGPTASGKSSVALKISEYIP-----CEIISIDSALVYC--DM------------DIGTNKPSIIEREITP   93 (298)
Q Consensus        33 ~~~kg~iI~I~GpTGSGKSTLa~~La~~l~-----~~iis~Ds~qvy~--g~------------~i~t~kp~~~e~~~v~   93 (298)
                      |++++.+|+|+|+|||||||+++.|+..++     ..+++.|+..-|.  ++            ++..-.|.+.+...+.
T Consensus         1 Ms~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~   80 (290)
T PRK15453          1 MSAKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELE   80 (290)
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHH
Confidence            467889999999999999999999998764     4578888844331  11            1111113333333222


Q ss_pred             cccccccCcC----ccchHHHHHH---H--HHHhh--HHHhhcCCceEEEchhHHH-HH--HHHccCCCC-----CCCCH
Q psy8556          94 HHLIDIIEPT----KSYSVIQFCE---D--ALFSI--KNILKKKKLPLLVGGTMLY-FK--ALRDGINKL-----PPANL  154 (298)
Q Consensus        94 ~~l~~~~~~~----e~~s~~~f~~---~--~~~~i--~~i~~~~~~~IlvGGt~~y-~~--~ll~~~~~~-----p~~d~  154 (298)
                      .++.......    ..|. .+|.+   .  .....  .+....+.-.|+++|.+.+ ..  .-+..+.|+     |+.+.
T Consensus        81 ~~l~~l~~~~~g~~~~Y~-h~f~~a~~~~~~~gtft~~e~i~~p~dvIivEGLh~~~~~~~~~lr~~~DlkIfVdp~~dl  159 (290)
T PRK15453         81 QLFREYGETGTGKTRKYL-HTDDEAVPYNQVPGTFTPWEPLPEGTDLLFYEGLHGGVVTDQVDVAQHVDLLIGVVPIVNL  159 (290)
T ss_pred             HHHHHHhcCCCcceeecc-ccccccccCCCCCCccCCceEecCCCcEEEEeccccccccccHHHHHhCCeeEeeCCcHhH
Confidence            2222211100    0010 00100   0  00000  0112234556777887643 21  123333343     67778


Q ss_pred             HHHHHHHHHHHhhCHH---HHHHHHhcCCccccC
Q psy8556         155 KLRTKFNIDINKYGIS---FLYDKLKLLDPVTAN  185 (298)
Q Consensus       155 ~lr~~l~~~~~~~g~~---~l~~~L~~~Dp~~a~  185 (298)
                      ++.+++.|+..++|+.   .+.+.+++. |.+..
T Consensus       160 r~irRI~RD~~ERGrs~EsVi~qilrrm-Pdy~~  192 (290)
T PRK15453        160 EWIQKIHRDTSERGYSREAVMDTILRRM-PDYIN  192 (290)
T ss_pred             HHHHHHHhhhHhhCCCHHHHHHHHHHhC-ChHhh
Confidence            8888999999999975   555666654 65544

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=98.83  E-value=4.8e-09  Score=100.05  Aligned_cols=146  Identities=15%  Similarity=0.164  Sum_probs=81.3

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHH
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIE   88 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e   88 (298)
                      ..++.|+++...++++++     .-.+|++++|+||||||||||++.|++...     +++|+| +.|.++....|....
T Consensus         8 ~l~~~~~~~~~~l~~vsl-----~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~-----p~~G~I~~~g~~i~~~~~~~r~   77 (356)
T PRK11650          8 AVRKSYDGKTQVIKGIDL-----DVADGEFIVLVGPSGCGKSTLLRMVAGLER-----ITSGEIWIGGRVVNELEPADRD   77 (356)
T ss_pred             eEEEEeCCCCEEEeeeeE-----EEcCCCEEEEECCCCCcHHHHHHHHHCCCC-----CCceEEEECCEECCCCCHHHCC
Confidence            456777544455555555     224577999999999999999999999877     899999 678777543332222


Q ss_pred             Hcccccc--cccccCcCccchHH---------HHHHHHHHhhHH--H--hhcCCceEEEchhH---HHHHHHHcc----C
Q psy8556          89 REITPHH--LIDIIEPTKSYSVI---------QFCEDALFSIKN--I--LKKKKLPLLVGGTM---LYFKALRDG----I  146 (298)
Q Consensus        89 ~~~v~~~--l~~~~~~~e~~s~~---------~f~~~~~~~i~~--i--~~~~~~~IlvGGt~---~y~~~ll~~----~  146 (298)
                      ...+++.  ++...+..+++...         +....+.+.++.  +  .....+--++||..   ...++++..    +
T Consensus        78 ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llL  157 (356)
T PRK11650         78 IAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFL  157 (356)
T ss_pred             EEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            2223332  11112222222111         011111111111  0  01112234788876   466888865    3


Q ss_pred             CCCCC--CCHHHHHHHHHHHH
Q psy8556         147 NKLPP--ANLKLRTKFNIDIN  165 (298)
Q Consensus       147 ~~~p~--~d~~lr~~l~~~~~  165 (298)
                      .|.|.  .|...+..+.+.+.
T Consensus       158 LDEP~s~LD~~~r~~l~~~l~  178 (356)
T PRK11650        158 FDEPLSNLDAKLRVQMRLEIQ  178 (356)
T ss_pred             EeCCcccCCHHHHHHHHHHHH
Confidence            45564  37777777766554

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=98.83  E-value=1.7e-08  Score=90.65  Aligned_cols=61  Identities=23%  Similarity=0.280  Sum_probs=45.2

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      .+..|+.+...+.++++     .-.+|++++|+||||||||||++.|++.+.     +++|+| +.|.++..
T Consensus         7 l~~~~~~~~~il~~vs~-----~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~   68 (243)
T TIGR02315         7 LSKVYPNGKQALKNINL-----NINPGEFVAIIGPSGAGKSTLLRCINRLVE-----PSSGSILLEGTDITK   68 (243)
T ss_pred             eeeecCCCcceeecceE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCccEEEECCEEhhh
Confidence            45667633445666655     224577899999999999999999998776     789998 57766543

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=98.82  E-value=3.7e-09  Score=93.07  Aligned_cols=38  Identities=32%  Similarity=0.435  Sum_probs=32.8

Q ss_pred             ccCCCeEEEEECCCchhHHHHHHHHHhhCC---CeEeecCC
Q psy8556          33 LLFRKTKVAILGPTASGKSSVALKISEYIP---CEIISIDS   70 (298)
Q Consensus        33 ~~~kg~iI~I~GpTGSGKSTLa~~La~~l~---~~iis~Ds   70 (298)
                      |+.++.+|+|+|+||||||||++.|++.++   ..+++.|.
T Consensus         2 ~~~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~   42 (209)
T PRK05480          2 MMKKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDS   42 (209)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCc
Confidence            567899999999999999999999999984   34577776

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=98.82  E-value=1.6e-08  Score=86.91  Aligned_cols=59  Identities=25%  Similarity=0.260  Sum_probs=42.7

Q ss_pred             cccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          12 TETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      +..|+. ...+.++++     .-++|++++|+||||||||||++.|++.+.     +++|+| +.|.++..
T Consensus         7 ~~~~~~-~~~l~~i~~-----~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~   66 (178)
T cd03229           7 SKRYGQ-KTVLNDVSL-----NIEAGEIVALLGPSGSGKSTLLRCIAGLEE-----PDSGSILIDGEDLTD   66 (178)
T ss_pred             EEEECC-eEEEeeeeE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEccc
Confidence            445543 234444443     335678999999999999999999998876     789998 57766643

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=98.81  E-value=2.7e-08  Score=90.10  Aligned_cols=131  Identities=15%  Similarity=0.179  Sum_probs=75.9

Q ss_pred             hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe-ccccCCCCCCCHHHHccccccccc
Q psy8556          20 QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY-CDMDIGTNKPSIIEREITPHHLID   98 (298)
Q Consensus        20 ~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy-~g~~i~t~kp~~~e~~~v~~~l~~   98 (298)
                      ..+.|+++     .-++|++++|+||||||||||++.+.+.+.     +.+|.|+ .|.++...+ .....+.+|++.  
T Consensus        18 ~vl~~i~l-----~v~~G~~~~iiGPNGaGKSTLlK~iLGll~-----p~~G~i~~~g~~~~~~~-~~~~IgYVPQ~~--   84 (254)
T COG1121          18 PVLEDISL-----SVEKGEITALIGPNGAGKSTLLKAILGLLK-----PSSGEIKIFGKPVRKRR-KRLRIGYVPQKS--   84 (254)
T ss_pred             eeeeccEE-----EEcCCcEEEEECCCCCCHHHHHHHHhCCCc-----CCcceEEEccccccccc-cCCeEEEcCccc--
Confidence            46777666     123456899999999999999999998776     7888884 554433221 123456677754  


Q ss_pred             ccCcCccchHHHHHHHH---------------HHhhHHHhh--------cCCceEEEchhH---HHHHHHHcc----CCC
Q psy8556          99 IIEPTKSYSVIQFCEDA---------------LFSIKNILK--------KKKLPLLVGGTM---LYFKALRDG----INK  148 (298)
Q Consensus        99 ~~~~~e~~s~~~f~~~~---------------~~~i~~i~~--------~~~~~IlvGGt~---~y~~~ll~~----~~~  148 (298)
                      .++..-..++.+++...               .+.+.+.++        ...+--++||-.   +..+||..+    +.|
T Consensus        85 ~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLD  164 (254)
T COG1121          85 SVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLD  164 (254)
T ss_pred             ccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEec
Confidence            12222223333333221               112222221        223335789976   677888866    446


Q ss_pred             CCC--CCHHHHHHHHHH
Q psy8556         149 LPP--ANLKLRTKFNID  163 (298)
Q Consensus       149 ~p~--~d~~lr~~l~~~  163 (298)
                      .|.  .|+.-+..+-+.
T Consensus       165 EP~~gvD~~~~~~i~~l  181 (254)
T COG1121         165 EPFTGVDVAGQKEIYDL  181 (254)
T ss_pred             CCcccCCHHHHHHHHHH
Confidence            664  466555554443

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=98.80  E-value=1.8e-08  Score=88.96  Aligned_cols=60  Identities=13%  Similarity=0.163  Sum_probs=45.1

Q ss_pred             hcccCchh-hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQ-RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~-~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|+++ ...+.++++     .-.+|++++|+||||||||||++.|++.+.     +++|+| +.|.++.
T Consensus         7 l~~~~~~~~~~il~~isl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~   68 (216)
T TIGR00960         7 VSKAYPGGHQPALDNLNF-----HITKGEMVFLVGHSGAGKSTFLKLILGIEK-----PTRGKIRFNGQDLT   68 (216)
T ss_pred             EEEEecCCCeeEEEeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEehh
Confidence            45667654 345666655     224577899999999999999999998876     789998 5776654

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=98.80  E-value=2.2e-08  Score=88.47  Aligned_cols=61  Identities=25%  Similarity=0.151  Sum_probs=45.9

Q ss_pred             hcccCchh---hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          11 DTETDPQQ---RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        11 ~~~~~~~~---~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      .+..|+++   ...+.++++     .-.+|++++|+||||||||||++.|++.++     +++|+| +.|.++..
T Consensus         6 l~~~~~~~~~~~~il~~~s~-----~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~~~~   70 (218)
T cd03255           6 LSKTYGGGGEKVQALKGVSL-----SIEKGEFVAIVGPSGSGKSTLLNILGGLDR-----PTSGEVRVDGTDISK   70 (218)
T ss_pred             eEEEecCCCcceeEEeeeEE-----EEcCCCEEEEEcCCCCCHHHHHHHHhCCcC-----CCceeEEECCEehhh
Confidence            45677653   345666555     224577899999999999999999998876     789998 67776653

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=98.80  E-value=8.1e-09  Score=98.40  Aligned_cols=60  Identities=22%  Similarity=0.261  Sum_probs=45.7

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      .++.|++ ...++++++     .-.+|++++|+||||||||||++.|++.+.     +++|+| +.|.++..
T Consensus         8 l~~~~~~-~~~l~~isl-----~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~-----p~~G~I~i~g~~i~~   68 (353)
T PRK10851          8 IKKSFGR-TQVLNDISL-----DIPSGQMVALLGPSGSGKTTLLRIIAGLEH-----QTSGHIRFHGTDVSR   68 (353)
T ss_pred             EEEEeCC-eEEEEEeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCC
Confidence            4566764 345555555     223577999999999999999999998876     899999 67877754

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=98.79  E-value=3.5e-08  Score=86.91  Aligned_cols=61  Identities=13%  Similarity=0.167  Sum_probs=44.9

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      .+..|+++...+.++++     .-.+|++++|+||||||||||++.|++.+.     +++|+| +.|.++..
T Consensus         7 l~~~~~~~~~il~~is~-----~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~~~~   68 (214)
T TIGR02673         7 VSKAYPGGVAALHDVSL-----HIRKGEFLFLTGPSGAGKTTLLKLLYGALT-----PSRGQVRIAGEDVNR   68 (214)
T ss_pred             eeEEeCCCceeecceeE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEccc
Confidence            34566533456666655     224567899999999999999999998876     789998 57766643

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.78  E-value=9.5e-09  Score=90.27  Aligned_cols=60  Identities=27%  Similarity=0.299  Sum_probs=49.3

Q ss_pred             chhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCC
Q psy8556          16 PQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPS   85 (298)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~   85 (298)
                      -+|+.+++++++     ...+|++.+|+||||+|||||++.|++.+.     +++|.+ |.|.+..+..|.
T Consensus        11 ~~Gr~ll~~vsl-----~~~pGev~ailGPNGAGKSTlLk~LsGel~-----p~~G~v~~~g~~l~~~~~~   71 (259)
T COG4559          11 LAGRRLLDGVSL-----DLRPGEVLAILGPNGAGKSTLLKALSGELS-----PDSGEVTLNGVPLNSWPPE   71 (259)
T ss_pred             eecceeccCcce-----eccCCcEEEEECCCCccHHHHHHHhhCccC-----CCCCeEeeCCcChhhCCHH
Confidence            678888888887     234566899999999999999999998887     899999 888887655543

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=98.77  E-value=3.8e-08  Score=84.14  Aligned_cols=58  Identities=19%  Similarity=0.242  Sum_probs=42.1

Q ss_pred             cccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          12 TETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      +..|+.. .++.+++.     .-.+|++++|+||||||||||++.|++.++     +++|+| +.|.++.
T Consensus         7 ~~~~~~~-~~l~~~~~-----~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~g~~~~   65 (173)
T cd03230           7 SKRYGKK-TALDDISL-----TVEKGEIYGLLGPNGAGKTTLIKIILGLLK-----PDSGEIKVLGKDIK   65 (173)
T ss_pred             EEEECCe-eeeeeeEE-----EEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEEcc
Confidence            4455432 34444444     234577899999999999999999998876     788998 5676654

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=98.77  E-value=3.6e-08  Score=93.97  Aligned_cols=146  Identities=16%  Similarity=0.154  Sum_probs=81.7

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHH
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIE   88 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e   88 (298)
                      ..++.|+. ...+.++++     .-++|++++|+||||||||||++.|++...     +|+|+| +.|.++....|....
T Consensus         9 ~l~~~~~~-~~~l~~vs~-----~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~~~~~~~~~r~   77 (353)
T TIGR03265         9 NIRKRFGA-FTALKDISL-----SVKKGEFVCLLGPSGCGKTTLLRIIAGLER-----QTAGTIYQGGRDITRLPPQKRD   77 (353)
T ss_pred             EEEEEeCC-eEEEEeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHHCCCC-----CCceEEEECCEECCCCCHHHCC
Confidence            34667764 334455444     224577999999999999999999998876     899999 677777543332222


Q ss_pred             Hcccccc--cccccCcCccchHHHHH-----HHHHHhhHHHhh--------cCCceEEEchhH---HHHHHHHcc----C
Q psy8556          89 REITPHH--LIDIIEPTKSYSVIQFC-----EDALFSIKNILK--------KKKLPLLVGGTM---LYFKALRDG----I  146 (298)
Q Consensus        89 ~~~v~~~--l~~~~~~~e~~s~~~f~-----~~~~~~i~~i~~--------~~~~~IlvGGt~---~y~~~ll~~----~  146 (298)
                      ...++++  ++..++..+++......     ....+.+.++.+        ...+--++||..   ...++++.+    +
T Consensus        78 ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llL  157 (353)
T TIGR03265        78 YGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLL  157 (353)
T ss_pred             EEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            2333332  11112222322211000     001111222221        122234788876   466888865    4


Q ss_pred             CCCCC--CCHHHHHHHHHHHHh
Q psy8556         147 NKLPP--ANLKLRTKFNIDINK  166 (298)
Q Consensus       147 ~~~p~--~d~~lr~~l~~~~~~  166 (298)
                      .|.|.  .|...|+.+...+.+
T Consensus       158 LDEP~s~LD~~~r~~l~~~L~~  179 (353)
T TIGR03265       158 LDEPLSALDARVREHLRTEIRQ  179 (353)
T ss_pred             EcCCcccCCHHHHHHHHHHHHH
Confidence            46664  478888877766543

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK14737 gmk guanylate kinase; Provisional

Probab=98.76  E-value=6.1e-09  Score=90.58  Aligned_cols=88  Identities=16%  Similarity=0.138  Sum_probs=63.0

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccchH-------
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSV-------  108 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~-------  108 (298)
                      +|.+|+|+||||||||||++.|....+.         ++.-.+.+|.+|.+.|..++.||+++.-.+......       
T Consensus         3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~---------~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~   73 (186)
T PRK14737          3 SPKLFIISSVAGGGKSTIIQALLEEHPD---------FLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWA   73 (186)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhcCCc---------cccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEE
Confidence            5789999999999999999999876531         233357789999999999999988765433221111       


Q ss_pred             ---HHHHHHHHHhhHHHhhcCCceEEE
Q psy8556         109 ---IQFCEDALFSIKNILKKKKLPLLV  132 (298)
Q Consensus       109 ---~~f~~~~~~~i~~i~~~~~~~Ilv  132 (298)
                         +.++....+.+...+..|+.+|+.
T Consensus        74 ~~~g~~YGt~~~~i~~~~~~g~~~i~d  100 (186)
T PRK14737         74 EVHDNYYGTPKAFIEDAFKEGRSAIMD  100 (186)
T ss_pred             EECCeeecCcHHHHHHHHHcCCeEEEE
Confidence               223333455677888889998875

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=98.76  E-value=7.5e-08  Score=84.65  Aligned_cols=59  Identities=19%  Similarity=0.179  Sum_probs=44.0

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|+. ...+.++++     .-.+|++++|+||||||||||++.|++.++     +++|+| +.|.++.
T Consensus         6 l~~~~~~-~~~l~~~s~-----~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~   65 (213)
T cd03262           6 LHKSFGD-FHVLKGIDL-----TVKKGEVVVIIGPSGSGKSTLLRCINLLEE-----PDSGTIIIDGLKLT   65 (213)
T ss_pred             EEEEECC-eEeecCceE-----EECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECC
Confidence            4556654 345555554     224678999999999999999999998876     789998 5776664

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=98.76  E-value=5e-08  Score=87.14  Aligned_cols=61  Identities=16%  Similarity=0.091  Sum_probs=45.5

Q ss_pred             hcccCchhh---hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          11 DTETDPQQR---QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        11 ~~~~~~~~~---~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      .+..|++..   ..+.++++     .-.+|++++|+||||||||||++.|++.++     +++|.| +.|.++..
T Consensus         7 l~~~~~~~~~~~~il~~~s~-----~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~   71 (233)
T cd03258           7 VSKVFGDTGGKVTALKDVSL-----SVPKGEIFGIIGRSGAGKSTLIRCINGLER-----PTSGSVLVDGTDLTL   71 (233)
T ss_pred             ceEEccCCCCceeeeecceE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEccc
Confidence            456676431   45555554     234577899999999999999999998876     788998 57777654

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=98.75  E-value=2.8e-08  Score=94.68  Aligned_cols=146  Identities=15%  Similarity=0.139  Sum_probs=82.0

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHH
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIE   88 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e   88 (298)
                      ..++.|++ ...+.++++     .-.+|++++|+||||||||||++.|++...     +++|+| +.|.++....+....
T Consensus        11 ~l~~~~~~-~~~l~~isl-----~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~-----p~~G~I~~~g~~i~~~~~~~r~   79 (351)
T PRK11432         11 NITKRFGS-NTVIDNLNL-----TIKQGTMVTLLGPSGCGKTTVLRLVAGLEK-----PTEGQIFIDGEDVTHRSIQQRD   79 (351)
T ss_pred             eEEEEECC-eEEEeeeEE-----EEcCCCEEEEECCCCCcHHHHHHHHHCCCC-----CCceEEEECCEECCCCCHHHCC
Confidence            35667754 334455444     224577999999999999999999998887     899999 677777543222222


Q ss_pred             Hcccccc--cccccCcCccchHHHH-----HHHHHHhhHHHh--------hcCCceEEEchhH---HHHHHHHcc----C
Q psy8556          89 REITPHH--LIDIIEPTKSYSVIQF-----CEDALFSIKNIL--------KKKKLPLLVGGTM---LYFKALRDG----I  146 (298)
Q Consensus        89 ~~~v~~~--l~~~~~~~e~~s~~~f-----~~~~~~~i~~i~--------~~~~~~IlvGGt~---~y~~~ll~~----~  146 (298)
                      ...+++.  ++..++..+++...--     .....+.+.++.        ....+--++||..   ...++++..    +
T Consensus        80 ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLL  159 (351)
T PRK11432         80 ICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLL  159 (351)
T ss_pred             EEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence            2233332  1111222233221100     001111112211        1223335788877   466888865    4


Q ss_pred             CCCCCC--CHHHHHHHHHHHHh
Q psy8556         147 NKLPPA--NLKLRTKFNIDINK  166 (298)
Q Consensus       147 ~~~p~~--d~~lr~~l~~~~~~  166 (298)
                      .|.|.+  |+..|..+.+.+.+
T Consensus       160 LDEP~s~LD~~~r~~l~~~l~~  181 (351)
T PRK11432        160 FDEPLSNLDANLRRSMREKIRE  181 (351)
T ss_pred             EcCCcccCCHHHHHHHHHHHHH
Confidence            466654  88888887766543

>PLN02348 phosphoribulokinase

Probab=98.75  E-value=3.7e-09  Score=101.06  Aligned_cols=146  Identities=11%  Similarity=0.141  Sum_probs=74.1

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCC--------------------eEeecCCceEeccc-----cCCCCCCCHHHH
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPC--------------------EIISIDSALVYCDM-----DIGTNKPSIIER   89 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~--------------------~iis~Ds~qvy~g~-----~i~t~kp~~~e~   89 (298)
                      +++.+|+|.|++|||||||++.|+..++.                    .+|+.|....+.-.     .+....|...+.
T Consensus        47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~~r~~~g~t~ldP~a~df  126 (395)
T PLN02348         47 DGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNF  126 (395)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChhhHhhcCCccCCcccccH
Confidence            56789999999999999999999998852                    36777764332100     111112222222


Q ss_pred             cccccccccccCcCc-cchHHHHHHHHHHhhHHHhhcCCceEEEchhHHHHHHHHccCCCC-----CCCCHHHHHHHHHH
Q psy8556          90 EITPHHLIDIIEPTK-SYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKL-----PPANLKLRTKFNID  163 (298)
Q Consensus        90 ~~v~~~l~~~~~~~e-~~s~~~f~~~~~~~i~~i~~~~~~~IlvGGt~~y~~~ll~~~~~~-----p~~d~~lr~~l~~~  163 (298)
                      ..+.+++..+..... .....+|........ +... +...||++|.+.+....+..+.++     ++.+..+.+++.|+
T Consensus       127 Dll~~~L~~Lk~G~~I~~PiYDh~tg~~~~~-e~I~-p~~VVIVEGlh~L~~e~lr~l~D~~IyVd~~~dvrl~RRI~RD  204 (395)
T PLN02348        127 DLMYEQVKALKEGKAVEKPIYNHVTGLLDPP-ELIE-PPKILVIEGLHPMYDERVRDLLDFSIYLDISDDVKFAWKIQRD  204 (395)
T ss_pred             HHHHHHHHHHHCCCcEEeeccccCCCCcCCc-EEcC-CCcEEEEechhhccCccccccCcEEEEEECCHHHHHHHHHHhh
Confidence            222222222111110 001111110000000 1112 234567788876554444443332     33445567888898


Q ss_pred             HHhhCHH--HHHHHHhcCCcc
Q psy8556         164 INKYGIS--FLYDKLKLLDPV  182 (298)
Q Consensus       164 ~~~~g~~--~l~~~L~~~Dp~  182 (298)
                      +.++|..  ...+.+..+.|.
T Consensus       205 ~~eRG~S~EeV~~~i~ar~pd  225 (395)
T PLN02348        205 MAERGHSLESIKASIEARKPD  225 (395)
T ss_pred             HhhcCCCHHHHHHHHHhcCcc
Confidence            8877743  555556666665

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.75  E-value=3e-08  Score=87.17  Aligned_cols=61  Identities=23%  Similarity=0.233  Sum_probs=45.1

Q ss_pred             hhcccCchh-hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          10 RDTETDPQQ-RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        10 ~~~~~~~~~-~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      ..+..|+++ ..++.++++     .-.+|++++|+||||||||||++.|++.+.     +++|+| +.|.++.
T Consensus         4 ~l~~~~~~~~~~il~~vs~-----~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~   66 (211)
T cd03225           4 NLSFSYPDGARPALDDISL-----TIKKGEFVLIVGPNGSGKSTLLRLLNGLLG-----PTSGEVLVDGKDLT   66 (211)
T ss_pred             eEEEecCCCCeeeecceEE-----EEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEEcc
Confidence            346667642 345566555     223577899999999999999999998876     789998 5776654

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=98.74  E-value=8.6e-08  Score=85.77  Aligned_cols=60  Identities=28%  Similarity=0.243  Sum_probs=44.4

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      .+..|++ ...+.++++     .-.+|++++|+||||||||||++.|++.+.     +++|.| +.|.++..
T Consensus         6 l~~~~~~-~~~l~~vs~-----~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~   66 (235)
T cd03261           6 LTKSFGG-RTVLKGVDL-----DVRRGEILAIIGPSGSGKSTLLRLIVGLLR-----PDSGEVLIDGEDISG   66 (235)
T ss_pred             EEEEECC-EEEEeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEccc
Confidence            3556653 345566555     224577899999999999999999998876     788998 57766643

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=98.74  E-value=4.3e-08  Score=83.65  Aligned_cols=60  Identities=23%  Similarity=0.260  Sum_probs=44.1

Q ss_pred             hcccCchhh-hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQR-QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~-~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|++++ ..+.++++     .-.+|++++|+||||||||||++.|++.++     +++|+| +.|.++.
T Consensus         6 l~~~~~~~~~~~l~~i~~-----~i~~G~~~~l~G~nGsGKstLl~~i~G~~~-----~~~G~i~~~g~~~~   67 (171)
T cd03228           6 VSFSYPGRPKPVLKDVSL-----TIKPGEKVAIVGPSGSGKSTLLKLLLRLYD-----PTSGEILIDGVDLR   67 (171)
T ss_pred             EEEEcCCCCcccccceEE-----EEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCCEEEECCEEhh
Confidence            355666542 45555554     224577899999999999999999999877     789998 5666553

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=98.74  E-value=5.2e-08  Score=83.89  Aligned_cols=124  Identities=20%  Similarity=0.202  Sum_probs=75.1

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHHHcccc--cccccccCcCcc------
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIEREITP--HHLIDIIEPTKS------  105 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e~~~v~--~~l~~~~~~~e~------  105 (298)
                      ..+++++|+||||||||||++.+|+..-     +.+|.| ..|.+.+...|...-...+.  +.++..+++.++      
T Consensus        23 ~~ge~vAi~GpSGaGKSTLLnLIAGF~~-----P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~   97 (231)
T COG3840          23 PAGEIVAILGPSGAGKSTLLNLIAGFET-----PASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLS   97 (231)
T ss_pred             cCCcEEEEECCCCccHHHHHHHHHhccC-----CCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCC
Confidence            4578999999999999999999998876     889998 58888876666544333332  233333433332      


Q ss_pred             ----chHHHHHH--HHHH--hhHHHhhcCCceEEEchhH---HHHHHHHcc----CCCCC--CCCHHHHHHHHHHH
Q psy8556         106 ----YSVIQFCE--DALF--SIKNILKKKKLPLLVGGTM---LYFKALRDG----INKLP--PANLKLRTKFNIDI  164 (298)
Q Consensus       106 ----~s~~~f~~--~~~~--~i~~i~~~~~~~IlvGGt~---~y~~~ll~~----~~~~p--~~d~~lr~~l~~~~  164 (298)
                          +++.+-.+  .+..  -+....+ --+.-++||-.   -..+++++.    +.|.|  .-|+.+|..+...+
T Consensus        98 P~LkL~a~~r~~v~~aa~~vGl~~~~~-RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv  172 (231)
T COG3840          98 PGLKLNAEQREKVEAAAAQVGLAGFLK-RLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALV  172 (231)
T ss_pred             cccccCHHHHHHHHHHHHHhChhhHhh-hCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHH
Confidence                22222111  1111  1111111 12336888866   467888876    33555  34898988876544

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=98.74  E-value=4.1e-08  Score=93.14  Aligned_cols=61  Identities=15%  Similarity=0.206  Sum_probs=46.1

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      ..++.|++. ..++++++     .-.+|++++|+||||||||||++.|++.+.     +++|+| +.|.++..
T Consensus        46 nl~k~y~~~-~~l~~is~-----~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~-----p~~G~i~i~G~~~~~  107 (340)
T PRK13536         46 GVSKSYGDK-AVVNGLSF-----TVASGECFGLLGPNGAGKSTIARMILGMTS-----PDAGKITVLGVPVPA  107 (340)
T ss_pred             EEEEEECCE-EEEeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCceEEEECCEECCc
Confidence            356667542 45556555     224577999999999999999999998876     899999 58877653

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=98.73  E-value=5.4e-08  Score=86.21  Aligned_cols=59  Identities=14%  Similarity=0.140  Sum_probs=43.7

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .++.|++ ..+++++++     .-.+|++++|+||||||||||++.|++.+.     +++|.| +.|.++.
T Consensus         6 ~~~~~~~-~~il~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~   65 (220)
T cd03265           6 LVKKYGD-FEAVRGVSF-----RVRRGEIFGLLGPNGAGKTTTIKMLTTLLK-----PTSGRATVAGHDVV   65 (220)
T ss_pred             EEEEECC-EEeeeceeE-----EECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEecC
Confidence            4556654 345555554     224577899999999999999999998776     889998 5676654

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PLN02318 phosphoribulokinase/uridine kinase

Probab=98.73  E-value=1e-08  Score=102.34  Aligned_cols=145  Identities=16%  Similarity=0.256  Sum_probs=76.5

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCC-CeEeecCCceEec-cccCCCCCCCHHHHcccccccccccCcCc-cchHHHHH
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIP-CEIISIDSALVYC-DMDIGTNKPSIIEREITPHHLIDIIEPTK-SYSVIQFC  112 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~-~~iis~Ds~qvy~-g~~i~t~kp~~~e~~~v~~~l~~~~~~~e-~~s~~~f~  112 (298)
                      ...+|+|.||||||||||++.|++.++ ..+|+.|...-.. ..+.....|...+...+.+++..+..... .+...+|.
T Consensus        64 ~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy~~~~~~i~~nfD~P~a~D~d~L~enL~~Lr~GksV~iPiYDf~  143 (656)
T PLN02318         64 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNYNDSSRIIDGNFDDPRLTDYDTLLDNIHDLKAGKSVQVPIYDFK  143 (656)
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcceecchhhhCccCCChhhcchhHHHHHHHHHhCCCceecCccccc
Confidence            457999999999999999999999885 4678888732110 01111112222222222222222111111 12222332


Q ss_pred             HHHHHhhHHHhhcCCceEEEchhHHHHHHHHccCCCC-----CCCCHHHHHHHHHHHHhhCHH---HHHHHHhcCCc
Q psy8556         113 EDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKL-----PPANLKLRTKFNIDINKYGIS---FLYDKLKLLDP  181 (298)
Q Consensus       113 ~~~~~~i~~i~~~~~~~IlvGGt~~y~~~ll~~~~~~-----p~~d~~lr~~l~~~~~~~g~~---~l~~~L~~~Dp  181 (298)
                      ......-..+......+||++|...+...+. ++.|+     .+.+..+.+|+.++..++|..   .+.++...+-|
T Consensus       144 t~~r~~~~~i~v~p~~VVIVEGIyaL~~~Lr-~LlDlkIFVDtdvDirL~RRI~RD~~eRGrs~EsVi~q~~~~VkP  219 (656)
T PLN02318        144 SSSRVGYRTLEVPSSRIVIIEGIYALSEKLR-PLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVYP  219 (656)
T ss_pred             cCcccCCceeecCCCcEEEEechhhccHhHH-hhCCEEEEEcCCccHHHHHHHHHHHHHhCCCHHHHHHHHHHhhcc
Confidence            2111000011122344678889888765443 33343     456788889999998888754   34444444444

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=98.73  E-value=2.6e-08  Score=88.13  Aligned_cols=62  Identities=16%  Similarity=0.122  Sum_probs=46.3

Q ss_pred             hcccCchh---hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCC
Q psy8556          11 DTETDPQQ---RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTN   82 (298)
Q Consensus        11 ~~~~~~~~---~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~   82 (298)
                      .+..|+++   ..++.++++     .-.+|++++|+||||||||||++.|++.+.     +++|+| +.|.++.+.
T Consensus         7 v~~~~~~~~~~~~~l~~isl-----~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~~   72 (221)
T TIGR02211         7 LGKRYQEGKLDTRVLKGVSL-----SIGKGEIVAIVGSSGSGKSTLLHLLGGLDN-----PTSGEVLFNGQSLSKL   72 (221)
T ss_pred             eeEEccCCCcceEeEeeeEE-----EEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEEhhhc
Confidence            46677653   245555554     224577999999999999999999998876     889999 577766543

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=98.73  E-value=9.8e-08  Score=88.93  Aligned_cols=51  Identities=14%  Similarity=0.201  Sum_probs=40.2

Q ss_pred             hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          20 QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        20 ~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      ..++++++     .-++|++++|+||||||||||++.|++.+.     +++|+| +.|.++.
T Consensus         7 ~~l~~vs~-----~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~   58 (302)
T TIGR01188         7 KAVDGVNF-----KVREGEVFGFLGPNGAGKTTTIRMLTTLLR-----PTSGTARVAGYDVV   58 (302)
T ss_pred             eEEeeeeE-----EEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEcc
Confidence            44555554     224577999999999999999999998876     899999 5777664

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=98.72  E-value=6.6e-08  Score=82.67  Aligned_cols=60  Identities=25%  Similarity=0.248  Sum_probs=43.8

Q ss_pred             hcccCchhh-hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQR-QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~-~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|++++ ..+.+++.     .-++|++++|+||||||||||++.|++.+.     +++|+| +.|.++.
T Consensus         6 l~~~~~~~~~~~l~~~~~-----~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~g~~~~   67 (173)
T cd03246           6 VSFRYPGAEPPVLRNVSF-----SIEPGESLAIIGPSGSGKSTLARLILGLLR-----PTSGRVRLDGADIS   67 (173)
T ss_pred             EEEEcCCCCCcceeeeEE-----EECCCCEEEEECCCCCCHHHHHHHHHhccC-----CCCCeEEECCEEcc
Confidence            355666432 34555444     224577899999999999999999998876     889998 5666654

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=98.72  E-value=3.7e-09  Score=87.41  Aligned_cols=87  Identities=17%  Similarity=0.178  Sum_probs=58.9

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccchHHH--------
Q psy8556          39 KVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQ--------  110 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~~~--------  110 (298)
                      +++|+||||||||||++.|++.++...        ..-...+|.+|...+..+..|++++...+...+..+.        
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~~~~~~--------~~~v~~tTr~p~~~e~~g~~~~~v~~~~~~~~~~~~~f~e~~~~~   72 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEEFDPNF--------GFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEWAEFH   72 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhcCCccc--------eecccccccCCCCCccCCceeEEeCHHHHHHHHHcCCeEEEEEEc
Confidence            478999999999999999998875221        1123346778887788888888877544332222222        


Q ss_pred             --HHHHHHHhhHHHhhcCCceEEEc
Q psy8556         111 --FCEDALFSIKNILKKKKLPLLVG  133 (298)
Q Consensus       111 --f~~~~~~~i~~i~~~~~~~IlvG  133 (298)
                        ++......+.++...|++||+..
T Consensus        73 ~~~yg~~~~~i~~~~~~g~~~il~~   97 (137)
T cd00071          73 GNYYGTSKAAVEEALAEGKIVILEI   97 (137)
T ss_pred             CEEecCcHHHHHHHHhCCCeEEEEe
Confidence              22234566778888999888754

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=98.72  E-value=1.1e-08  Score=94.79  Aligned_cols=92  Identities=17%  Similarity=0.190  Sum_probs=62.6

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCe-EeecCCce------------------EeccccCCCCCCCHHHHcccccc
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCE-IISIDSAL------------------VYCDMDIGTNKPSIIEREITPHH   95 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~-iis~Ds~q------------------vy~g~~i~t~kp~~~e~~~v~~~   95 (298)
                      ++|.+|+|.|+|||||||++..||..++.. +|+.|+.+                  .|..+.+.++.|+..+     |+
T Consensus        90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~-----~~  164 (301)
T PRK04220         90 KEPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEP-----PV  164 (301)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCch-----hh
Confidence            357899999999999999999999999875 78888766                  5666666555555433     45


Q ss_pred             cccccCcCccchHHHHHHHHHHhhHHHhhcCCceEEEchhHH
Q psy8556          96 LIDIIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTML  137 (298)
Q Consensus        96 l~~~~~~~e~~s~~~f~~~~~~~i~~i~~~~~~~IlvGGt~~  137 (298)
                      +.++..+.+.++.+     +...+.....+|.. ++++|.++
T Consensus       165 l~g~~~~~~~v~~g-----i~~~I~~~~~~g~s-~IiEGvhl  200 (301)
T PRK04220        165 IYGFERHVEPVSVG-----VEAVIERALKEGIS-VIIEGVHI  200 (301)
T ss_pred             hhhHHHHHHHHHHH-----HHHHHHHHHHhCCc-EEEecCCC
Confidence            55555444443332     34456666666654 55566665

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.72  E-value=1.4e-08  Score=86.28  Aligned_cols=58  Identities=24%  Similarity=0.335  Sum_probs=45.9

Q ss_pred             hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCH
Q psy8556          19 RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSI   86 (298)
Q Consensus        19 ~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~   86 (298)
                      .-+++++++     .-.+|+.++|+||||||||||.+.+|.+     ||+|+|.+ |+|.++.+.+|..
T Consensus        16 a~il~~isl-----~v~~Ge~iaitGPSG~GKStllk~va~L-----isp~~G~l~f~Ge~vs~~~pea   74 (223)
T COG4619          16 AKILNNISL-----SVRAGEFIAITGPSGCGKSTLLKIVASL-----ISPTSGTLLFEGEDVSTLKPEA   74 (223)
T ss_pred             Ceeecceee-----eecCCceEEEeCCCCccHHHHHHHHHhc-----cCCCCceEEEcCccccccChHH
Confidence            355666665     2345678999999999999999999754     55999999 6999998877654

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=98.71  E-value=7.8e-08  Score=85.75  Aligned_cols=60  Identities=20%  Similarity=0.257  Sum_probs=44.6

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      .+..|++ ...+.++++     .-.+|++++|+||||||||||++.|++.+.     +++|+| +.|.++..
T Consensus         6 l~~~~~~-~~~l~~vs~-----~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~   66 (232)
T cd03218           6 LSKRYGK-RKVVNGVSL-----SVKQGEIVGLLGPNGAGKTTTFYMIVGLVK-----PDSGKILLDGQDITK   66 (232)
T ss_pred             EEEEeCC-EEeecccee-----EecCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEeccc
Confidence            4566754 345556554     224577899999999999999999998876     889998 57766543

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=98.71  E-value=4.3e-08  Score=94.00  Aligned_cols=61  Identities=18%  Similarity=0.202  Sum_probs=45.4

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      ..++.|++ ...++++++     .-.+|++++|+||||||||||++.|++.+.     +++|+| +.|.++..
T Consensus         8 ~l~~~~~~-~~vl~~vsl-----~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~-----p~~G~I~~~g~~i~~   69 (369)
T PRK11000          8 NVTKAYGD-VVISKDINL-----DIHEGEFVVFVGPSGCGKSTLLRMIAGLED-----ITSGDLFIGEKRMND   69 (369)
T ss_pred             EEEEEeCC-eEEEeeeEE-----EEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEECCC
Confidence            34566754 345555555     223577899999999999999999998876     889998 57777653

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=98.70  E-value=9.3e-08  Score=85.99  Aligned_cols=60  Identities=18%  Similarity=0.228  Sum_probs=44.2

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|++....+.++++     .-.+|++++|+||||||||||++.|++.++     +++|+| +.|.++.
T Consensus         6 l~~~~~~~~~~l~~is~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~   66 (242)
T cd03295           6 VTKRYGGGKKAVNNLNL-----EIAKGEFLVLIGPSGSGKTTTMKMINRLIE-----PTSGEIFIDGEDIR   66 (242)
T ss_pred             EEEEeCCcceEeeeeEE-----EECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCeEcC
Confidence            45566642334555544     224677899999999999999999998876     788998 6776654

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=98.70  E-value=3.2e-08  Score=88.47  Aligned_cols=62  Identities=15%  Similarity=0.116  Sum_probs=46.0

Q ss_pred             hhcccCchh---hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          10 RDTETDPQQ---RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        10 ~~~~~~~~~---~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      ..+..|+.+   ...+.++++     .-++|++++|+||||||||||++.|++.+.     +++|+| +.|.++..
T Consensus        10 ~l~~~~~~~~~~~~il~~isl-----~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~i~~   75 (233)
T PRK11629         10 NLCKRYQEGSVQTDVLHNVSF-----SIGEGEMMAIVGSSGSGKSTLLHLLGGLDT-----PTSGDVIFNGQPMSK   75 (233)
T ss_pred             eEEEEcCCCCcceeeEEeeEE-----EEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEEcCc
Confidence            346677653   245556555     224577899999999999999999998876     889999 57777653

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=98.69  E-value=9.9e-08  Score=83.97  Aligned_cols=58  Identities=19%  Similarity=0.168  Sum_probs=42.9

Q ss_pred             cccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          12 TETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      +..|+. ..++.++++     .-.+|++++|+||||||||||++.|++.+.     +++|+| +.|.++.
T Consensus         7 ~~~~~~-~~~l~~is~-----~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~v~~~g~~~~   65 (213)
T cd03301           7 TKRFGN-VTALDDLNL-----DIADGEFVVLLGPSGCGKTTTLRMIAGLEE-----PTSGRIYIGGRDVT   65 (213)
T ss_pred             EEEECC-eeeeeceEE-----EEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECC
Confidence            445544 345555554     224577899999999999999999998876     788988 5776664

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>TIGR00235 udk uridine kinase

Probab=98.68  E-value=1.9e-08  Score=88.58  Aligned_cols=38  Identities=37%  Similarity=0.327  Sum_probs=32.1

Q ss_pred             ccCCCeEEEEECCCchhHHHHHHHHHhhCC---CeEeecCC
Q psy8556          33 LLFRKTKVAILGPTASGKSSVALKISEYIP---CEIISIDS   70 (298)
Q Consensus        33 ~~~kg~iI~I~GpTGSGKSTLa~~La~~l~---~~iis~Ds   70 (298)
                      -+++|.+|+|+||||||||||++.|++.++   ..+++.|.
T Consensus         2 ~~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~   42 (207)
T TIGR00235         2 DKPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDN   42 (207)
T ss_pred             CCCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccc
Confidence            357889999999999999999999999876   35666665

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=98.68  E-value=4.8e-08  Score=86.53  Aligned_cols=60  Identities=20%  Similarity=0.110  Sum_probs=43.9

Q ss_pred             hcccCchh---hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQ---RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~---~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|++.   ..++.++++     .-++|++++|+||||||||||++.|++.+.     +++|+| +.|.++.
T Consensus         6 l~~~~~~~~~~~~il~~vs~-----~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~   69 (220)
T cd03293           6 VSKTYGGGGGAVTALEDISL-----SVEEGEFVALVGPSGCGKSTLLRIIAGLER-----PTSGEVLVDGEPVT   69 (220)
T ss_pred             EEEEcCCCCcceEEEeceeE-----EEeCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECc
Confidence            45667642   345566555     224567899999999999999999998776     788888 5676654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.68  E-value=1.1e-08  Score=91.17  Aligned_cols=63  Identities=24%  Similarity=0.336  Sum_probs=51.1

Q ss_pred             hhhcccCchhhhhhccccc-cccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCC
Q psy8556           9 DRDTETDPQQRQLTADFRR-IRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTN   82 (298)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~   82 (298)
                      ...+++||.+..-+.++++ ++.      |++++|+||||||||||+++|.+..+     +.+|+| ..|.++...
T Consensus         7 ~nl~k~yp~~~~aL~~Vnl~I~~------GE~VaiIG~SGaGKSTLLR~lngl~d-----~t~G~i~~~g~~i~~~   71 (258)
T COG3638           7 KNLSKTYPGGHQALKDVNLEINQ------GEMVAIIGPSGAGKSTLLRSLNGLVD-----PTSGEILFNGVQITKL   71 (258)
T ss_pred             eeeeeecCCCceeeeeEeEEeCC------CcEEEEECCCCCcHHHHHHHHhcccC-----CCcceEEecccchhcc
Confidence            3568999999998888887 444      55799999999999999999988655     888888 577776643

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=98.68  E-value=5.2e-08  Score=92.54  Aligned_cols=64  Identities=17%  Similarity=0.058  Sum_probs=48.0

Q ss_pred             hhcccCchh---hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCC
Q psy8556          10 RDTETDPQQ---RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNK   83 (298)
Q Consensus        10 ~~~~~~~~~---~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~k   83 (298)
                      ..++.|+++   ...+.++++     .-.+|++++|+||||||||||+++|++...     +++|+| +.|.++....
T Consensus         6 ~lsk~y~~~~~~~~~L~~vsl-----~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~-----p~~G~I~i~G~~i~~~~   73 (343)
T TIGR02314         6 NITKVFHQGTKTIQALNNVSL-----HVPAGQIYGVIGASGAGKSTLIRCVNLLER-----PTSGSVIVDGQDLTTLS   73 (343)
T ss_pred             EEEEEECCCCcceEEEeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECCcCC
Confidence            356778642   245666555     224577899999999999999999998776     899999 6888876443

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=98.68  E-value=5.1e-08  Score=93.64  Aligned_cols=144  Identities=15%  Similarity=0.164  Sum_probs=78.3

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHHH
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIER   89 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e~   89 (298)
                      .++.|++ ...+.++++     .-.+|++++|+||||||||||+++|++...     +++|+| +.|.++....|.....
T Consensus        20 l~~~~~~-~~~l~~vsl-----~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~-----p~~G~I~~~g~~i~~~~~~~r~i   88 (375)
T PRK09452         20 ISKSFDG-KEVISNLDL-----TINNGEFLTLLGPSGCGKTTVLRLIAGFET-----PDSGRIMLDGQDITHVPAENRHV   88 (375)
T ss_pred             EEEEECC-eEEEeeeEE-----EEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEECCCCCHHHCCE
Confidence            3455643 233444443     225678999999999999999999998876     899999 6887775433322222


Q ss_pred             cccccc--cccccCcCccchHHHHH-----HHHHHhhHHHhh--------cCCceEEEchhH---HHHHHHHcc----CC
Q psy8556          90 EITPHH--LIDIIEPTKSYSVIQFC-----EDALFSIKNILK--------KKKLPLLVGGTM---LYFKALRDG----IN  147 (298)
Q Consensus        90 ~~v~~~--l~~~~~~~e~~s~~~f~-----~~~~~~i~~i~~--------~~~~~IlvGGt~---~y~~~ll~~----~~  147 (298)
                      ..+++.  ++..++..+++...-..     ....+.+.++.+        ...+--++||..   ...++++..    +.
T Consensus        89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLL  168 (375)
T PRK09452         89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLL  168 (375)
T ss_pred             EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            222222  11112222222211000     000111122111        112234788876   467888865    34


Q ss_pred             CCCC--CCHHHHHHHHHHHH
Q psy8556         148 KLPP--ANLKLRTKFNIDIN  165 (298)
Q Consensus       148 ~~p~--~d~~lr~~l~~~~~  165 (298)
                      |.|.  .|...|..+...+.
T Consensus       169 DEP~s~LD~~~r~~l~~~L~  188 (375)
T PRK09452        169 DESLSALDYKLRKQMQNELK  188 (375)
T ss_pred             eCCCCcCCHHHHHHHHHHHH
Confidence            5564  37887877766654

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=98.68  E-value=1.2e-07  Score=85.50  Aligned_cols=145  Identities=17%  Similarity=0.238  Sum_probs=81.9

Q ss_pred             hhhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe-ccccCCCCCCCHH
Q psy8556           9 DRDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY-CDMDIGTNKPSII   87 (298)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy-~g~~i~t~kp~~~   87 (298)
                      ..++|.|. +...++++++     .-++|++++++|||||||||+++++.+++.     +++|.|+ .|.++.+..+  .
T Consensus         5 ~nvsk~y~-~~~av~~v~l-----~I~~gef~vliGpSGsGKTTtLkMINrLie-----pt~G~I~i~g~~i~~~d~--~   71 (309)
T COG1125           5 ENVSKRYG-NKKAVDDVNL-----TIEEGEFLVLIGPSGSGKTTTLKMINRLIE-----PTSGEILIDGEDISDLDP--V   71 (309)
T ss_pred             eeeehhcC-CceeeeeeeE-----EecCCeEEEEECCCCCcHHHHHHHHhcccC-----CCCceEEECCeecccCCH--H
Confidence            35678887 3344555554     224577899999999999999999977666     9999995 8888775433  2


Q ss_pred             HHccccccccc------ccCcCccchH----HHHHHH-HHHhhHHHhh---------cCCce-EEEchhH---HHHHHHH
Q psy8556          88 EREITPHHLID------IIEPTKSYSV----IQFCED-ALFSIKNILK---------KKKLP-LLVGGTM---LYFKALR  143 (298)
Q Consensus        88 e~~~v~~~l~~------~~~~~e~~s~----~~f~~~-~~~~i~~i~~---------~~~~~-IlvGGt~---~y~~~ll  143 (298)
                      +++.--.+.+.      .+...++...    ..|.+. ..+.+.++..         ..+.| =++||-.   -.++|+.
T Consensus        72 ~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALA  151 (309)
T COG1125          72 ELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALA  151 (309)
T ss_pred             HHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHh
Confidence            22221111111      1222222211    111111 1112222221         12334 4788876   4678888


Q ss_pred             cc----CCCCC--CCCHHHHHHHHHHHHh
Q psy8556         144 DG----INKLP--PANLKLRTKFNIDINK  166 (298)
Q Consensus       144 ~~----~~~~p--~~d~~lr~~l~~~~~~  166 (298)
                      .+    +.|.|  ..|+-.|..+.+++.+
T Consensus       152 adP~ilLMDEPFgALDpI~R~~lQ~e~~~  180 (309)
T COG1125         152 ADPPILLMDEPFGALDPITRKQLQEEIKE  180 (309)
T ss_pred             cCCCeEeecCCccccChhhHHHHHHHHHH
Confidence            65    34556  4577777777666543

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=5.7e-08  Score=86.27  Aligned_cols=78  Identities=23%  Similarity=0.207  Sum_probs=57.0

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHHHcccccccccccCcC--ccchHHHH
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIEREITPHHLIDIIEPT--KSYSVIQF  111 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e~~~v~~~l~~~~~~~--e~~s~~~f  111 (298)
                      ++|++.+|+||||||||||+..|++.-+.++   .+|+| |+|.+|....|+.....++.-   .+-.|.  +-.+..+|
T Consensus        28 ~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~V---t~G~I~~~GedI~~l~~~ERAr~GifL---afQ~P~ei~GV~~~~f  101 (251)
T COG0396          28 KEGEVHAIMGPNGSGKSTLAYTIMGHPKYEV---TEGEILFDGEDILELSPDERARAGIFL---AFQYPVEIPGVTNSDF  101 (251)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCCceE---ecceEEECCcccccCCHhHHHhcCCEE---eecCCccCCCeeHHHH
Confidence            5678999999999999999999999876555   46777 899999977776655555432   222332  35677888


Q ss_pred             HHHHHHh
Q psy8556         112 CEDALFS  118 (298)
Q Consensus       112 ~~~~~~~  118 (298)
                      .+.+...
T Consensus       102 Lr~a~n~  108 (251)
T COG0396         102 LRAAMNA  108 (251)
T ss_pred             HHHHHHh
Confidence            8766554

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=98.67  E-value=1.9e-07  Score=83.52  Aligned_cols=60  Identities=20%  Similarity=0.155  Sum_probs=43.6

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      .+..|++ ...+.++++     .-.+|++++|+||||||||||++.|++.++     +++|+| +.|.++..
T Consensus         6 l~~~~~~-~~~l~~vsl-----~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~   66 (236)
T cd03219           6 LTKRFGG-LVALDDVSF-----SVRPGEIHGLIGPNGAGKTTLFNLISGFLR-----PTSGSVLFDGEDITG   66 (236)
T ss_pred             eEEEECC-EEEecCceE-----EecCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCCceEEECCEECCC
Confidence            3455653 234555444     224677899999999999999999998776     788998 57766653

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=98.67  E-value=1.9e-07  Score=82.44  Aligned_cols=60  Identities=15%  Similarity=0.181  Sum_probs=44.5

Q ss_pred             hcccCchhh---hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQR---QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~---~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|++..   .++.++++     .-.+|++++|+||||||||||++.|++.++     +++|.| +.|.++.
T Consensus         7 v~~~~~~~~~~~~il~~~sl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~   70 (218)
T cd03266           7 LTKRFRDVKKTVQAVDGVSF-----TVKPGEVTGLLGPNGAGKTTTLRMLAGLLE-----PDAGFATVDGFDVV   70 (218)
T ss_pred             EEEecCCCCccceeecceEE-----EEcCCcEEEEECCCCCCHHHHHHHHhCCcC-----CCCceEEECCEEcc
Confidence            456676532   35555554     224577899999999999999999998776     788988 5776664

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=98.67  E-value=7.5e-08  Score=92.10  Aligned_cols=145  Identities=14%  Similarity=0.161  Sum_probs=80.2

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC--ceE-eccccCCCCCCCH
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDS--ALV-YCDMDIGTNKPSI   86 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds--~qv-y~g~~i~t~kp~~   86 (298)
                      ..++.|+. ...++++++     .-.+|++++|+||||||||||++.|++...     +++  |+| +.|.++....+..
T Consensus        10 ~l~~~~~~-~~~l~~vsl-----~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-----p~~~~G~i~~~g~~~~~~~~~~   78 (362)
T TIGR03258        10 HLRVAYGA-NTVLDDLSL-----EIEAGELLALIGKSGCGKTTLLRAIAGFVK-----AAGLTGRIAIADRDLTHAPPHK   78 (362)
T ss_pred             EEEEEECC-eEEEeeeEE-----EECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCCEEEEECCEECCCCCHHH
Confidence            34667764 345555555     123567899999999999999999998876     888  999 6777764322211


Q ss_pred             HHHcccccc--cccccCcCccchHHHHH-----HHHHHhhHHHhh--------cCCceEEEchhH---HHHHHHHcc---
Q psy8556          87 IEREITPHH--LIDIIEPTKSYSVIQFC-----EDALFSIKNILK--------KKKLPLLVGGTM---LYFKALRDG---  145 (298)
Q Consensus        87 ~e~~~v~~~--l~~~~~~~e~~s~~~f~-----~~~~~~i~~i~~--------~~~~~IlvGGt~---~y~~~ll~~---  145 (298)
                      .....+.+.  ++..++..+++...-..     ....+.+.++.+        ...+--++||..   ...++++..   
T Consensus        79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~l  158 (362)
T TIGR03258        79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDV  158 (362)
T ss_pred             CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            112222222  11112222222211000     001111222221        112234788876   467888865   


Q ss_pred             -CCCCCC--CCHHHHHHHHHHHH
Q psy8556         146 -INKLPP--ANLKLRTKFNIDIN  165 (298)
Q Consensus       146 -~~~~p~--~d~~lr~~l~~~~~  165 (298)
                       +.|.|.  .|+..+..+.+.+.
T Consensus       159 lLLDEP~s~LD~~~r~~l~~~l~  181 (362)
T TIGR03258       159 LLLDEPLSALDANIRANMREEIA  181 (362)
T ss_pred             EEEcCccccCCHHHHHHHHHHHH
Confidence             446664  47888887776654

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=98.66  E-value=7.9e-08  Score=89.84  Aligned_cols=62  Identities=13%  Similarity=0.219  Sum_probs=46.8

Q ss_pred             hhhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556           9 DRDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      ...++.|++ ...++++++     .-++|++++|+||||||||||++.|++.+.     +++|.| +.|.++..
T Consensus        11 ~~l~k~~~~-~~~l~~vsl-----~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~-----p~~G~v~i~G~~~~~   73 (306)
T PRK13537         11 RNVEKRYGD-KLVVDGLSF-----HVQRGECFGLLGPNGAGKTTTLRMLLGLTH-----PDAGSISLCGEPVPS   73 (306)
T ss_pred             EeEEEEECC-eEEEecceE-----EEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEeccc
Confidence            345677864 345556555     224577999999999999999999998876     899999 57777653

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=98.66  E-value=9.7e-09  Score=93.67  Aligned_cols=146  Identities=18%  Similarity=0.155  Sum_probs=79.1

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCC-----CeEeecCCceEeccccC--------------CCCCCCHHHHcccccccccc
Q psy8556          39 KVAILGPTASGKSSVALKISEYIP-----CEIISIDSALVYCDMDI--------------GTNKPSIIEREITPHHLIDI   99 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~-----~~iis~Ds~qvy~g~~i--------------~t~kp~~~e~~~v~~~l~~~   99 (298)
                      +|+|+|+|||||||+++.|+..++     ..+|+.|+..-|.....              ..-.|.+.+...+..++...
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~~L   80 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFRTY   80 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHHHH
Confidence            589999999999999999987664     46788998433321110              00014443333333333322


Q ss_pred             cCcC----ccc--hH---HHHHHHHHH-hhHHHhhcCCceEEEchhH-HHH--HHHHccCCCC-----CCCCHHHHHHHH
Q psy8556         100 IEPT----KSY--SV---IQFCEDALF-SIKNILKKKKLPLLVGGTM-LYF--KALRDGINKL-----PPANLKLRTKFN  161 (298)
Q Consensus       100 ~~~~----e~~--s~---~~f~~~~~~-~i~~i~~~~~~~IlvGGt~-~y~--~~ll~~~~~~-----p~~d~~lr~~l~  161 (298)
                      ....    ..|  +.   ..+...... .-.+....+...|+++|.+ +|.  ..-+..+.|+     |+.+.++.+++.
T Consensus        81 ~~g~~i~~p~Y~h~~~~~~~~~~~~gtft~~~~~~~p~dvIivEGLhg~~~~~~~~lr~~~DlkIfVd~~~dlr~irRI~  160 (277)
T cd02029          81 GETGRGRSRYYLHSDEEAAPFNQEPGTFTPWEDLPEDTDLLFYEGLHGGVVTEGYNVAQHADLLVGVVPIINLEWIQKIH  160 (277)
T ss_pred             HcCCCcccceeeccccccccccCCCCccCCcccccCCCcEEEECCCCcccccccHHHHHhCCeEEEecCcHHHHHHHHHH
Confidence            2211    011  10   000000000 0001122456667888876 222  1233333333     677788888999


Q ss_pred             HHHHhhCHH---HHHHHHhcCCccccC
Q psy8556         162 IDINKYGIS---FLYDKLKLLDPVTAN  185 (298)
Q Consensus       162 ~~~~~~g~~---~l~~~L~~~Dp~~a~  185 (298)
                      |+..++|++   .+.+.++++ |.+..
T Consensus       161 RD~~ERGrs~EsVi~qilrrm-pdy~~  186 (277)
T cd02029         161 RDTAERGYSAEAVMDTILRRM-PDYIN  186 (277)
T ss_pred             hhhHhhCCCHHHHHHHHHHhC-chHHh
Confidence            999999976   666777776 66655

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.66  E-value=8.3e-08  Score=81.42  Aligned_cols=60  Identities=18%  Similarity=0.109  Sum_probs=44.2

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      ..+..|++. ..+.++++     .-++|++++|+||||||||||++.|++..+     +++|+| +.|.++.
T Consensus         5 ~l~~~~~~~-~vl~~i~~-----~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~v~~~g~~~~   65 (163)
T cd03216           5 GITKRFGGV-KALDGVSL-----SVRRGEVHALLGENGAGKSTLMKILSGLYK-----PDSGEILVDGKEVS   65 (163)
T ss_pred             EEEEEECCe-EEEeeeEE-----EEeCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEECC
Confidence            345667643 34555444     235677999999999999999999998876     889998 4666554

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=98.65  E-value=2.1e-07  Score=81.60  Aligned_cols=59  Identities=20%  Similarity=0.231  Sum_probs=43.7

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|++ ...+.++++     .-.+|++++|+||||||||||++.|++.++     +++|+| +.|.++.
T Consensus         6 l~~~~~~-~~~l~~~~~-----~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~   65 (208)
T cd03268           6 LTKTYGK-KRVLDDISL-----HVKKGEIYGFLGPNGAGKTTTMKIILGLIK-----PDSGEITFDGKSYQ   65 (208)
T ss_pred             EEEEECC-eEeEeeeEE-----EEcCCcEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEECCCccc
Confidence            4556643 345555554     224577899999999999999999998776     889998 5676654

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=98.65  E-value=1.2e-07  Score=88.35  Aligned_cols=59  Identities=19%  Similarity=0.265  Sum_probs=44.4

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .++.|++ ...+.++++     .-++|++++|+||||||||||++.|++.+.     +++|.| +.|.++.
T Consensus        10 l~~~~~~-~~~l~~vsl-----~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~   69 (303)
T TIGR01288        10 VSKSYGD-KVVVNDLSF-----TIARGECFGLLGPNGAGKSTIARMLLGMIS-----PDRGKITVLGEPVP   69 (303)
T ss_pred             EEEEeCC-eEEEcceeE-----EEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECc
Confidence            4566754 345566555     224577899999999999999999998776     889998 5776664

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=98.65  E-value=1.2e-07  Score=89.93  Aligned_cols=62  Identities=16%  Similarity=0.119  Sum_probs=46.4

Q ss_pred             hhcccCch---hhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          10 RDTETDPQ---QRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        10 ~~~~~~~~---~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      ..++.|+.   ....+.++++     .-++|++++|+||||||||||++.|++.+.     +++|+| +.|.++..
T Consensus         6 ~l~~~y~~~~~~~~il~~vsl-----~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~-----p~~G~I~~~g~~i~~   71 (343)
T PRK11153          6 NISKVFPQGGRTIHALNNVSL-----HIPAGEIFGVIGASGAGKSTLIRCINLLER-----PTSGRVLVDGQDLTA   71 (343)
T ss_pred             eEEEEeCCCCCceEEEEeeEE-----EEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEECCc
Confidence            34667762   2345566555     224577899999999999999999998876     889999 67877654

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.65  E-value=1.5e-07  Score=86.55  Aligned_cols=61  Identities=20%  Similarity=0.331  Sum_probs=46.4

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      .+..|+++...+.++++     .-++|++++|+||||||||||++.|++.+.     +++|+| +.|.++..
T Consensus         7 l~~~~~~~~~~l~~vsl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~   68 (274)
T PRK13644          7 VSYSYPDGTPALENINL-----VIKKGEYIGIIGKNGSGKSTLALHLNGLLR-----PQKGKVLVSGIDTGD   68 (274)
T ss_pred             EEEEcCCCCceeeeeEE-----EEeCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEECCc
Confidence            46677654446666655     224577899999999999999999998876     889999 57776653

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=98.65  E-value=1.3e-07  Score=82.41  Aligned_cols=60  Identities=22%  Similarity=0.117  Sum_probs=45.0

Q ss_pred             hcccCch-----hhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhC--CCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQ-----QRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYI--PCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~-----~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l--~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|+.     +...+.+++.     .-.+|++++|+||||||||||++.|++.+  +     +++|+| +.|.++.
T Consensus         9 ls~~~~~~~~~~~~~~l~~~~~-----~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~-----~~~G~i~~~g~~~~   76 (194)
T cd03213           9 LTVTVKSSPSKSGKQLLKNVSG-----KAKPGELTAIMGPSGAGKSTLLNALAGRRTGL-----GVSGEVLINGRPLD   76 (194)
T ss_pred             eEEEEecCCCcccccceecceE-----EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-----CCceEEEECCEeCc
Confidence            4566764     2456666555     22457789999999999999999999887  5     788998 6776654

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=98.64  E-value=1.9e-07  Score=82.00  Aligned_cols=58  Identities=21%  Similarity=0.180  Sum_probs=42.5

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDI   79 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i   79 (298)
                      .+..|++ ..++.++++     .-.+|++++|+||||||||||++.|++.++     +++|+| +.|.++
T Consensus         6 l~~~~~~-~~~l~~v~~-----~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~   64 (210)
T cd03269           6 VTKRFGR-VTALDDISF-----SVEKGEIFGLLGPNGAGKTTTIRMILGIIL-----PDSGEVLFDGKPL   64 (210)
T ss_pred             EEEEECC-EEEEeeeEE-----EEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCCch
Confidence            3455653 345555544     224577899999999999999999998876     789998 566555

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=98.64  E-value=8.6e-08  Score=88.37  Aligned_cols=55  Identities=24%  Similarity=0.250  Sum_probs=40.7

Q ss_pred             hcccCchhhhhhccccc-cccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccc
Q psy8556          11 DTETDPQQRQLTADFRR-IRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDM   77 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~-~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~   77 (298)
                      +++.|+.-..+ +|++. ++      .|+++++.||||||||||+++||++..     +|+|.| +.|.
T Consensus         8 ~~~~~~~~~a~-~di~l~i~------~Ge~vaLlGpSGaGKsTlLRiIAGLe~-----p~~G~I~~~~~   64 (345)
T COG1118           8 VKKRFGAFGAL-DDISLDIK------SGELVALLGPSGAGKSTLLRIIAGLET-----PDAGRIRLNGR   64 (345)
T ss_pred             hhhhccccccc-ccceeeec------CCcEEEEECCCCCcHHHHHHHHhCcCC-----CCCceEEECCE
Confidence            34444444332 35555 44      467899999999999999999999877     999999 4555

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=98.64  E-value=2.1e-07  Score=81.79  Aligned_cols=42  Identities=29%  Similarity=0.385  Sum_probs=35.7

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      -.+|++++|+||||||||||++.|++.++     +++|+| +.|.++.
T Consensus        21 i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~-----~~~G~i~~~g~~~~   63 (211)
T cd03298          21 FAQGEITAIVGPSGSGKSTLLNLIAGFET-----PQSGRVLINGVDVT   63 (211)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEcC
Confidence            35688999999999999999999998876     889998 5676654

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=98.64  E-value=3.2e-08  Score=98.79  Aligned_cols=42  Identities=26%  Similarity=0.383  Sum_probs=37.1

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      ++|+.++|+||||||||||++.|++.+.     +++|.| +.|.++..
T Consensus       359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~-----p~~G~I~i~g~~i~~  401 (529)
T TIGR02868       359 PPGERVAILGPSGSGKSTLLMLLTGLLD-----PLQGEVTLDGVSVSS  401 (529)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEhhh
Confidence            6788999999999999999999999887     899999 57777763

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=98.64  E-value=3e-07  Score=82.54  Aligned_cols=60  Identities=17%  Similarity=0.147  Sum_probs=44.8

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      .+..|++ ...+.+.++     .-.+|++++|+||||||||||++.|++.+.     +++|.| +.|.++..
T Consensus         8 l~~~~~~-~~~l~~vs~-----~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~   68 (242)
T TIGR03411         8 LSVSFDG-FKALNDLSL-----YVDPGELRVIIGPNGAGKTTMMDVITGKTR-----PDEGSVLFGGTDLTG   68 (242)
T ss_pred             eEEEcCC-eEEeeeeeE-----EEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEEECCeecCC
Confidence            4566764 345555554     224678999999999999999999998876     889998 57766643

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=98.64  E-value=2.6e-07  Score=82.91  Aligned_cols=58  Identities=21%  Similarity=0.236  Sum_probs=43.1

Q ss_pred             cccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          12 TETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      +..|++ ...+.++++     .-.+|++++|+||||||||||++.|++.+.     +++|.| +.|.++.
T Consensus         8 ~~~~~~-~~il~~~s~-----~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~   66 (240)
T PRK09493          8 SKHFGP-TQVLHNIDL-----NIDQGEVVVIIGPSGSGKSTLLRCINKLEE-----ITSGDLIVDGLKVN   66 (240)
T ss_pred             EEEECC-eEEeeeeeE-----EEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECC
Confidence            455653 344555554     224678999999999999999999998775     889998 5776654

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.63  E-value=2.6e-07  Score=88.43  Aligned_cols=51  Identities=18%  Similarity=0.162  Sum_probs=40.9

Q ss_pred             hhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          21 LTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        21 ~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      .+.++++     .-++|++++|+||||||||||+++|++...     +++|+| +.|.++..
T Consensus         8 ~l~~vs~-----~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~-----p~~G~I~i~G~~i~~   59 (363)
T TIGR01186         8 GVNDADL-----AIAKGEIFVIMGLSGSGKSTTVRMLNRLIE-----PTAGQIFIDGENIMK   59 (363)
T ss_pred             eEEeeEE-----EEcCCCEEEEECCCCChHHHHHHHHhCCCC-----CCceEEEECCEECCc
Confidence            4455554     224678999999999999999999998877     899999 58877764

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=98.63  E-value=1.6e-08  Score=90.41  Aligned_cols=73  Identities=21%  Similarity=0.256  Sum_probs=58.0

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHHHcccccccccccCcCccchHHHHHH
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQFCE  113 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~~~f~~  113 (298)
                      .+|++++|+|||||||||+.+.|.+.+.     +|+|.| |+|.+|+..+|...-..++...| +...+...+|+.+...
T Consensus        28 ~~Gei~~LIGPNGAGKTTlfNlitG~~~-----P~~G~v~~~G~~it~l~p~~iar~Gi~RTF-Q~~rlF~~lTVlENv~  101 (250)
T COG0411          28 RPGEIVGLIGPNGAGKTTLFNLITGFYK-----PSSGTVIFRGRDITGLPPHRIARLGIARTF-QITRLFPGLTVLENVA  101 (250)
T ss_pred             cCCeEEEEECCCCCCceeeeeeeccccc-----CCCceEEECCcccCCCCHHHHHhccceeec-ccccccCCCcHHHHHH
Confidence            5688999999999999999999988887     999999 79999987777766666666543 3345666777766654

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.63  E-value=1.5e-07  Score=82.52  Aligned_cols=140  Identities=14%  Similarity=-0.006  Sum_probs=75.2

Q ss_pred             hcccCchh---hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCH
Q psy8556          11 DTETDPQQ---RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSI   86 (298)
Q Consensus        11 ~~~~~~~~---~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~   86 (298)
                      .+..||.+   ...+.++++     .-.+|++++|+||||||||||++.|++.+...  .+++|+| +.|.++....  .
T Consensus         9 ~~~~~~~~~~~~~il~~~s~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~~~~G~i~i~g~~~~~~~--~   79 (202)
T cd03233           9 ISFTTGKGRSKIPILKDFSG-----VVKPGEMVLVLGRPGSGCSTLLKALANRTEGN--VSVEGDIHYNGIPYKEFA--E   79 (202)
T ss_pred             cEEEeccCCCCceeeeeEEE-----EECCCcEEEEECCCCCCHHHHHHHhcccCCCC--CCcceEEEECCEECccch--h
Confidence            46677653   344555544     22457789999999999999999998875411  1578888 5776665321  1


Q ss_pred             HHHcccccccccccCcCccchHHHHHHHHHHhhHHHhhcCCceEEEchhH---HHHHHHHcc----CCCCCCC--CHHHH
Q psy8556          87 IEREITPHHLIDIIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTM---LYFKALRDG----INKLPPA--NLKLR  157 (298)
Q Consensus        87 ~e~~~v~~~l~~~~~~~e~~s~~~f~~~~~~~i~~i~~~~~~~IlvGGt~---~y~~~ll~~----~~~~p~~--d~~lr  157 (298)
                      .....+. +..+.......+++.++....... .   ....+--++||..   ...++++.+    +.|.|..  |+..+
T Consensus        80 ~~~~~i~-~~~q~~~~~~~~tv~~~l~~~~~~-~---~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~  154 (202)
T cd03233          80 KYPGEII-YVSEEDVHFPTLTVRETLDFALRC-K---GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTA  154 (202)
T ss_pred             hhcceEE-EEecccccCCCCcHHHHHhhhhhh-c---cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHH
Confidence            1111111 111111222345666655432211 0   1122223677766   355777755    3455543  66656


Q ss_pred             HHHHHHH
Q psy8556         158 TKFNIDI  164 (298)
Q Consensus       158 ~~l~~~~  164 (298)
                      +.+.+.+
T Consensus       155 ~~~~~~l  161 (202)
T cd03233         155 LEILKCI  161 (202)
T ss_pred             HHHHHHH
Confidence            5554443

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=98.62  E-value=1e-07  Score=91.67  Aligned_cols=144  Identities=15%  Similarity=0.214  Sum_probs=77.7

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHH
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIE   88 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e   88 (298)
                      ..++.|++ ...+.++++     .-.+|++++|+||||||||||++.||+...     +++|+| +.|.++....|....
T Consensus        24 ~v~~~~~~-~~~l~~vsl-----~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~-----p~~G~I~i~g~~i~~~~~~~r~   92 (377)
T PRK11607         24 NLTKSFDG-QHAVDDVSL-----TIYKGEIFALLGASGCGKSTLLRMLAGFEQ-----PTAGQIMLDGVDLSHVPPYQRP   92 (377)
T ss_pred             eEEEEECC-EEEEeeeEE-----EEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEECCCCCHHHCC
Confidence            34556643 234444443     224578999999999999999999998876     899999 577766533222222


Q ss_pred             Hcccccc--cccccCcCccchHHHHH-----HHHHHhhHHHhh--------cCCceEEEchhH---HHHHHHHcc----C
Q psy8556          89 REITPHH--LIDIIEPTKSYSVIQFC-----EDALFSIKNILK--------KKKLPLLVGGTM---LYFKALRDG----I  146 (298)
Q Consensus        89 ~~~v~~~--l~~~~~~~e~~s~~~f~-----~~~~~~i~~i~~--------~~~~~IlvGGt~---~y~~~ll~~----~  146 (298)
                      ...+++.  ++..++..+++......     ....+.+.++.+        ...+--++||..   ...++++.+    +
T Consensus        93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLL  172 (377)
T PRK11607         93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLL  172 (377)
T ss_pred             EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            2223322  22222222332211000     001111222221        112224788876   466888865    4


Q ss_pred             CCCCC--CCHHHHHHHHHHH
Q psy8556         147 NKLPP--ANLKLRTKFNIDI  164 (298)
Q Consensus       147 ~~~p~--~d~~lr~~l~~~~  164 (298)
                      .|.|.  .|...+..+...+
T Consensus       173 LDEP~s~LD~~~r~~l~~~l  192 (377)
T PRK11607        173 LDEPMGALDKKLRDRMQLEV  192 (377)
T ss_pred             EeCCcccCCHHHHHHHHHHH
Confidence            45664  3777777776544

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=98.62  E-value=5.7e-08  Score=83.90  Aligned_cols=38  Identities=13%  Similarity=0.247  Sum_probs=33.2

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccc
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDM   77 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~   77 (298)
                      ++|++++|+||||||||||++.|++.+.     +++|.| +.|.
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~   61 (177)
T cd03222          23 KEGEVIGIVGPNGTGKTTAVKILAGQLI-----PNGDNDEWDGI   61 (177)
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCCC-----CCCcEEEECCE
Confidence            6688999999999999999999998876     889998 4553

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK07429 phosphoribulokinase; Provisional

Probab=98.62  E-value=2.1e-08  Score=94.60  Aligned_cols=38  Identities=16%  Similarity=0.336  Sum_probs=32.1

Q ss_pred             ccCCCeEEEEECCCchhHHHHHHHHHhhCC---CeEeecCC
Q psy8556          33 LLFRKTKVAILGPTASGKSSVALKISEYIP---CEIISIDS   70 (298)
Q Consensus        33 ~~~kg~iI~I~GpTGSGKSTLa~~La~~l~---~~iis~Ds   70 (298)
                      ++.++.+|+|+|+|||||||+++.|++.++   +.+++.|.
T Consensus         4 ~~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd   44 (327)
T PRK07429          4 MPDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDD   44 (327)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecc
Confidence            346678999999999999999999999987   45677775

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=98.61  E-value=2.6e-07  Score=81.54  Aligned_cols=58  Identities=16%  Similarity=0.069  Sum_probs=43.4

Q ss_pred             hhhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556           9 DRDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      +..++.|++..  + |+++     .-.+ ++++|+||||||||||++.|++.+.     +++|+| +.|.++.
T Consensus         4 ~~l~~~~~~~~--~-~vsl-----~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~   62 (214)
T cd03297           4 VDIEKRLPDFT--L-KIDF-----DLNE-EVTGIFGASGAGKSTLLRCIAGLEK-----PDGGTIVLNGTVLF   62 (214)
T ss_pred             eeeeEecCCee--e-CceE-----EEcc-eeEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEecc
Confidence            35678887642  2 4443     2245 7899999999999999999998876     788988 5666553

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=98.61  E-value=7e-08  Score=99.31  Aligned_cols=125  Identities=15%  Similarity=0.073  Sum_probs=76.0

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCH--HHHcccccccccc-cCcCc------
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSI--IEREITPHHLIDI-IEPTK------  104 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~--~e~~~v~~~l~~~-~~~~e------  104 (298)
                      ++|+.++|+|+||||||||++.|.+.+.     +.+|+| +.|.|+..-.+..  ..+..+++.-.-+ -+..+      
T Consensus       497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly~-----p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~  571 (709)
T COG2274         497 PPGEKVAIVGRSGSGKSTLLKLLLGLYK-----PQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGN  571 (709)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCC
Confidence            5677899999999999999999999988     899999 6888876433322  1223333321100 01111      


Q ss_pred             -cchHHHHHH-----HHHHhhHHHhhcCCceEEEchhH---------HHHHHHHcc----CCCCCCC--CHHHHHHHHHH
Q psy8556         105 -SYSVIQFCE-----DALFSIKNILKKKKLPLLVGGTM---------LYFKALRDG----INKLPPA--NLKLRTKFNID  163 (298)
Q Consensus       105 -~~s~~~f~~-----~~~~~i~~i~~~~~~~IlvGGt~---------~y~~~ll~~----~~~~p~~--d~~lr~~l~~~  163 (298)
                       ..+..+..+     .+.+.|......-+.+|-.||.+         ...++++.+    +.|.|.+  |++..+++.+.
T Consensus       572 p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~  651 (709)
T COG2274         572 PEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQN  651 (709)
T ss_pred             CCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHH
Confidence             222222222     23455666666677788666655         467888876    3455543  66666555444


Q ss_pred             H
Q psy8556         164 I  164 (298)
Q Consensus       164 ~  164 (298)
                      +
T Consensus       652 L  652 (709)
T COG2274         652 L  652 (709)
T ss_pred             H
Confidence            3

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=98.60  E-value=3.6e-08  Score=85.38  Aligned_cols=56  Identities=20%  Similarity=0.249  Sum_probs=42.1

Q ss_pred             CchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          15 DPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      |+++...++++++     .-.+|++++|+||||||||||++.|++.+.     +++|+| +.|.++.
T Consensus         1 ~~~~~~il~~vsl-----~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~   57 (190)
T TIGR01166         1 YPGGPEVLKGLNF-----AAERGEVLALLGANGAGKSTLLLHLNGLLR-----PQSGAVLIDGEPLD   57 (190)
T ss_pred             CCCccceecceeE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceeEEECCEEcc
Confidence            3444455666655     224567899999999999999999998776     789998 5776653

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=98.60  E-value=2.3e-08  Score=86.35  Aligned_cols=129  Identities=21%  Similarity=0.294  Sum_probs=64.9

Q ss_pred             EEEEECCCchhHHHHHHHHHhhC-----CCeEeecCCceEeccccCC------CCCCCHHHHcccccccccccCcCc-cc
Q psy8556          39 KVAILGPTASGKSSVALKISEYI-----PCEIISIDSALVYCDMDIG------TNKPSIIEREITPHHLIDIIEPTK-SY  106 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l-----~~~iis~Ds~qvy~g~~i~------t~kp~~~e~~~v~~~l~~~~~~~e-~~  106 (298)
                      +|+|.|++|||||||+..|+..+     +..+|+.|+  +|+...-.      .+.+...+...+..++........ .+
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Dd--f~~~~~~~~~~~g~~d~~~~~d~~~l~~~l~~l~~~~~~~~   78 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDD--YYVPRKTPRDEDGNYDFESILDLDLLNKNLHDLLNGKEVEL   78 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhh--cccCcccccccCCCCCCCccccHHHHHHHHHHHHCCCeeec
Confidence            58999999999999999999986     356788887  55422000      000100111111111111110000 00


Q ss_pred             hHHHHHHHHHHhhHHHhhcCCceEEEchhHHHHHHHHccCCCC-----CCCCH-HHHHHHHHHHHhhCHH
Q psy8556         107 SVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKL-----PPANL-KLRTKFNIDINKYGIS  170 (298)
Q Consensus       107 s~~~f~~~~~~~i~~i~~~~~~~IlvGGt~~y~~~ll~~~~~~-----p~~d~-~lr~~l~~~~~~~g~~  170 (298)
                      ...+|.......-..+...+...|++.|...+...+ ..+.++     ++.+. .+.+++.++..++|..
T Consensus        79 p~yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~~l-~~~~d~~I~vd~~~~~~rl~rri~RD~~~rg~~  147 (179)
T cd02028          79 PIYDFRTGKRRGYRKLKLPPSGVVILEGIYALNERL-RSLLDIRVAVSGGVHLNRLLRRVVRDIQFRGYS  147 (179)
T ss_pred             ccceeECCccCCCceEEeCCCCEEEEecHHhcCHhH-HhhcCEEEEEeCCccHHHHHHHHHHhHHhhCCC
Confidence            011111100000001112234467888988765543 333333     45555 7788999998888865

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=98.59  E-value=3.8e-07  Score=81.73  Aligned_cols=59  Identities=19%  Similarity=0.189  Sum_probs=43.6

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|++ ..++.++++     .-.+|++++|+||||||||||++.|++.+.     +++|+| +.|.++.
T Consensus         7 l~~~~~~-~~~l~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~i~   66 (236)
T TIGR03864         7 LSFAYGA-RRALDDVSF-----TVRPGEFVALLGPNGAGKSTLFSLLTRLYV-----AQEGQISVAGHDLR   66 (236)
T ss_pred             eEEEECC-EEEEeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEECCEEcc
Confidence            3455653 345555554     224577899999999999999999998776     889998 5776664

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=98.59  E-value=3.4e-07  Score=87.31  Aligned_cols=41  Identities=20%  Similarity=0.179  Sum_probs=35.5

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+|++++|+||||||||||++.|++.+.     +++|+| +.|.++.
T Consensus        21 ~~Gei~~l~G~nGsGKSTLl~~iaGl~~-----p~~G~I~~~g~~i~   62 (354)
T TIGR02142        21 PGQGVTAIFGRSGSGKTTLIRLIAGLTR-----PDEGEIVLNGRTLF   62 (354)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECc
Confidence            5678999999999999999999998876     889998 5776664

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=98.59  E-value=4.1e-07  Score=84.72  Aligned_cols=60  Identities=27%  Similarity=0.336  Sum_probs=45.3

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      .++.|++ ...++|+++     .-.+|++++|+||||||||||++.|++.+.     +++|.| +.|.++..
T Consensus         8 l~~~~~~-~~~l~~is~-----~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~-----~~~G~i~i~g~~~~~   68 (301)
T TIGR03522         8 LTKLYGT-QNALDEVSF-----EAQKGRIVGFLGPNGAGKSTTMKIITGYLP-----PDSGSVQVCGEDVLQ   68 (301)
T ss_pred             EEEEECC-EEEEEEeEE-----EEeCCeEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEccc
Confidence            4566754 345566555     224577999999999999999999998776     899999 57776653

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.59  E-value=3.1e-08  Score=86.81  Aligned_cols=59  Identities=17%  Similarity=0.209  Sum_probs=44.2

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDI   79 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i   79 (298)
                      .++.|+++...+.++++     .-.+|++++|+||||||||||++.|++.+.     +++|+| +.|.++
T Consensus         5 l~~~~~~~~~~l~~v~~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~   64 (205)
T cd03226           5 ISFSYKKGTEILDDLSL-----DLYAGEIIALTGKNGAGKTTLAKILAGLIK-----ESSGSILLNGKPI   64 (205)
T ss_pred             EEEEeCCcCceeeeeeE-----EEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEEh
Confidence            45667653445555554     224577899999999999999999998776     889998 567655

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=98.59  E-value=2.6e-07  Score=88.06  Aligned_cols=41  Identities=20%  Similarity=0.142  Sum_probs=35.2

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+|++++|+||||||||||++.|++.+.     +++|+| +.|.++.
T Consensus        22 ~~Ge~~~l~G~nGsGKSTLl~~iaGl~~-----p~~G~I~~~g~~~~   63 (352)
T PRK11144         22 PAQGITAIFGRSGAGKTSLINAISGLTR-----PQKGRIVLNGRVLF   63 (352)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEcc
Confidence            5678999999999999999999998876     889998 5676654

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=98.58  E-value=1.3e-08  Score=88.72  Aligned_cols=24  Identities=29%  Similarity=0.654  Sum_probs=22.8

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCC
Q psy8556          39 KVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      +|+|.||+|||||||++.|+..++
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~   24 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILN   24 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC
Confidence            699999999999999999999886

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.58  E-value=4.4e-07  Score=82.13  Aligned_cols=60  Identities=12%  Similarity=0.102  Sum_probs=44.0

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      .+..|++ ...+.++++     .-.+|++++|+||||||||||++.|++.++     +++|.| +.|.++..
T Consensus        11 l~~~~~~-~~~l~~is~-----~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~   71 (255)
T PRK11300         11 LMMRFGG-LLAVNNVNL-----EVREQEIVSLIGPNGAGKTTVFNCLTGFYK-----PTGGTILLRGQHIEG   71 (255)
T ss_pred             EEEEECC-EEEEEeeee-----EEcCCeEEEEECCCCCCHHHHHHHHhCCcC-----CCcceEEECCEECCC
Confidence            4556653 344555544     224678999999999999999999998876     888988 57766653

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=98.58  E-value=9.2e-08  Score=82.11  Aligned_cols=59  Identities=20%  Similarity=0.270  Sum_probs=43.6

Q ss_pred             hcccCchhh-hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccC
Q psy8556          11 DTETDPQQR-QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDI   79 (298)
Q Consensus        11 ~~~~~~~~~-~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i   79 (298)
                      .+.+|++.. ..+.++++     .-.+|++++|+||||||||||++.|++..+     +++|+| +.|.++
T Consensus         6 ~~~~~~~~~~~~l~~i~~-----~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~g~~~   66 (178)
T cd03247           6 VSFSYPEQEQQVLKNLSL-----ELKQGEKIALLGRSGSGKSTLLQLLTGDLK-----PQQGEITLDGVPV   66 (178)
T ss_pred             EEEEeCCCCccceEEEEE-----EEcCCCEEEEECCCCCCHHHHHHHHhccCC-----CCCCEEEECCEEH
Confidence            456676542 45555554     224577899999999999999999998876     788988 566554

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=98.58  E-value=5.5e-08  Score=88.17  Aligned_cols=56  Identities=20%  Similarity=0.299  Sum_probs=45.5

Q ss_pred             cCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556          14 TDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY   74 (298)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy   74 (298)
                      +||..+..+++++.......-.+|++++|+||||||||||++.|++.+.     +++|+|+
T Consensus         2 ~y~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~-----p~~G~i~   57 (246)
T cd03237           2 TYPTMKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK-----PDEGDIE   57 (246)
T ss_pred             CCcccccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc-----CCCCeEE
Confidence            5777777888888844444446799999999999999999999998876     7788884

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=98.57  E-value=3.8e-07  Score=83.32  Aligned_cols=59  Identities=15%  Similarity=0.146  Sum_probs=43.6

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|++ ...+.++++     .-.+|++++|+||||||||||++.|++.++     +++|.| +.|.++.
T Consensus        17 l~~~~~~-~~il~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~   76 (265)
T PRK10575         17 VSFRVPG-RTLLHPLSL-----TFPAGKVTGLIGHNGSGKSTLLKMLGRHQP-----PSEGEILLDAQPLE   76 (265)
T ss_pred             EEEEECC-EEEEeeeee-----EEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCCEEEECCEehh
Confidence            3456653 345555554     224577899999999999999999998776     788998 5776654

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=98.57  E-value=4.6e-07  Score=79.66  Aligned_cols=58  Identities=17%  Similarity=0.196  Sum_probs=42.1

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|++ ..+++++++     .-.+| +++|+||||||||||++.|++.+.     +++|+| +.|.++.
T Consensus         6 ~~~~~~~-~~~l~~vs~-----~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~   64 (211)
T cd03264           6 LTKRYGK-KRALDGVSL-----TLGPG-MYGLLGPNGAGKTTLMRILATLTP-----PSSGTIRIDGQDVL   64 (211)
T ss_pred             EEEEECC-EEEEcceeE-----EEcCC-cEEEECCCCCCHHHHHHHHhCCCC-----CCccEEEECCCccc
Confidence            3455643 245555554     11236 799999999999999999998876     889999 5776654

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=98.56  E-value=1.7e-07  Score=91.98  Aligned_cols=64  Identities=25%  Similarity=0.278  Sum_probs=49.4

Q ss_pred             hcccCchhh-hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCC
Q psy8556          11 DTETDPQQR-QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKP   84 (298)
Q Consensus        11 ~~~~~~~~~-~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp   84 (298)
                      ++=+||+++ ..++|+++     .-..|+-|+|+|+|||||||++..|++.+.     +++|+| ..|.++...++
T Consensus       342 vsF~y~~~~~~~L~~~~l-----~l~~GEkvAIlG~SGsGKSTllqLl~~~~~-----~~~G~i~~~g~~~~~l~~  407 (573)
T COG4987         342 VSFTYPGQQTKALKNFNL-----TLAQGEKVAILGRSGSGKSTLLQLLAGAWD-----PQQGSITLNGVEIASLDE  407 (573)
T ss_pred             ceeecCCCccchhhccce-----eecCCCeEEEECCCCCCHHHHHHHHHhccC-----CCCCeeeECCcChhhCCh
Confidence            344566666 66666666     224455699999999999999999999988     899999 78888775554

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.55  E-value=2.6e-07  Score=80.34  Aligned_cols=130  Identities=12%  Similarity=0.031  Sum_probs=70.4

Q ss_pred             hcccCch---hhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCH
Q psy8556          11 DTETDPQ---QRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSI   86 (298)
Q Consensus        11 ~~~~~~~---~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~   86 (298)
                      .+..|+.   +..++.++++     .-.+|++++|+||||||||||++.|++...   ..+++|+| +.|.++.  ....
T Consensus         9 l~~~~~~~~~~~~~l~~vs~-----~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~~~G~i~~~g~~~~--~~~~   78 (192)
T cd03232           9 LNYTVPVKGGKRQLLNNISG-----YVKPGTLTALMGESGAGKTTLLDVLAGRKT---AGVITGEILINGRPLD--KNFQ   78 (192)
T ss_pred             eEEEecCCCCceEeEEccEE-----EEeCCcEEEEECCCCCCHHHHHHHHhCCCc---CCCcceEEEECCEehH--HHhh
Confidence            4556754   1345555554     224577899999999999999999997542   12678888 5665542  0000


Q ss_pred             HHHcccccccccccCcCccchHHHHHHHHHHhhHHHhhcCCceEEEchhH---HHHHHHHcc----CCCCCCC--CHHHH
Q psy8556          87 IEREITPHHLIDIIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTM---LYFKALRDG----INKLPPA--NLKLR  157 (298)
Q Consensus        87 ~e~~~v~~~l~~~~~~~e~~s~~~f~~~~~~~i~~i~~~~~~~IlvGGt~---~y~~~ll~~----~~~~p~~--d~~lr  157 (298)
                      .....+++.    ......+++.++...... +    .     -++||..   ...++++.+    +.|.|..  |+.-+
T Consensus        79 ~~i~~~~q~----~~~~~~~tv~~~l~~~~~-~----~-----~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~  144 (192)
T cd03232          79 RSTGYVEQQ----DVHSPNLTVREALRFSAL-L----R-----GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAA  144 (192)
T ss_pred             hceEEeccc----CccccCCcHHHHHHHHHH-H----h-----cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHH
Confidence            011111111    111223455555432211 1    0     4777766   355777765    3455643  66666


Q ss_pred             HHHHHHH
Q psy8556         158 TKFNIDI  164 (298)
Q Consensus       158 ~~l~~~~  164 (298)
                      ..+.+.+
T Consensus       145 ~~l~~~l  151 (192)
T cd03232         145 YNIVRFL  151 (192)
T ss_pred             HHHHHHH
Confidence            6555443

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.55  E-value=8.3e-07  Score=77.57  Aligned_cols=59  Identities=12%  Similarity=0.094  Sum_probs=43.9

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|++ ..++.+++.     .-.+|++++|+||||||||||++.|++..+     +++|+| +.|.++.
T Consensus         7 l~~~~~~-~~il~~~s~-----~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~v~~~g~~~~   66 (200)
T PRK13540          7 LDFDYHD-QPLLQQISF-----HLPAGGLLHLKGSNGAGKTTLLKLIAGLLN-----PEKGEILFERQSIK   66 (200)
T ss_pred             EEEEeCC-eeEEeeeeE-----EECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeeEEECCCccc
Confidence            3556654 345555555     224677999999999999999999998876     889998 5666654

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=98.55  E-value=6.2e-07  Score=80.59  Aligned_cols=58  Identities=17%  Similarity=0.071  Sum_probs=43.3

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDI   79 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i   79 (298)
                      .+..|++ ...+.++++     .-.+|++++|+||||||||||++.|++...     +++|+| +.|.++
T Consensus         8 l~~~~~~-~~il~~vsl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~   66 (242)
T PRK11124          8 INCFYGA-HQALFDITL-----DCPQGETLVLLGPSGAGKSSLLRVLNLLEM-----PRSGTLNIAGNHF   66 (242)
T ss_pred             eEEEECC-eeeEeeeee-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEec
Confidence            3556653 345555554     224678999999999999999999998776     789998 577665

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=98.54  E-value=7e-07  Score=81.74  Aligned_cols=60  Identities=22%  Similarity=0.249  Sum_probs=43.8

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      .+..|++ ..++.++++     .-.+|++++|+||||||||||++.|++.+.     +++|+| +.|.++..
T Consensus        13 l~~~~~~-~~il~~vsl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~   73 (269)
T PRK11831         13 VSFTRGN-RCIFDNISL-----TVPRGKITAIMGPSGIGKTTLLRLIGGQIA-----PDHGEILFDGENIPA   73 (269)
T ss_pred             eEEEECC-EEEEeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEccc
Confidence            3455643 345555554     224577899999999999999999998876     789998 57766643

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=98.54  E-value=4.6e-08  Score=86.55  Aligned_cols=60  Identities=15%  Similarity=0.188  Sum_probs=45.0

Q ss_pred             hcccCchh-hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQ-RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~-~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|+++ ...+.++++     .-++|++++|+||||||||||++.|++.+.     +++|+| +.|.++.
T Consensus         6 l~~~~~~~~~~il~~is~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~   67 (220)
T cd03263           6 LTKTYKKGTKPAVDDLSL-----NVYKGEIFGLLGHNGAGKTTTLKMLTGELR-----PTSGTAYINGYSIR   67 (220)
T ss_pred             eEEEeCCCCceeecceEE-----EEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEecc
Confidence            45667653 455666555     224577899999999999999999998876     789998 5676654

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.54  E-value=5e-07  Score=82.47  Aligned_cols=59  Identities=15%  Similarity=0.095  Sum_probs=41.4

Q ss_pred             hhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          17 QQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      +....++++++     .-++|++++|+||||||||||++.|++.++..--.+++|+| +.|.++.
T Consensus        19 ~~~~~l~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~   78 (261)
T PRK14263         19 GNFMAVRDSHV-----PIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVY   78 (261)
T ss_pred             CCEEEEeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEecc
Confidence            33445566555     22467799999999999999999999887510000378888 6777664

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=98.54  E-value=6.4e-08  Score=88.21  Aligned_cols=55  Identities=11%  Similarity=0.060  Sum_probs=43.6

Q ss_pred             hhhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556           9 DRDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY   74 (298)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy   74 (298)
                      ++.++.|+.+...+++++.      -.+|++++|+||||||||||++.|++.+.     +++|+|+
T Consensus         4 ~~~~~~y~~~~~~l~~i~~------i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~-----p~~G~I~   58 (255)
T cd03236           4 DEPVHRYGPNSFKLHRLPV------PREGQVLGLVGPNGIGKSTALKILAGKLK-----PNLGKFD   58 (255)
T ss_pred             cCcceeecCcchhhhcCCC------CCCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCCceEe
Confidence            4678889766555666542      35577899999999999999999999887     7888883

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK10908 cell division protein FtsE; Provisional

Probab=98.53  E-value=4.2e-08  Score=87.06  Aligned_cols=60  Identities=15%  Similarity=0.102  Sum_probs=45.5

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|+++...++++++     .-.+|++++|+||||||||||++.|++.++     +++|+| +.|.++.
T Consensus         7 l~~~~~~~~~~l~~vsl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~i~   67 (222)
T PRK10908          7 VSKAYLGGRQALQGVTF-----HMRPGEMAFLTGHSGAGKSTLLKLICGIER-----PSAGKIWFSGHDIT   67 (222)
T ss_pred             eEEEecCCCeEEeeeeE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEcc
Confidence            45667544556666655     224577899999999999999999998876     889998 5776664

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=98.53  E-value=7e-07  Score=81.80  Aligned_cols=41  Identities=29%  Similarity=0.271  Sum_probs=35.2

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+|++++|+||||||||||++.|++.+.     +++|+| +.|.++.
T Consensus        48 ~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~-----p~~G~i~i~g~~~~   89 (269)
T cd03294          48 REGEIFVIMGLSGSGKSTLLRCINRLIE-----PTSGKVLIDGQDIA   89 (269)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEcc
Confidence            5678999999999999999999998876     788988 5676654

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=98.53  E-value=5e-07  Score=81.92  Aligned_cols=59  Identities=22%  Similarity=0.237  Sum_probs=43.3

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|++ ...+.++++     .-++|++++|+||||||||||++.|++.+.     +++|+| +.|.++.
T Consensus         8 l~~~~~~-~~il~~is~-----~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~   67 (255)
T PRK11231          8 LTVGYGT-KRILNDLSL-----SLPTGKITALIGPNGCGKSTLLKCFARLLT-----PQSGTVFLGDKPIS   67 (255)
T ss_pred             EEEEECC-EEEEeeeee-----EEcCCcEEEEECCCCCCHHHHHHHHhCCcC-----CCCcEEEECCEEhH
Confidence            4556654 345555554     224577899999999999999999998776     788888 5665543

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=98.52  E-value=1.9e-08  Score=89.73  Aligned_cols=32  Identities=31%  Similarity=0.494  Sum_probs=27.2

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCC-------CeEeecCC
Q psy8556          39 KVAILGPTASGKSSVALKISEYIP-------CEIISIDS   70 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~-------~~iis~Ds   70 (298)
                      +|+|+||||||||||++.|++.+.       ..+++.|.
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~   39 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDG   39 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCc
Confidence            589999999999999999999873       34677777

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=98.52  E-value=2.3e-07  Score=91.79  Aligned_cols=74  Identities=12%  Similarity=0.198  Sum_probs=53.2

Q ss_pred             cccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCH--HH
Q psy8556          12 TETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSI--IE   88 (298)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~--~e   88 (298)
                      +-.||+|...+.+++.     +-++|+.++|+|+||||||||+..|++.+.     +++|.| .+|.+....++..  ..
T Consensus       327 ~~~y~~g~~~l~~l~~-----t~~~g~~talvG~SGaGKSTLl~lL~G~~~-----~~~G~I~vng~~l~~l~~~~~~k~  396 (559)
T COG4988         327 SFRYPDGKPALSDLNL-----TIKAGQLTALVGASGAGKSTLLNLLLGFLA-----PTQGEIRVNGIDLRDLSPEAWRKQ  396 (559)
T ss_pred             EEecCCCCcccCCcee-----EecCCcEEEEECCCCCCHHHHHHHHhCcCC-----CCCceEEECCccccccCHHHHHhH
Confidence            4456666555555444     336677899999999999999999999887     788888 6888776555433  34


Q ss_pred             Hcccccc
Q psy8556          89 REITPHH   95 (298)
Q Consensus        89 ~~~v~~~   95 (298)
                      +..++|+
T Consensus       397 i~~v~Q~  403 (559)
T COG4988         397 ISWVSQN  403 (559)
T ss_pred             eeeeCCC
Confidence            4556654

>PLN02772 guanylate kinase

Probab=98.52  E-value=1.6e-07  Score=89.94  Aligned_cols=142  Identities=17%  Similarity=0.172  Sum_probs=85.6

Q ss_pred             hcccCchhhhhhcc-ccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHH
Q psy8556          11 DTETDPQQRQLTAD-FRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIER   89 (298)
Q Consensus        11 ~~~~~~~~~~~~~~-~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~   89 (298)
                      +|..-.+|+.+++. ....+.+......++++|+||||||||||++.|...++..        +......+|.+|.+.|.
T Consensus       108 ~t~~~~~~~~~~~~eV~~~~~~~~~~~~k~iVlsGPSGvGKsTL~~~L~~~~p~~--------~~~~vshTTR~pR~gE~  179 (398)
T PLN02772        108 DTPFVREQKKLLGTEVVAWSKGVRGNAEKPIVISGPSGVGKGTLISMLMKEFPSM--------FGFSVSHTTRAPREMEK  179 (398)
T ss_pred             CCHHHHhhcccccceeeecccCCCCCCCcEEEEECCCCCCHHHHHHHHhhhcccc--------ccccccccCCCCccccc
Confidence            34444566554443 3335555555567899999999999999999998765411        12234567888888888


Q ss_pred             cccccccccccCcCccchH----------HHHHHHHHHhhHHHhhcCCceEE---EchhHHHHHHHHccC--CCCCCCCH
Q psy8556          90 EITPHHLIDIIEPTKSYSV----------IQFCEDALFSIKNILKKKKLPLL---VGGTMLYFKALRDGI--NKLPPANL  154 (298)
Q Consensus        90 ~~v~~~l~~~~~~~e~~s~----------~~f~~~~~~~i~~i~~~~~~~Il---vGGt~~y~~~ll~~~--~~~p~~d~  154 (298)
                      .+..+|+.+...+......          +.++....+.+..+.+.|+.+|+   +.|...+.+..+..+  +..|++..
T Consensus       180 dG~dY~Fvs~eeFe~~i~~g~FlE~~e~~Gn~YGTsk~~V~~vl~~Gk~vILdLD~qGar~Lr~~~l~~v~IFI~PPSlE  259 (398)
T PLN02772        180 DGVHYHFTERSVMEKEIKDGKFLEFASVHGNLYGTSIEAVEVVTDSGKRCILDIDVQGARSVRASSLEAIFIFICPPSME  259 (398)
T ss_pred             CCceEeeCCHHHHHHHHHhCccceeeeecCccccccHHHHHHHHHhCCcEEEeCCHHHHHHHHHhcCCeEEEEEeCCCHH
Confidence            8876776653222111111          22333446677788888998886   345544444444332  22366656


Q ss_pred             HHHHHH
Q psy8556         155 KLRTKF  160 (298)
Q Consensus       155 ~lr~~l  160 (298)
                      ++++|+
T Consensus       260 eLe~RL  265 (398)
T PLN02772        260 ELEKRL  265 (398)
T ss_pred             HHHHHH
Confidence            666554

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=98.52  E-value=3.7e-07  Score=81.93  Aligned_cols=58  Identities=26%  Similarity=0.217  Sum_probs=43.1

Q ss_pred             cccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          12 TETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      +..|+. ..++.+++.     .-.+|++++|+||||||||||++.|++.+.     +++|+| +.|.++.
T Consensus         7 ~~~~~~-~~il~~is~-----~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~i~i~g~~~~   65 (237)
T TIGR00968         7 SKRFGS-FQALDDVNL-----EVPTGSLVALLGPSGSGKSTLLRIIAGLEQ-----PDSGRIRLNGQDAT   65 (237)
T ss_pred             EEEECC-eeeeeeEEE-----EEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEEcC
Confidence            455653 345666655     224577899999999999999999998775     788888 5776654

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=98.52  E-value=5.5e-08  Score=85.66  Aligned_cols=59  Identities=19%  Similarity=0.150  Sum_probs=43.4

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccC
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDI   79 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i   79 (298)
                      ..+..|++ ...+.++++     .-.+|++++|+||||||||||++.|++.+.     +++|+| +.|.++
T Consensus         4 ~l~~~~~~-~~~l~~isl-----~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~   63 (213)
T cd03235           4 DLTVSYGG-HPVLEDVSF-----EVKPGEFLAIVGPNGAGKSTLLKAILGLLK-----PTSGSIRVFGKPL   63 (213)
T ss_pred             cceeEECC-EEeeeccee-----EEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCCEEEECCccH
Confidence            34566754 345555554     224577899999999999999999998776     788988 566544

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=98.51  E-value=2.7e-07  Score=95.09  Aligned_cols=43  Identities=30%  Similarity=0.347  Sum_probs=37.9

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTN   82 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~   82 (298)
                      ++|+.++|+||||||||||++.|++.+.     +++|+| +.|.++..-
T Consensus       477 ~~Ge~vaIvG~sGsGKSTLlklL~gl~~-----p~~G~I~idg~~i~~~  520 (686)
T TIGR03797       477 EPGEFVAIVGPSGSGKSTLLRLLLGFET-----PESGSVFYDGQDLAGL  520 (686)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCEEcCcC
Confidence            6788999999999999999999999887     899999 688887643

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=98.50  E-value=1e-07  Score=87.77  Aligned_cols=32  Identities=19%  Similarity=0.452  Sum_probs=26.9

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCC---CeEeecCC
Q psy8556          39 KVAILGPTASGKSSVALKISEYIP---CEIISIDS   70 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~---~~iis~Ds   70 (298)
                      +++|+|+||||||||++.|++.++   +.+++.|.
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd   35 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDD   35 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcc
Confidence            589999999999999999999875   44666664

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=98.50  E-value=1.5e-07  Score=84.49  Aligned_cols=60  Identities=22%  Similarity=0.181  Sum_probs=44.4

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      .+..|++ ...+.++++     .-.+|++++|+||||||||||++.|++.+.     +++|+| +.|.++..
T Consensus         8 l~~~~~~-~~il~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~   68 (239)
T cd03296           8 VSKRFGD-FVALDDVSL-----DIPSGELVALLGPSGSGKTTLLRLIAGLER-----PDSGTILFGGEDATD   68 (239)
T ss_pred             EEEEECC-EEeeeeeeE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECCc
Confidence            4556654 345555544     224577999999999999999999998876     789998 57766543

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=98.50  E-value=8.9e-07  Score=79.47  Aligned_cols=40  Identities=20%  Similarity=0.262  Sum_probs=33.6

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDI   79 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i   79 (298)
                      .+|++++|+||||||||||++.|++.+.     +++|+| +.|.++
T Consensus        45 ~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~~   85 (236)
T cd03267          45 EKGEIVGFIGPNGAGKTTTLKILSGLLQ-----PTSGEVRVAGLVP   85 (236)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEECCEEc
Confidence            4577899999999999999999998776     788988 455544

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.50  E-value=4.3e-07  Score=87.96  Aligned_cols=42  Identities=24%  Similarity=0.270  Sum_probs=36.7

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      ++|++++|+||||||||||++.|++.+.     +++|+| +.|.++..
T Consensus        52 ~~Gei~~LvG~NGsGKSTLLr~I~Gl~~-----p~sG~I~i~G~~i~~   94 (400)
T PRK10070         52 EEGEIFVIMGLSGSGKSTMVRLLNRLIE-----PTRGQVLIDGVDIAK   94 (400)
T ss_pred             cCCCEEEEECCCCchHHHHHHHHHcCCC-----CCCCEEEECCEECCc
Confidence            5688999999999999999999998876     889999 57777754

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=98.49  E-value=7.4e-08  Score=85.51  Aligned_cols=61  Identities=18%  Similarity=0.208  Sum_probs=45.1

Q ss_pred             hcccCchhh---hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          11 DTETDPQQR---QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        11 ~~~~~~~~~---~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      ++..|++..   ..+.+++.     .-++|++++|+||||||||||++.|++.+.     +++|+| +.|.++..
T Consensus         7 v~~~~~~~~~~~~~l~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~   71 (228)
T cd03257           7 LSVSFPTGGGSVKALDDVSF-----SIKKGETLGLVGESGSGKSTLARAILGLLK-----PTSGSIIFDGKDLLK   71 (228)
T ss_pred             eeEeccCCCcceeeecCcee-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEccc
Confidence            456676542   45555554     224577899999999999999999998776     889998 57766653

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=98.49  E-value=3.3e-08  Score=85.29  Aligned_cols=91  Identities=20%  Similarity=0.240  Sum_probs=55.8

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccchHHHH----
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQF----  111 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~~~f----  111 (298)
                      ++++++|+||+|||||||+..|...++..        +......+|.+|...|..+..+|+++-..+......++|    
T Consensus         1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~~~--------~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~   72 (183)
T PF00625_consen    1 KRRPIVLVGPSGSGKSTLAKRLIQEFPDK--------FGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYG   72 (183)
T ss_dssp             SSSEEEEESSTTSSHHHHHHHHHHHSTTT--------EEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcccc--------cccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEe
Confidence            46789999999999999999999887622        222334467788888888888877654322211111111    


Q ss_pred             ------HHHHHHhhHHHhhcCCceEEEch
Q psy8556         112 ------CEDALFSIKNILKKKKLPLLVGG  134 (298)
Q Consensus       112 ------~~~~~~~i~~i~~~~~~~IlvGG  134 (298)
                            +......+..+...|+.+|+...
T Consensus        73 ~~~g~~YGt~~~~i~~~~~~gk~~il~~~  101 (183)
T PF00625_consen   73 EYDGNYYGTSKSAIDKVLEEGKHCILDVD  101 (183)
T ss_dssp             EETTEEEEEEHHHHHHHHHTTTEEEEEET
T ss_pred             eecchhhhhccchhhHhhhcCCcEEEEcc
Confidence                  11123456677778888877543

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=98.48  E-value=3.9e-07  Score=92.01  Aligned_cols=42  Identities=26%  Similarity=0.391  Sum_probs=37.1

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      ++|+.++|+||||||||||++.|++.+.     +++|+| +.|.++..
T Consensus       367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~~-----p~~G~I~i~g~~i~~  409 (582)
T PRK11176        367 PAGKTVALVGRSGSGKSTIANLLTRFYD-----IDEGEILLDGHDLRD  409 (582)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhccC-----CCCceEEECCEEhhh
Confidence            6788999999999999999999999887     899999 57777654

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=98.48  E-value=5.1e-07  Score=85.35  Aligned_cols=42  Identities=19%  Similarity=0.328  Sum_probs=36.5

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      .+|++++|+|+||||||||++.|++.+.     +++|+| |.|.++..
T Consensus        45 ~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~-----p~~G~I~~~G~~i~~   87 (331)
T PRK15079         45 YEGETLGVVGESGCGKSTFARAIIGLVK-----ATDGEVAWLGKDLLG   87 (331)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCC-----CCCcEEEECCEECCc
Confidence            5678999999999999999999998876     789999 68877654

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=98.48  E-value=2.7e-07  Score=95.40  Aligned_cols=42  Identities=21%  Similarity=0.317  Sum_probs=36.9

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      ++|+.++|+||||||||||++.|++.+.     +++|+| +.|.++..
T Consensus       498 ~~G~~vaIvG~SGsGKSTLlklL~gl~~-----p~~G~I~idg~~i~~  540 (708)
T TIGR01193       498 KMNSKTTIVGMSGSGKSTLAKLLVGFFQ-----ARSGEILLNGFSLKD  540 (708)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhccCC-----CCCcEEEECCEEHHH
Confidence            6678899999999999999999999887     899999 57877653

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=98.48  E-value=3e-07  Score=93.10  Aligned_cols=41  Identities=27%  Similarity=0.373  Sum_probs=36.6

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      ++|+.++|+|+||||||||++.|++.+.     +++|+| +.|.++.
T Consensus       365 ~~Ge~iaIvG~SGsGKSTLl~lL~gl~~-----p~~G~I~idg~~i~  406 (592)
T PRK10790        365 PSRGFVALVGHTGSGKSTLASLLMGYYP-----LTEGEIRLDGRPLS  406 (592)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCceEEECCEEhh
Confidence            6788999999999999999999999887     889998 5777765

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=98.48  E-value=8.2e-08  Score=88.07  Aligned_cols=60  Identities=17%  Similarity=0.109  Sum_probs=44.9

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccC
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDI   79 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i   79 (298)
                      ..+..|+++...+.++++     .-.+|++++|+||||||||||++.|++.+.     +++|+| +.|.++
T Consensus        11 ~l~~~~~~~~~il~~vsl-----~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i   71 (272)
T PRK15056         11 DVTVTWRNGHTALRDASF-----TVPGGSIAALVGVNGSGKSTLFKALMGFVR-----LASGKISILGQPT   71 (272)
T ss_pred             eEEEEecCCcEEEEeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEh
Confidence            346677755556666655     223577899999999999999999998776     788888 566554

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=98.48  E-value=1.2e-06  Score=84.86  Aligned_cols=60  Identities=13%  Similarity=0.164  Sum_probs=45.5

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      .+..|++ ...+.++++     .-++|++++|+||||||||||++.|++.+.     +++|.| +.|.++..
T Consensus         9 ls~~y~~-~~vL~~vs~-----~i~~Geiv~liGpNGaGKSTLLk~LaGll~-----p~sG~I~l~G~~i~~   69 (402)
T PRK09536          9 LSVEFGD-TTVLDGVDL-----SVREGSLVGLVGPNGAGKTTLLRAINGTLT-----PTAGTVLVAGDDVEA   69 (402)
T ss_pred             EEEEECC-EEEEEeeEE-----EECCCCEEEEECCCCchHHHHHHHHhcCCC-----CCCcEEEECCEEcCc
Confidence            4566764 455666665     224677999999999999999999998876     889998 57766653

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.47  E-value=7.5e-08  Score=88.51  Aligned_cols=61  Identities=16%  Similarity=0.180  Sum_probs=46.6

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      ..+..|+++...+.|+++     .-.+|++++|+||||||||||++.|++.+.     +++|+| +.|.++.
T Consensus         9 ~l~~~~~~~~~~l~~isl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~   70 (274)
T PRK13647          9 DLHFRYKDGTKALKGLSL-----SIPEGSKTALLGPNGAGKSTLLLHLNGIYL-----PQRGRVKVMGREVN   70 (274)
T ss_pred             EEEEEeCCCCeeeeeEEE-----EEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCceEEEECCEECC
Confidence            456677654456666665     224577899999999999999999998876     889999 6777664

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=98.47  E-value=1.5e-06  Score=78.61  Aligned_cols=64  Identities=14%  Similarity=-0.008  Sum_probs=43.6

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|++ ..++.++++     .-.+|++++|+||||||||||++.|++..+..-..+++|+| +.|.++.
T Consensus        12 l~~~~~~-~~il~~is~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~   76 (253)
T PRK14242         12 LSFFYGD-FQALHDISL-----EFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIY   76 (253)
T ss_pred             eEEEECC-eeeecceeE-----EEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcc
Confidence            4556653 345556555     22457789999999999999999999875311111478888 5776664

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=98.47  E-value=1.7e-07  Score=96.84  Aligned_cols=42  Identities=21%  Similarity=0.245  Sum_probs=37.0

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      ++|+.++|+||||||||||++.|++.+.     +++|.| +.|.++..
T Consensus       503 ~~Ge~vaIvG~sGsGKSTLlklL~gl~~-----p~~G~I~idg~~i~~  545 (710)
T TIGR03796       503 QPGQRVALVGGSGSGKSTIAKLVAGLYQ-----PWSGEILFDGIPREE  545 (710)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEeHHH
Confidence            6788999999999999999999999887     889998 67877653

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=98.46  E-value=7e-07  Score=78.16  Aligned_cols=63  Identities=17%  Similarity=0.191  Sum_probs=44.4

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTN   82 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~   82 (298)
                      .+..|++ ..++.++++     .-.+|++++|+||||||||||++.|++...   ..+++|+| +.|.++...
T Consensus         6 l~~~~~~-~~~l~~is~-----~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~p~~G~i~~~g~~~~~~   69 (200)
T cd03217           6 LHVSVGG-KEILKGVNL-----TIKKGEVHALMGPNGSGKSTLAKTIMGHPK---YEVTEGEILFKGEDITDL   69 (200)
T ss_pred             EEEEeCC-EEeeeccce-----EECCCcEEEEECCCCCCHHHHHHHHhCCCc---CCCCccEEEECCEECCcC
Confidence            4556653 345555554     224577899999999999999999998731   22788988 577766543

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=98.46  E-value=9.2e-08  Score=83.66  Aligned_cols=59  Identities=20%  Similarity=0.182  Sum_probs=44.0

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|++ ...+.++++     .-.+|++++|+||||||||||++.|++.+.     +++|+| +.|.++.
T Consensus         4 l~~~~~~-~~~l~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~   63 (206)
T TIGR03608         4 ISKKFGD-KIILDDLNL-----TIEKGKMYAIIGESGSGKSTLLNIIGLLEK-----FDSGQVYLNGKETP   63 (206)
T ss_pred             eEEEECC-EEEEeceEE-----EEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEcc
Confidence            4566764 345666655     223577899999999999999999998876     889998 5666643

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=98.46  E-value=1.1e-06  Score=79.77  Aligned_cols=62  Identities=18%  Similarity=0.176  Sum_probs=42.3

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|  +...+.++++     .-.+|++++|+||||||||||++.|++...... .+++|+| +.|.++.
T Consensus        10 l~~~~--~~~il~~vsl-----~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~-~~~~G~i~~~g~~i~   72 (254)
T PRK10418         10 IALQA--AQPLVHGVSL-----TLQRGRVLALVGGSGSGKSLTCAAALGILPAGV-RQTAGRVLLDGKPVA   72 (254)
T ss_pred             eEEEe--ccceecceEE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-CCcCCEEEECCeecc
Confidence            34556  2344555554     224577899999999999999999998876110 0188998 5676653

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.46  E-value=1.8e-06  Score=78.02  Aligned_cols=64  Identities=22%  Similarity=0.101  Sum_probs=43.0

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|++ ...+.++++     .-++|++++|+||||||||||++.|++.+...--.+++|+| +.|.++.
T Consensus         9 l~~~~~~-~~~l~~is~-----~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~   73 (250)
T PRK14247          9 LKVSFGQ-VEVLDGVNL-----EIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIF   73 (250)
T ss_pred             eEEEECC-eeeeeccee-----EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECC
Confidence            4556654 334555544     22467799999999999999999999876410000368888 5777664

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=98.46  E-value=9.7e-07  Score=81.33  Aligned_cols=61  Identities=18%  Similarity=0.176  Sum_probs=45.8

Q ss_pred             hhcccCchh-----hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          10 RDTETDPQQ-----RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        10 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      ..+..|+++     ...+.++++     .-.+|++++|+||||||||||++.|++.+.     +++|.| +.|.++.
T Consensus         9 ~l~~~~~~~~~~~~~~vl~~vs~-----~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~i~g~~i~   75 (280)
T PRK13633          9 NVSYKYESNEESTEKLALDDVNL-----EVKKGEFLVILGRNGSGKSTIAKHMNALLI-----PSEGKVYVDGLDTS   75 (280)
T ss_pred             eeEEEcCCCCCCCCcceeeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEecc
Confidence            356677643     346666665     223577899999999999999999998876     889998 5776664

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=98.46  E-value=5.5e-07  Score=89.70  Aligned_cols=61  Identities=11%  Similarity=0.100  Sum_probs=45.7

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      ..++.|++ ..+++++++     .-.+|++++|+||||||||||++.|++.+.     +++|.| +.|.++..
T Consensus        10 ~l~~~~~~-~~il~~vs~-----~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~i~~   71 (510)
T PRK09700         10 GIGKSFGP-VHALKSVNL-----TVYPGEIHALLGENGAGKSTLMKVLSGIHE-----PTKGTITINNINYNK   71 (510)
T ss_pred             eeEEEcCC-eEEeeeeeE-----EEcCCcEEEEECCCCCCHHHHHHHHcCCcC-----CCccEEEECCEECCC
Confidence            34566753 345666666     223577899999999999999999998776     789998 57777653

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=98.46  E-value=8.5e-08  Score=87.24  Aligned_cols=59  Identities=15%  Similarity=0.228  Sum_probs=44.1

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|++ ..++.++++     .-.+|++++|+||||||||||++.|++.+.     +++|+| +.|.++.
T Consensus         7 l~~~~~~-~~il~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~   66 (255)
T PRK11248          7 LYADYGG-KPALEDINL-----TLESGELLVVLGPSGCGKTTLLNLIAGFVP-----YQHGSITLDGKPVE   66 (255)
T ss_pred             EEEEeCC-eeeEeeeeE-----EECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECC
Confidence            3556654 345566555     224577899999999999999999998876     789998 5776654

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=98.45  E-value=3.7e-07  Score=92.04  Aligned_cols=61  Identities=25%  Similarity=0.278  Sum_probs=46.0

Q ss_pred             ccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe-ccccCCCCC
Q psy8556          13 ETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY-CDMDIGTNK   83 (298)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy-~g~~i~t~k   83 (298)
                      =.||.+...++|+++     .-++|+.++|+|||||||||+++.|++.++     +++|+|+ +|.++..-.
T Consensus       336 f~y~~~~~vl~~is~-----~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~-----~~~G~I~idg~dI~~i~  397 (567)
T COG1132         336 FSYPGKKPVLKDISF-----SIEPGEKVAIVGPSGSGKSTLIKLLLRLYD-----PTSGEILIDGIDIRDIS  397 (567)
T ss_pred             EEcCCCCccccCceE-----EEcCCCEEEEECCCCCCHHHHHHHHhccCC-----CCCCeEEECCEehhhcC
Confidence            345544555555555     235677899999999999999999999988     7889985 688876433

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.45  E-value=1.6e-06  Score=78.85  Aligned_cols=64  Identities=16%  Similarity=0.052  Sum_probs=42.7

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|++ ...+.++++     .-.+|++++|+||||||||||++.|++......-.+++|+| +.|.++.
T Consensus        18 l~~~~~~-~~il~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~   82 (258)
T PRK14268         18 LNLWYGE-KQALKNVSM-----QIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIY   82 (258)
T ss_pred             eEEEeCC-eeeeeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcc
Confidence            3455653 345555554     22457789999999999999999999876410000268888 5676654

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=98.45  E-value=7.7e-07  Score=79.77  Aligned_cols=59  Identities=27%  Similarity=0.255  Sum_probs=43.3

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      .+..|++.  .+.+++.     .-.+|++++|+||||||||||++.|++.+.     +++|.| +.|.++..
T Consensus         6 l~~~~~~~--~l~~is~-----~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~-----p~~G~v~i~g~~~~~   65 (235)
T cd03299           6 LSKDWKEF--KLKNVSL-----EVERGDYFVILGPTGSGKSVLLETIAGFIK-----PDSGKILLNGKDITN   65 (235)
T ss_pred             EEEEeCCc--eeeeeEE-----EEcCCcEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEECCEEcCc
Confidence            34556542  3444444     224678999999999999999999998876     888998 57776654

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=98.45  E-value=8.7e-07  Score=88.38  Aligned_cols=60  Identities=18%  Similarity=0.169  Sum_probs=44.8

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      .++.|++ ...++++++     .-.+|++++|+||||||||||++.|++.+.     +++|.| +.|.++..
T Consensus        17 l~~~~~~-~~il~~vsl-----~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~   77 (510)
T PRK15439         17 ISKQYSG-VEVLKGIDF-----TLHAGEVHALLGGNGAGKSTLMKIIAGIVP-----PDSGTLEIGGNPCAR   77 (510)
T ss_pred             EEEEeCC-ceeeeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECCC
Confidence            4556653 345666665     124577899999999999999999998876     889998 57766643

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.45  E-value=2e-07  Score=83.35  Aligned_cols=59  Identities=25%  Similarity=0.209  Sum_probs=44.5

Q ss_pred             cccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          12 TETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      ++.| +.+..++++.+     .=++|++++|+||||||||||++.+.+++.     +|+|.| ..|.++..
T Consensus        15 ~~~f-G~~~Ild~v~l-----~V~~Gei~~iiGgSGsGKStlLr~I~Gll~-----P~~GeI~i~G~~i~~   74 (263)
T COG1127          15 TKSF-GDRVILDGVDL-----DVPRGEILAILGGSGSGKSTLLRLILGLLR-----PDKGEILIDGEDIPQ   74 (263)
T ss_pred             eeec-CCEEEecCcee-----eecCCcEEEEECCCCcCHHHHHHHHhccCC-----CCCCeEEEcCcchhc
Confidence            3344 33445555554     225688999999999999999999998887     999999 58877653

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=98.45  E-value=1.7e-06  Score=78.62  Aligned_cols=59  Identities=14%  Similarity=0.072  Sum_probs=43.4

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|++ ...+.++++     .-.+|++++|+||||||||||++.|++.+.     +++|+| +.|.++.
T Consensus        11 l~~~~~~-~~~l~~is~-----~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~   70 (257)
T PRK10619         11 LHKRYGE-HEVLKGVSL-----QANAGDVISIIGSSGSGKSTFLRCINFLEK-----PSEGSIVVNGQTIN   70 (257)
T ss_pred             eEEEECC-EEEEeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEEcc
Confidence            3555653 345555554     224677899999999999999999998876     788988 5776553

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=98.44  E-value=4.3e-07  Score=80.35  Aligned_cols=60  Identities=20%  Similarity=0.210  Sum_probs=44.2

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      .+..|++ ..++.++++     .-.+|++++|+||||||||||++.|++.+.     +++|+| +.|.++..
T Consensus         6 l~~~~~~-~~~l~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~   66 (222)
T cd03224           6 LNAGYGK-SQILFGVSL-----TVPEGEIVALLGRNGAGKTTLLKTIMGLLP-----PRSGSIRFDGRDITG   66 (222)
T ss_pred             EEeecCC-eeEeeeeeE-----EEcCCeEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEcCC
Confidence            4556754 245555544     224578999999999999999999998876     789998 57766543

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=98.44  E-value=2.3e-07  Score=84.50  Aligned_cols=59  Identities=29%  Similarity=0.255  Sum_probs=44.0

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|++ ..++.++++     .-.+|++++|+||||||||||++.|++.+.     +++|+| +.|.++.
T Consensus         8 l~~~~~~-~~il~~is~-----~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----p~~G~i~~~g~~~~   67 (258)
T PRK13548          8 LSVRLGG-RTLLDDVSL-----TLRPGEVVAILGPNGAGKSTLLRALSGELS-----PDSGEVRLNGRPLA   67 (258)
T ss_pred             EEEEeCC-eeeeeeeeE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCEEcc
Confidence            4556764 345666655     224577899999999999999999998776     789998 5666553

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.43  E-value=1.1e-07  Score=87.39  Aligned_cols=61  Identities=16%  Similarity=0.224  Sum_probs=46.9

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      ..++.|+++...+.++++     .-.+|++++|+||||||||||++.|++.+.     +++|.| +.|.++.
T Consensus         8 ~l~~~~~~~~~~l~~vsl-----~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~   69 (277)
T PRK13652          8 DLCYSYSGSKEALNNINF-----IAPRNSRIAVIGPNGAGKSTLFRHFNGILK-----PTSGSVLIRGEPIT   69 (277)
T ss_pred             EEEEEeCCCCceeeEeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECC
Confidence            456778755556666665     223577899999999999999999998876     889998 5777664

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=98.43  E-value=1.4e-07  Score=84.65  Aligned_cols=61  Identities=21%  Similarity=0.311  Sum_probs=45.2

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      ..+..|++ ..++.++++     .-++|++++|+||||||||||++.|++.+.     +++|+| +.|.++..
T Consensus         8 ~l~~~~~~-~~~l~~~sl-----~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~   69 (241)
T PRK10895          8 NLAKAYKG-RRVVEDVSL-----TVNSGEIVGLLGPNGAGKTTTFYMVVGIVP-----RDAGNIIIDDEDISL   69 (241)
T ss_pred             CcEEEeCC-EEEEeeeeE-----EEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCC
Confidence            34566754 345555555     224577899999999999999999998876     889998 57766643

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=98.43  E-value=3.9e-07  Score=90.98  Aligned_cols=42  Identities=17%  Similarity=0.330  Sum_probs=36.9

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      ++|+.++|+||||||||||++.|++.++     +++|+| +.|.++..
T Consensus       346 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~-----~~~G~I~~~g~~i~~  388 (529)
T TIGR02857       346 PPGERVALVGPSGAGKSTLLNLLLGFVD-----PTEGSIAVNGVPLAD  388 (529)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEehhh
Confidence            5778999999999999999999999887     889999 57777654

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=98.43  E-value=1.7e-06  Score=77.90  Aligned_cols=61  Identities=16%  Similarity=0.198  Sum_probs=42.7

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|++ ...+.+++.     .-++|++++|+||||||||||++.|++...   ..+++|.| +.|.++.
T Consensus         7 l~~~~~~-~~~l~~isl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~G~i~~~g~~~~   68 (248)
T PRK09580          7 LHVSVED-KAILRGLNL-----EVRPGEVHAIMGPNGSGKSTLSATLAGRED---YEVTGGTVEFKGKDLL   68 (248)
T ss_pred             EEEEeCC-eeeeeccee-----EEcCCCEEEEECCCCCCHHHHHHHHcCCcc---CCCCceEEEECCCccc
Confidence            3556664 345555554     224577899999999999999999998731   12778888 4666654

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=98.43  E-value=7.3e-08  Score=89.37  Aligned_cols=37  Identities=27%  Similarity=0.345  Sum_probs=30.1

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHhhCC-------CeEeecCC
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISEYIP-------CEIISIDS   70 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~-------~~iis~Ds   70 (298)
                      .+.+.+|+|+|||||||||+++.|.+.+.       ..+++.|.
T Consensus        59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~  102 (290)
T TIGR00554        59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDG  102 (290)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccc
Confidence            35688999999999999999999987763       34567776

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=98.42  E-value=1.3e-07  Score=80.51  Aligned_cols=55  Identities=24%  Similarity=0.294  Sum_probs=41.5

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY   74 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy   74 (298)
                      ..+..|+++..++.+++.     .-.+|++++|+||||||||||++.|++.+.     +++|+|+
T Consensus         5 ~~~~~~~~~~~~l~~i~l-----~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~   59 (166)
T cd03223           5 NLSLATPDGRVLLKDLSF-----EIKPGDRLLITGPSGTGKSSLFRALAGLWP-----WGSGRIG   59 (166)
T ss_pred             EEEEEcCCCCeeeecCeE-----EECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEE
Confidence            345677655555555554     224577899999999999999999998876     7888884

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=98.42  E-value=1.7e-07  Score=83.82  Aligned_cols=60  Identities=27%  Similarity=0.292  Sum_probs=44.5

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|+++...+.++++     .-.+|++++|+||||||||||++.|++..+     +++|.| +.|.++.
T Consensus         6 l~~~~~~~~~~l~~i~~-----~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~v~~~g~~~~   66 (236)
T cd03253           6 VTFAYDPGRPVLKDVSF-----TIPAGKKVAIVGPSGSGKSTILRLLFRFYD-----VSSGSILIDGQDIR   66 (236)
T ss_pred             EEEEeCCCCceeeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCCEEEECCEEhh
Confidence            35567655556666655     123567899999999999999999998776     888988 5666554

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.42  E-value=2.1e-06  Score=78.62  Aligned_cols=63  Identities=17%  Similarity=0.085  Sum_probs=41.9

Q ss_pred             cccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          12 TETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      +..|++ ...+.++++     .-.+|++++|+||||||||||++.|++.+....-.+++|.| +.|.++.
T Consensus        20 ~~~~~~-~~il~~is~-----~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~   83 (269)
T PRK14259         20 TISYGT-FEAVKNVFC-----DIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLY   83 (269)
T ss_pred             EEEECC-EEEEcceEE-----EEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence            445543 334555544     22457789999999999999999999875411011478888 5666653

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=98.42  E-value=6e-07  Score=78.19  Aligned_cols=35  Identities=31%  Similarity=0.490  Sum_probs=30.9

Q ss_pred             EEEEECCCchhHHHHHHHHHhhC-CCeEeecCCceEec
Q psy8556          39 KVAILGPTASGKSSVALKISEYI-PCEIISIDSALVYC   75 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l-~~~iis~Ds~qvy~   75 (298)
                      +|+|.|++||||||+++.|+..+ +..+|+.|+  +|.
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Dd--f~~   36 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDD--FFK   36 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCCeEEcccc--ccC
Confidence            58999999999999999999998 578899997  554

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.42  E-value=6.5e-07  Score=78.91  Aligned_cols=74  Identities=15%  Similarity=0.129  Sum_probs=48.1

Q ss_pred             cccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCC-eEeecCCceE-eccccCCCCCCCHHHH
Q psy8556          12 TETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPC-EIISIDSALV-YCDMDIGTNKPSIIER   89 (298)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~-~iis~Ds~qv-y~g~~i~t~kp~~~e~   89 (298)
                      -..|++..+.+.+++.   .-  ++.++.+|+||||||||||++++-+.... +-... .|.| |.|.+|-..+.+..++
T Consensus        13 l~~yYg~~~aL~~i~l---~i--~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~-~G~v~~~g~ni~~~~~d~~~l   86 (253)
T COG1117          13 LNLYYGDKHALKDINL---DI--PKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARV-EGEVLLDGKNIYDPKVDVVEL   86 (253)
T ss_pred             eeEEECchhhhccCce---ec--cCCceEEEECCCCcCHHHHHHHHHhhcccCcCceE-EEEEEECCeeccCCCCCHHHH
Confidence            3455666666666554   11  44568999999999999999999765431 11111 3566 7888887666555555


Q ss_pred             cc
Q psy8556          90 EI   91 (298)
Q Consensus        90 ~~   91 (298)
                      +.
T Consensus        87 Rr   88 (253)
T COG1117          87 RR   88 (253)
T ss_pred             HH
Confidence            43

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=98.41  E-value=2.3e-07  Score=82.59  Aligned_cols=62  Identities=16%  Similarity=0.156  Sum_probs=45.7

Q ss_pred             hcccCchhh---hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCC
Q psy8556          11 DTETDPQQR---QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTN   82 (298)
Q Consensus        11 ~~~~~~~~~---~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~   82 (298)
                      .+..|+.+.   ..+.++++     .-.+|++++|+||||||||||++.|++.+.     +++|+| +.|.++...
T Consensus        12 l~~~~~~~~~~~~~l~~~s~-----~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~~~~~   77 (228)
T PRK10584         12 LKKSVGQGEHELSILTGVEL-----VVKRGETIALIGESGSGKSTLLAILAGLDD-----GSSGEVSLVGQPLHQM   77 (228)
T ss_pred             eEEEccCCCcceEEEeccEE-----EEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCeeEEECCEEcccC
Confidence            456676532   24555554     224678999999999999999999998876     889998 577766543

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.41  E-value=1.3e-07  Score=87.01  Aligned_cols=61  Identities=21%  Similarity=0.196  Sum_probs=45.8

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      ..+..|+++...+.++++     .-.+|++++|+||||||||||++.|++.++     +++|+| +.|.++.
T Consensus         6 ~l~~~~~~~~~~l~~vsl-----~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~~~   67 (275)
T PRK13639          6 DLKYSYPDGTEALKGINF-----KAEKGEMVALLGPNGAGKSTLFLHFNGILK-----PTSGEVLIKGEPIK   67 (275)
T ss_pred             EEEEEeCCCCeeeeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCccEEEECCEECc
Confidence            345667644445666655     224577899999999999999999998776     889999 6777663

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=98.41  E-value=2e-07  Score=83.00  Aligned_cols=60  Identities=18%  Similarity=0.261  Sum_probs=44.0

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|+.+..++.++++     .-.+|++++|+||||||||||++.|++.++     +++|+| +.|.++.
T Consensus         8 l~~~~~~~~~~l~~isl-----~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~   68 (229)
T cd03254           8 VNFSYDEKKPVLKDINF-----SIKPGETVAIVGPTGAGKTTLINLLMRFYD-----PQKGQILIDGIDIR   68 (229)
T ss_pred             EEEecCCCCccccceEE-----EEcCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCCEEEECCEeHH
Confidence            35567644446666665     224567899999999999999999998876     788988 4555543

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.41  E-value=1.9e-07  Score=81.34  Aligned_cols=32  Identities=44%  Similarity=0.512  Sum_probs=27.6

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCC---CeEeecCC
Q psy8556          39 KVAILGPTASGKSSVALKISEYIP---CEIISIDS   70 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~---~~iis~Ds   70 (298)
                      +|+|+||||||||||++.|++.++   ..+++.|.
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~   35 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDS   35 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            589999999999999999999873   45777775

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK14738 gmk guanylate kinase; Provisional

Probab=98.41  E-value=4.4e-07  Score=80.01  Aligned_cols=118  Identities=14%  Similarity=0.098  Sum_probs=63.8

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccc--------
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSY--------  106 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~--------  106 (298)
                      .++.+++|+||+|||||||+..|..... .        +..-...+|..+...+..+..+|+++...+....        
T Consensus        11 ~~~~~ivi~GpsG~GK~tl~~~L~~~~~-~--------~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~   81 (206)
T PRK14738         11 AKPLLVVISGPSGVGKDAVLARMRERKL-P--------FHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEW   81 (206)
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhcCC-c--------ccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEE
Confidence            4578999999999999999999975421 1        1122233455555566666666655432211100        


Q ss_pred             -h-HHHHHHHHHHhhHHHhhcCCceEEEchhHHHHHHHHcc------CCCCCCCCHHHHHHHHH
Q psy8556         107 -S-VIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDG------INKLPPANLKLRTKFNI  162 (298)
Q Consensus       107 -s-~~~f~~~~~~~i~~i~~~~~~~IlvGGt~~y~~~ll~~------~~~~p~~d~~lr~~l~~  162 (298)
                       . .+.++......+......|+.+|+.. +.-+...+-..      +...|++...+++|+..
T Consensus        82 ~~~~g~~YGt~~~~i~~~~~~g~~vi~~~-~~~g~~~l~~~~pd~~~if~~pps~e~l~~Rl~~  144 (206)
T PRK14738         82 AEVYGNYYGVPKAPVRQALASGRDVIVKV-DVQGAASIKRLVPEAVFIFLAPPSMDELTRRLEL  144 (206)
T ss_pred             EEEcCceecCCHHHHHHHHHcCCcEEEEc-CHHHHHHHHHhCCCeEEEEEeCCCHHHHHHHHHH
Confidence             0 01122222345667778888877743 33233333221      12335555566666643

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.41  E-value=1.5e-06  Score=80.48  Aligned_cols=64  Identities=14%  Similarity=0.050  Sum_probs=42.4

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|++ ..++.++++     .-.+|++++|+||||||||||++.|++.+......+++|+| +.|.++.
T Consensus        45 l~~~~~~-~~il~~is~-----~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~  109 (285)
T PRK14254         45 LNVFYGD-EQALDDVSM-----DIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVY  109 (285)
T ss_pred             EEEEECC-EeeEeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcc
Confidence            3445543 234555444     22457799999999999999999999876411111478888 5676654

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=98.40  E-value=9e-07  Score=88.44  Aligned_cols=56  Identities=23%  Similarity=0.255  Sum_probs=42.7

Q ss_pred             hhcccCchhhhhhccccc-cccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEecc
Q psy8556          10 RDTETDPQQRQLTADFRR-IRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCD   76 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~-~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g   76 (298)
                      ..+++|+++..++.++++ +..      |..|+|+||||+|||||++.|++..+     +++|.|-.|
T Consensus       326 ~~~~~y~~~~~l~~~~s~~i~~------g~riaiiG~NG~GKSTLlk~l~g~~~-----~~~G~v~~g  382 (530)
T COG0488         326 NVSKGYDGGRLLLKDLSFRIDR------GDRIAIVGPNGAGKSTLLKLLAGELG-----PLSGTVKVG  382 (530)
T ss_pred             ccccccCCCceeecCceEEecC------CCEEEEECCCCCCHHHHHHHHhhhcc-----cCCceEEeC
Confidence            457788777777777777 333      45699999999999999999988876     456666433

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=98.40  E-value=7.3e-07  Score=88.81  Aligned_cols=41  Identities=15%  Similarity=0.118  Sum_probs=35.7

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+|++++|+||||||||||++.|++.+.     +++|+| +.|.++.
T Consensus       287 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----p~~G~I~~~g~~~~  328 (510)
T PRK09700        287 CRGEILGFAGLVGSGRTELMNCLFGVDK-----RAGGEIRLNGKDIS  328 (510)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCc-----CCCCeEEECCEECC
Confidence            6688999999999999999999998776     889999 5776664

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.40  E-value=1.5e-07  Score=86.56  Aligned_cols=62  Identities=19%  Similarity=0.094  Sum_probs=45.7

Q ss_pred             hhcccCchhh----hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          10 RDTETDPQQR----QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        10 ~~~~~~~~~~----~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      ..+..|+++.    ..+.++++     .-++|++++|+||||||||||++.|++.+.     +++|.| +.|.++..
T Consensus         7 ~l~~~~~~~~~~~~~~l~~is~-----~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~i~~   73 (280)
T PRK13649          7 NVSYTYQAGTPFEGRALFDVNL-----TIEDGSYTAFIGHTGSGKSTIMQLLNGLHV-----PTQGSVRVDDTLITS   73 (280)
T ss_pred             EEEEEcCCCCccccceeeeeEE-----EEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEccc
Confidence            3566776532    35555554     224577899999999999999999998876     889998 57766653

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=98.40  E-value=8.8e-07  Score=88.18  Aligned_cols=62  Identities=15%  Similarity=0.115  Sum_probs=45.2

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      ..++.|++ ..+++++++     .-.+|++++|+||||||||||++.|++.++.   .+++|.| +.|.++.
T Consensus        10 nl~~~~~~-~~il~~isl-----~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~~~G~i~~~g~~~~   72 (506)
T PRK13549         10 NITKTFGG-VKALDNVSL-----KVRAGEIVSLCGENGAGKSTLMKVLSGVYPH---GTYEGEIIFEGEELQ   72 (506)
T ss_pred             eeEEEeCC-eEeecceeE-----EEeCCeEEEEECCCCCCHHHHHHHHhCCCCC---CCCCeEEEECCEECC
Confidence            34667754 356666666     1235778999999999999999999987651   1278998 5777764

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=98.40  E-value=1.2e-06  Score=85.25  Aligned_cols=113  Identities=21%  Similarity=0.194  Sum_probs=72.7

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe-ccccCCCCCCCHHHHccc---cccc--ccccCcCccchH
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY-CDMDIGTNKPSIIEREIT---PHHL--IDIIEPTKSYSV  108 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy-~g~~i~t~kp~~~e~~~v---~~~l--~~~~~~~e~~s~  108 (298)
                      ++|++.+|+|.||+|||||++.|.+.+.     +|+|+|| +|..+.-..|...-..++   .+|+  ++.++..|++-+
T Consensus        28 ~~GeIHaLLGENGAGKSTLm~iL~G~~~-----P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiL  102 (501)
T COG3845          28 KKGEIHALLGENGAGKSTLMKILFGLYQ-----PDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIIL  102 (501)
T ss_pred             cCCcEEEEeccCCCCHHHHHHHHhCccc-----CCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhh
Confidence            5688999999999999999999988877     9999995 888777777766555443   4453  333444444322


Q ss_pred             HH--------HHHHHHHhhHHHhhcCCceE----EEch----hH---HHHHHHHcc----CCCCCCC
Q psy8556         109 IQ--------FCEDALFSIKNILKKKKLPL----LVGG----TM---LYFKALRDG----INKLPPA  152 (298)
Q Consensus       109 ~~--------f~~~~~~~i~~i~~~~~~~I----lvGG----t~---~y~~~ll~~----~~~~p~~  152 (298)
                      +.        -.+.+.+.+.++..+-..++    .|+.    ..   -.+++|+.+    +.|.|++
T Consensus       103 g~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTa  169 (501)
T COG3845         103 GLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTA  169 (501)
T ss_pred             cCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcc
Confidence            11        12345556666655544433    2222    22   267888887    4566753

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=98.40  E-value=4.7e-07  Score=91.69  Aligned_cols=42  Identities=31%  Similarity=0.354  Sum_probs=36.6

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      ++|+.++|+|+||||||||++.|++.+.     +++|+| +.|.++..
T Consensus       359 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~-----p~~G~I~i~g~~i~~  401 (588)
T PRK13657        359 KPGQTVAIVGPTGAGKSTLINLLQRVFD-----PQSGRILIDGTDIRT  401 (588)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCCEEEECCEEhhh
Confidence            6788999999999999999999999887     888998 57776653

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=98.40  E-value=8.5e-07  Score=87.94  Aligned_cols=59  Identities=15%  Similarity=0.175  Sum_probs=44.5

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .++.|++ ...+.++++     .-.+|++++|+||||||||||++.|++.+.     +++|.| +.|.++.
T Consensus         4 l~~~~~~-~~il~~vs~-----~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~   63 (491)
T PRK10982          4 ISKSFPG-VKALDNVNL-----KVRPHSIHALMGENGAGKSTLLKCLFGIYQ-----KDSGSILFQGKEID   63 (491)
T ss_pred             eEEEeCC-EEeeeeeeE-----EEcCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCceEEEECCEECC
Confidence            4566754 345666655     224577899999999999999999998876     789998 5777664

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=98.40  E-value=1.1e-06  Score=87.51  Aligned_cols=59  Identities=17%  Similarity=0.103  Sum_probs=44.1

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .++.|++ ...+.++++     .-.+|++++|+||||||||||++.|++.+.     +++|.| +.|.++.
T Consensus        10 l~~~~~~-~~il~~isl-----~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~i~   69 (501)
T PRK11288         10 IGKTFPG-VKALDDISF-----DCRAGQVHALMGENGAGKSTLLKILSGNYQ-----PDAGSILIDGQEMR   69 (501)
T ss_pred             eEEEECC-EEEEeeeeE-----EEeCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCEECC
Confidence            4556653 345666655     224577899999999999999999998876     789998 5776664

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.40  E-value=2e-07  Score=86.04  Aligned_cols=61  Identities=15%  Similarity=0.140  Sum_probs=46.3

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      ..+..|+.+...+.++++     .-.+|++++|+||||||||||++.|++.++     +++|+| +.|.++.
T Consensus        10 ~l~~~~~~~~~~l~~vs~-----~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~-----p~~G~i~i~g~~~~   71 (283)
T PRK13636         10 ELNYNYSDGTHALKGINI-----NIKKGEVTAILGGNGAGKSTLFQNLNGILK-----PSSGRILFDGKPID   71 (283)
T ss_pred             eEEEEeCCCCeeeeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCccEEEECCEECC
Confidence            356677644456666665     223567899999999999999999998876     889998 6777764

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=98.39  E-value=1.6e-06  Score=81.97  Aligned_cols=45  Identities=18%  Similarity=0.206  Sum_probs=35.9

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      .+|++++|+|+||||||||++.|++.+...-  ..+|+| |.|.++..
T Consensus        40 ~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~--~~sG~I~~~G~~i~~   85 (330)
T PRK09473         40 RAGETLGIVGESGSGKSQTAFALMGLLAANG--RIGGSATFNGREILN   85 (330)
T ss_pred             cCCCEEEEECCCCchHHHHHHHHHcCCCCCC--CCCeEEEECCEECCc
Confidence            4678999999999999999999999886210  138888 68887764

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=98.39  E-value=3.9e-07  Score=80.36  Aligned_cols=43  Identities=28%  Similarity=0.339  Sum_probs=36.1

Q ss_pred             ccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          33 LLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        33 ~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .-.+|++++|+||||||||||++.|++.+.     +++|+| +.|.++.
T Consensus        20 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~   63 (213)
T TIGR01277        20 NVADGEIVAIMGPSGAGKSTLLNLIAGFIE-----PASGSIKVNDQSHT   63 (213)
T ss_pred             EEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEcc
Confidence            335688999999999999999999998876     889998 5676654

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.39  E-value=2.6e-07  Score=84.71  Aligned_cols=60  Identities=20%  Similarity=0.227  Sum_probs=45.3

Q ss_pred             hcccCch-hhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQ-QRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~-~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|+. +...+.++++     .-.+|++++|+||||||||||++.|++.+.     +++|+| +.|.++.
T Consensus        13 l~~~~~~~~~~il~~isl-----~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~i~   74 (271)
T PRK13632         13 VSFSYPNSENNALKNVSF-----EINEGEYVAILGHNGSGKSTISKILTGLLK-----PQSGEIKIDGITIS   74 (271)
T ss_pred             EEEEcCCCCccceeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEecC
Confidence            4567763 3456666555     224577899999999999999999998876     789998 5776664

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=98.39  E-value=1.7e-06  Score=81.79  Aligned_cols=65  Identities=17%  Similarity=0.118  Sum_probs=45.1

Q ss_pred             hcccCchh---hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          11 DTETDPQQ---RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        11 ~~~~~~~~---~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      .+..|+.+   ...+.++++     .-.+|++++|+|+||||||||++.|++.+..+ -.+++|+| |.|.++..
T Consensus         9 l~~~y~~~~~~~~~l~~vsl-----~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~-~~~~~G~i~~~g~~i~~   77 (330)
T PRK15093          9 LTIEFKTSDGWVKAVDRVSM-----TLTEGEIRGLVGESGSGKSLIAKAICGVTKDN-WRVTADRMRFDDIDLLR   77 (330)
T ss_pred             eEEEEeCCCCCEEEEeeeEE-----EECCCCEEEEECCCCCCHHHHHHHHHccCCCC-CCCcceEEEECCEECCc
Confidence            45667532   234555554     22467789999999999999999999886411 12578888 68877754

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=98.39  E-value=2.1e-06  Score=85.39  Aligned_cols=42  Identities=14%  Similarity=0.206  Sum_probs=36.4

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      .+|++++|+||||||||||++.|++.+.     +++|+| +.|.++..
T Consensus       276 ~~Ge~~~liG~NGsGKSTLl~~l~G~~~-----p~~G~I~~~g~~i~~  318 (501)
T PRK10762        276 RKGEILGVSGLMGAGRTELMKVLYGALP-----RTSGYVTLDGHEVVT  318 (501)
T ss_pred             cCCcEEEEecCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECCC
Confidence            6788999999999999999999998776     889999 67777654

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.38  E-value=2e-07  Score=83.45  Aligned_cols=60  Identities=13%  Similarity=0.132  Sum_probs=44.5

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      .+..|+. ...+.++++     .-.+|++++|+||||||||||++.|++.++     +++|+| +.|.++..
T Consensus        11 l~~~~~~-~~~l~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~   71 (237)
T PRK11614         11 VSAHYGK-IQALHEVSL-----HINQGEIVTLIGANGAGKTTLLGTLCGDPR-----ATSGRIVFDGKDITD   71 (237)
T ss_pred             EEEeeCC-ceeeeeeEE-----EEcCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCCceEEECCEecCC
Confidence            4556653 445666655     223577899999999999999999998876     788988 67766543

>PRK08233 hypothetical protein; Provisional

Probab=98.38  E-value=2.5e-06  Score=72.71  Aligned_cols=35  Identities=11%  Similarity=0.337  Sum_probs=28.8

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCC-CeEeecCC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIP-CEIISIDS   70 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~-~~iis~Ds   70 (298)
                      ++.+|+|.|++|||||||+..|++.++ ..++..|.
T Consensus         2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~   37 (182)
T PRK08233          2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDR   37 (182)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECC
Confidence            468999999999999999999999986 34554554

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=98.38  E-value=5.1e-07  Score=78.92  Aligned_cols=60  Identities=20%  Similarity=0.124  Sum_probs=45.4

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe-ccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY-CDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy-~g~~i~   80 (298)
                      .+|.||.--+-+.|.++     .-++|++++|.||||+||||+++.||.++.     +|+|.|+ .|.+..
T Consensus         7 l~K~y~~~v~AvrdVSF-----~ae~Gei~GlLG~NGAGKTT~LRmiatlL~-----P~~G~v~idg~d~~   67 (245)
T COG4555           7 LTKSYGSKVQAVRDVSF-----EAEEGEITGLLGENGAGKTTLLRMIATLLI-----PDSGKVTIDGVDTV   67 (245)
T ss_pred             hhhhccCHHhhhhheeE-----EeccceEEEEEcCCCCCchhHHHHHHHhcc-----CCCceEEEeecccc
Confidence            46778762222333333     446789999999999999999999998776     9999996 777765

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.38  E-value=8.3e-07  Score=79.69  Aligned_cols=63  Identities=11%  Similarity=0.160  Sum_probs=48.6

Q ss_pred             HhhhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556           8 LDRDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      ++-+||+|+.... ++|+++     .-++|++++++||||+||||+.+.|.+.+.     +++|.| ++|.++..
T Consensus         5 ie~vtK~Fg~k~a-v~~isf-----~v~~G~i~GllG~NGAGKTTtfRmILglle-----~~~G~I~~~g~~~~~   68 (300)
T COG4152           5 IEGVTKSFGDKKA-VDNISF-----EVPPGEIFGLLGPNGAGKTTTFRMILGLLE-----PTEGEITWNGGPLSQ   68 (300)
T ss_pred             EecchhccCceee-ecceee-----eecCCeEEEeecCCCCCccchHHHHhccCC-----ccCceEEEcCcchhh
Confidence            3457788876543 555555     235577899999999999999999987766     999999 88877654

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=98.38  E-value=3e-07  Score=83.94  Aligned_cols=59  Identities=19%  Similarity=0.156  Sum_probs=44.4

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|++ ..++.++++     .-.+|++++|+||||||||||++.|++.++     +++|.| +.|.++.
T Consensus        13 l~~~~~~-~~~l~~isl-----~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~   72 (265)
T PRK10253         13 LTLGYGK-YTVAENLTV-----EIPDGHFTAIIGPNGCGKSTLLRTLSRLMT-----PAHGHVWLDGEHIQ   72 (265)
T ss_pred             EEEEECC-EEEeeecce-----EECCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCcEEEECCEEhh
Confidence            4566764 345666655     224577899999999999999999998876     788888 5776654

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=98.38  E-value=4.5e-07  Score=81.00  Aligned_cols=41  Identities=32%  Similarity=0.431  Sum_probs=35.2

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+|++++|+||||||||||++.|++.+.     +++|.| +.|.++.
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~   64 (232)
T PRK10771         23 ERGERVAILGPSGAGKSTLLNLIAGFLT-----PASGSLTLNGQDHT   64 (232)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCeecC
Confidence            5688999999999999999999998876     788988 5776654

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.38  E-value=2.6e-06  Score=79.11  Aligned_cols=125  Identities=18%  Similarity=0.157  Sum_probs=77.0

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHHHccccccccccc----------CcC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIEREITPHHLIDII----------EPT  103 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e~~~v~~~l~~~~----------~~~  103 (298)
                      ..|++++|+|-||||||||.+++.++..     +++|+| +.|.++..  .+..++..++.+-+..+          +..
T Consensus        52 ~~GeIfViMGLSGSGKSTLvR~~NrLie-----pt~G~ilv~g~di~~--~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl  124 (386)
T COG4175          52 EEGEIFVIMGLSGSGKSTLVRLLNRLIE-----PTRGEILVDGKDIAK--LSAAELRELRRKKISMVFQSFALLPHRTVL  124 (386)
T ss_pred             cCCeEEEEEecCCCCHHHHHHHHhccCC-----CCCceEEECCcchhc--CCHHHHHHHHhhhhhhhhhhhccccchhHh
Confidence            7789999999999999999999976655     999999 78888874  34445544443322211          111


Q ss_pred             c---------cchHHHHHHHHHHhhHHH----hhcCCceEEEchhH---HHHHHHHcc----CCCCC--CCCHHHHHHHH
Q psy8556         104 K---------SYSVIQFCEDALFSIKNI----LKKKKLPLLVGGTM---LYFKALRDG----INKLP--PANLKLRTKFN  161 (298)
Q Consensus       104 e---------~~s~~~f~~~~~~~i~~i----~~~~~~~IlvGGt~---~y~~~ll~~----~~~~p--~~d~~lr~~l~  161 (298)
                      +         ..+..+-.+.+.+.++..    ++...+-=++||..   -..+|+..+    +.|.|  .-||-+|.++.
T Consensus       125 ~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQ  204 (386)
T COG4175         125 ENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQ  204 (386)
T ss_pred             hhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHH
Confidence            1         111222223333333221    12223335889987   367888866    23444  45888888887


Q ss_pred             HHHHh
Q psy8556         162 IDINK  166 (298)
Q Consensus       162 ~~~~~  166 (298)
                      +++-+
T Consensus       205 deLl~  209 (386)
T COG4175         205 DELLE  209 (386)
T ss_pred             HHHHH
Confidence            77654

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.38  E-value=3.2e-06  Score=76.35  Aligned_cols=63  Identities=16%  Similarity=0.072  Sum_probs=42.4

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeec--CCceE-eccccCCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISI--DSALV-YCDMDIGT   81 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~--Ds~qv-y~g~~i~t   81 (298)
                      .+..|++ ..+++++++     .-.+|++++|+||||||||||++.|++..+  .+.+  ++|+| +.|.++..
T Consensus         9 ~~~~~~~-~~~l~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~--~~~~~~~~G~i~~~g~~~~~   74 (250)
T PRK14245          9 VNFWYGD-FHALKGISM-----EIEEKSVVAFIGPSGCGKSTFLRLFNRMND--LIPATRLEGEIRIDGRNIYD   74 (250)
T ss_pred             EEEEECC-EeEEeeeeE-----EEeCCCEEEEECCCCCCHHHHHHHHhhhhc--ccCCCCCceEEEECCEeccc
Confidence            3455654 345555554     224577899999999999999999998632  1112  57888 67776643

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=98.38  E-value=8.9e-07  Score=78.89  Aligned_cols=60  Identities=15%  Similarity=0.176  Sum_probs=44.7

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      .+..|++ ...+.++++     .-.+|++++|+||||||||||++.|++.++     +++|+| +.|.++..
T Consensus         6 l~~~~~~-~~~l~~vs~-----~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~   66 (230)
T TIGR03410         6 LNVYYGQ-SHILRGVSL-----EVPKGEVTCVLGRNGVGKTTLLKTLMGLLP-----VKSGSIRLDGEDITK   66 (230)
T ss_pred             EEEEeCC-eEEecceee-----EECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCEECCC
Confidence            4556764 345555555     224577899999999999999999998876     889998 57766543

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=98.38  E-value=4.5e-07  Score=80.64  Aligned_cols=64  Identities=17%  Similarity=0.086  Sum_probs=43.9

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|++ ...+.++++     .-.+|++++|+||||||||||++.|++.+....-.+++|+| +.|.++.
T Consensus         6 l~~~~~~-~~~l~~vsl-----~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~   70 (227)
T cd03260           6 LNVYYGD-KHALKDISL-----DIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIY   70 (227)
T ss_pred             EEEEcCC-ceeeeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhh
Confidence            3556654 345555554     22457789999999999999999999987100001788988 5776654

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=98.38  E-value=4.1e-07  Score=91.96  Aligned_cols=42  Identities=24%  Similarity=0.242  Sum_probs=36.6

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      ++|+.++|+||||||||||++.|++.+.     +++|+| +.|.++..
T Consensus       364 ~~G~~~aivG~sGsGKSTL~~ll~g~~~-----p~~G~I~i~g~~i~~  406 (574)
T PRK11160        364 KAGEKVALLGRTGCGKSTLLQLLTRAWD-----PQQGEILLNGQPIAD  406 (574)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEEhhh
Confidence            5678899999999999999999999887     899999 57777654

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=98.37  E-value=3.6e-07  Score=81.71  Aligned_cols=42  Identities=21%  Similarity=0.190  Sum_probs=35.9

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      .+|++++|+||||||||||++.|++.+.     +++|+| +.|.++..
T Consensus         9 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~   51 (230)
T TIGR01184         9 QQGEFISLIGHSGCGKSTLLNLISGLAQ-----PTSGGVILEGKQITE   51 (230)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECCC
Confidence            5688999999999999999999998876     889998 57766643

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.37  E-value=3.8e-07  Score=84.42  Aligned_cols=62  Identities=18%  Similarity=0.176  Sum_probs=46.2

Q ss_pred             hhcccCchh----hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          10 RDTETDPQQ----RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        10 ~~~~~~~~~----~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      ..+..|+.+    ...+.++++     .-.+|++++|+||||||||||++.|++.+.     +++|+| +.|.++.+
T Consensus         7 ~l~~~y~~~~~~~~~~l~~vs~-----~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~   73 (287)
T PRK13637          7 NLTHIYMEGTPFEKKALDNVNI-----EIEDGEFVGLIGHTGSGKSTLIQHLNGLLK-----PTSGKIIIDGVDITD   73 (287)
T ss_pred             EEEEECCCCCccccceeeeeEE-----EEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCccEEEECCEECCC
Confidence            346677653    245555555     224577899999999999999999998876     889999 67877754

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.37  E-value=3e-07  Score=84.80  Aligned_cols=63  Identities=19%  Similarity=0.222  Sum_probs=47.7

Q ss_pred             hhhcccCchh-hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556           9 DRDTETDPQQ-RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus         9 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      ...+..|++. ...+.++++     .-.+|++++|+||||||||||++.|++.+.     +++|.| +.|.++.+
T Consensus         9 ~~l~~~~~~~~~~~l~~vsl-----~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~-----p~~G~i~~~g~~i~~   73 (279)
T PRK13635          9 EHISFRYPDAATYALKDVSF-----SVYEGEWVAIVGHNGSGKSTLAKLLNGLLL-----PEAGTITVGGMVLSE   73 (279)
T ss_pred             EEEEEEeCCCCccceeeeEE-----EEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEECCc
Confidence            3456677643 346666665     224577899999999999999999998876     889999 68877754

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=98.37  E-value=1.9e-07  Score=85.26  Aligned_cols=53  Identities=17%  Similarity=0.192  Sum_probs=41.1

Q ss_pred             hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          19 RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        19 ~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      ...++++++     .-.+|++++|+||||||||||++.|++.+.     +++|+| +.|.++..
T Consensus        24 ~~il~~isl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~   77 (265)
T TIGR02769        24 APVLTNVSL-----SIEEGETVGLLGRSGCGKSTLARLLLGLEK-----PAQGTVSFRGQDLYQ   77 (265)
T ss_pred             eEEeeCcee-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEEccc
Confidence            345555555     224577899999999999999999998876     889999 67766653

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=98.37  E-value=2.5e-07  Score=84.08  Aligned_cols=58  Identities=24%  Similarity=0.236  Sum_probs=43.7

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-ecccc
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMD   78 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~   78 (298)
                      ..+..|++ ..++.++++     .-++|++++|+||||||||||++.|++.+.     +++|+| |.|.+
T Consensus        11 ~l~~~~~~-~~il~~is~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~   69 (258)
T PRK11701         11 GLTKLYGP-RKGCRDVSF-----DLYPGEVLGIVGESGSGKTTLLNALSARLA-----PDAGEVHYRMRD   69 (258)
T ss_pred             eeEEEcCC-ceeeeeeeE-----EEeCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCcc
Confidence            34556654 345555554     224677999999999999999999998876     889998 67765

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.37  E-value=2.9e-07  Score=84.37  Aligned_cols=59  Identities=10%  Similarity=0.103  Sum_probs=44.4

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|++ ..++.++++     .-.+|++++|+||||||||||++.|++.+.     +++|.| +.|.++.
T Consensus         7 l~~~~~~-~~il~~isl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~   66 (271)
T PRK13638          7 LWFRYQD-EPVLKGLNL-----DFSLSPVTGLVGANGCGKSTLFMNLSGLLR-----PQKGAVLWQGKPLD   66 (271)
T ss_pred             EEEEcCC-cccccceEE-----EEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCccEEEECCEEcc
Confidence            4566754 346666665     223467899999999999999999998876     889988 5776653

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.37  E-value=3.8e-07  Score=79.40  Aligned_cols=41  Identities=24%  Similarity=0.311  Sum_probs=35.1

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      ++|++++|+||||||||||++.|++.+.     +++|.| +.|.++.
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~i~   65 (195)
T PRK13541         24 LPSAITYIKGANGCGKSSLLRMIAGIMQ-----PSSGNIYYKNCNIN   65 (195)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCcccC
Confidence            5688999999999999999999998876     788988 5676653

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=98.36  E-value=8.9e-07  Score=89.58  Aligned_cols=41  Identities=15%  Similarity=0.348  Sum_probs=34.4

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      ++|+.++|+||||||||||++.|++.+      +++|+| +.|.++..
T Consensus       374 ~~G~~vaIvG~SGsGKSTL~~lL~g~~------p~~G~I~i~g~~i~~  415 (588)
T PRK11174        374 PAGQRIALVGPSGAGKTSLLNALLGFL------PYQGSLKINGIELRE  415 (588)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC------CCCcEEEECCEeccc
Confidence            678899999999999999999998765      357888 57777753

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=98.36  E-value=2.6e-07  Score=81.71  Aligned_cols=59  Identities=15%  Similarity=0.071  Sum_probs=44.1

Q ss_pred             cccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          12 TETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      +..||.+..++.++++     .-.+|++++|+||||||||||++.|++.+.     +++|+| +.|.++.
T Consensus         7 ~~~~~~~~~il~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~   66 (218)
T cd03290           7 YFSWGSGLATLSNINI-----RIPTGQLTMIVGQVGCGKSSLLLAILGEMQ-----TLEGKVHWSNKNES   66 (218)
T ss_pred             EEecCCCCcceeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhccCC-----CCCCeEEECCcccc
Confidence            4456655566666665     223467899999999999999999998876     788988 4565543

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.36  E-value=2.8e-07  Score=85.26  Aligned_cols=60  Identities=25%  Similarity=0.235  Sum_probs=45.1

Q ss_pred             hcccCchh----hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQ----RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~----~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|+++    ...++++++     .-.+|++++|+||||||||||++.|++.+.     +++|.| +.|.++.
T Consensus         8 l~~~y~~~~~~~~~~l~~vsl-----~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~-----p~~G~i~~~g~~i~   72 (286)
T PRK13646          8 VSYTYQKGTPYEHQAIHDVNT-----EFEQGKYYAIVGQTGSGKSTLIQNINALLK-----PTTGTVTVDDITIT   72 (286)
T ss_pred             EEEEECCCCccccCceeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEECc
Confidence            45667543    246666665     223567899999999999999999998776     888998 5777664

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.36  E-value=2.2e-06  Score=74.16  Aligned_cols=30  Identities=20%  Similarity=0.427  Sum_probs=25.9

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCCCeEe
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIPCEII   66 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~~~ii   66 (298)
                      |.+++|+||||||||||++.|++.++..++
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~   31 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQTQLL   31 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCCeEE
Confidence            578999999999999999999998765443

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=98.36  E-value=3.2e-07  Score=81.14  Aligned_cols=60  Identities=23%  Similarity=0.255  Sum_probs=44.5

Q ss_pred             hcccCchh-hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQ-RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~-~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|+.+ ...+.++++     .-++|++++|+||||||||||++.|++...     +++|+| +.|.++.
T Consensus         8 l~~~~~~~~~~~l~~i~~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~   69 (221)
T cd03244           8 VSLRYRPNLPPVLKNISF-----SIKPGEKVGIVGRTGSGKSSLLLALFRLVE-----LSSGSILIDGVDIS   69 (221)
T ss_pred             EEEecCCCCcccccceEE-----EECCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCCEEEECCEEhH
Confidence            45667654 356666665     224567899999999999999999998876     788888 5665543

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PLN03232 ABC transporter C family member; Provisional

Probab=98.36  E-value=8.3e-07  Score=98.66  Aligned_cols=126  Identities=17%  Similarity=0.142  Sum_probs=72.2

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCH--HHHcccccc--cc-----cccCcCc
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSI--IEREITPHH--LI-----DIIEPTK  104 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~--~e~~~v~~~--l~-----~~~~~~e  104 (298)
                      ++|+.++|+|+||||||||++.|.+.+.     +++|+| ..|.++.+-.+..  ..+..+|+.  ++     +.+++..
T Consensus      1260 ~~GekvaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~ 1334 (1495)
T PLN03232       1260 SPSEKVGVVGRTGAGKSSMLNALFRIVE-----LEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS 1334 (1495)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCc-----CCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC
Confidence            5778899999999999999999998877     899999 5888886433211  223344543  11     1123333


Q ss_pred             cchHHHHHHHHH-----HhhHHHhhcCCceEEEchhH---------HHHHHHHcc----CCCCCC--CCHHHHHHHHHHH
Q psy8556         105 SYSVIQFCEDAL-----FSIKNILKKKKLPLLVGGTM---------LYFKALRDG----INKLPP--ANLKLRTKFNIDI  164 (298)
Q Consensus       105 ~~s~~~f~~~~~-----~~i~~i~~~~~~~IlvGGt~---------~y~~~ll~~----~~~~p~--~d~~lr~~l~~~~  164 (298)
                      .++-.+..+.+.     +.+......-+.+|-.+|..         ...++++.+    +.|.|+  .|.+..+.+.+.+
T Consensus      1335 ~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L 1414 (1495)
T PLN03232       1335 EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTI 1414 (1495)
T ss_pred             CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHH
Confidence            344333222221     12333222334455444443         356888876    345554  3666555554444


Q ss_pred             H
Q psy8556         165 N  165 (298)
Q Consensus       165 ~  165 (298)
                      .
T Consensus      1415 ~ 1415 (1495)
T PLN03232       1415 R 1415 (1495)
T ss_pred             H
Confidence            3

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.36  E-value=2.4e-07  Score=84.82  Aligned_cols=61  Identities=18%  Similarity=0.141  Sum_probs=45.1

Q ss_pred             hhcccCchh-hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          10 RDTETDPQQ-RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        10 ~~~~~~~~~-~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      ..+..|++. ...+.+++.     .-++|++++|+||||||||||++.|++.+.     +++|+| +.|.++.
T Consensus        12 ~l~~~~~~~~~~~l~~isl-----~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~~~   74 (269)
T PRK13648         12 NVSFQYQSDASFTLKDVSF-----NIPKGQWTSIVGHNGSGKSTIAKLMIGIEK-----VKSGEIFYNNQAIT   74 (269)
T ss_pred             EEEEEcCCCCCcceeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECC
Confidence            345667653 235555554     224577899999999999999999998876     789999 5776654

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=98.36  E-value=1.3e-06  Score=90.14  Aligned_cols=42  Identities=29%  Similarity=0.262  Sum_probs=37.0

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      ++|+.++|+||||||||||++.|++.+.     +++|+| +.|.++..
T Consensus       489 ~~G~~iaIvG~sGsGKSTLlklL~gl~~-----p~~G~I~idg~~l~~  531 (694)
T TIGR03375       489 RPGEKVAIIGRIGSGKSTLLKLLLGLYQ-----PTEGSVLLDGVDIRQ  531 (694)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEEhhh
Confidence            6788999999999999999999999887     889999 57777653

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=98.35  E-value=2.3e-07  Score=83.20  Aligned_cols=62  Identities=18%  Similarity=0.235  Sum_probs=43.7

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      ..+..|++ ...+.++++     .-++|++++|+||||||||||++.|++.+.   ..+++|+| +.|.++.
T Consensus         5 ~l~~~~~~-~~~l~~isl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~G~i~~~g~~~~   67 (243)
T TIGR01978         5 DLHVSVED-KEILKGVNL-----TVKKGEIHAIMGPNGSGKSTLSKTIAGHPS---YEVTSGTILFKGQDLL   67 (243)
T ss_pred             eEEEEECC-EEEEeccce-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCcceEEECCEecC
Confidence            34566764 345555554     224577899999999999999999998741   12688888 5666654

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=98.35  E-value=2.6e-07  Score=84.57  Aligned_cols=51  Identities=24%  Similarity=0.244  Sum_probs=40.1

Q ss_pred             hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          20 QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        20 ~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      ..+.++++     .-++|++++|+||||||||||++.|++.+.     +++|+| +.|.++.
T Consensus        27 ~~l~~vsl-----~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~   78 (267)
T PRK15112         27 EAVKPLSF-----TLREGQTLAIIGENGSGKSTLAKMLAGMIE-----PTSGELLIDDHPLH   78 (267)
T ss_pred             ceeeeeeE-----EecCCCEEEEEcCCCCCHHHHHHHHhCCCC-----CCCCEEEECCEECC
Confidence            45566555     224577899999999999999999998876     889998 6776654

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=98.35  E-value=4.2e-07  Score=80.94  Aligned_cols=60  Identities=20%  Similarity=0.189  Sum_probs=44.0

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      .+..|++ ..++.++++     .-++|++++|+||||||||||++.|++...     +++|+| +.|.++..
T Consensus        13 l~~~~~~-~~il~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~   73 (225)
T PRK10247         13 VGYLAGD-AKILNNISF-----SLRAGEFKLITGPSGCGKSTLLKIVASLIS-----PTSGTLLFEGEDIST   73 (225)
T ss_pred             cEEeeCC-ceeeeccEE-----EEcCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCCeEEECCEEcCc
Confidence            3455653 345555555     224677999999999999999999998766     889999 56666543

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.35  E-value=3.1e-07  Score=84.96  Aligned_cols=60  Identities=17%  Similarity=0.163  Sum_probs=44.5

Q ss_pred             hcccCchhh----hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQR----QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~----~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|+...    ..+.++++     .-.+|++++|+||||||||||++.|++.+.     +++|+| +.|.++.
T Consensus        12 l~~~~~~~~~~~~~il~~is~-----~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~   76 (289)
T PRK13645         12 VSYTYAKKTPFEFKALNNTSL-----TFKKNKVTCVIGTTGSGKSTMIQLTNGLII-----SETGQTIVGDYAIP   76 (289)
T ss_pred             EEEEeCCCCccccceeeeeEE-----EEeCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEEcc
Confidence            456676542    35666555     224577899999999999999999998876     788998 5676653

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.35  E-value=4.2e-07  Score=79.72  Aligned_cols=59  Identities=22%  Similarity=0.186  Sum_probs=43.6

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .++.|++ ...+.++++     .-++|++++|+||||||||||++.|++.++     +++|+| +.|.++.
T Consensus         7 l~~~~~~-~~~l~~vs~-----~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----p~~G~v~~~g~~~~   66 (204)
T PRK13538          7 LACERDE-RILFSGLSF-----TLNAGELVQIEGPNGAGKTSLLRILAGLAR-----PDAGEVLWQGEPIR   66 (204)
T ss_pred             EEEEECC-EEEEecceE-----EECCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEEcc
Confidence            3455653 345555544     224677999999999999999999998877     889998 5676654

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=98.35  E-value=3.7e-07  Score=80.68  Aligned_cols=60  Identities=25%  Similarity=0.206  Sum_probs=44.0

Q ss_pred             hcccCchh-hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQ-RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~-~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|+.+ ..++.++++     .-.+|++++|+||||||||||++.|++..+     +++|+| +.|.++.
T Consensus         8 l~~~~~~~~~~~l~~i~~-----~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~   69 (220)
T cd03245           8 VSFSYPNQEIPALDNVSL-----TIRAGEKVAIIGRVGSGKSTLLKLLAGLYK-----PTSGSVLLDGTDIR   69 (220)
T ss_pred             EEEEcCCCCcccccceEE-----EEcCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCCeEEECCEEhH
Confidence            45567543 345666555     224577899999999999999999998765     788888 5666553

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.34  E-value=3e-07  Score=84.95  Aligned_cols=64  Identities=19%  Similarity=0.114  Sum_probs=47.9

Q ss_pred             hhhcccCchh-h---hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCC
Q psy8556           9 DRDTETDPQQ-R---QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTN   82 (298)
Q Consensus         9 ~~~~~~~~~~-~---~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~   82 (298)
                      ..++|+|++. .   ..+++.++   .  =++|++++|+|.||+|||||.+++..+-.     +++|+| +.|.++...
T Consensus         5 ~~vsK~~~~~~~~~~~al~~vsL---~--I~~GeI~GIIG~SGAGKSTLiR~iN~Le~-----PtsG~v~v~G~di~~l   73 (339)
T COG1135           5 ENVSKTFGQTGTGTVTALDDVSL---E--IPKGEIFGIIGYSGAGKSTLLRLINLLER-----PTSGSVFVDGQDLTAL   73 (339)
T ss_pred             EeeeeeeccCCCCceeeeccceE---E--EcCCcEEEEEcCCCCcHHHHHHHHhccCC-----CCCceEEEcCEecccC
Confidence            3567889874 2   33444444   2  25677999999999999999999976655     999999 788887753

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.34  E-value=2.7e-07  Score=85.39  Aligned_cols=61  Identities=18%  Similarity=0.152  Sum_probs=46.3

Q ss_pred             hhcccCchh----hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          10 RDTETDPQQ----RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        10 ~~~~~~~~~----~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      ..++.|+.+    ...+.++++     .-.+|++++|+||||||||||++.|++.++     +++|+| +.|.++.
T Consensus         7 ~l~~~~~~~~~~~~~~l~~vsl-----~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~   72 (287)
T PRK13641          7 NVDYIYSPGTPMEKKGLDNISF-----ELEEGSFVALVGHTGSGKSTLMQHFNALLK-----PSSGTITIAGYHIT   72 (287)
T ss_pred             EEEEEcCCCCCccccceeeeEE-----EEeCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEECc
Confidence            456778642    346666665     224577899999999999999999998876     899999 5777664

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=98.34  E-value=4.6e-07  Score=77.98  Aligned_cols=59  Identities=20%  Similarity=0.234  Sum_probs=43.6

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|+. ..++.+++.     .-.+|++++|+||||||||||++.|++.+.     +++|+| +.|.++.
T Consensus         5 l~~~~~~-~~~l~~~~~-----~i~~G~~~~l~G~nGsGKStLl~~i~G~~~-----~~~G~v~~~g~~~~   64 (180)
T cd03214           5 LSVGYGG-RTVLDDLSL-----SIEAGEIVGILGPNGAGKSTLLKTLAGLLK-----PSSGEILLDGKDLA   64 (180)
T ss_pred             EEEEECC-eeeEeeeEE-----EECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECC
Confidence            3556654 334555444     224678999999999999999999998776     889999 5776664

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=98.34  E-value=3e-07  Score=80.49  Aligned_cols=57  Identities=25%  Similarity=0.115  Sum_probs=42.4

Q ss_pred             hhcccCchhh----hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe-cc
Q psy8556          10 RDTETDPQQR----QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY-CD   76 (298)
Q Consensus        10 ~~~~~~~~~~----~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy-~g   76 (298)
                      ..+..|+.+.    .++.++++     .-++|++++|+||||||||||++.|++..+     +++|+|+ .|
T Consensus         5 ~l~~~~~~~~~~~~~il~~~s~-----~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~-----~~~G~i~~~g   66 (204)
T cd03250           5 DASFTWDSGEQETSFTLKDINL-----EVPKGELVAIVGPVGSGKSSLLSALLGELE-----KLSGSVSVPG   66 (204)
T ss_pred             EEEEecCCCCccccceeeeeeE-----EECCCCEEEEECCCCCCHHHHHHHHhCcCC-----CCCCeEEEcC
Confidence            3456676542    46666555     224567899999999999999999998876     7888884 44

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=98.34  E-value=2.8e-07  Score=73.53  Aligned_cols=32  Identities=38%  Similarity=0.614  Sum_probs=29.7

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          39 KVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      +|+|+||+||||||+++.|++.++..+++.|.
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~   32 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLGFPVISMDD   32 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence            58999999999999999999999988888886

...

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=98.34  E-value=2.1e-07  Score=75.83  Aligned_cols=42  Identities=33%  Similarity=0.459  Sum_probs=35.7

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      ++|++++|+||||||||||++.|++...     +++|.| +.+.++..
T Consensus         9 ~~g~~~~i~G~nGsGKStLl~~l~g~~~-----~~~G~i~~~~~~~~~   51 (137)
T PF00005_consen    9 KPGEIVAIVGPNGSGKSTLLKALAGLLP-----PDSGSILINGKDISD   51 (137)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHTTSSH-----ESEEEEEETTEEGTT
T ss_pred             cCCCEEEEEccCCCccccceeeeccccc-----ccccccccccccccc
Confidence            5678999999999999999999998876     688888 57777654

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=98.34  E-value=8.8e-07  Score=79.89  Aligned_cols=59  Identities=15%  Similarity=0.187  Sum_probs=43.1

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecC-----CceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISID-----SALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~D-----s~qv-y~g~~i~   80 (298)
                      .+..|++ ...+.++++     .-++|++++|+||||||||||++.|++.+.     ++     +|+| +.|.++.
T Consensus         7 l~~~~~~-~~~l~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~~~~~~G~i~~~g~~~~   71 (247)
T TIGR00972         7 LNLFYGE-KEALKNINL-----DIPKNQVTALIGPSGCGKSTLLRSLNRMND-----LVPGVRIEGKVLFDGQDIY   71 (247)
T ss_pred             EEEEECC-eeeecceeE-----EECCCCEEEEECCCCCCHHHHHHHHhccCC-----CCcCCCCceEEEECCEEcc
Confidence            3456654 234555544     224578999999999999999999998876     66     8888 5777664

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=98.34  E-value=8.2e-07  Score=89.12  Aligned_cols=42  Identities=33%  Similarity=0.393  Sum_probs=36.4

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      ++|+.++|+||||||||||++.|++.++     +++|+| +.|.++..
T Consensus       342 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~i~~  384 (544)
T TIGR01842       342 QAGEALAIIGPSGSGKSTLARLIVGIWP-----PTSGSVRLDGADLKQ  384 (544)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEehhh
Confidence            5788999999999999999999999887     888988 57777653

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=98.34  E-value=3.6e-07  Score=81.43  Aligned_cols=40  Identities=23%  Similarity=0.300  Sum_probs=33.4

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDI   79 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i   79 (298)
                      .+|++++|+||||||||||++.|++.+.     +++|.| +.|.++
T Consensus        46 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~   86 (224)
T cd03220          46 PRGERIGLIGRNGAGKSTLLRLLAGIYP-----PDSGTVTVRGRVS   86 (224)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEc
Confidence            5677999999999999999999998765     788888 455443

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=98.33  E-value=3e-07  Score=84.22  Aligned_cols=62  Identities=16%  Similarity=0.161  Sum_probs=45.5

Q ss_pred             hhcccCch--------hhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          10 RDTETDPQ--------QRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        10 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .++..|+.        +..++.|+++     .-.+|++++|+||||||||||++.|++.+.     +++|+| +.|.++.
T Consensus         8 nl~~~~~~~~~~~~~~~~~il~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~sG~i~~~g~~~~   77 (268)
T PRK10419          8 GLSHHYAHGGLSGKHQHQTVLNNVSL-----SLKSGETVALLGRSGCGKSTLARLLVGLES-----PSQGNVSWRGEPLA   77 (268)
T ss_pred             ceEEEecCCccccccCceeeEeceeE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEecc
Confidence            34566763        2445555555     224577899999999999999999998766     789998 5776654


Q ss_pred             C
Q psy8556          81 T   81 (298)
Q Consensus        81 t   81 (298)
                      .
T Consensus        78 ~   78 (268)
T PRK10419         78 K   78 (268)
T ss_pred             c
Confidence            3

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.33  E-value=3.6e-07  Score=84.66  Aligned_cols=60  Identities=23%  Similarity=0.202  Sum_probs=45.9

Q ss_pred             hcccCchh----hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQ----RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~----~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|+.+    ...+.|+++     .-.+|++++|+||||||||||++.|++.+.     +++|.| +.|.++.
T Consensus         8 l~~~y~~~~~~~~~~L~~vsl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~   72 (290)
T PRK13634          8 VEHRYQYKTPFERRALYDVNV-----SIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ-----PTSGTVTIGERVIT   72 (290)
T ss_pred             EEEEECCCCcccccceeeEEE-----EEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEECc
Confidence            45677643    346666665     224567899999999999999999998876     889998 6777764

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.33  E-value=4.4e-07  Score=81.67  Aligned_cols=59  Identities=19%  Similarity=0.231  Sum_probs=44.1

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|++ ...+.++++     .-.+|++++|+||||||||||++.|++.+.     +++|+| +.|.++.
T Consensus         9 l~~~~~~-~~~l~~vsl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~   68 (241)
T PRK14250          9 VSYSSFG-KEILKDISV-----KFEGGAIYTIVGPSGAGKSTLIKLINRLID-----PTEGSILIDGVDIK   68 (241)
T ss_pred             EEEEeCC-eeeeeeeeE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEEhh
Confidence            4556654 345566555     224577899999999999999999998776     789998 6776664

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=98.33  E-value=1.3e-06  Score=90.43  Aligned_cols=42  Identities=26%  Similarity=0.329  Sum_probs=37.0

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      ++|+.++|+||||||||||++.|++.+.     +++|+| +.|.++..
T Consensus       505 ~~Ge~vaIvG~SGsGKSTLl~lL~gl~~-----p~~G~I~idg~~i~~  547 (711)
T TIGR00958       505 HPGEVVALVGPSGSGKSTVAALLQNLYQ-----PTGGQVLLDGVPLVQ  547 (711)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhccC-----CCCCEEEECCEEHHh
Confidence            6788999999999999999999999887     889999 57777653

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.32  E-value=5.1e-06  Score=75.67  Aligned_cols=61  Identities=16%  Similarity=0.238  Sum_probs=41.5

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCC--eEeecCCceE-eccccC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPC--EIISIDSALV-YCDMDI   79 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~--~iis~Ds~qv-y~g~~i   79 (298)
                      .+..|++ ...+.|+++     .-++|++++|+||||||||||++.|++.++.  ++  ..+|+| +.|.++
T Consensus        13 l~~~~~~-~~il~~is~-----~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i--~~~G~i~~~g~~i   76 (261)
T PRK14258         13 LSFYYDT-QKILEGVSM-----EIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEV--RVEGRVEFFNQNI   76 (261)
T ss_pred             EEEEeCC-eeEeeceEE-----EEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCc--cccceEEECCEEh
Confidence            3455643 234555544     3356789999999999999999999988751  11  136777 566655

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=98.32  E-value=4.6e-07  Score=81.17  Aligned_cols=60  Identities=18%  Similarity=0.232  Sum_probs=44.2

Q ss_pred             hcccCchh--hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQ--RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~--~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|+.+  ...+.++++     .-++|++++|+||||||||||++.|++.++     +++|+| +.|.++.
T Consensus         6 l~~~~~~~~~~~~l~~i~~-----~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~   68 (238)
T cd03249           6 VSFRYPSRPDVPILKGLSL-----TIPPGKTVALVGSSGCGKSTVVSLLERFYD-----PTSGEILLDGVDIR   68 (238)
T ss_pred             EEEecCCCCCccceeceEE-----EecCCCEEEEEeCCCCCHHHHHHHHhccCC-----CCCCEEEECCEehh
Confidence            45567542  235555554     224678999999999999999999998876     889998 5776554

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=98.32  E-value=5.3e-07  Score=78.63  Aligned_cols=58  Identities=17%  Similarity=0.241  Sum_probs=42.5

Q ss_pred             cccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          12 TETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      +..|++ ...++++++     .-.+|++++|+||||||||||++.|++.++     +++|+| +.|.++.
T Consensus         7 ~~~~~~-~~~l~~vsl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~   65 (198)
T TIGR01189         7 ACSRGE-RMLFEGLSF-----TLNAGEALQVTGPNGIGKTTLLRILAGLLR-----PDSGEVRWNGTALA   65 (198)
T ss_pred             EEEECC-EEEEeeeeE-----EEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCccEEEECCEEcc
Confidence            445543 345555554     224577899999999999999999998876     788988 5666654

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>KOG3354|consensus

Probab=98.32  E-value=2.4e-06  Score=71.67  Aligned_cols=137  Identities=18%  Similarity=0.246  Sum_probs=79.7

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCH---HHHcccccccccccCcCccchHHHH
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSI---IEREITPHHLIDIIEPTKSYSVIQF  111 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~---~e~~~v~~~l~~~~~~~e~~s~~~f  111 (298)
                      +-+.+++|+|++||||||+++.|+..++...+..|..           +|.+   .-.+++|      ++-.+.+   .|
T Consensus        10 ~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~-----------Hp~~NveKM~~Gip------LnD~DR~---pW   69 (191)
T KOG3354|consen   10 PFKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDL-----------HPPANVEKMTQGIP------LNDDDRW---PW   69 (191)
T ss_pred             CCceeEEEEecCCCChhhHHHHHHHHhCCcccccccC-----------CCHHHHHHHhcCCC------CCccccc---HH
Confidence            3455899999999999999999999999777766651           1211   1122232      1112223   25


Q ss_pred             HHHHHHhhHHHhhcCCceEEEchhHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhhCHHHHHHHHhcCCccccC------
Q psy8556         112 CEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTKFNIDINKYGISFLYDKLKLLDPVTAN------  185 (298)
Q Consensus       112 ~~~~~~~i~~i~~~~~~~IlvGGt~~y~~~ll~~~~~~p~~d~~lr~~l~~~~~~~g~~~l~~~L~~~Dp~~a~------  185 (298)
                      .......+..-...++..|+. ++.+                   +++.++.+..        -|+.-.|....      
T Consensus        70 L~~i~~~~~~~l~~~q~vVlA-CSaL-------------------Kk~YRdILr~--------sl~~gk~~~~~~~~l~f  121 (191)
T KOG3354|consen   70 LKKIAVELRKALASGQGVVLA-CSAL-------------------KKKYRDILRH--------SLKDGKPGKCPESQLHF  121 (191)
T ss_pred             HHHHHHHHHHHhhcCCeEEEE-hHHH-------------------HHHHHHHHHh--------hcccCCccCCccceEEE
Confidence            544433333333456665553 2222                   2222222111        11111111100      


Q ss_pred             --CCCChHHHHHHHHHHHHHHHhccchHHHHHHHHHh
Q psy8556         186 --QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKK  220 (298)
Q Consensus       186 --~~~~r~~L~~ri~~Rv~~M~~~G~l~~Ev~~l~~~  220 (298)
                        +..+++++-+|+..|-.+.+..- |++---+.++.
T Consensus       122 i~l~~s~evi~~Rl~~R~gHFMp~~-lleSQf~~LE~  157 (191)
T KOG3354|consen  122 ILLSASFEVILKRLKKRKGHFMPAD-LLESQFATLEA  157 (191)
T ss_pred             eeeeccHHHHHHHHhhcccccCCHH-HHHHHHHhccC
Confidence              45689999999999999999998 88888777766

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=98.32  E-value=3.5e-06  Score=83.78  Aligned_cols=41  Identities=15%  Similarity=0.103  Sum_probs=35.5

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+|++++|+||||||||||++.|++.++     +++|+| |.|.++.
T Consensus       277 ~~Ge~~~iiG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~g~~~~  318 (501)
T PRK11288        277 RAGEIVGLFGLVGAGRSELMKLLYGATR-----RTAGQVYLDGKPID  318 (501)
T ss_pred             eCCcEEEEEcCCCCCHHHHHHHHcCCCc-----CCCceEEECCEECC
Confidence            6788999999999999999999998876     789998 5676654

>smart00072 GuKc Guanylate kinase homologues

Probab=98.31  E-value=7.4e-07  Score=77.04  Aligned_cols=90  Identities=18%  Similarity=0.192  Sum_probs=57.6

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccch---------
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYS---------  107 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s---------  107 (298)
                      +.+++|+||+||||+|++..|....+      +.  +..-...+|..|.+.|..+..+++++...+.....         
T Consensus         2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~------~~--~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~   73 (184)
T smart00072        2 RRPIVLSGPSGVGKGTLLAELIQEIP------DA--FERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGE   73 (184)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhcCC------cc--eEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEE
Confidence            56899999999999999999988764      11  33334556777777787787777655322111000         


Q ss_pred             -HHHHHHHHHHhhHHHhhcCCceEEEch
Q psy8556         108 -VIQFCEDALFSIKNILKKKKLPLLVGG  134 (298)
Q Consensus       108 -~~~f~~~~~~~i~~i~~~~~~~IlvGG  134 (298)
                       .+.++......+.+....++.+|+.+.
T Consensus        74 ~~g~~YGt~~~~i~~~~~~~~~~ild~~  101 (184)
T smart00072       74 YSGNYYGTSKETIRQVAEQGKHCLLDID  101 (184)
T ss_pred             EcCcCcccCHHHHHHHHHcCCeEEEEEC
Confidence             122333344556677777888877654

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.31  E-value=6.7e-06  Score=74.77  Aligned_cols=64  Identities=17%  Similarity=0.171  Sum_probs=42.1

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|+. ...+.+++.     .-.+|++++|+|+||||||||++.|++.++..--..++|+| +.|.++.
T Consensus        13 l~~~~~~-~~il~~isl-----~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~   77 (259)
T PRK14260         13 LSFYYNT-SKAIEGISM-----DIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIY   77 (259)
T ss_pred             EEEEECC-eEeecceEE-----EEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEecc
Confidence            3455643 234455444     22467899999999999999999999976521000157888 5666653

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.31  E-value=5.5e-07  Score=79.19  Aligned_cols=58  Identities=21%  Similarity=0.237  Sum_probs=42.9

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDI   79 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i   79 (298)
                      .++.|++ ...+.++++     .-++|++++|+||||||||||++.|++...     +++|+| |.|.++
T Consensus         8 l~~~~~~-~~~l~~is~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~   66 (207)
T PRK13539          8 LACVRGG-RVLFSGLSF-----TLAAGEALVLTGPNGSGKTTLLRLIAGLLP-----PAAGTIKLDGGDI   66 (207)
T ss_pred             EEEEECC-eEEEeceEE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEeC
Confidence            4556654 345555554     224577899999999999999999998876     788988 566554

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=98.31  E-value=4.5e-06  Score=80.44  Aligned_cols=38  Identities=24%  Similarity=0.266  Sum_probs=33.3

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccc
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDM   77 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~   77 (298)
                      ++|++++|+||||||||||+++|++.+.     +++|+| +.|.
T Consensus        48 ~~Gei~~I~G~nGsGKSTLlr~L~Gl~~-----p~~G~I~idG~   86 (382)
T TIGR03415        48 EEGEICVLMGLSGSGKSSLLRAVNGLNP-----VSRGSVLVKDG   86 (382)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCcEEEECCE
Confidence            5688999999999999999999998876     889999 4553

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=1.1e-06  Score=75.90  Aligned_cols=55  Identities=24%  Similarity=0.331  Sum_probs=41.4

Q ss_pred             hhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe-ccccCCC
Q psy8556          17 QQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY-CDMDIGT   81 (298)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy-~g~~i~t   81 (298)
                      +++.+..++++     +-..|+.+.|.||||||||||++.||+++.     +++|+|| ++..+.+
T Consensus        13 ~e~~lf~~L~f-----~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~-----p~~G~v~~~~~~i~~   68 (209)
T COG4133          13 GERTLFSDLSF-----TLNAGEALQITGPNGAGKTTLLRILAGLLR-----PDAGEVYWQGEPIQN   68 (209)
T ss_pred             CcceeecceeE-----EEcCCCEEEEECCCCCcHHHHHHHHHcccC-----CCCCeEEecCCCCcc
Confidence            34444444544     334466899999999999999999999888     9999994 6666553

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.30  E-value=4.7e-07  Score=83.84  Aligned_cols=60  Identities=18%  Similarity=0.184  Sum_probs=44.7

Q ss_pred             hcccCchhh----hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQR----QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~----~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|+.+.    ..+.++++     .-.+|++++|+||||||||||++.|++.+.     +++|.| +.|.++.
T Consensus         7 v~~~y~~~~~~~~~~l~~vsl-----~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~   71 (288)
T PRK13643          7 VNYTYQPNSPFASRALFDIDL-----EVKKGSYTALIGHTGSGKSTLLQHLNGLLQ-----PTEGKVTVGDIVVS   71 (288)
T ss_pred             EEEEeCCCCcccccceeeeEE-----EEcCCCEEEEECCCCChHHHHHHHHhcCCC-----CCCcEEEECCEECc
Confidence            456676432    35555555     224577899999999999999999998876     889999 5777764

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=98.30  E-value=1.5e-06  Score=78.88  Aligned_cols=64  Identities=16%  Similarity=0.044  Sum_probs=43.2

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|++ ...+.++++     .-.+|++++|+||||||||||++.|++.+....-.+++|+| +.|.++.
T Consensus        10 v~~~~~~-~~~l~~isl-----~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~   74 (258)
T PRK14241         10 LNIYYGS-FHAVEDVNL-----NIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLY   74 (258)
T ss_pred             EEEEECC-EeeeeeeeE-----EEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEecc
Confidence            4556654 345555554     22457799999999999999999999876410001368888 5776653

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=98.30  E-value=5.7e-07  Score=80.51  Aligned_cols=60  Identities=17%  Similarity=0.151  Sum_probs=44.0

Q ss_pred             hcccCchh-hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQ-RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~-~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|+.+ ...+.++++     .-.+|++++|+||||||||||++.|++.+.     +++|+| +.|.++.
T Consensus         6 l~~~~~~~~~~~l~~isl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~   67 (237)
T cd03252           6 VRFRYKPDGPVILDNISL-----RIKPGEVVGIVGRSGSGKSTLTKLIQRFYV-----PENGRVLVDGHDLA   67 (237)
T ss_pred             EEEecCCCCccceeceEE-----EEcCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCCEEEECCeehH
Confidence            35566542 345555544     224677999999999999999999998876     788988 5776554

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.30  E-value=6.1e-06  Score=75.83  Aligned_cols=46  Identities=22%  Similarity=0.190  Sum_probs=34.2

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+|++++|+||||||||||++.|++.++...-.+++|+| +.|.++.
T Consensus        44 ~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~   90 (274)
T PRK14265         44 PAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIY   90 (274)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecc
Confidence            567899999999999999999999876411101257888 5776664

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=98.29  E-value=1.3e-06  Score=88.10  Aligned_cols=42  Identities=17%  Similarity=0.160  Sum_probs=36.8

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      ++|++++|+||||||||||++.|++.+.     +++|+| +.|.++..
T Consensus       366 ~~G~~~aivG~sGsGKSTl~~ll~g~~~-----p~~G~i~~~g~~i~~  408 (555)
T TIGR01194       366 AQGDIVFIVGENGCGKSTLAKLFCGLYI-----PQEGEILLDGAAVSA  408 (555)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCC
Confidence            6788999999999999999999998887     899999 57777653

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.29  E-value=7.4e-07  Score=77.77  Aligned_cols=62  Identities=16%  Similarity=0.282  Sum_probs=46.8

Q ss_pred             hhhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556           9 DRDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      ..++|.|..+- .+++.+.   .  -++|.+..|+||||+|||||+..++++++     .|+|.| ++|.++++
T Consensus         5 ~nv~K~y~~~~-vl~~isl---~--i~~g~iTs~IGPNGAGKSTLLS~~sRL~~-----~d~G~i~i~g~~~~~   67 (252)
T COG4604           5 ENVSKSYGTKV-VLDDVSL---D--IPKGGITSIIGPNGAGKSTLLSMMSRLLK-----KDSGEITIDGLELTS   67 (252)
T ss_pred             hhhhHhhCCEE-eecccee---e--ecCCceeEEECCCCccHHHHHHHHHHhcc-----ccCceEEEeeeeccc
Confidence            34566675543 2333333   2  25677999999999999999999999888     999999 58888864

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=98.29  E-value=9.8e-07  Score=78.90  Aligned_cols=59  Identities=15%  Similarity=0.118  Sum_probs=43.1

Q ss_pred             cccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          12 TETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      +..|++ ..++.+++.     .-.+|++++|+||||||||||++.|++.++     +++|+| +.|.++..
T Consensus         7 ~~~~~~-~~il~~i~~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~   66 (232)
T cd03300           7 SKFYGG-FVALDGVSL-----DIKEGEFFTLLGPSGCGKTTLLRLIAGFET-----PTSGEILLDGKDITN   66 (232)
T ss_pred             EEEeCC-eeeeccceE-----EECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEEcCc
Confidence            445553 245555544     224678999999999999999999998876     788888 56766643

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=98.29  E-value=5.3e-07  Score=89.62  Aligned_cols=60  Identities=13%  Similarity=0.204  Sum_probs=45.2

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      ..++.|++ ...++++++     .-.+|++++|+||||||||||++.|++.+.     +++|+| +.|.++.
T Consensus         9 ~l~~~~~~-~~~l~~is~-----~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~   69 (501)
T PRK10762          9 GIDKAFPG-VKALSGAAL-----NVYPGRVMALVGENGAGKSTMMKVLTGIYT-----RDAGSILYLGKEVT   69 (501)
T ss_pred             eeEEEeCC-eEEeeeeeE-----EEcCCeEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECC
Confidence            34566754 346666665     123577899999999999999999998876     889998 5776664

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.29  E-value=6.6e-07  Score=79.07  Aligned_cols=60  Identities=7%  Similarity=0.073  Sum_probs=44.4

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      ..+..|++ ..++.++++     .-.+|++++|+||||||||||++.|++.+.     +++|+| +.|.++.
T Consensus        16 ~l~~~~~~-~~il~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~i~   76 (214)
T PRK13543         16 ALAFSRNE-EPVFGPLDF-----HVDAGEALLVQGDNGAGKTTLLRVLAGLLH-----VESGQIQIDGKTAT   76 (214)
T ss_pred             eEEEecCC-ceeeecceE-----EECCCCEEEEEcCCCCCHHHHHHHHhCCCC-----CCCeeEEECCEEcc
Confidence            34555654 335555554     224677899999999999999999998876     888998 6776664

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.29  E-value=1.5e-06  Score=78.65  Aligned_cols=64  Identities=13%  Similarity=0.086  Sum_probs=43.6

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|++ ...+.++++     .-.+|++++|+||||||||||++.|++.+...-..+++|+| +.|.++.
T Consensus        10 l~~~~~~-~~~l~~is~-----~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~   74 (253)
T PRK14267         10 LRVYYGS-NHVIKGVDL-----KIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIY   74 (253)
T ss_pred             EEEEeCC-eeeeecceE-----EEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcc
Confidence            4556654 345555554     22457789999999999999999999876510001258988 5777664

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=98.28  E-value=6.5e-07  Score=80.77  Aligned_cols=59  Identities=19%  Similarity=0.187  Sum_probs=43.9

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|++ ..++.++++     .-.+|++++|+||||||||||++.|++.+.     +++|.| +.|.++.
T Consensus         9 l~~~~~~-~~~l~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~   68 (250)
T PRK11264          9 LVKKFHG-QTVLHGIDL-----EVKPGEVVAIIGPSGSGKTTLLRCINLLEQ-----PEAGTIRVGDITID   68 (250)
T ss_pred             eEEEECC-eeeeccceE-----EEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEcc
Confidence            3556654 345666555     224577899999999999999999998776     788988 5666654

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=98.28  E-value=7.4e-07  Score=79.34  Aligned_cols=40  Identities=23%  Similarity=0.337  Sum_probs=34.1

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDI   79 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i   79 (298)
                      ++|++++|+||||||||||++.|++.+.     +++|+| +.|.++
T Consensus         4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~   44 (223)
T TIGR03771         4 DKGELLGLLGPNGAGKTTLLRAILGLIP-----PAKGTVKVAGASP   44 (223)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCccc
Confidence            4688999999999999999999998776     788888 566543

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.28  E-value=1.6e-06  Score=78.45  Aligned_cols=65  Identities=15%  Similarity=0.075  Sum_probs=43.3

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      .+..|++ ...++++++     .-.+|++++|+||||||||||++.|++........+++|+| +.|.++..
T Consensus        10 l~~~~~~-~~~l~~isl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~   75 (251)
T PRK14270         10 LNLWYGE-KQALNDINL-----PIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYD   75 (251)
T ss_pred             eEEEECC-eeeeeceeE-----EEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccc
Confidence            3455653 345555554     22467899999999999999999999876410000267888 57776643

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=98.28  E-value=6.6e-07  Score=79.92  Aligned_cols=45  Identities=24%  Similarity=0.279  Sum_probs=35.5

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      ++|++++|+||||||||||++.|++.+... ..+++|+| +.|.++.
T Consensus        10 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~~~~~G~i~~~g~~~~   55 (230)
T TIGR02770        10 KRGEVLALVGESGSGKSLTCLAILGLLPPG-LTQTSGEILLDGRPLL   55 (230)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCCc-cCccccEEEECCEech
Confidence            568899999999999999999999887611 11289999 5776654

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.28  E-value=4.7e-07  Score=81.69  Aligned_cols=64  Identities=17%  Similarity=0.114  Sum_probs=45.1

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      ..+..|++ ...+.++++     .-.+|++++|+||||||||||++.|++.+..  ..+++|+| +.|.++..
T Consensus         7 ~l~~~~~~-~~~l~~isl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~~~~G~i~~~g~~i~~   71 (246)
T PRK14269          7 NLNLFYGK-KQALFDINM-----QIEQNKITALIGASGCGKSTFLRCFNRMNDK--IAKIDGLVEIEGKDVKN   71 (246)
T ss_pred             eeEEEECC-EeeeeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCCCceEEEECCEeccc
Confidence            34667764 355566555     2235778999999999999999999987531  12578888 57777653

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=98.28  E-value=1.5e-06  Score=87.59  Aligned_cols=41  Identities=22%  Similarity=0.355  Sum_probs=36.4

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      ++|+.++|+||||||||||++.|++.+.     +++|+| +.|.++.
T Consensus       364 ~~Ge~i~IvG~sGsGKSTLlklL~gl~~-----p~~G~I~i~g~~i~  405 (576)
T TIGR02204       364 RPGETVALVGPSGAGKSTLFQLLLRFYD-----PQSGRILLDGVDLR  405 (576)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhccC-----CCCCEEEECCEEHH
Confidence            7889999999999999999999999887     788998 5777665

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.27  E-value=9e-07  Score=75.69  Aligned_cols=64  Identities=22%  Similarity=0.160  Sum_probs=46.4

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe-ccccCC
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY-CDMDIG   80 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy-~g~~i~   80 (298)
                      ..+++-+++...++=++-+....  ++|+.++|+||||||||||+..||++-.     ++||+|+ .|.+..
T Consensus        11 ~l~ktvg~~~~~l~IL~~V~L~v--~~Ge~vaiVG~SGSGKSTLl~vlAGLd~-----~ssGeV~l~G~~L~   75 (228)
T COG4181          11 HLSKTVGQGEGELSILKGVELVV--KRGETVAIVGPSGSGKSTLLAVLAGLDD-----PSSGEVRLLGQPLH   75 (228)
T ss_pred             hhhhhhcCCCcceeEeecceEEe--cCCceEEEEcCCCCcHHhHHHHHhcCCC-----CCCceEEEcCcchh
Confidence            34566666665444444433222  5678899999999999999999998876     8999995 666654

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.27  E-value=1.7e-06  Score=78.25  Aligned_cols=64  Identities=20%  Similarity=0.135  Sum_probs=43.1

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|+. ...+.|+++     .-.+|++++|+||||||||||++.|++.+......+++|.| +.|.++.
T Consensus        10 l~~~~~~-~~~l~~isl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~   74 (252)
T PRK14256         10 LNVHFGK-NHAVKDVSM-----DFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIY   74 (252)
T ss_pred             EEEEeCC-eeEEecceE-----EEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcc
Confidence            3556653 346666655     22457789999999999999999999876310001257877 5776664

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=98.27  E-value=6.9e-07  Score=80.81  Aligned_cols=59  Identities=22%  Similarity=0.229  Sum_probs=43.7

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|++ ...+.++++     .-.+|++++|+||||||||||++.|++.+.     +++|+| +.|.++.
T Consensus         6 l~~~~~~-~~~l~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~i~   65 (252)
T TIGR03005         6 VTKRFGI-LTVLDGLNF-----SVAAGEKVALIGPSGSGKSTILRILMTLEP-----IDEGQIQVEGEQLY   65 (252)
T ss_pred             EEEEeCC-eeEEeeeeE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEcc
Confidence            4556653 345555554     224677899999999999999999998776     789988 5776653

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=98.27  E-value=2.1e-06  Score=95.69  Aligned_cols=43  Identities=26%  Similarity=0.298  Sum_probs=37.7

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTN   82 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~   82 (298)
                      ++|+.++|+|+||||||||++.|.+.+.     +++|+| ..|.++.+-
T Consensus      1310 ~~GekiaIVGrTGsGKSTL~~lL~rl~~-----~~~G~I~IdG~dI~~i 1353 (1522)
T TIGR00957      1310 HGGEKVGIVGRTGAGKSSLTLGLFRINE-----SAEGEIIIDGLNIAKI 1353 (1522)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCcc-----CCCCeEEECCEEcccc
Confidence            5678899999999999999999998877     889999 688888643

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=98.27  E-value=1.5e-06  Score=78.77  Aligned_cols=59  Identities=19%  Similarity=0.222  Sum_probs=44.1

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|++ ...+.++++     .-.+|++++|+||||||||||++.|++.++     +++|.| +.|.++.
T Consensus         7 l~~~~~~-~~il~~is~-----~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~   66 (256)
T TIGR03873         7 VSWSAGG-RLIVDGVDV-----TAPPGSLTGLLGPNGSGKSTLLRLLAGALR-----PDAGTVDLAGVDLH   66 (256)
T ss_pred             EEEEECC-EEEEeeeeE-----EEcCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCCCEEEECCEEcc
Confidence            3556654 346666655     224577999999999999999999998876     788988 5676654

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.27  E-value=1e-06  Score=79.79  Aligned_cols=64  Identities=14%  Similarity=0.082  Sum_probs=42.9

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|++ ..+++++++     .-.+|++++|+||||||||||++.|++.+...--.+++|+| +.|.++.
T Consensus        13 l~~~~~~-~~il~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~   77 (254)
T PRK14273         13 LNLFYTD-FKALNNINI-----KILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIY   77 (254)
T ss_pred             eEEEeCC-ceeecceee-----EEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecc
Confidence            3455653 345566555     22457789999999999999999999877511000257888 5676654

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=98.27  E-value=6.1e-07  Score=83.86  Aligned_cols=58  Identities=16%  Similarity=0.178  Sum_probs=42.5

Q ss_pred             hcccCchhh----hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-ecccc
Q psy8556          11 DTETDPQQR----QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMD   78 (298)
Q Consensus        11 ~~~~~~~~~----~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~   78 (298)
                      .+..|+++.    ..+.++++     .-.+|++++|+||||||||||++.|++.+.     +++|+| +.|.+
T Consensus         8 l~~~y~~~~~~~~~~l~~vsl-----~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~-----p~~G~i~~~g~~   70 (305)
T PRK13651          8 IVKIFNKKLPTELKALDNVSV-----EINQGEFIAIIGQTGSGKTTFIEHLNALLL-----PDTGTIEWIFKD   70 (305)
T ss_pred             EEEEECCCCCccccceeeeEE-----EEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCcEEEEecee
Confidence            456676532    35666555     224577899999999999999999998876     788888 45443

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=98.27  E-value=8.3e-07  Score=78.86  Aligned_cols=60  Identities=23%  Similarity=0.272  Sum_probs=43.7

Q ss_pred             hcccCchh--hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQ--RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~--~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|++.  ...+.+++.     .-++|++++|+||||||||||++.|++.++     +++|+| +.|.++.
T Consensus        17 l~~~~~~~~~~~~l~~is~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~   79 (226)
T cd03248          17 VTFAYPTRPDTLVLQDVSF-----TLHPGEVTALVGPSGSGKSTVVALLENFYQ-----PQGGQVLLDGKPIS   79 (226)
T ss_pred             EEEEeCCCCCCccccceEE-----EEcCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCcEEEECCCchH
Confidence            35566542  245555554     224577899999999999999999998876     788988 5665553

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=98.27  E-value=7.4e-07  Score=79.53  Aligned_cols=59  Identities=25%  Similarity=0.335  Sum_probs=43.5

Q ss_pred             cccCchhh-hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          12 TETDPQQR-QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        12 ~~~~~~~~-~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      +..|++.+ ..+.++++     .-++|++++|+||||||||||++.|++.+.     +++|+| +.|.++.
T Consensus         7 ~~~~~~~~~~~l~~i~~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~   67 (234)
T cd03251           7 TFRYPGDGPPVLRDISL-----DIPAGETVALVGPSGSGKSTLVNLIPRFYD-----VDSGRILIDGHDVR   67 (234)
T ss_pred             EEEeCCCCccceeeeeE-----EEcCCCEEEEECCCCCCHHHHHHHHhcccc-----CCCCEEEECCEEhh
Confidence            45565442 45556555     224577899999999999999999998876     789998 5676554

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=98.27  E-value=6e-06  Score=84.38  Aligned_cols=42  Identities=17%  Similarity=0.347  Sum_probs=36.4

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      .+|++++|+||||||||||++.|++.+.     +++|+| |.|.++..
T Consensus       348 ~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~-----p~~G~I~~~g~~i~~  390 (623)
T PRK10261        348 WPGETLSLVGESGSGKSTTGRALLRLVE-----SQGGEIIFNGQRIDT  390 (623)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCcEEEECCEECCc
Confidence            5688999999999999999999998876     889999 67777653

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=98.27  E-value=6e-07  Score=79.57  Aligned_cols=60  Identities=15%  Similarity=0.149  Sum_probs=44.0

Q ss_pred             hcccCchh---hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe-ccccCC
Q psy8556          11 DTETDPQQ---RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY-CDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~---~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy-~g~~i~   80 (298)
                      .+..|+.+   ..++.++++     .-.+|++++|+||||||||||++.|++.++     +++|+|+ .|.++.
T Consensus         7 l~~~~~~~~~~~~il~~vs~-----~i~~G~~~~I~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~g~~~~   70 (220)
T TIGR02982         7 LNHYYGHGSLRKQVLFDINL-----EINPGEIVILTGPSGSGKTTLLTLIGGLRS-----VQEGSLKVLGQELY   70 (220)
T ss_pred             EEEEccCCCcceeEEeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEEhH
Confidence            35566543   345555554     224577899999999999999999998776     8899984 666654

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=98.26  E-value=4.3e-06  Score=83.51  Aligned_cols=45  Identities=16%  Similarity=0.189  Sum_probs=35.5

Q ss_pred             hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556          20 QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY   74 (298)
Q Consensus        20 ~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy   74 (298)
                      ..+.++++     .-.+|++++|+||||||||||++.|++.++     +++|.|+
T Consensus       298 ~il~~is~-----~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~-----p~~G~i~  342 (520)
T TIGR03269       298 KAVDNVSL-----EVKEGEIFGIVGTSGAGKTTLSKIIAGVLE-----PTSGEVN  342 (520)
T ss_pred             eEEeeEEE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEE
Confidence            34555554     224577899999999999999999998876     7889985

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.26  E-value=7.8e-07  Score=80.94  Aligned_cols=46  Identities=17%  Similarity=0.199  Sum_probs=39.4

Q ss_pred             ccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          31 GKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        31 ~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      +..-++|++++|+|.|||||||+++.|.++..     +++|+| |+|.++..
T Consensus        33 sf~i~~ge~~glVGESG~GKSTlgr~i~~L~~-----pt~G~i~f~g~~i~~   79 (268)
T COG4608          33 SFSIKEGETLGLVGESGCGKSTLGRLILGLEE-----PTSGEILFEGKDITK   79 (268)
T ss_pred             eEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC-----CCCceEEEcCcchhh
Confidence            33447788999999999999999999998887     899999 68887653

>PTZ00243 ABC transporter; Provisional

Probab=98.26  E-value=2e-06  Score=95.94  Aligned_cols=43  Identities=28%  Similarity=0.411  Sum_probs=37.8

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTN   82 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~   82 (298)
                      ++|+.|+|+|+||||||||++.|.+.+.     +++|+| ..|.++.+-
T Consensus      1334 ~~GekVaIVGrTGSGKSTLl~lLlrl~~-----p~~G~I~IDG~di~~i 1377 (1560)
T PTZ00243       1334 APREKVGIVGRTGSGKSTLLLTFMRMVE-----VCGGEIRVNGREIGAY 1377 (1560)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEEcccC
Confidence            5778899999999999999999998887     889999 688888753

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=98.26  E-value=1.1e-06  Score=87.50  Aligned_cols=61  Identities=16%  Similarity=0.103  Sum_probs=42.1

Q ss_pred             hcccCch--hhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQ--QRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~--~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .++.|++  +...++++++     .-++|++++|+||||||||||++.|++.+.    .+++|+| +.|.++.
T Consensus       265 l~~~~~~~~~~~vl~~vsl-----~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~----~~~~G~i~~~g~~~~  328 (506)
T PRK13549        265 LTAWDPVNPHIKRVDDVSF-----SLRRGEILGIAGLVGAGRTELVQCLFGAYP----GRWEGEIFIDGKPVK  328 (506)
T ss_pred             Cccccccccccccccceee-----EEcCCcEEEEeCCCCCCHHHHHHHHhCCCC----CCCCcEEEECCEECC
Confidence            3445542  2334555544     225677899999999999999999998764    0378998 5676664

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=98.26  E-value=1.5e-06  Score=74.49  Aligned_cols=34  Identities=24%  Similarity=0.522  Sum_probs=30.4

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      ...|+|+||+||||||+++.|++.++..+++.|.
T Consensus         4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~   37 (172)
T PRK05057          4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ   37 (172)
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence            4469999999999999999999999988887775

>PLN03130 ABC transporter C family member; Provisional

Probab=98.26  E-value=2e-06  Score=96.14  Aligned_cols=42  Identities=26%  Similarity=0.348  Sum_probs=37.4

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      ++|+.|+|+|+||||||||++.|.+.+.     +++|+| ..|.++.+
T Consensus      1263 ~~GekVaIVGrSGSGKSTLl~lL~rl~~-----p~~G~I~IDG~dI~~ 1305 (1622)
T PLN03130       1263 SPSEKVGIVGRTGAGKSSMLNALFRIVE-----LERGRILIDGCDISK 1305 (1622)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCcCC-----CCCceEEECCEeccc
Confidence            6677899999999999999999998887     889999 58888864

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=98.26  E-value=7.5e-07  Score=78.86  Aligned_cols=35  Identities=17%  Similarity=0.164  Sum_probs=30.8

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY   74 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy   74 (298)
                      ++|++++|+||||||||||++.|++.+.     +++|+|+
T Consensus        11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----~~sG~i~   45 (213)
T PRK15177         11 GYHEHIGILAAPGSGKTTLTRLLCGLDA-----PDEGDFI   45 (213)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCcc-----CCCCCEE
Confidence            5578999999999999999999998766     7888874

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=98.25  E-value=5.6e-07  Score=84.87  Aligned_cols=66  Identities=17%  Similarity=0.162  Sum_probs=46.2

Q ss_pred             hhcccCchhh---hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          10 RDTETDPQQR---QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        10 ~~~~~~~~~~---~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      ..+.+|+...   ..+.|+++     .-.+|++++|+|+||||||||++.|++.+... -.+++|+| |.|.++..
T Consensus         8 ~l~~~~~~~~~~~~~l~~vsl-----~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~-~~~~~G~i~~~G~~i~~   77 (326)
T PRK11022          8 KLSVHFGDESAPFRAVDRISY-----SVKQGEVVGIVGESGSGKSVSSLAIMGLIDYP-GRVMAEKLEFNGQDLQR   77 (326)
T ss_pred             CeEEEECCCCccEEEEeeeEE-----EECCCCEEEEECCCCChHHHHHHHHHcCCCCC-CCCcceEEEECCEECCc
Confidence            3456675432   35555555     23557789999999999999999999987521 11468888 78887754

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.24  E-value=1.7e-06  Score=78.12  Aligned_cols=64  Identities=16%  Similarity=0.166  Sum_probs=42.3

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|++ ...+.++++     .-++|++++|+||||||||||++.|++.++...-.+++|+| +.|.++.
T Consensus         9 l~~~~~~-~~~l~~i~~-----~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~   73 (250)
T PRK14262          9 FSAYYGE-KKAVKNVTM-----KIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIY   73 (250)
T ss_pred             eEEEeCC-ceeEeeeeE-----eecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcc
Confidence            3455653 344455444     22457799999999999999999999876410001378888 5666654

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=98.24  E-value=9.9e-07  Score=77.20  Aligned_cols=59  Identities=19%  Similarity=0.170  Sum_probs=42.7

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|++ ..+++++++     .-++|++++|+|+||||||||++.|++.+.     +++|+| +.|.++.
T Consensus         6 l~~~~~~-~~~l~~isl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~   65 (201)
T cd03231           6 LTCERDG-RALFSGLSF-----TLAAGEALQVTGPNGSGKTTLLRILAGLSP-----PLAGRVLLNGGPLD   65 (201)
T ss_pred             EEEEeCC-ceeeccceE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEecc
Confidence            3455654 345555554     224577899999999999999999998876     788888 4665543

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=98.24  E-value=9.7e-07  Score=73.43  Aligned_cols=52  Identities=19%  Similarity=0.266  Sum_probs=38.4

Q ss_pred             cccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556          12 TETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY   74 (298)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy   74 (298)
                      +..|++. ..+.++++     .-++|++++|+||||||||||++.|++.++     +++|+|+
T Consensus         7 ~~~~~~~-~~l~~~~~-----~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~-----~~~G~i~   58 (144)
T cd03221           7 SKTYGGK-LLLKDISL-----TINPGDRIGLVGRNGAGKSTLLKLIAGELE-----PDEGIVT   58 (144)
T ss_pred             EEEECCc-eEEEeeEE-----EECCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCceEEE
Confidence            4455442 34444443     235678999999999999999999998876     7888884

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=98.23  E-value=5.7e-07  Score=90.34  Aligned_cols=42  Identities=19%  Similarity=0.248  Sum_probs=37.0

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      ++|+.++|+||||||||||++.|++.+.     +++|+| +.|.++..
T Consensus       347 ~~G~~~aivG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~~~~  389 (547)
T PRK10522        347 KRGELLFLIGGNGSGKSTLAMLLTGLYQ-----PQSGEILLDGKPVTA  389 (547)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEECCC
Confidence            6788999999999999999999999887     899999 67777653

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.23  E-value=1e-06  Score=81.12  Aligned_cols=61  Identities=16%  Similarity=0.099  Sum_probs=45.3

Q ss_pred             hhcccCchh--hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          10 RDTETDPQQ--RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        10 ~~~~~~~~~--~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      ..+..|+.+  ...+.++++     .-.+|++++|+||||||||||++.|++.+.     +++|+| +.|.++.
T Consensus         9 ~l~~~~~~~~~~~~l~~vsl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~   72 (279)
T PRK13650          9 NLTFKYKEDQEKYTLNDVSF-----HVKQGEWLSIIGHNGSGKSTTVRLIDGLLE-----AESGQIIIDGDLLT   72 (279)
T ss_pred             eEEEEcCCCCcCeeeeeeEE-----EEeCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEECC
Confidence            456677642  235555554     224577899999999999999999998876     889998 5777764

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=98.23  E-value=3.5e-06  Score=95.23  Aligned_cols=141  Identities=12%  Similarity=-0.025  Sum_probs=79.7

Q ss_pred             hcccCchh-hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCC-HH
Q psy8556          11 DTETDPQQ-RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPS-II   87 (298)
Q Consensus        11 ~~~~~~~~-~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~-~~   87 (298)
                      .++.|+++ ...++++++     .-++|++++|+||||||||||++.|++.+.     +++|+| +.|.++.+.... ..
T Consensus      1943 LsK~Y~~~~~~aL~~ISf-----~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~-----ptsG~I~i~G~~i~~~~~~~r~ 2012 (2272)
T TIGR01257      1943 LTKVYSGTSSPAVDRLCV-----GVRPGECFGLLGVNGAGKTTTFKMLTGDTT-----VTSGDATVAGKSILTNISDVHQ 2012 (2272)
T ss_pred             EEEEECCCCceEEEeeEE-----EEcCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCccEEEECCEECcchHHHHhh
Confidence            35566543 344555544     225578999999999999999999998876     899999 578777531100 01


Q ss_pred             HHcccccccccccCcCccchHHHHHHH-----------HHHhhHHHh--------hcCCceEEEchhH---HHHHHHHcc
Q psy8556          88 EREITPHHLIDIIEPTKSYSVIQFCED-----------ALFSIKNIL--------KKKKLPLLVGGTM---LYFKALRDG  145 (298)
Q Consensus        88 e~~~v~~~l~~~~~~~e~~s~~~f~~~-----------~~~~i~~i~--------~~~~~~IlvGGt~---~y~~~ll~~  145 (298)
                      .+..+++.    ....+.+++.+....           ..+.+.++.        ...++--++||..   ....|++.+
T Consensus      2013 ~IGy~pQ~----~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~ 2088 (2272)
T TIGR01257      2013 NMGYCPQF----DAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGC 2088 (2272)
T ss_pred             hEEEEecc----ccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence            12223332    111223333332211           011111111        1222335788877   466888865


Q ss_pred             ----CCCCCCC--CHHHHHHHHHHHH
Q psy8556         146 ----INKLPPA--NLKLRTKFNIDIN  165 (298)
Q Consensus       146 ----~~~~p~~--d~~lr~~l~~~~~  165 (298)
                          +.|.|.+  |+.-|+.+.+.+.
T Consensus      2089 P~VLLLDEPTsGLDp~sr~~l~~lL~ 2114 (2272)
T TIGR01257      2089 PPLVLLDEPTTGMDPQARRMLWNTIV 2114 (2272)
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHH
Confidence                4466754  8888887766554

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=98.23  E-value=2.1e-06  Score=80.99  Aligned_cols=34  Identities=24%  Similarity=0.441  Sum_probs=29.6

Q ss_pred             EECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          42 ILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        42 I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      |+||||||||||++.|++.+.     +++|+| +.|.++.
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~-----p~~G~I~i~g~~i~   35 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQ-----PDSGSIMLDGEDVT   35 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCC-----CCceEEEECCEECC
Confidence            689999999999999998876     889999 5777664

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=98.23  E-value=1.1e-06  Score=78.08  Aligned_cols=58  Identities=14%  Similarity=0.187  Sum_probs=42.4

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDI   79 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i   79 (298)
                      .+..|+. ...+.++++     .-.+|++++|+||||||||||++.|++.++     +++|+| +.|.++
T Consensus         6 v~~~~~~-~~~l~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~~~~~   64 (223)
T TIGR03740         6 LSKRFGK-QTAVNNISL-----TVPKNSVYGLLGPNGAGKSTLLKMITGILR-----PTSGEIIFDGHPW   64 (223)
T ss_pred             EEEEECC-EEEEeeeEE-----EEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEec
Confidence            4555653 345555554     224577899999999999999999998776     889988 566554

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=98.23  E-value=1.9e-06  Score=80.09  Aligned_cols=50  Identities=24%  Similarity=0.274  Sum_probs=37.7

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCC
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNK   83 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~k   83 (298)
                      -++|++++|+|.||||||++++.|.++++..--...+|.| |+|.++.+..
T Consensus        28 i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~   78 (316)
T COG0444          28 LKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLS   78 (316)
T ss_pred             EcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCC
Confidence            3668899999999999999999999999721111235566 8998877443

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=98.23  E-value=3.4e-06  Score=84.42  Aligned_cols=41  Identities=17%  Similarity=0.291  Sum_probs=33.5

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      .+|++++|+||||||||||++.|++.+      +++|.| +.|.++..
T Consensus       310 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~------~~~G~i~~~g~~i~~  351 (529)
T PRK15134        310 RPGETLGLVGESGSGKSTTGLALLRLI------NSQGEIWFDGQPLHN  351 (529)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCcC------CCCcEEEECCEEccc
Confidence            567789999999999999999999764      268888 57766643

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=98.23  E-value=9.3e-07  Score=80.63  Aligned_cols=53  Identities=13%  Similarity=0.138  Sum_probs=39.4

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY   74 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy   74 (298)
                      .+..|++ ..++.++++     .-.+|++++|+||||||||||++.|++.+.     +++|+|+
T Consensus        18 l~~~~~~-~~il~~isl-----~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~-----p~~G~i~   70 (257)
T PRK11247         18 VSKRYGE-RTVLNQLDL-----HIPAGQFVAVVGRSGCGKSTLLRLLAGLET-----PSAGELL   70 (257)
T ss_pred             EEEEECC-cceeeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEE
Confidence            3455653 345555554     224577899999999999999999998876     7888884

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=98.23  E-value=2.1e-06  Score=78.92  Aligned_cols=58  Identities=16%  Similarity=0.166  Sum_probs=41.7

Q ss_pred             cccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecC--------CceE-eccccCC
Q psy8556          12 TETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISID--------SALV-YCDMDIG   80 (298)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~D--------s~qv-y~g~~i~   80 (298)
                      +..|++ ..++.++++     .-.+|++++|+||||||||||++.|++.+.     ++        +|+| +.|.++.
T Consensus         8 ~~~~~~-~~il~~vsl-----~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~-----p~~~~~~~~~~G~i~~~g~~~~   74 (272)
T PRK13547          8 HVARRH-RAILRDLSL-----RIEPGRVTALLGRNGAGKSTLLKALAGDLT-----GGGAPRGARVTGDVTLNGEPLA   74 (272)
T ss_pred             EEEECC-EeEEecceE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CcccccccCCceEEEECCEEcc
Confidence            445543 345556555     223577899999999999999999998875     55        7888 5666654

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=98.22  E-value=1.1e-06  Score=77.05  Aligned_cols=60  Identities=17%  Similarity=0.256  Sum_probs=43.9

Q ss_pred             hcccCchh-hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQ-RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~-~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|+.+ ...+.+++.     .-.+|++++|+||||||||||++.|++.+.     +++|.| +.|.++.
T Consensus        12 l~~~~~~~~~~~l~~isl-----~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~   73 (207)
T cd03369          12 LSVRYAPDLPPVLKNVSF-----KVKAGEKIGIVGRTGAGKSTLILALFRFLE-----AEEGKIEIDGIDIS   73 (207)
T ss_pred             EEEEeCCCCcccccCceE-----EECCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCCeEEECCEEhH
Confidence            34556643 245555554     224577899999999999999999998876     788988 5776654

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=98.22  E-value=2.7e-06  Score=77.82  Aligned_cols=64  Identities=19%  Similarity=0.056  Sum_probs=43.0

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|++ ..++.++++     .-++|++++|+||||||||||++.|++.++..-=.+++|+| +.|.++.
T Consensus        25 l~~~~~~-~~il~~isl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~   89 (267)
T PRK14235         25 VSVFYGE-KQALFDVDL-----DIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIY   89 (267)
T ss_pred             EEEEECC-EEEEEEEEE-----EEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECc
Confidence            4555653 345555554     22457789999999999999999999876410001378888 5776664

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=98.22  E-value=2.4e-06  Score=77.77  Aligned_cols=64  Identities=11%  Similarity=0.021  Sum_probs=43.3

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|++ ..++.++++     .-++|++++|+||||||||||++.|++.+...-..+++|.| +.|.++.
T Consensus        19 l~~~~~~-~~il~~isl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~   83 (260)
T PRK10744         19 LNFYYGK-FHALKNINL-----DIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENIL   83 (260)
T ss_pred             EEEEeCC-eEEeeceeE-----EEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcc
Confidence            4556654 345555554     22457789999999999999999999875310012478888 5666654

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.22  E-value=1.1e-05  Score=75.25  Aligned_cols=46  Identities=22%  Similarity=0.159  Sum_probs=34.2

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+|++++|+||||||||||++.|++.+....-.+++|.| +.|.++.
T Consensus        69 ~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~  115 (305)
T PRK14264         69 PEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIY  115 (305)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence            578899999999999999999999875300001468888 4666654

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=98.21  E-value=7.6e-07  Score=88.21  Aligned_cols=60  Identities=20%  Similarity=0.067  Sum_probs=44.1

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      ..+..|++ ...+.++++     .-.+|++++|+||||||||||++.|++.+.     +++|+| +.|.++.
T Consensus         8 ~l~~~~~~-~~il~~vsl-----~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~-----p~~G~i~~~~~~~~   68 (490)
T PRK10938          8 QGTFRLSD-TKTLQLPSL-----TLNAGDSWAFVGANGSGKSALARALAGELP-----LLSGERQSQFSHIT   68 (490)
T ss_pred             eEEEEcCC-eeecccceE-----EEcCCCEEEEECCCCCCHHHHHHHHhccCC-----CCCceEEECCcccc
Confidence            35667764 345666655     224577899999999999999999998776     788988 4565543

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=98.21  E-value=3.1e-06  Score=85.22  Aligned_cols=41  Identities=27%  Similarity=0.353  Sum_probs=36.0

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      ++|+.++|+|+||||||||++.|++.+.     +++|+| +.|.++.
T Consensus       356 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~-----~~~G~I~i~g~~i~  397 (571)
T TIGR02203       356 EPGETVALVGRSGSGKSTLVNLIPRFYE-----PDSGQILLDGHDLA  397 (571)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhccC-----CCCCeEEECCEeHH
Confidence            6788999999999999999999999887     889999 4776654

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=98.21  E-value=1.3e-06  Score=79.08  Aligned_cols=57  Identities=18%  Similarity=0.153  Sum_probs=41.5

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-ecccc
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMD   78 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~   78 (298)
                      .+..|++. ..+.++++     .-++|++++|+||||||||||++.|++.++     +++|.| +.|.+
T Consensus         9 l~~~~~~~-~~l~~isl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~   66 (253)
T TIGR02323         9 LSKSYGGG-KGCRDVSF-----DLYPGEVLGIVGESGSGKSTLLGCLAGRLA-----PDHGTATYIMRS   66 (253)
T ss_pred             eEEEeCCc-eEeecceE-----EEeCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEEeccc
Confidence            35566542 34444444     224577999999999999999999998876     788988 56654

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.20  E-value=1.3e-06  Score=82.32  Aligned_cols=61  Identities=16%  Similarity=0.142  Sum_probs=45.2

Q ss_pred             hcccCchh----hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          11 DTETDPQQ----RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        11 ~~~~~~~~----~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      .+..|+++    ...+.+++.     .-.+|++++|+||||||||||++.|++.+.     +++|+| +.|.++..
T Consensus        27 l~~~y~~~~~~~~~~L~~vsl-----~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~-----p~~G~I~i~g~~~~~   92 (320)
T PRK13631         27 LYCVFDEKQENELVALNNISY-----TFEKNKIYFIIGNSGSGKSTLVTHFNGLIK-----SKYGTIQVGDIYIGD   92 (320)
T ss_pred             EEEEeCCCCcccccceeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEEECCEEccc
Confidence            45567543    235666555     224577899999999999999999998876     889998 57766643

>PLN03211 ABC transporter G-25; Provisional

Probab=98.20  E-value=3.6e-06  Score=86.54  Aligned_cols=59  Identities=19%  Similarity=0.202  Sum_probs=41.5

Q ss_pred             cccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccC
Q psy8556          12 TETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDI   79 (298)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i   79 (298)
                      ++.|++ ..++++++.     .-++|++++|+||||||||||++.|++.+...   ..+|+| +.|.++
T Consensus        75 ~~~~~~-~~iL~~vs~-----~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~---~~sG~I~inG~~~  134 (659)
T PLN03211         75 TRQIQE-RTILNGVTG-----MASPGEILAVLGPSGSGKSTLLNALAGRIQGN---NFTGTILANNRKP  134 (659)
T ss_pred             cccCCC-CeeeeCCEE-----EEECCEEEEEECCCCCCHHHHHHHHhCCCCCC---ceeEEEEECCEEC
Confidence            445543 456666655     22456789999999999999999999886511   137888 577655

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.20  E-value=3e-06  Score=76.97  Aligned_cols=64  Identities=17%  Similarity=0.100  Sum_probs=43.1

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|++ ...+.++++     .-.+|++++|+||||||||||++.|++.+...--.+++|+| +.|.++.
T Consensus        18 l~~~~~~-~~~l~~vs~-----~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~   82 (259)
T PRK14274         18 MNLWYGQ-HHALKNINL-----SIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNIL   82 (259)
T ss_pred             EEEEECC-eeeEEeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcc
Confidence            4556654 345555554     22457789999999999999999999876410001257888 6776654

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=98.20  E-value=1.3e-06  Score=77.56  Aligned_cols=45  Identities=20%  Similarity=0.229  Sum_probs=35.5

Q ss_pred             hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556          20 QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY   74 (298)
Q Consensus        20 ~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy   74 (298)
                      ..+.++++     .-.+|++++|+||||||||||++.|++.+.     +++|+|+
T Consensus        22 ~il~~vs~-----~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~i~   66 (224)
T TIGR02324        22 PVLKNVSL-----TVNAGECVALSGPSGAGKSTLLKSLYANYL-----PDSGRIL   66 (224)
T ss_pred             EEEecceE-----EECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEE
Confidence            34555554     224577899999999999999999998876     7889984

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK13409 putative ATPase RIL; Provisional

Probab=98.20  E-value=7.3e-07  Score=90.46  Aligned_cols=53  Identities=13%  Similarity=0.046  Sum_probs=41.9

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV   73 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv   73 (298)
                      ..+..|++..+.+.++.      +.++|++++|+||||||||||++.|++.+.     +|+|+|
T Consensus        78 ~~~~~yg~~~~~L~~l~------~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~-----p~~G~i  130 (590)
T PRK13409         78 EPVHRYGVNGFKLYGLP------IPKEGKVTGILGPNGIGKTTAVKILSGELI-----PNLGDY  130 (590)
T ss_pred             CceEEecCCceeEecCC------cCCCCCEEEEECCCCCCHHHHHHHHhCCcc-----CCCccc
Confidence            35677865456555553      356788999999999999999999998776     788887

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=98.20  E-value=2.8e-06  Score=76.68  Aligned_cols=65  Identities=15%  Similarity=-0.002  Sum_probs=43.2

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      ..+..|++ ...+.|+++     .-.+|++++|+||||||||||++.|++......-.+++|+| +.|.++.
T Consensus         8 ~l~~~~~~-~~~l~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~   73 (250)
T PRK14240          8 DLDLFYGD-FQALKKINL-----DIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIY   73 (250)
T ss_pred             EEEEEECC-ceeeecceE-----EEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence            34556654 345555555     22457789999999999999999999865310001267888 5776654

>KOG0057|consensus

Probab=98.19  E-value=5.5e-06  Score=81.60  Aligned_cols=73  Identities=19%  Similarity=0.191  Sum_probs=50.4

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe-ccccCCCCCCCH--H
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY-CDMDIGTNKPSI--I   87 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy-~g~~i~t~kp~~--~   87 (298)
                      ++-+|+.++.++.+.++     .-++|+-++|+|+|||||||+++.|.+.+.      ++|.|+ .|.++.+..+..  .
T Consensus       357 V~f~y~~k~~iL~gvsf-----~I~kGekVaIvG~nGsGKSTilr~LlrF~d------~sG~I~IdG~dik~~~~~SlR~  425 (591)
T KOG0057|consen  357 VHFSYGPKRKVLKGVSF-----TIPKGEKVAIVGSNGSGKSTILRLLLRFFD------YSGSILIDGQDIKEVSLESLRQ  425 (591)
T ss_pred             eEEEeCCCCceecceeE-----EecCCCEEEEECCCCCCHHHHHHHHHHHhc------cCCcEEECCeeHhhhChHHhhh
Confidence            34456666666666655     235566799999999999999999988875      678885 788876543322  2


Q ss_pred             HHccccc
Q psy8556          88 EREITPH   94 (298)
Q Consensus        88 e~~~v~~   94 (298)
                      -+..+|+
T Consensus       426 ~Ig~VPQ  432 (591)
T KOG0057|consen  426 SIGVVPQ  432 (591)
T ss_pred             heeEeCC
Confidence            3344555

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.19  E-value=3e-06  Score=77.43  Aligned_cols=65  Identities=15%  Similarity=0.161  Sum_probs=43.1

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      .+..|++ ...++++++     .-.+|++++|+||||||||||++.|++.....--.+++|+| +.|.++..
T Consensus        27 l~~~~~~-~~il~~vsl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~   92 (268)
T PRK14248         27 LSIYYGE-KRAVNDISM-----DIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILD   92 (268)
T ss_pred             EEEEeCC-ceeeeceEE-----EEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccc
Confidence            3455653 345555554     22457789999999999999999999864210002578888 56766643

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=98.19  E-value=8.4e-07  Score=89.40  Aligned_cols=55  Identities=20%  Similarity=0.257  Sum_probs=41.7

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY   74 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy   74 (298)
                      ..+..|+++..++.++++     .-.+|++++|+||||||||||++.|++.+.     +++|.|+
T Consensus        11 ~l~~~y~~~~~il~~vs~-----~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~-----p~~G~i~   65 (556)
T PRK11819         11 RVSKVVPPKKQILKDISL-----SFFPGAKIGVLGLNGAGKSTLLRIMAGVDK-----EFEGEAR   65 (556)
T ss_pred             eEEEEeCCCCeeeeCceE-----EECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEE
Confidence            356778634567777766     223456899999999999999999998876     6777774

>PRK05439 pantothenate kinase; Provisional

Probab=98.19  E-value=3.7e-07  Score=85.40  Aligned_cols=38  Identities=24%  Similarity=0.281  Sum_probs=31.8

Q ss_pred             ccCCCeEEEEECCCchhHHHHHHHHHhhCC-------CeEeecCC
Q psy8556          33 LLFRKTKVAILGPTASGKSSVALKISEYIP-------CEIISIDS   70 (298)
Q Consensus        33 ~~~kg~iI~I~GpTGSGKSTLa~~La~~l~-------~~iis~Ds   70 (298)
                      ...++.+|+|.|++||||||++..|+..++       ..+|+.|+
T Consensus        82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~Dd  126 (311)
T PRK05439         82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDG  126 (311)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccc
Confidence            345678999999999999999999988653       45788887

>KOG0055|consensus

Probab=98.19  E-value=3.2e-06  Score=90.18  Aligned_cols=43  Identities=28%  Similarity=0.338  Sum_probs=37.4

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe-ccccCCCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY-CDMDIGTN   82 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy-~g~~i~t~   82 (298)
                      +.|+.++|+|||||||||+...|++.++     +++|+|+ +|.++.+-
T Consensus       377 ~~G~~valVG~SGsGKST~i~LL~Rfyd-----P~~G~V~idG~di~~~  420 (1228)
T KOG0055|consen  377 PSGQTVALVGPSGSGKSTLIQLLARFYD-----PTSGEVLIDGEDIRNL  420 (1228)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhcC-----CCCceEEEcCccchhc
Confidence            4566899999999999999999999998     9999995 78877653

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.18  E-value=4.3e-06  Score=75.47  Aligned_cols=64  Identities=17%  Similarity=0.092  Sum_probs=42.8

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|++ ..++.++++     .-.+|++++|+||||||||||++.|++.+....-..++|+| +.|.++.
T Consensus        10 l~~~~~~-~~~l~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~   74 (252)
T PRK14272         10 VNIYYGD-KQAVKNVNL-----DVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIY   74 (252)
T ss_pred             eEEEECC-EEeeccceE-----EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcc
Confidence            4556654 345555554     22457789999999999999999999886411000147888 5676654

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=98.18  E-value=4.2e-06  Score=73.94  Aligned_cols=34  Identities=32%  Similarity=0.454  Sum_probs=30.0

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISID   69 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~D   69 (298)
                      +.+.+|+|+|++||||||++..|.+ ++..++++|
T Consensus         3 ~~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D   36 (208)
T PRK14731          3 SLPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEAD   36 (208)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH-CCCeEEecc
Confidence            3456899999999999999999986 788898888

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.18  E-value=1.4e-06  Score=78.58  Aligned_cols=65  Identities=14%  Similarity=0.013  Sum_probs=44.2

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      ..+..|++ ...+.++++     .-.+|++++|+||||||||||++.|++.....--.+++|+| +.|.++.
T Consensus         8 ~l~~~~~~-~~~l~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~   73 (249)
T PRK14253          8 NLDLFYGE-NQALKSINL-----PIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIY   73 (249)
T ss_pred             ccEEEECC-eeeeecceE-----EecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcc
Confidence            34566653 445555555     22457789999999999999999999876511001368888 5676653

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=98.18  E-value=5.3e-06  Score=93.81  Aligned_cols=122  Identities=20%  Similarity=0.213  Sum_probs=71.6

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCH--HHHcccccccccccCcCccchHHHH
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSI--IEREITPHHLIDIIEPTKSYSVIQF  111 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~--~e~~~v~~~l~~~~~~~e~~s~~~f  111 (298)
                      .+|++++|+||||||||||++.|++.+.     +++|+| +.|.++.+. +..  ..+..++++..    ....+++.+.
T Consensus       954 ~~Gei~aLLG~NGAGKSTLLkiLaGLl~-----PtsG~I~i~G~dI~~~-~~~~r~~IG~~pQ~~~----L~~~LTV~E~ 1023 (2272)
T TIGR01257       954 YENQITAFLGHNGAGKTTTLSILTGLLP-----PTSGTVLVGGKDIETN-LDAVRQSLGMCPQHNI----LFHHLTVAEH 1023 (2272)
T ss_pred             cCCcEEEEECCCCChHHHHHHHHhcCCC-----CCceEEEECCEECcch-HHHHhhcEEEEecCCc----CCCCCCHHHH
Confidence            5678999999999999999999998876     899999 578777532 111  11223344311    1122233222


Q ss_pred             HHH-----------HHHhhHHHhh--------cCCceEEEchhH---HHHHHHHcc----CCCCCCC--CHHHHHHHHHH
Q psy8556         112 CED-----------ALFSIKNILK--------KKKLPLLVGGTM---LYFKALRDG----INKLPPA--NLKLRTKFNID  163 (298)
Q Consensus       112 ~~~-----------~~~~i~~i~~--------~~~~~IlvGGt~---~y~~~ll~~----~~~~p~~--d~~lr~~l~~~  163 (298)
                      ...           ..+.+.++.+        ...+--++||..   ....|++.+    +.|.|.+  |+.-++.+.+.
T Consensus      1024 L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~l 1103 (2272)
T TIGR01257      1024 ILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDL 1103 (2272)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHH
Confidence            211           1111222221        112334788877   466788865    4466754  78878777666


Q ss_pred             HHh
Q psy8556         164 INK  166 (298)
Q Consensus       164 ~~~  166 (298)
                      +.+
T Consensus      1104 L~~ 1106 (2272)
T TIGR01257      1104 LLK 1106 (2272)
T ss_pred             HHH
Confidence            544

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=98.18  E-value=4.2e-06  Score=86.44  Aligned_cols=42  Identities=21%  Similarity=0.309  Sum_probs=37.2

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      ++|+.++|+|+||||||||++.|++.+.     +++|+| +.|.++..
T Consensus       481 ~~G~~vaivG~sGsGKSTL~~ll~g~~~-----p~~G~I~idg~~i~~  523 (694)
T TIGR01846       481 KPGEFIGIVGPSGSGKSTLTKLLQRLYT-----PQHGQVLVDGVDLAI  523 (694)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEehhh
Confidence            6788999999999999999999999887     889999 68877753

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.18  E-value=2.5e-06  Score=77.07  Aligned_cols=65  Identities=12%  Similarity=-0.016  Sum_probs=42.8

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      ..+..|++ ..++.++++     .-.+|++++|+||||||||||++.|++..+..-..+++|+| +.|.++.
T Consensus        10 ~l~~~~~~-~~~l~~vs~-----~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~   75 (252)
T PRK14255         10 DVHLFYGK-FEALKGIDL-----DFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIY   75 (252)
T ss_pred             eEEEEECC-eeEEecceE-----EEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcc
Confidence            34566764 345555554     22467899999999999999999999864310000247888 5676654

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.17  E-value=7.2e-07  Score=80.63  Aligned_cols=66  Identities=14%  Similarity=0.105  Sum_probs=43.4

Q ss_pred             hhhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556           9 DRDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      ...+..|++ ...+.++++     .-.+|++++|+||||||||||++.|++........+++|+| +.|.++.
T Consensus         9 ~~l~~~~~~-~~~l~~is~-----~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~   75 (251)
T PRK14244          9 KNLNLWYGS-KQILFDINL-----DIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVY   75 (251)
T ss_pred             eeEEEEECC-eeeeeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehH
Confidence            344556652 345555555     22457789999999999999999999875310011467888 5666553

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=98.17  E-value=3.7e-06  Score=77.09  Aligned_cols=64  Identities=14%  Similarity=0.023  Sum_probs=42.9

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|++ ...+.++++     .-.+|++++|+||||||||||++.|++.+...-..+++|+| +.|.++.
T Consensus        31 l~~~~~~-~~il~~vs~-----~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~   95 (272)
T PRK14236         31 LNLFYGD-KQALFDISM-----RIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIY   95 (272)
T ss_pred             EEEEECC-eeEeeeEEE-----EEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECc
Confidence            3445543 344555444     22467899999999999999999999876411111478888 5776664

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=98.17  E-value=1.7e-06  Score=81.69  Aligned_cols=42  Identities=21%  Similarity=0.276  Sum_probs=36.1

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      .+|++++|+|+||||||||++.|++.+.     +++|+| +.|.++..
T Consensus        39 ~~Ge~~~IvG~sGsGKSTLl~~l~gl~~-----p~~G~i~~~g~~l~~   81 (327)
T PRK11308         39 ERGKTLAVVGESGCGKSTLARLLTMIET-----PTGGELYYQGQDLLK   81 (327)
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCcEEEECCEEcCc
Confidence            4577999999999999999999998876     688998 68877654

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=98.17  E-value=1e-06  Score=88.62  Aligned_cols=55  Identities=18%  Similarity=0.256  Sum_probs=41.4

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY   74 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy   74 (298)
                      ..+..|+.+..++.++++     .-.+|++++|+||||||||||++.|++.+.     +++|.|+
T Consensus         9 nls~~~~~~~~il~~is~-----~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~-----p~~G~i~   63 (552)
T TIGR03719         9 RVSKVVPPKKEILKDISL-----SFFPGAKIGVLGLNGAGKSTLLRIMAGVDK-----EFNGEAR   63 (552)
T ss_pred             eEEEecCCCCeeecCceE-----EECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEE
Confidence            356778633456677666     224466899999999999999999998775     6778774

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.16  E-value=1.2e-06  Score=80.66  Aligned_cols=66  Identities=15%  Similarity=-0.001  Sum_probs=44.3

Q ss_pred             hhhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556           9 DRDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      ...+..|++ ..++.++++     .-.+|++++|+||||||||||++.|++.+...-=.+++|.| +.|.++.
T Consensus        25 ~nl~~~~~~-~~il~~vs~-----~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~   91 (276)
T PRK14271         25 VNLTLGFAG-KTVLDQVSM-----GFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIF   91 (276)
T ss_pred             eeEEEEECC-EEEeeeeEE-----EEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEcc
Confidence            345666753 445555554     22467899999999999999999999876410000268888 5666654

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=98.16  E-value=3.9e-06  Score=76.76  Aligned_cols=63  Identities=17%  Similarity=0.223  Sum_probs=42.6

Q ss_pred             cccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          12 TETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      +..|++ ...+.|+++     .-.+|++++|+||||||||||++.|++.+....-.+++|+| +.|.++.
T Consensus        27 ~~~~~~-~~il~~vsl-----~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~   90 (267)
T PRK14237         27 HVYYGK-KEAIKGIDM-----QFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDIN   90 (267)
T ss_pred             EEEECC-eeeEeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcc
Confidence            445543 334555544     22467899999999999999999999876411112578888 5776664

>PRK00131 aroK shikimate kinase; Reviewed

Probab=98.16  E-value=3.5e-06  Score=71.03  Aligned_cols=35  Identities=17%  Similarity=0.420  Sum_probs=30.9

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      ++..|.|+|++||||||+++.||+.++..+++.|.
T Consensus         3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~   37 (175)
T PRK00131          3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDH   37 (175)
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChH
Confidence            46689999999999999999999999887876664

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.16  E-value=2e-06  Score=79.18  Aligned_cols=60  Identities=17%  Similarity=0.036  Sum_probs=45.0

Q ss_pred             hcccCchhh--hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQR--QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~--~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|+.++  ..+.++++     .-.+|++++|+||||||||||++.|++.++     +++|.| +.|.++.
T Consensus        10 l~~~~~~~~~~~~l~~v~l-----~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~i~   72 (277)
T PRK13642         10 LVFKYEKESDVNQLNGVSF-----SITKGEWVSIIGQNGSGKSTTARLIDGLFE-----EFEGKVKIDGELLT   72 (277)
T ss_pred             EEEEcCCCCcCeeeeeeEE-----EEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCCEEEECCEECC
Confidence            456676432  35555555     224577899999999999999999998876     889998 5777664

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=98.15  E-value=1.1e-05  Score=79.09  Aligned_cols=121  Identities=19%  Similarity=0.122  Sum_probs=69.7

Q ss_pred             hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHHHccccccccc
Q psy8556          20 QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIEREITPHHLID   98 (298)
Q Consensus        20 ~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e~~~v~~~l~~   98 (298)
                      -++.++++     .-.+|+.++|+||||||||||++.|.+...     +.+|.| .+|.++..  .+.+++...-.||.+
T Consensus       350 pil~~isF-----~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~-----p~~G~VRLDga~l~q--Wd~e~lG~hiGYLPQ  417 (580)
T COG4618         350 PILKGISF-----ALQAGEALGIIGPSGSGKSTLARLLVGIWP-----PTSGSVRLDGADLRQ--WDREQLGRHIGYLPQ  417 (580)
T ss_pred             cceeccee-----EecCCceEEEECCCCccHHHHHHHHHcccc-----cCCCcEEecchhhhc--CCHHHhccccCcCcc
Confidence            44445444     445677899999999999999999987766     777777 46666542  334444333223322


Q ss_pred             ccC------------cCccchHHHHHH-----HHHHhhHHHhhcCCceEEEchhHH---------HHHHHHcc----CCC
Q psy8556          99 IIE------------PTKSYSVIQFCE-----DALFSIKNILKKKKLPLLVGGTML---------YFKALRDG----INK  148 (298)
Q Consensus        99 ~~~------------~~e~~s~~~f~~-----~~~~~i~~i~~~~~~~IlvGGt~~---------y~~~ll~~----~~~  148 (298)
                      -++            +.++.+...-.+     .+++.|-......+++|-.||..+         ..+++..+    +.|
T Consensus       418 dVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLD  497 (580)
T COG4618         418 DVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLD  497 (580)
T ss_pred             cceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEec
Confidence            221            112222222222     234455555566677777777663         45666644    345


Q ss_pred             CCCC
Q psy8556         149 LPPA  152 (298)
Q Consensus       149 ~p~~  152 (298)
                      .|.+
T Consensus       498 EPNs  501 (580)
T COG4618         498 EPNS  501 (580)
T ss_pred             CCCC
Confidence            5644

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=98.15  E-value=1.8e-06  Score=78.48  Aligned_cols=53  Identities=21%  Similarity=0.285  Sum_probs=39.5

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY   74 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy   74 (298)
                      .+..|++ ..++.++++     .-.+|++++|+||||||||||++.|++.+.     +++|+|+
T Consensus        10 l~~~~~~-~~vl~~vs~-----~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~-----p~~G~i~   62 (251)
T PRK09544         10 VSVSFGQ-RRVLSDVSL-----ELKPGKILTLLGPNGAGKSTLVRVVLGLVA-----PDEGVIK   62 (251)
T ss_pred             eEEEECC-ceEEEeEEE-----EEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEE
Confidence            4556654 345555555     224577899999999999999999998876     7788874

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=98.15  E-value=3.8e-06  Score=76.03  Aligned_cols=40  Identities=18%  Similarity=0.446  Sum_probs=33.2

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+|++++|+||||||||||++.|++.++      ++|+| +.|.++.
T Consensus        20 ~~Gei~~l~G~nGsGKSTLl~~l~Gl~~------~~G~i~~~g~~i~   60 (248)
T PRK03695         20 RAGEILHLVGPNGAGKSTLLARMAGLLP------GSGSIQFAGQPLE   60 (248)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCCC------CCeEEEECCEecC
Confidence            5678999999999999999999998653      37888 5776664

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=98.15  E-value=9.8e-07  Score=90.37  Aligned_cols=54  Identities=19%  Similarity=0.159  Sum_probs=41.3

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY   74 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy   74 (298)
                      ..++.|++ ..++.++++     .-.+|++++|+||||||||||++.|++.+.     +|+|+|+
T Consensus         6 nls~~~g~-~~~l~~vs~-----~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~-----pd~G~I~   59 (638)
T PRK10636          6 SLQIRRGV-RVLLDNATA-----TINPGQKVGLVGKNGCGKSTLLALLKNEIS-----ADGGSYT   59 (638)
T ss_pred             EEEEEeCC-ceeecCcEE-----EECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEE
Confidence            35667754 456677666     123466899999999999999999998765     7888884

>KOG0058|consensus

Probab=98.15  E-value=1.9e-06  Score=87.28  Aligned_cols=61  Identities=20%  Similarity=0.258  Sum_probs=47.0

Q ss_pred             ccCchhh--hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCC
Q psy8556          13 ETDPQQR--QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNK   83 (298)
Q Consensus        13 ~~~~~~~--~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~k   83 (298)
                      =+||...  .+++|+++     +-++|++++|||||||||||++..|-+.+.     +.+|+| .+|.+|..-+
T Consensus       473 FaYP~Rp~~~Vlk~lsf-----ti~pGe~vALVGPSGsGKSTiasLL~rfY~-----PtsG~IllDG~~i~~~~  536 (716)
T KOG0058|consen  473 FAYPTRPDVPVLKNLSF-----TIRPGEVVALVGPSGSGKSTIASLLLRFYD-----PTSGRILLDGVPISDIN  536 (716)
T ss_pred             eecCCCCCchhhcCcee-----eeCCCCEEEEECCCCCCHHHHHHHHHHhcC-----CCCCeEEECCeehhhcC
Confidence            3565554  35566555     335567899999999999999999999998     999999 6888886533

>PRK06547 hypothetical protein; Provisional

Probab=98.15  E-value=2.5e-06  Score=73.31  Aligned_cols=40  Identities=23%  Similarity=0.312  Sum_probs=35.1

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEecc
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCD   76 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g   76 (298)
                      ..+.+|+|.|++||||||++..|++.++..+++.|+  +|.+
T Consensus        13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~--~~~~   52 (172)
T PRK06547         13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDD--LYPG   52 (172)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccc--eecc
Confidence            446789999999999999999999999989999887  6654

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=98.14  E-value=1.9e-06  Score=77.74  Aligned_cols=60  Identities=18%  Similarity=0.202  Sum_probs=41.8

Q ss_pred             cccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          12 TETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      +..|++ ...+.++++     .-++|++++|+||||||||||++.|++...   ..+++|.| +.|.++.
T Consensus        14 ~~~~~~-~~~l~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---~~~~~G~i~~~g~~~~   74 (252)
T CHL00131         14 HASVNE-NEILKGLNL-----SINKGEIHAIMGPNGSGKSTLSKVIAGHPA---YKILEGDILFKGESIL   74 (252)
T ss_pred             EEEeCC-EEeeeccee-----EEcCCcEEEEECCCCCCHHHHHHHHcCCCc---CcCCCceEEECCEEcc
Confidence            445653 345555554     224678999999999999999999998621   22678888 5666554

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=98.14  E-value=1.2e-06  Score=87.77  Aligned_cols=67  Identities=22%  Similarity=0.250  Sum_probs=47.1

Q ss_pred             hhcccCchh---hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          10 RDTETDPQQ---RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        10 ~~~~~~~~~---~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      ..+..|+++   ...+.++++     .-.+|++++|+||||||||||++.|++.++.....+++|.| +.|.++..
T Consensus        10 ~l~~~~~~~~~~~~~l~~isl-----~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~   80 (529)
T PRK15134         10 NLSVAFRQQQTVRTVVNDVSL-----QIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLH   80 (529)
T ss_pred             ceEEEecCCCCceeeeeceEE-----EEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEeccc
Confidence            456778642   356666666     12347789999999999999999999887621112378988 67777643

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=98.14  E-value=4.1e-06  Score=75.64  Aligned_cols=64  Identities=16%  Similarity=0.161  Sum_probs=42.3

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|++ ..++.++++     .-.+|++++|+||||||||||++.|++......-.+++|+| +.|.++.
T Consensus        11 l~~~~~~-~~~l~~~s~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~   75 (252)
T PRK14239         11 LSVYYNK-KKALNSVSL-----DFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIY   75 (252)
T ss_pred             eEEEECC-eeeeeeeeE-----EEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECc
Confidence            4556653 345566555     22457789999999999999999999863210001257888 5676654

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=98.14  E-value=2.2e-06  Score=71.84  Aligned_cols=41  Identities=29%  Similarity=0.351  Sum_probs=33.9

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+|++++|+||||||||||++.|++.++     +++|++ +.|.++.
T Consensus        23 ~~g~~~~i~G~nGsGKStll~~l~g~~~-----~~~G~i~~~~~~~~   64 (157)
T cd00267          23 KAGEIVALVGPNGSGKSTLLRAIAGLLK-----PTSGEILIDGKDIA   64 (157)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCccEEEECCEEcc
Confidence            4567899999999999999999998765     788988 4655543

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=98.14  E-value=1.7e-06  Score=85.92  Aligned_cols=61  Identities=13%  Similarity=0.064  Sum_probs=43.4

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .++.|++ ..+++++++     .-.+|++++|+||||||||||++.|++.++.   .+++|+| +.|.++.
T Consensus         7 l~~~~~~-~~il~~isl-----~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~---~~~~G~i~~~g~~~~   68 (500)
T TIGR02633         7 IVKTFGG-VKALDGIDL-----EVRPGECVGLCGENGAGKSTLMKILSGVYPH---GTWDGEIYWSGSPLK   68 (500)
T ss_pred             EEEEeCC-eEeecceEE-----EEeCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCCCeEEEECCEECC
Confidence            4556753 345666655     2245778999999999999999999987651   0268988 5776664

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.14  E-value=4.2e-06  Score=75.73  Aligned_cols=65  Identities=14%  Similarity=0.058  Sum_probs=43.0

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      .+..|++ ...+.|+++     .-.+|++++|+||||||||||++.|++..+..--.+++|.| +.|.++.+
T Consensus        12 l~~~~~~-~~~l~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~   77 (253)
T PRK14261         12 LNLWYGE-KHALYDITI-----SIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMD   77 (253)
T ss_pred             eEEEECC-eeeeeeeEE-----EECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccc
Confidence            3455653 345555554     22467899999999999999999999865411001247888 67766643

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.13  E-value=2.6e-06  Score=76.76  Aligned_cols=57  Identities=21%  Similarity=0.302  Sum_probs=41.5

Q ss_pred             cCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          14 TDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      +|+++...+++.++     .-++|+.++|+||||||||||++.|++.+.     +++|.| ..|.++.
T Consensus        12 ~y~~~~~~l~~v~~-----~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~-----p~~G~v~~~g~~~~   69 (235)
T COG1122          12 RYPGRKAALKDVSL-----EIEKGERVLLIGPNGSGKSTLLKLLNGLLK-----PTSGEVLVDGLDTS   69 (235)
T ss_pred             EcCCCceeeeeeEE-----EECCCCEEEEECCCCCCHHHHHHHHcCcCc-----CCCCEEEECCeecc
Confidence            45555344444444     225577899999999999999999988877     888888 4666654

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=98.13  E-value=2.7e-06  Score=84.47  Aligned_cols=41  Identities=12%  Similarity=0.115  Sum_probs=34.0

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeec-CCceE-eccccCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISI-DSALV-YCDMDIG   80 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~-Ds~qv-y~g~~i~   80 (298)
                      .+|++++|+||||||||||++.|++.+.     + ++|.| +.|.++.
T Consensus       284 ~~Ge~~~l~G~NGsGKSTLl~~l~G~~~-----p~~~G~i~~~g~~~~  326 (500)
T TIGR02633       284 RRGEILGVAGLVGAGRTELVQALFGAYP-----GKFEGNVFINGKPVD  326 (500)
T ss_pred             eCCcEEEEeCCCCCCHHHHHHHHhCCCC-----CCCCeEEEECCEECC
Confidence            4577899999999999999999998764     4 68888 5776664

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=98.13  E-value=2.2e-06  Score=77.94  Aligned_cols=59  Identities=24%  Similarity=0.281  Sum_probs=42.7

Q ss_pred             cccCchh-hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          12 TETDPQQ-RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        12 ~~~~~~~-~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      +..|+.. ...+.++++     .-++|++++|+|+||||||||++.|++.+.     +++|+| +.|.++.
T Consensus        26 ~~~~~~~~~~il~~isl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~i~g~~i~   86 (257)
T cd03288          26 CVRYENNLKPVLKHVKA-----YIKPGQKVGICGRTGSGKSSLSLAFFRMVD-----IFDGKIVIDGIDIS   86 (257)
T ss_pred             EEEeCCCCCcceeEEEE-----EEcCCCEEEEECCCCCCHHHHHHHHHcccC-----CCCCeEEECCEEhh
Confidence            4455542 244555544     224677899999999999999999998776     788988 5776654

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=98.13  E-value=2.1e-06  Score=78.59  Aligned_cols=47  Identities=17%  Similarity=0.182  Sum_probs=35.6

Q ss_pred             hhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE
Q psy8556          17 QQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV   73 (298)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv   73 (298)
                      .....+.++++     .-.+|++++|+||||||||||++.|++.++     +++|+|
T Consensus        35 ~~~~il~~is~-----~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~-----p~~G~I   81 (264)
T PRK13546         35 KTFFALDDISL-----KAYEGDVIGLVGINGSGKSTLSNIIGGSLS-----PTVGKV   81 (264)
T ss_pred             CceEEEeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCceEE
Confidence            33344444444     235677899999999999999999998876     777777

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=98.13  E-value=1e-06  Score=76.99  Aligned_cols=90  Identities=19%  Similarity=0.139  Sum_probs=56.6

Q ss_pred             cccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHHHc
Q psy8556          12 TETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIERE   90 (298)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e~~   90 (298)
                      .|+|. ++..+++.++     .-.+|+++++.||||+||||..-++.     .++.+|+|.| .++.+|+........+-
T Consensus        11 ~K~y~-kr~Vv~~Vsl-----~v~~GEiVGLLGPNGAGKTT~Fymi~-----Glv~~d~G~i~ld~~diT~lPm~~RArl   79 (243)
T COG1137          11 AKSYK-KRKVVNDVSL-----EVNSGEIVGLLGPNGAGKTTTFYMIV-----GLVRPDSGKILLDDEDITKLPMHKRARL   79 (243)
T ss_pred             hHhhC-CeeeeeeeeE-----EEcCCcEEEEECCCCCCceeEEEEEE-----EEEecCCceEEECCcccccCChHHHhhc
Confidence            34443 3444555554     11457799999999999999988884     4566999999 58888875444333333


Q ss_pred             ccccccccccCcCccchHHHHHH
Q psy8556          91 ITPHHLIDIIEPTKSYSVIQFCE  113 (298)
Q Consensus        91 ~v~~~l~~~~~~~e~~s~~~f~~  113 (298)
                      ++. +|.+..+....+|+.+...
T Consensus        80 Gig-YLpQE~SIFr~LtV~dNi~  101 (243)
T COG1137          80 GIG-YLPQEASIFRKLTVEDNIM  101 (243)
T ss_pred             Ccc-cccccchHhhcCcHHHHHH
Confidence            333 2333344445556555443

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.12  E-value=2.5e-06  Score=78.67  Aligned_cols=62  Identities=19%  Similarity=0.240  Sum_probs=44.5

Q ss_pred             hhcccCchh-hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC---ceE-eccccCCC
Q psy8556          10 RDTETDPQQ-RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDS---ALV-YCDMDIGT   81 (298)
Q Consensus        10 ~~~~~~~~~-~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds---~qv-y~g~~i~t   81 (298)
                      ..+..|++. ...+.++++     .-.+|++++|+||||||||||++.|++.+.     +++   |+| +.|.++..
T Consensus        10 ~l~~~~~~~~~~~l~~v~l-----~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~-----p~~g~~G~i~i~g~~~~~   76 (282)
T PRK13640         10 HVSFTYPDSKKPALNDISF-----SIPRGSWTALIGHNGSGKSTISKLINGLLL-----PDDNPNSKITVDGITLTA   76 (282)
T ss_pred             EEEEEcCCCCccceeeEEE-----EEcCCCEEEEECCCCCcHHHHHHHHhcccC-----CCCCCCcEEEECCEECCc
Confidence            345667643 345666655     223567899999999999999999998875     555   788 57776643

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=98.12  E-value=4e-06  Score=93.01  Aligned_cols=29  Identities=34%  Similarity=0.394  Sum_probs=26.2

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPC   63 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~   63 (298)
                      ++|+.++|+||||||||||++.|++.+..
T Consensus      1192 ~~G~~vAIVG~SGsGKSTl~~LL~r~ydp 1220 (1466)
T PTZ00265       1192 DSKKTTAIVGETGSGKSTVMSLLMRFYDL 1220 (1466)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHhCCC
Confidence            56778999999999999999999999873

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=98.12  E-value=5.1e-06  Score=76.17  Aligned_cols=63  Identities=16%  Similarity=0.176  Sum_probs=42.2

Q ss_pred             cccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          12 TETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      +..|++ ...+.++++     .-.+|++++|+|+||||||||++.|++.+....-.+++|.| +.|.++.
T Consensus        31 ~~~~~~-~~il~~vsl-----~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~   94 (271)
T PRK14238         31 NLWYGE-DHALKNINL-----DIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIF   94 (271)
T ss_pred             EEEECC-cceeeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcc
Confidence            445553 345555554     22457799999999999999999999876410001478888 5776664

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=98.12  E-value=2.1e-06  Score=76.99  Aligned_cols=38  Identities=24%  Similarity=0.344  Sum_probs=32.9

Q ss_pred             ccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEec
Q psy8556          33 LLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYC   75 (298)
Q Consensus        33 ~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~   75 (298)
                      .-.+|+.++|+|+||||||||++.|++.++     ||+|+|..
T Consensus        49 ~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~-----Pt~G~v~v   86 (249)
T COG1134          49 EIYKGERVGIIGHNGAGKSTLLKLIAGIYK-----PTSGKVKV   86 (249)
T ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhCccC-----CCCceEEE
Confidence            336678899999999999999999998776     99999853

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.11  E-value=6.7e-06  Score=74.26  Aligned_cols=64  Identities=13%  Similarity=0.009  Sum_probs=42.6

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|+. ..+++++++     .-.+|++++|+||||||||||++.|++.+...--.+++|+| +.|.++.
T Consensus        10 l~~~~~~-~~~l~~~sl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~   74 (251)
T PRK14251         10 VHLSYGN-YEALHGISL-----DFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIY   74 (251)
T ss_pred             eEEEECC-eeeeeeeeE-----EEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcc
Confidence            4555653 345555555     22457789999999999999999999876310000367888 5776654

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.10  E-value=5.8e-06  Score=74.73  Aligned_cols=59  Identities=19%  Similarity=0.172  Sum_probs=41.6

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecC-----CceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISID-----SALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~D-----s~qv-y~g~~i~   80 (298)
                      .+..|++ ...+.++++     .-.+|++++|+||||||||||++.|++.+.     ++     +|.| +.|.++.
T Consensus        10 l~~~~~~-~~il~~~s~-----~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~~~~~~G~v~~~g~~~~   74 (251)
T PRK14249         10 VNFFYHK-HQVLKNINM-----DFPERQITAIIGPSGCGKSTLLRALNRMND-----IVSGARLEGAVLLDNENIY   74 (251)
T ss_pred             EEEEECC-eeEecceEE-----EEcCCCEEEEECCCCCCHHHHHHHHhcccC-----ccccCCcccEEEECCEEcc
Confidence            4556653 335555554     224577899999999999999999998875     44     5777 5665553

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=98.10  E-value=1.5e-06  Score=89.03  Aligned_cols=54  Identities=13%  Similarity=0.168  Sum_probs=40.9

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY   74 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy   74 (298)
                      ..++.|+. ..++.++++     .-.+|++++|+||||||||||+++|++...     +|+|+|+
T Consensus         8 ~ls~~~~~-~~il~~is~-----~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~-----p~~G~I~   61 (635)
T PRK11147          8 GAWLSFSD-APLLDNAEL-----HIEDNERVCLVGRNGAGKSTLMKILNGEVL-----LDDGRII   61 (635)
T ss_pred             eEEEEeCC-ceeEeCcEE-----EECCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCeEEE
Confidence            34667754 456666665     223467899999999999999999998765     7888884

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=98.10  E-value=3.6e-06  Score=80.23  Aligned_cols=42  Identities=21%  Similarity=0.290  Sum_probs=36.9

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe-ccccCC
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY-CDMDIG   80 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy-~g~~i~   80 (298)
                      -++|+++.|+|.|||||||+++.|.+++.     +++|.|+ +|.++.
T Consensus       346 ikrGelvFliG~NGsGKST~~~LLtGL~~-----PqsG~I~ldg~pV~  388 (546)
T COG4615         346 IKRGELVFLIGGNGSGKSTLAMLLTGLYQ-----PQSGEILLDGKPVS  388 (546)
T ss_pred             EecCcEEEEECCCCCcHHHHHHHHhcccC-----CCCCceeECCccCC
Confidence            37789999999999999999999999888     9999996 666654

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.10  E-value=6.2e-06  Score=74.41  Aligned_cols=64  Identities=13%  Similarity=0.080  Sum_probs=42.6

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|++ ...+.|+++     .-.+|++++|+||||||||||++.|++..+..-..+++|+| +.|.++.
T Consensus         9 v~~~~~~-~~~l~~~s~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~   73 (250)
T PRK14266          9 LNTYFDD-AHILKNVNL-----DIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIY   73 (250)
T ss_pred             EEEEeCC-eEEEeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcc
Confidence            3455653 335555554     22457789999999999999999999875311111378888 5776654

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=98.09  E-value=2.9e-06  Score=77.26  Aligned_cols=59  Identities=25%  Similarity=0.263  Sum_probs=42.1

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecC---CceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISID---SALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~D---s~qv-y~g~~i~   80 (298)
                      .+..|++ ..++.++++     .-.+|++++|+||||||||||++.|++.+.     ++   +|+| +.|.++.
T Consensus        10 l~~~~~~-~~il~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----p~~~~~G~i~~~g~~~~   72 (262)
T PRK09984         10 LAKTFNQ-HQALHAVDL-----NIHHGEMVALLGPSGSGKSTLLRHLSGLIT-----GDKSAGSHIELLGRTVQ   72 (262)
T ss_pred             EEEEeCC-eEEEecceE-----EEcCCcEEEEECCCCCCHHHHHHHHhccCC-----CCCCCceEEEECCEecc
Confidence            3556653 345555555     224678999999999999999999998775     44   4788 5776654

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=98.09  E-value=1.7e-05  Score=78.75  Aligned_cols=135  Identities=19%  Similarity=0.163  Sum_probs=78.2

Q ss_pred             hhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHHHccc-------
Q psy8556          21 LTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIEREIT-------   92 (298)
Q Consensus        21 ~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e~~~v-------   92 (298)
                      .+.|+++     .-.+|++++|+|.|||||||++..|.+.++... ...+|.| |+|.++...  +..+++.+       
T Consensus        24 ~v~~vsf-----~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~-~~~~G~I~~~g~dl~~l--~~~~~r~~rg~~Ia~   95 (539)
T COG1123          24 AVRDVSF-----EVEPGEILGIVGESGSGKSTLALALMGLLPEGG-RITSGEVILDGRDLLGL--SEREMRKLRGKRIAM   95 (539)
T ss_pred             eeecceE-----EecCCcEEEEEcCCCCCHHHHHHHHhccCCCCC-cccceEEEECCcchhcC--CHHHHHHhccccEEE
Confidence            4445444     335678999999999999999999999987443 3457888 788877643  33333332       


Q ss_pred             -ccccccccCcCccchHHHHHH------------HHHHhhHHHhhc---------CCce-EEEchhH---HHHHHHHcc-
Q psy8556          93 -PHHLIDIIEPTKSYSVIQFCE------------DALFSIKNILKK---------KKLP-LLVGGTM---LYFKALRDG-  145 (298)
Q Consensus        93 -~~~l~~~~~~~e~~s~~~f~~------------~~~~~i~~i~~~---------~~~~-IlvGGt~---~y~~~ll~~-  145 (298)
                       ++.-...++  +.+++++-..            .+.+.+.+++..         .+.| -++||..   +...++... 
T Consensus        96 i~Q~p~~sln--P~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P  173 (539)
T COG1123          96 IFQDPMTSLN--PVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKP  173 (539)
T ss_pred             EecCchhhcC--chhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCC
Confidence             222222222  2233332222            122222222211         2234 6889977   667777755 


Q ss_pred             ---CCCCCCC--CHHHHHHHHHHHH
Q psy8556         146 ---INKLPPA--NLKLRTKFNIDIN  165 (298)
Q Consensus       146 ---~~~~p~~--d~~lr~~l~~~~~  165 (298)
                         +.|.|+.  |+..+..+.+.+.
T Consensus       174 ~LLIaDEPTTaLDvt~q~qIL~llk  198 (539)
T COG1123         174 KLLIADEPTTALDVTTQAQILDLLK  198 (539)
T ss_pred             CEEEECCCccccCHHHHHHHHHHHH
Confidence               4466754  7777777655544

>PLN03073 ABC transporter F family; Provisional

Probab=98.09  E-value=1.7e-06  Score=89.68  Aligned_cols=36  Identities=28%  Similarity=0.402  Sum_probs=31.2

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEec
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYC   75 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~   75 (298)
                      .+|++++|+||||||||||++.|++.+.     +++|.|+.
T Consensus       533 ~~Ge~i~LvG~NGsGKSTLLk~L~Gll~-----p~~G~I~~  568 (718)
T PLN03073        533 DLDSRIAMVGPNGIGKSTILKLISGELQ-----PSSGTVFR  568 (718)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCceEEE
Confidence            5677899999999999999999998776     77888853

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=98.08  E-value=1.7e-06  Score=86.64  Aligned_cols=53  Identities=13%  Similarity=0.085  Sum_probs=40.0

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY   74 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy   74 (298)
                      .+..|++ ..+++++++     .-.+|++++|+||||||||||++.|++.+.     +++|+|+
T Consensus         7 ls~~~~~-~~il~~vsl-----~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~-----p~~G~i~   59 (530)
T PRK15064          7 ITMQFGA-KPLFENISV-----KFGGGNRYGLIGANGCGKSTFMKILGGDLE-----PSAGNVS   59 (530)
T ss_pred             EEEEeCC-cEeEeCCEE-----EECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEE
Confidence            4566754 346666665     224567899999999999999999998876     6778773

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=98.08  E-value=6.8e-06  Score=75.05  Aligned_cols=64  Identities=11%  Similarity=-0.024  Sum_probs=41.7

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      ++..|++ ..++.++++     .-.+|++++|+||||||||||++.|++.++..--.+++|+| +.|.++.
T Consensus        16 v~~~~~~-~~il~~vsl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~   80 (264)
T PRK14243         16 LNVYYGS-FLAVKNVWL-----DIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLY   80 (264)
T ss_pred             eEEEECC-EEEeecceE-----EEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcc
Confidence            3455643 234444444     22467899999999999999999999875410000368888 5666653

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=98.08  E-value=1.9e-06  Score=87.38  Aligned_cols=41  Identities=24%  Similarity=0.333  Sum_probs=35.8

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      ++|+.++|+||||||||||++.|++.++     +++|.| +.|.++.
T Consensus       359 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~~~  400 (585)
T TIGR01192       359 KAGQTVAIVGPTGAGKTTLINLLQRVYD-----PTVGQILIDGIDIN  400 (585)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHccCCC-----CCCCEEEECCEEhh
Confidence            6788999999999999999999998887     889988 5776654

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>PRK07261 topology modulation protein; Provisional

Probab=98.07  E-value=4e-06  Score=71.83  Aligned_cols=32  Identities=41%  Similarity=0.734  Sum_probs=29.5

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          39 KVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      .|+|+|++|||||||++.|+..++.++++.|.
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~   33 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDT   33 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCC
Confidence            48999999999999999999999888888886

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.07  E-value=2.6e-06  Score=80.52  Aligned_cols=47  Identities=15%  Similarity=0.221  Sum_probs=35.8

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      ++|++++|+||||||||||++.|++.....--.+++|+| +.|.++..
T Consensus       106 ~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~  153 (329)
T PRK14257        106 KRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRS  153 (329)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence            567799999999999999999999876411001468888 68887753

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=98.06  E-value=3.1e-06  Score=78.06  Aligned_cols=59  Identities=15%  Similarity=0.153  Sum_probs=42.8

Q ss_pred             hcccCch-hhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQ-QRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~-~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..||. ....+.++++     .-++|++++|+||||||||||++.|++.+.      ++|+| +.|.++.
T Consensus         8 ls~~~~~~~~~~l~~isl-----~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~------~~G~I~i~g~~i~   68 (275)
T cd03289           8 LTAKYTEGGNAVLENISF-----SISPGQRVGLLGRTGSGKSTLLSAFLRLLN------TEGDIQIDGVSWN   68 (275)
T ss_pred             EEEEeCCCCCcceeceEE-----EEcCCCEEEEECCCCCCHHHHHHHHhhhcC------CCcEEEECCEEhh
Confidence            4566764 3356666665     224566899999999999999999998763      46888 4676664

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=98.05  E-value=3.2e-06  Score=70.38  Aligned_cols=129  Identities=14%  Similarity=0.169  Sum_probs=78.9

Q ss_pred             ECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccchHHHHHHHHHHhhHHH
Q psy8556          43 LGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQFCEDALFSIKNI  122 (298)
Q Consensus        43 ~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~~~f~~~~~~~i~~i  122 (298)
                      +|.+||||||++..||..++...|..|+.+--.+++        .--+++|      ++-++.   ..|++.....+...
T Consensus         1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~--------KM~~GiP------L~DdDR---~pWL~~l~~~~~~~   63 (161)
T COG3265           1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIE--------KMSAGIP------LNDDDR---WPWLEALGDAAASL   63 (161)
T ss_pred             CCCCccCHHHHHHHHHHHcCCceecccccCCHHHHH--------HHhCCCC------CCcchh---hHHHHHHHHHHHHh
Confidence            599999999999999999999888777621111110        1112222      111122   23666666666666


Q ss_pred             hhcCCceEEEchhHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhhCHHHHHHHHhcCCccccC--CCCChHHHHHHHHHH
Q psy8556         123 LKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTKFNIDINKYGISFLYDKLKLLDPVTAN--QPSNRHILHKRISDR  200 (298)
Q Consensus       123 ~~~~~~~IlvGGt~~y~~~ll~~~~~~p~~d~~lr~~l~~~~~~~g~~~l~~~L~~~Dp~~a~--~~~~r~~L~~ri~~R  200 (298)
                      ...++.+|++ +|.+                   ++.-++.+.            .-.|...-  +..+.+.+-+|+.+|
T Consensus        64 ~~~~~~~vi~-CSAL-------------------Kr~YRD~LR------------~~~~~~~Fv~L~g~~~~i~~Rm~~R  111 (161)
T COG3265          64 AQKNKHVVIA-CSAL-------------------KRSYRDLLR------------EANPGLRFVYLDGDFDLILERMKAR  111 (161)
T ss_pred             hcCCCceEEe-cHHH-------------------HHHHHHHHh------------ccCCCeEEEEecCCHHHHHHHHHhc
Confidence            6666754443 3322                   222222221            11222111  446899999999999


Q ss_pred             HHHHHhccchHHHHHHHHHhc
Q psy8556         201 FKKMLDQDLLINEVKKIRKKW  221 (298)
Q Consensus       201 v~~M~~~G~l~~Ev~~l~~~~  221 (298)
                      -.+.+... |++---..++..
T Consensus       112 ~gHFM~~~-ll~SQfa~LE~P  131 (161)
T COG3265         112 KGHFMPAS-LLDSQFATLEEP  131 (161)
T ss_pred             ccCCCCHH-HHHHHHHHhcCC
Confidence            99999999 999888888763

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=98.05  E-value=3.8e-06  Score=77.74  Aligned_cols=35  Identities=26%  Similarity=0.271  Sum_probs=30.9

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY   74 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy   74 (298)
                      .+|++++|+||||||||||++.|++.++     +++|+|+
T Consensus        61 ~~Ge~~~liG~NGsGKSTLl~~I~Gl~~-----p~~G~I~   95 (282)
T cd03291          61 EKGEMLAITGSTGSGKTSLLMLILGELE-----PSEGKIK   95 (282)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEE
Confidence            6788999999999999999999998876     7777774

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=98.04  E-value=4.7e-06  Score=72.09  Aligned_cols=44  Identities=27%  Similarity=0.286  Sum_probs=36.3

Q ss_pred             cccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-ecccc
Q psy8556          30 TGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMD   78 (298)
Q Consensus        30 ~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~   78 (298)
                      .+++..+++.++|+|.||||||||++.|++..+     +.+|.+ ++|..
T Consensus        32 vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~-----PTsG~il~n~~~   76 (267)
T COG4167          32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE-----PTSGEILINDHP   76 (267)
T ss_pred             eEEEecCCcEEEEEccCCCcHhHHHHHHhcccC-----CCCceEEECCcc
Confidence            456778899999999999999999999987665     888887 45543

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=98.04  E-value=5e-06  Score=81.93  Aligned_cols=72  Identities=15%  Similarity=0.070  Sum_probs=53.2

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHH
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIE   88 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e   88 (298)
                      ..+|+||+=.. +++.++     .-.+|++++++|.||+|||||++.|++.+.     +|+|+| +.|..+.-..|....
T Consensus        13 ~i~K~FggV~A-L~~v~l-----~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~-----p~~G~I~~~G~~~~~~sp~~A~   81 (500)
T COG1129          13 GISKSFGGVKA-LDGVSL-----TVRPGEVHALLGENGAGKSTLMKILSGVYP-----PDSGEILIDGKPVAFSSPRDAL   81 (500)
T ss_pred             cceEEcCCcee-ecccee-----EEeCceEEEEecCCCCCHHHHHHHHhCccc-----CCCceEEECCEEccCCCHHHHH
Confidence            45777876543 333333     335678999999999999999999998877     999999 688777666666555


Q ss_pred             Hccc
Q psy8556          89 REIT   92 (298)
Q Consensus        89 ~~~v   92 (298)
                      ..++
T Consensus        82 ~~GI   85 (500)
T COG1129          82 AAGI   85 (500)
T ss_pred             hCCc
Confidence            4444

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=98.04  E-value=3.5e-06  Score=83.53  Aligned_cols=40  Identities=23%  Similarity=0.184  Sum_probs=32.7

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeec-CCceE-eccccC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISI-DSALV-YCDMDI   79 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~-Ds~qv-y~g~~i   79 (298)
                      .+|++++|+||||||||||++.|++..+     + ++|+| +.|.++
T Consensus       284 ~~Ge~~~i~G~NGsGKSTLl~~l~G~~~-----~~~~G~i~~~g~~~  325 (490)
T PRK10938        284 NPGEHWQIVGPNGAGKSTLLSLITGDHP-----QGYSNDLTLFGRRR  325 (490)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCCC-----cccCCeEEEecccC
Confidence            5688999999999999999999998543     3 68888 566554

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=98.03  E-value=2.5e-06  Score=87.11  Aligned_cols=59  Identities=25%  Similarity=0.244  Sum_probs=42.8

Q ss_pred             hhhcccCchh---hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccc
Q psy8556           9 DRDTETDPQQ---RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDM   77 (298)
Q Consensus         9 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~   77 (298)
                      ...+.+|+.+   ...+.++++     .-.+|++++|+||||||||||++.|++.+.     +++|.| +.|.
T Consensus        16 ~~l~~~y~~~~~~~~~l~~is~-----~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~-----p~~G~i~~~g~   78 (623)
T PRK10261         16 ENLNIAFMQEQQKIAAVRNLSF-----SLQRGETLAIVGESGSGKSVTALALMRLLE-----QAGGLVQCDKM   78 (623)
T ss_pred             eceEEEecCCCCceeEEEeeEE-----EECCCCEEEEECCCCChHHHHHHHHHcCCC-----CCCeEEEECCE
Confidence            3456677532   245666665     123577899999999999999999999876     677777 4554

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=98.03  E-value=2.7e-06  Score=87.12  Aligned_cols=37  Identities=27%  Similarity=0.516  Sum_probs=31.8

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEecc
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCD   76 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g   76 (298)
                      .+|++++|+||||||||||++.|++.+.     +++|.|+.|
T Consensus       343 ~~Ge~~~l~G~NGsGKSTLlk~l~G~~~-----p~~G~i~~~  379 (635)
T PRK11147        343 QRGDKIALIGPNGCGKTTLLKLMLGQLQ-----ADSGRIHCG  379 (635)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCcEEEEC
Confidence            5677899999999999999999998765     788888544

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.02  E-value=8.5e-06  Score=72.09  Aligned_cols=59  Identities=15%  Similarity=0.231  Sum_probs=45.5

Q ss_pred             cccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe-ccccCC
Q psy8556          12 TETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY-CDMDIG   80 (298)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy-~g~~i~   80 (298)
                      .++.|.....+++++.     .-.++.++.|+|.||||||||++.|++.+.     +|+|+|. .|.+++
T Consensus        12 ~~g~~~ek~~l~~~sL-----~I~~g~FvtViGsNGAGKSTlln~iaG~l~-----~t~G~I~Idg~dVt   71 (263)
T COG1101          12 FKGTPLEKRALNGLSL-----EIAEGDFVTVIGSNGAGKSTLLNAIAGDLK-----PTSGQILIDGVDVT   71 (263)
T ss_pred             cCCChhHHHHHhcCce-----eecCCceEEEEcCCCccHHHHHHHhhCccc-----cCCceEEECceecc
Confidence            4455666666666666     113456899999999999999999998776     9999995 777775

>PRK08118 topology modulation protein; Reviewed

Probab=98.02  E-value=4.2e-06  Score=71.44  Aligned_cols=32  Identities=28%  Similarity=0.532  Sum_probs=29.5

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          39 KVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      .|.|+||+|||||||++.|+..++.++++.|.
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~   34 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA   34 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence            48999999999999999999999988888886

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=98.02  E-value=2.7e-06  Score=87.19  Aligned_cols=36  Identities=17%  Similarity=0.245  Sum_probs=31.4

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEec
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYC   75 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~   75 (298)
                      .+|++++|+||||||||||++.|++.+.     +++|.|+-
T Consensus       336 ~~Ge~~~l~G~NGsGKSTLlk~l~G~~~-----p~~G~i~~  371 (638)
T PRK10636        336 VPGSRIGLLGRNGAGKSTLIKLLAGELA-----PVSGEIGL  371 (638)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEEE
Confidence            5678999999999999999999998776     78888853

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=98.02  E-value=3.4e-06  Score=84.21  Aligned_cols=55  Identities=15%  Similarity=0.111  Sum_probs=39.2

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY   74 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy   74 (298)
                      .+..|++ ..++.++++     .-.+|++++|+||||||||||++.|++.+.   ..+++|+|+
T Consensus         6 l~~~~~~-~~~l~~is~-----~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~---~~p~~G~i~   60 (520)
T TIGR03269         6 LTKKFDG-KEVLKNISF-----TIEEGEVLGILGRSGAGKSVLMHVLRGMDQ---YEPTSGRII   60 (520)
T ss_pred             EEEEECC-eEeeeceeE-----EEcCCCEEEEECCCCCCHHHHHHHHhhccc---CCCCceEEE
Confidence            4566753 346666665     123467899999999999999999998751   126778874

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.02  E-value=9.8e-06  Score=74.98  Aligned_cols=64  Identities=17%  Similarity=0.109  Sum_probs=41.2

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|++ ..++.|+++     .-.+|++++|+||||||||||++.|++.....--.+++|+| +.|.++.
T Consensus        45 l~~~~~~-~~il~~vsl-----~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~  109 (286)
T PRK14275         45 FSIYYGE-FEAVKKVNA-----DILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIY  109 (286)
T ss_pred             eEEEECC-EEEEeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhh
Confidence            3445543 234555544     22457789999999999999999999863200000378888 5676654

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.01  E-value=3.4e-06  Score=76.78  Aligned_cols=47  Identities=21%  Similarity=0.272  Sum_probs=34.8

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      ..+++|+. ...+.++++     .-.+|++++|+||||||||||++.|++...
T Consensus        15 ~~~~~~~~-~~~l~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~   61 (257)
T PRK14246         15 RLYLYIND-KAILKDITI-----KIPNNSIFGIMGPSGSGKSTLLKVLNRLIE   61 (257)
T ss_pred             eEEEecCC-ceeEeceEE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            34566653 445566555     224577899999999999999999998865

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=98.00  E-value=4.1e-05  Score=78.69  Aligned_cols=62  Identities=19%  Similarity=0.180  Sum_probs=46.3

Q ss_pred             hcccCchh---hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCC
Q psy8556          11 DTETDPQQ---RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTN   82 (298)
Q Consensus        11 ~~~~~~~~---~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~   82 (298)
                      .+..|+++   ...+.+.++     .-.+|++++|+||||||||||++.|++.++     +++|++ |.|.++...
T Consensus        10 l~~~y~~~~~~~~il~~vs~-----~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~i~~~   75 (648)
T PRK10535         10 IRRSYPSGEEQVEVLKGISL-----DIYAGEMVAIVGASGSGKSTLMNILGCLDK-----PTSGTYRVAGQDVATL   75 (648)
T ss_pred             EEEEeCCCCCCeeeeeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEcCcC
Confidence            45667643   245555554     224577899999999999999999999876     889998 788777643

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=98.00  E-value=4.8e-06  Score=74.07  Aligned_cols=61  Identities=18%  Similarity=0.164  Sum_probs=41.5

Q ss_pred             cccCchh---hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccC
Q psy8556          12 TETDPQQ---RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDI   79 (298)
Q Consensus        12 ~~~~~~~---~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i   79 (298)
                      +-.||..   ..++.|+++     .-.+|++++|+||||||||||++.|++.+...  .+++|+| +.|.++
T Consensus        10 ~~~~~~~~~~~~~l~~vsl-----~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~--~~~~G~i~~~g~~~   74 (226)
T cd03234          10 GLKAKNWNKYARILNDVSL-----HVESGQVMAILGSSGSGKTTLLDAISGRVEGG--GTTSGQILFNGQPR   74 (226)
T ss_pred             eeeeecCccccccccCceE-----EEcCCeEEEEECCCCCCHHHHHHHHhCccCCC--CCCceEEEECCEEC
Confidence            4445543   355555554     22457789999999999999999999775310  0477888 566554

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=98.00  E-value=5.1e-06  Score=82.41  Aligned_cols=42  Identities=7%  Similarity=0.118  Sum_probs=36.0

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      .+|++++|+||||||||||++.|++...     +++|+| +.|.++..
T Consensus       272 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~  314 (491)
T PRK10982        272 HKGEILGIAGLVGAKRTDIVETLFGIRE-----KSAGTITLHGKKINN  314 (491)
T ss_pred             eCCcEEEEecCCCCCHHHHHHHHcCCCc-----CCccEEEECCEECCC
Confidence            6788999999999999999999998776     889999 56766643

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=98.00  E-value=6.4e-06  Score=81.77  Aligned_cols=41  Identities=24%  Similarity=0.387  Sum_probs=35.6

Q ss_pred             ccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-ecccc
Q psy8556          33 LLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMD   78 (298)
Q Consensus        33 ~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~   78 (298)
                      .-.+|++++|+|+||||||||++.|+++..     +++|.+ |.|.+
T Consensus       313 ~l~~GE~lglVGeSGsGKSTlar~i~gL~~-----P~~G~i~~~g~~  354 (539)
T COG1123         313 DLREGETLGLVGESGSGKSTLARILAGLLP-----PSSGSIIFDGQD  354 (539)
T ss_pred             EecCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEEeCcc
Confidence            336788999999999999999999998887     888888 67766

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.00  E-value=5.9e-06  Score=70.97  Aligned_cols=56  Identities=21%  Similarity=0.214  Sum_probs=42.1

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-ecc
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCD   76 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g   76 (298)
                      -.++.|+.+.-.    +.  .++..-+|++++|+|.||||||||+++|+..+.     +|+|+| |+.
T Consensus        11 ~lsk~Yg~~~gc----~~--vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~-----p~~G~v~Y~~   67 (258)
T COG4107          11 GLSKLYGPGKGC----RD--VSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT-----PDAGTVTYRM   67 (258)
T ss_pred             hhhhhhCCCcCc----cc--cceeecCCcEEEEEecCCCcHHhHHHHHhcccC-----CCCCeEEEEc
Confidence            356777555421    22  233446688999999999999999999998887     899998 754

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=98.00  E-value=3.2e-06  Score=84.64  Aligned_cols=35  Identities=23%  Similarity=0.295  Sum_probs=30.6

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY   74 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy   74 (298)
                      .+|++++|+||||||||||++.|++.+.     +++|.|+
T Consensus       343 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-----p~~G~i~  377 (530)
T PRK15064        343 EAGERLAIIGENGVGKTTLLRTLVGELE-----PDSGTVK  377 (530)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEE
Confidence            5678999999999999999999998765     7777774

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.99  E-value=6.2e-06  Score=75.25  Aligned_cols=64  Identities=13%  Similarity=0.060  Sum_probs=41.9

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccC
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDI   79 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i   79 (298)
                      ..+..|++ ...+.++++     .-.+|++++|+||||||||||++.|++.....--++++|+| +.|.++
T Consensus        21 ~l~~~~~~-~~vl~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~   85 (265)
T PRK14252         21 KLNFYYGG-YQALKNINM-----MVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNV   85 (265)
T ss_pred             EEEEEECC-eeeeeeeEE-----EEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccc
Confidence            34555653 245555544     22467799999999999999999999875411001378888 455443

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=97.98  E-value=5.2e-06  Score=82.84  Aligned_cols=41  Identities=12%  Similarity=0.211  Sum_probs=35.6

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+|++++|+||||||||||++.|++.++     +++|.| +.|.++.
T Consensus       287 ~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~i~  328 (510)
T PRK15439        287 RAGEILGLAGVVGAGRTELAETLYGLRP-----ARGGRIMLNGKEIN  328 (510)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCCcEEEECCEECC
Confidence            7789999999999999999999998776     788988 5676664

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=97.98  E-value=3.4e-06  Score=84.96  Aligned_cols=37  Identities=24%  Similarity=0.273  Sum_probs=31.6

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEecc
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCD   76 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g   76 (298)
                      .+|++++|+||||||||||++.|++.+.     +++|.|+-+
T Consensus       346 ~~Ge~~~l~G~NGsGKSTLl~~l~G~~~-----p~~G~i~~~  382 (552)
T TIGR03719       346 PPGGIVGVIGPNGAGKSTLFRMITGQEQ-----PDSGTIKIG  382 (552)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCeEEEEC
Confidence            5678999999999999999999998765     778888533

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>KOG0054|consensus

Probab=97.98  E-value=1.1e-05  Score=87.56  Aligned_cols=118  Identities=19%  Similarity=0.213  Sum_probs=73.5

Q ss_pred             chhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHH----Hc
Q psy8556          16 PQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIE----RE   90 (298)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e----~~   90 (298)
                      |+....+++++.     .=++++-|||+|.||||||||+.+|-+...     +.+|.| -+|.||.+  ....+    +.
T Consensus      1150 p~lp~VLk~is~-----~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e-----~~~G~I~IDgvdI~~--igL~dLRsrls 1217 (1381)
T KOG0054|consen 1150 PNLPLVLKGISF-----TIKPGEKVGIVGRTGAGKSSLILALFRLVE-----PAEGEILIDGVDISK--IGLHDLRSRLS 1217 (1381)
T ss_pred             CCCcchhcCceE-----EEcCCceEEEeCCCCCCHHHHHHHHHHhcC-----ccCCeEEEcCeeccc--ccHHHHHhcCe
Confidence            444455555555     114456799999999999999999988766     667777 47777764  22222    23


Q ss_pred             ccccc-------cccccCcCccchHHHHHHHH-----HHhhHHHhhcCCceEEEchhHH---------HHHHHHcc
Q psy8556          91 ITPHH-------LIDIIEPTKSYSVIQFCEDA-----LFSIKNILKKKKLPLLVGGTML---------YFKALRDG  145 (298)
Q Consensus        91 ~v~~~-------l~~~~~~~e~~s~~~f~~~~-----~~~i~~i~~~~~~~IlvGGt~~---------y~~~ll~~  145 (298)
                      -+|+.       +-..++|.+.|+-.+-.+..     .+.+......-+..|-.||.++         ..+|+++.
T Consensus      1218 IIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~ 1293 (1381)
T KOG0054|consen 1218 IIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRK 1293 (1381)
T ss_pred             eeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhcc
Confidence            34553       22236777777765544422     2334333334556788899885         34777765

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=97.97  E-value=3.6e-06  Score=84.84  Aligned_cols=37  Identities=27%  Similarity=0.282  Sum_probs=31.8

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEecc
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCD   76 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g   76 (298)
                      .+|++++|+||||||||||++.|++.+.     +++|.|+.+
T Consensus       348 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-----p~~G~i~~~  384 (556)
T PRK11819        348 PPGGIVGIIGPNGAGKSTLFKMITGQEQ-----PDSGTIKIG  384 (556)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEEC
Confidence            5678999999999999999999998765     788888543

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.96  E-value=5e-06  Score=68.02  Aligned_cols=32  Identities=31%  Similarity=0.544  Sum_probs=29.2

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          39 KVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      +|.++||+||||||+++.|++.++..+|+.|.
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~   32 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDE   32 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHH
Confidence            58999999999999999999999888888875

...

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=97.96  E-value=1.7e-05  Score=88.41  Aligned_cols=41  Identities=20%  Similarity=0.275  Sum_probs=34.6

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      ++|+.|+|+|+||||||||++.|++.+.      .+|.| ..|.++.+
T Consensus      1243 ~~GekvaIvGrSGsGKSTLl~lL~rl~~------~~G~I~IdG~di~~ 1284 (1490)
T TIGR01271      1243 EGGQRVGLLGRTGSGKSTLLSALLRLLS------TEGEIQIDGVSWNS 1284 (1490)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhhhcC------CCcEEEECCEEccc
Confidence            5678899999999999999999998763      47888 58888764

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=97.96  E-value=5.9e-05  Score=63.44  Aligned_cols=44  Identities=16%  Similarity=0.286  Sum_probs=32.0

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+|+++.|+||||||||||..-+++.+.+.. ++ +|.+ ..+.++.
T Consensus        26 a~GeivtlMGPSGcGKSTLls~~~G~La~~F-~~-~G~~~l~~~~l~   70 (213)
T COG4136          26 AKGEIVTLMGPSGCGKSTLLSWMIGALAGQF-SC-TGELWLNEQRLD   70 (213)
T ss_pred             cCCcEEEEECCCCccHHHHHHHHHhhcccCc-ce-eeEEEECCeecc
Confidence            5688999999999999999999999886333 12 3444 3444443

>PRK13948 shikimate kinase; Provisional

Probab=97.96  E-value=1.1e-05  Score=70.06  Aligned_cols=37  Identities=27%  Similarity=0.270  Sum_probs=32.8

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      .+++..|+|+|+.||||||+++.|++.++..+|..|.
T Consensus         7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~   43 (182)
T PRK13948          7 ERPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDR   43 (182)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCH
Confidence            3556789999999999999999999999999987774

>PLN02796 D-glycerate 3-kinase

Probab=97.95  E-value=8.4e-06  Score=77.12  Aligned_cols=64  Identities=16%  Similarity=0.138  Sum_probs=46.7

Q ss_pred             HHhhhcccC-chhhhhhccccccccc---cccCCCeEEEEECCCchhHHHHHHHHHhhCC-----CeEeecCC
Q psy8556           7 VLDRDTETD-PQQRQLTADFRRIRTG---KLLFRKTKVAILGPTASGKSSVALKISEYIP-----CEIISIDS   70 (298)
Q Consensus         7 ~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~-----~~iis~Ds   70 (298)
                      -.++..+.| |....++..++...+.   ....++-+|+|+||+|||||||++.|++.+.     ...|+.|+
T Consensus        66 ~~~~~~~~~~P~~~~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDd  138 (347)
T PLN02796         66 QKARVYHYYLPVYLWCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDD  138 (347)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECC
Confidence            345556666 8888888887774321   1224678999999999999999999999885     24566666

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=97.95  E-value=8e-06  Score=81.69  Aligned_cols=54  Identities=19%  Similarity=0.200  Sum_probs=39.3

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY   74 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy   74 (298)
                      ..+.+| ++..++.+.+.     .-.+|..|+|+|+||+|||||++.|++...     +|+|.|.
T Consensus         8 ~ls~~~-g~~~l~~~~~l-----~~~~G~riGLvG~NGaGKSTLLkilaG~~~-----~~~G~i~   61 (530)
T COG0488           8 NLSLAY-GDRPLLENVSL-----TLNPGERIGLVGRNGAGKSTLLKILAGELE-----PDSGEVT   61 (530)
T ss_pred             eeEEee-CCceeecCCcc-----eeCCCCEEEEECCCCCCHHHHHHHHcCCCc-----CCCCeEe
Confidence            345666 44455555444     224466799999999999999999998876     7777773

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=97.94  E-value=5.4e-05  Score=72.58  Aligned_cols=128  Identities=16%  Similarity=0.252  Sum_probs=74.8

Q ss_pred             ccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCC-----CCCHHHHcccccccccccCcC-
Q psy8556          31 GKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTN-----KPSIIEREITPHHLIDIIEPT-  103 (298)
Q Consensus        31 ~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~-----kp~~~e~~~v~~~l~~~~~~~-  103 (298)
                      +...++|+.++|+|.||||||||..+|.++++     .+ |+| |.|.++...     .|-..+++.+.+.-++.++|. 
T Consensus       307 sl~L~~gqTlGlVGESGSGKsTlG~allrL~~-----s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRm  380 (534)
T COG4172         307 SLTLRRGQTLGLVGESGSGKSTLGLALLRLIP-----SQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRM  380 (534)
T ss_pred             eeEecCCCeEEEEecCCCCcchHHHHHHhhcC-----cC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCccc
Confidence            34457889999999999999999999988876     44 777 788887643     233345555555444434331 


Q ss_pred             --------------ccchHHHHHHHHHHhhHHH----hhcCCce-EEEchhH---HHHHHHHcc----CCCCCCC--CHH
Q psy8556         104 --------------KSYSVIQFCEDALFSIKNI----LKKKKLP-LLVGGTM---LYFKALRDG----INKLPPA--NLK  155 (298)
Q Consensus       104 --------------e~~s~~~f~~~~~~~i~~i----~~~~~~~-IlvGGt~---~y~~~ll~~----~~~~p~~--d~~  155 (298)
                                    ...+..+-...+.+.+.+.    ..+++.| =++||--   ...++++-.    +.|.|.+  |-.
T Consensus       381 tV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~S  460 (534)
T COG4172         381 TVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRS  460 (534)
T ss_pred             CHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHH
Confidence                          1223333333333333322    1234445 4788866   455777643    3456654  555


Q ss_pred             HHHHHHHHH
Q psy8556         156 LRTKFNIDI  164 (298)
Q Consensus       156 lr~~l~~~~  164 (298)
                      ++..+-+.+
T Consensus       461 VQaQvv~LL  469 (534)
T COG4172         461 VQAQVLDLL  469 (534)
T ss_pred             HHHHHHHHH
Confidence            555554443

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=97.94  E-value=7.4e-06  Score=68.98  Aligned_cols=31  Identities=26%  Similarity=0.449  Sum_probs=28.0

Q ss_pred             EEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          40 VAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      |+|+||+||||||+++.|++.++..+++.|+
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~   31 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDD   31 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcCCeEEeCcc
Confidence            4799999999999999999999888887776

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=97.94  E-value=5e-06  Score=85.53  Aligned_cols=53  Identities=21%  Similarity=0.251  Sum_probs=38.3

Q ss_pred             cccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556          12 TETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY   74 (298)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy   74 (298)
                      +..||++..++.++++     .-++|++++|+||||||||||++.|++.++     +++|+++
T Consensus       458 ~~~~~~~~~il~~isl-----~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~-----~~~G~i~  510 (659)
T TIGR00954       458 PLVTPNGDVLIESLSF-----EVPSGNHLLICGPNGCGKSSLFRILGELWP-----VYGGRLT  510 (659)
T ss_pred             EEECCCCCeeeecceE-----EECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEe
Confidence            4455544445555544     225677899999999999999999999876     5666664

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=97.93  E-value=7.3e-06  Score=82.80  Aligned_cols=41  Identities=24%  Similarity=0.371  Sum_probs=35.9

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      ++|+.++|+||||||||||++.|++.++     +++|+| +.|.++.
T Consensus       339 ~~G~~~~ivG~sGsGKSTLl~ll~g~~~-----p~~G~i~~~g~~~~  380 (569)
T PRK10789        339 KPGQMLGICGPTGSGKSTLLSLIQRHFD-----VSEGDIRFHDIPLT  380 (569)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCCEEEECCEEHh
Confidence            6788999999999999999999998887     889998 5776664

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=97.93  E-value=1.1e-05  Score=69.60  Aligned_cols=31  Identities=26%  Similarity=0.418  Sum_probs=27.2

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCCCeEe
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIPCEII   66 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~ii   66 (298)
                      .|++++|+|||||||||+++.|++.++...+
T Consensus         2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~~~i   32 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIGSKIAALFSAKFI   32 (176)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcCCEEE
Confidence            4789999999999999999999999875444

>PRK06217 hypothetical protein; Validated

Probab=97.93  E-value=9.8e-06  Score=69.90  Aligned_cols=32  Identities=19%  Similarity=0.429  Sum_probs=29.9

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          39 KVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      .|+|+|++||||||+++.|++.++.++++.|.
T Consensus         3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~   34 (183)
T PRK06217          3 RIHITGASGSGTTTLGAALAERLDIPHLDTDD   34 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCcEEEcCc
Confidence            48999999999999999999999988888887

>PRK13949 shikimate kinase; Provisional

Probab=97.93  E-value=8.8e-06  Score=69.62  Aligned_cols=32  Identities=16%  Similarity=0.386  Sum_probs=28.9

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          39 KVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      -|+|+|++||||||+++.||+.++...++.|.
T Consensus         3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D~   34 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARELGLSFIDLDF   34 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCCeecccH
Confidence            48999999999999999999999988887774

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=97.90  E-value=1.4e-05  Score=67.93  Aligned_cols=28  Identities=29%  Similarity=0.437  Sum_probs=23.7

Q ss_pred             ECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          43 LGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        43 ~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      +|||||||||+++.|++.++...++.|.
T Consensus         1 ~G~sGsGKSTla~~la~~l~~~~~~~d~   28 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQLHAAFLDGDF   28 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHhCCeEEeCcc
Confidence            5999999999999999999866665553

>PRK14527 adenylate kinase; Provisional

Probab=97.89  E-value=1.1e-05  Score=70.02  Aligned_cols=37  Identities=22%  Similarity=0.369  Sum_probs=31.5

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      .+++++|+|+||+||||||+++.|+..++...++.+.
T Consensus         3 ~~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd   39 (191)
T PRK14527          3 QTKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGD   39 (191)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccH
Confidence            4578999999999999999999999998876665543

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=97.89  E-value=4.2e-05  Score=65.52  Aligned_cols=80  Identities=18%  Similarity=0.247  Sum_probs=49.1

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccchHHHHHHHHHHh
Q psy8556          39 KVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQFCEDALFS  118 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~~~f~~~~~~~  118 (298)
                      -|+++|+-||||||+.+.||+.++..++..|.  .               ++....  .++....+.+--..|.+.-.+.
T Consensus         4 ~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~--~---------------Ie~~~g--~sI~eIF~~~GE~~FR~~E~~v   64 (172)
T COG0703           4 NIVLIGFMGAGKSTIGRALAKALNLPFIDTDQ--E---------------IEKRTG--MSIAEIFEEEGEEGFRRLETEV   64 (172)
T ss_pred             cEEEEcCCCCCHhHHHHHHHHHcCCCcccchH--H---------------HHHHHC--cCHHHHHHHHhHHHHHHHHHHH
Confidence            48999999999999999999999977765553  1               000000  0111111122223455555667


Q ss_pred             hHHHhhcCCceEEEchhHH
Q psy8556         119 IKNILKKKKLPLLVGGTML  137 (298)
Q Consensus       119 i~~i~~~~~~~IlvGGt~~  137 (298)
                      +.++...+..+|-.||-.+
T Consensus        65 l~~l~~~~~~ViaTGGG~v   83 (172)
T COG0703          65 LKELLEEDNAVIATGGGAV   83 (172)
T ss_pred             HHHHhhcCCeEEECCCccc
Confidence            7777777766666666554

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=97.88  E-value=3e-05  Score=77.49  Aligned_cols=105  Identities=17%  Similarity=0.057  Sum_probs=71.2

Q ss_pred             ccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccchHHHHH
Q psy8556          33 LLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQFC  112 (298)
Q Consensus        33 ~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~~~f~  112 (298)
                      .+.++++|+++|++||||||+++.++...+..+||.|..        +                             .+ 
T Consensus       365 ~~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~l--------g-----------------------------~~-  406 (526)
T TIGR01663       365 DDAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTL--------G-----------------------------ST-  406 (526)
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHH--------H-----------------------------HH-
Confidence            345689999999999999999999998888788877741        0                             01 


Q ss_pred             HHHHHhhHHHhhcCCceEEEchhHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhhCHHHHHHHHhcCCccccCCCCChHH
Q psy8556         113 EDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTKFNIDINKYGISFLYDKLKLLDPVTANQPSNRHI  192 (298)
Q Consensus       113 ~~~~~~i~~i~~~~~~~IlvGGt~~y~~~ll~~~~~~p~~d~~lr~~l~~~~~~~g~~~l~~~L~~~Dp~~a~~~~~r~~  192 (298)
                      ..+...+.+.+..|+.+|+                |-.-.+.+.|+++.+.+.+.|.....-+          +..|.++
T Consensus       407 ~~~~~~a~~~L~~G~sVVI----------------DaTn~~~~~R~~~i~lAk~~gv~v~~i~----------~~~p~e~  460 (526)
T TIGR01663       407 QNCLTACERALDQGKRCAI----------------DNTNPDAASRAKFLQCARAAGIPCRCFL----------FNAPLAQ  460 (526)
T ss_pred             HHHHHHHHHHHhCCCcEEE----------------ECCCCCHHHHHHHHHHHHHcCCeEEEEE----------eCCCHHH
Confidence            1223345566677776555                2333457778888777776664311001          3357899


Q ss_pred             HHHHHHHHH
Q psy8556         193 LHKRISDRF  201 (298)
Q Consensus       193 L~~ri~~Rv  201 (298)
                      +.+|+..|-
T Consensus       461 ~~~Rn~~R~  469 (526)
T TIGR01663       461 AKHNIAFRE  469 (526)
T ss_pred             HHHHHHhhc
Confidence            999999885

Note that the EC number for the kinase function is: 2.7.1.78

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=97.88  E-value=1.2e-05  Score=80.03  Aligned_cols=40  Identities=28%  Similarity=0.478  Sum_probs=34.2

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccc
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDM   77 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~   77 (298)
                      ++.+|+|.||+||||||+++.|++.++..+  .|+|.+|+..
T Consensus       283 ~~~ii~i~G~sgsGKst~a~~la~~l~~~~--~d~g~~YR~~  322 (512)
T PRK13477        283 RQPIIAIDGPAGAGKSTVTRAVAKKLGLLY--LDTGAMYRAV  322 (512)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCCeE--ecCCceehHH
Confidence            678999999999999999999999998555  4666689864

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=97.87  E-value=1.2e-05  Score=80.20  Aligned_cols=38  Identities=24%  Similarity=0.182  Sum_probs=32.4

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccc
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDM   77 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~   77 (298)
                      .+|++++|+||||||||||++.|++.+.     +++|+| +.|.
T Consensus        48 ~~GEivgIiGpNGSGKSTLLkiLaGLl~-----P~sGeI~I~G~   86 (549)
T PRK13545         48 PEGEIVGIIGLNGSGKSTLSNLIAGVTM-----PNKGTVDIKGS   86 (549)
T ss_pred             eCCCEEEEEcCCCCCHHHHHHHHhCCCC-----CCceEEEECCE
Confidence            5678999999999999999999998876     788888 4443

>PRK06696 uridine kinase; Validated

Probab=97.87  E-value=1.6e-05  Score=70.89  Aligned_cols=40  Identities=43%  Similarity=0.434  Sum_probs=31.7

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHhhCC---CeE--eecCCceEec
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISEYIP---CEI--ISIDSALVYC   75 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~---~~i--is~Ds~qvy~   75 (298)
                      +..+.+|+|.|++|||||||+..|+..++   ..+  ++.|+  +|.
T Consensus        19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Dd--f~~   63 (223)
T PRK06696         19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDD--FHN   63 (223)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccc--ccC
Confidence            44678999999999999999999999883   333  45776  553

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=97.86  E-value=1.2e-05  Score=65.92  Aligned_cols=31  Identities=32%  Similarity=0.434  Sum_probs=28.2

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556          39 KVAILGPTASGKSSVALKISEYIPCEIISID   69 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~D   69 (298)
                      +|+|+|++||||||+++.|+..++.++++.|
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~   31 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTG   31 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence            5899999999999999999999988887776

>KOG0055|consensus

Probab=97.86  E-value=3.2e-05  Score=82.78  Aligned_cols=106  Identities=20%  Similarity=0.182  Sum_probs=64.1

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe-ccccCCCCCCC--HHHHcccccc--cccc------cCcC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY-CDMDIGTNKPS--IIEREITPHH--LIDI------IEPT  103 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy-~g~~i~t~kp~--~~e~~~v~~~--l~~~------~~~~  103 (298)
                      ++|+.++|||||||||||+...|-+.++     +++|.|+ .|.++.+-++.  ...+..|.+.  |++.      .-..
T Consensus      1014 ~~GqTvALVG~SGsGKSTvI~LLeRfYd-----p~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~ 1088 (1228)
T KOG0055|consen 1014 RAGQTVALVGPSGSGKSTVISLLERFYD-----PDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGS 1088 (1228)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHhcC-----CCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccC
Confidence            5677899999999999999999999998     8899885 67777754432  1233333332  1110      0011


Q ss_pred             ccchHHHHHH-----HHHHhhHHHhhcCCceEE------EchhH---HHHHHHHcc
Q psy8556         104 KSYSVIQFCE-----DALFSIKNILKKKKLPLL------VGGTM---LYFKALRDG  145 (298)
Q Consensus       104 e~~s~~~f~~-----~~~~~i~~i~~~~~~~Il------vGGt~---~y~~~ll~~  145 (298)
                      +..+..+-.+     .++..|..+.+.-++++-      +||-.   -..+|++++
T Consensus      1089 ~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRn 1144 (1228)
T KOG0055|consen 1089 EEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRN 1144 (1228)
T ss_pred             CCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcC
Confidence            1122222222     234556666665555553      45544   367999976

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.86  E-value=1.2e-05  Score=68.86  Aligned_cols=33  Identities=27%  Similarity=0.247  Sum_probs=28.3

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIPCEIISID   69 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~D   69 (298)
                      .++|+|+||+||||||+++.|++.++...++.+
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g   35 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTG   35 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHH
Confidence            468999999999999999999998876665543

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK07667 uridine kinase; Provisional

Probab=97.85  E-value=6.1e-06  Score=71.95  Aligned_cols=36  Identities=25%  Similarity=0.350  Sum_probs=29.9

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCC-----CeEeecCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIP-----CEIISIDS   70 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~-----~~iis~Ds   70 (298)
                      ....+|+|.|++||||||++..|+..++     ..+++.|+
T Consensus        15 ~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd   55 (193)
T PRK07667         15 ENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDD   55 (193)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence            3447999999999999999999998763     45788886

>PRK13946 shikimate kinase; Provisional

Probab=97.85  E-value=1.3e-05  Score=69.22  Aligned_cols=34  Identities=24%  Similarity=0.461  Sum_probs=30.3

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      +..|+++|++||||||+++.||+.++.+++..|.
T Consensus        10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~   43 (184)
T PRK13946         10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT   43 (184)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence            4579999999999999999999999988887774

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=97.83  E-value=1.9e-05  Score=70.99  Aligned_cols=55  Identities=22%  Similarity=0.386  Sum_probs=39.5

Q ss_pred             chhhhhhccccc-cccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          16 PQQRQLTADFRR-IRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        16 ~~~~~~~~~~~~-~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      ++++.+++|++- +..|.      -.+|+||||||||||++.+++..+     +.++.+ ..|...++
T Consensus        41 r~gk~iL~~isW~V~~ge------~W~I~G~NGsGKTTLL~ll~~~~~-----pssg~~~~~G~~~G~   97 (257)
T COG1119          41 RNGKKILGDLSWQVNPGE------HWAIVGPNGAGKTTLLSLLTGEHP-----PSSGDVTLLGRRFGK   97 (257)
T ss_pred             ECCEeeccccceeecCCC------cEEEECCCCCCHHHHHHHHhcccC-----CCCCceeeeeeeccC
Confidence            455666666666 55554      499999999999999999998876     445555 34555553

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.83  E-value=1.9e-05  Score=69.08  Aligned_cols=59  Identities=17%  Similarity=0.226  Sum_probs=40.5

Q ss_pred             cccCchh-hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          12 TETDPQQ-RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        12 ~~~~~~~-~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      +-+|++. +..+.+++.   +-  .+|++++++||||||||||++.+|+...     ++.|.| ..|..|.
T Consensus        10 sl~y~g~~~~~le~vsL---~i--a~ge~vv~lGpSGcGKTTLLnl~AGf~~-----P~~G~i~l~~r~i~   70 (259)
T COG4525          10 SLSYEGKPRSALEDVSL---TI--ASGELVVVLGPSGCGKTTLLNLIAGFVT-----PSRGSIQLNGRRIE   70 (259)
T ss_pred             EEecCCcchhhhhccce---ee--cCCCEEEEEcCCCccHHHHHHHHhcCcC-----cccceEEECCEecc
Confidence            3455443 344455444   21  3467899999999999999999998766     777777 4555554

>KOG3308|consensus

Probab=97.83  E-value=3.6e-05  Score=67.23  Aligned_cols=40  Identities=33%  Similarity=0.604  Sum_probs=34.5

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCC-CeEeecCCceEecc
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIP-CEIISIDSALVYCD   76 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~-~~iis~Ds~qvy~g   76 (298)
                      +|--+|+|.|.|.||||||++.|...++ +.+|+-|.  +|+.
T Consensus         2 ~K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDD--FyKp   42 (225)
T KOG3308|consen    2 MKTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDD--FYKP   42 (225)
T ss_pred             ceEEEEEeecccCCCHhHHHHHHHHHccCCeeecccc--ccCc
Confidence            3457899999999999999999999996 67999997  7753

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=97.81  E-value=1.8e-05  Score=65.65  Aligned_cols=32  Identities=28%  Similarity=0.459  Sum_probs=28.5

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          39 KVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      +++|+|++||||||+++.|+..++..+++.|.
T Consensus         1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~   32 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDD   32 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcc
Confidence            47899999999999999999998877777765

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>TIGR00017 cmk cytidylate kinase

Probab=97.80  E-value=1.5e-05  Score=70.96  Aligned_cols=38  Identities=34%  Similarity=0.536  Sum_probs=32.0

Q ss_pred             eEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccc
Q psy8556          38 TKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDM   77 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~   77 (298)
                      .+|+|.||+||||||+++.|++.++..++  |+|.+|+..
T Consensus         3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~--~~g~~~r~~   40 (217)
T TIGR00017         3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYL--DSGAMYRAI   40 (217)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcee--eCchHHHHH
Confidence            47999999999999999999999987665  566677654

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=97.79  E-value=1.4e-05  Score=70.51  Aligned_cols=38  Identities=34%  Similarity=0.507  Sum_probs=33.3

Q ss_pred             eEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccc
Q psy8556          38 TKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDM   77 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~   77 (298)
                      .+|+|-||+||||||+++.||..++...  .|+|-+|+-.
T Consensus         5 ~~IAIDGPagsGKsTvak~lA~~Lg~~y--ldTGamYRa~   42 (222)
T COG0283           5 IIIAIDGPAGSGKSTVAKILAEKLGFHY--LDTGAMYRAV   42 (222)
T ss_pred             eEEEEeCCCccChHHHHHHHHHHhCCCe--ecccHHHHHH
Confidence            6899999999999999999999998666  5888888654

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=97.79  E-value=0.00011  Score=71.36  Aligned_cols=54  Identities=20%  Similarity=0.327  Sum_probs=42.3

Q ss_pred             cCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCce
Q psy8556          14 TDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSAL   72 (298)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~q   72 (298)
                      .||+-.-..+++++...+..-..+++|+++||||.||||+++.||+.+.     +|+|.
T Consensus       344 ~y~~~~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik-----Pdeg~  397 (591)
T COG1245         344 EYPDLKKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK-----PDEGS  397 (591)
T ss_pred             ecchheeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhcccc-----CCCCC
Confidence            3566555566777755555557899999999999999999999998776     77764

>PRK13409 putative ATPase RIL; Provisional

Probab=97.79  E-value=1.8e-05  Score=80.39  Aligned_cols=36  Identities=22%  Similarity=0.355  Sum_probs=31.9

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEec
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYC   75 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~   75 (298)
                      .+|++++|+||||||||||++.|++.+.     +++|.|+.
T Consensus       363 ~~Geiv~l~G~NGsGKSTLlk~L~Gl~~-----p~~G~I~~  398 (590)
T PRK13409        363 YEGEVIGIVGPNGIGKTTFAKLLAGVLK-----PDEGEVDP  398 (590)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEE
Confidence            6789999999999999999999998876     78888753

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=97.79  E-value=1.8e-05  Score=70.71  Aligned_cols=29  Identities=34%  Similarity=0.492  Sum_probs=26.5

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      +.++.+++|+||||||||||++.|++.++
T Consensus        30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~   58 (229)
T PRK09270         30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQ   58 (229)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            45689999999999999999999999885

>PRK14530 adenylate kinase; Provisional

Probab=97.78  E-value=2.5e-05  Score=69.08  Aligned_cols=34  Identities=18%  Similarity=0.411  Sum_probs=29.1

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      +..|+|+||+||||||+++.||+.++...|+.+.
T Consensus         3 ~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~   36 (215)
T PRK14530          3 QPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGD   36 (215)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccH
Confidence            4469999999999999999999999977775543

>PRK06762 hypothetical protein; Provisional

Probab=97.78  E-value=1.9e-05  Score=66.66  Aligned_cols=33  Identities=30%  Similarity=0.464  Sum_probs=27.1

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCC--CeEeecC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIP--CEIISID   69 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~--~~iis~D   69 (298)
                      +.+|+|+|++||||||+++.|++.++  ..+++.|
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D   36 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQD   36 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHH
Confidence            57899999999999999999999884  3344444

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.77  E-value=1.9e-05  Score=67.49  Aligned_cols=26  Identities=15%  Similarity=0.339  Sum_probs=23.6

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      +++++|+||||||||||++.|+..++
T Consensus         1 ~~~~~i~G~sGsGKttl~~~l~~~~~   26 (179)
T TIGR02322         1 GRLIYVVGPSGAGKDTLLDYARARLA   26 (179)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            45899999999999999999999875

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=97.77  E-value=1.4e-05  Score=69.84  Aligned_cols=76  Identities=16%  Similarity=0.086  Sum_probs=51.9

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe-cc-ccCCCCCCCHHHHcccccccccccCcCccchHHHH
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY-CD-MDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQF  111 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy-~g-~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~~~f  111 (298)
                      -.+|++-+|+||||+||||++-.|.+..+     ++.|.+| .| .++....-....+.++...+ +.-...+..++.+.
T Consensus        28 v~~Gelr~lIGpNGAGKTT~mD~ItGKtr-----p~~G~v~f~g~~dl~~~~e~~IAr~GIGRKF-Q~PtVfe~ltV~eN  101 (249)
T COG4674          28 VDPGELRVLIGPNGAGKTTLMDVITGKTR-----PQEGEVLFDGDTDLTKLPEHRIARAGIGRKF-QKPTVFENLTVREN  101 (249)
T ss_pred             ecCCeEEEEECCCCCCceeeeeeecccCC-----CCcceEEEcCchhhccCCHHHHHHhccCccc-cCCeehhhccHHHH
Confidence            35678899999999999999999998877     8888884 55 56653332333444554432 22344567777776


Q ss_pred             HHHH
Q psy8556         112 CEDA  115 (298)
Q Consensus       112 ~~~~  115 (298)
                      .+.+
T Consensus       102 LelA  105 (249)
T COG4674         102 LELA  105 (249)
T ss_pred             HHHH
Confidence            6544

>PRK12338 hypothetical protein; Provisional

Probab=97.77  E-value=5.1e-05  Score=71.22  Aligned_cols=34  Identities=18%  Similarity=0.279  Sum_probs=29.2

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCCCeEe-ecC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIPCEII-SID   69 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~ii-s~D   69 (298)
                      +|.+|+|.|++||||||++..||..++...+ +.|
T Consensus         3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD   37 (319)
T PRK12338          3 KPYVILIGSASGIGKSTIASELARTLNIKHLIETD   37 (319)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccCh
Confidence            5789999999999999999999999986654 444

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=97.77  E-value=2.2e-05  Score=67.24  Aligned_cols=32  Identities=31%  Similarity=0.348  Sum_probs=28.7

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          39 KVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      +|+|+||+||||||+++.|++.++...++++.
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d   32 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGD   32 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCeEEECCh
Confidence            48899999999999999999999988887654

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.77  E-value=2.8e-05  Score=67.35  Aligned_cols=34  Identities=26%  Similarity=0.472  Sum_probs=27.8

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV   73 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv   73 (298)
                      +.+..++|+|||||||||+++.|++.++     ++.+.+
T Consensus        23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~-----~~~~~i   56 (186)
T cd01130          23 EARKNILISGGTGSGKTTLLNALLAFIP-----PDERII   56 (186)
T ss_pred             hCCCEEEEECCCCCCHHHHHHHHHhhcC-----CCCCEE
Confidence            3467899999999999999999998876     455544

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PLN03140 ABC transporter G family member; Provisional

Probab=97.76  E-value=2.8e-05  Score=86.22  Aligned_cols=41  Identities=22%  Similarity=0.386  Sum_probs=34.9

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecC---CceE-eccccCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISID---SALV-YCDMDIG   80 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~D---s~qv-y~g~~i~   80 (298)
                      ++|++++|+||||||||||++.|++.+.     ++   +|+| |+|.++.
T Consensus       189 ~~Ge~~~llGpnGSGKSTLLk~LaG~l~-----~~~~~~G~I~~nG~~~~  233 (1470)
T PLN03140        189 KPSRMTLLLGPPSSGKTTLLLALAGKLD-----PSLKVSGEITYNGYRLN  233 (1470)
T ss_pred             eCCeEEEEEcCCCCCHHHHHHHHhCCCC-----CCCcceeEEEECCEech
Confidence            5677899999999999999999999876     44   7888 7887764

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.75  E-value=1.9e-05  Score=68.07  Aligned_cols=24  Identities=25%  Similarity=0.196  Sum_probs=21.9

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHH
Q psy8556          35 FRKTKVAILGPTASGKSSVALKIS   58 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La   58 (298)
                      ++|++++|+||||||||||++.+.
T Consensus        19 ~~G~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          19 PLNVLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHh
Confidence            567899999999999999999885

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=97.74  E-value=2.7e-05  Score=67.04  Aligned_cols=40  Identities=15%  Similarity=0.356  Sum_probs=32.8

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      ..|+++-++||||+|||||+..+|+.++      -||.| +.|.++.
T Consensus        23 ~aGe~~HliGPNGaGKSTLLA~lAGm~~------~sGsi~~~G~~l~   63 (248)
T COG4138          23 RAGEILHLVGPNGAGKSTLLARMAGMTS------GSGSIQFAGQPLE   63 (248)
T ss_pred             ccceEEEEECCCCccHHHHHHHHhCCCC------CCceEEECCcchh
Confidence            4578999999999999999999999875      35556 6776654

>PRK03839 putative kinase; Provisional

Probab=97.74  E-value=2.7e-05  Score=66.76  Aligned_cols=32  Identities=25%  Similarity=0.429  Sum_probs=29.3

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          39 KVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      .|+|+|++||||||+++.||+.++..+++.|.
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~   33 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTE   33 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEehhh
Confidence            58999999999999999999999988887775

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=97.74  E-value=2.4e-05  Score=71.40  Aligned_cols=40  Identities=23%  Similarity=0.260  Sum_probs=33.6

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-ecccc
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMD   78 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~   78 (298)
                      -++|.+++++||||+||||+++.|.+.+.     |++|.| ..|.+
T Consensus        47 IP~G~ivgflGaNGAGKSTtLKmLTGll~-----p~~G~v~V~G~~   87 (325)
T COG4586          47 IPKGEIVGFLGANGAGKSTTLKMLTGLLL-----PTSGKVRVNGKD   87 (325)
T ss_pred             cCCCcEEEEEcCCCCcchhhHHHHhCccc-----cCCCeEEecCcC
Confidence            37889999999999999999999987665     888888 45543

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=97.73  E-value=5.6e-05  Score=74.06  Aligned_cols=43  Identities=30%  Similarity=0.278  Sum_probs=36.3

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCe-EeecCC-ceEeccc
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCE-IISIDS-ALVYCDM   77 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~-iis~Ds-~qvy~g~   77 (298)
                      ++|.+|.++|+|||||||++..||..++.. +|+.|+ .+++++.
T Consensus       253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~lr~~  297 (475)
T PRK12337        253 PRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVLRAM  297 (475)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHHHhh
Confidence            458899999999999999999999999976 789997 4555544

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.70  E-value=2.9e-05  Score=61.57  Aligned_cols=24  Identities=33%  Similarity=0.544  Sum_probs=21.7

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHH
Q psy8556          35 FRKTKVAILGPTASGKSSVALKIS   58 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La   58 (298)
                      +++++++|+||||||||||++.+.
T Consensus        13 ~~ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          13 YGKVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             cCCEEEEEEcCCCCCHHHHHHHhh
Confidence            457899999999999999999986

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=97.70  E-value=6.8e-05  Score=64.29  Aligned_cols=91  Identities=20%  Similarity=0.168  Sum_probs=54.0

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHH-cccccccccccCcCccchHHHHHHHHHH
Q psy8556          39 KVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIER-EITPHHLIDIIEPTKSYSVIQFCEDALF  117 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~-~~v~~~l~~~~~~~e~~s~~~f~~~~~~  117 (298)
                      ++.|+|++||||||++..++..++..++       |    +.|..|...|+ ..+.+|...-  +..-.++..+.. ..+
T Consensus         3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~-------~----iat~~~~~~e~~~ri~~h~~~R--~~~w~t~E~~~~-l~~   68 (170)
T PRK05800          3 LILVTGGARSGKSRFAERLAAQSGLQVL-------Y----IATAQPFDDEMAARIAHHRQRR--PAHWQTVEEPLD-LAE   68 (170)
T ss_pred             EEEEECCCCccHHHHHHHHHHHcCCCcE-------e----CcCCCCChHHHHHHHHHHHhcC--CCCCeEeccccc-HHH
Confidence            6899999999999999999987653332       2    34555555554 6676765432  221112222221 222


Q ss_pred             hhHHHhhcCCceEEEchhHHHHHHHHc
Q psy8556         118 SIKNILKKKKLPLLVGGTMLYFKALRD  144 (298)
Q Consensus       118 ~i~~i~~~~~~~IlvGGt~~y~~~ll~  144 (298)
                      .+......+. .|++-+...|+..++.
T Consensus        69 ~i~~~~~~~~-~VlID~Lt~~~~n~l~   94 (170)
T PRK05800         69 LLRADAAPGR-CVLVDCLTTWVTNLLF   94 (170)
T ss_pred             HHHhhcCCCC-EEEehhHHHHHHHHhc
Confidence            3333223333 5788888888877764

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=97.70  E-value=3e-05  Score=86.21  Aligned_cols=41  Identities=15%  Similarity=0.185  Sum_probs=34.9

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEec--cccCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYC--DMDIG   80 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~--g~~i~   80 (298)
                      ++|++++|+||||||||||++.|++.+.     +++|+|+-  |.++.
T Consensus       409 ~~Ge~vaIvG~SGsGKSTLl~lL~gl~~-----p~~G~I~i~~g~~i~  451 (1466)
T PTZ00265        409 TEGKTYAFVGESGCGKSTILKLIERLYD-----PTEGDIIINDSHNLK  451 (1466)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHhcc-----CCCCeEEEeCCcchh
Confidence            5677899999999999999999999987     88999853  45554

>KOG0056|consensus

Probab=97.69  E-value=3.1e-05  Score=75.71  Aligned_cols=58  Identities=19%  Similarity=0.297  Sum_probs=42.9

Q ss_pred             ccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          13 ETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      =.|-.+.-.+.|+++     +-.+|++++++||||+||||+++.|-+.+.     ..+|.| ..|.||.
T Consensus       545 F~Y~p~k~vl~disF-----~v~pGktvAlVG~SGaGKSTimRlLfRffd-----v~sGsI~iDgqdIr  603 (790)
T KOG0056|consen  545 FAYDPGKPVLSDISF-----TVQPGKTVALVGPSGAGKSTIMRLLFRFFD-----VNSGSITIDGQDIR  603 (790)
T ss_pred             EecCCCCceeecceE-----EecCCcEEEEECCCCCchhHHHHHHHHHhh-----ccCceEEEcCchHH
Confidence            345444444555544     335678999999999999999999999987     667777 6777775

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=97.69  E-value=3.5e-05  Score=75.67  Aligned_cols=47  Identities=13%  Similarity=0.077  Sum_probs=33.5

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCc-eE-eccccCCCCCCCHHHHc
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSA-LV-YCDMDIGTNKPSIIERE   90 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~-qv-y~g~~i~t~kp~~~e~~   90 (298)
                      .+|++++|+||||||||||++  ++...     +++| .| +.|.++..  |+..++.
T Consensus        30 ~~GEiv~L~G~SGsGKSTLLr--~~l~~-----~~sGg~I~ldg~~~~~--~~~~ai~   78 (504)
T TIGR03238        30 PSSSLLFLCGSSGDGKSEILA--ENKRK-----FSEGYEFFLDATHSFS--PNKNAME   78 (504)
T ss_pred             cCCCEEEEECCCCCCHHHHHh--cCCCC-----CCCCCEEEECCEECCC--CCHHHHH
Confidence            568899999999999999999  33333     5666 57 67777764  4444433

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.68  E-value=4.4e-05  Score=65.43  Aligned_cols=35  Identities=23%  Similarity=0.267  Sum_probs=32.1

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY   74 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy   74 (298)
                      +.|+.+++-||||||||||++.|...+.     +|+|||.
T Consensus        35 ~aGECvvL~G~SG~GKStllr~LYaNY~-----~d~G~I~   69 (235)
T COG4778          35 NAGECVVLHGPSGSGKSTLLRSLYANYL-----PDEGQIL   69 (235)
T ss_pred             cCccEEEeeCCCCCcHHHHHHHHHhccC-----CCCceEE
Confidence            5688999999999999999999998887     9999994

>PRK05541 adenylylsulfate kinase; Provisional

Probab=97.68  E-value=3.2e-05  Score=66.06  Aligned_cols=30  Identities=23%  Similarity=0.257  Sum_probs=26.5

Q ss_pred             ccCCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          33 LLFRKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        33 ~~~kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      +..+|.+|+|+|++||||||+++.|++.+.
T Consensus         3 ~~~~~~~I~i~G~~GsGKst~a~~l~~~l~   32 (176)
T PRK05541          3 MKPNGYVIWITGLAGSGKTTIAKALYERLK   32 (176)
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            346788999999999999999999998875

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=97.67  E-value=3.7e-05  Score=63.63  Aligned_cols=31  Identities=16%  Similarity=0.440  Sum_probs=28.4

Q ss_pred             EEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          40 VAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      |+|+|++||||||+++.|+..++...++.|.
T Consensus         2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~   32 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDE   32 (154)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCCEEEchH
Confidence            7899999999999999999999988887774

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.67  E-value=3.3e-05  Score=66.78  Aligned_cols=36  Identities=28%  Similarity=0.495  Sum_probs=28.0

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEecc
Q psy8556          39 KVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCD   76 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g   76 (298)
                      .|.|+||+||||||+|+.|++.++..-+  |.+.++++
T Consensus         2 riiilG~pGaGK~T~A~~La~~~~i~hl--stgd~~r~   37 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKKLGLPHL--DTGDILRA   37 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCcEE--cHhHHhHh
Confidence            4789999999999999999999765444  44445543

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=97.66  E-value=4e-05  Score=65.51  Aligned_cols=30  Identities=20%  Similarity=0.270  Sum_probs=25.9

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCCCeE
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIPCEI   65 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~i   65 (298)
                      ++++|+|.|++||||||+++.|+..++...
T Consensus         1 ~~~~i~l~G~~gsGKst~a~~l~~~~~~~~   30 (175)
T cd00227           1 TGRIIILNGGSSAGKSSIARALQSVLAEPW   30 (175)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhhCCCc
Confidence            367899999999999999999998876443

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional

Probab=97.65  E-value=2.7e-05  Score=80.14  Aligned_cols=64  Identities=27%  Similarity=0.307  Sum_probs=45.7

Q ss_pred             hhhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEecccc
Q psy8556           9 DRDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMD   78 (298)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~   78 (298)
                      ..++++||+=   ..++..+..... ++..+|+|.||+||||||+++.||+.++.++  .|++++|+...
T Consensus       418 ~~v~ksyP~F---~~~l~~Lg~~~~-~~~~~i~i~g~~~~gks~~~~~l~~~~~~~~--~~~~~~~~~~~  481 (661)
T PRK11860        418 KCVAKTFPDY---FEALFSVAQADA-DRVPVICIDGPTASGKGTVAARVAEALGYHY--LDSGALYRLTA  481 (661)
T ss_pred             CeeecCCCCh---HHHHHHhcCCcc-cCcceEEeeCCCCCCHHHHHHHHHHHhCCeE--ecHHHhhhHHH
Confidence            3467888873   333333222221 2245899999999999999999999999887  57777987653

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.65  E-value=0.00059  Score=58.16  Aligned_cols=157  Identities=17%  Similarity=0.146  Sum_probs=78.7

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe---ccccCCCCCCCHHHHcccc---------cccccccCc
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY---CDMDIGTNKPSIIEREITP---------HHLIDIIEP  102 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy---~g~~i~t~kp~~~e~~~v~---------~~l~~~~~~  102 (298)
                      +.|+.+++.||||+|||||++.|.-+--     ++||+.-   ..++.. ..|+......++         +|+...+..
T Consensus        26 ~~getlvllgpsgagkssllr~lnlle~-----p~sg~l~ia~~~fd~s-~~~~~k~i~~lr~~vgmvfqqy~lwphltv   99 (242)
T COG4161          26 PEGETLVLLGPSGAGKSSLLRVLNLLEM-----PRSGTLNIAGNHFDFS-KTPSDKAIRDLRRNVGMVFQQYNLWPHLTV   99 (242)
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHhC-----CCCCeEEecccccccc-cCccHHHHHHHHHhhhhhhhhhccCchhHH
Confidence            4477899999999999999999854322     6777662   233333 233333222221         122222222


Q ss_pred             Ccc----------chHHHHHHHHHHhhHHHhh---cCCce-EEEchhH---HHHHHHHcc----CCCCCC--CCHHHHHH
Q psy8556         103 TKS----------YSVIQFCEDALFSIKNILK---KKKLP-LLVGGTM---LYFKALRDG----INKLPP--ANLKLRTK  159 (298)
Q Consensus       103 ~e~----------~s~~~f~~~~~~~i~~i~~---~~~~~-IlvGGt~---~y~~~ll~~----~~~~p~--~d~~lr~~  159 (298)
                      .++          ++-.+-...+.+.+..+.-   ..+.| -++||-.   ...++++-.    ++|.|.  .||++-..
T Consensus       100 ~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaq  179 (242)
T COG4161         100 QENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQ  179 (242)
T ss_pred             HHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHH
Confidence            111          1111222223333322211   23445 4788876   456777743    456664  48888777


Q ss_pred             HHHHHHhhCHHHHHHHHhcCCccccCCCCChHHHHHHHHHHHHHHHhcc
Q psy8556         160 FNIDINKYGISFLYDKLKLLDPVTANQPSNRHILHKRISDRFKKMLDQD  208 (298)
Q Consensus       160 l~~~~~~~g~~~l~~~L~~~Dp~~a~~~~~r~~L~~ri~~Rv~~M~~~G  208 (298)
                      +-..+++.....+.+.+.          ...-...++++.||--| ++|
T Consensus       180 vv~iikel~~tgitqviv----------thev~va~k~as~vvym-e~g  217 (242)
T COG4161         180 IVSIIKELAETGITQVIV----------THEVEVARKTASRVVYM-ENG  217 (242)
T ss_pred             HHHHHHHHHhcCceEEEE----------EeehhHHHhhhhheEee-ecC
Confidence            655544432211111110          12234556777887654 555

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.64  E-value=5e-05  Score=54.20  Aligned_cols=26  Identities=35%  Similarity=0.466  Sum_probs=21.7

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      .+.+..|+|||||||||++.++.-.+
T Consensus        22 ~g~~tli~G~nGsGKSTllDAi~~~L   47 (62)
T PF13555_consen   22 RGDVTLITGPNGSGKSTLLDAIQTVL   47 (62)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            34579999999999999999886544

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=97.63  E-value=4.1e-05  Score=64.77  Aligned_cols=37  Identities=27%  Similarity=0.490  Sum_probs=31.3

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccc
Q psy8556          39 KVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDM   77 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~   77 (298)
                      +|.|.||+||||||+++.||..++.+++|+  |.+|+++
T Consensus         2 ~ItIsG~pGsG~TTva~~lAe~~gl~~vsa--G~iFR~~   38 (179)
T COG1102           2 VITISGLPGSGKTTVARELAEHLGLKLVSA--GTIFREM   38 (179)
T ss_pred             EEEeccCCCCChhHHHHHHHHHhCCceeec--cHHHHHH
Confidence            689999999999999999999999888754  4466543

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.63  E-value=6.3e-05  Score=59.40  Aligned_cols=27  Identities=26%  Similarity=0.444  Sum_probs=24.3

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCCC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIPC   63 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~~   63 (298)
                      +..+.|+||+||||||++..|+..+..
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~   28 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGP   28 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCC
Confidence            567999999999999999999998863

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.62  E-value=3.5e-05  Score=67.55  Aligned_cols=34  Identities=29%  Similarity=0.557  Sum_probs=28.3

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCC-----CeEeecCC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIP-----CEIISIDS   70 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~-----~~iis~Ds   70 (298)
                      |.+++++||||+||||.+..||..+.     ..+|++|.
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~   39 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADT   39 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEEST
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCC
Confidence            57899999999999999999987652     45677775

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK13947 shikimate kinase; Provisional

Probab=97.60  E-value=5.7e-05  Score=63.91  Aligned_cols=31  Identities=19%  Similarity=0.472  Sum_probs=28.8

Q ss_pred             EEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          40 VAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      |+|+|++||||||+++.||..++..+++.|.
T Consensus         4 I~l~G~~GsGKst~a~~La~~lg~~~id~d~   34 (171)
T PRK13947          4 IVLIGFMGTGKTTVGKRVATTLSFGFIDTDK   34 (171)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCCEEECch
Confidence            8999999999999999999999988887775

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.60  E-value=4.9e-05  Score=60.78  Aligned_cols=34  Identities=26%  Similarity=0.600  Sum_probs=28.5

Q ss_pred             EEEECCCchhHHHHHHHHHhhCCCeEeecCCceE
Q psy8556          40 VAILGPTASGKSSVALKISEYIPCEIISIDSALV   73 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv   73 (298)
                      |.|.||+|+|||++++.+|+.++..++..+.+.+
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~   34 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSEL   34 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHH
T ss_pred             CEEECcCCCCeeHHHHHHHhhccccccccccccc
Confidence            5799999999999999999999877766665333

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PLN03073 ABC transporter F family; Provisional

Probab=97.59  E-value=2.4e-05  Score=81.14  Aligned_cols=60  Identities=12%  Similarity=0.053  Sum_probs=40.5

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccc
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDM   77 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~   77 (298)
                      ..+..|+++ .++.++++     .-.+|+.++|+||||||||||++.|++..-.. + +++++| |.+.
T Consensus       182 nls~~y~~~-~ll~~isl-----~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g-~-p~~g~I~~~~Q  242 (718)
T PLN03073        182 NFSISVGGR-DLIVDASV-----TLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDG-I-PKNCQILHVEQ  242 (718)
T ss_pred             eEEEEeCCC-EEEECCEE-----EECCCCEEEEECCCCCCHHHHHHHHcCCCCCC-C-CCCCEEEEEec
Confidence            356677543 46777666     22345679999999999999999999753100 2 567777 5443

>PLN02200 adenylate kinase family protein

Probab=97.59  E-value=6.8e-05  Score=67.56  Aligned_cols=36  Identities=25%  Similarity=0.209  Sum_probs=30.5

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      +.+.+|+|+||+||||||++..|++.++...|+++.
T Consensus        41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gd   76 (234)
T PLN02200         41 KTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGD   76 (234)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccH
Confidence            446789999999999999999999999877665543

>PLN03130 ABC transporter C family member; Provisional

Probab=97.59  E-value=0.00018  Score=80.92  Aligned_cols=35  Identities=34%  Similarity=0.339  Sum_probs=30.7

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC-ceEe
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDS-ALVY   74 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds-~qvy   74 (298)
                      ++|++++|+||||||||||++.|.+.+.     +++ |.|.
T Consensus       641 ~~Ge~vaIvG~sGSGKSTLl~lLlG~~~-----~~~GG~I~  676 (1622)
T PLN03130        641 PVGSLVAIVGSTGEGKTSLISAMLGELP-----PRSDASVV  676 (1622)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHhhc-----cCCCceEE
Confidence            6788999999999999999999999887     666 6663

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=97.59  E-value=5.5e-05  Score=63.67  Aligned_cols=31  Identities=35%  Similarity=0.554  Sum_probs=28.4

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556          39 KVAILGPTASGKSSVALKISEYIPCEIISID   69 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~D   69 (298)
                      +|+|.|++||||||+++.|++.++.++++.|
T Consensus         2 iI~i~G~~GSGKstia~~la~~lg~~~~~~~   32 (171)
T TIGR02173         2 IITISGPPGSGKTTVAKILAEKLSLKLISAG   32 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCceecHH
Confidence            6999999999999999999999998887765

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=97.58  E-value=5.3e-05  Score=67.92  Aligned_cols=25  Identities=24%  Similarity=0.301  Sum_probs=22.5

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      |.+++|+||||||||||+.+|+..+
T Consensus        23 ~~~~~i~GpNGsGKStll~ai~~~l   47 (243)
T cd03272          23 PKHNVVVGRNGSGKSNFFAAIRFVL   47 (243)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHH
Confidence            6789999999999999999998654

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=97.58  E-value=6.5e-05  Score=76.75  Aligned_cols=54  Identities=19%  Similarity=0.264  Sum_probs=37.6

Q ss_pred             hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccC
Q psy8556          19 RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDI   79 (298)
Q Consensus        19 ~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i   79 (298)
                      +.+++|++.     .-++|++++|+||||||||||++.|++......  ..+|+| ++|.++
T Consensus        38 ~~iL~~vs~-----~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~--~~~G~i~~~g~~~   92 (617)
T TIGR00955        38 KHLLKNVSG-----VAKPGELLAVMGSSGAGKTTLMNALAFRSPKGV--KGSGSVLLNGMPI   92 (617)
T ss_pred             cccccCCEE-----EEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCC--cceeEEEECCEEC
Confidence            345555554     224567899999999999999999998764210  136777 577655

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=97.58  E-value=6.6e-05  Score=65.71  Aligned_cols=33  Identities=27%  Similarity=0.374  Sum_probs=30.3

Q ss_pred             eEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          38 TKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      .+|+|+|+.||||||+++.|+..++..++++|.
T Consensus         2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~   34 (195)
T PRK14730          2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADI   34 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcH
Confidence            369999999999999999999988999998885

>PRK14532 adenylate kinase; Provisional

Probab=97.58  E-value=6.7e-05  Score=64.68  Aligned_cols=31  Identities=26%  Similarity=0.386  Sum_probs=27.9

Q ss_pred             EEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          40 VAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      |+|+||+||||||+++.||+.++...|+++.
T Consensus         3 i~~~G~pGsGKsT~a~~la~~~g~~~is~~d   33 (188)
T PRK14532          3 LILFGPPAAGKGTQAKRLVEERGMVQLSTGD   33 (188)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCeEEeCcH
Confidence            7899999999999999999999988877654

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=97.58  E-value=5.8e-05  Score=68.31  Aligned_cols=27  Identities=30%  Similarity=0.210  Sum_probs=24.6

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      .+.+.+|+||||||||||+.+|+..++
T Consensus        24 ~~~~~~IvG~NGsGKStll~Ai~~ll~   50 (251)
T cd03273          24 DPQFNAITGLNGSGKSNILDAICFVLG   50 (251)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence            467899999999999999999998876

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.56  E-value=7.7e-05  Score=54.15  Aligned_cols=23  Identities=48%  Similarity=0.642  Sum_probs=21.1

Q ss_pred             EEEEECCCchhHHHHHHHHHhhC
Q psy8556          39 KVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      +|+|+|++||||||+++.|+..+
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999999885

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=97.56  E-value=5.2e-05  Score=67.23  Aligned_cols=25  Identities=36%  Similarity=0.390  Sum_probs=22.0

Q ss_pred             eEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          38 TKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      ++++|+|||||||||++++|...++
T Consensus        26 ~i~~ivGpNGaGKSTll~~i~~~~G   50 (212)
T cd03274          26 SFSAIVGPNGSGKSNVIDSMLFVFG   50 (212)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhc
Confidence            6899999999999999999975544

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>KOG0059|consensus

Probab=97.55  E-value=0.00034  Score=74.40  Aligned_cols=122  Identities=17%  Similarity=0.128  Sum_probs=71.8

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe-ccccCCCCCC---CHHHHcccccccccccCcCccchHH
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY-CDMDIGTNKP---SIIEREITPHHLIDIIEPTKSYSVI  109 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy-~g~~i~t~kp---~~~e~~~v~~~l~~~~~~~e~~s~~  109 (298)
                      =++++..++.|||||||||+.+.+.+...     +++|+++ +|.++.+...   ....+...|++    ....+.+|..
T Consensus       588 V~~gecfgLLG~NGAGKtT~f~mltG~~~-----~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~----d~l~~~lT~r  658 (885)
T KOG0059|consen  588 VPPGECFGLLGVNGAGKTTTFKMLTGETK-----PTSGEALIKGHDITVSTDFQQVRKQLGYCPQF----DALWEELTGR  658 (885)
T ss_pred             ecCCceEEEecCCCCCchhhHHHHhCCcc-----CCcceEEEecCccccccchhhhhhhcccCCch----hhhhhhccHH
Confidence            36789999999999999999999987766     8999986 6777764322   22344555654    1222333333


Q ss_pred             HHHH-----------HHHHhhHHHhh--------cCCceEEEchhH---HHHHHHHcc----CCCCCC--CCHHHHHHHH
Q psy8556         110 QFCE-----------DALFSIKNILK--------KKKLPLLVGGTM---LYFKALRDG----INKLPP--ANLKLRTKFN  161 (298)
Q Consensus       110 ~f~~-----------~~~~~i~~i~~--------~~~~~IlvGGt~---~y~~~ll~~----~~~~p~--~d~~lr~~l~  161 (298)
                      +...           +..+.++....        ...+....||..   ...-|++-.    +.|.|.  .||.-|+.+.
T Consensus       659 EhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW  738 (885)
T KOG0059|consen  659 EHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLW  738 (885)
T ss_pred             HHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHH
Confidence            2221           11112222211        123456788877   344555543    345665  4888777765


Q ss_pred             HHH
Q psy8556         162 IDI  164 (298)
Q Consensus       162 ~~~  164 (298)
                      ..+
T Consensus       739 ~ii  741 (885)
T KOG0059|consen  739 DII  741 (885)
T ss_pred             HHH
Confidence            443

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=97.54  E-value=8e-05  Score=64.09  Aligned_cols=31  Identities=29%  Similarity=0.441  Sum_probs=28.4

Q ss_pred             EEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          40 VAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      |+|+||+||||||++..|++.++...+++|.
T Consensus         2 I~i~G~pGsGKst~a~~La~~~~~~~i~~~~   32 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKKYGLPHISTGD   32 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCeEEECcH
Confidence            7899999999999999999999988887765

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PRK00889 adenylylsulfate kinase; Provisional

Probab=97.54  E-value=7.5e-05  Score=63.67  Aligned_cols=28  Identities=25%  Similarity=0.370  Sum_probs=25.4

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      .+|++|+|+|++||||||+++.|++.+.
T Consensus         2 ~~g~~i~~~G~~GsGKST~a~~la~~l~   29 (175)
T PRK00889          2 QRGVTVWFTGLSGAGKTTIARALAEKLR   29 (175)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4688999999999999999999998873

>PRK04182 cytidylate kinase; Provisional

Probab=97.53  E-value=7.1e-05  Score=63.46  Aligned_cols=31  Identities=32%  Similarity=0.469  Sum_probs=27.7

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556          39 KVAILGPTASGKSSVALKISEYIPCEIISID   69 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~D   69 (298)
                      +|+|+|++||||||+++.|+..++.+++++|
T Consensus         2 ~I~i~G~~GsGKstia~~la~~lg~~~id~~   32 (180)
T PRK04182          2 IITISGPPGSGKTTVARLLAEKLGLKHVSAG   32 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCcEecHH
Confidence            6899999999999999999999998777543

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=97.52  E-value=0.0001  Score=64.38  Aligned_cols=32  Identities=31%  Similarity=0.444  Sum_probs=29.3

Q ss_pred             eEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          38 TKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      .+|+|+|+.||||||+++.|+. ++..++++|.
T Consensus         3 ~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~   34 (194)
T PRK00081          3 LIIGLTGGIGSGKSTVANLFAE-LGAPVIDADA   34 (194)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-cCCEEEEecH
Confidence            5799999999999999999988 8888998885

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=97.52  E-value=9.7e-05  Score=71.60  Aligned_cols=37  Identities=16%  Similarity=0.311  Sum_probs=30.7

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHhhCC-----CeEeecCC
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISEYIP-----CEIISIDS   70 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~-----~~iis~Ds   70 (298)
                      ..++-+|+|+|++|||||||++.|.+.+.     ..+|+.|+
T Consensus       209 ~~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDD  250 (460)
T PLN03046        209 DIPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDD  250 (460)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECC
Confidence            34678999999999999999999988773     34577776

>PTZ00088 adenylate kinase 1; Provisional

Probab=97.51  E-value=0.00011  Score=66.06  Aligned_cols=34  Identities=21%  Similarity=0.310  Sum_probs=30.1

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      +..|+|+||+||||||+++.||+.++...|+.+.
T Consensus         6 ~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gd   39 (229)
T PTZ00088          6 PLKIVLFGAPGVGKGTFAEILSKKENLKHINMGN   39 (229)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCcEEECCh
Confidence            3449999999999999999999999988887775

>PRK14531 adenylate kinase; Provisional

Probab=97.51  E-value=9.6e-05  Score=63.75  Aligned_cols=31  Identities=23%  Similarity=0.393  Sum_probs=27.8

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556          39 KVAILGPTASGKSSVALKISEYIPCEIISID   69 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~D   69 (298)
                      .|+|+||+||||||++..||..++...||++
T Consensus         4 ~i~i~G~pGsGKsT~~~~la~~~g~~~is~g   34 (183)
T PRK14531          4 RLLFLGPPGAGKGTQAARLCAAHGLRHLSTG   34 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCeEecc
Confidence            5889999999999999999999997777654

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=97.51  E-value=9.7e-05  Score=68.31  Aligned_cols=34  Identities=21%  Similarity=0.186  Sum_probs=29.7

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhC-CCeEeecCC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYI-PCEIISIDS   70 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l-~~~iis~Ds   70 (298)
                      +.+|+++|++||||||+++.|++.+ +...++.|.
T Consensus         2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~   36 (300)
T PHA02530          2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDD   36 (300)
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccH
Confidence            4689999999999999999999998 677777765

>PLN03232 ABC transporter C family member; Provisional

Probab=97.50  E-value=0.00029  Score=78.72  Aligned_cols=28  Identities=29%  Similarity=0.292  Sum_probs=26.3

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      ++|+.++|+||||||||||++.|++.++
T Consensus       641 ~~Ge~vaIvG~sGSGKSTLl~lLlG~~~  668 (1495)
T PLN03232        641 PVGSLVAIVGGTGEGKTSLISAMLGELS  668 (1495)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCCc
Confidence            6788999999999999999999999886

>KOG0061|consensus

Probab=97.48  E-value=0.00019  Score=73.29  Aligned_cols=41  Identities=20%  Similarity=0.199  Sum_probs=32.9

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-ecc
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCD   76 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g   76 (298)
                      -++|++.+|+||+|||||||+..||+..+..  ...+|+| ++|
T Consensus        53 ~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~--~~~~G~ilvNG   94 (613)
T KOG0061|consen   53 AKPGELLAIMGPSGSGKTTLLNALAGRLNGG--LKLSGEILLNG   94 (613)
T ss_pred             EecCeEEEEECCCCCCHHHHHHHHhccccCC--CcceEEEEECC
Confidence            3678899999999999999999999987633  1346777 566

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=97.48  E-value=0.00015  Score=67.98  Aligned_cols=42  Identities=17%  Similarity=0.453  Sum_probs=36.1

Q ss_pred             cccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556          28 IRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISID   69 (298)
Q Consensus        28 ~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~D   69 (298)
                      ++......++..|+|+|++||||||+++.|++.++.+++..|
T Consensus       124 ~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D  165 (309)
T PRK08154        124 LGAGRRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN  165 (309)
T ss_pred             HhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence            555656677889999999999999999999999998888665

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=97.48  E-value=8.6e-05  Score=65.19  Aligned_cols=24  Identities=33%  Similarity=0.385  Sum_probs=22.0

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhh
Q psy8556          37 KTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      +++++|+||||||||||++.|++.
T Consensus        25 g~~~~ltGpNg~GKSTllr~i~~~   48 (199)
T cd03283          25 KNGILITGSNMSGKSTFLRTIGVN   48 (199)
T ss_pred             CcEEEEECCCCCChHHHHHHHHHH
Confidence            589999999999999999999864

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=97.48  E-value=0.00011  Score=62.28  Aligned_cols=32  Identities=16%  Similarity=0.452  Sum_probs=29.0

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          39 KVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      .|+|+|++||||||+++.||+.++.++++.|.
T Consensus         4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~   35 (171)
T PRK03731          4 PLFLVGARGCGKTTVGMALAQALGYRFVDTDQ   35 (171)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCEEEccH
Confidence            58899999999999999999999988887774

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=97.47  E-value=8.5e-05  Score=65.07  Aligned_cols=27  Identities=33%  Similarity=0.348  Sum_probs=23.8

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      .+| +++|+||||||||||++.|+..++
T Consensus        21 ~~g-~~~i~G~nGsGKStll~al~~l~~   47 (197)
T cd03278          21 PPG-LTAIVGPNGSGKSNIIDAIRWVLG   47 (197)
T ss_pred             CCC-cEEEECCCCCCHHHHHHHHHHHhc
Confidence            345 899999999999999999998764

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>TIGR00750 lao LAO/AO transport system ATPase

Probab=97.47  E-value=0.00039  Score=64.80  Aligned_cols=61  Identities=18%  Similarity=0.284  Sum_probs=45.3

Q ss_pred             HHHHhhhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCC-----CeEeecCC
Q psy8556           5 KDVLDRDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIP-----CEIISIDS   70 (298)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~-----~~iis~Ds   70 (298)
                      +-++..+++.++....++.++.+     ...++.+|+|+||+|||||||+..|+..+.     ..+++.|.
T Consensus         7 ~~~~~~~e~~~~~~~~~~~~~~~-----~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~   72 (300)
T TIGR00750         7 ARAITLVENRHPEAKQLLDRIMP-----YTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDP   72 (300)
T ss_pred             HHHHHHHhCCChHHHHHHHhCCc-----ccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence            34566777788877777777665     234578999999999999999999988652     34566663

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=97.47  E-value=0.0002  Score=68.79  Aligned_cols=62  Identities=23%  Similarity=0.210  Sum_probs=47.4

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHHHccccccccc
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIEREITPHHLID   98 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e~~~v~~~l~~   98 (298)
                      ..|++++|+|.||||||-.+..+.++++.+-...-+|.| |.|.++.  +.+..++..++..-+.
T Consensus        34 ~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll--~~se~~lr~iRG~~I~   96 (534)
T COG4172          34 EAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLL--AASERQLRGVRGNKIG   96 (534)
T ss_pred             cCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhh--cCCHHHHhhhcccceE
Confidence            456789999999999999999999999865444556777 9998887  4456667766654333

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=97.47  E-value=0.0001  Score=63.38  Aligned_cols=31  Identities=32%  Similarity=0.462  Sum_probs=28.4

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          39 KVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      +|+|+|+.||||||+++.|+. ++..++++|.
T Consensus         1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~   31 (179)
T cd02022           1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADK   31 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHH-CCCCEEecCH
Confidence            489999999999999999998 8888998885

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>PRK03846 adenylylsulfate kinase; Provisional

Probab=97.45  E-value=0.00012  Score=63.89  Aligned_cols=32  Identities=25%  Similarity=0.194  Sum_probs=27.4

Q ss_pred             cccccCCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          30 TGKLLFRKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        30 ~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      ++....+|.+++|+|++|||||||++.|++.+
T Consensus        17 ~~~~~~~~~~i~i~G~~GsGKSTla~~l~~~l   48 (198)
T PRK03846         17 EQLHGHKGVVLWFTGLSGSGKSTVAGALEEAL   48 (198)
T ss_pred             HHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            34444678999999999999999999999876

>PRK01184 hypothetical protein; Provisional

Probab=97.44  E-value=0.00012  Score=62.81  Aligned_cols=31  Identities=16%  Similarity=0.355  Sum_probs=26.6

Q ss_pred             eEEEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556          38 TKVAILGPTASGKSSVALKISEYIPCEIISID   69 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~l~~~iis~D   69 (298)
                      .+|+|+||+||||||+++ +++.++..+++.+
T Consensus         2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~   32 (184)
T PRK01184          2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVMG   32 (184)
T ss_pred             cEEEEECCCCCCHHHHHH-HHHHcCCcEEEhh
Confidence            479999999999999987 7788888888764

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.44  E-value=8.9e-05  Score=71.23  Aligned_cols=36  Identities=31%  Similarity=0.496  Sum_probs=30.4

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCC-------CeEeecCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIP-------CEIISIDS   70 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~-------~~iis~Ds   70 (298)
                      .++.+++++||||+||||.+..||..+.       ..+|+.|+
T Consensus       201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDt  243 (407)
T COG1419         201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDT  243 (407)
T ss_pred             ccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEecc
Confidence            5689999999999999999888887653       56788886

>TIGR01351 adk adenylate kinases

Probab=97.43  E-value=0.00011  Score=64.78  Aligned_cols=31  Identities=35%  Similarity=0.487  Sum_probs=27.9

Q ss_pred             EEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          40 VAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      |+|+||+||||||++..|+..++...|+++.
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gd   32 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGD   32 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCCeeehhH
Confidence            7899999999999999999999988887654

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>COG0645 Predicted kinase [General function prediction only]

Probab=97.43  E-value=0.0011  Score=56.43  Aligned_cols=33  Identities=27%  Similarity=0.291  Sum_probs=30.5

Q ss_pred             eEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          38 TKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      .++.+.|-+||||||+++.|+..+++..|+.|.
T Consensus         2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~   34 (170)
T COG0645           2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDV   34 (170)
T ss_pred             eEEEEecCCCccHhHHHHHHHhhcCceEEehHH
Confidence            468899999999999999999999999998886

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=97.43  E-value=9.6e-05  Score=81.95  Aligned_cols=45  Identities=16%  Similarity=0.105  Sum_probs=35.3

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      ++|++++|+||||||||||++.|++.... ...+++|+| |+|.++.
T Consensus        85 ~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~-~~~~~~G~I~~~G~~~~  130 (1394)
T TIGR00956        85 KPGELTVVLGRPGSGCSTLLKTIASNTDG-FHIGVEGVITYDGITPE  130 (1394)
T ss_pred             ECCEEEEEECCCCCCHHHHHHHHhCCCCC-CCCCceeEEEECCEehH
Confidence            45778999999999999999999987632 122578888 7887653

>PLN02199 shikimate kinase

Probab=97.42  E-value=0.00017  Score=66.99  Aligned_cols=35  Identities=20%  Similarity=0.334  Sum_probs=31.5

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      ++..|+|+|.+||||||+++.||+.++.++|..|.
T Consensus       101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~  135 (303)
T PLN02199        101 NGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDT  135 (303)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHH
Confidence            35679999999999999999999999999988775

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.41  E-value=0.00016  Score=59.53  Aligned_cols=30  Identities=20%  Similarity=0.175  Sum_probs=26.8

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHhhCCC
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISEYIPC   63 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~~   63 (298)
                      .+++.+++|.|+.|||||||++.+++.++.
T Consensus        19 l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~   48 (133)
T TIGR00150        19 LDFGTVVLLKGDLGAGKTTLVQGLLQGLGI   48 (133)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            356789999999999999999999999873

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.41  E-value=8.2e-05  Score=59.19  Aligned_cols=22  Identities=32%  Similarity=0.579  Sum_probs=20.7

Q ss_pred             EEEECCCchhHHHHHHHHHhhC
Q psy8556          40 VAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~~l   61 (298)
                      |+|.|++||||||+++.|++.+
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            6899999999999999999886

...

>PRK04040 adenylate kinase; Provisional

Probab=97.41  E-value=0.00016  Score=62.91  Aligned_cols=34  Identities=24%  Similarity=0.324  Sum_probs=28.4

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhC--CCeEeecCC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYI--PCEIISIDS   70 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l--~~~iis~Ds   70 (298)
                      +.+|+|+|++||||||+++.|+..+  +..+++.++
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~   37 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGD   37 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecch
Confidence            5689999999999999999999998  555555544

>smart00763 AAA_PrkA PrkA AAA domain

Probab=97.39  E-value=0.00011  Score=69.99  Aligned_cols=40  Identities=28%  Similarity=0.309  Sum_probs=31.3

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY   74 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy   74 (298)
                      ..+.++++|+||+|||||||+..|++.++ ..-+.+.|-+|
T Consensus        75 ~~~r~il~L~GPPGsGKStla~~La~~l~-~ys~t~eG~~Y  114 (361)
T smart00763       75 EERKQILYLLGPVGGGKSSLVECLKRGLE-EYSKTPEGRRY  114 (361)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHh-hhcccccCceE
Confidence            34568999999999999999999999885 33345556665

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>PRK14528 adenylate kinase; Provisional

Probab=97.39  E-value=0.00016  Score=62.73  Aligned_cols=32  Identities=25%  Similarity=0.436  Sum_probs=28.7

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          39 KVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      .|+|+||+||||||+++.|++.++...++.+.
T Consensus         3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~   34 (186)
T PRK14528          3 NIIFMGPPGAGKGTQAKILCERLSIPQISTGD   34 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCeeeCCH
Confidence            58899999999999999999999988887664

>PRK00625 shikimate kinase; Provisional

Probab=97.39  E-value=0.00014  Score=62.56  Aligned_cols=32  Identities=16%  Similarity=0.394  Sum_probs=29.2

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          39 KVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      .|+|+|+.||||||+++.||+.++...++.|.
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~   33 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDD   33 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhH
Confidence            48999999999999999999999988888775

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.39  E-value=0.00017  Score=62.35  Aligned_cols=52  Identities=13%  Similarity=0.058  Sum_probs=35.9

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV   73 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv   73 (298)
                      .-|.|++.+- +...|.     ...+|.+|.|+|.|||||||+++++.-+-.     ++.|+|
T Consensus        12 lHK~~G~~eV-LKGvSL-----~A~~GdVisIIGsSGSGKSTfLRCiN~LE~-----P~~G~I   63 (256)
T COG4598          12 LHKRYGEHEV-LKGVSL-----QANAGDVISIIGSSGSGKSTFLRCINFLEK-----PSAGSI   63 (256)
T ss_pred             HHhhcccchh-hcceee-----ecCCCCEEEEecCCCCchhHHHHHHHhhcC-----CCCceE
Confidence            3466666553 344444     224578999999999999999999954433     556666

>PRK02496 adk adenylate kinase; Provisional

Probab=97.37  E-value=0.00015  Score=62.31  Aligned_cols=32  Identities=28%  Similarity=0.487  Sum_probs=27.8

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          39 KVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      .++|+||+||||||+++.|++.++...++.+.
T Consensus         3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~   34 (184)
T PRK02496          3 RLIFLGPPGAGKGTQAVVLAEHLHIPHISTGD   34 (184)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEEhHH
Confidence            48899999999999999999999877776653

>PRK08356 hypothetical protein; Provisional

Probab=97.37  E-value=0.00024  Score=61.86  Aligned_cols=33  Identities=30%  Similarity=0.320  Sum_probs=26.9

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      ..+|+|+||+||||||+++.|.. ++..+|+...
T Consensus         5 ~~~i~~~G~~gsGK~t~a~~l~~-~g~~~is~~~   37 (195)
T PRK08356          5 KMIVGVVGKIAAGKTTVAKFFEE-KGFCRVSCSD   37 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHH-CCCcEEeCCC
Confidence            35799999999999999999964 6766666553

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=97.37  E-value=0.0012  Score=66.67  Aligned_cols=35  Identities=20%  Similarity=0.422  Sum_probs=31.3

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      +-+.|+|+|..||||||+++.||+.++.+++..|.
T Consensus         5 ~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~   39 (542)
T PRK14021          5 RRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADV   39 (542)
T ss_pred             CCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchH
Confidence            34568999999999999999999999999988885

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=97.36  E-value=0.0002  Score=63.24  Aligned_cols=34  Identities=26%  Similarity=0.395  Sum_probs=30.6

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      +.+|+|+|+.||||||+++.|+..++..++++|.
T Consensus         6 ~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~   39 (204)
T PRK14733          6 TYPIGITGGIASGKSTATRILKEKLNLNVVCADT   39 (204)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccH
Confidence            4689999999999999999999888888888875

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=97.34  E-value=0.00012  Score=64.63  Aligned_cols=24  Identities=33%  Similarity=0.403  Sum_probs=21.8

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhh
Q psy8556          37 KTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      +++++|+||||||||||++.|+..
T Consensus        28 ~~~~~i~G~NGsGKSTll~~i~~~   51 (213)
T cd03279          28 NGLFLICGPTGAGKSTILDAITYA   51 (213)
T ss_pred             cCEEEEECCCCCCHHHHHHHheee
Confidence            679999999999999999999743

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.34  E-value=0.00022  Score=69.43  Aligned_cols=26  Identities=27%  Similarity=0.441  Sum_probs=23.9

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      .++.+++++||||+||||++..||..
T Consensus       189 ~~g~vi~lvGpnG~GKTTtlakLA~~  214 (420)
T PRK14721        189 EQGGVYALIGPTGVGKTTTTAKLAAR  214 (420)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            56889999999999999999999875

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=97.34  E-value=0.00028  Score=68.56  Aligned_cols=71  Identities=14%  Similarity=0.236  Sum_probs=48.9

Q ss_pred             ChHHHHhhhcccCchhhhhhccccc------cccc-----cccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCc
Q psy8556           3 DVKDVLDRDTETDPQQRQLTADFRR------IRTG-----KLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSA   71 (298)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-----~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~   71 (298)
                      .|++++..-.++.-+|..-...++-      .+..     .....|.-|.++||+|||||++++.||+.++.+++..|..
T Consensus         2 tP~~I~~~Ld~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat   81 (441)
T TIGR00390         2 TPREIVAELDKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEAT   81 (441)
T ss_pred             CHHHHHHHHhhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecc
Confidence            4777777777777666543333221      1111     1112345689999999999999999999999999888865


Q ss_pred             eE
Q psy8556          72 LV   73 (298)
Q Consensus        72 qv   73 (298)
                      .+
T Consensus        82 ~~   83 (441)
T TIGR00390        82 KF   83 (441)
T ss_pred             ee
Confidence            44

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>KOG0064|consensus

Probab=97.34  E-value=0.00012  Score=72.31  Aligned_cols=41  Identities=29%  Similarity=0.424  Sum_probs=31.9

Q ss_pred             chhhhhhccccc-cccccccCCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          16 PQQRQLTADFRR-IRTGKLLFRKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        16 ~~~~~~~~~~~~-~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      |-+.-++..|.+ +.+|++      +.|+||||||||+|.+.|+++.+
T Consensus       492 P~~~vvv~~Ltf~i~~G~h------LLItGPNGCGKSSLfRILggLWP  533 (728)
T KOG0064|consen  492 PAGDVLVPKLTFQIEPGMH------LLITGPNGCGKSSLFRILGGLWP  533 (728)
T ss_pred             cCcceeecceeEEecCCce------EEEECCCCccHHHHHHHHhccCc
Confidence            444445555666 655654      89999999999999999999877

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.34  E-value=0.00019  Score=61.74  Aligned_cols=27  Identities=19%  Similarity=0.159  Sum_probs=24.1

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      .+.+++|+|++|||||||+..|...+.
T Consensus         5 ~~~ii~ivG~sgsGKTTLi~~li~~l~   31 (173)
T PRK10751          5 MIPLLAIAAWSGTGKTTLLKKLIPALC   31 (173)
T ss_pred             CceEEEEECCCCChHHHHHHHHHHHHh
Confidence            456999999999999999999998775

>PRK00279 adk adenylate kinase; Reviewed

Probab=97.32  E-value=0.00023  Score=62.96  Aligned_cols=32  Identities=31%  Similarity=0.421  Sum_probs=28.7

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          39 KVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      .|+|+||+||||||+++.||..++...++.+.
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~d   33 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTGD   33 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEECCc
Confidence            48899999999999999999999988887654

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=97.31  E-value=0.00017  Score=63.10  Aligned_cols=25  Identities=28%  Similarity=0.263  Sum_probs=22.5

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHh
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISE   59 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~   59 (298)
                      .++++++|+||||||||||++.++.
T Consensus        27 ~~~~~~~l~G~Ng~GKStll~~i~~   51 (202)
T cd03243          27 GSGRLLLITGPNMGGKSTYLRSIGL   51 (202)
T ss_pred             cCCeEEEEECCCCCccHHHHHHHHH
Confidence            3468999999999999999999984

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>PRK00023 cmk cytidylate kinase; Provisional

Probab=97.30  E-value=0.00017  Score=64.50  Aligned_cols=38  Identities=29%  Similarity=0.456  Sum_probs=31.6

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEecc
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCD   76 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g   76 (298)
                      +.+|+|.||+||||||+++.|++.++...+  |++.+|+.
T Consensus         4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~--~~~~~~r~   41 (225)
T PRK00023          4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYL--DTGAMYRA   41 (225)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCCcc--cCchhHHH
Confidence            578999999999999999999999986664  55557654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	298
3foz_A	316	Structure Of E. Coli Isopentenyl-Trna Transferase I		2e-49
3crm_A	323	Structure Of Trna Dimethylallyltransferase: Rna Mod		3e-47
2zm5_A	316	Crystal Structure Of Trna Modification Enzyme Miaa		4e-46
2qgn_A	322	Crystal Structure Of Trna Isopentenylpyrophosphate		1e-26
3d3q_A	340	Crystal Structure Of Trna Delta(2)-Isopentenylpyrop		2e-16
3eph_A	409	Crystallographic Snapshots Of Eukaryotic Dimethylal		2e-15
3a8t_A	339	Plant Adenylate Isopentenyltransferase In Complex W		2e-09

>pdb|3FOZ|A Chain A, Structure Of E. Coli Isopentenyl-Trna Transferase In Complex With E. Coli Trna(Phe) Length = 316

Iteration: 1
 Score =  192 bits (488), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 98/275 (35%), Positives = 154/275 (56%), Gaps = 45/275 (16%)
Query: 42  ILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIE 101
           ++GPTASGK+++A+++ + +P E+IS+DSAL+Y  MDIGT KP+  E    PH L+DI +
Sbjct: 15  LMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLLDIRD 74
Query: 102 PTKSYSVIQFCEDALFSIKNIXXXXXXXXXVGGTMLYFKALRDGINKLPPANLKLRTKFN 161
           P+++YS   F  DAL  + +I         VGGTMLYFKAL +G++ LP A+ ++R +  
Sbjct: 75  PSQAYSAADFRRDALAEMADITAAGRIPLLVGGTMLYFKALLEGLSPLPSADPEVRARIE 134
Query: 162 IDINKYGISFLYDKLKLLDPVTANQ----------------------------------- 186
               + G   L+ +L+ +DPV A +                                   
Sbjct: 135 QQAAEQGWESLHRQLQEVDPVAAARIHPNDPQRLSRALEVFFISGKTLTELTQTSGDALP 194
Query: 187 ---------PSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCIGYRQ 237
                    P++R +LH+RI  RF +ML       EV+ +  + +L+ +LPS++C+GYRQ
Sbjct: 195 YQVHQFAIAPASRELLHQRIEQRFHQMLASGFE-AEVRALFARGDLHTDLPSIRCVGYRQ 253
Query: 238 TWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRN 272
            W Y++G I  + +  + + ATRQLAK+Q+TWLR 
Sbjct: 254 MWSYLEGEISYDEMVYRGVCATRQLAKRQITWLRG 288

>pdb|3CRM|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna Modification Through A Channel Length = 323

Iteration: 1
 Score =  185 bits (469), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 107/314 (34%), Positives = 165/314 (52%), Gaps = 62/314 (19%)
Query: 42  ILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREI---TPHHLID 98
           ++GPTA+GK+ +A+ +++ +PCE+IS+DSAL+Y  MDIGT KPS   RE+    PH LID
Sbjct: 10  LMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPS---RELLARYPHRLID 66
Query: 99  IIEPTKSYSVIQFCEDALFSIKNIXXXXXXXXXVGGTMLYFKALRDGINKLPPANLKLRT 158
           I +P +SYS  +F  DAL ++            VGGTMLY+KAL +G+  +P A+ ++R 
Sbjct: 67  IRDPAESYSAAEFRADALAAMAKATARGRIPLLVGGTMLYYKALLEGLADMPGADPEVRA 126
Query: 159 KFNIDINKYGISFLYDKLKLLDPVTA-----NQP-------------------------- 187
               +    G   L+ +L  +DP +A     N P                          
Sbjct: 127 AIEAEAQAEGWEALHRQLAEVDPESAARIHPNDPQRLMRALEVYRLGGVSMSDLRRRQSA 186
Query: 188 ------------------------SNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNL 223
                                     R +LH RI+ RF++ML+Q   I EV+ +  + +L
Sbjct: 187 EKADFDASGRNQLPYTVAQLAIAPEQRQVLHARIAQRFRQMLEQG-FIAEVEALHARSDL 245
Query: 224 NLNLPSMKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLE 283
           +  LPS++ +GYRQ W+Y+DG +    + E+ IIATRQLAK+Q TWLR+ +    +D L 
Sbjct: 246 HAGLPSIRAVGYRQVWDYLDGKLSYAEMTERGIIATRQLAKRQFTWLRSWSHLHWMDSLA 305
Query: 284 KNCVQKILNLIKDI 297
            + + + L  +K +
Sbjct: 306 GDNLPRALRYLKTV 319

>pdb|2ZM5|A Chain A, Crystal Structure Of Trna Modification Enzyme Miaa In The Complex With Trna(Phe) Length = 316

Iteration: 1
 Score =  181 bits (459), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 95/277 (34%), Positives = 148/277 (53%), Gaps = 45/277 (16%)
Query: 42  ILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIE 101
           + GPTASGK+++A+++ + +P E+IS+DSAL+Y   DIGT KP+  E    PH L+DI +
Sbjct: 15  LXGPTASGKTALAIELRKILPVELISVDSALIYKGXDIGTAKPNAEELLAAPHRLLDIRD 74
Query: 102 PTKSYSVIQFCEDALFSIKNIXXXXXXXXXVGGTMLYFKALRDGINKLPPANLKLRTKFN 161
           P+++YS   F  DAL    +I         VGGT LYFKAL +G++ LP A+ ++R +  
Sbjct: 75  PSQAYSAADFRRDALAEXADITAAGRIPLLVGGTXLYFKALLEGLSPLPSADPEVRARIE 134
Query: 162 IDINKYGISFLYDKLKLLDPVTANQ----------------------------------- 186
               + G   L+ +L+ +DPV A +                                   
Sbjct: 135 QQAAEQGWESLHRQLQEVDPVAAARIHPNDPQRLSRALEVFFISGKTLTELTQTSGDALP 194
Query: 187 ---------PSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCIGYRQ 237
                    P++R +LH+RI  RF + L       EV+ +  + +L+ +LPS++C+GYRQ
Sbjct: 195 YQVHQFAIAPASRELLHQRIEQRFHQXLASGFE-AEVRALFARGDLHTDLPSIRCVGYRQ 253
Query: 238 TWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMN 274
            W Y++G I  +    + + ATRQLAK+Q+TWLR   
Sbjct: 254 XWSYLEGEISYDEXVYRGVCATRQLAKRQITWLRGWE 290

>pdb|2QGN|A Chain A, Crystal Structure Of Trna Isopentenylpyrophosphate Transferase (Bh2366) From Bacillus Halodurans, Northeast Structural Genomics Consortium Target Bhr41. Length = 322

Iteration: 1
 Score =  116 bits (291), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/282 (31%), Positives = 135/282 (47%), Gaps = 56/282 (19%)
Query: 40  VAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDI 99
           VAI+GPTA GK+  ++ +++ +  E+IS DS  VY   DIGT K +  E +  PHHLIDI
Sbjct: 6   VAIVGPTAVGKTKTSVXLAKRLNGEVISGDSXQVYRGXDIGTAKITAEEXDGVPHHLIDI 65
Query: 100 IEPTKSYSVIQFCEDALFSIKNIXXXXXXXXXVGGTMLYFKALRDGINKLP-PANLKLRT 158
            +P++S+SV  F + A   I  I         VGGT LY  A+    N     A+   R 
Sbjct: 66  KDPSESFSVADFQDLATPLITEIHERGRLPFLVGGTGLYVNAVIHQFNLGDIRADEDYRH 125
Query: 159 KFNIDINKYGISFLYDKLKLLDP--VTANQPSN--------------------------- 189
           +    +N YG+  L+DKL  +DP    A  P+N                           
Sbjct: 126 ELEAFVNSYGVQALHDKLSKIDPKAAAAIHPNNYRRVIRALEIIKLTGKTVTEQARHEEE 185
Query: 190 ---------------RHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCIG 234
                          R +L+ RI+ R  + +++  LI+E KK+  +   +    S++ IG
Sbjct: 186 TPSPYNLVXIGLTXERDVLYDRINRRVDQXVEEG-LIDEAKKLYDRGIRDCQ--SVQAIG 242
Query: 235 YRQTWEYIDGLIDR----NTLKEKSIIATRQLAKQQLTWLRN 272
           Y++ ++Y+DG +      +TLK  S    R+ AK+QLTW RN
Sbjct: 243 YKEXYDYLDGNVTLEEAIDTLKRNS----RRYAKRQLTWFRN 280

>pdb|3D3Q|A Chain A, Crystal Structure Of Trna Delta(2)-Isopentenylpyrophosphate Transferase (Se0981) From Staphylococcus Epidermidis. Northeast Structural Genomics Consortium Target Ser100 Length = 340

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/281 (29%), Positives = 119/281 (42%), Gaps = 52/281 (18%)
Query: 40  VAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDI 99
           + I+GPTASGK+ +++++++    EIIS DS  VY   DIGT K +  E E  PH+ IDI
Sbjct: 10  IVIVGPTASGKTELSIEVAKKFNGEIISGDSXQVYQGXDIGTAKVTTEEXEGIPHYXIDI 69
Query: 100 IEPTKSYSVIQFCEDALFSIKNIXXXXXXXXXVGGT------MLYFKALRD--------- 144
           + P  S+S  +F + A   IK+I          GGT      +LY  A  D         
Sbjct: 70  LPPDASFSAYEFKKRAEKYIKDITRRGKVPIIAGGTGLYIQSLLYNYAFEDESISEDKXK 129
Query: 145 ------------GINKLPP--ANLKLRTKFNIDINKY-----GISFLYDKLKLL------ 179
                         NKL    A+    +  +I  N        I +     KLL      
Sbjct: 130 QVKLKLKELEHLNNNKLHEYLASFDKESAKDIHPNNRKRVLRAIEYYLKTKKLLSSRKKV 189
Query: 180 -------DPVTANQPSNRHILHKRISDRFKKMLDQDLLINEVKK-IRKKWNLNLNLPSMK 231
                  D +      +R  L+ RI+ R    L   L  NEV+  + + +  +    S +
Sbjct: 190 QQFTENYDTLLIGIEXSRETLYLRINKRVDIXLGHGLF-NEVQHLVEQGFEAS---QSXQ 245
Query: 232 CIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRN 272
            IGY++    I G I      EK    +RQ AK+QLTW +N
Sbjct: 246 AIGYKELVPVIKGNISXENAVEKLKQHSRQYAKRQLTWFKN 286

>pdb|3EPH|A Chain A, Crystallographic Snapshots Of Eukaryotic Dimethylallyltransferase Acting On Trna: Insight Into Trna Recognition And Reaction Mechanism Length = 409

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 127/289 (43%), Gaps = 57/289 (19%)
Query: 40  VAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDI 99
           + I G T  GKS +++++++    E+I+ DS  VY D+ I TNK  + ERE  PHH+++ 
Sbjct: 5   IVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNH 64
Query: 100 IEPTKSYSVIQFCEDALFSIKNIXXXXXXXXXVGGTMLYFKALRDGINKLPPANLKLRTK 159
           ++ ++ Y   +F  + + +I++I         VGGT  Y + L +       +  KL T+
Sbjct: 65  VDWSEEYYSHRFETECMNAIEDIHRRGKIPIVVGGTHYYLQTLFNKRVDTKSSERKL-TR 123
Query: 160 FNIDI-NKYGISFLYDKLKLLDP----------------------VTANQPSNR------ 190
             +DI        +Y+ L   DP                       T  +PS        
Sbjct: 124 KQLDILESTDPDVIYNTLVKCDPDIATKYHPNDYRRVQRMLEIYYKTGKKPSETFNEQKI 183
Query: 191 ---------------HILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSM----- 230
                            L +R+ DR   ML++  L  E+K++ + ++ N   P       
Sbjct: 184 TLKFDTLFLWLYSKPEPLFQRLDDRVDDMLERGAL-QEIKQLYEYYSQNKFTPEQCENGV 242
Query: 231 -KCIGYRQTWEYIDGLIDRNTLK-----EKSIIATRQLAKQQLTWLRNM 273
            + IG+++   ++ G  D NT+K     E+    TRQ AK+Q+ W++ M
Sbjct: 243 WQVIGFKEFLPWLTGKTDDNTVKLEDCIERMKTRTRQYAKRQVKWIKKM 291

>pdb|3A8T|A Chain A, Plant Adenylate Isopentenyltransferase In Complex With Atp Length = 339

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 36  RKTKVAIL-GPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPH 94
           RK K+ +L G T +GKS +++ ++ + P E+I+ D   VY  +DI TNK S+ +R   PH
Sbjct: 38  RKEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPH 97
Query: 95  HLIDIIEPTKS-YSVIQFCEDALFSIKNIXXXXXXXXXVGGTMLYFKAL 142
           HL+  ++P +   +   F   A  ++  I         VGG+  +  AL
Sbjct: 98  HLLGEVDPARGELTPADFRSLAGKAVSEITGRRKLPVLVGGSNSFIHAL 146

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	298
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	1e-108
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	1e-108
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	3e-97
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	4e-90
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	9e-89
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	7e-73
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	8e-54
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	8e-04

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A Length = 316

 Score =  316 bits (812), Expect = e-108
 Identities = 104/307 (33%), Positives = 169/307 (55%), Gaps = 46/307 (14%)

Query: 36  RKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHH 95
               + ++GPTASGK+++A+++ + +P E+IS+DSAL+Y  MDIGT KP+  E    PH 
Sbjct: 9   LPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHR 68

Query: 96  LIDIIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLK 155
           L+DI +P+++YS   F  DAL  + +I    ++PLLVGGTMLYFKAL +G++ LP A+ +
Sbjct: 69  LLDIRDPSQAYSAADFRRDALAEMADITAAGRIPLLVGGTMLYFKALLEGLSPLPSADPE 128

Query: 156 LRTKFNIDINKYGISFLYDKLKLLDPVTANQ----------------------------- 186
           +R +      + G   L+ +L+ +DPV A +                             
Sbjct: 129 VRARIEQQAAEQGWESLHRQLQEVDPVAAARIHPNDPQRLSRALEVFFISGKTLTELTQT 188

Query: 187 ---------------PSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMK 231
                          P++R +LH+RI  RF +ML       EV+ +  + +L+ +LPS++
Sbjct: 189 SGDALPYQVHQFAIAPASRELLHQRIEQRFHQMLASGFE-AEVRALFARGDLHTDLPSIR 247

Query: 232 CIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCV-QKI 290
           C+GYRQ W Y++G I  + +  + + ATRQLAK+Q+TWLR       +D  +      ++
Sbjct: 248 CVGYRQMWSYLEGEISYDEMVYRGVCATRQLAKRQITWLRGWEGVHWLDSEKPEQARDEV 307

Query: 291 LNLIKDI 297
           L ++  I
Sbjct: 308 LQVVGAI 314

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A Length = 323

 Score =  316 bits (812), Expect = e-108
 Identities = 105/313 (33%), Positives = 168/313 (53%), Gaps = 56/313 (17%)

Query: 40  VAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDI 99
           + ++GPTA+GK+ +A+ +++ +PCE+IS+DSAL+Y  MDIGT KPS       PH LIDI
Sbjct: 8   IFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSRELLARYPHRLIDI 67

Query: 100 IEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTK 159
            +P +SYS  +F  DAL ++     + ++PLLVGGTMLY+KAL +G+  +P A+ ++R  
Sbjct: 68  RDPAESYSAAEFRADALAAMAKATARGRIPLLVGGTMLYYKALLEGLADMPGADPEVRAA 127

Query: 160 FNIDINKYGISFLYDKLKLLD---------------------------PVTANQ------ 186
              +    G   L+ +L  +D                            ++  +      
Sbjct: 128 IEAEAQAEGWEALHRQLAEVDPESAARIHPNDPQRLMRALEVYRLGGVSMSDLRRRQSAE 187

Query: 187 ----------------------PSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLN 224
                                 P  R +LH RI+ RF++ML+Q   I EV+ +  + +L+
Sbjct: 188 KADFDASGRNQLPYTVAQLAIAPEQRQVLHARIAQRFRQMLEQGF-IAEVEALHARSDLH 246

Query: 225 LNLPSMKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEK 284
             LPS++ +GYRQ W+Y+DG +    + E+ IIATRQLAK+Q TWLR+ +    +D L  
Sbjct: 247 AGLPSIRAVGYRQVWDYLDGKLSYAEMTERGIIATRQLAKRQFTWLRSWSHLHWMDSLAG 306

Query: 285 NCVQKILNLIKDI 297
           + + + L  +K +
Sbjct: 307 DNLPRALRYLKTV 319

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A Length = 322

 Score =  288 bits (739), Expect = 3e-97
 Identities = 94/307 (30%), Positives = 151/307 (49%), Gaps = 49/307 (15%)

Query: 37  KTKV-AILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHH 95
           K K+ AI+GPTA GK+  ++ +++ +  E+IS DS  VY  MDIGT K +  E +  PHH
Sbjct: 2   KEKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHH 61

Query: 96  LIDIIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLP-PANL 154
           LIDI +P++S+SV  F + A   I  I ++ +LP LVGGT LY  A+    N     A+ 
Sbjct: 62  LIDIKDPSESFSVADFQDLATPLITEIHERGRLPFLVGGTGLYVNAVIHQFNLGDIRADE 121

Query: 155 KLRTKFNIDINKYGISFLYDKLKLLDPVTANQ--PSN----------------------- 189
             R +    +N YG+  L+DKL  +DP  A    P+N                       
Sbjct: 122 DYRHELEAFVNSYGVQALHDKLSKIDPKAAAAIHPNNYRRVIRALEIIKLTGKTVTEQAR 181

Query: 190 -------------------RHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSM 230
                              R +L+ RI+ R  +M+++ L+ +E KK+  +     +  S+
Sbjct: 182 HEEETPSPYNLVMIGLTMERDVLYDRINRRVDQMVEEGLI-DEAKKLYDRG--IRDCQSV 238

Query: 231 KCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQKI 290
           + IGY++ ++Y+DG +      +     +R+ AK+QLTW RN       D  + +  +KI
Sbjct: 239 QAIGYKEMYDYLDGNVTLEEAIDTLKRNSRRYAKRQLTWFRNKANVTWFDMTDVDFDKKI 298

Query: 291 LNLIKDI 297
           + +   I
Sbjct: 299 MEIHNFI 305

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} Length = 340

 Score =  270 bits (694), Expect = 4e-90
 Identities = 86/308 (27%), Positives = 141/308 (45%), Gaps = 51/308 (16%)

Query: 36  RKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHH 95
           +   + I+GPTASGK+ +++++++    EIIS DS  VY  MDIGT K +  E E  PH+
Sbjct: 6   KPFLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHY 65

Query: 96  LIDIIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGIN---KLPPA 152
           +IDI+ P  S+S  +F + A   IK+I ++ K+P++ GGT LY ++L        +    
Sbjct: 66  MIDILPPDASFSAYEFKKRAEKYIKDITRRGKVPIIAGGTGLYIQSLLYNYAFEDESISE 125

Query: 153 NLKLRTKFNI-DINKYGISFLYDKLKLLDPVTANQ--PSN-------------------- 189
           +   + K  + ++     + L++ L   D  +A    P+N                    
Sbjct: 126 DKMKQVKLKLKELEHLNNNKLHEYLASFDKESAKDIHPNNRKRVLRAIEYYLKTKKLLSS 185

Query: 190 ---------------------RHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLP 228
                                R  L+ RI+ R   ML    L NEV+ + ++        
Sbjct: 186 RKKVQQFTENYDTLLIGIEMSRETLYLRINKRVDIMLGHG-LFNEVQHLVEQG--FEASQ 242

Query: 229 SMKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQ 288
           SM+ IGY++    I G I      EK    +RQ AK+QLTW +N      ++  E+  +Q
Sbjct: 243 SMQAIGYKELVPVIKGNISMENAVEKLKQHSRQYAKRQLTWFKNKMNVHWLN-KERMSLQ 301

Query: 289 KILNLIKD 296
            +L+ I  
Sbjct: 302 MMLDEITT 309

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* Length = 409

 Score =  269 bits (690), Expect = 9e-89
 Identities = 70/288 (24%), Positives = 132/288 (45%), Gaps = 55/288 (19%)

Query: 40  VAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDI 99
           + I G T  GKS +++++++    E+I+ DS  VY D+ I TNK  + ERE  PHH+++ 
Sbjct: 5   IVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNH 64

Query: 100 IEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTK 159
           ++ ++ Y   +F  + + +I++I ++ K+P++VGGT  Y + L +       +  KL  K
Sbjct: 65  VDWSEEYYSHRFETECMNAIEDIHRRGKIPIVVGGTHYYLQTLFNKRVDTKSSERKLTRK 124

Query: 160 FNIDINKYGISFLYDKLKLLDPVTANQ--PSN---------------------------- 189
               +       +Y+ L   DP  A +  P++                            
Sbjct: 125 QLDILESTDPDVIYNTLVKCDPDIATKYHPNDYRRVQRMLEIYYKTGKKPSETFNEQKIT 184

Query: 190 -------------RHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLP------SM 230
                           L +R+ DR   ML++   + E+K++ + ++ N   P        
Sbjct: 185 LKFDTLFLWLYSKPEPLFQRLDDRVDDMLERG-ALQEIKQLYEYYSQNKFTPEQCENGVW 243

Query: 231 KCIGYRQTWEYIDGLIDRNTLK-----EKSIIATRQLAKQQLTWLRNM 273
           + IG+++   ++ G  D NT+K     E+    TRQ AK+Q+ W++ M
Sbjct: 244 QVIGFKEFLPWLTGKTDDNTVKLEDCIERMKTRTRQYAKRQVKWIKKM 291

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} Length = 339

 Score =  226 bits (578), Expect = 7e-73
 Identities = 57/263 (21%), Positives = 109/263 (41%), Gaps = 36/263 (13%)

Query: 36  RKTKV-AILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPH 94
           RK K+  ++G T +GKS +++ ++ + P E+I+ D   VY  +DI TNK S+ +R   PH
Sbjct: 38  RKEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPH 97

Query: 95  HLIDIIEPT-KSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPAN 153
           HL+  ++P     +   F   A  ++  I  ++KLP+LVGG+  +  AL     +   + 
Sbjct: 98  HLLGEVDPARGELTPADFRSLAGKAVSEITGRRKLPVLVGGSNSFIHALLVD--RFDSSG 155

Query: 154 LKLRTKFNIDINKYGISFLYDKLKLLDPVTANQPSNRHILHKRISDRFKKMLDQDLLINE 213
             +  + +  +    +   YD   L   V      +  +L   ++ R   ML+  +  +E
Sbjct: 156 PGVFEEGSHSVVSSEL--RYDCCFLWVDV------SVKVLTDYLAKRVDDMLELGMF-DE 206

Query: 214 VKKIRKKWNLNLNLPS------MKCIGYRQTWEYIDGLIDRNTLK--------------- 252
           + +     + + +  S       K IG  +   Y +     +                  
Sbjct: 207 LAEFYSPEDEDHDEDSATRTGLRKAIGVPEFDRYFEKFRPGDVEGEDPGRDRVRRGAFEE 266

Query: 253 --EKSIIATRQLAKQQLTWLRNM 273
                   T  LAK+Q+  +  +
Sbjct: 267 AVRAIKENTCHLAKRQIGKILRL 289

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A Length = 253

 Score =  175 bits (444), Expect = 8e-54
 Identities = 27/154 (17%), Positives = 59/154 (38%), Gaps = 4/154 (2%)

Query: 40  VAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDI 99
             I GPT SGK+ +A++I++     ++++D       +  G+ +P   E + T    +D 
Sbjct: 4   HLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDS 63

Query: 100 IEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTK 159
              T+     +     L    +  K ++  +L GG++       + + K P      +  
Sbjct: 64  RPLTEGILDAESAHRRLIFEVDWRKSEEGLILEGGSISLL----NCMAKSPFWRSGFQWH 119

Query: 160 FNIDINKYGISFLYDKLKLLDPVTANQPSNRHIL 193
                     +FL    + +  + A +     +L
Sbjct: 120 VKRLRLGDSDAFLTRAKQRVAEMFAIREDRPSLL 153

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.6 bits (138), Expect = 2e-09
 Identities = 62/342 (18%), Positives = 100/342 (29%), Gaps = 98/342 (28%)

Query: 3   DVKDVLDRDTET-DPQQRQLTADFRRIRTGKLLFRKTK-VAILGPTASGKSSVAL----- 55
           + +D L  D +            + ++R   L  R  K V I G   SGK+ VAL     
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173

Query: 56  -KISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLID---IIEPTKSYSVIQF 111
            K+   +  +I  ++                ++E      + ID         S ++   
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPET-------VLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226

Query: 112 CEDALFSIKNILKKKKLP--LLVGGTMLYFKALRDGINKLPPANLKLRTKFNIDINKYGI 169
                  ++ +LK K     LLV         L + +      N K    FN+       
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLV---------LLN-VQ-----NAKAWNAFNL------- 264

Query: 170 SFLYDKLKLLDPVT------ANQPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNL 223
                  K+L  +T       +  S     H  +       L  D    EVK +  K+ L
Sbjct: 265 -----SCKIL--LTTRFKQVTDFLSAATTTHISLDH-HSMTLTPD----EVKSLLLKY-L 311

Query: 224 NLN---LPSMKC---------IG-----YRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQ 266
           +     LP             I         TW+        N  K  +II +  L   +
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK---HVNCDKLTTIIES-SLNVLE 367

Query: 267 LTWLRNM---------NEKITIDCLE-------KNCVQKILN 292
               R M         +  I    L        K+ V  ++N
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 2e-06
 Identities = 52/325 (16%), Positives = 90/325 (27%), Gaps = 99/325 (30%)

Query: 2   RD--VKDVLDRDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISE 59
           R   V D L   T T       +         K L  K     L           L  + 
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTP-DEVKSLLLK----YLDCRPQDLPREVLTTN- 326

Query: 60  YIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQFCEDALFSI 119
             P   +SI +  +        +  +  +     H   D     K  ++I+   + L   
Sbjct: 327 --PR-RLSIIAESI-------RDGLATWDN--WKHVNCD-----KLTTIIESSLNVLEP- 368

Query: 120 KNILKKKKLPLLVGGTMLYFKAL---RDGINKLPPANL-----------------KLRTK 159
               +K             F  L       + +P   L                 KL   
Sbjct: 369 -AEYRK------------MFDRLSVFPPSAH-IPTILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 160 FNIDIN----KYGISFLYDKLKLLDPVTANQPSNRHILHKRISDRFKKMLDQDLLINEVK 215
             ++         I  +Y +LK+       +  N + LH+ I D +              
Sbjct: 415 SLVEKQPKESTISIPSIYLELKV-------KLENEYALHRSIVDHYN------------- 454

Query: 216 KIRKKWNLNLNLPSMKCIGYRQTW-EYIDG--LIDRNTLKEKSIIATRQLAKQQLTWLRN 272
            I K ++ + +L       Y   +  +I G  L  +N    + +   R +      +L  
Sbjct: 455 -IPKTFDSD-DLIPPYLDQY---FYSHI-GHHL--KNIEHPERMTLFRMVF-LDFRFLEQ 505

Query: 273 MNEKITIDCLEKNCVQKILNLIKDI 297
              KI  D    N    ILN ++ +
Sbjct: 506 ---KIRHDSTAWNASGSILNTLQQL 527

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 1e-05
 Identities = 40/242 (16%), Positives = 76/242 (31%), Gaps = 60/242 (24%)

Query: 77  MDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQFCEDALFSIKNILKKK------KLPL 130
           MD  T +     ++I        ++          C+D     K+IL K+          
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDNFD-------CKDVQDMPKSILSKEEIDHIIMSKD 59

Query: 131 LVGGTMLYFKALRDGINKLPPANLKLRTKFNIDINKYGISFLYDKLKLLDPVTANQPSNR 190
            V GT+  F  L            ++  KF  ++ +    FL   +K        QPS  
Sbjct: 60  AVSGTLRLFWTLLS-------KQEEMVQKFVEEVLRINYKFLMSPIK----TEQRQPSMM 108

Query: 191 HILHKRISDR-------FKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCIGYRQTWEYID 243
             ++    DR       F K          V +++    L   L  ++          ID
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKY--------NVSRLQPYLKLRQALLELR----PAKNVLID 156

Query: 244 GLIDRNTLKEKSIIATRQLAKQQLT--------WLRNMNEKITIDCLEKNCVQKILNLIK 295
           G++       K+ +A       ++         WL N+    + + +    ++ +  L+ 
Sbjct: 157 GVLGSG----KTWVALDVCLSYKVQCKMDFKIFWL-NLKNCNSPETV----LEMLQKLLY 207

Query: 296 DI 297
            I
Sbjct: 208 QI 209

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 Length = 201

 Score = 38.9 bits (91), Expect = 8e-04
 Identities = 17/121 (14%), Positives = 38/121 (31%), Gaps = 19/121 (15%)

Query: 40  VAILGPTASGKSSVALKISEYI-----PCEIISIDSALVYCDMDIGTNKPSIIEREITP- 93
           + I G + SGK+++A ++S+ +        +  +D      +     +  +    E    
Sbjct: 25  LGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD--HIVERAKRYHTGNEEWFEYYYL 82

Query: 94  --------HHLIDIIEPTKS--YSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALR 143
                   H L   ++ +            D        L    + +++ G  L  K  R
Sbjct: 83  QWDVEWLTHQLFRQLKASHQLTLPFYDHETDTHSKRTVYLSDSDM-IMIEGVFLQRKEWR 141

Query: 144 D 144
            
Sbjct: 142 P 142

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	298
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	100.0
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	100.0
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	100.0
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	100.0
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	100.0
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	100.0
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	99.96
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	99.14
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	98.98
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.98
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	98.91
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	98.91
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	98.9
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	98.88
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	98.87
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	98.87
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	98.87
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	98.84
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	98.84
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	98.82
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	98.81
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.79
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	98.79
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	98.79
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	98.78
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	98.77
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.75
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	98.73
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	98.72
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	98.71
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	98.68
1sgw_A	214	Putative ABC transporter; structural genomics, P p	98.67
1ji0_A	240	ABC transporter; ATP binding protein, structural g	98.66
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	98.65
1g6h_A	257	High-affinity branched-chain amino acid transport	98.64
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.62
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.62
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	98.61
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	98.56
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.56
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	98.56
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	98.54
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	98.54
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	98.53
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.52
1b0u_A	262	Histidine permease; ABC transporter, transport pro	98.51
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	98.5
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	98.47
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	98.44
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	98.44
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	98.42
2ghi_A	260	Transport protein; multidrug resistance protein, M	98.38
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	98.38
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.34
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	98.33
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	98.32
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	98.32
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	98.3
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.3
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	98.25
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	98.25
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.24
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.23
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	98.23
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.22
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.22
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.2
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.2
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	98.19
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.18
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.17
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.17
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	98.15
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	98.14
2eyu_A	261	Twitching motility protein PILT; pilus retraction	98.12
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	98.1
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	98.1
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	98.09
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	98.09
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	98.08
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	98.07
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.07
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	98.06
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.06
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.05
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	98.04
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.04
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	98.02
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	98.01
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.0
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.99
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	97.99
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.99
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.98
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.98
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	97.98
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.98
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	97.97
2og2_A	359	Putative signal recognition particle receptor; nuc	97.97
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	97.96
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.96
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.96
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.95
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	97.95
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.95
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.95
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.95
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.94
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.93
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.93
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.92
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.92
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.92
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.91
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.91
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	97.9
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.89
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	97.89
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.89
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.88
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	97.87
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	97.87
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	97.86
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	97.86
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	97.86
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.85
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	97.85
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	97.85
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	97.84
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	97.84
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.84
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.83
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.83
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.83
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	97.82
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	97.81
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.81
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.8
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.8
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	97.8
1via_A	175	Shikimate kinase; structural genomics, transferase	97.8
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.79
1p9r_A	418	General secretion pathway protein E; bacterial typ	97.79
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	97.79
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.79
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.79
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.78
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.77
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.77
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	97.76
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	97.76
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.75
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.75
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	97.74
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	97.73
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	97.73
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.72
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.72
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	97.72
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.71
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	97.71
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	97.7
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.69
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.69
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.68
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.68
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.67
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	97.67
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.67
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	97.66
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.66
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	97.65
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.62
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.61
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.61
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	97.61
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	97.6
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	97.59
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	97.57
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.57
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	97.56
3kta_A	182	Chromosome segregation protein SMC; structural mai	97.55
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	97.55
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.54
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	97.54
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.54
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	97.53
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.51
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.51
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.5
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.49
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.48
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.47
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.46
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.45
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.44
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.43
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	97.42
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	97.42
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	97.41
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.41
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.4
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	97.39
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.38
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.37
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.36
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	97.36
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	97.34
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.33
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	97.31
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.3
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.27
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.27
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.26
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.24
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.23
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.22
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.21
3bos_A	242	Putative DNA replication factor; P-loop containing	97.2
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.19
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.17
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.16
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	97.1
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	97.09
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	97.09
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	97.09
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	97.08
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	97.07
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.06
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	97.06
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	97.03
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	97.03
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.01
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	97.0
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	97.0
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.98
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	96.97
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.97
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	96.95
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	96.92
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.92
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	96.92
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	96.91
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.89
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.88
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	96.88
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.87
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.86
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.85
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.84
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	96.84
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	96.84
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	96.84
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	96.83
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	96.83
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	96.82
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	96.81
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.8
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.79
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	96.78
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	96.75
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.74
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.72
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	96.71
3pvs_A	447	Replication-associated recombination protein A; ma	96.71
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	96.69
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	96.68
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.67
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.65
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	96.65
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	96.64
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	96.62
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.61
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	96.6
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.59
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.59
2wji_A	165	Ferrous iron transport protein B homolog; membrane	96.58
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	96.57
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	96.56
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.54
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.54
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	96.54
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	96.54
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.52
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.52
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	96.52
1e69_A	322	Chromosome segregation SMC protein; structural mai	96.52
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.51
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.51
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.51
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	96.51
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	96.5
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	96.49
2r44_A	331	Uncharacterized protein; putative ATPase, structur	96.48
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	96.47
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	96.46
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	96.45
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	96.45
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	96.43
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	96.41
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	96.4
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	96.39
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.39
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	96.38
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.38
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	96.37
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.37
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	96.37
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	96.36
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	96.35
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	96.35
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.35
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	96.35
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.34
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	96.33
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	96.32
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	96.31
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	96.29
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	96.28
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.28
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	96.28
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	96.27
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	96.27
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	96.25
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	96.22
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.2
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	96.2
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	96.19
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	96.18
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.18
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	96.17
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	96.11
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	96.09
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	96.06
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	96.05
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.05
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	96.01
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	95.97
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	95.97
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	95.96
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	95.96
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	95.96
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	95.95
3co5_A	143	Putative two-component system transcriptional RES	95.95
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	95.94
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	95.94
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	95.93
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	95.91
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	95.91
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	95.91
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	95.9
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	95.88
3ice_A	422	Transcription termination factor RHO; transcriptio	95.88
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	95.87
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	95.87
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	95.86
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	95.85
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	95.85
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	95.83
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	95.83
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	95.82
1nrj_B	218	SR-beta, signal recognition particle receptor beta	95.81
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	95.81
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	95.81
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	95.81
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.8
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	95.8
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	95.8
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	95.79
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	95.78
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	95.77
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	95.75
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	95.75
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	95.74
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	95.74
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	95.73
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	95.73
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	95.73
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	95.73
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	95.72
2qgz_A	308	Helicase loader, putative primosome component; str	95.72
2hf9_A	226	Probable hydrogenase nickel incorporation protein	95.71
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	95.68
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	95.68
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	95.67
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	95.65
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	95.65
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	95.65
2r6a_A	454	DNAB helicase, replicative helicase; replication,	95.63
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	95.62
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	95.62
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	95.62
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	95.61
2z43_A	324	DNA repair and recombination protein RADA; archaea	95.61
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	95.61
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	95.61
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	95.59
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	95.58
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	95.58
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	95.58
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	95.57
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	95.57
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	95.56
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	95.54
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	95.54
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	95.54
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	95.54
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	95.54
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	95.53
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	95.53
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	95.52
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	95.52
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	95.51
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	95.5
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	95.5
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	95.49
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	95.47
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	95.47
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	95.47
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	95.44
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	95.42
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	95.39
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	95.39
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	95.38
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	95.37
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	95.35
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	95.35
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	95.34
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	95.34
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	95.34
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	95.33
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	95.31
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	95.31
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	95.3
2xxa_A	433	Signal recognition particle protein; protein trans	95.3
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	95.29
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	95.29
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	95.29
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	95.29
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	95.29
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	95.28
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	95.27
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	95.25
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	95.24
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	95.23
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	95.23
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	95.22
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	95.2
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	95.19
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	95.19
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	95.18
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	95.18
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	95.17
2fh5_B	214	SR-beta, signal recognition particle receptor beta	95.16
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	95.14
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	95.14
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	95.13
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	95.12
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	95.1
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	95.08
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	95.07
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	95.06
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	95.04
1p6x_A	334	Thymidine kinase; P-loop, LID, transferase; HET: T	95.03
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	95.02
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	95.02
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	95.02
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	95.01
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	95.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	94.98
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	94.98
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	94.96
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	94.94
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	94.93
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	94.92
1u94_A	356	RECA protein, recombinase A; homologous recombinat	94.91
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	94.9
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	94.9
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	94.87
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	94.87
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	94.85
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	94.84
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	94.83
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	94.8
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	94.79
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	94.78
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	94.76
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	94.75
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	94.73
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	94.72
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	94.72
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	94.71
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	94.71
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	94.7
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	94.68
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	94.68
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	93.7
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	94.67
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	94.67
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	94.67

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=100.00  E-value=4.6e-70  Score=504.23  Aligned_cols=253  Identities=40%  Similarity=0.717  Sum_probs=240.4

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccchHHHHHHHH
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQFCEDA  115 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~~~f~~~~  115 (298)
                      .+.+|+|+||||||||||+..||+.+++++||+||+|||++++|+|++|++.|+.+++|||++..++.+.|++++|.+.+
T Consensus         9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~~~~igTakp~~~E~~~v~hhlid~~~~~e~~s~~~f~~~a   88 (316)
T 3foz_A            9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLLDIRDPSQAYSAADFRRDA   88 (316)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHHH
T ss_pred             CCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccccccccccCCCCCHHHHcCCCEEEeccCCccccccHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhHHHhhcCCceEEEchhHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhhCHHHHHHHHhcCCccccC----------
Q psy8556         116 LFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTKFNIDINKYGISFLYDKLKLLDPVTAN----------  185 (298)
Q Consensus       116 ~~~i~~i~~~~~~~IlvGGt~~y~~~ll~~~~~~p~~d~~lr~~l~~~~~~~g~~~l~~~L~~~Dp~~a~----------  185 (298)
                      .+.+.++..+|++||+||||++|++++++|+.++|+.|+++|.+++..+.+.|+..||+.|+++||++|+          
T Consensus        89 ~~~i~~i~~~g~~pilVGGTglYi~all~gl~~~p~~~~~~R~~l~~~~~~~g~~~l~~~L~~~DP~~A~ri~pnd~~Ri  168 (316)
T 3foz_A           89 LAEMADITAAGRIPLLVGGTMLYFKALLEGLSPLPSADPEVRARIEQQAAEQGWESLHRQLQEVDPVAAARIHPNDPQRL  168 (316)
T ss_dssp             HHHHHHHHHTTCEEEEEESCHHHHHHHHSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHSCTTCHHHH
T ss_pred             HHHHHHHHhCCCcEEEEcCcHHHHHHHHcCcCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHHhCHHHHhhCCCccHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999887          


Q ss_pred             ---------------------------------CCC-ChHHHHHHHHHHHHHHHhccchHHHHHHHHHhcCCCCCCCccc
Q psy8556         186 ---------------------------------QPS-NRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMK  231 (298)
Q Consensus       186 ---------------------------------~~~-~r~~L~~ri~~Rv~~M~~~G~l~~Ev~~l~~~~~~~~~~~~~~  231 (298)
                                                       +.+ ||++||+||++||+.|+++| |++||+.|++.+.+..+.++++
T Consensus       169 ~RALEV~~~TG~~~S~~~~~~~~~~~~~~~~i~L~~~~R~~L~~RI~~Rvd~Ml~~G-l~eEv~~L~~~~~~~~~~~~~~  247 (316)
T 3foz_A          169 SRALEVFFISGKTLTELTQTSGDALPYQVHQFAIAPASRELLHQRIEQRFHQMLASG-FEAEVRALFARGDLHTDLPSIR  247 (316)
T ss_dssp             HHHHHHHHHHSSCHHHHHTSCCCCCSSEEEEEEEECSSHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHSCCCTTSTTTT
T ss_pred             HHHHHHHHHHCCCHHHHhhccCCCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHccCCCccCccce
Confidence                                             224 89999999999999999999 9999999999844678899999


Q ss_pred             ccChhhHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHhcCCCCceeecCCCchHHHH
Q psy8556         232 CIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQK  289 (298)
Q Consensus       232 ~IGyke~~~~l~g~~~~~~~~~~~~~~tr~yakrQ~twfr~~~~~~~~~~~~~~~~~~  289 (298)
                      +|||||+++||+|+++++++++.++.+||||||||+||||++++++|+|.++.+.+..
T Consensus       248 aIGYkE~~~yL~G~~s~~eai~~~~~~TR~yAKRQ~TWfR~~~~~~w~~~~~~~~~~~  305 (316)
T 3foz_A          248 CVGYRQMWSYLEGEISYDEMVYRGVCATRQLAKRQITWLRGWEGVHWLDSEKPEQARD  305 (316)
T ss_dssp             STTHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSSCEEEETTCHHHHHH
T ss_pred             eeehhhHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeEeCCcChHHHHH
Confidence            9999999999999999999999999999999999999999999999999877554433

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=100.00  E-value=1.6e-69  Score=501.32  Aligned_cols=255  Identities=36%  Similarity=0.537  Sum_probs=239.1

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccchHHHHHHHH
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQFCEDA  115 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~~~f~~~~  115 (298)
                      ++++|+|+||||||||||+..||+.+++++||+||+|||++++|+|++|++.|+.+++|||++..++.+.|++++|.+.+
T Consensus         2 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~~~F~~~a   81 (322)
T 3exa_A            2 KEKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVADFQDLA   81 (322)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHHHHHHHH
T ss_pred             CCcEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhccHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhHHHhhcCCceEEEchhHHHHHHHHccCCCCCC-CCHHHHHHHHHHHHhhCHHHHHHHHhcCCccccC---------
Q psy8556         116 LFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPP-ANLKLRTKFNIDINKYGISFLYDKLKLLDPVTAN---------  185 (298)
Q Consensus       116 ~~~i~~i~~~~~~~IlvGGt~~y~~~ll~~~~~~p~-~d~~lr~~l~~~~~~~g~~~l~~~L~~~Dp~~a~---------  185 (298)
                      .+.+.++..+|++||+||||++|++|+++|+...|. .|+++|+++...+.+.|+..||+.|+++||++|+         
T Consensus        82 ~~~i~~i~~~gk~pIlVGGTglYi~aLl~g~~~~~~~~~~~~R~~l~~~~~~~g~~~L~~~L~~~DP~~A~~i~pnd~~R  161 (322)
T 3exa_A           82 TPLITEIHERGRLPFLVGGTGLYVNAVIHQFNLGDIRADEDYRHELEAFVNSYGVQALHDKLSKIDPKAAAAIHPNNYRR  161 (322)
T ss_dssp             HHHHHHHHHTTCEEEEESCCHHHHHHHHHTCCCCCCBCCHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSCTTCHHH
T ss_pred             HHHHHHHHhCCCcEEEEcCcHHHHHHHHcCCcCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHhhCHHHHhhcCcccHHH
Confidence            999999999999999999999999999999877666 6889999999999999999999999999999987         


Q ss_pred             -----------------------------------CCCChHHHHHHHHHHHHHHHhccchHHHHHHHHHhcCCCCCCCcc
Q psy8556         186 -----------------------------------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSM  230 (298)
Q Consensus       186 -----------------------------------~~~~r~~L~~ri~~Rv~~M~~~G~l~~Ev~~l~~~~~~~~~~~~~  230 (298)
                                                         +.+||++||+||++||+.|+++| |++||+.|+.. + ..+.+++
T Consensus       162 i~RALEV~~~TG~~~S~~~~~~~~~~~~~~~~~i~L~~~R~~L~~RI~~Rvd~Ml~~G-l~eEv~~L~~~-~-~~~~~a~  238 (322)
T 3exa_A          162 VIRALEIIKLTGKTVTEQARHEEETPSPYNLVMIGLTMERDVLYDRINRRVDQMVEEG-LIDEAKKLYDR-G-IRDCQSV  238 (322)
T ss_dssp             HHHHHHHHHHTC--------------CCSEEEEEEEECCHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHT-T-CCSSTGG
T ss_pred             HHHHHHHHHHHCCCHHHHhhhccCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHCC-HHHHHHHHHhc-C-CCcCccc
Confidence                                               23589999999999999999999 99999999998 5 7789999


Q ss_pred             cccChhhHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHhcCCCCceeecCCCchHHHHHHHHH
Q psy8556         231 KCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQKILNLI  294 (298)
Q Consensus       231 ~~IGyke~~~~l~g~~~~~~~~~~~~~~tr~yakrQ~twfr~~~~~~~~~~~~~~~~~~~~~~~  294 (298)
                      ++|||||+++||+|+++++++++.++.+||||||||+||||++++++|+|.+++ ..+++++.|
T Consensus       239 ~aIGYkE~~~yL~G~~sl~eaie~i~~~TR~yAKRQ~TWfR~~~~~~w~~~~~~-~~~~i~~~i  301 (322)
T 3exa_A          239 QAIGYKEMYDYLDGNVTLEEAIDTLKRNSRRYAKRQLTWFRNKANVTWFDMTDV-DFDKKIMEI  301 (322)
T ss_dssp             GSTTTHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEECTTC-CHHHHHHHH
T ss_pred             eeeeHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEeCCCCC-CHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999998764 344444443

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=100.00  E-value=5.1e-63  Score=461.16  Aligned_cols=258  Identities=41%  Similarity=0.745  Sum_probs=203.7

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccchHHHHHHHHH
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQFCEDAL  116 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~~~f~~~~~  116 (298)
                      +.+|+|+||||||||||+..||+.+++++|++|+.|+|+|++++|++|+..++.+++||+++..++.+.+++..|.+.+.
T Consensus         5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy~~~~igTakp~~~e~~gvph~lid~~~~~~~~~~~~F~~~a~   84 (323)
T 3crm_A            5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSRELLARYPHRLIDIRDPAESYSAAEFRADAL   84 (323)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhhcCCCcccCCCCHHHHcCCCEEEeeccCcccccCHHHHHHHHH
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhHHHhhcCCceEEEchhHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhhCHHHHHHHHhcCCccccC-----------
Q psy8556         117 FSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTKFNIDINKYGISFLYDKLKLLDPVTAN-----------  185 (298)
Q Consensus       117 ~~i~~i~~~~~~~IlvGGt~~y~~~ll~~~~~~p~~d~~lr~~l~~~~~~~g~~~l~~~L~~~Dp~~a~-----------  185 (298)
                      +.+.++..+|+.||++|||++|++++++++.++|+.++++|.+++..+.+.|++.||+.|+++||++|+           
T Consensus        85 ~~i~~i~~~g~~~IlvGGt~~y~~all~g~~~~p~~~~~~R~~l~~~~~~~g~~~l~~~L~~~Dp~~a~~i~~nd~~Ri~  164 (323)
T 3crm_A           85 AAMAKATARGRIPLLVGGTMLYYKALLEGLADMPGADPEVRAAIEAEAQAEGWEALHRQLAEVDPESAARIHPNDPQRLM  164 (323)
T ss_dssp             HHHHHHHHTTCEEEEEESCHHHHHHHHCCC--------------------------------------------------
T ss_pred             HHHHHHHHcCCeEEEECCchhhHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHhCHHHHhhcCCCCHHHHH
Confidence            999999999999999999999999999999888988999999999999999999999999999999876           


Q ss_pred             --------------------C-----------------------CC-ChHHHHHHHHHHHHHHHhccchHHHHHHHHHhc
Q psy8556         186 --------------------Q-----------------------PS-NRHILHKRISDRFKKMLDQDLLINEVKKIRKKW  221 (298)
Q Consensus       186 --------------------~-----------------------~~-~r~~L~~ri~~Rv~~M~~~G~l~~Ev~~l~~~~  221 (298)
                                          -                       .. ||++||+||++||+.|+++| |++||+.|+..+
T Consensus       165 RALEv~~~tG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~~L~~RI~~Rvd~M~~~G-l~~Ev~~L~~~~  243 (323)
T 3crm_A          165 RALEVYRLGGVSMSDLRRRQSAEKADFDASGRNQLPYTVAQLAIAPEQRQVLHARIAQRFRQMLEQG-FIAEVEALHARS  243 (323)
T ss_dssp             -----------------------------------CSEEEEEEEECSSHHHHHHHHHHHHHHHHHTT-HHHHHHHHHTCT
T ss_pred             HHHHHHHHHCCCHHHHHhhccccccccccccccCCCCceEEEEEcCCCHHHHHHHHHHHHHHHHHCC-HHHHHHHHHhcC
Confidence                                0                       02 49999999999999999999 999999999874


Q ss_pred             CCCCCCCcccccChhhHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHhcCCCCceeecCCCchHHHHHHHHHH
Q psy8556         222 NLNLNLPSMKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQKILNLIK  295 (298)
Q Consensus       222 ~~~~~~~~~~~IGyke~~~~l~g~~~~~~~~~~~~~~tr~yakrQ~twfr~~~~~~~~~~~~~~~~~~~~~~~~  295 (298)
                      ++..+.+++++|||||+++||+|+++++++++.++.+||||||||+||||++++++|++.++++..+.+++.+.
T Consensus       244 ~~~~~~~~~~aIGyke~~~yl~g~~~~~eai~~~~~~Tr~yAKRQ~TWfr~~~~~~w~~~~~~~~~~~~~~~~~  317 (323)
T 3crm_A          244 DLHAGLPSIRAVGYRQVWDYLDGKLSYAEMTERGIIATRQLAKRQFTWLRSWSHLHWMDSLAGDNLPRALRYLK  317 (323)
T ss_dssp             TCCTTSSGGGSTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHTCSSCEEEETTCSCHHHHHHHHHH
T ss_pred             CCCCCCcchheecHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeEecCCCchHHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999766555566666554

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=100.00  E-value=7.1e-63  Score=470.78  Aligned_cols=247  Identities=26%  Similarity=0.445  Sum_probs=222.5

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccchHHHHHHHHH
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQFCEDAL  116 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~~~f~~~~~  116 (298)
                      +++|+|+||||||||||+..|+..+++++||+|++|||++++|+|++|+..|+.+++|||++..++.+.|++++|.+.+.
T Consensus         2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F~~~a~   81 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFETECM   81 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHHHHHHH
T ss_pred             CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhHHHhhcCCceEEEchhHHHHHHHHccCCCCCC-CCHHHHHHHHHHHHhhCHHHHHHHHhcCCccccC----------
Q psy8556         117 FSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPP-ANLKLRTKFNIDINKYGISFLYDKLKLLDPVTAN----------  185 (298)
Q Consensus       117 ~~i~~i~~~~~~~IlvGGt~~y~~~ll~~~~~~p~-~d~~lr~~l~~~~~~~g~~~l~~~L~~~Dp~~a~----------  185 (298)
                      +.|.++..+|++||+||||++|++|+++++++.|+ .++.++..+ ..+...|+.+||+.|+++||++|+          
T Consensus        82 ~~i~~i~~~g~~pilVGGTglYi~aLl~gl~~~~~~~~~~~r~~~-~~~~~~g~~~L~~~L~~~DP~~A~rihpnd~~Ri  160 (409)
T 3eph_A           82 NAIEDIHRRGKIPIVVGGTHYYLQTLFNKRVDTKSSERKLTRKQL-DILESTDPDVIYNTLVKCDPDIATKYHPNDYRRV  160 (409)
T ss_dssp             HHHHHHHTTTCEEEEECSCGGGGGGGGTCSCCCSSSCCCCCHHHH-HHHTCSSSSSHHHHHHHSCHHHHTTSCTTCHHHH
T ss_pred             HHHHHHHhcCCCEEEECChHHHHHHHHccccCCCCccCHHHHHHH-HHHhccCHHHHHHHHHHhCHHHHHhcCcccHHHH
Confidence            99999999999999999999999999999876664 455555544 356667789999999999999887          


Q ss_pred             ---------------------------------CCCChHHHHHHHHHHHHHHHhccchHHHHHHHHHhcCCC------CC
Q psy8556         186 ---------------------------------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLN------LN  226 (298)
Q Consensus       186 ---------------------------------~~~~r~~L~~ri~~Rv~~M~~~G~l~~Ev~~l~~~~~~~------~~  226 (298)
                                                       +..||++||+||++||+.|+++| |++||+.|+..+...      ..
T Consensus       161 ~RALEV~~~TG~~~S~~~~~~~~~~~~~~~~i~L~~~R~~L~~RI~~Rvd~Ml~~G-lleEv~~L~~~~~~~~~~~~~~~  239 (409)
T 3eph_A          161 QRMLEIYYKTGKKPSETFNEQKITLKFDTLFLWLYSKPEPLFQRLDDRVDDMLERG-ALQEIKQLYEYYSQNKFTPEQCE  239 (409)
T ss_dssp             HHHHHHHHHHCSCHHHHHHTCCCCCSSEEEEEEEECCHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTTTTCCGGGTT
T ss_pred             HHHHHHHHHHCCCHHHHHhhccCCCCcceEEEEEeCCHHHHHHHHHHHHHHHHHCc-HHHHHHHHHHhcccccccccccc
Confidence                                             34689999999999999999999 999999999873111      23


Q ss_pred             CCcccccChhhHHHHHcC-----CCCHHHHHHHHHHHHHHHHhHHHHHhcCC------CCceeecCCCch
Q psy8556         227 LPSMKCIGYRQTWEYIDG-----LIDRNTLKEKSIIATRQLAKQQLTWLRNM------NEKITIDCLEKN  285 (298)
Q Consensus       227 ~~~~~~IGyke~~~~l~g-----~~~~~~~~~~~~~~tr~yakrQ~twfr~~------~~~~~~~~~~~~  285 (298)
                      .+++++|||||+++||+|     +++++++++.++.+||||||||+||||++      .+++|+|.++.+
T Consensus       240 ~~~~~aIGYkE~~~yL~g~~~~~e~~l~eaie~ik~~TRqyAKRQ~TWfR~~~~~~~~~~i~~lD~t~~~  309 (409)
T 3eph_A          240 NGVWQVIGFKEFLPWLTGKTDDNTVKLEDCIERMKTRTRQYAKRQVKWIKKMLIPDIKGDIYLLDATDLS  309 (409)
T ss_dssp             SGGGGSTTTGGGGGGGC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTCEEEEECSCTT
T ss_pred             ccchhcccHHHHHHHHcCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCceEEEcCCChh
Confidence            689999999999999999     58999999999999999999999999999      689999987755

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=100.00  E-value=9.8e-61  Score=448.30  Aligned_cols=254  Identities=32%  Similarity=0.440  Sum_probs=232.6

Q ss_pred             eEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccchHHHHHHHHHH
Q psy8556          38 TKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQFCEDALF  117 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~~~f~~~~~~  117 (298)
                      .+|+|+||||||||||+..|++.+++++||+|+.|+|++++++|++|+..++.+++||+++..++.+.+++.+|.+.+..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~qvYr~~~i~Takp~~eE~~~v~hhl~di~~~~~~~~~~dF~~~a~~   87 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMIDILPPDASFSAYEFKKRAEK   87 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSSTTBTTCCTTTTCCCTTTTTTCCEESSSCBCTTSCCCHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcCCceeccccccccccccccccCCCHHHHHHHHHHHHHHhCCccccCHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHhhcCCceEEEchhHHHHHHHHccCCCCCC-CCHH----HHHHHHHHHHhhCHHHHHHHHhcCCccccC-------
Q psy8556         118 SIKNILKKKKLPLLVGGTMLYFKALRDGINKLPP-ANLK----LRTKFNIDINKYGISFLYDKLKLLDPVTAN-------  185 (298)
Q Consensus       118 ~i~~i~~~~~~~IlvGGt~~y~~~ll~~~~~~p~-~d~~----lr~~l~~~~~~~g~~~l~~~L~~~Dp~~a~-------  185 (298)
                      .+.++..+++.||++||+++|+++++.+++.+|+ .|++    +++++.+ +.++|++.++++|+.+||.+++       
T Consensus        88 ~i~~i~~~g~~~IlvGGt~ly~~~l~~~l~~~~~~~d~~~~~Rlrrrl~r-~~~~G~~~l~~~L~~vdP~~a~~I~p~d~  166 (340)
T 3d3q_A           88 YIKDITRRGKVPIIAGGTGLYIQSLLYNYAFEDESISEDKMKQVKLKLKE-LEHLNNNKLHEYLASFDKESAKDIHPNNR  166 (340)
T ss_dssp             HHHHHHHTTCEEEEECCCHHHHHHHHBCSCCC---CCHHHHHHHHHHHHT-TSSSCHHHHHHHHHHHCHHHHHHSCTTCH
T ss_pred             HHHHHHhCCCcEEEECChhhhHHHHHhcccccCCCCChHHHHHHHHHHHH-HHhcCHHHHHHHHHhhCcHHHhhcCccCc
Confidence            9999988999999999999999999999877788 8888    9999988 8899999999999999999876       


Q ss_pred             ------------------------------------CCCChHHHHHHHHHHHHHHHhccchHHHHHHHHHhcCCCCCCCc
Q psy8556         186 ------------------------------------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPS  229 (298)
Q Consensus       186 ------------------------------------~~~~r~~L~~ri~~Rv~~M~~~G~l~~Ev~~l~~~~~~~~~~~~  229 (298)
                                                          +.+||++|++||++||+.|+++| |++||+.|++. ++. +.++
T Consensus       167 ~Ri~RALEv~~~tG~~~s~~~~~~~~~~~~~~~~~~L~~~r~~L~~RI~~Rvd~M~~~G-l~~Ev~~L~~~-~~~-~~~~  243 (340)
T 3d3q_A          167 KRVLRAIEYYLKTKKLLSSRKKVQQFTENYDTLLIGIEMSRETLYLRINKRVDIMLGHG-LFNEVQHLVEQ-GFE-ASQS  243 (340)
T ss_dssp             HHHHHHHHHHHHHCSCSHHHHHHHHHSBCSEEEEEEEECCHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHT-TCT-TSSG
T ss_pred             hhhhhHHHHHHHhCCChHHHhhhccCCCCCceEEEEeCCCHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHc-CCC-cchh
Confidence                                                23589999999999999999999 99999999987 444 7899


Q ss_pred             ccccChhhHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHhcCCCCceeecCCC---chHHHHHHHHHH
Q psy8556         230 MKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLE---KNCVQKILNLIK  295 (298)
Q Consensus       230 ~~~IGyke~~~~l~g~~~~~~~~~~~~~~tr~yakrQ~twfr~~~~~~~~~~~~---~~~~~~~~~~~~  295 (298)
                      +++|||||+++||+|+++++++++.++.+||||||||+||||++++++|++.++   .+..+.+++++.
T Consensus       244 ~~aIGyke~~~yl~g~~~~~ea~~~~~~~Tr~yAKRQ~TWfr~~~~~~w~~~~~~~~~~~~~~~~~~~~  312 (340)
T 3d3q_A          244 MQAIGYKELVPVIKGNISMENAVEKLKQHSRQYAKRQLTWFKNKMNVHWLNKERMSLQMMLDEITTQIN  312 (340)
T ss_dssp             GGSTTTTTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEETTTCCHHHHHHHHHHHHH
T ss_pred             hhhccHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeeecCcccchHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999998643   222344555554

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=100.00  E-value=4.6e-54  Score=402.12  Aligned_cols=234  Identities=22%  Similarity=0.269  Sum_probs=195.4

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCc-CccchHHHHHH
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEP-TKSYSVIQFCE  113 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~-~e~~s~~~f~~  113 (298)
                      .++++|+|+||||||||||+..||+.+++++||+|++|||+|++|+|++|+..|+.+++|||+++.++ .+.|++.+|.+
T Consensus        38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e~~s~~~F~~  117 (339)
T 3a8t_A           38 RKEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELTPADFRS  117 (339)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGCCCCHHHHHH
T ss_pred             cCCceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccCccCHHHHHH
Confidence            45679999999999999999999999999999999999999999999999999999999999999999 89999999999


Q ss_pred             HHHHhhHHHhhcCCceEEEchhHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhhCHHHHHHHHhcCCccccC---CCCCh
Q psy8556         114 DALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTKFNIDINKYGISFLYDKLKLLDPVTAN---QPSNR  190 (298)
Q Consensus       114 ~~~~~i~~i~~~~~~~IlvGGt~~y~~~ll~~~~~~p~~d~~lr~~l~~~~~~~g~~~l~~~L~~~Dp~~a~---~~~~r  190 (298)
                      .+.+.+.++..++++||++|||++|+++++.++.+.++.|+.-..        . .+    .+....+...-   ++++|
T Consensus       118 ~a~~~i~~i~~~g~~pIlvGGtglYi~all~g~~~p~~~d~~~a~--------~-~~----~~~~~~~~~~~~i~L~~~r  184 (339)
T 3a8t_A          118 LAGKAVSEITGRRKLPVLVGGSNSFIHALLVDRFDSSGPGVFEEG--------S-HS----VVSSELRYDCCFLWVDVSV  184 (339)
T ss_dssp             HHHHHHHHHHHTTCEEEEECCCHHHHHHHHBSSCCTTCC--------------------------CBSSEEEEEEEECCH
T ss_pred             HHHHHHHHHHhcCCeEEEEcCHHHHHHHHHhCCCCCcccChhhhc--------c-cC----ccccccccCeEEEEEeCCH
Confidence            999999999999999999999999999999987332224442111        0 00    11111111111   55689


Q ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHHHhcCCCC-------CCCcccccChhhHHHHHcC-----------------CC
Q psy8556         191 HILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNL-------NLPSMKCIGYRQTWEYIDG-----------------LI  246 (298)
Q Consensus       191 ~~L~~ri~~Rv~~M~~~G~l~~Ev~~l~~~~~~~~-------~~~~~~~IGyke~~~~l~g-----------------~~  246 (298)
                      ++|++||++|++.|+++| +++||+.|+.. +...       ..+++|+|||||+++||+|                 ++
T Consensus       185 e~L~~RI~~R~~~Ml~~G-l~eEv~~L~~~-~~~~~~~~~~~~~~~~~aIGykE~~~yl~g~~~~~~~~~~~~~~~~~~~  262 (339)
T 3a8t_A          185 KVLTDYLAKRVDDMLELG-MFDELAEFYSP-EDEDHDEDSATRTGLRKAIGVPEFDRYFEKFRPGDVEGEDPGRDRVRRG  262 (339)
T ss_dssp             HHHHHHHHHHHHHHHHHT-HHHHHHHHCCT-TCSCTTSCGGGSCGGGGSTTHHHHHHHHHHSCTTCCCCSCCTTHHHHHH
T ss_pred             HHHHHHHHhhccHhhhcc-HHHHHHHHHHh-cCccccccchhccHHHHHhhHHHHHHHHcCcccccccccccccchhhhc
Confidence            999999999999999999 99999999987 3322       2899999999999999998                 57


Q ss_pred             CHHHHHHHHHHHHHHHHhHHHHHhcCCCC----ceeecCCC
Q psy8556         247 DRNTLKEKSIIATRQLAKQQLTWLRNMNE----KITIDCLE  283 (298)
Q Consensus       247 ~~~~~~~~~~~~tr~yakrQ~twfr~~~~----~~~~~~~~  283 (298)
                      +++++++.++.+||||||||+||||++.+    ++|+|.++
T Consensus       263 ~l~eaie~ik~~TR~yAKRQ~tWfr~~~~~~w~i~~lDat~  303 (339)
T 3a8t_A          263 AFEEAVRAIKENTCHLAKRQIGKILRLKGAGWDLRRLDATE  303 (339)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEECHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCceeeecccc
Confidence            89999999999999999999999998764    45676543

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=99.96  E-value=1.4e-28  Score=221.77  Aligned_cols=205  Identities=17%  Similarity=0.160  Sum_probs=164.4

Q ss_pred             eEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCc-cchHHHHHHHHH
Q psy8556          38 TKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTK-SYSVIQFCEDAL  116 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e-~~s~~~f~~~~~  116 (298)
                      ++|+|+||||||||||++.||+.++.++++.|+.++|+++++++.+|+..+..+++|++++...+.+ .++...|.+.+.
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~   81 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRRLI   81 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHHHH
Confidence            4799999999999999999999999999999999999999999999999999999999999877766 789999999888


Q ss_pred             HhhHHHhhcCCceEEEchhHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhhCHHHHHHHHhcCCccccCCCCC-hHHHHH
Q psy8556         117 FSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTKFNIDINKYGISFLYDKLKLLDPVTANQPSN-RHILHK  195 (298)
Q Consensus       117 ~~i~~i~~~~~~~IlvGGt~~y~~~ll~~~~~~p~~d~~lr~~l~~~~~~~g~~~l~~~L~~~Dp~~a~~~~~-r~~L~~  195 (298)
                      ..+ ++..+++.+|++||++.|+++++.....                 ..+          .+....-+..+ ++.+.+
T Consensus        82 ~~i-~~~~~g~~vIl~gg~~~~~~~~~~~~~~-----------------~~~----------~~~~~i~l~~~~~e~l~~  133 (253)
T 2ze6_A           82 FEV-DWRKSEEGLILEGGSISLLNCMAKSPFW-----------------RSG----------FQWHVKRLRLGDSDAFLT  133 (253)
T ss_dssp             HHH-HTTTTSSEEEEEECCHHHHHHHHHCTTT-----------------TSS----------CEEEEEECCCCCHHHHHH
T ss_pred             HHH-HHHhCCCCeEEeccHHHHHHHHHhcccc-----------------ccc----------CceEEEEecchhHHHHHH
Confidence            888 8888899999999999888887754100                 000          00000002234 699999


Q ss_pred             HHHHHHHHHHhc-----cchHHHHHHHHHhcCCCCCCCcccccChhhHHHHHc------CC------CCHHHHHHHHHHH
Q psy8556         196 RISDRFKKMLDQ-----DLLINEVKKIRKKWNLNLNLPSMKCIGYRQTWEYID------GL------IDRNTLKEKSIIA  258 (298)
Q Consensus       196 ri~~Rv~~M~~~-----G~l~~Ev~~l~~~~~~~~~~~~~~~IGyke~~~~l~------g~------~~~~~~~~~~~~~  258 (298)
                      |+.+|.++|+..     + +++|+..+++....  ...+...+||+|+++|+.      ++      ..++++++.|+.+
T Consensus       134 Rl~~R~~~ml~~~~~~~~-~l~e~~~~~~~p~~--~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~i~~~  210 (253)
T 2ze6_A          134 RAKQRVAEMFAIREDRPS-LLEELAELWNYPAA--RPILEDIDGYRCAIRFARKHDLAISQLPNIDAGRHVELIEAIANE  210 (253)
T ss_dssp             HHHHHHHHHHCCCSSSCC-HHHHHHHHHTSTTH--HHHHTTSTTHHHHHHHHHHHTCCGGGGGGCCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCcccch-HHHHHHHhcCCcch--HHHHHHHhhHHHHHHHHHhcCCCcchhhhhHHHHHHHHHHHHHHH
Confidence            999999999877     8 99999999975211  122334679999999995      22      2378999999999


Q ss_pred             HHHHHhHHHHHhcCC
Q psy8556         259 TRQLAKQQLTWLRNM  273 (298)
Q Consensus       259 tr~yakrQ~twfr~~  273 (298)
                      |++|||||.+||.+|
T Consensus       211 ~~~~a~~q~~~~~~w  225 (253)
T 2ze6_A          211 YLEHALSQERDFPQW  225 (253)
T ss_dssp             HHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999777554

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=99.14  E-value=7.1e-12  Score=108.69  Aligned_cols=79  Identities=24%  Similarity=0.284  Sum_probs=68.7

Q ss_pred             cccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEecccc---CCCCCCCHHHHccccccc----cccc
Q psy8556          28 IRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMD---IGTNKPSIIEREITPHHL----IDII  100 (298)
Q Consensus        28 ~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~---i~t~kp~~~e~~~v~~~l----~~~~  100 (298)
                      +++..+...+..|+|+||||||||||+..|++..+ ++|+.|+.|||++.+   ++|++|+      ++|++    ++++
T Consensus        25 lHa~~v~~~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~~v~~~~~~~liGtak~~------i~h~lEiRGigii   97 (205)
T 2qmh_A           25 MHGVLVDIYGLGVLITGDSGVGKSETALELVQRGH-RLIADDRVDVYQQDEQTIVGAAPPI------LSHLLEIRGLGII   97 (205)
T ss_dssp             EESEEEEETTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEEEEEECSTTCEEEECCSS------STTEEEETTTEEE
T ss_pred             eeEEEEEECCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchhheeecCCceEEEECCcc------ccccccccceeEE
Confidence            55555667788999999999999999999999876 999999999999998   8999886      89998    8888


Q ss_pred             CcCccchHHHHHH
Q psy8556         101 EPTKSYSVIQFCE  113 (298)
Q Consensus       101 ~~~e~~s~~~f~~  113 (298)
                      ++.+.|++..|..
T Consensus        98 d~~~~f~~~~f~~  110 (205)
T 2qmh_A           98 DVMNLFGAGAVRE  110 (205)
T ss_dssp             EHHHHHCTTSBCS
T ss_pred             cccccCCHHHHHh
Confidence            8888888877754

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=98.98  E-value=6.2e-10  Score=104.73  Aligned_cols=143  Identities=15%  Similarity=0.135  Sum_probs=83.8

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHH
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIE   88 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e   88 (298)
                      ..++.|+++...++++++     .-++|++++|+||||||||||++.|++.+.     +++|+| +.|.++....+....
T Consensus        19 ~l~~~y~g~~~vl~~vsl-----~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~~~~~~~r~   88 (355)
T 1z47_A           19 GVEKIYPGGARSVRGVSF-----QIREGEMVGLLGPSGSGKTTILRLIAGLER-----PTKGDVWIGGKRVTDLPPQKRN   88 (355)
T ss_dssp             EEEECCTTSTTCEEEEEE-----EEETTCEEEEECSTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTTCCGGGSS
T ss_pred             EEEEEEcCCCEEEeeeEE-----EECCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCccEEEECCEECCcCChhhCc
Confidence            356778544456666666     124567899999999999999999999877     899999 678777543322222


Q ss_pred             HcccccccccccCcCccchHHHHHHH-----------HHHhhHHHhh--------cCCceEEEchhH---HHHHHHHcc-
Q psy8556          89 REITPHHLIDIIEPTKSYSVIQFCED-----------ALFSIKNILK--------KKKLPLLVGGTM---LYFKALRDG-  145 (298)
Q Consensus        89 ~~~v~~~l~~~~~~~e~~s~~~f~~~-----------~~~~i~~i~~--------~~~~~IlvGGt~---~y~~~ll~~-  145 (298)
                      +..+++..    .....+++.+....           ..+.+.++.+        ...+--++||..   ...++++.+ 
T Consensus        89 ig~v~Q~~----~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P  164 (355)
T 1z47_A           89 VGLVFQNY----ALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRP  164 (355)
T ss_dssp             EEEECGGG----CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred             EEEEecCc----ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence            23333321    11222333222111           1111222211        112224788877   567888865 


Q ss_pred             ---CCCCCCC--CHHHHHHHHHHHHh
Q psy8556         146 ---INKLPPA--NLKLRTKFNIDINK  166 (298)
Q Consensus       146 ---~~~~p~~--d~~lr~~l~~~~~~  166 (298)
                         +.|.|.+  |+..+..+.+.+.+
T Consensus       165 ~lLLLDEP~s~LD~~~r~~l~~~l~~  190 (355)
T 1z47_A          165 QVLLFDEPFAAIDTQIRRELRTFVRQ  190 (355)
T ss_dssp             SEEEEESTTCCSSHHHHHHHHHHHHH
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHH
Confidence               4466754  88888887766543

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.98  E-value=1.3e-11  Score=107.11  Aligned_cols=120  Identities=18%  Similarity=0.156  Sum_probs=69.6

Q ss_pred             ccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccchHHHH-
Q psy8556          33 LLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQF-  111 (298)
Q Consensus        33 ~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~~~f-  111 (298)
                      |.++|++++|+||||||||||++.|++.++..        +....+.+|.+|...+..++.+++++...+...+....| 
T Consensus         4 m~~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~--------~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~l   75 (208)
T 3tau_A            4 MTERGLLIVLSGPSGVGKGTVREAVFKDPETS--------FDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKML   75 (208)
T ss_dssp             -CCCCCEEEEECCTTSCHHHHHHHHHHSTTCC--------CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEE
T ss_pred             ccCCCcEEEEECcCCCCHHHHHHHHHhhCCCc--------EEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEE
Confidence            45678999999999999999999999987621        233445567777777777777766543221111100011 


Q ss_pred             ---------HHHHHHhhHHHhhcCCceEE---EchhHHHHHHHHcc--CCCCCCCCHHHHHHH
Q psy8556         112 ---------CEDALFSIKNILKKKKLPLL---VGGTMLYFKALRDG--INKLPPANLKLRTKF  160 (298)
Q Consensus       112 ---------~~~~~~~i~~i~~~~~~~Il---vGGt~~y~~~ll~~--~~~~p~~d~~lr~~l  160 (298)
                               +......+.++...|+.+|+   +.|...+.+.....  ++..|++...+++|+
T Consensus        76 e~~~~~~~~yg~~~~~i~~~l~~g~~vild~~~~g~~~~~~~~~~~~~i~i~~ps~~~l~~Rl  138 (208)
T 3tau_A           76 EYAEYVGNYYGTPLEYVEEKLAAGVDIFLEIEVQGAMQVRKAMPEGIFIFLTPPDLSELKNRI  138 (208)
T ss_dssp             EEEEETTEEEEEEHHHHHHHHHTTCCEEEECCHHHHHHHHHHCTTSEEEEEECTTTTTSSCC-
T ss_pred             EEEEEccccCCCcHHHHHHHHHcCCeEEEEeeHHHHHHHHHhCCCeEEEEEeCCCHHHHHHHH
Confidence                     11112345677788998888   55655444433322  122255444444443

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=98.91  E-value=1.7e-09  Score=101.45  Aligned_cols=140  Identities=14%  Similarity=0.097  Sum_probs=82.0

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHH
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIE   88 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e   88 (298)
                      ..++.|++.  .++++++     .-++|++++|+||||||||||++.|++...     +++|+| +.|.++....+....
T Consensus         6 ~l~~~y~~~--~l~~vsl-----~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~~~g~~i~~~~~~~r~   73 (348)
T 3d31_A            6 SLSRKWKNF--SLDNLSL-----KVESGEYFVILGPTGAGKTLFLELIAGFHV-----PDSGRILLDGKDVTDLSPEKHD   73 (348)
T ss_dssp             EEEEECSSC--EEEEEEE-----EECTTCEEEEECCCTHHHHHHHHHHHTSSC-----CSEEEEEETTEECTTSCHHHHT
T ss_pred             EEEEEECCE--EEeeeEE-----EEcCCCEEEEECCCCccHHHHHHHHHcCCC-----CCCcEEEECCEECCCCchhhCc
Confidence            356778653  6666665     224567899999999999999999999877     899999 678777532222222


Q ss_pred             HcccccccccccCcCccchHHHHHHHHH--------HhhHHHhh--------cCCceEEEchhH---HHHHHHHcc----
Q psy8556          89 REITPHHLIDIIEPTKSYSVIQFCEDAL--------FSIKNILK--------KKKLPLLVGGTM---LYFKALRDG----  145 (298)
Q Consensus        89 ~~~v~~~l~~~~~~~e~~s~~~f~~~~~--------~~i~~i~~--------~~~~~IlvGGt~---~y~~~ll~~----  145 (298)
                      ...+++..    .....+++.+......        +.+.++.+        ...+--++||-.   ...++++.+    
T Consensus        74 ig~v~Q~~----~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lL  149 (348)
T 3d31_A           74 IAFVYQNY----SLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKIL  149 (348)
T ss_dssp             CEEECTTC----CCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEE
T ss_pred             EEEEecCc----ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence            33333321    1122233333221110        11122211        112224788877   466787765    


Q ss_pred             CCCCCC--CCHHHHHHHHHHHH
Q psy8556         146 INKLPP--ANLKLRTKFNIDIN  165 (298)
Q Consensus       146 ~~~~p~--~d~~lr~~l~~~~~  165 (298)
                      +.|.|.  -|+..+..+.+.+.
T Consensus       150 LLDEP~s~LD~~~~~~l~~~l~  171 (348)
T 3d31_A          150 LLDEPLSALDPRTQENAREMLS  171 (348)
T ss_dssp             EEESSSTTSCHHHHHHHHHHHH
T ss_pred             EEECccccCCHHHHHHHHHHHH
Confidence            345665  48888887766654

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=98.91  E-value=1.2e-09  Score=99.43  Aligned_cols=61  Identities=16%  Similarity=0.145  Sum_probs=48.3

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      ..+..|+++...++++++     .-++|++++|+||||||||||++.|++.+.     +++|+| +.|.++.
T Consensus        12 ~ls~~y~~~~~~L~~isl-----~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~-----p~~G~I~~~G~~i~   73 (275)
T 3gfo_A           12 ELNYNYSDGTHALKGINM-----NIKRGEVTAILGGNGVGKSTLFQNFNGILK-----PSSGRILFDNKPID   73 (275)
T ss_dssp             EEEEECTTSCEEEEEEEE-----EEETTSEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECC
T ss_pred             EEEEEECCCCeEEEeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCeEEEECCEECC
Confidence            457788766556777666     224467899999999999999999998876     899999 6887774

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=98.90  E-value=1.3e-09  Score=103.41  Aligned_cols=141  Identities=17%  Similarity=0.173  Sum_probs=83.3

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHH
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIE   88 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e   88 (298)
                      ..++.|++ ...++++++     .-++|++++|+||||||||||++.|++.+.     +++|+| +.|.++....+....
T Consensus         8 ~l~~~yg~-~~~L~~vsl-----~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-----p~~G~I~i~G~~~~~~~~~~r~   76 (381)
T 3rlf_A            8 NVTKAWGE-VVVSKDINL-----DIHEGEFVVFVGPSGCGKSTLLRMIAGLET-----ITSGDLFIGEKRMNDTPPAERG   76 (381)
T ss_dssp             EEEEEETT-EEEEEEEEE-----EECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTTCCGGGSC
T ss_pred             eEEEEECC-EEEEeeeEE-----EECCCCEEEEEcCCCchHHHHHHHHHcCCC-----CCCeEEEECCEECCCCCHHHCC
Confidence            35677753 345566655     224577899999999999999999999887     899999 588877644433322


Q ss_pred             HcccccccccccCcCccchHHHHHH-----------HHHHhhHHHhh--------cCCceEEEchhH---HHHHHHHcc-
Q psy8556          89 REITPHHLIDIIEPTKSYSVIQFCE-----------DALFSIKNILK--------KKKLPLLVGGTM---LYFKALRDG-  145 (298)
Q Consensus        89 ~~~v~~~l~~~~~~~e~~s~~~f~~-----------~~~~~i~~i~~--------~~~~~IlvGGt~---~y~~~ll~~-  145 (298)
                      ...+++..    .....+++.+...           ...+.+.++.+        ...+--++||-.   ...++++.+ 
T Consensus        77 ig~VfQ~~----~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P  152 (381)
T 3rlf_A           77 VGMVFQSY----ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEP  152 (381)
T ss_dssp             EEEECTTC----CCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCC
T ss_pred             EEEEecCC----cCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCC
Confidence            33333321    1122233322211           01111222211        112224788876   567888865 


Q ss_pred             ---CCCCCCC--CHHHHHHHHHHHH
Q psy8556         146 ---INKLPPA--NLKLRTKFNIDIN  165 (298)
Q Consensus       146 ---~~~~p~~--d~~lr~~l~~~~~  165 (298)
                         +.|.|.+  |+..+..+...+.
T Consensus       153 ~lLLLDEPts~LD~~~~~~l~~~l~  177 (381)
T 3rlf_A          153 SVFLLDEPLSNLDAALRVQMRIEIS  177 (381)
T ss_dssp             SEEEEESTTTTSCHHHHHHHHHHHH
T ss_pred             CEEEEECCCcCCCHHHHHHHHHHHH
Confidence               4466754  8888877766554

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=98.88  E-value=1.7e-09  Score=101.94  Aligned_cols=142  Identities=15%  Similarity=0.136  Sum_probs=83.2

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHH
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIE   88 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e   88 (298)
                      ..++.|++ ...+.++++     .-++|++++|+||||||||||++.|++.+.     +++|+| +.|.++....+....
T Consensus         8 ~l~~~y~~-~~vl~~vsl-----~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~~~~~~~r~   76 (362)
T 2it1_A            8 NIVKKFGN-FTALNNINL-----KIKDGEFMALLGPSGSGKSTLLYTIAGIYK-----PTSGKIYFDEKDVTELPPKDRN   76 (362)
T ss_dssp             EEEEESSS-SEEEEEEEE-----EECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTTSCGGGTT
T ss_pred             eEEEEECC-EEEEEeeEE-----EECCCCEEEEECCCCchHHHHHHHHhcCCC-----CCceEEEECCEECCcCCHhHCc
Confidence            35677743 345566655     224577899999999999999999999877     899999 678777543332222


Q ss_pred             HcccccccccccCcCccchHHHHHHH-----------HHHhhHHHhh--------cCCceEEEchhH---HHHHHHHcc-
Q psy8556          89 REITPHHLIDIIEPTKSYSVIQFCED-----------ALFSIKNILK--------KKKLPLLVGGTM---LYFKALRDG-  145 (298)
Q Consensus        89 ~~~v~~~l~~~~~~~e~~s~~~f~~~-----------~~~~i~~i~~--------~~~~~IlvGGt~---~y~~~ll~~-  145 (298)
                      +..+++..    .....+++.+....           ..+.+.++.+        ...+--++||..   ...++++.. 
T Consensus        77 ig~v~Q~~----~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P  152 (362)
T 2it1_A           77 VGLVFQNW----ALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEP  152 (362)
T ss_dssp             EEEECTTC----CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred             EEEEecCc----ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCC
Confidence            33333321    11222333322211           1111222221        112224788877   567888865 


Q ss_pred             ---CCCCCC--CCHHHHHHHHHHHHh
Q psy8556         146 ---INKLPP--ANLKLRTKFNIDINK  166 (298)
Q Consensus       146 ---~~~~p~--~d~~lr~~l~~~~~~  166 (298)
                         +.|.|.  -|+..+..+...+.+
T Consensus       153 ~lLLLDEP~s~LD~~~r~~l~~~l~~  178 (362)
T 2it1_A          153 EVLLLDEPLSNLDALLRLEVRAELKR  178 (362)
T ss_dssp             SEEEEESGGGGSCHHHHHHHHHHHHH
T ss_pred             CEEEEECccccCCHHHHHHHHHHHHH
Confidence               346664  488888887766543

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=98.87  E-value=1.8e-09  Score=101.59  Aligned_cols=59  Identities=15%  Similarity=0.171  Sum_probs=45.2

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccC
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDI   79 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i   79 (298)
                      ..++.|++ ...++++++     .-.+|++++|+||||||||||+++|++...     +++|+| +.|.++
T Consensus         9 ~ls~~y~~-~~~L~~vsl-----~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-----p~~G~I~i~G~~i   68 (359)
T 3fvq_A            9 HLSKSFQN-TPVLNDISL-----SLDPGEILFIIGASGCGKTTLLRCLAGFEQ-----PDSGEISLSGKTI   68 (359)
T ss_dssp             EEEEEETT-EEEEEEEEE-----EECTTCEEEEEESTTSSHHHHHHHHHTSSC-----CSEEEEEETTEEE
T ss_pred             eEEEEECC-EEEEEeeEE-----EEcCCCEEEEECCCCchHHHHHHHHhcCCC-----CCCcEEEECCEEC
Confidence            34667743 345566555     224577899999999999999999999887     889999 577776

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=98.87  E-value=1.8e-09  Score=94.99  Aligned_cols=60  Identities=13%  Similarity=0.094  Sum_probs=45.5

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      .++.|++ ...++++++     .-++|++++|+||||||||||++.|++.+.     +++|+| +.|.++..
T Consensus        10 l~~~y~~-~~~l~~vsl-----~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~   70 (224)
T 2pcj_A           10 IKKVIRG-YEILKGISL-----SVKKGEFVSIIGASGSGKSTLLYILGLLDA-----PTEGKVFLEGKEVDY   70 (224)
T ss_dssp             EEEEETT-EEEEEEEEE-----EEETTCEEEEEECTTSCHHHHHHHHTTSSC-----CSEEEEEETTEECCS
T ss_pred             EEEEECC-EeeEeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECCC
Confidence            4566754 345666665     224467899999999999999999998876     889999 67877653

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=98.87  E-value=5.9e-09  Score=94.21  Aligned_cols=61  Identities=20%  Similarity=0.244  Sum_probs=45.9

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTN   82 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~   82 (298)
                      .+..|+ +...++++++     .-++|++++|+||||||||||++.|++.+.     +++|+| +.|.++...
T Consensus        17 l~~~~~-~~~vL~~vsl-----~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~~~~   78 (266)
T 4g1u_C           17 LHYHVQ-QQALINDVSL-----HIASGEMVAIIGPNGAGKSTLLRLLTGYLS-----PSHGECHLLGQNLNSW   78 (266)
T ss_dssp             EEEEET-TEEEEEEEEE-----EEETTCEEEEECCTTSCHHHHHHHHTSSSC-----CSSCEEEETTEETTTS
T ss_pred             EEEEeC-CeeEEEeeEE-----EEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEECCcC
Confidence            345554 3445666655     224567899999999999999999998876     899999 688887643

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=98.84  E-value=2.3e-09  Score=101.42  Aligned_cols=142  Identities=13%  Similarity=0.116  Sum_probs=81.2

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC------C
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT------N   82 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t------~   82 (298)
                      ..++.|++ ...+.++++     .-++|++++|+||||||||||++.|++.+.     +++|+| +.|.++..      .
T Consensus         8 ~l~~~y~~-~~vl~~vsl-----~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~~~~~~~~~~~   76 (372)
T 1g29_1            8 DVWKVFGE-VTAVREMSL-----EVKDGEFMILLGPSGCGKTTTLRMIAGLEE-----PSRGQIYIGDKLVADPEKGIFV   76 (372)
T ss_dssp             EEEEEETT-EEEEEEEEE-----EEETTCEEEEECSTTSSHHHHHHHHHTSSC-----CSEEEEEETTEEEEEGGGTEEC
T ss_pred             eEEEEECC-EEEEeeeEE-----EEcCCCEEEEECCCCcHHHHHHHHHHcCCC-----CCccEEEECCEECccccccccC
Confidence            34667743 345566655     124567899999999999999999999877     889998 57766643      1


Q ss_pred             CCCHHHHcccccccccccCcCccchHHHHHHH-----------HHHhhHHHhh--------cCCceEEEchhH---HHHH
Q psy8556          83 KPSIIEREITPHHLIDIIEPTKSYSVIQFCED-----------ALFSIKNILK--------KKKLPLLVGGTM---LYFK  140 (298)
Q Consensus        83 kp~~~e~~~v~~~l~~~~~~~e~~s~~~f~~~-----------~~~~i~~i~~--------~~~~~IlvGGt~---~y~~  140 (298)
                      .+....+..+++..    .....+++.+....           ..+.+.++.+        ...+--++||..   ...+
T Consensus        77 ~~~~r~ig~v~Q~~----~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalAr  152 (372)
T 1g29_1           77 PPKDRDIAMVFQSY----ALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGR  152 (372)
T ss_dssp             CGGGSSEEEECSCC----CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred             CHhHCCEEEEeCCC----ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHH
Confidence            22111222333321    11122333222111           0111111111        122234788877   5678


Q ss_pred             HHHcc----CCCCCCC--CHHHHHHHHHHHHh
Q psy8556         141 ALRDG----INKLPPA--NLKLRTKFNIDINK  166 (298)
Q Consensus       141 ~ll~~----~~~~p~~--d~~lr~~l~~~~~~  166 (298)
                      +++..    +.|.|.+  |+..+..+.+.+.+
T Consensus       153 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~  184 (372)
T 1g29_1          153 AIVRKPQVFLMDEPLSNLDAKLRVRMRAELKK  184 (372)
T ss_dssp             HHHTCCSEEEEECTTTTSCHHHHHHHHHHHHH
T ss_pred             HHhcCCCEEEECCCCccCCHHHHHHHHHHHHH
Confidence            88866    4466754  88888887766543

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=98.84  E-value=3.3e-09  Score=100.02  Aligned_cols=142  Identities=13%  Similarity=0.068  Sum_probs=82.5

Q ss_pred             hhcccCchhh---hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCC
Q psy8556          10 RDTETDPQQR---QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPS   85 (298)
Q Consensus        10 ~~~~~~~~~~---~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~   85 (298)
                      ..+++|+.+.   ..++++++     .-++|++++|+||||||||||+++|++.+.     +++|+| +.|.++....+.
T Consensus        29 ~ls~~y~~~~~~~~aL~~vsl-----~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~-----p~~G~I~i~G~~i~~~~~~   98 (366)
T 3tui_C           29 NITKVFHQGTRTIQALNNVSL-----HVPAGQIYGVIGASGAGKSTLIRCVNLLER-----PTEGSVLVDGQELTTLSES   98 (366)
T ss_dssp             EEEEEEECSSSEEEEEEEEEE-----EECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECSSCCHH
T ss_pred             eEEEEeCCCCCCeEEEEeeEE-----EEcCCCEEEEEcCCCchHHHHHHHHhcCCC-----CCceEEEECCEECCcCCHH
Confidence            4567786542   34555555     225577999999999999999999999877     899999 688888654332


Q ss_pred             HH-----HHcccccccccccCcCccchHHHHHHH-----------HHHhhHHHhh-------cCC-ceEEEchhH---HH
Q psy8556          86 II-----EREITPHHLIDIIEPTKSYSVIQFCED-----------ALFSIKNILK-------KKK-LPLLVGGTM---LY  138 (298)
Q Consensus        86 ~~-----e~~~v~~~l~~~~~~~e~~s~~~f~~~-----------~~~~i~~i~~-------~~~-~~IlvGGt~---~y  138 (298)
                      ..     .+..++++.    .....+++.+....           ..+.+.++++       ..+ +--++||..   ..
T Consensus        99 ~~~~~r~~Ig~v~Q~~----~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaI  174 (366)
T 3tui_C           99 ELTKARRQIGMIFQHF----NLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAI  174 (366)
T ss_dssp             HHHHHHTTEEEECSSC----CCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHH
T ss_pred             HHHHHhCcEEEEeCCC----ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHH
Confidence            11     122233331    22223343332211           1111222211       112 224788876   46


Q ss_pred             HHHHHcc----CCCCCCC--CHHHHHHHHHHHH
Q psy8556         139 FKALRDG----INKLPPA--NLKLRTKFNIDIN  165 (298)
Q Consensus       139 ~~~ll~~----~~~~p~~--d~~lr~~l~~~~~  165 (298)
                      .+|++.+    +.|.|.+  |+..++.+.+.+.
T Consensus       175 ArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~  207 (366)
T 3tui_C          175 ARALASNPKVLLCDQATSALDPATTRSILELLK  207 (366)
T ss_dssp             HHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHH
T ss_pred             HHHHhcCCCEEEEECCCccCCHHHHHHHHHHHH
Confidence            6887765    4466754  7777777655543

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=98.82  E-value=6.8e-09  Score=97.78  Aligned_cols=142  Identities=17%  Similarity=0.179  Sum_probs=82.0

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHH
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIE   88 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e   88 (298)
                      ..++.|++ ...++++++     .-++|++++|+||||||||||++.|++.+.     +++|+| +.|.++....+....
T Consensus         8 ~l~~~y~~-~~vl~~vsl-----~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~~~~~~~r~   76 (359)
T 2yyz_A            8 NLKKYFGK-VKAVDGVSF-----EVKDGEFVALLGPSGCGKTTTLLMLAGIYK-----PTSGEIYFDDVLVNDIPPKYRE   76 (359)
T ss_dssp             EEEEEETT-EEEEEEEEE-----EECTTCEEEEECSTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTTSCGGGTT
T ss_pred             EEEEEECC-EEEEeeeEE-----EEcCCCEEEEEcCCCchHHHHHHHHHCCCC-----CCccEEEECCEECCCCChhhCc
Confidence            34667743 345555555     224577899999999999999999999877     899999 678777543332222


Q ss_pred             HcccccccccccCcCccchHHHHHH---------------HHHHhhHHH----hhcCCceEEEchhH---HHHHHHHcc-
Q psy8556          89 REITPHHLIDIIEPTKSYSVIQFCE---------------DALFSIKNI----LKKKKLPLLVGGTM---LYFKALRDG-  145 (298)
Q Consensus        89 ~~~v~~~l~~~~~~~e~~s~~~f~~---------------~~~~~i~~i----~~~~~~~IlvGGt~---~y~~~ll~~-  145 (298)
                      ...+++..    .....+++.+...               .+.+.++..    .....+--++||..   ...++++.+ 
T Consensus        77 ig~v~Q~~----~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P  152 (359)
T 2yyz_A           77 VGMVFQNY----ALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQP  152 (359)
T ss_dssp             EEEECSSC----CCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred             EEEEecCc----ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence            33333321    1112222222211               111112111    01112234788877   467888865 


Q ss_pred             ---CCCCCCC--CHHHHHHHHHHHHh
Q psy8556         146 ---INKLPPA--NLKLRTKFNIDINK  166 (298)
Q Consensus       146 ---~~~~p~~--d~~lr~~l~~~~~~  166 (298)
                         +.|.|.+  |+..+..+.+.+.+
T Consensus       153 ~lLLLDEP~s~LD~~~r~~l~~~l~~  178 (359)
T 2yyz_A          153 KVLLFDEPLSNLDANLRMIMRAEIKH  178 (359)
T ss_dssp             SEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCcccCCHHHHHHHHHHHHH
Confidence               4466754  88888887766543

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=98.81  E-value=1.4e-08  Score=91.74  Aligned_cols=59  Identities=14%  Similarity=0.166  Sum_probs=44.4

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|++ ...++++++     .-++|++++|+||||||||||++.|++.+.     +++|+| +.|.++.
T Consensus        30 l~~~y~~-~~vL~~vsl-----~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~i~   89 (263)
T 2olj_A           30 LKKSFGS-LEVLKGINV-----HIREGEVVVVIGPSGSGKSTFLRCLNLLED-----FDEGEIIIDGINLK   89 (263)
T ss_dssp             EEEEETT-EEEEEEEEE-----EECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEESS
T ss_pred             EEEEECC-EEEEEeeEE-----EEcCCCEEEEEcCCCCcHHHHHHHHHcCCC-----CCCcEEEECCEECC
Confidence            4556643 345555554     224577999999999999999999998876     889999 6887764

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.79  E-value=1.1e-08  Score=87.28  Aligned_cols=28  Identities=18%  Similarity=0.319  Sum_probs=25.7

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      ++|++++|+||||||||||++.|++.++
T Consensus         5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~~   32 (205)
T 3tr0_A            5 NKANLFIISAPSGAGKTSLVRALVKALA   32 (205)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            4688999999999999999999999875

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=98.79  E-value=1.3e-08  Score=90.64  Aligned_cols=56  Identities=23%  Similarity=0.234  Sum_probs=42.1

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .++.|++   .++++++   .  -++ ++++|+||||||||||++.|++.+.     +++|+| +.|.++.
T Consensus         7 l~~~y~~---~l~~isl---~--i~~-e~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~   63 (240)
T 2onk_A            7 AEKRLGN---FRLNVDF---E--MGR-DYCVLLGPTGAGKSVFLELIAGIVK-----PDRGEVRLNGADIT   63 (240)
T ss_dssp             EEEEETT---EEEEEEE---E--ECS-SEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECT
T ss_pred             EEEEeCC---EEeeeEE---E--ECC-EEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECC
Confidence            4566743   2455544   1  234 6899999999999999999999876     889999 6777764

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=98.79  E-value=2.3e-09  Score=100.82  Aligned_cols=60  Identities=13%  Similarity=0.158  Sum_probs=45.4

Q ss_pred             hhcccCchhhh--hhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          10 RDTETDPQQRQ--LTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        10 ~~~~~~~~~~~--~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      ..++.|++ ..  .++++++     .-++|++++|+||||||||||++.|++.+.     +++|+| +.|.++.
T Consensus         8 ~l~~~y~~-~~~~vl~~vsl-----~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~   70 (353)
T 1oxx_K            8 NVSKVFKK-GKVVALDNVNI-----NIENGERFGILGPSGAGKTTFMRIIAGLDV-----PSTGELYFDDRLVA   70 (353)
T ss_dssp             EEEEEEGG-GTEEEEEEEEE-----EECTTCEEEEECSCHHHHHHHHHHHHTSSC-----CSEEEEEETTEEEE
T ss_pred             eEEEEECC-EeeeeEeceEE-----EECCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEECc
Confidence            35677754 33  5666655     224567899999999999999999999877     889998 5776664

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=98.78  E-value=1e-08  Score=96.96  Aligned_cols=146  Identities=14%  Similarity=0.145  Sum_probs=81.6

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHH
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIE   88 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e   88 (298)
                      ..++.|++ ...+.++++     .-++|++++|+||||||||||++.|++.+.     +++|+| +.|.++....+....
T Consensus        16 ~l~~~y~~-~~vl~~vsl-----~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~~~~~~~r~   84 (372)
T 1v43_A           16 NLTKRFGN-FTAVNKLNL-----TIKDGEFLVLLGPSGCGKTTTLRMIAGLEE-----PTEGRIYFGDRDVTYLPPKDRN   84 (372)
T ss_dssp             EEEEEETT-EEEEEEEEE-----EECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTTSCGGGGT
T ss_pred             EEEEEECC-EEEEeeeEE-----EECCCCEEEEECCCCChHHHHHHHHHcCCC-----CCceEEEECCEECCCCChhhCc
Confidence            35667743 345556555     224577899999999999999999999877     899999 678777543332222


Q ss_pred             Hcccccc--cccccCcCccchH---------HHHHHHHHHhhHHH----hhcCCceEEEchhH---HHHHHHHcc----C
Q psy8556          89 REITPHH--LIDIIEPTKSYSV---------IQFCEDALFSIKNI----LKKKKLPLLVGGTM---LYFKALRDG----I  146 (298)
Q Consensus        89 ~~~v~~~--l~~~~~~~e~~s~---------~~f~~~~~~~i~~i----~~~~~~~IlvGGt~---~y~~~ll~~----~  146 (298)
                      ...+++.  ++..++..+++..         .+..+.+.+.++..    .....+--++||..   ...++++..    +
T Consensus        85 ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLL  164 (372)
T 1v43_A           85 ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLL  164 (372)
T ss_dssp             EEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEE
T ss_pred             EEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            3333332  1111121121110         11111111222111    01112234889976   467888865    4


Q ss_pred             CCCCCC--CHHHHHHHHHHHHh
Q psy8556         147 NKLPPA--NLKLRTKFNIDINK  166 (298)
Q Consensus       147 ~~~p~~--d~~lr~~l~~~~~~  166 (298)
                      .|.|.+  |+..+..+...+.+
T Consensus       165 LDEP~s~LD~~~r~~l~~~l~~  186 (372)
T 1v43_A          165 MDEPLSNLDAKLRVAMRAEIKK  186 (372)
T ss_dssp             EESTTTTSCHHHHHHHHHHHHH
T ss_pred             EcCCCccCCHHHHHHHHHHHHH
Confidence            466754  88888887766543

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.77  E-value=2.3e-08  Score=89.83  Aligned_cols=59  Identities=15%  Similarity=0.195  Sum_probs=45.0

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .++.|++ ...++++++     .-++|++++|+||||||||||++.|++.+.     +++|+| +.|.++.
T Consensus        21 l~~~y~~-~~vl~~vsl-----~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~~~   80 (256)
T 1vpl_A           21 LRKRIGK-KEILKGISF-----EIEEGEIFGLIGPNGAGKTTTLRIISTLIK-----PSSGIVTVFGKNVV   80 (256)
T ss_dssp             EEEEETT-EEEEEEEEE-----EECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEETT
T ss_pred             EEEEECC-EEEEEeeEE-----EEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECC
Confidence            4566743 345555555     224577899999999999999999998876     889999 6777765

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.75  E-value=1.2e-09  Score=94.73  Aligned_cols=92  Identities=18%  Similarity=0.256  Sum_probs=60.6

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccchHHHHH-
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQFC-  112 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~~~f~-  112 (298)
                      ..+|++++|+||||||||||++.|++.++..        +....+.+|.+|...+..++.+++++...+...+....|. 
T Consensus        16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~--------~~~~vs~TTR~p~~gE~~G~~y~fvs~~~f~~~i~~~~fle   87 (197)
T 3ney_A           16 FQGRKTLVLIGASGVGRSHIKNALLSQNPEK--------FVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFLE   87 (197)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHHHCTTT--------EECCCCEECSCCCTTCCTTSSCEECCHHHHHHHHHTTCEEE
T ss_pred             CCCCCEEEEECcCCCCHHHHHHHHHhhCCcc--------EEeeecccccCCcCCeeccccceeccHHHhhhhhhhhhhhh
Confidence            3578899999999999999999999887522        2223445677888777888888766543222111111111 


Q ss_pred             ---------HHHHHhhHHHhhcCCceEEEc
Q psy8556         113 ---------EDALFSIKNILKKKKLPLLVG  133 (298)
Q Consensus       113 ---------~~~~~~i~~i~~~~~~~IlvG  133 (298)
                               ......+.++.+.|+.+|+..
T Consensus        88 ~~~~~~n~YGt~~~~v~~~l~~G~~vildi  117 (197)
T 3ney_A           88 FGSYQGNMFGTKFETVHQIHKQNKIAILDI  117 (197)
T ss_dssp             EEEETTEEEEEEHHHHHHHHHTTCEEEEEC
T ss_pred             hhhhhceecccchhhHHHHHhcCCeEEEEE
Confidence                     112345677888899888754

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=98.73  E-value=5.3e-09  Score=92.70  Aligned_cols=62  Identities=19%  Similarity=0.103  Sum_probs=47.3

Q ss_pred             hcccCchhh---hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCC
Q psy8556          11 DTETDPQQR---QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTN   82 (298)
Q Consensus        11 ~~~~~~~~~---~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~   82 (298)
                      .+.+|+.+.   ..++++++     .-.+|++++|+||||||||||++.|++.+.     +++|+| +.|.++...
T Consensus         7 l~~~y~~~~~~~~~L~~isl-----~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~~~~   72 (235)
T 3tif_A            7 VTKTYKMGEEIIYALKNVNL-----NIKEGEFVSIMGPSGSGKSTMLNIIGCLDK-----PTEGEVYIDNIKTNDL   72 (235)
T ss_dssp             EEEEEEETTEEEEEEEEEEE-----EECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECTTC
T ss_pred             EEEEeCCCCcceeeEEeeeE-----EEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCceEEEECCEEcccC
Confidence            466776543   35666655     224577899999999999999999998877     899999 688777543

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=98.72  E-value=1.6e-08  Score=90.44  Aligned_cols=62  Identities=11%  Similarity=0.125  Sum_probs=44.5

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      .+..|++ ...++++++     .-++|++++|+||||||||||++.|++...   +.+++|+| +.|.++..
T Consensus         9 l~~~y~~-~~vl~~vsl-----~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~---~~p~~G~I~~~g~~~~~   71 (250)
T 2d2e_A            9 LWASIDG-ETILKGVNL-----VVPKGEVHALMGPNGAGKSTLGKILAGDPE---YTVERGEILLDGENILE   71 (250)
T ss_dssp             EEEEETT-EEEEEEEEE-----EEETTCEEEEECSTTSSHHHHHHHHHTCTT---CEEEEEEEEETTEECTT
T ss_pred             EEEEECC-EEEEeceEE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCceEEEECCEECCC
Confidence            4566753 445666655     224567899999999999999999998611   23788998 67877653

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=98.71  E-value=7.2e-09  Score=88.91  Aligned_cols=87  Identities=20%  Similarity=0.192  Sum_probs=57.5

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccchHHH--------
Q psy8556          39 KVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQ--------  110 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~~~--------  110 (298)
                      .|+|+||||||||||++.|...++..        +....+.+|..|.+.|..+..||+++.-.+......+.        
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~~~~~--------~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~   74 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAEYPDS--------FGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFS   74 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHCTTT--------EEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEET
T ss_pred             EEEEECCCCCCHHHHHHHHHHhCCCC--------eEEEEEEeccCCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEc
Confidence            48899999999999999998876521        32345567888889999999998876433221111111        


Q ss_pred             --HHHHHHHhhHHHhhcCCceEEEc
Q psy8556         111 --FCEDALFSIKNILKKKKLPLLVG  133 (298)
Q Consensus       111 --f~~~~~~~i~~i~~~~~~~IlvG  133 (298)
                        ++......+...+..|+.+|+..
T Consensus        75 g~~YGt~~~~v~~~l~~g~~vil~i   99 (186)
T 1ex7_A           75 GNYYGSTVASVKQVSKSGKTCILDI   99 (186)
T ss_dssp             TEEEEEEHHHHHHHHHHTSEEEEEC
T ss_pred             CceeeeecceeeehhhCCCEEEecC
Confidence              11122345666777788877754

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=98.68  E-value=6.7e-09  Score=92.42  Aligned_cols=61  Identities=15%  Similarity=0.157  Sum_probs=46.7

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      .+..|+++...+.++++     .-++|++++|+||||||||||++.|++.+.     +++|+| +.|.++..
T Consensus         7 l~~~y~~~~~vl~~vsl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~   68 (243)
T 1mv5_A            7 VDFAYDDSEQILRDISF-----EAQPNSIIAFAGPSGGGKSTIFSLLERFYQ-----PTAGEITIDGQPIDN   68 (243)
T ss_dssp             EEECSSSSSCSEEEEEE-----EECTTEEEEEECCTTSSHHHHHHHHTTSSC-----CSBSCEEETTEESTT
T ss_pred             EEEEeCCCCceEEEeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEhhh
Confidence            46677544556666665     224577899999999999999999998876     889999 67777643

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=98.67  E-value=6.9e-09  Score=90.89  Aligned_cols=57  Identities=18%  Similarity=0.224  Sum_probs=44.0

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDI   79 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i   79 (298)
                      .+..|++  ..+.++++     .-++|++++|+||||||||||++.|++.+.     +++|+| +.|.++
T Consensus        16 ls~~y~~--~il~~vsl-----~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~~   73 (214)
T 1sgw_A           16 LSVGYDK--PVLERITM-----TIEKGNVVNFHGPNGIGKTTLLKTISTYLK-----PLKGEIIYNGVPI   73 (214)
T ss_dssp             EEEESSS--EEEEEEEE-----EEETTCCEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEEG
T ss_pred             EEEEeCC--eEEeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEh
Confidence            4667765  56666666     123466899999999999999999998876     889999 577665

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.66  E-value=9e-09  Score=91.46  Aligned_cols=61  Identities=13%  Similarity=0.145  Sum_probs=45.7

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      ..+..|++ ...++++++     .-++|++++|+||||||||||++.|++.+.     +++|+| +.|.++..
T Consensus        11 ~l~~~y~~-~~vl~~vsl-----~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~   72 (240)
T 1ji0_A           11 SLHVYYGA-IHAIKGIDL-----KVPRGQIVTLIGANGAGKTTTLSAIAGLVR-----AQKGKIIFNGQDITN   72 (240)
T ss_dssp             EEEEEETT-EEEEEEEEE-----EEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECTT
T ss_pred             eEEEEECC-eeEEeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECCC
Confidence            34566754 345566555     224567899999999999999999998876     889999 67877653

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=98.65  E-value=9.7e-09  Score=94.72  Aligned_cols=61  Identities=20%  Similarity=0.282  Sum_probs=46.1

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      ++..||++...+.++++     .-++|++++|+||||||||||++.|++.+.     +++|+| +.|.++..
T Consensus        59 vs~~y~~~~~vL~~isl-----~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~-----p~~G~I~i~G~~i~~  120 (306)
T 3nh6_A           59 VHFSYADGRETLQDVSF-----TVMPGQTLALVGPSGAGKSTILRLLFRFYD-----ISSGCIRIDGQDISQ  120 (306)
T ss_dssp             EEEESSTTCEEEEEEEE-----EECTTCEEEEESSSCHHHHHHHHHHTTSSC-----CSEEEEEETTEETTS
T ss_pred             EEEEcCCCCceeeeeeE-----EEcCCCEEEEECCCCchHHHHHHHHHcCCC-----CCCcEEEECCEEccc
Confidence            34456544445555544     225677899999999999999999998887     889999 68888764

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=98.64  E-value=1e-08  Score=92.08  Aligned_cols=60  Identities=20%  Similarity=0.236  Sum_probs=45.3

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      ..+..|++ ...++++++     .-++|++++|+||||||||||++.|++.+.     +++|+| +.|.++.
T Consensus        12 ~l~~~y~~-~~vl~~vsl-----~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~   72 (257)
T 1g6h_A           12 NIVKYFGE-FKALDGVSI-----SVNKGDVTLIIGPNGSGKSTLINVITGFLK-----ADEGRVYFENKDIT   72 (257)
T ss_dssp             EEEEEETT-EEEEEEECC-----EEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECT
T ss_pred             eeEEEECC-EeeEeeeEE-----EEeCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECC
Confidence            34566743 345666655     224567899999999999999999998876     889999 6787765

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.62  E-value=1.3e-09  Score=95.50  Aligned_cols=28  Identities=21%  Similarity=0.248  Sum_probs=18.9

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHH-hhCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKIS-EYIP   62 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La-~~l~   62 (298)
                      ++|++++|+||||||||||++.|+ +.++
T Consensus        25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~   53 (231)
T 3lnc_A           25 SVGVILVLSSPSGCGKTTVANKLLEKQKN   53 (231)
T ss_dssp             ECCCEEEEECSCC----CHHHHHHC----
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence            678899999999999999999999 8765

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.62  E-value=5.7e-09  Score=88.16  Aligned_cols=55  Identities=13%  Similarity=0.157  Sum_probs=35.8

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccc
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLI   97 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~   97 (298)
                      .+|++++|+||||||||||++.|++.++..        ++..+..+|..|...+..++.++++
T Consensus         3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~--------~~~~i~~ttr~~~~ge~~g~~~~~~   57 (180)
T 1kgd_A            3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDR--------FAYPIPHTTRPPKKDEENGKNYYFV   57 (180)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHCTTT--------EECCCCEECSCC---CCBTTTBEEC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCCcc--------EEEeeeccCCCCCccccCCCeeEEe
Confidence            457899999999999999999999887511        1112333455565555555555543

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=98.61  E-value=1e-08  Score=91.61  Aligned_cols=63  Identities=14%  Similarity=0.144  Sum_probs=48.0

Q ss_pred             hhhcccCch-hhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556           9 DRDTETDPQ-QRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus         9 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      ...+..|++ +...++++++     .-++|++++|+||||||||||++.|++.+.     +++|+| +.|.++..
T Consensus        11 ~~l~~~y~~~~~~vl~~vsl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~i~g~~~~~   75 (247)
T 2ff7_A           11 RNIRFRYKPDSPVILDNINL-----SIKQGEVIGIVGRSGSGKSTLTKLIQRFYI-----PENGQVLIDGHDLAL   75 (247)
T ss_dssp             EEEEEESSTTSCEEEEEEEE-----EEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEETTT
T ss_pred             EEEEEEeCCCCcceeeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEhhh
Confidence            345778853 4556666666     224567899999999999999999998876     889999 68877653

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=98.56  E-value=5.2e-08  Score=87.87  Aligned_cols=137  Identities=22%  Similarity=0.125  Sum_probs=74.9

Q ss_pred             hcccCchh---hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCH
Q psy8556          11 DTETDPQQ---RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSI   86 (298)
Q Consensus        11 ~~~~~~~~---~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~   86 (298)
                      .+..|+++   ...+.++++     .-+ |++++|+||||||||||++.|++.+      +++|+| +.|.++... ...
T Consensus         7 l~~~y~~~~~~~~il~~vsl-----~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~------p~~G~I~~~g~~~~~~-~~~   73 (263)
T 2pjz_A            7 VGITLSGKGYERFSLENINL-----EVN-GEKVIILGPNGSGKTTLLRAISGLL------PYSGNIFINGMEVRKI-RNY   73 (263)
T ss_dssp             EEEEEEEETTEEEEEEEEEE-----EEC-SSEEEEECCTTSSHHHHHHHHTTSS------CCEEEEEETTEEGGGC-SCC
T ss_pred             EEEEeCCCCccceeEEeeeE-----EEC-CEEEEEECCCCCCHHHHHHHHhCCC------CCCcEEEECCEECcch-HHh
Confidence            45667542   345666555     224 5689999999999999999998653      578888 566655321 111


Q ss_pred             HHHc-ccccccccccCcCccchHHHHHHH-----------HHHhhHHH--h---hcCCceEEEchhH---HHHHHHHcc-
Q psy8556          87 IERE-ITPHHLIDIIEPTKSYSVIQFCED-----------ALFSIKNI--L---KKKKLPLLVGGTM---LYFKALRDG-  145 (298)
Q Consensus        87 ~e~~-~v~~~l~~~~~~~e~~s~~~f~~~-----------~~~~i~~i--~---~~~~~~IlvGGt~---~y~~~ll~~-  145 (298)
                      .... .+++..    ..  .+++.+....           +.+.++..  .   ....+--++||..   ...++++.+ 
T Consensus        74 ~~i~~~v~Q~~----~l--~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p  147 (263)
T 2pjz_A           74 IRYSTNLPEAY----EI--GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQP  147 (263)
T ss_dssp             TTEEECCGGGS----CT--TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCC
T ss_pred             hheEEEeCCCC----cc--CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence            1222 333321    11  2333322211           11122111  0   0111224678876   466888865 


Q ss_pred             ---CCCCCCC--CHHHHHHHHHHHHh
Q psy8556         146 ---INKLPPA--NLKLRTKFNIDINK  166 (298)
Q Consensus       146 ---~~~~p~~--d~~lr~~l~~~~~~  166 (298)
                         +.|.|.+  |+..++.+.+.+.+
T Consensus       148 ~lllLDEPts~LD~~~~~~l~~~L~~  173 (263)
T 2pjz_A          148 EIVGLDEPFENVDAARRHVISRYIKE  173 (263)
T ss_dssp             SEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred             CEEEEECCccccCHHHHHHHHHHHHH
Confidence               3466754  78777777665544

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=98.56  E-value=1.6e-07  Score=93.51  Aligned_cols=42  Identities=26%  Similarity=0.410  Sum_probs=36.7

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      ++|++++|+||||||||||++.|++.+.     +++|+| +.|.++..
T Consensus       367 ~~G~~~~ivG~sGsGKSTll~~l~g~~~-----p~~G~i~~~g~~~~~  409 (582)
T 3b5x_A          367 PQGKTVALVGRSGSGKSTIANLFTRFYD-----VDSGSICLDGHDVRD  409 (582)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCCEEEECCEEhhh
Confidence            5678999999999999999999998877     889999 68877653

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=98.56  E-value=1.7e-08  Score=91.40  Aligned_cols=60  Identities=22%  Similarity=0.238  Sum_probs=45.2

Q ss_pred             hcccCchh--hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQ--RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~--~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|+++  ...+.++++     .-++|++++|+||||||||||++.|++.+.     +++|+| +.|.++.
T Consensus        22 l~~~y~~~~~~~vl~~vsl-----~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~i~   84 (271)
T 2ixe_A           22 VSFAYPNHPNVQVLQGLTF-----TLYPGKVTALVGPNGSGKSTVAALLQNLYQ-----PTGGKVLLDGEPLV   84 (271)
T ss_dssp             EEECCTTCTTSCCEEEEEE-----EECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEEGG
T ss_pred             EEEEeCCCCCceeeEeeEE-----EECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCCEEEECCEEcc
Confidence            45667642  345555555     225577899999999999999999998876     889999 6777664

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=98.54  E-value=2e-08  Score=91.41  Aligned_cols=59  Identities=15%  Similarity=0.198  Sum_probs=44.8

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|++ ...++++++     .-++|++++|+||||||||||++.|++.+.     +++|+| +.|.++.
T Consensus        27 l~~~y~~-~~vL~~isl-----~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~~~   86 (279)
T 2ihy_A           27 IGRMKQG-KTILKKISW-----QIAKGDKWILYGLNGAGKTTLLNILNAYEP-----ATSGTVNLFGKMPG   86 (279)
T ss_dssp             EEEEETT-EEEEEEEEE-----EEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTBCCC
T ss_pred             EEEEECC-EEEEEeeeE-----EEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCeEEEECCEEcc
Confidence            4566754 345666655     224567899999999999999999998877     889999 6777764

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=98.54  E-value=1.7e-08  Score=91.05  Aligned_cols=60  Identities=17%  Similarity=0.117  Sum_probs=44.5

Q ss_pred             hcccCc-hh---hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDP-QQ---RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~-~~---~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|+ ++   ...++++++     .-++|++++|+||||||||||++.|++.+.     +++|+| +.|.++.
T Consensus         8 l~~~y~~~~~~~~~vl~~vsl-----~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~-----p~~G~I~~~g~~~~   72 (266)
T 2yz2_A            8 VSHIFHRGTPLEKKALENVSL-----VINEGECLLVAGNTGSGKSTLLQIVAGLIE-----PTSGDVLYDGERKK   72 (266)
T ss_dssp             EEEEESTTSTTCEEEEEEEEE-----EECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECC
T ss_pred             EEEEecCCCccccceeeeeEE-----EEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCcEEEECCEECc
Confidence            456675 22   345666555     224577899999999999999999998876     889998 5776653

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=98.53  E-value=2.4e-08  Score=88.03  Aligned_cols=55  Identities=18%  Similarity=0.154  Sum_probs=41.5

Q ss_pred             hhcccCch-hhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556          10 RDTETDPQ-QRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY   74 (298)
Q Consensus        10 ~~~~~~~~-~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy   74 (298)
                      ..+..|+. +...++++++     .-++|++++|+||||||||||++.|++.+.     +++|+|+
T Consensus        11 ~l~~~y~~~~~~il~~vsl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~   66 (229)
T 2pze_A           11 NVTAFWEEGGTPVLKDINF-----KIERGQLLAVAGSTGAGKTSLLMMIMGELE-----PSEGKIK   66 (229)
T ss_dssp             EEEECSSTTSCCSEEEEEE-----EEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEE
T ss_pred             EEEEEeCCCCceeeeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCc-----CCccEEE
Confidence            34667763 3456666665     124567899999999999999999998876     7788883

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=98.52  E-value=1.5e-07  Score=93.83  Aligned_cols=42  Identities=29%  Similarity=0.412  Sum_probs=36.9

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      ++|++++|+||||||||||++.|++.+.     +++|+| +.|.++..
T Consensus       367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~-----p~~G~i~~~g~~~~~  409 (582)
T 3b60_A          367 PAGKTVALVGRSGSGKSTIASLITRFYD-----IDEGHILMDGHDLRE  409 (582)
T ss_dssp             CTTCEEEEEECTTSSHHHHHHHHTTTTC-----CSEEEEEETTEETTT
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhhccC-----CCCCeEEECCEEccc
Confidence            5678999999999999999999999887     889999 68877753

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=98.51  E-value=4.6e-08  Score=88.09  Aligned_cols=59  Identities=14%  Similarity=0.074  Sum_probs=45.0

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|++ ...++++++     .-++|++++|+||||||||||++.|++.+.     +++|+| +.|.++.
T Consensus        12 l~~~y~~-~~vl~~vsl-----~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~   71 (262)
T 1b0u_A           12 LHKRYGG-HEVLKGVSL-----QARAGDVISIIGSSGSGKSTFLRCINFLEK-----PSEGAIIVNGQNIN   71 (262)
T ss_dssp             EEEEETT-EEEEEEEEE-----EECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECC
T ss_pred             EEEEECC-EEEEEeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEcc
Confidence            4566743 345666555     224577899999999999999999998876     889999 6787764

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=98.50  E-value=2.3e-08  Score=88.68  Aligned_cols=57  Identities=18%  Similarity=0.064  Sum_probs=41.8

Q ss_pred             hhcccCch-hhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-ecc
Q psy8556          10 RDTETDPQ-QRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCD   76 (298)
Q Consensus        10 ~~~~~~~~-~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g   76 (298)
                      ..+..|+. +...++++++     .-++|++++|+||||||||||++.|++.+.     +++|+| +.|
T Consensus         8 ~l~~~y~~~~~~vl~~vsl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g   66 (237)
T 2cbz_A            8 NATFTWARSDPPTLNGITF-----SIPEGALVAVVGQVGCGKSSLLSALLAEMD-----KVEGHVAIKG   66 (237)
T ss_dssp             EEEEESCTTSCCSEEEEEE-----EECTTCEEEEECSTTSSHHHHHHHHTTCSE-----EEEEEEEECS
T ss_pred             EEEEEeCCCCCceeeeeEE-----EECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECC
Confidence            34667764 3456666665     224577899999999999999999998775     677777 344

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=98.47  E-value=3.7e-08  Score=88.93  Aligned_cols=61  Identities=16%  Similarity=0.206  Sum_probs=43.5

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+..|+ +...+.++++     .-++|++++|+||||||||||++.|++...   ..+++|+| +.|.++.
T Consensus        26 l~~~y~-~~~vl~~vsl-----~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~---~~p~~G~I~~~g~~i~   87 (267)
T 2zu0_C           26 LHVSVE-DKAILRGLSL-----DVHPGEVHAIMGPNGSGKSTLSATLAGRED---YEVTGGTVEFKGKDLL   87 (267)
T ss_dssp             EEEEET-TEEEEEEEEE-----EECTTCEEEEECCTTSSHHHHHHHHHTCTT---CEEEEEEEEETTEEGG
T ss_pred             EEEEEC-CEEEEEeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCCeEEEECCEECC
Confidence            456664 3345555555     224577899999999999999999998631   23678888 6777664

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=98.44  E-value=4.6e-08  Score=87.64  Aligned_cols=54  Identities=15%  Similarity=-0.005  Sum_probs=40.4

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY   74 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy   74 (298)
                      .+..|+.+...++++++     .-++|++++|+||||||||||++.|++.+.     +++|+|+
T Consensus        10 l~~~y~~~~~vl~~isl-----~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~   63 (253)
T 2nq2_C           10 LGFYYQAENFLFQQLNF-----DLNKGDILAVLGQNGCGKSTLLDLLLGIHR-----PIQGKIE   63 (253)
T ss_dssp             EEEEETTTTEEEEEEEE-----EEETTCEEEEECCSSSSHHHHHHHHTTSSC-----CSEEEEE
T ss_pred             EEEEeCCCCeEEEEEEE-----EECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEE
Confidence            45667523455666665     224567899999999999999999998876     7778775

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=98.42  E-value=1.4e-07  Score=84.42  Aligned_cols=40  Identities=13%  Similarity=0.304  Sum_probs=34.1

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+|++++|+||||||||||++.|++.+.     ++ |+| +.|.++.
T Consensus        24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~-----p~-G~i~~~g~~~~   64 (249)
T 2qi9_C           24 RAGEILHLVGPNGAGKSTLLARMAGMTS-----GK-GSIQFAGQPLE   64 (249)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSSC-----CE-EEEEETTEEGG
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCCC-----CC-eEEEECCEECC
Confidence            4577899999999999999999998876     78 888 5776654

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=98.38  E-value=8.7e-08  Score=86.16  Aligned_cols=60  Identities=18%  Similarity=0.236  Sum_probs=43.2

Q ss_pred             hhcccCchh--hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          10 RDTETDPQQ--RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        10 ~~~~~~~~~--~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      ..+..|++.  ...++++++     .-++|++++|+||||||||||++.|++.+.     + +|+| +.|.++.
T Consensus        22 ~l~~~y~~~~~~~vl~~vsl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~-~G~I~i~g~~i~   84 (260)
T 2ghi_A           22 DVNFSYPKQTNHRTLKSINF-----FIPSGTTCALVGHTGSGKSTIAKLLYRFYD-----A-EGDIKIGGKNVN   84 (260)
T ss_dssp             EEEECCTTCCSSCSEEEEEE-----EECTTCEEEEECSTTSSHHHHHHHHTTSSC-----C-EEEEEETTEEGG
T ss_pred             EEEEEeCCCCcCceeEeeEE-----EECCCCEEEEECCCCCCHHHHHHHHhccCC-----C-CeEEEECCEEhh
Confidence            346677653  245566555     224577899999999999999999998765     3 6888 5776654

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=98.38  E-value=2.2e-07  Score=77.98  Aligned_cols=35  Identities=20%  Similarity=0.332  Sum_probs=31.2

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      .++.|+|+||+||||||+++.|++.++..+++.|.
T Consensus         4 ~~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~   38 (185)
T 3trf_A            4 NLTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDK   38 (185)
T ss_dssp             -CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChH
Confidence            46789999999999999999999999988887775

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.34  E-value=2.6e-07  Score=80.94  Aligned_cols=33  Identities=21%  Similarity=0.279  Sum_probs=25.8

Q ss_pred             cccccCCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          30 TGKLLFRKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        30 ~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      .-++.++|++++|+||||||||||++.|++.++
T Consensus         9 ~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A            9 HHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             ------CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             ccccCCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            334557899999999999999999999999876

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=98.33  E-value=1e-07  Score=90.60  Aligned_cols=62  Identities=15%  Similarity=0.147  Sum_probs=45.2

Q ss_pred             hhcccCch-hhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCC
Q psy8556          10 RDTETDPQ-QRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTN   82 (298)
Q Consensus        10 ~~~~~~~~-~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~   82 (298)
                      ..++.|++ +...++++++     .-++|++++|+||||||||||++.|++.+.      ++|+| +.|.++...
T Consensus        24 ~l~~~y~~~~~~~L~~vsl-----~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~------~~G~I~i~G~~i~~~   87 (390)
T 3gd7_A           24 DLTAKYTEGGNAILENISF-----SISPGQRVGLLGRTGSGKSTLLSAFLRLLN------TEGEIQIDGVSWDSI   87 (390)
T ss_dssp             EEEEESSSSSCCSEEEEEE-----EECTTCEEEEEESTTSSHHHHHHHHHTCSE------EEEEEEESSCBTTSS
T ss_pred             EEEEEecCCCeEEeeceeE-----EEcCCCEEEEECCCCChHHHHHHHHhCCCC------CCeEEEECCEECCcC
Confidence            34677764 3455666655     224567899999999999999999998652      57888 578877643

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=98.32  E-value=2.2e-07  Score=80.94  Aligned_cols=28  Identities=25%  Similarity=0.400  Sum_probs=25.0

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      ++|++++|+||||||||||++.|++.++
T Consensus        21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~p   48 (218)
T 1z6g_A           21 NNIYPLVICGPSGVGKGTLIKKLLNEFP   48 (218)
T ss_dssp             -CCCCEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            5688999999999999999999999874

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=98.32  E-value=2.1e-07  Score=79.83  Aligned_cols=37  Identities=24%  Similarity=0.391  Sum_probs=31.2

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHhhCC--CeEeecCC
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISEYIP--CEIISIDS   70 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~--~~iis~Ds   70 (298)
                      +++|.+++|+||||||||||++.|++.++  ..+++.|.
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~   41 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDH   41 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGG
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCc
Confidence            46788999999999999999999999987  66777665

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.30  E-value=1.8e-07  Score=93.61  Aligned_cols=60  Identities=22%  Similarity=0.330  Sum_probs=44.5

Q ss_pred             cccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          12 TETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      +..|+++...++|+++     .-++|++++|+||||||||||++.|++.+.     +++|+| +.|.++..
T Consensus       361 ~~~y~~~~~~l~~isl-----~i~~G~~~~ivG~sGsGKSTll~~l~g~~~-----p~~G~i~~~g~~i~~  421 (598)
T 3qf4_B          361 WFSYDKKKPVLKDITF-----HIKPGQKVALVGPTGSGKTTIVNLLMRFYD-----VDRGQILVDGIDIRK  421 (598)
T ss_dssp             ECCSSSSSCSCCSEEE-----ECCTTCEEEEECCTTSSTTHHHHHHTTSSC-----CSEEEEEETTEEGGG
T ss_pred             EEECCCCCccccceEE-----EEcCCCEEEEECCCCCcHHHHHHHHhcCcC-----CCCeEEEECCEEhhh
Confidence            3445443334444443     225678999999999999999999999887     889999 68887754

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.30  E-value=8.3e-07  Score=79.01  Aligned_cols=40  Identities=20%  Similarity=0.468  Sum_probs=33.5

Q ss_pred             ccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556          33 LLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY   74 (298)
Q Consensus        33 ~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy   74 (298)
                      +++++.+|+|+||+||||||+++.|++.++...  +|+|.+|
T Consensus        23 m~~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~--~d~g~i~   62 (252)
T 4e22_A           23 MTAIAPVITVDGPSGAGKGTLCKALAESLNWRL--LDSGAIY   62 (252)
T ss_dssp             CTTTSCEEEEECCTTSSHHHHHHHHHHHTTCEE--EEHHHHH
T ss_pred             cCCCCcEEEEECCCCCCHHHHHHHHHHhcCCCc--CCCCcee
Confidence            346788999999999999999999998887554  5677776

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=98.25  E-value=6.9e-07  Score=74.37  Aligned_cols=39  Identities=15%  Similarity=0.131  Sum_probs=30.9

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDI   79 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i   79 (298)
                      ++|++++|+||||||||||++.|++.++      ++|.| +.|.++
T Consensus        31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l~------~~G~V~~~g~~i   70 (158)
T 1htw_A           31 EKAIMVYLNGDLGAGKTTLTRGMLQGIG------HQGNVKSPTYTL   70 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHTT------CCSCCCCCTTTC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhCC------CCCeEEECCEee
Confidence            5678999999999999999999998863      45666 345444

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=98.25  E-value=4.7e-07  Score=77.91  Aligned_cols=29  Identities=38%  Similarity=0.470  Sum_probs=25.5

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      -++|++++|+||||||||||++.|++.++
T Consensus        17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           17 AAVGRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             --CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            36688999999999999999999999885

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.24  E-value=4.9e-07  Score=97.96  Aligned_cols=59  Identities=17%  Similarity=0.259  Sum_probs=44.7

Q ss_pred             cCchhh--hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCC
Q psy8556          14 TDPQQR--QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTN   82 (298)
Q Consensus        14 ~~~~~~--~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~   82 (298)
                      .||+..  ..++|+++     .=++|+.++|+||||||||||++.|.+.+.     +++|+| ..|.++.+-
T Consensus      1085 ~Y~~~~~~~VL~~isl-----~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~-----p~~G~I~iDG~di~~i 1146 (1321)
T 4f4c_A         1085 AYPERPEIEILKGLSF-----SVEPGQTLALVGPSGCGKSTVVALLERFYD-----TLGGEIFIDGSEIKTL 1146 (1321)
T ss_dssp             CCTTSCSSCSEEEEEE-----EECTTCEEEEECSTTSSTTSHHHHHTTSSC-----CSSSEEEETTEETTTB
T ss_pred             eCCCCCCCccccceeE-----EECCCCEEEEECCCCChHHHHHHHHhcCcc-----CCCCEEEECCEEhhhC
Confidence            455432  34555554     124567899999999999999999999887     899999 689888743

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.23  E-value=6.5e-07  Score=76.52  Aligned_cols=35  Identities=23%  Similarity=0.361  Sum_probs=29.3

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISID   69 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~D   69 (298)
                      ++|++++|+||+||||||+++.|++.++...++.|
T Consensus        27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d   61 (200)
T 4eun_A           27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEAD   61 (200)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGG
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEccc
Confidence            56889999999999999999999998875555444

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=98.23  E-value=3.9e-07  Score=83.27  Aligned_cols=35  Identities=23%  Similarity=0.280  Sum_probs=31.0

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY   74 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy   74 (298)
                      ++|++++|+||||||||||++.|++.+.     +++|+|+
T Consensus        62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~-----p~~G~I~   96 (290)
T 2bbs_A           62 ERGQLLAVAGSTGAGKTSLLMMIMGELE-----PSEGKIK   96 (290)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHTTSSC-----EEEEEEE
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEE
Confidence            6788999999999999999999998876     6777774

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.22  E-value=3.9e-07  Score=78.44  Aligned_cols=29  Identities=24%  Similarity=0.324  Sum_probs=26.6

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      .++|++++|+||||||||||++.|++.++
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~   47 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALS   47 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            46789999999999999999999999875

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.22  E-value=8.6e-07  Score=73.68  Aligned_cols=36  Identities=22%  Similarity=0.337  Sum_probs=30.8

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      .++.+++|+||+||||||+++.|++.++..+++.|.
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~   41 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDF   41 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGG
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCcc
Confidence            457899999999999999999999988766666554

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.20  E-value=7e-07  Score=73.89  Aligned_cols=33  Identities=24%  Similarity=0.536  Sum_probs=28.9

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIPCEIISID   69 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~D   69 (298)
                      +.+|+|+||+||||||+++.|++.++..+++.|
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d   36 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSD   36 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCEEecc
Confidence            568999999999999999999999987666554

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=98.19  E-value=3.4e-07  Score=91.18  Aligned_cols=42  Identities=21%  Similarity=0.304  Sum_probs=36.8

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      ++|++++|+||||||||||++.|++.+.     +++|+| +.|.++..
T Consensus       365 ~~G~~~~ivG~sGsGKSTll~~l~g~~~-----p~~G~i~~~g~~~~~  407 (578)
T 4a82_A          365 EKGETVAFVGMSGGGKSTLINLIPRFYD-----VTSGQILIDGHNIKD  407 (578)
T ss_dssp             CTTCEEEEECSTTSSHHHHHTTTTTSSC-----CSEEEEEETTEEGGG
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhcCCC-----CCCcEEEECCEEhhh
Confidence            5678999999999999999999998887     889999 68877753

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.18  E-value=7.2e-07  Score=76.15  Aligned_cols=36  Identities=14%  Similarity=0.265  Sum_probs=31.3

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      .++++|+|+||+||||||+++.|++.++..+++.|.
T Consensus        23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~   58 (199)
T 3vaa_A           23 NAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDW   58 (199)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHH
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchH
Confidence            456789999999999999999999999888877764

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.17  E-value=6e-07  Score=89.97  Aligned_cols=52  Identities=10%  Similarity=-0.019  Sum_probs=40.4

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV   73 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv   73 (298)
                      .+..|+...+.+..+.      ...+|++++|+||||||||||++.|++.+.     +++|.|
T Consensus        83 ~~~~Y~~~~~~l~~l~------~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~-----P~~G~i  134 (608)
T 3j16_B           83 VTHRYSANSFKLHRLP------TPRPGQVLGLVGTNGIGKSTALKILAGKQK-----PNLGRF  134 (608)
T ss_dssp             EEEECSTTSCEEECCC------CCCTTSEEEEECCTTSSHHHHHHHHHTSSC-----CCTTTT
T ss_pred             eEEEECCCceeecCCC------CCCCCCEEEEECCCCChHHHHHHHHhcCCC-----CCCceE
Confidence            4667776665444444      346788999999999999999999999876     777765

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.17  E-value=1e-06  Score=74.03  Aligned_cols=28  Identities=21%  Similarity=0.291  Sum_probs=25.1

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      ++|++++|+||||||||||++.|++.++
T Consensus         7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~   34 (191)
T 1zp6_A            7 LGGNILLLSGHPGSGKSTIAEALANLPG   34 (191)
T ss_dssp             CTTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHhccC
Confidence            4578999999999999999999998754

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.15  E-value=5.6e-07  Score=89.78  Aligned_cols=42  Identities=33%  Similarity=0.382  Sum_probs=36.9

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      ++|++++|+||||||||||++.|++.+.     +++|+| +.|.++..
T Consensus       367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~~-----~~~G~i~i~g~~i~~  409 (587)
T 3qf4_A          367 KPGSLVAVLGETGSGKSTLMNLIPRLID-----PERGRVEVDELDVRT  409 (587)
T ss_dssp             CTTCEEEEECSSSSSHHHHHHTTTTSSC-----CSEEEEEESSSBGGG
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCcc-----CCCcEEEECCEEccc
Confidence            5678999999999999999999998887     889999 68887754

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=98.14  E-value=1.1e-06  Score=75.01  Aligned_cols=38  Identities=29%  Similarity=0.299  Sum_probs=32.1

Q ss_pred             ccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          33 LLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        33 ~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      +..++.+|+|+|++||||||+++.|++.++..+++.|.
T Consensus        14 m~~~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~   51 (202)
T 3t61_A           14 VRRFPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDA   51 (202)
T ss_dssp             -CCCSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGG
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCc
Confidence            33456789999999999999999999999888887775

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=98.12  E-value=1e-06  Score=79.16  Aligned_cols=40  Identities=28%  Similarity=0.361  Sum_probs=32.2

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecC-CceE-eccccC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISID-SALV-YCDMDI   79 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~D-s~qv-y~g~~i   79 (298)
                      +++++++|+||||||||||++.|++.++     ++ +|.| +.|.++
T Consensus        23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~-----~~~~G~I~~~g~~i   64 (261)
T 2eyu_A           23 RKMGLILVTGPTGSGKSTTIASMIDYIN-----QTKSYHIITIEDPI   64 (261)
T ss_dssp             CSSEEEEEECSTTCSHHHHHHHHHHHHH-----HHCCCEEEEEESSC
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHhCC-----CCCCCEEEEcCCcc
Confidence            5688999999999999999999998865     55 6776 455444

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=98.10  E-value=4.7e-07  Score=78.71  Aligned_cols=33  Identities=33%  Similarity=0.341  Sum_probs=28.9

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV   73 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv   73 (298)
                      ++|++++|+||||||||||++.|++. .     +++|+|
T Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-~-----p~~G~I   52 (208)
T 3b85_A           20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-A-----LQSKQV   52 (208)
T ss_dssp             HHCSEEEEECCTTSSTTHHHHHHHHH-H-----HHTTSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcC-C-----CcCCee
Confidence            34789999999999999999999988 6     677777

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=98.10  E-value=1.6e-06  Score=76.56  Aligned_cols=28  Identities=43%  Similarity=0.516  Sum_probs=25.7

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      ++|.+|+|+||||||||||++.|++.++
T Consensus        23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG   50 (245)
T 2jeo_A           23 MRPFLIGVSGGTASGKSTVCEKIMELLG   50 (245)
T ss_dssp             CCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            5678999999999999999999999875

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=98.09  E-value=1.5e-06  Score=75.12  Aligned_cols=37  Identities=22%  Similarity=0.486  Sum_probs=30.8

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEec
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYC   75 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~   75 (298)
                      +.+|+|+||+||||||+++.|++.++...++  +|.+|+
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d--~g~i~~   41 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQWHLLD--SGAIYR   41 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEE--HHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCccc--Ccceee
Confidence            5689999999999999999999998876654  445664

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=98.09  E-value=1.2e-06  Score=80.51  Aligned_cols=33  Identities=21%  Similarity=0.485  Sum_probs=28.7

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHhhCCCeEe
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISEYIPCEII   66 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~ii   66 (298)
                      -++|++++|+||||||||||++.|++.+.|.|+
T Consensus       123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I~  155 (305)
T 2v9p_A          123 IPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVL  155 (305)
T ss_dssp             CTTCSEEEEECSSSSSHHHHHHHHHHHHTCEEE
T ss_pred             ecCCCEEEEECCCCCcHHHHHHHHhhhcCceEE
Confidence            367889999999999999999999998865554

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=98.08  E-value=1.6e-06  Score=79.64  Aligned_cols=41  Identities=17%  Similarity=0.254  Sum_probs=34.3

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccC
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDI   79 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i   79 (298)
                      ..+|++++|+|||||||||+++.|++.+.     +++|.| +.+.++
T Consensus        97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~-----~~~g~V~l~g~d~  138 (302)
T 3b9q_A           97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLK-----NEGTKVLMAAGDT  138 (302)
T ss_dssp             SSSCEEEEEECCTTSCHHHHHHHHHHHHH-----HTTCCEEEECCCC
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHHHHHHHH-----HcCCeEEEEeecc
Confidence            36789999999999999999999999875     677777 466554

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=98.07  E-value=2e-05  Score=69.89  Aligned_cols=30  Identities=10%  Similarity=0.119  Sum_probs=26.7

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHhhCCC
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISEYIPC   63 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~~   63 (298)
                      ..+|.+|+|+|++||||||+++.|++.++.
T Consensus        29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~   58 (253)
T 2p5t_B           29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQG   58 (253)
T ss_dssp             CSSCEEEEEESCGGGTTHHHHHHHHHHTTT
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            355789999999999999999999999863

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.07  E-value=1.8e-06  Score=79.30  Aligned_cols=40  Identities=23%  Similarity=0.354  Sum_probs=34.1

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      +|++++|+|||||||||+++.|++.+.     +++|.| +.+.++.
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~-----~~~g~V~l~g~D~~  141 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ-----NLGKKVMFCAGDTF  141 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHH-----TTTCCEEEECCCCS
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHH-----hcCCEEEEEeecCC
Confidence            688999999999999999999999876     677777 5666654

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=98.06  E-value=2e-06  Score=73.55  Aligned_cols=36  Identities=31%  Similarity=0.504  Sum_probs=32.3

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhC-CCeEeecCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYI-PCEIISIDS   70 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l-~~~iis~Ds   70 (298)
                      +++.+|+|+|++||||||+++.|++.+ +..+++.|.
T Consensus        19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~   55 (207)
T 2qt1_A           19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDD   55 (207)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCc
Confidence            557899999999999999999999988 678888886

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.06  E-value=3.4e-06  Score=91.40  Aligned_cols=44  Identities=18%  Similarity=0.283  Sum_probs=38.1

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNK   83 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~k   83 (298)
                      ++|+.++|+||||||||||++.|.+.+.     +++|+| ..|.++..-.
T Consensus       442 ~~G~~vaivG~sGsGKSTll~ll~~~~~-----~~~G~I~idG~~i~~~~  486 (1321)
T 4f4c_A          442 NAGQTVALVGSSGCGKSTIISLLLRYYD-----VLKGKITIDGVDVRDIN  486 (1321)
T ss_dssp             CTTCEEEEEECSSSCHHHHHHHHTTSSC-----CSEEEEEETTEETTTSC
T ss_pred             cCCcEEEEEecCCCcHHHHHHHhccccc-----cccCcccCCCccchhcc
Confidence            5677899999999999999999999988     889999 5888876433

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.05  E-value=1.3e-06  Score=74.55  Aligned_cols=34  Identities=24%  Similarity=0.285  Sum_probs=29.3

Q ss_pred             ccccccCCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          29 RTGKLLFRKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        29 ~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      +...+..+|.+|+|+|||||||||+++.|++.++
T Consensus        17 ~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~   50 (200)
T 3uie_A           17 RQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY   50 (200)
T ss_dssp             HHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3455567899999999999999999999999873

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=98.04  E-value=2.1e-06  Score=72.58  Aligned_cols=38  Identities=24%  Similarity=0.352  Sum_probs=31.2

Q ss_pred             cccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          32 KLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        32 ~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      .+++++.+|+|+|++||||||+++.|++. +..+++.|.
T Consensus         3 ~~~~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~   40 (203)
T 1uf9_A            3 HEAKHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDA   40 (203)
T ss_dssp             ---CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHH
T ss_pred             CcccCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccH
Confidence            44566789999999999999999999998 777887775

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.04  E-value=2e-06  Score=85.06  Aligned_cols=35  Identities=20%  Similarity=0.149  Sum_probs=30.7

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV   73 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv   73 (298)
                      +++|++++|+||||||||||++.|++.+.     +++|.+
T Consensus        22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~-----p~~G~i   56 (538)
T 3ozx_A           22 PKNNTILGVLGKNGVGKTTVLKILAGEII-----PNFGDP   56 (538)
T ss_dssp             CCTTEEEEEECCTTSSHHHHHHHHTTSSC-----CCTTCT
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCCcc
Confidence            46788999999999999999999998876     777765

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=98.02  E-value=3.6e-06  Score=80.43  Aligned_cols=38  Identities=18%  Similarity=0.091  Sum_probs=32.8

Q ss_pred             ccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          33 LLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        33 ~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      ...++.+|+|+|++||||||+++.|+..++..+|+.|.
T Consensus       254 ~~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~  291 (416)
T 3zvl_A          254 LSPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDT  291 (416)
T ss_dssp             CCSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGG
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccch
Confidence            34567899999999999999999999988877777765

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=98.01  E-value=2.5e-06  Score=78.25  Aligned_cols=29  Identities=24%  Similarity=0.252  Sum_probs=26.1

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      ..+|.+++|+||||||||||++.|++.++
T Consensus        77 ~~~g~iigI~G~~GsGKSTl~~~L~~~l~  105 (308)
T 1sq5_A           77 QRIPYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            36789999999999999999999999764

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.00  E-value=2e-06  Score=73.66  Aligned_cols=27  Identities=26%  Similarity=0.390  Sum_probs=23.4

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      +|++++|+||||||||||++.|++.++
T Consensus         3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            3 GPRPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            578899999999999999999998764

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.99  E-value=3.4e-06  Score=71.08  Aligned_cols=37  Identities=19%  Similarity=0.228  Sum_probs=32.0

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHhh-CCCeEeecCC
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISEY-IPCEIISIDS   70 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~~-l~~~iis~Ds   70 (298)
                      .+++.+|+|+|++||||||+++.|+.. ++..+++.|.
T Consensus         7 ~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~   44 (184)
T 1y63_A            7 QPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGK   44 (184)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHH
Confidence            345778999999999999999999999 6878887764

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=97.99  E-value=1.9e-06  Score=76.97  Aligned_cols=56  Identities=13%  Similarity=0.195  Sum_probs=38.3

Q ss_pred             cccCchhhhhhccccc-cccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          12 TETDPQQRQLTADFRR-IRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        12 ~~~~~~~~~~~~~~~~-~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      +++|.++..++.++++ +..-.   ++++|+|+|++||||||+++.|++.++..++..|.
T Consensus        25 ~~~~~~~~~~l~~~~~~i~~~l---~g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~   81 (250)
T 3nwj_A           25 HSPFDEEQQILKKKAEEVKPYL---NGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDT   81 (250)
T ss_dssp             -------CHHHHHHHHTTHHHH---TTCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHH
T ss_pred             eEEecCcchhhhhhhhhhhhhc---CCCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcH
Confidence            6677455678888877 33311   25679999999999999999999999877776553

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.99  E-value=3.6e-06  Score=69.11  Aligned_cols=33  Identities=36%  Similarity=0.385  Sum_probs=29.0

Q ss_pred             eEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          38 TKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      .+|+|+||+||||||+++.|++.++..+++.|.
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~   34 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSS   34 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcc
Confidence            379999999999999999999998877776663

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.98  E-value=2.7e-06  Score=71.12  Aligned_cols=35  Identities=23%  Similarity=0.340  Sum_probs=30.0

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISID   69 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~D   69 (298)
                      .+|.+|+|+|++||||||+++.|++.++..+++.|
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d   36 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTG   36 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHH
Confidence            35778999999999999999999998887777655

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.98  E-value=2.3e-06  Score=89.67  Aligned_cols=54  Identities=20%  Similarity=0.289  Sum_probs=38.9

Q ss_pred             cccCchh-hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEec
Q psy8556          12 TETDPQQ-RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYC   75 (298)
Q Consensus        12 ~~~~~~~-~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~   75 (298)
                      +..||++ ...+.++++     .-.+|++++|+||||||||||++.|++.+.     +++|.|+.
T Consensus       678 s~~Y~g~~~~iL~dVSl-----~I~~GeivaIiGpNGSGKSTLLklLaGll~-----P~sG~I~~  732 (986)
T 2iw3_A          678 EFQYPGTSKPQITDINF-----QCSLSSRIAVIGPNGAGKSTLINVLTGELL-----PTSGEVYT  732 (986)
T ss_dssp             EECCTTCSSCSEEEEEE-----EEETTCEEEECSCCCHHHHHHHHHHTTSSC-----CSEEEEEE
T ss_pred             EEEeCCCCceeeeccEE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEE
Confidence            3455532 334444444     224567899999999999999999998876     88888854

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=97.98  E-value=1.3e-06  Score=79.68  Aligned_cols=40  Identities=15%  Similarity=0.203  Sum_probs=30.7

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHhhCC-----CeEeecCCceEec
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISEYIP-----CEIISIDSALVYC   75 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~-----~~iis~Ds~qvy~   75 (298)
                      +.++.+|+|.||+||||||+++.|+..++     ..+|+.|+  +|+
T Consensus         2 s~~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~--~~r   46 (290)
T 1a7j_A            2 SKKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDA--FHR   46 (290)
T ss_dssp             CTTSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGG--GBS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecch--hhc
Confidence            45678999999999999999999998776     57888887  554

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.98  E-value=2.7e-06  Score=74.98  Aligned_cols=38  Identities=26%  Similarity=0.413  Sum_probs=29.1

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV   73 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv   73 (298)
                      ..++.+++|+|||||||||+++.|++.++...  +++|++
T Consensus        24 ~~~~~~i~l~G~~GsGKSTl~k~La~~lg~~~--~~~G~i   61 (246)
T 2bbw_A           24 ASKLLRAVILGPPGSGKGTVCQRIAQNFGLQH--LSSGHF   61 (246)
T ss_dssp             --CCCEEEEECCTTSSHHHHHHHHHHHHCCCC--EEHHHH
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHH
Confidence            34678999999999999999999997765332  455556

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=97.97  E-value=4.5e-06  Score=73.93  Aligned_cols=40  Identities=40%  Similarity=0.391  Sum_probs=32.4

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHhhCCCe----------EeecCCceEec
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISEYIPCE----------IISIDSALVYC   75 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~----------iis~Ds~qvy~   75 (298)
                      +.++.+|+|+|++||||||+++.|+..++..          +++.|.  +|+
T Consensus        19 ~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~--~~~   68 (252)
T 1uj2_A           19 GGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDS--FYR   68 (252)
T ss_dssp             --CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGG--GBC
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCc--ccc
Confidence            3456799999999999999999999988866          677776  555

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=97.97  E-value=3.3e-06  Score=79.35  Aligned_cols=41  Identities=17%  Similarity=0.254  Sum_probs=34.1

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccC
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDI   79 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i   79 (298)
                      .++|++++|+|||||||||+++.|++.+.     +++|.| +.+.++
T Consensus       154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~-----~~~G~V~l~g~D~  195 (359)
T 2og2_A          154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLK-----NEGTKVLMAAGDT  195 (359)
T ss_dssp             SSSSEEEEEECCTTSCHHHHHHHHHHHHH-----HTTCCEEEECCCC
T ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHhhcc-----ccCCEEEEecccc
Confidence            36789999999999999999999999875     667777 456554

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=97.96  E-value=4.3e-06  Score=81.46  Aligned_cols=39  Identities=15%  Similarity=0.185  Sum_probs=33.7

Q ss_pred             eEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          38 TKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      ++++|+||||||||||+++|++.+.     +++|.| +.|.++..
T Consensus        30 e~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~~~   69 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVTALI-----PDLTLLNFRNTTEAG   69 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHC-----CCTTTCCCCCTTSCS
T ss_pred             ceEEEECCCCCcHHHHHHHHhcCCC-----CCCCEEEECCEEccc
Confidence            7999999999999999999999876     788888 57766653

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.96  E-value=3.2e-06  Score=78.50  Aligned_cols=41  Identities=17%  Similarity=0.204  Sum_probs=34.4

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      ++|.+++|+|||||||||+++.|++.+.     +++|.| +.+.++.
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~-----~~~g~V~l~g~D~~  168 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWLK-----NHGFSVVIAASDTF  168 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEEEECCS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHH-----hcCCEEEEEeeccc
Confidence            5789999999999999999999998875     677777 4666654

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.96  E-value=3.8e-06  Score=71.88  Aligned_cols=29  Identities=24%  Similarity=0.486  Sum_probs=26.1

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      .-+|.+|+|+|||||||||+++.|+..++
T Consensus         9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A            9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence            35688999999999999999999998875

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.95  E-value=3.9e-06  Score=71.18  Aligned_cols=27  Identities=26%  Similarity=0.346  Sum_probs=25.0

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      ++|.+++|+|||||||||+++.|++.+
T Consensus         4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            4 EKGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            467899999999999999999999987

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=97.95  E-value=2.5e-06  Score=84.26  Aligned_cols=54  Identities=13%  Similarity=0.098  Sum_probs=38.8

Q ss_pred             hhhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE
Q psy8556           9 DRDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV   73 (298)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv   73 (298)
                      ...++.|++....+.+++      .-.+|++++|+||||||||||++.|++.+.     +++|.+
T Consensus        25 ~~ls~~yg~~~~~l~~vs------~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~-----p~~G~~   78 (538)
T 1yqt_A           25 EDCVHRYGVNAFVLYRLP------VVKEGMVVGIVGPNGTGKSTAVKILAGQLI-----PNLCGD   78 (538)
T ss_dssp             CCEEEECSTTCCEEECCC------CCCTTSEEEEECCTTSSHHHHHHHHHTSSC-----CCTTTT
T ss_pred             cCcEEEECCccccccCcC------cCCCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCcc
Confidence            346778864322233322      236788999999999999999999999876     677663

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.95  E-value=3.9e-06  Score=70.24  Aligned_cols=35  Identities=23%  Similarity=0.288  Sum_probs=30.7

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      +|.+|+|+|++||||||+++.|+..++..+++.|.
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~   36 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGE   36 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHH
Confidence            46789999999999999999999998888887764

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.95  E-value=4.1e-06  Score=70.44  Aligned_cols=27  Identities=26%  Similarity=0.413  Sum_probs=24.0

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCCC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIPC   63 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~~   63 (298)
                      |++++|+|||||||||+++.|++..++
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~~~~g   28 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAAQLDN   28 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred             CeEEEEECCCCCcHHHHHHHHhcccCC
Confidence            578999999999999999999986654

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.95  E-value=3.6e-06  Score=70.58  Aligned_cols=36  Identities=17%  Similarity=0.313  Sum_probs=31.1

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      +++.+|+|+|++||||||+++.|+..++..+++.|.
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~   38 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDA   38 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHH
Confidence            357899999999999999999999988877776654

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.94  E-value=6.3e-06  Score=70.02  Aligned_cols=38  Identities=16%  Similarity=0.144  Sum_probs=33.1

Q ss_pred             ccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          33 LLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        33 ~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      .+.++.+|+|+|++||||||+++.|++.++..+++.|.
T Consensus        11 ~~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~   48 (203)
T 1ukz_A           11 SPDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGD   48 (203)
T ss_dssp             CTTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHH
Confidence            34567799999999999999999999999988887774

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.93  E-value=3.6e-06  Score=77.95  Aligned_cols=37  Identities=24%  Similarity=0.327  Sum_probs=30.0

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHhhCC-------CeEeecCC
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISEYIP-------CEIISIDS   70 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~-------~~iis~Ds   70 (298)
                      ..++.+++|+||||||||||++.|++.+.       ..+++.|.
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~  132 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDG  132 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecc
Confidence            45678999999999999999999998864       23456665

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.93  E-value=4.2e-06  Score=69.89  Aligned_cols=24  Identities=33%  Similarity=0.367  Sum_probs=21.8

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHH
Q psy8556          35 FRKTKVAILGPTASGKSSVALKIS   58 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La   58 (298)
                      ++|++++|+||||||||||++.+.
T Consensus         7 ~~gei~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A            7 PELSLVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             ESSEEEEEECCTTSCHHHHHHHHS
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHc
Confidence            568899999999999999999864

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.92  E-value=6.8e-06  Score=68.16  Aligned_cols=30  Identities=17%  Similarity=0.334  Sum_probs=26.6

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCCCeEe
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIPCEII   66 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~~~ii   66 (298)
                      +.+|+|+|++||||||+++.|++.++...+
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~   32 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWL   32 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSSCEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCCeE
Confidence            578999999999999999999999875544

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.92  E-value=4.3e-06  Score=70.29  Aligned_cols=36  Identities=19%  Similarity=0.233  Sum_probs=31.7

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      +++.+|+|+|++||||||+++.|+..++..+++.|.
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~   42 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGD   42 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHH
Confidence            457799999999999999999999999888877664

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.92  E-value=5e-06  Score=70.93  Aligned_cols=32  Identities=22%  Similarity=0.386  Sum_probs=28.0

Q ss_pred             eEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          38 TKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      .+|+|+||+||||||+++.|++ ++..+++.|.
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~   34 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDADV   34 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH-CCCcccchHH
Confidence            5799999999999999999998 7777776665

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.91  E-value=4.8e-06  Score=70.79  Aligned_cols=31  Identities=26%  Similarity=0.470  Sum_probs=28.2

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          39 KVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      +|+|+|++||||||+++.|++ ++..+++.|.
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~   33 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDADK   33 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH-TTCEEEEHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH-CCCEEEEccH
Confidence            699999999999999999999 8888887775

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.91  E-value=4.6e-06  Score=76.83  Aligned_cols=29  Identities=21%  Similarity=0.221  Sum_probs=26.6

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      .++|.+++|+||||||||||++.|++.+.
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~  115 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALLA  115 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence            46799999999999999999999999874

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=97.90  E-value=4.8e-06  Score=82.28  Aligned_cols=35  Identities=29%  Similarity=0.346  Sum_probs=31.4

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY   74 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy   74 (298)
                      .+|++++|+||||||||||++.|++.+.     +++|.|+
T Consensus       292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~  326 (538)
T 3ozx_A          292 KEGEIIGILGPNGIGKTTFARILVGEIT-----ADEGSVT  326 (538)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSSC-----CSBCCEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEE
Confidence            5799999999999999999999998876     7788774

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.89  E-value=6e-06  Score=68.93  Aligned_cols=35  Identities=23%  Similarity=0.258  Sum_probs=30.8

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      .+.+|+|+|++||||||+++.|+..++..+++.|.
T Consensus         5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~   39 (194)
T 1qf9_A            5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGD   39 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHH
Confidence            35789999999999999999999998888887764

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=97.89  E-value=6.4e-06  Score=89.08  Aligned_cols=42  Identities=19%  Similarity=0.280  Sum_probs=37.1

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      ++|++++|+||||||||||++.|++.+.     +++|+| +.|.++..
T Consensus      1057 ~~Ge~v~ivG~sGsGKSTl~~~l~g~~~-----p~~G~I~i~g~~i~~ 1099 (1284)
T 3g5u_A         1057 KKGQTLALVGSSGCGKSTVVQLLERFYD-----PMAGSVFLDGKEIKQ 1099 (1284)
T ss_dssp             CSSSEEEEECSSSTTHHHHHHHHTTSSC-----CSEEEEESSSSCTTS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCCEEEECCEEccc
Confidence            5677899999999999999999999887     889999 58888764

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.89  E-value=5.3e-06  Score=73.43  Aligned_cols=43  Identities=23%  Similarity=0.333  Sum_probs=32.3

Q ss_pred             ccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccc
Q psy8556          33 LLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDM   77 (298)
Q Consensus        33 ~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~   77 (298)
                      |.+++.+|+|+||+||||||+++.|++.++..+++.+  .+|+..
T Consensus         5 m~~~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g--~~~r~~   47 (233)
T 3r20_A            5 MVSGSLVVAVDGPAGTGKSSVSRGLARALGARYLDTG--AMYRIA   47 (233)
T ss_dssp             ----CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHH--HHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCC--cHHHHH
Confidence            4456789999999999999999999999887765444  466543

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.88  E-value=5.9e-06  Score=68.33  Aligned_cols=33  Identities=27%  Similarity=0.188  Sum_probs=28.2

Q ss_pred             CeEEEEECCCchhHHHHHHHHHh-hCCCeEeecC
Q psy8556          37 KTKVAILGPTASGKSSVALKISE-YIPCEIISID   69 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~-~l~~~iis~D   69 (298)
                      +.+|+|+|++||||||+++.|++ .++..+++.|
T Consensus         2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d   35 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRD   35 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH
T ss_pred             CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHH
Confidence            46899999999999999999998 5676677665

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=97.87  E-value=5.1e-06  Score=83.22  Aligned_cols=53  Identities=15%  Similarity=0.338  Sum_probs=37.9

Q ss_pred             cCchhhhhhccccc-cccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCce
Q psy8556          14 TDPQQRQLTADFRR-IRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSAL   72 (298)
Q Consensus        14 ~~~~~~~~~~~~~~-~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~q   72 (298)
                      .||.....++++++ +..+.. .+|++++|+||||||||||++.|++.+.     +++|+
T Consensus       355 ~y~~~~~~l~~vsl~v~~G~~-~~GEiv~iiG~NGsGKSTLlk~l~Gl~~-----p~~G~  408 (608)
T 3j16_B          355 SYPSLKKTQGDFVLNVEEGEF-SDSEILVMMGENGTGKTTLIKLLAGALK-----PDEGQ  408 (608)
T ss_dssp             EECCEEEECSSCEEEECCEEC-CTTCEEEEESCTTSSHHHHHHHHHTSSC-----CSBCC
T ss_pred             EecCcccccCceEEEEecCcc-ccceEEEEECCCCCcHHHHHHHHhcCCC-----CCCCc
Confidence            34544444555555 444432 4578999999999999999999999876     66654

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=97.87  E-value=4.4e-06  Score=90.36  Aligned_cols=62  Identities=19%  Similarity=0.189  Sum_probs=45.1

Q ss_pred             hcccCchhh--hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCC
Q psy8556          11 DTETDPQQR--QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTN   82 (298)
Q Consensus        11 ~~~~~~~~~--~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~   82 (298)
                      ++.+||+..  ..++|+++     .-++|++++|+||||||||||++.|++.++     +++|+| +.|.++...
T Consensus       393 v~~~y~~~~~~~vL~~isl-----~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~-----~~~G~i~i~g~~i~~~  457 (1284)
T 3g5u_A          393 IHFSYPSRKEVQILKGLNL-----KVKSGQTVALVGNSGCGKSTTVQLMQRLYD-----PLDGMVSIDGQDIRTI  457 (1284)
T ss_dssp             EEECCSSTTSCCSEEEEEE-----EECTTCEEEEECCSSSSHHHHHHHTTTSSC-----CSEEEEEETTEEGGGS
T ss_pred             EEEEcCCCCCCcceecceE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEEHHhC
Confidence            344565432  34444444     225677899999999999999999998887     889999 578777543

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=97.86  E-value=4.5e-06  Score=83.63  Aligned_cols=53  Identities=11%  Similarity=0.091  Sum_probs=38.1

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV   73 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv   73 (298)
                      ..++.|++....+.+++      .-.+|++++|+||||||||||++.|++.+.     +++|.+
T Consensus        96 ~ls~~yg~~~~~l~~vs------~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~-----p~~G~~  148 (607)
T 3bk7_A           96 DCVHRYGVNAFVLYRLP------IVKDGMVVGIVGPNGTGKTTAVKILAGQLI-----PNLCED  148 (607)
T ss_dssp             SEEEECSTTCCEEECCC------CCCTTSEEEEECCTTSSHHHHHHHHTTSSC-----CCTTTT
T ss_pred             CeEEEECCCCeeeCCCC------CCCCCCEEEEECCCCChHHHHHHHHhCCCC-----CCCCcc
Confidence            35677754322333332      236788999999999999999999998876     677663

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=97.86  E-value=5e-06  Score=75.01  Aligned_cols=36  Identities=17%  Similarity=0.200  Sum_probs=22.8

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccC
Q psy8556          39 KVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDI   79 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i   79 (298)
                      .++|+||||||||||++.|++...     +++|.+ +.|.++
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~-----~~~G~i~~~g~~i   40 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQV-----SRKASSWNREEKI   40 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC-----------------C
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC-----CCCCccccCCccc
Confidence            589999999999999999999876     677777 455544

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=97.86  E-value=4.7e-06  Score=77.32  Aligned_cols=38  Identities=29%  Similarity=0.420  Sum_probs=31.6

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccc
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDM   77 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~   77 (298)
                      +++++++|+||||||||||++.|++.++     +++|.| +.|.
T Consensus       169 ~~g~~v~i~G~~GsGKTTll~~l~g~~~-----~~~g~i~i~~~  207 (330)
T 2pt7_A          169 AIGKNVIVCGGTGSGKTTYIKSIMEFIP-----KEERIISIEDT  207 (330)
T ss_dssp             HHTCCEEEEESTTSCHHHHHHHGGGGSC-----TTSCEEEEESS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCc-----CCCcEEEECCe
Confidence            3467899999999999999999999877     778887 4443

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.85  E-value=7.1e-06  Score=70.86  Aligned_cols=36  Identities=17%  Similarity=0.381  Sum_probs=31.3

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      +++.+|+|+|++||||||+++.|+..++..+++.|.
T Consensus         2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~   37 (220)
T 1aky_A            2 SESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGD   37 (220)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhH
Confidence            457789999999999999999999999888887754

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=97.85  E-value=5.3e-06  Score=69.36  Aligned_cols=33  Identities=21%  Similarity=0.459  Sum_probs=29.9

Q ss_pred             eEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          38 TKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      .+|+|+|++||||||+++.|++.++..+++.|.
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~   35 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDV   35 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCch
Confidence            469999999999999999999999988887775

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=97.85  E-value=6.2e-06  Score=77.39  Aligned_cols=35  Identities=26%  Similarity=0.428  Sum_probs=30.0

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY   74 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy   74 (298)
                      ++|++++|+||||||||||++.|++.++     +++|.|.
T Consensus       173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~-----~~~g~I~  207 (361)
T 2gza_A          173 QLERVIVVAGETGSGKTTLMKALMQEIP-----FDQRLIT  207 (361)
T ss_dssp             HTTCCEEEEESSSSCHHHHHHHHHTTSC-----TTSCEEE
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHhcCC-----CCceEEE
Confidence            3466899999999999999999999887     6777774

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=97.84  E-value=6.6e-06  Score=81.24  Aligned_cols=35  Identities=14%  Similarity=0.230  Sum_probs=31.2

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY   74 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy   74 (298)
                      .+|++++|+||||||||||++.|++.+.     +++|.|+
T Consensus       310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~-----p~~G~i~  344 (538)
T 1yqt_A          310 KKGEVIGIVGPNGIGKTTFVKMLAGVEE-----PTEGKIE  344 (538)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHHTSSC-----CSBCCCC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEE
Confidence            5789999999999999999999999876     7777775

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=97.84  E-value=6.7e-06  Score=82.39  Aligned_cols=35  Identities=17%  Similarity=0.234  Sum_probs=31.3

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY   74 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy   74 (298)
                      .+|++++|+||||||||||++.|++.+.     +++|+|+
T Consensus       380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~~-----p~~G~I~  414 (607)
T 3bk7_A          380 RKGEVIGIVGPNGIGKTTFVKMLAGVEE-----PTEGKVE  414 (607)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHHTSSC-----CSBSCCC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEE
Confidence            5789999999999999999999999876     7787774

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.84  E-value=8.7e-06  Score=66.46  Aligned_cols=31  Identities=26%  Similarity=0.309  Sum_probs=27.4

Q ss_pred             eEEEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556          38 TKVAILGPTASGKSSVALKISEYIPCEIISID   69 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~l~~~iis~D   69 (298)
                      .+|+|+||+||||||+++.| ..++..+++.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~   32 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMS   32 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHH
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHh
Confidence            47999999999999999999 88888877654

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.83  E-value=1e-05  Score=69.69  Aligned_cols=34  Identities=32%  Similarity=0.416  Sum_probs=29.9

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      ++.+|+|+|++||||||+++.|++ ++..+++.|.
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~   36 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDADI   36 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccH
Confidence            467999999999999999999998 7878877764

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.83  E-value=7.3e-06  Score=68.34  Aligned_cols=35  Identities=11%  Similarity=0.256  Sum_probs=30.6

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      ++.+|+|+|++||||||+++.|+..++..+++.|.
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~   44 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINVGD   44 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHH
Confidence            46789999999999999999999999877776664

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.83  E-value=9e-06  Score=69.11  Aligned_cols=37  Identities=30%  Similarity=0.421  Sum_probs=31.9

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      ..++.+|+|+|++||||||+++.|++.++..+++.|.
T Consensus        17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~   53 (201)
T 2cdn_A           17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGE   53 (201)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhH
Confidence            3556799999999999999999999998877877664

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=97.82  E-value=1.1e-05  Score=77.80  Aligned_cols=56  Identities=13%  Similarity=0.115  Sum_probs=40.6

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccc
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDM   77 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~   77 (298)
                      .++.|+.+...++++-++      .+|++++|+||||||||||++.|++...     +|+|.| ..|.
T Consensus       137 v~~~~~tg~~vld~vl~i------~~Gq~~~IvG~sGsGKSTLl~~Iag~~~-----~~~G~i~~~G~  193 (438)
T 2dpy_A          137 IEHVLDTGVRAINALLTV------GRGQRMGLFAGSGVGKSVLLGMMARYTR-----ADVIVVGLIGE  193 (438)
T ss_dssp             CCSBCCCSCHHHHHHSCC------BTTCEEEEEECTTSSHHHHHHHHHHHSC-----CSEEEEEEESC
T ss_pred             cceecCCCceEEeeeEEe------cCCCEEEEECCCCCCHHHHHHHHhcccC-----CCeEEEEEece
Confidence            455665444556666222      3467899999999999999999999987     677766 3443

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=97.81  E-value=8.7e-06  Score=79.47  Aligned_cols=41  Identities=15%  Similarity=0.109  Sum_probs=33.2

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccC
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDI   79 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i   79 (298)
                      ..+|.+++|+||||||||||++.|++.+.     .++|.| +.+.++
T Consensus       290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~-----~~~G~V~l~g~D~  331 (503)
T 2yhs_A          290 GKAPFVILMVGVNGVGKTTTIGKLARQFE-----QQGKSVMLAAGDT  331 (503)
T ss_dssp             SCTTEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEECCCT
T ss_pred             ccCCeEEEEECCCcccHHHHHHHHHHHhh-----hcCCeEEEecCcc
Confidence            46789999999999999999999998875     566777 344443

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.81  E-value=1e-05  Score=73.51  Aligned_cols=36  Identities=28%  Similarity=0.242  Sum_probs=29.6

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHhhCC--CeEeecC
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISEYIP--CEIISID   69 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~--~~iis~D   69 (298)
                      ..+|.+|+|+||+||||||+++.|+..++  ...||+|
T Consensus        30 ~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D   67 (287)
T 1gvn_B           30 VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDND   67 (287)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEech
Confidence            45578999999999999999999999883  4555554

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.80  E-value=8.5e-06  Score=70.02  Aligned_cols=27  Identities=19%  Similarity=0.327  Sum_probs=24.7

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      ++|++++|+||||||||||++.|++..
T Consensus        23 ~~G~~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           23 ETQAITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            568899999999999999999999854

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.80  E-value=1.2e-05  Score=67.16  Aligned_cols=35  Identities=26%  Similarity=0.519  Sum_probs=28.0

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhC---CCeEeecC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYI---PCEIISID   69 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l---~~~iis~D   69 (298)
                      .+|.+|+|+|++||||||+++.|++.+   +.+++..|
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d   40 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD   40 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEEC
Confidence            468899999999999999999999987   54444333

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=97.80  E-value=8.4e-06  Score=68.63  Aligned_cols=35  Identities=23%  Similarity=0.259  Sum_probs=31.0

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      ++.+|+|+|++||||||+++.|++.++..+++.|.
T Consensus        11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~   45 (199)
T 2bwj_A           11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGE   45 (199)
T ss_dssp             HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHH
Confidence            35789999999999999999999999888887764

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.80  E-value=7.9e-06  Score=67.91  Aligned_cols=32  Identities=22%  Similarity=0.347  Sum_probs=28.6

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          39 KVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      .|+|+||+||||||+++.|++.++..+++.|.
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~   37 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDLDLVFLDSDF   37 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTCEEEEHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCCCEEcccH
Confidence            58999999999999999999999888776664

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.79  E-value=7.6e-06  Score=68.31  Aligned_cols=33  Identities=12%  Similarity=0.260  Sum_probs=27.8

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCC-----CeEeecC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIP-----CEIISID   69 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~-----~~iis~D   69 (298)
                      +.+|+|.|++||||||+++.|+..++     ..+++.|
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~   40 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFG   40 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehH
Confidence            56899999999999999999999876     5555543

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=97.79  E-value=1.3e-05  Score=76.89  Aligned_cols=40  Identities=20%  Similarity=0.186  Sum_probs=32.0

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDI   79 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i   79 (298)
                      .++.+++|+||||||||||++.|++.++     +++|.| +.+.++
T Consensus       165 ~~ggii~I~GpnGSGKTTlL~allg~l~-----~~~g~I~~~ed~i  205 (418)
T 1p9r_A          165 RPHGIILVTGPTGSGKSTTLYAGLQELN-----SSERNILTVEDPI  205 (418)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHC-----CTTSCEEEEESSC
T ss_pred             hcCCeEEEECCCCCCHHHHHHHHHhhcC-----CCCCEEEEecccc
Confidence            4678999999999999999999998876     566666 344443

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=97.79  E-value=9.4e-06  Score=69.54  Aligned_cols=34  Identities=18%  Similarity=0.380  Sum_probs=31.3

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      ..+|+|+|++||||||+++.|+..++.+++++|.
T Consensus        12 ~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~   45 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDR   45 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcH
Confidence            4689999999999999999999988999998886

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.79  E-value=8.8e-06  Score=69.55  Aligned_cols=28  Identities=25%  Similarity=0.334  Sum_probs=25.4

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      ..++.+++|+||+||||||+++.|++.+
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~   46 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQTL   46 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4568899999999999999999999876

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.79  E-value=1.1e-05  Score=67.10  Aligned_cols=32  Identities=28%  Similarity=0.472  Sum_probs=23.3

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEe
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEII   66 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~ii   66 (298)
                      +++.+|+|+|++||||||+++.|++.++..++
T Consensus         3 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i   34 (183)
T 2vli_A            3 MRSPIIWINGPFGVGKTHTAHTLHERLPGSFV   34 (183)
T ss_dssp             --CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence            35779999999999999999999999886655

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.78  E-value=1.1e-05  Score=70.01  Aligned_cols=35  Identities=26%  Similarity=0.406  Sum_probs=30.5

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      ++.+|+|+|++||||||+++.|+..++...++.|.
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~   40 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGD   40 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechH
Confidence            46789999999999999999999999888887664

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.77  E-value=1.3e-05  Score=73.14  Aligned_cols=42  Identities=19%  Similarity=0.165  Sum_probs=28.2

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe----ccccCCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY----CDMDIGT   81 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy----~g~~i~t   81 (298)
                      ..+++++|+||||||||||++.|++...     +++|.|.    .|.++++
T Consensus       167 l~geiv~l~G~sG~GKSTll~~l~g~~~-----~~~G~i~~~~~~g~~~t~  212 (301)
T 1u0l_A          167 LKGKISTMAGLSGVGKSSLLNAINPGLK-----LRVSEVSEKLQRGRHTTT  212 (301)
T ss_dssp             HSSSEEEEECSTTSSHHHHHHHHSTTCC-----CC-------------CCC
T ss_pred             hcCCeEEEECCCCCcHHHHHHHhccccc-----ccccceecccCCCCCcee
Confidence            3578999999999999999999988776     7788884    5666543

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=97.76  E-value=1.1e-05  Score=66.56  Aligned_cols=33  Identities=15%  Similarity=0.366  Sum_probs=29.5

Q ss_pred             eEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          38 TKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      .+|+|+|++||||||+++.|+..++..+++.|.
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~   35 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDI   35 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCcEEcccH
Confidence            479999999999999999999999888887764

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=97.76  E-value=1.3e-05  Score=74.87  Aligned_cols=52  Identities=12%  Similarity=0.013  Sum_probs=37.9

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV   73 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv   73 (298)
                      .++.|+.+...++++-++      .+|++++|+||||||||||++.|++...     +|++.+
T Consensus        51 l~~~~~tg~~ald~ll~i------~~Gq~~gIiG~nGaGKTTLl~~I~g~~~-----~~~g~i  102 (347)
T 2obl_A           51 IDQPFILGVRAIDGLLTC------GIGQRIGIFAGSGVGKSTLLGMICNGAS-----ADIIVL  102 (347)
T ss_dssp             CCSEECCSCHHHHHHSCE------ETTCEEEEEECTTSSHHHHHHHHHHHSC-----CSEEEE
T ss_pred             cceecCCCCEEEEeeeee------cCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCEEEE
Confidence            345565444556666223      3467899999999999999999999986     566655

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.75  E-value=1.1e-05  Score=68.24  Aligned_cols=24  Identities=33%  Similarity=0.497  Sum_probs=22.5

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCC
Q psy8556          39 KVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      .++|+||||||||||++.|++.++
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~   25 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999999886

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.75  E-value=1.4e-05  Score=70.50  Aligned_cols=36  Identities=19%  Similarity=0.215  Sum_probs=31.7

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      +++.+|+|+||+||||||+++.|++.++...++.|.
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~   62 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGD   62 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHH
Confidence            467899999999999999999999998888887764

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=97.74  E-value=7e-06  Score=79.58  Aligned_cols=28  Identities=29%  Similarity=0.576  Sum_probs=25.7

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      ++|++++|+||||||||||++.|++.+.
T Consensus       136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~  163 (460)
T 2npi_A          136 FEGPRVVIVGGSQTGKTSLSRTLCSYAL  163 (460)
T ss_dssp             SSCCCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCccc
Confidence            4688999999999999999999999875

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=97.73  E-value=1.4e-05  Score=65.94  Aligned_cols=34  Identities=26%  Similarity=0.405  Sum_probs=30.0

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      -++|+|+|+.||||||+++.|+..++.++++.|.
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~   40 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDM   40 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHH
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHhCCCEEEChH
Confidence            3689999999999999999999999988887764

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=97.73  E-value=1.6e-05  Score=69.49  Aligned_cols=27  Identities=26%  Similarity=0.269  Sum_probs=24.9

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      .++|.+|+|.||+||||||+++.|++.
T Consensus        17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           17 GTQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence            367899999999999999999999887

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.72  E-value=9.5e-06  Score=68.32  Aligned_cols=25  Identities=20%  Similarity=0.433  Sum_probs=23.2

Q ss_pred             eEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          38 TKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      ++++|+|+||||||||++.|++.+.
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~   27 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILR   27 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhh
Confidence            5799999999999999999999875

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.72  E-value=9.3e-06  Score=67.80  Aligned_cols=27  Identities=19%  Similarity=0.288  Sum_probs=24.4

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      .+++.++|+||+|||||||++.+++.+
T Consensus        36 ~~g~~~~l~G~~G~GKTtL~~~i~~~~   62 (180)
T 3ec2_A           36 EEGKGLTFVGSPGVGKTHLAVATLKAI   62 (180)
T ss_dssp             GGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            447889999999999999999999876

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=97.72  E-value=1.6e-05  Score=67.35  Aligned_cols=32  Identities=41%  Similarity=0.479  Sum_probs=29.3

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          39 KVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      +|+|+|++||||||+++.|++.++..+++.|.
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~   35 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGL   35 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCceeccch
Confidence            89999999999999999999999888887765

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.71  E-value=2e-05  Score=72.10  Aligned_cols=41  Identities=20%  Similarity=0.212  Sum_probs=30.4

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-e---ccccCCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-Y---CDMDIGT   81 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y---~g~~i~t   81 (298)
                      ..+++++|+||||||||||++.|+ ...     +++|.| +   +|.++++
T Consensus       163 l~G~i~~l~G~sG~GKSTLln~l~-~~~-----~~~G~i~~~~~~G~~~t~  207 (302)
T 2yv5_A          163 LEGFICILAGPSGVGKSSILSRLT-GEE-----LRTQEVSEKTERGRHTTT  207 (302)
T ss_dssp             TTTCEEEEECSTTSSHHHHHHHHH-SCC-----CCCSCC---------CCC
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHH-Hhh-----CcccccccccCCCCCcee
Confidence            457899999999999999999998 765     778888 4   5665543

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=97.71  E-value=2e-05  Score=68.97  Aligned_cols=35  Identities=23%  Similarity=0.302  Sum_probs=30.9

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeec
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISEYIPCEIISI   68 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~   68 (298)
                      .+++++|+|+||.||||||.+..|++.++...||.
T Consensus        26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIst   60 (217)
T 3umf_A           26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSS   60 (217)
T ss_dssp             TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcH
Confidence            36788999999999999999999999998777654

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=97.70  E-value=1.8e-05  Score=69.29  Aligned_cols=41  Identities=29%  Similarity=0.410  Sum_probs=32.8

Q ss_pred             ccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEec
Q psy8556          33 LLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYC   75 (298)
Q Consensus        33 ~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~   75 (298)
                      -..++.+|+|+|++||||||+++.|++.++..+++.|.  +++
T Consensus        12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~--~~~   52 (236)
T 1q3t_A           12 DKMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGA--MYR   52 (236)
T ss_dssp             --CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHH--HHH
T ss_pred             cccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCC--eeE
Confidence            34667899999999999999999999988877765554  553

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.69  E-value=1.3e-05  Score=69.31  Aligned_cols=35  Identities=31%  Similarity=0.252  Sum_probs=29.7

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      ++.+|+|+||+||||||+++.|++.++...++.|.
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~   38 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGD   38 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHH
Confidence            45689999999999999999999999876665543

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.69  E-value=1.4e-05  Score=75.32  Aligned_cols=28  Identities=32%  Similarity=0.523  Sum_probs=25.6

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      +++.+++|+|||||||||+++.|++.++
T Consensus       134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~  161 (372)
T 2ewv_A          134 RKMGLILVTGPTGSGKSTTIASMIDYIN  161 (372)
T ss_dssp             SSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            5688999999999999999999998765

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.68  E-value=2e-05  Score=67.59  Aligned_cols=32  Identities=22%  Similarity=0.309  Sum_probs=28.7

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          39 KVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      .|+|+||+||||||+++.|++.++..+++.|.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~   33 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKYGIPHISTGD   33 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSSCCEEEHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEeHHH
Confidence            48899999999999999999999988887764

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.68  E-value=1.5e-05  Score=68.18  Aligned_cols=25  Identities=32%  Similarity=0.510  Sum_probs=23.0

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      |++++|+||||||||||++.|++.+
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhc
Confidence            4679999999999999999999876

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.67  E-value=1.4e-05  Score=74.83  Aligned_cols=26  Identities=38%  Similarity=0.486  Sum_probs=24.9

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      ++.++|+||||||||||++.|++.++
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~  195 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFN  195 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            78899999999999999999999987

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=97.67  E-value=3.4e-06  Score=74.36  Aligned_cols=37  Identities=16%  Similarity=0.206  Sum_probs=27.8

Q ss_pred             eEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccC
Q psy8556          38 TKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDI   79 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i   79 (298)
                      .+++|+||||||||||+.+|++.+.     +++|+| +.|.++
T Consensus        28 ~~~~i~GpnGsGKSTll~~i~g~~~-----~~~G~i~~~g~~~   65 (227)
T 1qhl_A           28 LVTTLSGGNGAGKSTTMAAFVTALI-----PDLTLLHFRNTTE   65 (227)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHHHHS-----CCTTTC-------
T ss_pred             cEEEEECCCCCCHHHHHHHHhcccc-----cCCCeEEECCEEc
Confidence            4689999999999999999999876     778887 566555

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.67  E-value=1.8e-05  Score=67.83  Aligned_cols=32  Identities=25%  Similarity=0.333  Sum_probs=28.5

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          39 KVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      .|+|+||+||||||+++.|++.++..+++.|.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~   33 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKYEIPHISTGD   33 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCEEEHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEeeHHH
Confidence            48899999999999999999999888887764

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=97.66  E-value=1.7e-05  Score=68.54  Aligned_cols=35  Identities=20%  Similarity=0.277  Sum_probs=30.8

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      ++..|+|+|+.||||||+++.|+..++..+++.|.
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~   38 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGD   38 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCceEEehhH
Confidence            45679999999999999999999999988887764

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.66  E-value=2e-05  Score=64.62  Aligned_cols=32  Identities=25%  Similarity=0.417  Sum_probs=28.7

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          39 KVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      .|+|+|++||||||+++.|+..++..+++.|.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~   33 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDE   33 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHHTCCEEEHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCEEECcH
Confidence            58999999999999999999988888877664

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=97.65  E-value=2.1e-05  Score=71.14  Aligned_cols=37  Identities=32%  Similarity=0.335  Sum_probs=31.6

Q ss_pred             ccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          33 LLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        33 ~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      .+.++.+|+|+|++||||||+++.|+ .++..+|++|.
T Consensus        71 ~~~~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~  107 (281)
T 2f6r_A           71 LPSGLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDH  107 (281)
T ss_dssp             SCTTCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhH
Confidence            34567899999999999999999999 56888888875

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.62  E-value=3.1e-05  Score=65.40  Aligned_cols=31  Identities=32%  Similarity=0.441  Sum_probs=26.7

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCC-CeEe
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIP-CEII   66 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~-~~ii   66 (298)
                      +|.+|+|.|+.||||||+++.|++.++ ..++
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~   34 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIK   34 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEE
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceE
Confidence            578999999999999999999999883 3444

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.61  E-value=1.7e-05  Score=72.99  Aligned_cols=42  Identities=19%  Similarity=0.233  Sum_probs=23.9

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe----ccccCCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY----CDMDIGT   81 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy----~g~~i~t   81 (298)
                      .+|++++|+||||||||||++.|++...     +++|.|.    +|.++++
T Consensus       171 ~~G~~~~lvG~sG~GKSTLln~L~g~~~-----~~~G~I~~~~~~G~~tt~  216 (307)
T 1t9h_A          171 FQDKTTVFAGQSGVGKSSLLNAISPELG-----LRTNEISEHLGRGKHTTR  216 (307)
T ss_dssp             GTTSEEEEEESHHHHHHHHHHHHCC------------------------CC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHhccccc-----ccccceeeecCCCccccc
Confidence            4578999999999999999999987654     6677774    5555543

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.61  E-value=2.7e-05  Score=70.97  Aligned_cols=37  Identities=27%  Similarity=0.203  Sum_probs=30.3

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHhhCC-------CeEe-ecCC
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISEYIP-------CEII-SIDS   70 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~-------~~ii-s~Ds   70 (298)
                      .+++.+|+|+||||||||||++.|++.++       ..++ +.|+
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~   72 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDD   72 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGG
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccc
Confidence            35688999999999999999999998875       2334 7776

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=97.61  E-value=1.9e-05  Score=72.61  Aligned_cols=45  Identities=20%  Similarity=0.140  Sum_probs=35.9

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCC---CeEeecCCceE-eccccCC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIP---CEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~---~~iis~Ds~qv-y~g~~i~   80 (298)
                      +-++++|+|++|||||||++.|++...   ..+|..|.|.| ..|..+.
T Consensus         3 ~i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~   51 (318)
T 1nij_A            3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIG   51 (318)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEEC
T ss_pred             cccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHh
Confidence            457899999999999999999998763   35677888888 5665553

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=97.60  E-value=2.8e-05  Score=74.39  Aligned_cols=34  Identities=26%  Similarity=0.201  Sum_probs=28.7

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY   74 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy   74 (298)
                      ++.+++|+||||||||||++.|++...     +++|.+.
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~Gl~~-----p~~GsI~  101 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRGIGN-----EEEGAAK  101 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCT-----TSTTSCC
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCCCC-----ccCceEE
Confidence            345899999999999999999998776     6777773

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=97.59  E-value=2.3e-05  Score=72.85  Aligned_cols=40  Identities=23%  Similarity=0.230  Sum_probs=30.9

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDI   79 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i   79 (298)
                      .++.+++|+||||||||||++.|++.+.     ++++.| +.+.++
T Consensus        53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~-----~~~g~v~i~~~d~   93 (337)
T 2qm8_A           53 GRAIRVGITGVPGVGKSTTIDALGSLLT-----AAGHKVAVLAVDP   93 (337)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHHH-----HTTCCEEEEEECG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhhh-----hCCCEEEEEEEcC
Confidence            5688999999999999999999998764     455555 344443

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=97.57  E-value=1.6e-05  Score=79.56  Aligned_cols=66  Identities=21%  Similarity=0.220  Sum_probs=34.3

Q ss_pred             HhhhcccCchhh-hhhccc---cccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeec-CCceE-eccccC
Q psy8556           8 LDRDTETDPQQR-QLTADF---RRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISI-DSALV-YCDMDI   79 (298)
Q Consensus         8 ~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~-Ds~qv-y~g~~i   79 (298)
                      +...+..|+++. .+++..   +....+..- .-+.++|+||||||||||++.|++.+.     + ++|.| +.|.++
T Consensus        13 ~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l-~lp~iaIvG~nGsGKSTLL~~I~Gl~~-----P~~sG~vt~~g~~i   84 (608)
T 3szr_A           13 ENNLCSQYEEKVRPCIDLIDSLRALGVEQDL-ALPAIAVIGDQSSGKSSVLEALSGVAL-----PRGSGIVTRCPLVL   84 (608)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHSCCSSC-CCCCEECCCCTTSCHHHHHHHHHSCC------------CCCSCEEE
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhCCCCCcc-cCCeEEEECCCCChHHHHHHHHhCCCC-----CCCCCeEEEcCEEE
Confidence            345677786653 444433   333322221 223499999999999999999998753     4 67777 466554

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.57  E-value=1.6e-05  Score=67.67  Aligned_cols=32  Identities=22%  Similarity=0.273  Sum_probs=26.9

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEe
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEII   66 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~ii   66 (298)
                      ++|.+|+|+|++||||||+++.|++.++...+
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~   39 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNV   39 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence            45789999999999999999999988764333

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=97.56  E-value=3.6e-05  Score=64.29  Aligned_cols=31  Identities=29%  Similarity=0.328  Sum_probs=26.9

Q ss_pred             EEEEECCCchhHHHHHHHHHhhC---CCeEeecC
Q psy8556          39 KVAILGPTASGKSSVALKISEYI---PCEIISID   69 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l---~~~iis~D   69 (298)
                      +|+|.|+.||||||+++.|++.+   +..+++.|
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d   35 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR   35 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence            68999999999999999999987   66676655

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=97.55  E-value=4.6e-05  Score=63.44  Aligned_cols=25  Identities=32%  Similarity=0.323  Sum_probs=23.0

Q ss_pred             eEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          38 TKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      .+.+|+||||||||||+.+|+..++
T Consensus        27 g~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           27 GFTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHHc
Confidence            3899999999999999999998876

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=97.55  E-value=4e-05  Score=66.88  Aligned_cols=36  Identities=19%  Similarity=0.346  Sum_probs=31.1

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      .++..|+|+|+.||||||+++.|+..++..+++.|.
T Consensus        14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~   49 (233)
T 1ak2_A           14 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGD   49 (233)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHH
Confidence            456789999999999999999999999877777653

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.54  E-value=4.5e-05  Score=63.92  Aligned_cols=29  Identities=21%  Similarity=0.409  Sum_probs=25.9

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      .+++.+|+|+|++||||||+++.|++.++
T Consensus        10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~   38 (186)
T 2yvu_A           10 IEKGIVVWLTGLPGSGKTTIATRLADLLQ   38 (186)
T ss_dssp             CSCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            35688999999999999999999998874

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=97.54  E-value=3.2e-05  Score=75.86  Aligned_cols=34  Identities=35%  Similarity=0.478  Sum_probs=28.8

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV   73 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv   73 (298)
                      ++|..++|+|||||||||+++.|++.++     ++++.+
T Consensus       258 ~~g~~i~I~GptGSGKTTlL~aL~~~i~-----~~~gii  291 (511)
T 2oap_1          258 EHKFSAIVVGETASGKTTTLNAIMMFIP-----PDAKVV  291 (511)
T ss_dssp             HTTCCEEEEESTTSSHHHHHHHHGGGSC-----TTCCEE
T ss_pred             hCCCEEEEECCCCCCHHHHHHHHHhhCC-----CCCCEE
Confidence            4577899999999999999999998876     566655

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.54  E-value=1.7e-05  Score=67.60  Aligned_cols=28  Identities=25%  Similarity=0.292  Sum_probs=25.4

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      ++|.+|+|+|+.||||||+++.|++.++
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~   34 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLVEALC   34 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5678999999999999999999998764

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=97.53  E-value=4.2e-05  Score=65.59  Aligned_cols=34  Identities=24%  Similarity=0.460  Sum_probs=30.4

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      +.+|+|+|++||||||+++.|++.++..+++.|.
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~   36 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASELSMIYVDTGA   36 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCceecCCh
Confidence            5689999999999999999999999988877665

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.51  E-value=5.2e-05  Score=63.81  Aligned_cols=27  Identities=41%  Similarity=0.671  Sum_probs=24.3

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCCCeE
Q psy8556          39 KVAILGPTASGKSSVALKISEYIPCEI   65 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~~~i   65 (298)
                      +|+|.|++||||||+++.|++.++..+
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~   28 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLGYEI   28 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHCCEE
T ss_pred             EEEEECCCccCHHHHHHHHHHhcCCcE
Confidence            689999999999999999999887544

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.51  E-value=4.9e-05  Score=68.47  Aligned_cols=28  Identities=29%  Similarity=0.420  Sum_probs=24.6

Q ss_pred             EEEECCCchhHHHHHHHHHhhCCCeEee
Q psy8556          40 VAILGPTASGKSSVALKISEYIPCEIIS   67 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~~l~~~iis   67 (298)
                      ++|+||+|||||||++.||+.++...+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~~~~~~i~   74 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANESGLNFIS   74 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHHTTCEEEE
T ss_pred             EEEECCCCCcHHHHHHHHHHHcCCCEEE
Confidence            8999999999999999999998755443

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.50  E-value=2.4e-05  Score=67.12  Aligned_cols=30  Identities=27%  Similarity=0.328  Sum_probs=26.6

Q ss_pred             ccCCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          33 LLFRKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        33 ~~~kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      ...+|.+|+|+|++||||||+++.|++.++
T Consensus        21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~   50 (211)
T 1m7g_A           21 RNQRGLTIWLTGLSASGKSTLAVELEHQLV   50 (211)
T ss_dssp             HTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            346688999999999999999999998875

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.49  E-value=4.5e-05  Score=71.49  Aligned_cols=28  Identities=32%  Similarity=0.544  Sum_probs=25.0

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      .++.+++|+||||||||||++.|++.++
T Consensus       121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~  148 (356)
T 3jvv_A          121 VPRGLVLVTGPTGSGKSTTLAAMLDYLN  148 (356)
T ss_dssp             CSSEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence            4567999999999999999999998764

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.48  E-value=5.4e-05  Score=64.09  Aligned_cols=28  Identities=32%  Similarity=0.398  Sum_probs=25.4

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCCC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIPC   63 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~~   63 (298)
                      ++.+|+|.|++||||||+++.|++.++.
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~   30 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIEL   30 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence            4779999999999999999999998763

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.47  E-value=3.2e-05  Score=64.40  Aligned_cols=25  Identities=28%  Similarity=0.337  Sum_probs=23.0

Q ss_pred             eEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          38 TKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      .+|+|.|++||||||+++.|++.++
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~   26 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4799999999999999999999876

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.46  E-value=6.7e-05  Score=70.89  Aligned_cols=33  Identities=24%  Similarity=0.300  Sum_probs=28.6

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEee
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIIS   67 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis   67 (298)
                      +++.+++|+||+|||||||++.|++.+++.+++
T Consensus       167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~  199 (377)
T 1svm_A          167 PKKRYWLFKGPIDSGKTTLAAALLELCGGKALN  199 (377)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence            567899999999999999999999987766553

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.45  E-value=5.9e-05  Score=64.52  Aligned_cols=27  Identities=19%  Similarity=0.177  Sum_probs=24.1

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      ++|.+++|+||||||||||++.++...
T Consensus        21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~   47 (235)
T 2w0m_A           21 PQGFFIALTGEPGTGKTIFSLHFIAKG   47 (235)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            467899999999999999999999654

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.44  E-value=3.9e-05  Score=62.85  Aligned_cols=27  Identities=15%  Similarity=0.124  Sum_probs=24.5

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      +++.++|+||+|||||||++.+++.+.
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~   61 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQAL   61 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            578899999999999999999998763

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.43  E-value=3.7e-05  Score=70.97  Aligned_cols=53  Identities=21%  Similarity=0.216  Sum_probs=36.1

Q ss_pred             cccCchhhhhhccccc-ccccc-ccCCCeEEEEECCCchhHHHHHHHHHhhCCCeE
Q psy8556          12 TETDPQQRQLTADFRR-IRTGK-LLFRKTKVAILGPTASGKSSVALKISEYIPCEI   65 (298)
Q Consensus        12 ~~~~~~~~~~~~~~~~-~~~~~-~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~i   65 (298)
                      ++.|+ +...+.+++. +..+. ....+..++|+||+|+|||||++.+++.++..+
T Consensus        25 ~~~~g-~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~   79 (334)
T 1in4_A           25 DEFIG-QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNI   79 (334)
T ss_dssp             GGCCS-CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred             HHccC-cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence            34443 4556666665 33331 112346799999999999999999999987543

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=97.42  E-value=8.7e-05  Score=66.01  Aligned_cols=31  Identities=16%  Similarity=0.275  Sum_probs=26.1

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhh---CCCeEe
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEY---IPCEII   66 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~---l~~~ii   66 (298)
                      ++.+|+|+|++||||||+++.|+..   .+..++
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i   36 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVI   36 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEE
Confidence            4678999999999999999999987   554444

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=97.42  E-value=6.4e-05  Score=65.23  Aligned_cols=32  Identities=22%  Similarity=0.360  Sum_probs=28.1

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          39 KVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      +|+|.|++||||||+++.|+..++..+++.|.
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd   33 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKYSLAHIESGG   33 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTCEEEEHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEEchHH
Confidence            58999999999999999999988877776654

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=97.41  E-value=7.3e-05  Score=67.34  Aligned_cols=33  Identities=27%  Similarity=0.179  Sum_probs=28.0

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhC-CCeEeecC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYI-PCEIISID   69 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l-~~~iis~D   69 (298)
                      +.+|+|+|++||||||+++.|+..+ +..+++.|
T Consensus         2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D   35 (301)
T 1ltq_A            2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRD   35 (301)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhCCCcEEeccc
Confidence            4689999999999999999999875 66677666

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.41  E-value=5.6e-05  Score=64.88  Aligned_cols=32  Identities=28%  Similarity=0.337  Sum_probs=28.3

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          39 KVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      .|+|+|++||||||+++.|+..++..+++.|.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~   33 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTGD   33 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCCCEEEHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEEeHHH
Confidence            48999999999999999999988878877754

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.40  E-value=5.2e-05  Score=74.37  Aligned_cols=53  Identities=17%  Similarity=0.209  Sum_probs=37.3

Q ss_pred             ccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHH--HHhhCCCeEeecCCceEe
Q psy8556          13 ETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALK--ISEYIPCEIISIDSALVY   74 (298)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~--La~~l~~~iis~Ds~qvy   74 (298)
                      +.|+.+...+++++.   |. -++|++++|+||||||||||++.  +++...     ++++.+|
T Consensus        19 ~~~~~g~~~Ld~i~~---G~-i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~-----~~~g~i~   73 (525)
T 1tf7_A           19 AKMRTMIEGFDDISH---GG-LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE-----FDEPGVF   73 (525)
T ss_dssp             CEECCCCTTHHHHTT---SS-EETTSEEEEEESTTSSHHHHHHHHHHHHHHH-----HCCCEEE
T ss_pred             ccccCCchhHHHhcC---CC-CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh-----CCCCEEE
Confidence            445666555555543   21 25678999999999999999999  566654     5677775

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.39  E-value=5.3e-05  Score=72.66  Aligned_cols=43  Identities=12%  Similarity=-0.016  Sum_probs=29.3

Q ss_pred             cccCchhhhhhccccccccccccCCCeE--EEEECCCchhHHHHHHHHHhhC
Q psy8556          12 TETDPQQRQLTADFRRIRTGKLLFRKTK--VAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~kg~i--I~I~GpTGSGKSTLa~~La~~l   61 (298)
                      +..|++..  +.++++     .-++|.+  ++|+||||||||||++.|++..
T Consensus        22 ~~~y~~~~--L~~vsl-----~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~   66 (427)
T 2qag_B           22 HVGFDSLP--DQLVNK-----SVSQGFCFNILCVGETGLGKSTLMDTLFNTK   66 (427)
T ss_dssp             CC-CC--C--HHHHHH-----SCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred             EEEECCee--cCCCce-----EecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence            55665432  444444     2356778  9999999999999999999863

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.37  E-value=0.00011  Score=64.59  Aligned_cols=29  Identities=24%  Similarity=0.432  Sum_probs=24.6

Q ss_pred             EEEECCCchhHHHHHHHHHhhCCCeEeec
Q psy8556          40 VAILGPTASGKSSVALKISEYIPCEIISI   68 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~~l~~~iis~   68 (298)
                      ++|+||||||||||++.+++.++...+..
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~~~~~~i~~   80 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGEARVPFITA   80 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence            89999999999999999999887544433

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.36  E-value=9.7e-05  Score=63.90  Aligned_cols=30  Identities=27%  Similarity=0.371  Sum_probs=27.0

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCCCeEeec
Q psy8556          39 KVAILGPTASGKSSVALKISEYIPCEIISI   68 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~   68 (298)
                      +|+|+||+||||+|.+..|++.++...||.
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~g~~~ist   31 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIST   31 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCeEEcH
Confidence            688999999999999999999998777654

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=97.36  E-value=7.1e-05  Score=74.12  Aligned_cols=28  Identities=21%  Similarity=0.250  Sum_probs=25.9

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      .+|.+++|+|+||||||||++.|++.++
T Consensus       367 ~~G~iI~LiG~sGSGKSTLar~La~~L~  394 (552)
T 3cr8_A          367 RQGFTVFFTGLSGAGKSTLARALAARLM  394 (552)
T ss_dssp             GSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             ccceEEEEECCCCChHHHHHHHHHHhhc
Confidence            4688999999999999999999999875

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=97.34  E-value=9.1e-05  Score=66.78  Aligned_cols=28  Identities=11%  Similarity=0.012  Sum_probs=25.3

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      .+|++++|+||||||||||++.|++.+.
T Consensus        33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~   60 (296)
T 1cr0_A           33 RGGEVIMVTSGSGMGKSTFVRQQALQWG   60 (296)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            5688999999999999999999998763

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.33  E-value=9.6e-05  Score=67.83  Aligned_cols=29  Identities=14%  Similarity=0.211  Sum_probs=25.8

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      ..++++++|+|||||||||++..||..+.
T Consensus       101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~  129 (306)
T 1vma_A          101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFV  129 (306)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHHHHH
Confidence            35688999999999999999999998764

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=97.31  E-value=4.5e-05  Score=64.51  Aligned_cols=28  Identities=25%  Similarity=0.215  Sum_probs=23.8

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      ..++..++|+|+||||||||++.|++..
T Consensus        23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~   50 (210)
T 1pui_A           23 SDTGIEVAFAGRSNAGKSSALNTLTNQK   50 (210)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3567889999999999999999997654

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.30  E-value=0.00012  Score=62.25  Aligned_cols=25  Identities=32%  Similarity=0.440  Sum_probs=23.4

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHh
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISE   59 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~   59 (298)
                      ++|.+++|+||||||||||+..++.
T Consensus        18 ~~G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           18 APGVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             CTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEECCCCCCHHHHHHHHHH
Confidence            5688999999999999999999987

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.27  E-value=0.00015  Score=59.25  Aligned_cols=25  Identities=32%  Similarity=0.271  Sum_probs=21.7

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      +.+.+|+|||||||||++.+|.-.+
T Consensus        23 ~g~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           23 EGINLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            5689999999999999999997544

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.27  E-value=0.00012  Score=63.25  Aligned_cols=26  Identities=12%  Similarity=0.218  Sum_probs=23.9

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      ++|.+++|+||||||||||+..++..
T Consensus        22 ~~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           22 ETGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            56889999999999999999999984

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.26  E-value=0.00017  Score=64.46  Aligned_cols=28  Identities=25%  Similarity=0.457  Sum_probs=24.2

Q ss_pred             EEEECCCchhHHHHHHHHHhhCCCeEee
Q psy8556          40 VAILGPTASGKSSVALKISEYIPCEIIS   67 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~~l~~~iis   67 (298)
                      ++|+||||||||||++.|++.++...+.
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~~~~~~i~  103 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGEARVPFIT  103 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred             EEEECCCcChHHHHHHHHHHHcCCCEEE
Confidence            8999999999999999999988744443

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.24  E-value=0.00019  Score=63.23  Aligned_cols=33  Identities=24%  Similarity=0.413  Sum_probs=27.3

Q ss_pred             eEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          38 TKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      .-+.|+||+|+||||+++.+++.++.+++..+.
T Consensus        46 ~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~   78 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISG   78 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHTCCEEEECS
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeH
Confidence            348899999999999999999998766655543

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.23  E-value=0.00017  Score=63.21  Aligned_cols=28  Identities=21%  Similarity=0.317  Sum_probs=26.1

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      .+|.+|+|.||+||||||+++.|++.++
T Consensus        24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~   51 (229)
T 4eaq_A           24 AMSAFITFEGPEGSGKTTVINEVYHRLV   51 (229)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            4789999999999999999999999886

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.22  E-value=0.00018  Score=65.61  Aligned_cols=27  Identities=19%  Similarity=0.418  Sum_probs=24.8

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      .+|.+++|+|||||||||++..||..+
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l  129 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAIS  129 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            468899999999999999999999876

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.21  E-value=0.00011  Score=77.11  Aligned_cols=25  Identities=32%  Similarity=0.517  Sum_probs=23.0

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHh
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISE   59 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~   59 (298)
                      .+|++++|+||||||||||++.|++
T Consensus       459 ~~Ge~v~LiGpNGsGKSTLLk~Lag  483 (986)
T 2iw3_A          459 KRARRYGICGPNGCGKSTLMRAIAN  483 (986)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhC
Confidence            5678999999999999999999984

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.20  E-value=0.0011  Score=56.48  Aligned_cols=27  Identities=15%  Similarity=0.261  Sum_probs=23.7

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      .+..+.|.||+|+||||+++.++..+.
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~   77 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARAN   77 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            466799999999999999999998764

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.19  E-value=8.6e-05  Score=63.13  Aligned_cols=24  Identities=29%  Similarity=0.369  Sum_probs=22.4

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCC
Q psy8556          39 KVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      +|+|+|++||||||+++.|++.++
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            799999999999999999998875

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.17  E-value=0.00029  Score=63.86  Aligned_cols=36  Identities=28%  Similarity=0.376  Sum_probs=30.6

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      ..+..+.|.||+|+|||+|++.+++.++..++..+.
T Consensus        47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~   82 (301)
T 3cf0_A           47 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKG   82 (301)
T ss_dssp             CCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECH
T ss_pred             CCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEh
Confidence            346679999999999999999999999877776654

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.16  E-value=0.00017  Score=67.57  Aligned_cols=34  Identities=21%  Similarity=0.111  Sum_probs=26.3

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV   73 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv   73 (298)
                      +|++++|+||||||||||++.|++...    ++++|.|
T Consensus       214 ~G~~~~lvG~sG~GKSTLln~L~g~~~----~~~~G~I  247 (358)
T 2rcn_A          214 TGRISIFAGQSGVGKSSLLNALLGLQN----EILTNDV  247 (358)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHCCSS----CCCCC--
T ss_pred             CCCEEEEECCCCccHHHHHHHHhcccc----ccccCCc
Confidence            578999999999999999999987653    1455555

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=97.10  E-value=0.00023  Score=62.34  Aligned_cols=38  Identities=18%  Similarity=0.106  Sum_probs=30.8

Q ss_pred             cccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556          32 KLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISID   69 (298)
Q Consensus        32 ~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~D   69 (298)
                      +|+.+..+|+|.|+.||||||+++.||+.++.+++..|
T Consensus         9 ~m~~~~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d~~   46 (223)
T 3hdt_A            9 FMGNKNLIITIEREYGSGGRIVGKKLAEELGIHFYDDD   46 (223)
T ss_dssp             ---CCCEEEEEEECTTSCHHHHHHHHHHHHTCEEECHH
T ss_pred             ccCCCCeEEEEeCCCCCCHHHHHHHHHHHcCCcEEcHH
Confidence            45556789999999999999999999999998876543

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=97.09  E-value=0.0002  Score=64.03  Aligned_cols=27  Identities=33%  Similarity=0.469  Sum_probs=24.1

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      ++|.+++|+||||||||||+..++...
T Consensus        28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~   54 (279)
T 1nlf_A           28 VAGTVGALVSPGGAGKSMLALQLAAQI   54 (279)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            468899999999999999999998753

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=97.09  E-value=0.00032  Score=60.13  Aligned_cols=35  Identities=23%  Similarity=0.157  Sum_probs=30.3

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY   74 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy   74 (298)
                      ..+|+|.|+.||||||+++.||+.++.+++  | +.+|
T Consensus         6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~~--D-~~~~   40 (201)
T 3fdi_A            6 QIIIAIGREFGSGGHLVAKKLAEHYNIPLY--S-KELL   40 (201)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHTTCCEE--C-HHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHhCcCEE--C-HHHH
Confidence            468999999999999999999999998887  3 4454

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=97.09  E-value=0.00017  Score=67.98  Aligned_cols=27  Identities=22%  Similarity=0.154  Sum_probs=24.7

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      .+| +++|+||||||||||+.+|+..++
T Consensus        59 ~~G-~~~lvG~NGaGKStLl~aI~~l~~   85 (415)
T 4aby_A           59 GGG-FCAFTGETGAGKSIIVDALGLLLG   85 (415)
T ss_dssp             CSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred             CCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence            566 999999999999999999988876

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=97.08  E-value=0.00029  Score=65.61  Aligned_cols=27  Identities=19%  Similarity=0.327  Sum_probs=25.4

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      ++|.++.|+||||||||||+..++...
T Consensus       129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          129 ETQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            678999999999999999999999876

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=97.07  E-value=0.00027  Score=65.23  Aligned_cols=29  Identities=21%  Similarity=0.357  Sum_probs=26.0

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      ..++++++|+||+||||||++..||..+.
T Consensus       102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~  130 (320)
T 1zu4_A          102 ENRLNIFMLVGVNGTGKTTSLAKMANYYA  130 (320)
T ss_dssp             TTSCEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            46789999999999999999999998764

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.06  E-value=0.00026  Score=59.41  Aligned_cols=26  Identities=19%  Similarity=0.161  Sum_probs=22.6

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      +..+++|+|++|||||||+..|+..+
T Consensus         3 ~~~~i~i~G~sGsGKTTl~~~L~~~l   28 (169)
T 1xjc_A            3 AMNVWQVVGYKHSGKTTLMEKWVAAA   28 (169)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence            35689999999999999999998865

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=97.06  E-value=0.00023  Score=71.80  Aligned_cols=20  Identities=45%  Similarity=0.496  Sum_probs=18.4

Q ss_pred             CCCeEEEEECCCchhHHHHH
Q psy8556          35 FRKTKVAILGPTASGKSSVA   54 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa   54 (298)
                      ++|++++|+||||||||||+
T Consensus        42 ~~Ge~~~liGpNGaGKSTLl   61 (670)
T 3ux8_A           42 PRGKLVVLTGLSGSGKSSLA   61 (670)
T ss_dssp             ETTSEEEEECSTTSSHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHh
Confidence            56789999999999999996

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=97.03  E-value=8.6e-05  Score=63.07  Aligned_cols=26  Identities=23%  Similarity=0.231  Sum_probs=21.7

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCCCeE
Q psy8556          39 KVAILGPTASGKSSVALKISEYIPCEI   65 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~~~i   65 (298)
                      ++.|+|++||||||++..|+.. +.++
T Consensus         1 ~ilV~Gg~~SGKS~~A~~la~~-~~~~   26 (180)
T 1c9k_A            1 MILVTGGARSGKSRHAEALIGD-APQV   26 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCS-CSSE
T ss_pred             CEEEECCCCCcHHHHHHHHHhc-CCCe
Confidence            3789999999999999999866 5343

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=97.03  E-value=0.00026  Score=63.39  Aligned_cols=67  Identities=13%  Similarity=0.290  Sum_probs=42.3

Q ss_pred             ChHHHHhhhcccCchhhhhhccccc-ccc-----c-----cccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556           3 DVKDVLDRDTETDPQQRQLTADFRR-IRT-----G-----KLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISID   69 (298)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~-----~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~D   69 (298)
                      +++++.+...+...+++..+..+.. +..     +     .....+.-+.|.||+|+|||++++.++..++..++..+
T Consensus         5 ~~~~l~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~   82 (310)
T 1ofh_A            5 TPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE   82 (310)
T ss_dssp             CHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred             CHHHHHHHHhhhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEc
Confidence            4566666666655555554444332 111     0     00123456889999999999999999999876665444

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.01  E-value=0.00049  Score=61.66  Aligned_cols=34  Identities=18%  Similarity=0.392  Sum_probs=28.7

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIPCEIISID   69 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~D   69 (298)
                      .+.-+.|.||+|+|||++++.+++.++..++..+
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~   86 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATECSATFLNIS   86 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEee
Confidence            4567899999999999999999999987665444

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=97.00  E-value=0.00029  Score=63.77  Aligned_cols=39  Identities=15%  Similarity=0.073  Sum_probs=31.3

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV   73 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv   73 (298)
                      +.+..+.|.||+|+|||+|++.+|..++..++..+..++
T Consensus        34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l   72 (293)
T 3t15_A           34 KVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGEL   72 (293)
T ss_dssp             CCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHh
Confidence            445678889999999999999999999877766554333

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=97.00  E-value=0.00047  Score=64.00  Aligned_cols=35  Identities=26%  Similarity=0.496  Sum_probs=29.4

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      .+.-+.|.||+|+|||++++.||..++.+++..+.
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~   84 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADA   84 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEech
Confidence            34568999999999999999999999877765553

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.98  E-value=0.00036  Score=61.12  Aligned_cols=40  Identities=15%  Similarity=0.200  Sum_probs=26.3

Q ss_pred             ccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          23 ADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        23 ~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      +.|-+..+.+...+|.+|+|.|+.||||||+++.|++.++
T Consensus         7 ~~~~~~~~~~~~~~~~~i~~~G~~g~GKst~~~~l~~~l~   46 (223)
T 3ld9_A            7 HHMGTLEAQTQGPGSMFITFEGIDGSGKTTQSHLLAEYLS   46 (223)
T ss_dssp             ------------CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             cccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4455666667778899999999999999999999998775

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=96.97  E-value=0.00039  Score=63.29  Aligned_cols=27  Identities=26%  Similarity=0.400  Sum_probs=24.9

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      ++++++|+|++||||||++..||..+.
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~  123 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYK  123 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            688999999999999999999998764

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.97  E-value=0.00037  Score=58.64  Aligned_cols=25  Identities=16%  Similarity=0.195  Sum_probs=22.5

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      .++++|+|++|||||||+..|++.+
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l   30 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPAL   30 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence            4689999999999999999998764

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=96.95  E-value=0.00034  Score=71.77  Aligned_cols=25  Identities=28%  Similarity=0.352  Sum_probs=23.1

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      |++++|+|||||||||+++.+++..
T Consensus       576 g~i~~I~GpNGsGKSTlLr~iagl~  600 (765)
T 1ewq_A          576 HELVLITGPNMAGKSTFLRQTALIA  600 (765)
T ss_dssp             SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCChHHHHHHHHhhh
Confidence            7899999999999999999999753

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=96.92  E-value=0.00038  Score=73.55  Aligned_cols=49  Identities=18%  Similarity=0.106  Sum_probs=29.8

Q ss_pred             cccCchhhhhhcccccc-cc-ccccCCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          12 TETDPQQRQLTADFRRI-RT-GKLLFRKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        12 ~~~~~~~~~~~~~~~~~-~~-~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      +..|+++.+..++++.. .. .....+|++++|+|||||||||+++.+ +.+
T Consensus       762 ~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~  812 (1022)
T 2o8b_B          762 TKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLL  812 (1022)
T ss_dssp             -----CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHH
T ss_pred             EEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHH
Confidence            34554555666666652 11 011234789999999999999999999 553

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.92  E-value=0.00059  Score=60.67  Aligned_cols=34  Identities=18%  Similarity=0.342  Sum_probs=28.5

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIPCEIISID   69 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~D   69 (298)
                      .+.-+.|.||+|+|||++++.++..++..++..+
T Consensus        50 ~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~   83 (285)
T 3h4m_A           50 PPKGILLYGPPGTGKTLLAKAVATETNATFIRVV   83 (285)
T ss_dssp             CCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence            3456899999999999999999999987765544

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=96.92  E-value=0.00046  Score=59.94  Aligned_cols=32  Identities=22%  Similarity=0.310  Sum_probs=29.4

Q ss_pred             eEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          38 TKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      ..|+|+|.-||||||+++.|+. ++.+++++|.
T Consensus        10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD~   41 (210)
T 4i1u_A           10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTDL   41 (210)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCcEEECcH
Confidence            4699999999999999999988 8999998885

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=96.91  E-value=0.00041  Score=64.99  Aligned_cols=24  Identities=33%  Similarity=0.375  Sum_probs=20.9

Q ss_pred             eEEEEECCCchhHHHHHHHHHhhC
Q psy8556          38 TKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      .+++|+||||||||||+.+|+-.+
T Consensus        24 g~~~i~G~NGaGKTTll~ai~~al   47 (365)
T 3qf7_A           24 GITVVEGPNGAGKSSLFEAISFAL   47 (365)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            478899999999999999987553

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.89  E-value=0.00072  Score=55.29  Aligned_cols=25  Identities=24%  Similarity=0.388  Sum_probs=22.2

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      +..+.|+||+|+|||++++.++..+
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHH
Confidence            4567899999999999999999876

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.88  E-value=0.00037  Score=61.75  Aligned_cols=30  Identities=27%  Similarity=0.247  Sum_probs=25.5

Q ss_pred             ccCCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          33 LLFRKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        33 ~~~kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      +.+++.+|+|.|+.||||||+++.|++.++
T Consensus        20 ~~~~~~~I~ieG~~GsGKST~~~~L~~~l~   49 (263)
T 1p5z_B           20 EGTRIKKISIEGNIAAGKSTFVNILKQLCE   49 (263)
T ss_dssp             ---CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             cccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            346788999999999999999999999985

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=96.88  E-value=0.00057  Score=58.59  Aligned_cols=26  Identities=31%  Similarity=0.221  Sum_probs=22.3

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      +.+.+|+|||||||||++.+|.-.+.
T Consensus        23 ~~~~~I~G~NgsGKStil~ai~~~l~   48 (203)
T 3qks_A           23 EGINLIIGQNGSGKSSLLDAILVGLY   48 (203)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence            56899999999999999999875543

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.87  E-value=0.00064  Score=59.38  Aligned_cols=33  Identities=18%  Similarity=0.374  Sum_probs=27.3

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIPCEIISID   69 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~D   69 (298)
                      +.-+.|.||+|+|||++++.++..++..++..+
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~   71 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVATEAQVPFLAMA   71 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCEEEec
Confidence            455889999999999999999998876665443

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.86  E-value=0.00048  Score=59.49  Aligned_cols=26  Identities=15%  Similarity=0.155  Sum_probs=22.7

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      ++|.+++|+||+|||||||+..++..
T Consensus        21 ~~G~~~~i~G~~GsGKTtl~~~~~~~   46 (247)
T 2dr3_A           21 PERNVVLLSGGPGTGKTIFSQQFLWN   46 (247)
T ss_dssp             ETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            56889999999999999998888654

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.85  E-value=0.00085  Score=58.52  Aligned_cols=27  Identities=26%  Similarity=0.390  Sum_probs=25.0

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      +|.+|+|.|+.||||||+++.|++.++
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            467899999999999999999999985

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.84  E-value=0.00084  Score=54.82  Aligned_cols=25  Identities=20%  Similarity=0.449  Sum_probs=22.4

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      +..+.|+||+|+|||++++.++..+
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHH
Confidence            4568899999999999999999876

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=96.84  E-value=0.00064  Score=67.01  Aligned_cols=30  Identities=23%  Similarity=0.430  Sum_probs=26.8

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCCCeE
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIPCEI   65 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~i   65 (298)
                      ++..++|+||||+|||||++.|++.++...
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~  136 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKF  136 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHHHHTCEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcCCCe
Confidence            578999999999999999999999987544

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=96.84  E-value=0.00049  Score=57.67  Aligned_cols=24  Identities=25%  Similarity=0.416  Sum_probs=21.8

Q ss_pred             eEEEEECCCchhHHHHHHHHHhhC
Q psy8556          38 TKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      ..++|+|++|||||||++.+++..
T Consensus        30 ~kv~lvG~~g~GKSTLl~~l~~~~   53 (191)
T 1oix_A           30 FKVVLIGDSGVGKSNLLSRFTRNE   53 (191)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCC
Confidence            478999999999999999999865

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=96.84  E-value=0.00027  Score=71.27  Aligned_cols=24  Identities=33%  Similarity=0.325  Sum_probs=21.1

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHH
Q psy8556          35 FRKTKVAILGPTASGKSSVALKIS   58 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La   58 (298)
                      ++|++++|+||||||||||++.+.
T Consensus       346 ~~Ge~vaIiGpnGsGKSTLl~~i~  369 (670)
T 3ux8_A          346 PLGTFVAVTGVSGSGKSTLVNEVL  369 (670)
T ss_dssp             ETTSEEEEECSTTSSHHHHHTTTH
T ss_pred             cCCCEEEEEeeCCCCHHHHHHHHH
Confidence            578899999999999999997653

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=96.83  E-value=0.00052  Score=63.41  Aligned_cols=25  Identities=36%  Similarity=0.416  Sum_probs=21.2

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHh
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISE   59 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~   59 (298)
                      -.+.+.+|+|||||||||++.+|+-
T Consensus        21 f~~~~~~i~G~NGsGKS~lleAi~~   45 (339)
T 3qkt_A           21 FKEGINLIIGQNGSGKSSLLDAILV   45 (339)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHH
Confidence            3457889999999999999998753

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=96.83  E-value=0.00064  Score=64.76  Aligned_cols=27  Identities=33%  Similarity=0.431  Sum_probs=24.7

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      .+.+++|+||||||||||+.+|+..++
T Consensus        25 ~~~~~~i~G~nG~GKstll~ai~~~~~   51 (430)
T 1w1w_A           25 ESNFTSIIGPNGSGKSNMMDAISFVLG   51 (430)
T ss_dssp             TCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence            468999999999999999999998876

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=96.82  E-value=0.00056  Score=57.45  Aligned_cols=24  Identities=25%  Similarity=0.416  Sum_probs=21.5

Q ss_pred             eEEEEECCCchhHHHHHHHHHhhC
Q psy8556          38 TKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      ..++|+|++|||||||++.|++..
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~~   29 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRNE   29 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECcCCCCHHHHHHHHhcCC
Confidence            468999999999999999999864

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=96.81  E-value=0.00058  Score=70.44  Aligned_cols=26  Identities=23%  Similarity=0.321  Sum_probs=24.0

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      ++|++++|+|||||||||+++.+++.
T Consensus       605 ~~g~i~~ItGpNGsGKSTlLr~iagl  630 (800)
T 1wb9_A          605 PQRRMLIITGPNMGGKSTYMRQTALI  630 (800)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCChHHHHHHHHHH
Confidence            56889999999999999999999875

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.80  E-value=0.00051  Score=61.72  Aligned_cols=56  Identities=20%  Similarity=0.164  Sum_probs=36.5

Q ss_pred             HHhhhcccCchhhhhhccccc-cccc----ccc-CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556           7 VLDRDTETDPQQRQLTADFRR-IRTG----KLL-FRKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~-~kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      +-...++.+.+++..+..+.. +..+    ..+ ++...+.|+||+|+|||++++.|++.+.
T Consensus        11 l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~   72 (311)
T 4fcw_A           11 LEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF   72 (311)
T ss_dssp             HHHHHHTTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred             HHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHc
Confidence            334445566666665555444 2222    111 2234799999999999999999999873

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.79  E-value=0.00052  Score=60.45  Aligned_cols=32  Identities=28%  Similarity=0.346  Sum_probs=28.4

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          39 KVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      .++|+||.||||||++..|++.++...|+.+.
T Consensus        10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gd   41 (230)
T 3gmt_A           10 RLILLGAPGAGKGTQANFIKEKFGIPQISTGD   41 (230)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTCCEECHHH
T ss_pred             ceeeECCCCCCHHHHHHHHHHHhCCCeeechH
Confidence            58999999999999999999999888876653

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=96.78  E-value=0.00076  Score=55.56  Aligned_cols=25  Identities=20%  Similarity=0.393  Sum_probs=22.0

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      +...|+|+|++|+|||||++.|++.
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4567999999999999999999864

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=96.75  E-value=0.00077  Score=63.93  Aligned_cols=39  Identities=28%  Similarity=0.332  Sum_probs=29.9

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhC-------CCeEeecCCceE
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYI-------PCEIISIDSALV   73 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l-------~~~iis~Ds~qv   73 (298)
                      .++..++|+|+||||||||++.|++.-       +...+.+++|.+
T Consensus        18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v   63 (392)
T 1ni3_A           18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKV   63 (392)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEE
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeee
Confidence            457789999999999999999999832       223455666666

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.74  E-value=0.00076  Score=61.79  Aligned_cols=21  Identities=24%  Similarity=0.553  Sum_probs=20.0

Q ss_pred             EEEECCCchhHHHHHHHHHhh
Q psy8556          40 VAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~~   60 (298)
                      +.|+||+|+||||+++.+++.
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~~   59 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLES   59 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999999994

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.72  E-value=0.00083  Score=59.55  Aligned_cols=35  Identities=34%  Similarity=0.376  Sum_probs=28.4

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISID   69 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~D   69 (298)
                      ..+.-+.|.||+|+|||++++.++...+..++..+
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~   96 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKIC   96 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEE
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence            34567899999999999999999998876655443

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=96.71  E-value=0.00081  Score=70.24  Aligned_cols=26  Identities=27%  Similarity=0.321  Sum_probs=23.1

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      .+|++++|+|||||||||+++.++..
T Consensus       671 ~~g~i~~ItGPNGaGKSTlLr~i~~i  696 (918)
T 3thx_B          671 DSERVMIITGPNMGGKSSYIKQVALI  696 (918)
T ss_dssp             TSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCchHHHHHHHHHH
Confidence            45789999999999999999998753

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=96.71  E-value=0.00078  Score=64.87  Aligned_cols=53  Identities=19%  Similarity=0.230  Sum_probs=34.4

Q ss_pred             CchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEee
Q psy8556          15 DPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIIS   67 (298)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis   67 (298)
                      +-++++++...+.++......+...+.|.||+|+||||+++.|++.++...+.
T Consensus        28 ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~   80 (447)
T 3pvs_A           28 YIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVER   80 (447)
T ss_dssp             CCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred             hCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEE
Confidence            34556666332322222111223468999999999999999999998865543

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=96.69  E-value=0.00098  Score=62.00  Aligned_cols=27  Identities=22%  Similarity=0.343  Sum_probs=24.1

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      +.+.+|+|+|++|||||||++.|++.+
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~   98 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKML   98 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            457899999999999999999999864

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=96.68  E-value=0.00084  Score=58.45  Aligned_cols=29  Identities=17%  Similarity=0.127  Sum_probs=26.5

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPC   63 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~   63 (298)
                      .+|.+|+|.|+.||||||++..|++.++.
T Consensus         3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A            3 GRGKLILIEGLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            46889999999999999999999998873

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.67  E-value=0.0013  Score=55.51  Aligned_cols=46  Identities=22%  Similarity=0.250  Sum_probs=34.9

Q ss_pred             cccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556          28 IRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY   74 (298)
Q Consensus        28 ~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy   74 (298)
                      ++++...-.+.-+.|.|+||+||||++..|... +..+++-|...+.
T Consensus         7 lHas~v~v~G~gvli~G~SGaGKStlal~L~~r-G~~lvaDD~v~i~   52 (181)
T 3tqf_A            7 WHANFLVIDKMGVLITGEANIGKSELSLALIDR-GHQLVCDDVIDLK   52 (181)
T ss_dssp             EESEEEEETTEEEEEEESSSSSHHHHHHHHHHT-TCEEEESSEEEEE
T ss_pred             EEEEEEEECCEEEEEEcCCCCCHHHHHHHHHHc-CCeEecCCEEEEE
Confidence            444555566778999999999999999999874 6677766655454

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.65  E-value=0.0013  Score=57.15  Aligned_cols=33  Identities=27%  Similarity=0.464  Sum_probs=27.8

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIPCEIISID   69 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~D   69 (298)
                      ...+.|.||.|+||||++.+|++.+.+.+++..
T Consensus        58 kn~ili~GPPGtGKTt~a~ala~~l~g~i~~fa   90 (212)
T 1tue_A           58 KNCLVFCGPANTGKSYFGMSFIHFIQGAVISFV   90 (212)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHHHHHTCEECCCC
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEE
Confidence            446899999999999999999999877766543

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=96.65  E-value=0.0012  Score=64.61  Aligned_cols=30  Identities=23%  Similarity=0.423  Sum_probs=26.1

Q ss_pred             EEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556          40 VAILGPTASGKSSVALKISEYIPCEIISID   69 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~~l~~~iis~D   69 (298)
                      ++|+||+|+|||||++.|++..+...+..+
T Consensus        67 vLL~GppGtGKTtLaraIa~~~~~~~i~i~   96 (499)
T 2dhr_A           67 VLLVGPPGVGKTHLARAVAGEARVPFITAS   96 (499)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence            899999999999999999999876665544

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=96.64  E-value=0.0011  Score=61.84  Aligned_cols=34  Identities=29%  Similarity=0.519  Sum_probs=28.4

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      +.-+.|.||+|+|||++++.++..++.+++..+.
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~  105 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDA  105 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecc
Confidence            4458899999999999999999999876665543

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=96.62  E-value=0.00093  Score=54.97  Aligned_cols=25  Identities=32%  Similarity=0.371  Sum_probs=21.9

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      ++..|+|+|++|+|||||++.|++.
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4667999999999999999999864

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.61  E-value=0.0011  Score=60.73  Aligned_cols=27  Identities=22%  Similarity=0.316  Sum_probs=24.2

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      ..+..++|.||+|+|||||++.+++.+
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~   69 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKL   69 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            456789999999999999999999876

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=96.60  E-value=0.001  Score=57.60  Aligned_cols=28  Identities=25%  Similarity=0.330  Sum_probs=24.9

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      .+|.+|+|.|+.||||||+++.|+..+.
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~   31 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAERLR   31 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            3588999999999999999999998774

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.59  E-value=0.00099  Score=56.13  Aligned_cols=24  Identities=17%  Similarity=0.256  Sum_probs=22.0

Q ss_pred             eEEEEECCCchhHHHHHHHHHhhC
Q psy8556          38 TKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      ..+.|.||+|+|||+|++.++..+
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~   78 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANEL   78 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            678999999999999999999865

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.59  E-value=0.0011  Score=63.61  Aligned_cols=38  Identities=16%  Similarity=0.345  Sum_probs=31.5

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV   73 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv   73 (298)
                      .++=+.+.||+|+|||+|++++|+.++..+++.+...+
T Consensus       205 ~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l  242 (428)
T 4b4t_K          205 PPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEF  242 (428)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchh
Confidence            34558899999999999999999999988877665443

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=96.58  E-value=0.001  Score=54.03  Aligned_cols=23  Identities=22%  Similarity=0.387  Sum_probs=20.8

Q ss_pred             eEEEEECCCchhHHHHHHHHHhh
Q psy8556          38 TKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      ..++|+|++|+|||||++.+++.
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~   26 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGE   26 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999864

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=96.57  E-value=0.00092  Score=58.98  Aligned_cols=28  Identities=21%  Similarity=0.292  Sum_probs=24.9

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      .+|.+|+|.|++||||||++..|++.+.
T Consensus        25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~   52 (236)
T 3lv8_A           25 MNAKFIVIEGLEGAGKSTAIQVVVETLQ   52 (236)
T ss_dssp             -CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4688999999999999999999998774

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=96.56  E-value=0.0013  Score=61.63  Aligned_cols=24  Identities=17%  Similarity=0.205  Sum_probs=21.4

Q ss_pred             eEEEEECCCchhHHHHHHHHHhhC
Q psy8556          38 TKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      .+++|+|||||||||++.+|+...
T Consensus        27 g~~~i~G~nG~GKttll~ai~~~~   50 (359)
T 2o5v_A           27 GVTGIYGENGAGKTNLLEAAYLAL   50 (359)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChhHHHHHHHHhc
Confidence            389999999999999999998643

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.54  E-value=0.00095  Score=58.56  Aligned_cols=28  Identities=14%  Similarity=0.177  Sum_probs=22.7

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      .+|.+|+|.||.||||||+++.|++.++
T Consensus        23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~   50 (227)
T 3v9p_A           23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ   50 (227)
T ss_dssp             CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4689999999999999999999998875

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=96.54  E-value=0.0015  Score=65.58  Aligned_cols=34  Identities=26%  Similarity=0.518  Sum_probs=28.9

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhC---CCeEeecC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYI---PCEIISID   69 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l---~~~iis~D   69 (298)
                      ++.+|.|+|++||||||+++.|+..+   +...+..|
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lD   87 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD   87 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence            67899999999999999999999987   65555454

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.54  E-value=0.0012  Score=63.42  Aligned_cols=38  Identities=13%  Similarity=0.278  Sum_probs=31.8

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV   73 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv   73 (298)
                      .++=|.+.||+|+|||.|++++|+.++..+++.+...+
T Consensus       214 ~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l  251 (434)
T 4b4t_M          214 APKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQL  251 (434)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred             CCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhh
Confidence            35568899999999999999999999988877665444

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=96.54  E-value=0.00091  Score=66.66  Aligned_cols=40  Identities=23%  Similarity=0.420  Sum_probs=30.6

Q ss_pred             hhhhhhccccc-cccccccCCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          17 QQRQLTADFRR-IRTGKLLFRKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        17 ~~~~~~~~~~~-~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      ++...+.+++. +..      +..++|+||+|||||||++.|++.++
T Consensus        45 G~~~~l~~l~~~i~~------g~~vll~Gp~GtGKTtlar~ia~~l~   85 (604)
T 3k1j_A           45 GQEHAVEVIKTAANQ------KRHVLLIGEPGTGKSMLGQAMAELLP   85 (604)
T ss_dssp             SCHHHHHHHHHHHHT------TCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred             CchhhHhhccccccC------CCEEEEEeCCCCCHHHHHHHHhccCC
Confidence            44555555555 333      34699999999999999999999886

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.52  E-value=0.0018  Score=59.40  Aligned_cols=34  Identities=24%  Similarity=0.369  Sum_probs=27.7

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhC-CCeEeecC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYI-PCEIISID   69 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l-~~~iis~D   69 (298)
                      ++.-+.|.||+|+|||+|++.+|..+ +..+++.+
T Consensus        44 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~   78 (322)
T 1xwi_A           44 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSIS   78 (322)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEE
T ss_pred             CCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEE
Confidence            44678899999999999999999988 55555444

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.52  E-value=0.0012  Score=63.44  Aligned_cols=38  Identities=21%  Similarity=0.321  Sum_probs=31.3

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV   73 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv   73 (298)
                      .++=+.+.||+|+|||+|++++|..++..+++.+...+
T Consensus       214 ~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l  251 (437)
T 4b4t_L          214 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGI  251 (437)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGT
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhh
Confidence            45568899999999999999999999988876654433

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=96.52  E-value=0.0018  Score=60.17  Aligned_cols=35  Identities=20%  Similarity=0.311  Sum_probs=29.3

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISID   69 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~D   69 (298)
                      ..+.-+.|.||+|+|||+|++.++..++..++..+
T Consensus       115 ~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~  149 (357)
T 3d8b_A          115 GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSIS  149 (357)
T ss_dssp             SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEe
Confidence            34567899999999999999999999987765444

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.52  E-value=0.001  Score=60.99  Aligned_cols=24  Identities=38%  Similarity=0.457  Sum_probs=21.9

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCC
Q psy8556          39 KVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      +.+|+||||||||||+.+|.-.++
T Consensus        26 ~~~i~G~NGsGKS~ll~ai~~llg   49 (322)
T 1e69_A           26 VTAIVGPNGSGKSNIIDAIKWVFG   49 (322)
T ss_dssp             EEEEECCTTTCSTHHHHHHHHTSC
T ss_pred             cEEEECCCCCcHHHHHHHHHHHhC
Confidence            899999999999999999987664

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.51  E-value=0.0012  Score=60.52  Aligned_cols=27  Identities=22%  Similarity=0.338  Sum_probs=23.9

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      ..+..+.|.||+|+||||+++.++..+
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            446679999999999999999999876

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.51  E-value=0.0009  Score=60.08  Aligned_cols=27  Identities=26%  Similarity=0.469  Sum_probs=23.3

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      +.+.-+.|.||+|+|||++++.+++.+
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            344568999999999999999999876

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=96.51  E-value=0.0015  Score=59.67  Aligned_cols=35  Identities=23%  Similarity=0.402  Sum_probs=29.2

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      .+.-+.|.||+|+|||+|++.++..++..++..+.
T Consensus        50 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~   84 (322)
T 3eie_A           50 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSS   84 (322)
T ss_dssp             CCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEch
Confidence            34568999999999999999999998877765543

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=96.50  E-value=0.0014  Score=64.31  Aligned_cols=28  Identities=0%  Similarity=0.029  Sum_probs=25.4

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      +.+.+|.|+|.+||||||+++.|++.++
T Consensus       393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~  420 (511)
T 1g8f_A          393 KQGFSIVLGNSLTVSREQLSIALLSTFL  420 (511)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred             ccceEEEecccCCCCHHHHHHHHHHHHH
Confidence            3567899999999999999999999987

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=96.49  E-value=0.0012  Score=63.50  Aligned_cols=27  Identities=22%  Similarity=0.294  Sum_probs=24.3

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      .++.+++++||+||||||++..||..+
T Consensus        95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l  121 (433)
T 3kl4_A           95 KLPFIIMLVGVQGSGKTTTAGKLAYFY  121 (433)
T ss_dssp             SSSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            358899999999999999999999765

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=96.48  E-value=0.0022  Score=58.43  Aligned_cols=52  Identities=13%  Similarity=0.157  Sum_probs=35.8

Q ss_pred             HhhhcccCchhhhhhccccc-cccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeE
Q psy8556           8 LDRDTETDPQQRQLTADFRR-IRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEI   65 (298)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~i   65 (298)
                      .....+.+.+++..+..+.. +..+      .-+.|.||+|+|||+|++.++..++..+
T Consensus        22 ~~~~~~~i~g~~~~~~~l~~~l~~~------~~vll~G~pGtGKT~la~~la~~~~~~~   74 (331)
T 2r44_A           22 IDEVGKVVVGQKYMINRLLIGICTG------GHILLEGVPGLAKTLSVNTLAKTMDLDF   74 (331)
T ss_dssp             HHHHTTTCCSCHHHHHHHHHHHHHT------CCEEEESCCCHHHHHHHHHHHHHTTCCE
T ss_pred             HHHhccceeCcHHHHHHHHHHHHcC------CeEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence            34445556666665555443 2222      2488999999999999999999987554

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=96.47  E-value=0.0013  Score=68.75  Aligned_cols=25  Identities=24%  Similarity=0.254  Sum_probs=22.3

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHh
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISE   59 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~   59 (298)
                      .+|++++|+|||||||||+++.++.
T Consensus       660 ~~g~i~~ItGpNGsGKSTlLr~ial  684 (934)
T 3thx_A          660 DKQMFHIITGPNMGGKSTYIRQTGV  684 (934)
T ss_dssp             TTBCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999999999943

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=96.46  E-value=0.00068  Score=59.77  Aligned_cols=30  Identities=23%  Similarity=0.436  Sum_probs=25.6

Q ss_pred             EEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556          40 VAILGPTASGKSSVALKISEYIPCEIISID   69 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~~l~~~iis~D   69 (298)
                      +.|.||+|+|||++++.+++.++.+++..+
T Consensus        47 vll~G~~GtGKT~la~~la~~~~~~~~~v~   76 (268)
T 2r62_A           47 VLLVGPPGTGKTLLAKAVAGEAHVPFFSMG   76 (268)
T ss_dssp             CCCBCSSCSSHHHHHHHHHHHHTCCCCCCC
T ss_pred             EEEECCCCCcHHHHHHHHHHHhCCCEEEec
Confidence            779999999999999999998876665444

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=96.45  E-value=0.0013  Score=64.43  Aligned_cols=28  Identities=25%  Similarity=0.478  Sum_probs=24.8

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      ..+.+|+++|.+||||||+++.|++.++
T Consensus        33 ~~~~lIvlvGlpGSGKSTia~~La~~L~   60 (520)
T 2axn_A           33 NSPTVIVMVGLPARGKTYISKKLTRYLN   60 (520)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4567999999999999999999998763

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=96.45  E-value=0.0011  Score=62.91  Aligned_cols=24  Identities=17%  Similarity=0.285  Sum_probs=22.0

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHH
Q psy8556          35 FRKTKVAILGPTASGKSSVALKIS   58 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La   58 (298)
                      ++|.++.|+||+|||||||+..++
T Consensus       176 ~~Gei~~I~G~sGsGKTTLl~~la  199 (400)
T 3lda_A          176 ETGSITELFGEFRTGKSQLCHTLA  199 (400)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCChHHHHHHHH
Confidence            678999999999999999999775

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=96.43  E-value=0.0013  Score=64.47  Aligned_cols=27  Identities=22%  Similarity=0.420  Sum_probs=25.0

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      .+|.+++|+||||||||||++.+++..
T Consensus       279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~  305 (525)
T 1tf7_A          279 FKDSIILATGATGTGKTLLVSRFVENA  305 (525)
T ss_dssp             ESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            678899999999999999999999875

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.41  E-value=0.0014  Score=62.36  Aligned_cols=37  Identities=24%  Similarity=0.495  Sum_probs=30.8

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV   73 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv   73 (298)
                      ++=+.+.||+|+|||.||+++|+..+..+++.+...+
T Consensus       182 prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l  218 (405)
T 4b4t_J          182 PKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAEL  218 (405)
T ss_dssp             CCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred             CCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHh
Confidence            3447899999999999999999999988877665444

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=96.40  E-value=0.0018  Score=62.26  Aligned_cols=34  Identities=21%  Similarity=0.556  Sum_probs=29.0

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      +.-+.|.||+|+||||+++.||+.++..++..|.
T Consensus        50 ~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~   83 (444)
T 1g41_A           50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA   83 (444)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHcCCCceeecc
Confidence            3458899999999999999999999987776654

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=96.39  E-value=0.002  Score=58.65  Aligned_cols=32  Identities=25%  Similarity=0.338  Sum_probs=26.7

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCCCeEeec
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIPCEIISI   68 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~   68 (298)
                      ...+.|.||+|+|||++++.++..++..++..
T Consensus        55 ~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~   86 (338)
T 3pfi_A           55 LDHILFSGPAGLGKTTLANIISYEMSANIKTT   86 (338)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence            34589999999999999999999988665433

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.39  E-value=0.0025  Score=51.70  Aligned_cols=27  Identities=26%  Similarity=0.341  Sum_probs=23.1

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      .++...|+|+|++|||||||+..+.+.
T Consensus         5 ~~~~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            5 VERPPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            455677999999999999999999763

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=96.38  E-value=0.0027  Score=59.45  Aligned_cols=37  Identities=19%  Similarity=0.369  Sum_probs=30.9

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV   73 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv   73 (298)
                      +.-+.|.||+|+|||+|++.+|..++..++..+...+
T Consensus       148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l  184 (389)
T 3vfd_A          148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASL  184 (389)
T ss_dssp             CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHh
Confidence            4678999999999999999999999888776654333

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.38  E-value=0.0018  Score=52.11  Aligned_cols=23  Identities=17%  Similarity=0.296  Sum_probs=20.9

Q ss_pred             EEEEECCCchhHHHHHHHHHhhC
Q psy8556          39 KVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      -+.|.||+|+|||++++.++...
T Consensus        26 ~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           26 AVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CEEEECCCCCCHHHHHHHHHHhC
Confidence            37899999999999999998865

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=96.37  E-value=0.0014  Score=61.19  Aligned_cols=36  Identities=33%  Similarity=0.457  Sum_probs=25.8

Q ss_pred             cccccccccccCCCeEEEEECCCchhHHHHHHHHHh
Q psy8556          24 DFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISE   59 (298)
Q Consensus        24 ~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~   59 (298)
                      |+..+......-.+.+.+|+||||||||+++-+|.=
T Consensus        12 nFr~~~~~~i~f~~gl~vi~G~NGaGKT~ileAI~~   47 (371)
T 3auy_A           12 NFKSHVNSRIKFEKGIVAIIGENGSGKSSIFEAVFF   47 (371)
T ss_dssp             EETTEEEEEEECCSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             ccccccceEEecCCCeEEEECCCCCCHHHHHHHHHH
Confidence            344433333334457899999999999999998864

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.37  E-value=0.0016  Score=59.26  Aligned_cols=25  Identities=16%  Similarity=0.246  Sum_probs=22.6

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      +..+.|.||+|+|||||++.+++.+
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~~~~   61 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAGNEA   61 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHH
Confidence            4568999999999999999999876

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.37  E-value=0.0025  Score=62.18  Aligned_cols=34  Identities=18%  Similarity=0.370  Sum_probs=29.4

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      +..+.|.||+|+||||+++.+++.++..++..+.
T Consensus        77 ~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~  110 (516)
T 1sxj_A           77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNA  110 (516)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeC
Confidence            4679999999999999999999999877765554

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=96.36  E-value=0.0015  Score=56.60  Aligned_cols=27  Identities=22%  Similarity=0.331  Sum_probs=24.6

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      +|.+|+|.|+.||||||+++.|++.+.
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~   28 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLE   28 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            478999999999999999999998774

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.35  E-value=0.0013  Score=62.87  Aligned_cols=22  Identities=18%  Similarity=0.231  Sum_probs=20.2

Q ss_pred             EEEECCCchhHHHHHHHHHhhC
Q psy8556          40 VAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~~l   61 (298)
                      |+|+||||||||||++.|++..
T Consensus        34 I~lvG~sGaGKSTLln~L~g~~   55 (418)
T 2qag_C           34 LMVVGESGLGKSTLINSLFLTD   55 (418)
T ss_dssp             EEEECCTTSSHHHHHHHHTTCC
T ss_pred             EEEECCCCCcHHHHHHHHhCCC
Confidence            6999999999999999998764

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=96.35  E-value=0.0011  Score=60.46  Aligned_cols=21  Identities=19%  Similarity=0.302  Sum_probs=18.8

Q ss_pred             EEEECCCchhHHHHHHHHHhh
Q psy8556          40 VAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~~   60 (298)
                      |+|+||||||||||++.|++.
T Consensus        21 I~lvG~nG~GKSTLl~~L~g~   41 (301)
T 2qnr_A           21 LMVVGESGLGKSTLINSLFLT   41 (301)
T ss_dssp             EEEEEETTSSHHHHHHHHHC-
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            599999999999999999764

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.35  E-value=0.0016  Score=60.04  Aligned_cols=24  Identities=25%  Similarity=0.416  Sum_probs=22.3

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCC
Q psy8556          39 KVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      .++|.||+|+|||||++.+++.+.
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~~   69 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELYK   69 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHh
Confidence            899999999999999999998873

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=96.35  E-value=0.0016  Score=60.20  Aligned_cols=27  Identities=15%  Similarity=0.255  Sum_probs=24.4

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      .++.+++|+|++|+|||||++.|++.+
T Consensus        54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~   80 (341)
T 2p67_A           54 GNTLRLGVTGTPGAGKSTFLEAFGMLL   80 (341)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            567899999999999999999998765

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.34  E-value=0.0017  Score=54.85  Aligned_cols=26  Identities=19%  Similarity=0.261  Sum_probs=22.9

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      +..+.|.||+|+||||+++.+++.+.
T Consensus        45 ~~~~ll~G~~G~GKT~l~~~~~~~~~   70 (250)
T 1njg_A           45 HHAYLFSGTRGVGKTSIARLLAKGLN   70 (250)
T ss_dssp             CSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            35789999999999999999998764

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=96.33  E-value=0.0015  Score=54.15  Aligned_cols=22  Identities=32%  Similarity=0.531  Sum_probs=20.0

Q ss_pred             EEEEECCCchhHHHHHHHHHhh
Q psy8556          39 KVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      -|+|+|++|||||||++.+++.
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~   25 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKT   25 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4899999999999999999864

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=96.32  E-value=0.0028  Score=52.21  Aligned_cols=26  Identities=31%  Similarity=0.505  Sum_probs=22.4

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      ++.--|+|+|++|||||||+..|.+.
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhC
Confidence            34556999999999999999999875

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=96.31  E-value=0.0018  Score=54.34  Aligned_cols=34  Identities=38%  Similarity=0.366  Sum_probs=22.7

Q ss_pred             cccccccCCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          28 IRTGKLLFRKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        28 ~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      ...++...+..-|+|+|++|+|||||++.|.+..
T Consensus        15 ~~q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           15 YFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             --------CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             CCCCCCCCCcEEEEEECCCCcCHHHHHHHHHhCC
Confidence            3444444556679999999999999999998653

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=96.29  E-value=0.0018  Score=62.83  Aligned_cols=31  Identities=19%  Similarity=0.402  Sum_probs=26.6

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556          39 KVAILGPTASGKSSVALKISEYIPCEIISID   69 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~D   69 (298)
                      -+.|+||+|+|||+|++.+++..+.++++.+
T Consensus        51 gvLL~GppGtGKT~Laraia~~~~~~f~~is   81 (476)
T 2ce7_A           51 GILLVGPPGTGKTLLARAVAGEANVPFFHIS   81 (476)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCeeeCC
Confidence            3889999999999999999999887766544

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.28  E-value=0.0018  Score=62.63  Aligned_cols=39  Identities=15%  Similarity=0.258  Sum_probs=32.1

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV   73 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv   73 (298)
                      +.++=|.+.||+|+|||+|++++|+.++..+++.+...+
T Consensus       241 ~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L  279 (467)
T 4b4t_H          241 DPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSEL  279 (467)
T ss_dssp             CCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred             CCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHh
Confidence            345568899999999999999999999988876665444

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.28  E-value=0.0014  Score=61.35  Aligned_cols=28  Identities=29%  Similarity=0.431  Sum_probs=24.1

Q ss_pred             eEEEEECCCchhHHHHHHHHHhhCCCeE
Q psy8556          38 TKVAILGPTASGKSSVALKISEYIPCEI   65 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~l~~~i   65 (298)
                      ..|+|+||+||||||+++.|++.++...
T Consensus        25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f   52 (359)
T 2ga8_A           25 VCVILVGSPGSGKSTIAEELCQIINEKY   52 (359)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence            3489999999999999999999876443

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=96.28  E-value=0.0026  Score=58.51  Aligned_cols=46  Identities=20%  Similarity=0.197  Sum_probs=35.1

Q ss_pred             cccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556          28 IRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY   74 (298)
Q Consensus        28 ~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy   74 (298)
                      ++.....-.|.-++|+|+||+||||++..|.+. +..+++-|...+.
T Consensus       135 ~H~~~v~~~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~dD~~~i~  180 (314)
T 1ko7_A          135 LHGVLVDVYGVGVLITGDSGIGKSETALELIKR-GHRLVADDNVEIR  180 (314)
T ss_dssp             EESEEEEETTEEEEEEESTTSSHHHHHHHHHHT-TCEEEESSEEEEE
T ss_pred             eeEEEEEECCEEEEEEeCCCCCHHHHHHHHHhc-CCceecCCeEEEE
Confidence            344444456788999999999999999999875 6677766665554

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.27  E-value=0.0023  Score=61.25  Aligned_cols=38  Identities=16%  Similarity=0.279  Sum_probs=32.0

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV   73 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv   73 (298)
                      .+.=|.+.||+|+|||.||+++|+.++..+++.+...+
T Consensus       215 ~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l  252 (437)
T 4b4t_I          215 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSEL  252 (437)
T ss_dssp             CCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGG
T ss_pred             CCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHh
Confidence            34558899999999999999999999988887765444

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=96.27  E-value=0.0021  Score=59.70  Aligned_cols=34  Identities=24%  Similarity=0.423  Sum_probs=28.4

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      +.-+.|.||+|+|||+|++.++..++..++..+.
T Consensus        84 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~  117 (355)
T 2qp9_X           84 TSGILLYGPPGTGKSYLAKAVATEANSTFFSVSS  117 (355)
T ss_dssp             CCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEH
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeH
Confidence            3458899999999999999999999877765543

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=96.25  E-value=0.003  Score=50.75  Aligned_cols=26  Identities=23%  Similarity=0.464  Sum_probs=22.1

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      ++..-|+|+|++|||||||+..+.+.
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcC
Confidence            44567999999999999999999753

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=96.22  E-value=0.0033  Score=60.51  Aligned_cols=35  Identities=23%  Similarity=0.490  Sum_probs=28.2

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhC-----CCeEeecCC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYI-----PCEIISIDS   70 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l-----~~~iis~Ds   70 (298)
                      +|.+|+++|++||||||++..||..+     ...++.+|.
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~  138 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDT  138 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCC
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            57899999999999999999998754     234566664

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.20  E-value=0.0019  Score=59.29  Aligned_cols=41  Identities=27%  Similarity=0.522  Sum_probs=29.4

Q ss_pred             hhhhhccccc-cccccccCCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          18 QRQLTADFRR-IRTGKLLFRKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        18 ~~~~~~~~~~-~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      +...+..++. +..+..   +. ++|.||+|+||||+++.+++.+.
T Consensus        30 ~~~~~~~L~~~i~~g~~---~~-~ll~Gp~G~GKTtla~~la~~l~   71 (340)
T 1sxj_C           30 QNEVITTVRKFVDEGKL---PH-LLFYGPPGTGKTSTIVALAREIY   71 (340)
T ss_dssp             CHHHHHHHHHHHHTTCC---CC-EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhcCCC---ce-EEEECCCCCCHHHHHHHHHHHHc
Confidence            4455555555 444432   22 89999999999999999999864

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=96.20  E-value=0.004  Score=59.69  Aligned_cols=38  Identities=24%  Similarity=0.340  Sum_probs=29.3

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhC-CCeEeecCCceE
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYI-PCEIISIDSALV   73 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l-~~~iis~Ds~qv   73 (298)
                      .+.-+.|.||+|+|||+|++.+|..+ +..+++.+...+
T Consensus       166 ~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l  204 (444)
T 2zan_A          166 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL  204 (444)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC--
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHH
Confidence            34678999999999999999999998 666665554333

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=96.19  E-value=0.0022  Score=60.01  Aligned_cols=27  Identities=33%  Similarity=0.396  Sum_probs=24.4

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      ++|.++.|.||+|||||||+..++...
T Consensus        59 ~~G~i~~I~GppGsGKSTLal~la~~~   85 (356)
T 3hr8_A           59 PRGRIVEIFGQESSGKTTLALHAIAEA   85 (356)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            578899999999999999999998764

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.18  E-value=0.0022  Score=59.16  Aligned_cols=27  Identities=33%  Similarity=0.222  Sum_probs=23.7

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      ..+..+.|.||+|+||||+++.++..+
T Consensus        43 ~~~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           43 EVKFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            345689999999999999999999875

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.18  E-value=0.0031  Score=52.10  Aligned_cols=27  Identities=26%  Similarity=0.354  Sum_probs=22.8

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      .+...|+|+|++|||||||+..|.+..
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            344578999999999999999998753

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=96.17  E-value=0.0024  Score=61.12  Aligned_cols=27  Identities=26%  Similarity=0.400  Sum_probs=24.7

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      ++.+++|+|++||||||++..||..+.
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~  123 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYK  123 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            688999999999999999999998763

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=96.11  E-value=0.0027  Score=61.01  Aligned_cols=37  Identities=24%  Similarity=0.410  Sum_probs=29.1

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCC--CeEeecCCceE
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIP--CEIISIDSALV   73 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~--~~iis~Ds~qv   73 (298)
                      +.-+.|.||+|+|||++++.+|+.++  ..++..+...+
T Consensus        63 ~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~  101 (456)
T 2c9o_A           63 GRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEV  101 (456)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGG
T ss_pred             CCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHH
Confidence            34588999999999999999999987  56655554333

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=96.09  E-value=0.0021  Score=62.75  Aligned_cols=29  Identities=21%  Similarity=0.190  Sum_probs=24.2

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPC   63 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~   63 (298)
                      -.+.+.+|+|+||||||||+.+|...+++
T Consensus        58 f~~g~n~i~G~NGaGKS~lleAl~~llg~   86 (517)
T 4ad8_A           58 LGGGFCAFTGETGAGKSIIVDALGLLLGG   86 (517)
T ss_dssp             CCCSEEEEEESHHHHHHHHTHHHHHHTCS
T ss_pred             cCCCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence            33449999999999999999999877653

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=96.06  E-value=0.0022  Score=53.97  Aligned_cols=39  Identities=13%  Similarity=0.155  Sum_probs=24.9

Q ss_pred             CchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHh
Q psy8556          15 DPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISE   59 (298)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~   59 (298)
                      ||+-+.++.+++.      ..+..-|+|+|++|+|||||++.+.+
T Consensus         9 ~~~~~~~l~~~~~------~~~~~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A            9 YSGFSSVLQFLGL------YKKTGKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             ----CHHHHHHTC------TTCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             HHHHHHHHHHhhc------cCCCcEEEEECCCCCCHHHHHHHHhc
Confidence            5555444444443      12334589999999999999999964

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=96.05  E-value=0.003  Score=54.74  Aligned_cols=26  Identities=23%  Similarity=0.367  Sum_probs=22.2

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      +...|+|+|++|+|||||++.|.+..
T Consensus        28 ~~~~i~lvG~~g~GKStlin~l~g~~   53 (239)
T 3lxx_A           28 SQLRIVLVGKTGAGKSATGNSILGRK   53 (239)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHcCCC
Confidence            34579999999999999999998643

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.05  E-value=0.0029  Score=52.76  Aligned_cols=23  Identities=22%  Similarity=0.550  Sum_probs=21.0

Q ss_pred             EEEEECCCchhHHHHHHHHHhhC
Q psy8556          39 KVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      .+.|.||+|+|||++++.++..+
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            38999999999999999999865

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=96.01  E-value=0.004  Score=49.52  Aligned_cols=23  Identities=35%  Similarity=0.404  Sum_probs=20.4

Q ss_pred             EEEEECCCchhHHHHHHHHHhhC
Q psy8556          39 KVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      -|+|+|++|||||||++.+.+..
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48999999999999999998653

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=95.97  E-value=0.0043  Score=49.36  Aligned_cols=24  Identities=29%  Similarity=0.393  Sum_probs=20.9

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhh
Q psy8556          37 KTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      ..-|+|+|++|||||||++.+.+.
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            346899999999999999999864

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=95.97  E-value=0.0023  Score=58.20  Aligned_cols=26  Identities=19%  Similarity=0.345  Sum_probs=23.9

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      ++.+++++|++|+||||++..||..+
T Consensus        97 ~~~vi~i~G~~G~GKTT~~~~la~~~  122 (297)
T 1j8m_F           97 IPYVIMLVGVQGTGKTTTAGKLAYFY  122 (297)
T ss_dssp             SSEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            38899999999999999999999876

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=95.96  E-value=0.0028  Score=57.14  Aligned_cols=30  Identities=20%  Similarity=0.392  Sum_probs=25.3

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCCCeEe
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIPCEII   66 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~~~ii   66 (298)
                      +..+.|.||+|+|||++++.++..++..++
T Consensus        38 ~~~vll~G~~GtGKT~la~~i~~~~~~~~~   67 (324)
T 1hqc_A           38 LEHLLLFGPPGLGKTTLAHVIAHELGVNLR   67 (324)
T ss_dssp             CCCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            456889999999999999999998775543

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=95.96  E-value=0.0037  Score=50.53  Aligned_cols=24  Identities=29%  Similarity=0.347  Sum_probs=21.1

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhh
Q psy8556          37 KTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      ..-|+|+|++|||||||++.+.+.
T Consensus        15 ~~~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           15 IFKYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            356899999999999999999864

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=95.96  E-value=0.0024  Score=60.93  Aligned_cols=27  Identities=22%  Similarity=0.304  Sum_probs=23.4

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      +.+..++|+|+||||||||++.|++..
T Consensus       155 k~g~~VgLVG~~gAGKSTLL~~Lsg~~  181 (416)
T 1udx_A          155 MLIADVGLVGYPNAGKSSLLAAMTRAH  181 (416)
T ss_dssp             CCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence            445779999999999999999998763

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=95.95  E-value=0.0035  Score=62.24  Aligned_cols=28  Identities=18%  Similarity=0.223  Sum_probs=25.2

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      .++.+|.|+|++||||||+++.|++.++
T Consensus       394 q~~~~I~l~GlsGSGKSTiA~~La~~L~  421 (573)
T 1m8p_A          394 TQGFTIFLTGYMNSGKDAIARALQVTLN  421 (573)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             ccceEEEeecCCCCCHHHHHHHHHHHhc
Confidence            4567999999999999999999998875

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=95.95  E-value=0.0017  Score=52.18  Aligned_cols=24  Identities=21%  Similarity=0.084  Sum_probs=21.0

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCC
Q psy8556          39 KVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      -+.|.||+|+|||++++.++...+
T Consensus        29 ~vll~G~~GtGKt~lA~~i~~~~~   52 (143)
T 3co5_A           29 PVFLTGEAGSPFETVARYFHKNGT   52 (143)
T ss_dssp             CEEEEEETTCCHHHHHGGGCCTTS
T ss_pred             cEEEECCCCccHHHHHHHHHHhCC
Confidence            378999999999999999987654

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=95.94  E-value=0.0033  Score=52.94  Aligned_cols=26  Identities=31%  Similarity=0.374  Sum_probs=21.8

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      ++.+++|+||.||||||++..++..+
T Consensus         2 ~g~i~vi~G~~gsGKTT~ll~~~~~~   27 (184)
T 2orw_A            2 SGKLTVITGPMYSGKTTELLSFVEIY   27 (184)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence            46789999999999999997776543

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=95.94  E-value=0.0011  Score=68.53  Aligned_cols=26  Identities=19%  Similarity=0.264  Sum_probs=22.8

Q ss_pred             CCCeEEEEECCCchhHHHHHHH-HHhh
Q psy8556          35 FRKTKVAILGPTASGKSSVALK-ISEY   60 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~-La~~   60 (298)
                      ++|++++|+|+||||||||++. |++.
T Consensus       521 ~~Geiv~I~G~nGSGKSTLl~~~L~g~  547 (842)
T 2vf7_A          521 PLGVMTSVTGVSGSGKSTLVSQALVDA  547 (842)
T ss_dssp             ESSSEEEEECCTTSSHHHHCCCCCHHH
T ss_pred             cCCCEEEEEcCCCcCHHHHHHHHHHHH
Confidence            6788999999999999999996 6544

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=95.93  E-value=0.0034  Score=60.14  Aligned_cols=35  Identities=29%  Similarity=0.563  Sum_probs=28.3

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhC-----CCeEeecCC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYI-----PCEIISIDS   70 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l-----~~~iis~Ds   70 (298)
                      ++.+|+|+|++||||||++..||..+     ...++++|.
T Consensus        98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~  137 (432)
T 2v3c_C           98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT  137 (432)
T ss_dssp             SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence            45789999999999999999999875     245666663

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=95.91  E-value=0.0034  Score=58.45  Aligned_cols=27  Identities=37%  Similarity=0.514  Sum_probs=23.8

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      ++|.++.|.||+|||||||+..++...
T Consensus        59 ~~G~iv~I~G~pGsGKTtLal~la~~~   85 (349)
T 2zr9_A           59 PRGRVIEIYGPESSGKTTVALHAVANA   85 (349)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            478999999999999999999998543

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=95.91  E-value=0.0032  Score=57.12  Aligned_cols=25  Identities=28%  Similarity=0.259  Sum_probs=22.1

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      ++..++|+|++|+|||||++.|.+.
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~   31 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQ   31 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCC
Confidence            3457999999999999999999865

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=95.91  E-value=0.0035  Score=49.74  Aligned_cols=22  Identities=23%  Similarity=0.552  Sum_probs=20.0

Q ss_pred             EEEEECCCchhHHHHHHHHHhh
Q psy8556          39 KVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      -|+++|++|||||||++.+.+.
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999999864

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=95.90  E-value=0.0043  Score=52.66  Aligned_cols=26  Identities=31%  Similarity=0.400  Sum_probs=22.8

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      +...++|+|++|||||||+..|+..+
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            35689999999999999999998764

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=95.88  E-value=0.0045  Score=49.44  Aligned_cols=23  Identities=30%  Similarity=0.406  Sum_probs=20.5

Q ss_pred             eEEEEECCCchhHHHHHHHHHhh
Q psy8556          38 TKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      .-|+|+|++|||||||++.+.+.
T Consensus         6 ~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            6 IKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEEECcCCCCHHHHHHHHHcC
Confidence            45899999999999999999864

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=95.88  E-value=0.0031  Score=59.86  Aligned_cols=52  Identities=19%  Similarity=0.204  Sum_probs=34.9

Q ss_pred             hhcccCchhhhhhc---------cccccccccccCCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          10 RDTETDPQQRQLTA---------DFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        10 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      ..+-.||..+..+.         .++-+.....-.+|+.++|+||+|+|||||+..|++..
T Consensus       138 ~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i  198 (422)
T 3ice_A          138 NLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI  198 (422)
T ss_dssp             TSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred             cccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence            34556776664443         11112223333668899999999999999999998764

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=95.87  E-value=0.0043  Score=53.84  Aligned_cols=22  Identities=27%  Similarity=0.377  Sum_probs=18.5

Q ss_pred             CeEEEEECCCchhHHHHHHHHH
Q psy8556          37 KTKVAILGPTASGKSSVALKIS   58 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La   58 (298)
                      ++.++|+|||||||||++..+.
T Consensus        76 g~~~~i~g~TGsGKTt~~~~~~   97 (235)
T 3llm_A           76 NSVVIIRGATGCGKTTQVPQFI   97 (235)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCcHHhHHHHH
Confidence            5689999999999999766553

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=95.87  E-value=0.0047  Score=50.06  Aligned_cols=24  Identities=33%  Similarity=0.405  Sum_probs=21.0

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhh
Q psy8556          37 KTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      ..-|+|+|++|||||||+..+.+.
T Consensus         8 ~~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            8 ILKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            456899999999999999999764

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=95.86  E-value=0.0048  Score=57.07  Aligned_cols=26  Identities=12%  Similarity=0.139  Sum_probs=24.1

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      ++|.++.|+||+|||||||+..++..
T Consensus       120 ~~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          120 ESMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            67899999999999999999999875

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=95.85  E-value=0.0047  Score=49.98  Aligned_cols=25  Identities=20%  Similarity=0.433  Sum_probs=21.6

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      +..-|+|+|++|||||||++.+.+.
T Consensus         8 ~~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            8 ETHKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            3456899999999999999999865

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=95.85  E-value=0.029  Score=51.89  Aligned_cols=36  Identities=19%  Similarity=0.314  Sum_probs=27.4

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhC-----CCeEeecCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYI-----PCEIISIDS   70 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l-----~~~iis~Ds   70 (298)
                      .+..+|+|+|++|+|||||+..|+..+     ...++..|.
T Consensus        77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp  117 (355)
T 3p32_A           77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDP  117 (355)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCC
Confidence            346789999999999999999998764     234555553

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=95.83  E-value=0.0046  Score=49.86  Aligned_cols=24  Identities=29%  Similarity=0.379  Sum_probs=20.8

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhh
Q psy8556          37 KTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      ..-|+|+|++|+|||||++.+.+.
T Consensus         4 ~~ki~i~G~~~vGKSsl~~~l~~~   27 (175)
T 2nzj_A            4 LYRVVLLGDPGVGKTSLASLFAGK   27 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEEEECCCCccHHHHHHHHhcC
Confidence            346899999999999999999754

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=95.83  E-value=0.0023  Score=61.69  Aligned_cols=28  Identities=25%  Similarity=0.450  Sum_probs=24.2

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      .++.+|+++|.+||||||+++.|++.++
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~   64 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLN   64 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4467899999999999999999998764

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=95.82  E-value=0.0046  Score=49.51  Aligned_cols=24  Identities=42%  Similarity=0.530  Sum_probs=21.0

Q ss_pred             eEEEEECCCchhHHHHHHHHHhhC
Q psy8556          38 TKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      --|+|+|++|||||||++.+.+..
T Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            7 LKVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            458999999999999999998653

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.81  E-value=0.0055  Score=51.78  Aligned_cols=26  Identities=27%  Similarity=0.404  Sum_probs=22.3

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      +...|+|+|++|||||||+..|.+..
T Consensus        11 ~~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           11 YQPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34578999999999999999998754

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=95.81  E-value=0.0015  Score=59.50  Aligned_cols=88  Identities=15%  Similarity=0.115  Sum_probs=55.5

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccc-cccCcCccchHHH---
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLI-DIIEPTKSYSVIQ---  110 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~-~~~~~~e~~s~~~---  110 (298)
                      ..+.+|+|+||   ||+||.+.|...++..        +..-.+.+|..|.+.|..+..||++ +.-.+......+.   
T Consensus       103 ~~~r~ivl~GP---gK~tl~~~L~~~~~~~--------~~~~vs~TTR~~R~gE~~G~dY~Fv~s~eef~~~i~~g~flE  171 (295)
T 1kjw_A          103 HYARPIIILGP---TKDRANDDLLSEFPDK--------FGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIE  171 (295)
T ss_dssp             CSCCCEEEEST---THHHHHHHHHHHCTTT--------EECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEE
T ss_pred             CCCCEEEEECC---CHHHHHHHHHhhCccc--------eeeeeeecccCCCCccccCceeEecCCHHHHHHHHHCCCcEE
Confidence            45678999999   7999999998876411        2233456788888999999998887 4221111111111   


Q ss_pred             -------HHHHHHHhhHHHhhcCCceEEEc
Q psy8556         111 -------FCEDALFSIKNILKKKKLPLLVG  133 (298)
Q Consensus       111 -------f~~~~~~~i~~i~~~~~~~IlvG  133 (298)
                             ++....+.+.++...|+.+|+..
T Consensus       172 ~~~~~g~~YGt~~~~V~~~~~~G~~vildi  201 (295)
T 1kjw_A          172 AGQYNSHLYGTSVQSVREVAEQGKHCILDV  201 (295)
T ss_dssp             EEEETTEEEEEEHHHHHHHHHTTCEEEECC
T ss_pred             EEEEcCcEeeeeHHHHHHHHhcCCeEEEEe
Confidence                   11123345667777888877753

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.81  E-value=0.0044  Score=49.61  Aligned_cols=22  Identities=36%  Similarity=0.622  Sum_probs=19.8

Q ss_pred             eEEEEECCCchhHHHHHHHHHh
Q psy8556          38 TKVAILGPTASGKSSVALKISE   59 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~   59 (298)
                      .-|+|+|++|||||||++.+.+
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            4 YRVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHc
Confidence            3589999999999999999975

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=95.81  E-value=0.0054  Score=55.51  Aligned_cols=33  Identities=12%  Similarity=0.254  Sum_probs=27.2

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIPCEIISID   69 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~D   69 (298)
                      +.++.+.||+|+|||++++.+++.++..++..+
T Consensus        48 ~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~   80 (324)
T 3u61_B           48 PHIILHSPSPGTGKTTVAKALCHDVNADMMFVN   80 (324)
T ss_dssp             CSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEE
T ss_pred             CeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEc
Confidence            467888899999999999999999886655433

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.80  E-value=0.0038  Score=57.34  Aligned_cols=26  Identities=23%  Similarity=0.459  Sum_probs=23.9

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      +..+.|.||+|+|||++++.+++.++
T Consensus        70 ~~~vLl~GppGtGKT~la~~la~~l~   95 (368)
T 3uk6_A           70 GRAVLIAGQPGTGKTAIAMGMAQALG   95 (368)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            46799999999999999999999876

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.80  E-value=0.0047  Score=49.37  Aligned_cols=22  Identities=41%  Similarity=0.650  Sum_probs=19.8

Q ss_pred             EEEEECCCchhHHHHHHHHHhh
Q psy8556          39 KVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      -|+|+|++|||||||+..+.+.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4899999999999999999754

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=95.80  E-value=0.0063  Score=53.77  Aligned_cols=31  Identities=19%  Similarity=0.140  Sum_probs=26.5

Q ss_pred             eEEEEECCCchhHHHHHHHHHhhCCCeEeec
Q psy8556          38 TKVAILGPTASGKSSVALKISEYIPCEIISI   68 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~l~~~iis~   68 (298)
                      .+|+|+|+.||||||++..|...++..++++
T Consensus         2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~   32 (241)
T 1dek_A            2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQL   32 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSCEEECCT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCeEEec
Confidence            4799999999999999999998887666543

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=95.79  E-value=0.0056  Score=48.65  Aligned_cols=23  Identities=30%  Similarity=0.465  Sum_probs=20.3

Q ss_pred             eEEEEECCCchhHHHHHHHHHhh
Q psy8556          38 TKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      --|+|+|++|||||||+..+.+.
T Consensus         4 ~~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            4 YKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            45899999999999999999754

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=95.77  E-value=0.0066  Score=59.03  Aligned_cols=34  Identities=18%  Similarity=0.340  Sum_probs=28.8

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      +.-+.|.||+|+|||++++.++..++..++..+.
T Consensus       238 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~  271 (489)
T 3hu3_A          238 PRGILLYGPPGTGKTLIARAVANETGAFFFLING  271 (489)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEH
T ss_pred             CCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEc
Confidence            4568999999999999999999999877765543

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=95.75  E-value=0.0043  Score=52.00  Aligned_cols=33  Identities=24%  Similarity=0.351  Sum_probs=23.5

Q ss_pred             cccccccCCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          28 IRTGKLLFRKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        28 ~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      .+..+|+....-|+|+|++|||||||+..+.+.
T Consensus        16 ~~~~~m~~~~~ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           16 PRGSHMAAIRKKLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             C-----CCEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cCCCCCcccceEEEEECCCCCCHHHHHHHHHhC
Confidence            334455555567999999999999999999864

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=95.74  E-value=0.005  Score=52.95  Aligned_cols=25  Identities=28%  Similarity=0.314  Sum_probs=22.1

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHh
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISE   59 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~   59 (298)
                      ++|.++.|.|++|+|||+|+..++-
T Consensus        28 ~~G~l~~i~G~pG~GKT~l~l~~~~   52 (251)
T 2zts_A           28 PEGTTVLLTGGTGTGKTTFAAQFIY   52 (251)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            5688999999999999999988763

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=95.74  E-value=0.005  Score=50.82  Aligned_cols=25  Identities=24%  Similarity=0.294  Sum_probs=21.7

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      +...|+|+|++|||||||++.|.+.
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3467899999999999999999764

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=95.73  E-value=0.0045  Score=49.58  Aligned_cols=22  Identities=27%  Similarity=0.540  Sum_probs=19.9

Q ss_pred             EEEEECCCchhHHHHHHHHHhh
Q psy8556          39 KVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      -|+|+|++|||||||+..+.+.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            5899999999999999999854

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=95.73  E-value=0.0052  Score=49.03  Aligned_cols=23  Identities=26%  Similarity=0.468  Sum_probs=20.2

Q ss_pred             eEEEEECCCchhHHHHHHHHHhh
Q psy8556          38 TKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      --|+|+|++|||||||++.+.+.
T Consensus         4 ~ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            4 YKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            35899999999999999999763

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=95.73  E-value=0.0043  Score=51.15  Aligned_cols=26  Identities=15%  Similarity=0.372  Sum_probs=22.4

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      ++...|+|+|++|+|||||++.+.+.
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcC
Confidence            45567999999999999999999754

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=95.73  E-value=0.0052  Score=49.26  Aligned_cols=23  Identities=39%  Similarity=0.573  Sum_probs=20.5

Q ss_pred             eEEEEECCCchhHHHHHHHHHhh
Q psy8556          38 TKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      .-|+|+|++|||||||++.+.+.
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            7 FKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            45899999999999999999864

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=95.72  E-value=0.0053  Score=49.67  Aligned_cols=23  Identities=35%  Similarity=0.385  Sum_probs=20.4

Q ss_pred             eEEEEECCCchhHHHHHHHHHhh
Q psy8556          38 TKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      .-|+|+|++|||||||++.+.+.
T Consensus         8 ~~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            8 FKVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            45899999999999999999764

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.72  E-value=0.0049  Score=56.18  Aligned_cols=25  Identities=16%  Similarity=0.270  Sum_probs=22.0

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      +.-+.|.||+|+|||+|+..++..+
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~  176 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHEL  176 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHH
Confidence            4678999999999999999998754

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=95.71  E-value=0.0057  Score=52.07  Aligned_cols=26  Identities=19%  Similarity=0.325  Sum_probs=22.7

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      +...|+|+|.+|||||||+..++...
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            45679999999999999999998764

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=95.68  E-value=0.0035  Score=61.90  Aligned_cols=28  Identities=21%  Similarity=0.236  Sum_probs=24.8

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      +.+.+|+|+|++||||||+++.|++.++
T Consensus       370 ~~~~~I~l~G~~GsGKSTia~~La~~L~  397 (546)
T 2gks_A          370 KQGFCVWLTGLPCAGKSTIAEILATMLQ  397 (546)
T ss_dssp             GCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             ccceEEEccCCCCCCHHHHHHHHHHHhh
Confidence            3467899999999999999999998765

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=95.68  E-value=0.0071  Score=49.12  Aligned_cols=24  Identities=29%  Similarity=0.430  Sum_probs=21.0

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhh
Q psy8556          37 KTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      .--|+|+|++|+|||||+..+.+.
T Consensus         7 ~~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            7 ELRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            346899999999999999999864

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=95.67  E-value=0.0049  Score=49.47  Aligned_cols=22  Identities=32%  Similarity=0.480  Sum_probs=19.5

Q ss_pred             EEEEECCCchhHHHHHHHHHhh
Q psy8556          39 KVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      -|+|+|++|||||||+..+.+.
T Consensus         4 ki~ivG~~~~GKSsli~~l~~~   25 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGGL   25 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            4899999999999999999743

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=95.65  E-value=0.005  Score=60.14  Aligned_cols=52  Identities=15%  Similarity=0.096  Sum_probs=38.1

Q ss_pred             HHHHhhhcccCchhhhhhccccc-cccccccCCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556           5 KDVLDRDTETDPQQRQLTADFRR-IRTGKLLFRKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      ..+.....+.+-+++..+..+.. ...+      .-+.|.||+|+|||+|++.|+..++
T Consensus        14 ~~l~~~l~~~ivGq~~~i~~l~~al~~~------~~VLL~GpPGtGKT~LAraLa~~l~   66 (500)
T 3nbx_X           14 SRLSSSLEKGLYERSHAIRLCLLAALSG------ESVFLLGPPGIAKSLIARRLKFAFQ   66 (500)
T ss_dssp             HHHHHHHHTTCSSCHHHHHHHHHHHHHT------CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHhcC------CeeEeecCchHHHHHHHHHHHHHHh
Confidence            44555667778777776665544 2222      2488999999999999999998874

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=95.65  E-value=0.0063  Score=49.49  Aligned_cols=25  Identities=28%  Similarity=0.369  Sum_probs=21.4

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      +..-|+|+|++|||||||++.|.+.
T Consensus        17 ~~~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           17 ALHKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhC
Confidence            3456899999999999999999864

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=95.65  E-value=0.0051  Score=58.87  Aligned_cols=25  Identities=24%  Similarity=0.416  Sum_probs=22.6

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      +..++|.||+|+|||||++.+++.+
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l  154 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYV  154 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4578999999999999999999876

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=95.63  E-value=0.0065  Score=58.27  Aligned_cols=27  Identities=22%  Similarity=0.400  Sum_probs=24.5

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      .+|.+++|+|++|+|||||+..++...
T Consensus       201 ~~G~liiI~G~pG~GKTtl~l~ia~~~  227 (454)
T 2r6a_A          201 QRSDLIIVAARPSVGKTAFALNIAQNV  227 (454)
T ss_dssp             CTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            678999999999999999999998754

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=95.62  E-value=0.0049  Score=49.25  Aligned_cols=24  Identities=38%  Similarity=0.559  Sum_probs=20.8

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhh
Q psy8556          37 KTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      ..-|+|+|++|+|||||+..+.+.
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            6 QFKLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcC
Confidence            346899999999999999999863

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=95.62  E-value=0.0056  Score=50.95  Aligned_cols=26  Identities=19%  Similarity=0.310  Sum_probs=20.7

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      .+...|+|+|++|||||||++.+.+.
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcC
Confidence            34456899999999999999999863

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=95.62  E-value=0.0056  Score=50.36  Aligned_cols=25  Identities=20%  Similarity=0.391  Sum_probs=21.5

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      +..-|+|+|++|+|||||++.+.+.
T Consensus         6 ~~~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            6 VKCKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEEEECCCCCCHHHHHHHHhcC
Confidence            3456899999999999999999864

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=95.61  E-value=0.0059  Score=50.12  Aligned_cols=23  Identities=30%  Similarity=0.365  Sum_probs=20.6

Q ss_pred             eEEEEECCCchhHHHHHHHHHhh
Q psy8556          38 TKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      ..|+|+|++|||||||++.+.+.
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           24 GEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            46899999999999999999764

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=95.61  E-value=0.0071  Score=55.34  Aligned_cols=27  Identities=22%  Similarity=0.341  Sum_probs=24.2

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      ++|.++.|.||+|||||+|+..++...
T Consensus       105 ~~G~i~~i~G~~GsGKT~la~~la~~~  131 (324)
T 2z43_A          105 ETRTMTEFFGEFGSGKTQLCHQLSVNV  131 (324)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence            568899999999999999999998753

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=95.61  E-value=0.0023  Score=66.95  Aligned_cols=23  Identities=35%  Similarity=0.369  Sum_probs=21.3

Q ss_pred             CCCeEEEEECCCchhHHHHHHHH
Q psy8556          35 FRKTKVAILGPTASGKSSVALKI   57 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~L   57 (298)
                      ++|++++|+|+||||||||++.|
T Consensus       648 ~~Geiv~I~G~nGSGKSTLl~~l  670 (972)
T 2r6f_A          648 PLGTFVAVTGVSGSGKSTLVNEV  670 (972)
T ss_dssp             ESSSEEECCBCTTSSHHHHHTTT
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHH
Confidence            67889999999999999999985

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=95.61  E-value=0.0058  Score=51.74  Aligned_cols=25  Identities=20%  Similarity=0.325  Sum_probs=21.6

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      ....|+|+|++|||||||++.|.+.
T Consensus        28 ~~~~i~v~G~~~~GKSslin~l~~~   52 (223)
T 4dhe_A           28 VQPEIAFAGRSNAGKSTAINVLCNQ   52 (223)
T ss_dssp             CSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            3457899999999999999999764

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=95.59  E-value=0.0076  Score=49.15  Aligned_cols=24  Identities=21%  Similarity=0.419  Sum_probs=21.0

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhh
Q psy8556          37 KTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      ..-|+|+|++|||||||++.+...
T Consensus        18 ~~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           18 TYKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            346899999999999999999864

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=95.58  E-value=0.0065  Score=53.41  Aligned_cols=25  Identities=24%  Similarity=0.387  Sum_probs=22.1

Q ss_pred             eEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          38 TKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      .-+.|.||+|+|||++++.++...+
T Consensus        30 ~~vll~G~~GtGKt~la~~i~~~~~   54 (265)
T 2bjv_A           30 KPVLIIGERGTGKELIASRLHYLSS   54 (265)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHHTST
T ss_pred             CCEEEECCCCCcHHHHHHHHHHhcC
Confidence            3478999999999999999998764

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=95.58  E-value=0.0063  Score=54.00  Aligned_cols=25  Identities=20%  Similarity=0.325  Sum_probs=21.7

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      ...|+|+|++|||||||++.|.+..
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~   27 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLR   27 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTC
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468999999999999999998753

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=95.58  E-value=0.0079  Score=48.65  Aligned_cols=24  Identities=33%  Similarity=0.501  Sum_probs=20.9

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhh
Q psy8556          37 KTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      .--|+|+|++|||||||+..+.+.
T Consensus         6 ~~ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            6 QLKIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred             eEEEEEECcCCCCHHHHHHHHHhC
Confidence            456899999999999999999754

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=95.57  E-value=0.0076  Score=51.29  Aligned_cols=27  Identities=26%  Similarity=0.194  Sum_probs=24.0

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      .++.+++++||.||||||.+..++..+
T Consensus         6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~   32 (191)
T 1xx6_A            6 DHGWVEVIVGPMYSGKSEELIRRIRRA   32 (191)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            558899999999999999999888765

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=95.57  E-value=0.007  Score=58.34  Aligned_cols=23  Identities=22%  Similarity=0.469  Sum_probs=21.0

Q ss_pred             EEEEECCCchhHHHHHHHHHhhC
Q psy8556          39 KVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      -+.|+||+|+|||++++.|++.+
T Consensus       203 ~~LL~G~pG~GKT~la~~la~~l  225 (468)
T 3pxg_A          203 NPVLIGEPGVGKTAIAEGLAQQI  225 (468)
T ss_dssp             EEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CeEEECCCCCCHHHHHHHHHHHH
Confidence            46899999999999999999886

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=95.56  E-value=0.0079  Score=49.81  Aligned_cols=28  Identities=29%  Similarity=0.284  Sum_probs=22.5

Q ss_pred             ccCCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          33 LLFRKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        33 ~~~kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      .+.+.--|+|+|++|||||||++.+...
T Consensus        16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           16 FQGPELKVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             CCCCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred             CCCCeeEEEEECCCCCCHHHHHHHHhcC
Confidence            3344567999999999999999888754

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=95.54  E-value=0.0065  Score=49.65  Aligned_cols=23  Identities=30%  Similarity=0.411  Sum_probs=20.6

Q ss_pred             eEEEEECCCchhHHHHHHHHHhh
Q psy8556          38 TKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      .-|+|+|++|||||||+..+.+.
T Consensus        12 ~ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           12 IKFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999999863

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=95.54  E-value=0.0065  Score=49.99  Aligned_cols=23  Identities=22%  Similarity=0.501  Sum_probs=20.8

Q ss_pred             eEEEEECCCchhHHHHHHHHHhh
Q psy8556          38 TKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      .-|+|+|++|||||||+..|++.
T Consensus        22 ~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           22 YKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            46899999999999999999864

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=95.54  E-value=0.0042  Score=49.73  Aligned_cols=22  Identities=36%  Similarity=0.474  Sum_probs=19.5

Q ss_pred             EEEEECCCchhHHHHHHHHHhh
Q psy8556          39 KVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      -|+|+|++|+|||||++.+.+.
T Consensus         4 ki~~vG~~~~GKSsli~~l~~~   25 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGGV   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCc
Confidence            4899999999999999999653

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=95.54  E-value=0.0081  Score=48.79  Aligned_cols=25  Identities=24%  Similarity=0.348  Sum_probs=21.3

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      +..-|+|+|++|+|||||+..+...
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            7 RFIKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC
Confidence            3456899999999999999999754

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=95.54  E-value=0.0067  Score=48.38  Aligned_cols=21  Identities=24%  Similarity=0.445  Sum_probs=19.2

Q ss_pred             EEEECCCchhHHHHHHHHHhh
Q psy8556          40 VAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~~   60 (298)
                      |+|+|++|+|||||+..+.+.
T Consensus         3 i~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            3 ILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            789999999999999999754

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=95.53  E-value=0.0049  Score=49.86  Aligned_cols=23  Identities=35%  Similarity=0.583  Sum_probs=20.2

Q ss_pred             eEEEEECCCchhHHHHHHHHHhh
Q psy8556          38 TKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      .-|+|+|++|||||||++.|.+.
T Consensus        10 ~~i~v~G~~~~GKssl~~~l~~~   32 (181)
T 3tw8_B           10 FKLLIIGDSGVGKSSLLLRFADN   32 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHCSC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999999653

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=95.53  E-value=0.0075  Score=49.71  Aligned_cols=24  Identities=21%  Similarity=0.425  Sum_probs=21.1

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhh
Q psy8556          37 KTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      ..-|+|+|++|+|||||++.|.+.
T Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           22 MFKLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Confidence            346899999999999999999864

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=95.52  E-value=0.0091  Score=58.34  Aligned_cols=36  Identities=22%  Similarity=0.380  Sum_probs=27.2

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhC-----CCeEeecCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYI-----PCEIISIDS   70 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l-----~~~iis~Ds   70 (298)
                      .++.+|+|+|++||||||++..|+..+     ...++++|.
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~  139 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADT  139 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence            457799999999999999999999543     245666663

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.52  E-value=0.0062  Score=51.26  Aligned_cols=30  Identities=20%  Similarity=0.257  Sum_probs=24.2

Q ss_pred             ccccCCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          31 GKLLFRKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        31 ~~~~~kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      ..++.+..-|+|+|++|||||||+..+.+.
T Consensus        19 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           19 YFQSMIRKKLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             CGGGSEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             ccccccCcEEEEECcCCCCHHHHHHHHhcC
Confidence            344444567999999999999999999864

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=95.51  E-value=0.0068  Score=50.08  Aligned_cols=23  Identities=22%  Similarity=0.466  Sum_probs=20.6

Q ss_pred             eEEEEECCCchhHHHHHHHHHhh
Q psy8556          38 TKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      .-|+|+|++|+|||||++.|.+.
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           26 FKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            46899999999999999999864

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=95.50  E-value=0.0072  Score=52.78  Aligned_cols=27  Identities=19%  Similarity=0.128  Sum_probs=23.1

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      .++.++++.||+||||||++..++..+
T Consensus        10 ~~G~i~litG~mGsGKTT~ll~~~~r~   36 (223)
T 2b8t_A           10 KIGWIEFITGPMFAGKTAELIRRLHRL   36 (223)
T ss_dssp             -CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence            457899999999999999998887665

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=95.50  E-value=0.0076  Score=54.99  Aligned_cols=26  Identities=31%  Similarity=0.345  Sum_probs=23.7

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      .+|.++.|.|++|+|||||+..+|..
T Consensus        66 ~~G~l~li~G~pG~GKTtl~l~ia~~   91 (315)
T 3bh0_A           66 KRRNFVLIAARPSMGKTAFALKQAKN   91 (315)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence            67899999999999999999999854

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=95.49  E-value=0.0068  Score=49.47  Aligned_cols=23  Identities=22%  Similarity=0.517  Sum_probs=20.5

Q ss_pred             eEEEEECCCchhHHHHHHHHHhh
Q psy8556          38 TKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      --|+|+|++|||||||+..|.+.
T Consensus         5 ~ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            5 YKLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            45899999999999999999864

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=95.47  E-value=0.0063  Score=49.12  Aligned_cols=23  Identities=26%  Similarity=0.351  Sum_probs=20.3

Q ss_pred             eEEEEECCCchhHHHHHHHHHhh
Q psy8556          38 TKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      .-|+|+|++|||||||+..+.+.
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            46899999999999999999753

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=95.47  E-value=0.0084  Score=49.80  Aligned_cols=24  Identities=29%  Similarity=0.393  Sum_probs=20.9

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhh
Q psy8556          37 KTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      ..-|+|+|++|||||||+..+.+.
T Consensus        14 ~~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           14 LHKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            456899999999999999999754

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=95.47  E-value=0.008  Score=49.54  Aligned_cols=26  Identities=19%  Similarity=0.369  Sum_probs=21.5

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      .+..-|+|+|++|||||||++.+.+.
T Consensus        18 ~~~~ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           18 SRIFKIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcC
Confidence            34457999999999999999999753

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.44  E-value=0.006  Score=55.44  Aligned_cols=23  Identities=26%  Similarity=0.530  Sum_probs=21.2

Q ss_pred             EEEECCCchhHHHHHHHHHhhCC
Q psy8556          40 VAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      +.|.||+|+||||+++.+++.+.
T Consensus        61 ~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            88999999999999999998764

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=95.42  E-value=0.0094  Score=61.40  Aligned_cols=36  Identities=17%  Similarity=0.282  Sum_probs=30.6

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      +.++=|.|.||+|+|||+|++.+|+.++..++..+.
T Consensus       236 ~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~  271 (806)
T 3cf2_A          236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLING  271 (806)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEh
Confidence            345668999999999999999999999988776654

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.39  E-value=0.0058  Score=49.79  Aligned_cols=24  Identities=21%  Similarity=0.534  Sum_probs=21.0

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHH
Q psy8556          35 FRKTKVAILGPTASGKSSVALKIS   58 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La   58 (298)
                      ++..-|+|+|++|||||||+..+.
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~   39 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQ   39 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHh
Confidence            445679999999999999999986

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.39  E-value=0.01  Score=49.34  Aligned_cols=26  Identities=27%  Similarity=0.427  Sum_probs=21.7

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      .+..-|+|+|++|+|||||+..+.+.
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            34456999999999999999999864

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=95.38  E-value=0.0081  Score=48.72  Aligned_cols=24  Identities=33%  Similarity=0.584  Sum_probs=20.8

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhh
Q psy8556          37 KTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      ..-|+|+|++|||||||++.+.+.
T Consensus        12 ~~ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           12 NAKLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            346899999999999999999764

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=95.37  E-value=0.0058  Score=50.01  Aligned_cols=22  Identities=18%  Similarity=0.406  Sum_probs=19.5

Q ss_pred             EEEEECCCchhHHHHHHHHHhh
Q psy8556          39 KVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      -|+|+|++|||||||+..+.+.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            3789999999999999999753

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=95.35  E-value=0.0084  Score=51.43  Aligned_cols=26  Identities=23%  Similarity=0.392  Sum_probs=23.5

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      +++|+|=|+-||||||+++.|+..+.
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~~L~   27 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYHRLV   27 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence            57899999999999999999998774

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=95.35  E-value=0.006  Score=55.46  Aligned_cols=23  Identities=26%  Similarity=0.586  Sum_probs=21.8

Q ss_pred             EEEECCCchhHHHHHHHHHhhCC
Q psy8556          40 VAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      +.|.||+|+|||++++.++..++
T Consensus        48 vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           48 VLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             EEEECCGGGCTTHHHHHHHHHSC
T ss_pred             EEEECCCCccHHHHHHHHHHhCc
Confidence            88999999999999999999876

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=95.34  E-value=0.0088  Score=48.99  Aligned_cols=26  Identities=23%  Similarity=0.383  Sum_probs=21.7

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      ++..-|+|+|++|||||||++.+.+.
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~   41 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGE   41 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence            34567999999999999999999754

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=95.34  E-value=0.0082  Score=52.58  Aligned_cols=25  Identities=24%  Similarity=0.412  Sum_probs=21.7

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      +...|+|+|++|||||||+..|.+.
T Consensus        21 ~~~~I~lvG~~g~GKStl~n~l~~~   45 (260)
T 2xtp_A           21 SELRIILVGKTGTGKSAAGNSILRK   45 (260)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCC
Confidence            3467999999999999999999764

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=95.34  E-value=0.0086  Score=54.94  Aligned_cols=45  Identities=22%  Similarity=0.176  Sum_probs=33.3

Q ss_pred             cccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE
Q psy8556          28 IRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV   73 (298)
Q Consensus        28 ~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv   73 (298)
                      +++....-.|.-+.|.|+||+||||++..|.. .+..+++-|...+
T Consensus       138 ~H~~~v~~~g~gvli~G~sG~GKStlal~l~~-~G~~lv~DD~v~i  182 (312)
T 1knx_A          138 IHGVLLEVFGVGVLLTGRSGIGKSECALDLIN-KNHLFVGDDAIEI  182 (312)
T ss_dssp             EEEEEEEETTEEEEEEESSSSSHHHHHHHHHT-TTCEEEEEEEEEE
T ss_pred             eEEEEEEECCEEEEEEcCCCCCHHHHHHHHHH-cCCEEEeCCEEEE
Confidence            44455556677899999999999999999865 4566776555444

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=95.33  E-value=0.0069  Score=56.65  Aligned_cols=23  Identities=30%  Similarity=0.452  Sum_probs=20.7

Q ss_pred             eEEEEECCCchhHHHHHHHHHhh
Q psy8556          38 TKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      ++++|+|+||||||||++.|++.
T Consensus       180 ~~V~lvG~~naGKSTLln~L~~~  202 (364)
T 2qtf_A          180 PSIGIVGYTNSGKTSLFNSLTGL  202 (364)
T ss_dssp             CEEEEECBTTSSHHHHHHHHHCC
T ss_pred             cEEEEECCCCCCHHHHHHHHHCC
Confidence            45999999999999999999864

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.31  E-value=0.0093  Score=48.32  Aligned_cols=24  Identities=21%  Similarity=0.433  Sum_probs=20.9

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhh
Q psy8556          37 KTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      ..-|+|+|++|+|||||+..+.+.
T Consensus        10 ~~~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A           10 AFKVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhC
Confidence            346899999999999999999764

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=95.30  E-value=0.0077  Score=49.19  Aligned_cols=23  Identities=26%  Similarity=0.394  Sum_probs=20.5

Q ss_pred             eEEEEECCCchhHHHHHHHHHhh
Q psy8556          38 TKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      .-|+|+|++|||||||++.+.+.
T Consensus        11 ~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           11 FKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            46899999999999999999764

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=95.30  E-value=0.0091  Score=57.20  Aligned_cols=36  Identities=19%  Similarity=0.326  Sum_probs=27.8

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhC----C--CeEeecCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYI----P--CEIISIDS   70 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l----~--~~iis~Ds   70 (298)
                      .++.+|+++|++||||||++..||..+    +  .-++.+|.
T Consensus        98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~  139 (433)
T 2xxa_A           98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV  139 (433)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence            457899999999999999999998554    2  34555663

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=95.29  E-value=0.0098  Score=48.77  Aligned_cols=25  Identities=32%  Similarity=0.432  Sum_probs=21.8

Q ss_pred             eEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          38 TKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      .-|+|+|++|+|||||++.+.+.+.
T Consensus        15 ~ki~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           15 FKIVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred             cEEEEECCCCCCHHHHHHHHHhhcc
Confidence            4689999999999999998887664

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=95.29  E-value=0.0097  Score=50.95  Aligned_cols=25  Identities=28%  Similarity=0.331  Sum_probs=21.5

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      +...|+|+|++|+|||||+..|.+.
T Consensus        28 ~~~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           28 HKKTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3567999999999999999999753

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=95.29  E-value=0.0099  Score=54.68  Aligned_cols=28  Identities=11%  Similarity=0.026  Sum_probs=24.9

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      ..++..+.|.||+|+|||++++.++..+
T Consensus        42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L   69 (318)
T 3te6_A           42 SSQNKLFYITNADDSTKFQLVNDVMDEL   69 (318)
T ss_dssp             TTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            3457789999999999999999999887

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=95.29  E-value=0.0061  Score=63.07  Aligned_cols=22  Identities=41%  Similarity=0.477  Sum_probs=19.9

Q ss_pred             CCCeEEEEECCCchhHHHHHHH
Q psy8556          35 FRKTKVAILGPTASGKSSVALK   56 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~   56 (298)
                      +++++++|+|.||||||||+..
T Consensus        34 P~~~l~viTGvSGSGKSSLafd   55 (842)
T 2vf7_A           34 PRDALVVFTGVSGSGKSSLAFG   55 (842)
T ss_dssp             ESSSEEEEESSTTSSHHHHHTT
T ss_pred             cCCCEEEEECCCCCCHHHHHHH
Confidence            7789999999999999999853

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=95.29  E-value=0.0078  Score=54.77  Aligned_cols=26  Identities=15%  Similarity=0.140  Sum_probs=23.7

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      ++|.++.|.||+|||||+|+..++..
T Consensus        96 ~~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           96 ESQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            57889999999999999999999864

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=95.28  E-value=0.0017  Score=59.06  Aligned_cols=87  Identities=17%  Similarity=0.116  Sum_probs=54.8

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccC-cCccchH-----
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIE-PTKSYSV-----  108 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~-~~e~~s~-----  108 (298)
                      ..++.|+|+||   ||+||...|....+..        +...++.+|..|...|..++.+|++...+ .......     
T Consensus        98 ~~~RpvVl~Gp---~K~tl~~~Ll~~~p~~--------f~~sVs~TTR~pR~gE~dG~dY~Fv~s~e~fe~~i~~~~flE  166 (292)
T 3tvt_A           98 NYTRPVIILGP---LKDRINDDLISEYPDK--------FGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLFIE  166 (292)
T ss_dssp             SSCCCEEEEST---THHHHHHHHHHHCTTT--------EECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEE
T ss_pred             CCCCeEEEeCC---CHHHHHHHHHHhChhh--------ccccccCCccCCcCCccCCccccccCCHHHHHHHHhcCceEE
Confidence            34567889999   4999999999887522        22345667889999999999998873221 0000000     


Q ss_pred             -----HHHHHHHHHhhHHHhhcCCceEEE
Q psy8556         109 -----IQFCEDALFSIKNILKKKKLPLLV  132 (298)
Q Consensus       109 -----~~f~~~~~~~i~~i~~~~~~~Ilv  132 (298)
                           +.++....+.+.++.+.|+.+|+.
T Consensus       167 ~a~~~gn~YGT~~~~V~~~~~~gk~viLd  195 (292)
T 3tvt_A          167 AGQYNDNLYGTSVASVREVAEKGKHCILD  195 (292)
T ss_dssp             EEEETTEEEEEEHHHHHHHHHHTCEEEEC
T ss_pred             EEEEccceeEEehHHHHHHHHcCCcEEEe
Confidence                 111112244566777788888773

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=95.27  E-value=0.011  Score=49.32  Aligned_cols=26  Identities=27%  Similarity=0.450  Sum_probs=21.5

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      ++..-|+|+|++|+|||||+..+.+.
T Consensus        26 ~~~~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           26 QKAYKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence            44567999999999999999999764

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=95.25  E-value=0.01  Score=49.38  Aligned_cols=25  Identities=32%  Similarity=0.340  Sum_probs=21.6

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      ..-|+|+|++|+|||||+..|.+..
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A            8 LLKVIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCC
Confidence            4568999999999999999997653

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=95.24  E-value=0.01  Score=54.36  Aligned_cols=46  Identities=15%  Similarity=0.206  Sum_probs=34.2

Q ss_pred             cCchhhhhhccccc-cccccccCCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          14 TDPQQRQLTADFRR-IRTGKLLFRKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        14 ~~~~~~~~~~~~~~-~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      -||-+......+.. +..+.   -+..+.+.||.|+|||++++.+++.+.
T Consensus         3 ~~pw~~~~~~~l~~~i~~~~---~~~a~L~~G~~G~GKt~~a~~la~~l~   49 (334)
T 1a5t_A            3 WYPWLRPDFEKLVASYQAGR---GHHALLIQALPGMGDDALIYALSRYLL   49 (334)
T ss_dssp             CCGGGHHHHHHHHHHHHTTC---CCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCCchHHHHHHHHHHHHcCC---cceeEEEECCCCchHHHHHHHHHHHHh
Confidence            37777766555544 33333   256799999999999999999999875

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=95.23  E-value=0.0065  Score=63.42  Aligned_cols=20  Identities=35%  Similarity=0.341  Sum_probs=18.6

Q ss_pred             CCCeEEEEECCCchhHHHHH
Q psy8556          35 FRKTKVAILGPTASGKSSVA   54 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa   54 (298)
                      ++|++++|+||||||||||+
T Consensus       608 ~~Geiv~I~G~SGSGKSTLl  627 (916)
T 3pih_A          608 PLGVFVCVTGVSGSGKSSLV  627 (916)
T ss_dssp             ESSSEEEEECSTTSSHHHHH
T ss_pred             cCCcEEEEEccCCCChhhhH
Confidence            66889999999999999997

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=95.23  E-value=0.0095  Score=49.05  Aligned_cols=23  Identities=26%  Similarity=0.515  Sum_probs=20.7

Q ss_pred             eEEEEECCCchhHHHHHHHHHhh
Q psy8556          38 TKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      .-|+|+|++|+|||||++.|.+.
T Consensus        17 ~ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           17 FKLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            46899999999999999999864

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=95.22  E-value=0.0084  Score=55.54  Aligned_cols=27  Identities=22%  Similarity=0.281  Sum_probs=23.0

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      .....++|+|++|+|||||++.|++..
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~  191 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAK  191 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            346689999999999999999997643

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=95.20  E-value=0.0098  Score=48.36  Aligned_cols=23  Identities=22%  Similarity=0.407  Sum_probs=20.3

Q ss_pred             eEEEEECCCchhHHHHHHHHHhh
Q psy8556          38 TKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      --|+|+|++|+|||||+..+.+.
T Consensus         6 ~~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            6 IKCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            45899999999999999999753

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.19  E-value=0.012  Score=48.54  Aligned_cols=24  Identities=29%  Similarity=0.490  Sum_probs=21.0

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhh
Q psy8556          37 KTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      ..-|+|+|++|||||||+..|.+.
T Consensus         8 ~~ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A            8 DYRVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCcHHHHHHHHHcC
Confidence            356899999999999999999763

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=95.19  E-value=0.0085  Score=54.44  Aligned_cols=26  Identities=27%  Similarity=0.331  Sum_probs=22.4

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      ++.-.|+|+|++|+|||||++.|.+.
T Consensus         8 ~~~g~v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A            8 MKVGYVAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            44567999999999999999999864

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=95.18  E-value=0.0094  Score=55.74  Aligned_cols=24  Identities=25%  Similarity=0.160  Sum_probs=20.6

Q ss_pred             eEEEEECCCchhHHHHHHHHHhhC
Q psy8556          38 TKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      .-++|+|||||||||+++.++..+
T Consensus        36 ~~~~i~G~~G~GKs~~~~~~~~~~   59 (392)
T 4ag6_A           36 SNWTILAKPGAGKSFTAKMLLLRE   59 (392)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEcCCCCCHHHHHHHHHHHH
Confidence            347899999999999999998653

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=95.18  E-value=0.011  Score=56.50  Aligned_cols=25  Identities=36%  Similarity=0.347  Sum_probs=22.3

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      ...++|+|++|||||||++.|++..
T Consensus       180 ~~kvaivG~~gvGKSTLln~l~g~~  204 (439)
T 1mky_A          180 AIKVAIVGRPNVGKSTLFNAILNKE  204 (439)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTST
T ss_pred             CceEEEECCCCCCHHHHHHHHhCCc
Confidence            4579999999999999999998764

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=95.17  E-value=0.011  Score=49.21  Aligned_cols=27  Identities=26%  Similarity=0.326  Sum_probs=20.7

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      ..+..-|+|+|++|+|||||+..+.+.
T Consensus        17 ~~~~~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           17 EGRGVKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhC
Confidence            344567899999999999999999753

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=95.16  E-value=0.011  Score=49.69  Aligned_cols=24  Identities=21%  Similarity=0.299  Sum_probs=20.7

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhh
Q psy8556          37 KTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      ...|+|+|++|+|||||+..+.+.
T Consensus         7 ~~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            7 QRAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            456899999999999999999864

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=95.14  E-value=0.0092  Score=49.46  Aligned_cols=24  Identities=38%  Similarity=0.545  Sum_probs=21.0

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhh
Q psy8556          37 KTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      ..-|+|+|++|+|||||++.+.+.
T Consensus        23 ~~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           23 ELKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcC
Confidence            346899999999999999999764

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=95.14  E-value=0.0081  Score=48.89  Aligned_cols=23  Identities=43%  Similarity=0.645  Sum_probs=20.4

Q ss_pred             CeEEEEECCCchhHHHHHHHHHh
Q psy8556          37 KTKVAILGPTASGKSSVALKISE   59 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~   59 (298)
                      ..-|+|+|++|+|||||+..+..
T Consensus         6 ~~ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            6 SRKIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEECcCCCCHHHHHHHHHc
Confidence            34689999999999999999984

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.13  E-value=0.012  Score=48.44  Aligned_cols=26  Identities=27%  Similarity=0.450  Sum_probs=22.0

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      ++..-|+|+|++|||||||++.+.+.
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcC
Confidence            34567999999999999999999843

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=95.12  E-value=0.011  Score=48.90  Aligned_cols=23  Identities=35%  Similarity=0.509  Sum_probs=20.5

Q ss_pred             eEEEEECCCchhHHHHHHHHHhh
Q psy8556          38 TKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      --|+|+|++|+|||||+..+.+.
T Consensus        22 ~ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           22 FKYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            46899999999999999999864

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=95.10  E-value=0.015  Score=50.69  Aligned_cols=36  Identities=19%  Similarity=0.471  Sum_probs=27.9

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhC----CCeEeecCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYI----PCEIISIDS   70 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l----~~~iis~Ds   70 (298)
                      .+..+++++|..||||||++..|+..+    ...++..|.
T Consensus        12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~   51 (262)
T 1yrb_A           12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDT   51 (262)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCS
T ss_pred             cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            456899999999999999999998543    244566664

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.08  E-value=0.013  Score=48.96  Aligned_cols=26  Identities=23%  Similarity=0.363  Sum_probs=21.2

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      ....-|+|+|++|+|||||+..|.+.
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhC
Confidence            33457899999999999999999854

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=95.07  E-value=0.011  Score=54.16  Aligned_cols=26  Identities=19%  Similarity=0.261  Sum_probs=23.2

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      +..+.|.||+|+||||+++.+++.++
T Consensus        38 ~~~~ll~G~~G~GKT~la~~la~~l~   63 (373)
T 1jr3_A           38 HHAYLFSGTRGVGKTSIARLLAKGLN   63 (373)
T ss_dssp             CSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            45789999999999999999998775

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=95.06  E-value=0.011  Score=60.23  Aligned_cols=31  Identities=39%  Similarity=0.592  Sum_probs=25.0

Q ss_pred             EEEEECCCchhHHHHHHHHHhhC---CCeEeecC
Q psy8556          39 KVAILGPTASGKSSVALKISEYI---PCEIISID   69 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l---~~~iis~D   69 (298)
                      .+.|+||+|+|||++++.|+..+   +..++..+
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~  556 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESIFGDEESMIRID  556 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEe
Confidence            58999999999999999999886   33444444

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=95.04  E-value=0.014  Score=59.39  Aligned_cols=32  Identities=28%  Similarity=0.534  Sum_probs=27.5

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          39 KVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      .+.|+||+|+|||++++.|+..++..++..|.
T Consensus       490 ~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~  521 (758)
T 1r6b_X          490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDM  521 (758)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhcCCEEEEec
Confidence            68999999999999999999998877665553

>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*

Probab=95.03  E-value=0.0079  Score=55.73  Aligned_cols=30  Identities=13%  Similarity=0.158  Sum_probs=26.5

Q ss_pred             ccCCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          33 LLFRKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        33 ~~~kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      +..++.+|+|=|+=||||||+++.|+..++
T Consensus         3 ~~~~~~fI~~EG~dGaGKTT~~~~La~~L~   32 (334)
T 1p6x_A            3 HMVTIVRIYLDGVYGIGKSTTGRVMASAAS   32 (334)
T ss_dssp             CEEEEEEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            345678999999999999999999998875

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=95.02  E-value=0.012  Score=48.64  Aligned_cols=25  Identities=20%  Similarity=0.309  Sum_probs=21.5

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      +..-|+|+|++|+|||||++.+.+.
T Consensus        21 ~~~ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           21 EEMELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CccEEEEECCCCCCHHHHHHHHHcC
Confidence            3456899999999999999999854

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=95.02  E-value=0.0098  Score=49.10  Aligned_cols=26  Identities=23%  Similarity=0.318  Sum_probs=21.4

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      .....|+|+|++|||||||+..+.+.
T Consensus        15 ~~~~ki~v~G~~~~GKSsl~~~l~~~   40 (199)
T 4bas_A           15 KTKLQVVMCGLDNSGKTTIINQVKPA   40 (199)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcC
Confidence            33457999999999999999999653

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=95.02  E-value=0.012  Score=48.30  Aligned_cols=23  Identities=35%  Similarity=0.603  Sum_probs=20.7

Q ss_pred             eEEEEECCCchhHHHHHHHHHhh
Q psy8556          38 TKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      .-|+|+|++|+|||||+..|.+.
T Consensus        16 ~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           16 LKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            46899999999999999999764

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=95.01  E-value=0.01  Score=54.88  Aligned_cols=22  Identities=41%  Similarity=0.520  Sum_probs=20.6

Q ss_pred             eEEEEECCCchhHHHHHHHHHh
Q psy8556          38 TKVAILGPTASGKSSVALKISE   59 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~   59 (298)
                      +.|+|+|++|||||||++.|.+
T Consensus        35 p~I~vvG~~~sGKSSLln~l~g   56 (360)
T 3t34_A           35 PAIAVVGGQSSGKSSVLESIVG   56 (360)
T ss_dssp             CEEEEECBTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCcHHHHHHHHhC
Confidence            3799999999999999999998

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=95.00  E-value=0.01  Score=48.64  Aligned_cols=26  Identities=27%  Similarity=0.415  Sum_probs=21.4

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      .+..-|+|+|++|+|||||+..+.+.
T Consensus        19 ~~~~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           19 SQEHKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcC
Confidence            44567999999999999999999864

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=94.98  E-value=0.011  Score=49.50  Aligned_cols=23  Identities=30%  Similarity=0.528  Sum_probs=20.5

Q ss_pred             eEEEEECCCchhHHHHHHHHHhh
Q psy8556          38 TKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      .-|+|+|++|+|||||+..|.+.
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y            9 FKLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999999764

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=94.98  E-value=0.012  Score=49.04  Aligned_cols=23  Identities=26%  Similarity=0.411  Sum_probs=20.5

Q ss_pred             eEEEEECCCchhHHHHHHHHHhh
Q psy8556          38 TKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      .-|+|+|++|+|||||++.+.+.
T Consensus         7 ~kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            7 YRVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            45899999999999999999864

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.96  E-value=0.01  Score=49.05  Aligned_cols=25  Identities=24%  Similarity=0.416  Sum_probs=21.7

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      .--|+|+|++|+|||||++.+.+..
T Consensus        23 ~~ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           23 MFKLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eeEEEEECCCCcCHHHHHHHHhcCC
Confidence            3468999999999999999998754

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=94.94  E-value=0.017  Score=52.06  Aligned_cols=25  Identities=28%  Similarity=0.272  Sum_probs=23.0

Q ss_pred             eEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          38 TKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      .+++|.||.|+|||||++.++...+
T Consensus        32 ~~v~i~G~~G~GKT~Ll~~~~~~~~   56 (350)
T 2qen_A           32 PLTLLLGIRRVGKSSLLRAFLNERP   56 (350)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CeEEEECCCcCCHHHHHHHHHHHcC
Confidence            5899999999999999999998875

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=94.93  E-value=0.013  Score=48.66  Aligned_cols=23  Identities=26%  Similarity=0.499  Sum_probs=20.4

Q ss_pred             eEEEEECCCchhHHHHHHHHHhh
Q psy8556          38 TKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      .-|+|+|++|||||||+..|.+.
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A            9 FKILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            45899999999999999999754

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=94.92  E-value=0.014  Score=59.51  Aligned_cols=23  Identities=22%  Similarity=0.469  Sum_probs=21.3

Q ss_pred             EEEEECCCchhHHHHHHHHHhhC
Q psy8556          39 KVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      -+.|+||+|+|||++++.||..+
T Consensus       203 ~vLL~G~pGtGKT~la~~la~~l  225 (758)
T 3pxi_A          203 NPVLIGEPGVGKTAIAEGLAQQI  225 (758)
T ss_dssp             EEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CeEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999999986

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=94.91  E-value=0.012  Score=54.79  Aligned_cols=26  Identities=31%  Similarity=0.459  Sum_probs=23.4

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      +++.++.|.||+|||||||+..++..
T Consensus        61 ~~G~ii~I~G~pGsGKTtLal~la~~   86 (356)
T 1u94_A           61 PMGRIVEIYGPESSGKTTLTLQVIAA   86 (356)
T ss_dssp             ETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            47889999999999999999998864

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=94.90  E-value=0.013  Score=48.37  Aligned_cols=24  Identities=29%  Similarity=0.443  Sum_probs=21.3

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhh
Q psy8556          37 KTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      .--|+|+|++|+|||||++.+.+.
T Consensus        23 ~~ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           23 ALKIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECcCCCCHHHHHHHHhcC
Confidence            356899999999999999999864

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=94.90  E-value=0.029  Score=52.91  Aligned_cols=65  Identities=25%  Similarity=0.271  Sum_probs=46.5

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccchHHHHHHH
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQFCED  114 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~~~f~~~  114 (298)
                      ..+.+|+|+||+|   +||.+.|....+....+            .|..|...|..+..+|++                 
T Consensus       230 ~~~r~iVlsGPsg---~tl~~~L~~~~p~~~~~------------~tr~pR~gE~dG~~Y~Fv-----------------  277 (391)
T 3tsz_A          230 GFLRPVTIFGPIA---DVAREKLAREEPDIYQI------------AKSEPRDAGTDQRSSGII-----------------  277 (391)
T ss_dssp             SSCCCEEEESTTH---HHHHHHHHHHCTTTEEE------------CCCCCCCSSSCCC--CCC-----------------
T ss_pred             CCCCEEEEECCCH---HHHHHHHHhhCcccccc------------ccCCCCCcccCCccCCcC-----------------
Confidence            4678899999998   89999998876522211            345677778888888865                 


Q ss_pred             HHHhhHHHhhcCCceEE
Q psy8556         115 ALFSIKNILKKKKLPLL  131 (298)
Q Consensus       115 ~~~~i~~i~~~~~~~Il  131 (298)
                      ....+.++.+.|+.+|+
T Consensus       278 ~~~~V~~~~~~Gk~~iL  294 (391)
T 3tsz_A          278 RLHTIKQIIDQDKHALL  294 (391)
T ss_dssp             CHHHHHHHHTTTCEEEE
T ss_pred             cHHHHHHHHHcCCEEEE
Confidence            24466788889999888

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=94.87  E-value=0.014  Score=52.26  Aligned_cols=23  Identities=35%  Similarity=0.478  Sum_probs=20.8

Q ss_pred             eEEEEECCCchhHHHHHHHHHhh
Q psy8556          38 TKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      ..|+|+|++|||||||++.|.+.
T Consensus         4 ~kI~lvG~~nvGKSTL~n~L~g~   26 (272)
T 3b1v_A            4 TEIALIGNPNSGKTSLFNLITGH   26 (272)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHCC
Confidence            46899999999999999999864

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=94.87  E-value=0.01  Score=49.30  Aligned_cols=22  Identities=27%  Similarity=0.540  Sum_probs=19.6

Q ss_pred             eEEEEECCCchhHHHHHHHHHh
Q psy8556          38 TKVAILGPTASGKSSVALKISE   59 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~   59 (298)
                      .-|+|+|++|+|||||++.|.+
T Consensus        27 ~ki~vvG~~~~GKSsLi~~l~~   48 (192)
T 2il1_A           27 LQVIIIGSRGVGKTSLMERFTD   48 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHCC
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            3589999999999999999964

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=94.85  E-value=0.012  Score=49.65  Aligned_cols=23  Identities=17%  Similarity=0.430  Sum_probs=20.4

Q ss_pred             eEEEEECCCchhHHHHHHHHHhh
Q psy8556          38 TKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      .-|+|+|++|+|||||++.+.+.
T Consensus        27 ~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           27 FKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            46899999999999999999764

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=94.84  E-value=0.016  Score=47.92  Aligned_cols=24  Identities=33%  Similarity=0.535  Sum_probs=20.9

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhh
Q psy8556          37 KTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      .--|+|+|++|+|||||+..+.+.
T Consensus        21 ~~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           21 EVNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCcHHHHHHHHHhC
Confidence            346899999999999999999764

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=94.83  E-value=0.012  Score=54.33  Aligned_cols=26  Identities=23%  Similarity=0.376  Sum_probs=22.5

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      .++.++.|.||+|+|||+|+..++..
T Consensus       121 ~~gsviLI~GpPGsGKTtLAlqlA~~  146 (331)
T 2vhj_A          121 YASGMVIVTGKGNSGKTPLVHALGEA  146 (331)
T ss_dssp             EESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence            34567899999999999999999865

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=94.80  E-value=0.012  Score=49.23  Aligned_cols=23  Identities=30%  Similarity=0.397  Sum_probs=20.2

Q ss_pred             CeEEEEECCCchhHHHHHHHHHh
Q psy8556          37 KTKVAILGPTASGKSSVALKISE   59 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~   59 (298)
                      ..-|+|+|++|||||||++.+++
T Consensus        23 ~~ki~vvG~~~vGKSsLi~~l~~   45 (195)
T 3cbq_A           23 IFKVMLVGESGVGKSTLAGTFGG   45 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHTCC
T ss_pred             EEEEEEECCCCCCHHHHHHHHHh
Confidence            35689999999999999999864

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=94.79  E-value=0.021  Score=49.10  Aligned_cols=28  Identities=18%  Similarity=0.175  Sum_probs=24.7

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      .+..+|+|+|..||||+|++..+...++
T Consensus         9 ~~~~II~itGk~~SGKd~va~~l~~~~g   36 (202)
T 3ch4_B            9 APRLVLLFSGKRKSGKDFVTEALQSRLG   36 (202)
T ss_dssp             CCSEEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred             CCCEEEEEECCCCCChHHHHHHHHHHcC
Confidence            4567999999999999999999988664

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=94.78  E-value=0.0081  Score=62.71  Aligned_cols=22  Identities=41%  Similarity=0.520  Sum_probs=19.7

Q ss_pred             CCCeEEEEECCCchhHHHHHHH
Q psy8556          35 FRKTKVAILGPTASGKSSVALK   56 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~   56 (298)
                      ++.++++|+|+||||||+||-.
T Consensus        22 p~~~l~v~tG~SGSGKSsLafd   43 (916)
T 3pih_A           22 PKNRLVVITGVSGSGKSSLAMD   43 (916)
T ss_dssp             ETTSEEEEEESTTSSSHHHHTT
T ss_pred             CCCcEEEEECCCCCcHHHHHHH
Confidence            7788999999999999999743

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=94.76  E-value=0.019  Score=47.65  Aligned_cols=26  Identities=19%  Similarity=0.393  Sum_probs=22.1

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHh
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISE   59 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~   59 (298)
                      .++..-|+|+|++|||||||+..+..
T Consensus        26 ~~~~~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           26 GKKQMRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred             cCCccEEEEECCCCCCHHHHHHHHHh
Confidence            34566799999999999999999964

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=94.75  E-value=0.012  Score=49.29  Aligned_cols=23  Identities=26%  Similarity=0.423  Sum_probs=19.9

Q ss_pred             eEEEEECCCchhHHHHHHHHHhh
Q psy8556          38 TKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      .-|+|+|++|||||||++.+.+.
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           26 FKFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHC-
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            46899999999999999999743

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=94.73  E-value=0.03  Score=54.10  Aligned_cols=92  Identities=20%  Similarity=0.113  Sum_probs=48.7

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccchHHHHHHH
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQFCED  114 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~~~f~~~  114 (298)
                      ..+.+|+|+||+|+|   |.+.|....+....+           .+|. |...|..++.+|+                 .
T Consensus       222 ~~~r~iVlsGPsG~G---l~~~Ll~~~p~~f~s-----------~~TR-pR~gE~dG~~Y~F-----------------T  269 (468)
T 3shw_A          222 GFLRPVTIFGPIADV---AREKLAREEPDIYQI-----------AKSE-PRDAGTDQRSSGI-----------------I  269 (468)
T ss_dssp             SSCCCEEEESTTHHH---HHHHHHHHCTTTEEE-----------CCCB-C----------CB-----------------C
T ss_pred             CCCCEEEEECCCHHH---HHHHHHHhCCCceee-----------ecCC-CCCcccccccCCc-----------------c
Confidence            456789999999999   888887776522211           1255 7788888887775                 1


Q ss_pred             HHHhhHHHhhcCCceEEE---chhHHHHHHHHcc--CCCCCCCCHHHHH
Q psy8556         115 ALFSIKNILKKKKLPLLV---GGTMLYFKALRDG--INKLPPANLKLRT  158 (298)
Q Consensus       115 ~~~~i~~i~~~~~~~Ilv---GGt~~y~~~ll~~--~~~~p~~d~~lr~  158 (298)
                      ..+.++++.+.|+.+|+.   -|..-.-.+.+..  ++..||+-.+|++
T Consensus       270 s~~~V~~vl~~Gk~~iLdId~qg~~~l~~~~~~p~~IFI~PPS~e~L~~  318 (468)
T 3shw_A          270 RLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKT  318 (468)
T ss_dssp             CHHHHHHHHTTTCEEEECCCHHHHHHHHHTTCCCEEEEEECSCHHHHHH
T ss_pred             cHHHHHHHHHCCCeEEEEeCHHHHHHHHhcCCCCEEEEEeCcCHHHHHH
Confidence            334566788899999883   2222211122222  2233777666654

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=94.72  E-value=0.011  Score=55.17  Aligned_cols=22  Identities=18%  Similarity=0.289  Sum_probs=19.4

Q ss_pred             EEEEECCCchhHHHHHHHHHhh
Q psy8556          39 KVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      -|+|+|++|+|||||++.|.+.
T Consensus        39 ~I~vvG~~g~GKSTLln~L~~~   60 (361)
T 2qag_A           39 TLMVVGESGLGKSTLINSLFLT   60 (361)
T ss_dssp             CEEECCCTTSCHHHHHHHHTTC
T ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Confidence            4799999999999999998653

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=94.71  E-value=0.016  Score=49.37  Aligned_cols=23  Identities=22%  Similarity=0.481  Sum_probs=20.6

Q ss_pred             eEEEEECCCchhHHHHHHHHHhh
Q psy8556          38 TKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      .-|+|+|++|+|||||+..|.+.
T Consensus        14 ~ki~v~G~~~vGKSsli~~l~~~   36 (223)
T 3cpj_B           14 FKIVLIGDSGVGKSNLLSRFTKN   36 (223)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            45899999999999999999864

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=94.71  E-value=0.014  Score=51.69  Aligned_cols=22  Identities=14%  Similarity=0.344  Sum_probs=20.2

Q ss_pred             EEEEECCCchhHHHHHHHHHhh
Q psy8556          39 KVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      .|+|+|++|||||||++.|.+.
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~   24 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNA   24 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            5899999999999999999865

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=94.70  E-value=0.011  Score=48.85  Aligned_cols=25  Identities=28%  Similarity=0.422  Sum_probs=21.1

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      +..-|+|+|++|||||||++.+.+.
T Consensus        20 ~~~ki~v~G~~~~GKSsli~~l~~~   44 (190)
T 2h57_A           20 KEVHVLCLGLDNSGKTTIINKLKPS   44 (190)
T ss_dssp             -CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcC
Confidence            3456899999999999999999754

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=94.68  E-value=0.018  Score=57.96  Aligned_cols=28  Identities=21%  Similarity=0.224  Sum_probs=24.7

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      +++..++|+|++|+|||||+..|++..+
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~   34 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKTG   34 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhcC
Confidence            4578899999999999999999997654

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=94.68  E-value=0.0099  Score=62.18  Aligned_cols=22  Identities=41%  Similarity=0.489  Sum_probs=19.7

Q ss_pred             CCCeEEEEECCCchhHHHHHHH
Q psy8556          35 FRKTKVAILGPTASGKSSVALK   56 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~   56 (298)
                      ++.++++|+|+||||||||+-.
T Consensus        42 P~~~lvv~tG~SGSGKSSLafd   63 (972)
T 2r6f_A           42 PRGKLVVLTGLSGSGKSSLAFD   63 (972)
T ss_dssp             ETTSEEEEEESTTSSHHHHHTT
T ss_pred             cCCcEEEEECCCCCCHHHHHHH
Confidence            7789999999999999999753

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=93.70  E-value=0.0056  Score=51.25  Aligned_cols=24  Identities=21%  Similarity=0.425  Sum_probs=20.3

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHh
Q psy8556          36 RKTKVAILGPTASGKSSVALKISE   59 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~   59 (298)
                      +..-|+|+|++|+|||||+..+..
T Consensus        29 ~~~ki~v~G~~~~GKSsli~~l~~   52 (204)
T 3th5_A           29 QAIKCVVVGDGAVGKTCLLISYTT   52 (204)
Confidence            345689999999999999988864

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=94.67  E-value=0.0093  Score=48.63  Aligned_cols=23  Identities=30%  Similarity=0.528  Sum_probs=9.8

Q ss_pred             eEEEEECCCchhHHHHHHHHHhh
Q psy8556          38 TKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      .-|+|+|++|||||||+..+.+.
T Consensus         9 ~ki~v~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C            9 FKLLLIGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             EEEEEECCCCC------------
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            45899999999999999998753

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=94.67  E-value=0.017  Score=55.25  Aligned_cols=27  Identities=26%  Similarity=0.203  Sum_probs=24.1

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      .+|.++.|+|++|+|||||+..+|...
T Consensus       198 ~~G~l~ii~G~pg~GKT~lal~ia~~~  224 (444)
T 2q6t_A          198 GPGSLNIIAARPAMGKTAFALTIAQNA  224 (444)
T ss_dssp             CTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            578999999999999999999998653

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=94.67  E-value=0.014  Score=51.59  Aligned_cols=24  Identities=29%  Similarity=0.317  Sum_probs=21.1

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhh
Q psy8556          37 KTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      ...|+|+|++|||||||++.|.+.
T Consensus         5 ~~kI~lvG~~nvGKTsL~n~l~g~   28 (258)
T 3a1s_A            5 MVKVALAGCPNVGKTSLFNALTGT   28 (258)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCC
Confidence            346899999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	298
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.19
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.13
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.12
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.07
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.05
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.03
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.01
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	98.99
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	98.96
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	98.95
d1g2912	240	Maltose transport protein MalK, N-terminal domain	98.93
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	98.87
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	98.83
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	98.77
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	98.68
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	98.66
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	98.65
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	98.64
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	98.59
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	98.58
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	98.58
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	98.51
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	98.48
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	98.48
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	98.48
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	98.43
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	98.42
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	98.39
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	98.31
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.28
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	98.26
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	98.23
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	98.23
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	98.19
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	98.19
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	98.16
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	98.12
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.1
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	98.1
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	98.07
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	98.04
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	98.03
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	98.02
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	98.02
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	98.0
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.98
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.96
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.94
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.93
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.93
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.93
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.92
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.88
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.81
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.79
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.79
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.79
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.78
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.75
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.72
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.71
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.7
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	97.67
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.66
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.64
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.63
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.62
d1okkd2	207	GTPase domain of the signal recognition particle r	97.61
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.6
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	97.6
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.6
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.58
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	97.54
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.53
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.51
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.47
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.45
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.43
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	97.41
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.37
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.31
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	97.27
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.23
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	97.22
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.22
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.18
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.15
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.07
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.07
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	97.07
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	97.06
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.05
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	97.0
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.97
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.88
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.87
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	96.86
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.83
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.82
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.81
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	96.79
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.77
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	96.76
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.72
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.7
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	96.68
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.66
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.66
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.6
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.59
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	96.49
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.49
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.44
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	96.43
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.39
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	96.38
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	96.36
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	96.35
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.35
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	96.34
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.31
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.31
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.29
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	96.29
d1nrjb_	209	Signal recognition particle receptor beta-subunit	96.29
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.29
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.28
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.25
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.25
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.23
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	96.2
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.2
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.17
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.16
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.16
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	96.14
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	96.11
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	96.07
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.04
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	96.03
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.01
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	95.99
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	95.99
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	95.94
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.93
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	95.92
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	95.9
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	95.89
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	95.86
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.85
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	95.75
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	95.64
d2fh5b1	207	Signal recognition particle receptor beta-subunit	95.63
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	95.63
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	95.58
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	95.55
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.5
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.48
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	95.48
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	95.38
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	95.35
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	95.34
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	95.33
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	95.26
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.2
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	95.2
d1tuea_	205	Replication protein E1 helicase domain {Human papi	95.19
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	95.19
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	95.18
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	95.14
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	95.13
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	95.09
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.08
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.04
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	95.02
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.02
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	94.96
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	94.93
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	94.9
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	94.88
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	94.88
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	94.87
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	94.85
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	94.85
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	94.8
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	94.79
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.77
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	94.71
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	94.71
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	94.68
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	94.68
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	94.67
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	94.66
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	94.64
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	94.57
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	94.57
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	94.56
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	94.49
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	94.45
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	94.44
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	94.42
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	94.37
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	94.33
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	94.32
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	94.27
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	94.26
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	94.23
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	94.22
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	94.19
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	94.16
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	94.11
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	94.04
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	94.04
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	94.03
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	94.01
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	93.96
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	93.9
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	93.77
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	93.76
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	93.68
d1kjwa2	199	Guanylate kinase-like domain of Psd-95 {Rat (Rattu	93.43
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	93.39
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	93.39
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	93.34
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	93.07
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	92.65
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	92.62
d1xpua3	289	Transcription termination factor Rho, ATPase domai	92.57
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	92.56
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	92.09
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	92.07
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	91.99
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	91.91
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	91.83
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	91.8
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	91.7
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	91.38
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	91.29
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	91.03
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	90.98
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	90.86
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	90.66
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	90.63
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	90.53
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	90.38
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	90.37
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	90.27
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	90.19
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	89.81
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	89.69
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	89.64
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	89.55
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	89.44
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	89.12
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	88.98
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	88.79
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	88.45
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	88.31
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	88.17
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	87.97
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	87.56
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	87.55
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	87.36
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	86.67
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	86.61
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	86.5
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	86.32
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	86.16
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	85.77
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	85.63
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	84.59
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	84.09
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	82.17
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	82.07
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	81.97
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	81.96
d1oywa2	206	RecQ helicase domain {Escherichia coli [TaxId: 562	81.47
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	80.7
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	80.7
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	80.56
d1gg4a4	214	UDP-murNac-tripeptide D-alanyl-D-alanine-adding en	80.27

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.19  E-value=1.2e-11  Score=107.70  Aligned_cols=144  Identities=17%  Similarity=0.164  Sum_probs=75.7

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHHH
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIER   89 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e~   89 (298)
                      .++.|++ ...++++++     .-++|++++|+||||||||||+++|++.+.     +++|+| +.|.++...++....+
T Consensus         6 v~k~yg~-~~~l~~isl-----~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~-----p~sG~I~i~g~~i~~~~~~~r~i   74 (232)
T d2awna2           6 VTKAWGE-VVVSKDINL-----DIHEGEFVVFVGPSGCGKSTLLRMIAGLET-----ITSGDLFIGEKRMNDTPPAERGV   74 (232)
T ss_dssp             EEEEETT-EEEEEEEEE-----EECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEESSSCCTTSCGGGTCE
T ss_pred             EEEEECC-EEEEeeeEE-----EEcCCCEEEEECCCCChHHHHHHHHhcCCC-----CCCCEEEECCEECCCCchhhcee
Confidence            5677853 345556665     225677999999999999999999999877     899999 6898887555544334


Q ss_pred             cccccc--cccccCcCccchHHHHHH-----HHHHhhHHHhh--------cCCceEEEchhH---HHHHHHHcc----CC
Q psy8556          90 EITPHH--LIDIIEPTKSYSVIQFCE-----DALFSIKNILK--------KKKLPLLVGGTM---LYFKALRDG----IN  147 (298)
Q Consensus        90 ~~v~~~--l~~~~~~~e~~s~~~f~~-----~~~~~i~~i~~--------~~~~~IlvGGt~---~y~~~ll~~----~~  147 (298)
                      ..+++.  ++..++..+++.......     ...+.+.++++        ...+--++||..   ...++++.+    +.
T Consensus        75 g~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illl  154 (232)
T d2awna2          75 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLL  154 (232)
T ss_dssp             EEECSSCCC---------------------CHHHHHHHHHHHHC---------------------CHHHHHHTCCSEEEE
T ss_pred             eeeccccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            445543  222233344433221111     11111222221        112235789877   577888876    44


Q ss_pred             CCCCC--CHHHHHHHHHHHH
Q psy8556         148 KLPPA--NLKLRTKFNIDIN  165 (298)
Q Consensus       148 ~~p~~--d~~lr~~l~~~~~  165 (298)
                      |.|.+  |+..+..+.+.+.
T Consensus       155 DEPts~LD~~~~~~i~~~l~  174 (232)
T d2awna2         155 DEPLSNLDAALRVQMRIEIS  174 (232)
T ss_dssp             ESTTTTSCHHHHHHHHHHHH
T ss_pred             cCCCCCCCHHHHHHHHHHHH
Confidence            66754  7877776655443

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.13  E-value=4e-11  Score=104.18  Aligned_cols=65  Identities=18%  Similarity=0.137  Sum_probs=50.2

Q ss_pred             hhcccCchhhhh---hccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCC
Q psy8556          10 RDTETDPQQRQL---TADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKP   84 (298)
Q Consensus        10 ~~~~~~~~~~~~---~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp   84 (298)
                      ..+++|+.+...   ++|+++     .-++|++++|+||||||||||+++|++...     +|+|+| +.|.++...++
T Consensus         6 nlsk~y~~~~~~~~al~~isl-----~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~-----p~sG~I~~~g~~i~~~~~   74 (230)
T d1l2ta_           6 NVTKTYKMGEEIIYALKNVNL-----NIKEGEFVSIMGPSGSGKSTMLNIIGCLDK-----PTEGEVYIDNIKTNDLDD   74 (230)
T ss_dssp             EEEEEEEETTEEEEEEEEEEE-----EECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECTTCCH
T ss_pred             eEEEEeCCCCeeEEEEeceEE-----EEcCCCEEEEECCCCCCcchhhHhccCCCC-----CCcceeEECCEEcCcCCh
Confidence            357889776643   444444     235677999999999999999999998876     899999 68888875443

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.12  E-value=4.3e-11  Score=103.91  Aligned_cols=139  Identities=14%  Similarity=0.089  Sum_probs=83.6

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHH
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIE   88 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e   88 (298)
                      ..++.|+.  +.++|+++     .-++|++++|+||||||||||+++|++.+.     +|+|+| +.|.++...++....
T Consensus         6 nlsk~y~~--~aL~~vs~-----~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~-----p~sG~I~~~G~~i~~~~~~~r~   73 (229)
T d3d31a2           6 SLSRKWKN--FSLDNLSL-----KVESGEYFVILGPTGAGKTLFLELIAGFHV-----PDSGRILLDGKDVTDLSPEKHD   73 (229)
T ss_dssp             EEEEECSS--CEEEEEEE-----EECTTCEEEEECCCTHHHHHHHHHHHTSSC-----CSEEEEEETTEECTTSCHHHHT
T ss_pred             EEEEEeCC--EEEeeeEE-----EECCCCEEEEECCCCCcHHHHHHHHhcCcC-----CCCCEEEEccEeccccchhHhc
Confidence            35778864  34666665     224577999999999999999999999887     899999 688888654444334


Q ss_pred             HcccccccccccCcCccchHHHHHHHH--------HHhhHHHhh--------cCCceEEEchhH---HHHHHHHcc----
Q psy8556          89 REITPHHLIDIIEPTKSYSVIQFCEDA--------LFSIKNILK--------KKKLPLLVGGTM---LYFKALRDG----  145 (298)
Q Consensus        89 ~~~v~~~l~~~~~~~e~~s~~~f~~~~--------~~~i~~i~~--------~~~~~IlvGGt~---~y~~~ll~~----  145 (298)
                      +..++++.    .....+++.+.....        .+.+.++.+        ...+--++||-.   ...++++.+    
T Consensus        74 ig~v~Q~~----~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iL  149 (229)
T d3d31a2          74 IAFVYQNY----SLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKIL  149 (229)
T ss_dssp             CEEECTTC----CCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEE
T ss_pred             ceeecccc----ccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCce
Confidence            44444432    222233333322211        011111111        112224678866   466888765    


Q ss_pred             CCCCCCC--CHHHHHHHHHHH
Q psy8556         146 INKLPPA--NLKLRTKFNIDI  164 (298)
Q Consensus       146 ~~~~p~~--d~~lr~~l~~~~  164 (298)
                      +.|.|.+  |+..+..+.+.+
T Consensus       150 llDEPts~LD~~~~~~i~~~l  170 (229)
T d3d31a2         150 LLDEPLSALDPRTQENAREML  170 (229)
T ss_dssp             EEESSSTTSCHHHHHHHHHHH
T ss_pred             eecCCCcCCCHHHHHHHHHHH
Confidence            3456654  777776665544

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=7.2e-11  Score=103.17  Aligned_cols=141  Identities=13%  Similarity=0.051  Sum_probs=83.8

Q ss_pred             hcccCchhhhh---hccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCH
Q psy8556          11 DTETDPQQRQL---TADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSI   86 (298)
Q Consensus        11 ~~~~~~~~~~~---~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~   86 (298)
                      .+++|+.+...   ++|+++     .-.+|++++|+||||||||||+++|++...     +++|+| +.|.++....+..
T Consensus         7 lsk~y~~~~~~~~al~~vsl-----~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~-----p~sG~I~~~g~~i~~~~~~~   76 (240)
T d3dhwc1           7 ITKVFHQGTRTIQALNNVSL-----HVPAGQIYGVIGASGAGKSTLIRCVNLLER-----PTEGSVLVDGQELTTLSESE   76 (240)
T ss_dssp             EEEEEECSSCEEEEEEEEEE-----EECSSCEEEEEESTTSSHHHHHHHHTTSSC-----CSEEEEEETTEEECTTCHHH
T ss_pred             EEEEeCCCCeeEEEeeceeE-----EEcCCCEEEEECCCCCCHHHHHHHHcCCcc-----ccCCceEEcCeEeeeCChhh
Confidence            57888776533   445444     225577899999999999999999998876     899999 7898887443321


Q ss_pred             -----HHHcccccccccccCcCccchHHHHH---------------HHHHHhhHHHh---hcCCce-EEEchhH---HHH
Q psy8556          87 -----IEREITPHHLIDIIEPTKSYSVIQFC---------------EDALFSIKNIL---KKKKLP-LLVGGTM---LYF  139 (298)
Q Consensus        87 -----~e~~~v~~~l~~~~~~~e~~s~~~f~---------------~~~~~~i~~i~---~~~~~~-IlvGGt~---~y~  139 (298)
                           .....+++..    .....+++.+..               +.+.+.++..-   ...+.| -++||-.   ...
T Consensus        77 ~~~~rr~ig~VfQ~~----~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiA  152 (240)
T d3dhwc1          77 LTKARRQIGMIFQHF----NLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIA  152 (240)
T ss_dssp             HHHHHHHEEECCSSC----CCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHH
T ss_pred             hhhhhcccccccccc----ccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHh
Confidence                 1233344432    112223332221               11222222110   112223 5788877   567


Q ss_pred             HHHHcc----CCCCCC--CCHHHHHHHHHHHH
Q psy8556         140 KALRDG----INKLPP--ANLKLRTKFNIDIN  165 (298)
Q Consensus       140 ~~ll~~----~~~~p~--~d~~lr~~l~~~~~  165 (298)
                      +++...    +.|.|.  .|+..+..+.+.+.
T Consensus       153 raL~~~P~lLllDEPt~~LD~~~~~~i~~~l~  184 (240)
T d3dhwc1         153 RALASNPKVLLCDEATSALDPATTRSILELLK  184 (240)
T ss_dssp             HHHHTCCSEEEEESGGGSSCHHHHHHHHHHHH
T ss_pred             hhhccCCCeEEeccccccCCHHHhhHHHHHHH
Confidence            888865    345664  47877777766554

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.05  E-value=1.6e-10  Score=100.84  Aligned_cols=145  Identities=14%  Similarity=0.140  Sum_probs=85.3

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHH
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIE   88 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e   88 (298)
                      ..++.|++ ...++++++     .-++|++++|+||||||||||+++|++.+.     +|+|+| +.|.++....+....
T Consensus        11 nlsk~yg~-~~al~~vsl-----~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~-----p~sG~I~i~g~~i~~~~~~~r~   79 (239)
T d1v43a3          11 NLTKRFGN-FTAVNKLNL-----TIKDGEFLVLLGPSGCGKTTTLRMIAGLEE-----PTEGRIYFGDRDVTYLPPKDRN   79 (239)
T ss_dssp             EEEEEETT-EEEEEEEEE-----EECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTTSCGGGGT
T ss_pred             EEEEEECC-EEEEcceeE-----EECCCCEEEEECCCCChHHHHHHHHHcCCC-----CCCCEEEEcceecccCCcccce
Confidence            45778853 334555555     225577899999999999999999999887     899999 689888765554444


Q ss_pred             Hccccccc--ccccCcCc---------cchHHHHHHHHHHhhHHH----hhcCCceEEEchhH---HHHHHHHcc----C
Q psy8556          89 REITPHHL--IDIIEPTK---------SYSVIQFCEDALFSIKNI----LKKKKLPLLVGGTM---LYFKALRDG----I  146 (298)
Q Consensus        89 ~~~v~~~l--~~~~~~~e---------~~s~~~f~~~~~~~i~~i----~~~~~~~IlvGGt~---~y~~~ll~~----~  146 (298)
                      +..++++.  +..++..+         .++..+..+.+.+.++..    .....+--++||..   ...+++..+    +
T Consensus        80 ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLl  159 (239)
T d1v43a3          80 ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLL  159 (239)
T ss_dssp             EEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEE
T ss_pred             EEEEeechhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCcee
Confidence            44454431  11111111         111112222222222211    01112234789977   567888865    4


Q ss_pred             CCCCCC--CHHHHHHHHHHHH
Q psy8556         147 NKLPPA--NLKLRTKFNIDIN  165 (298)
Q Consensus       147 ~~~p~~--d~~lr~~l~~~~~  165 (298)
                      .|.|.+  |+..++.+.+.+.
T Consensus       160 lDEPts~LD~~~~~~i~~ll~  180 (239)
T d1v43a3         160 MDEPLSNLDAKLRVAMRAEIK  180 (239)
T ss_dssp             EESTTTTSCHHHHHHHHHHHH
T ss_pred             ecCCcccCCHHHHHHHHHHHH
Confidence            466754  8888877766544

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.03  E-value=7.9e-11  Score=102.96  Aligned_cols=62  Identities=13%  Similarity=0.159  Sum_probs=49.1

Q ss_pred             hhcccCchhh-hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          10 RDTETDPQQR-QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        10 ~~~~~~~~~~-~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      ..+++|+.|. ..++|+++     .-++|++++|+||||||||||+++|++...     +|+|+| +.|.++..
T Consensus         8 nlsk~y~~g~~~aL~~vsl-----~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~-----p~~G~I~~~g~~i~~   71 (242)
T d1oxxk2           8 NVSKVFKKGKVVALDNVNI-----NIENGERFGILGPSGAGKTTFMRIIAGLDV-----PSTGELYFDDRLVAS   71 (242)
T ss_dssp             EEEEEEGGGTEEEEEEEEE-----EECTTCEEEEECSCHHHHHHHHHHHHTSSC-----CSEEEEEETTEEEEE
T ss_pred             eEEEEECCCCEEEEeceEE-----EECCCCEEEEECCCCCcHHHHHHHHHcCcC-----CCCceEEECCEEeec
Confidence            4688998775 44666665     224567899999999999999999998877     899999 68877754

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.01  E-value=2.7e-10  Score=99.56  Aligned_cols=65  Identities=12%  Similarity=0.137  Sum_probs=50.4

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCC
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPS   85 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~   85 (298)
                      ..++.|+ +...++++++     .-++|++++|+||||||||||+++|++.+.     +|+|+| +.|.++....+.
T Consensus        11 ~l~k~yg-~~~al~~vs~-----~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~-----p~~G~I~~~G~~i~~~~~~   76 (240)
T d1ji0a_          11 SLHVYYG-AIHAIKGIDL-----KVPRGQIVTLIGANGAGKTTTLSAIAGLVR-----AQKGKIIFNGQDITNKPAH   76 (240)
T ss_dssp             EEEEEET-TEEEEEEEEE-----EEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECTTCCHH
T ss_pred             eEEEEEC-CEEEEeeeeE-----EECCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCccEEEecccccccccHH
Confidence            3467775 4456677776     224567899999999999999999998877     999999 689988764433

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.99  E-value=5.8e-10  Score=97.22  Aligned_cols=120  Identities=21%  Similarity=0.229  Sum_probs=74.9

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHHHcccccccccccCcCccchHHHHHH--
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQFCE--  113 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~~~f~~--  113 (298)
                      +++++|+||||||||||+++|++.+.     +++|+| +.|.++....|....+..++++.    ...+.+++.+...  
T Consensus        24 ~e~~~liGpnGaGKSTll~~i~Gl~~-----p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~----~l~~~ltV~enl~~~   94 (240)
T d2onka1          24 RDYCVLLGPTGAGKSVFLELIAGIVK-----PDRGEVRLNGADITPLPPERRGIGFVPQDY----ALFPHLSVYRNIAYG   94 (240)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTTSCTTTSCCBCCCSSC----CCCTTSCHHHHHHTT
T ss_pred             CEEEEEECCCCChHHHHHHHHHcCCC-----CCceEEEECCEECCcCCHHHcCceeeccch----hhcccchhhHhhhhh
Confidence            36899999999999999999999887     899999 69999876555544445555431    1112233322211  


Q ss_pred             -------HHHHhhHHHhh--------cCCceEEEchhH---HHHHHHHcc----CCCCCCC--CHHHHHHHHHHHH
Q psy8556         114 -------DALFSIKNILK--------KKKLPLLVGGTM---LYFKALRDG----INKLPPA--NLKLRTKFNIDIN  165 (298)
Q Consensus       114 -------~~~~~i~~i~~--------~~~~~IlvGGt~---~y~~~ll~~----~~~~p~~--d~~lr~~l~~~~~  165 (298)
                             ...+.+.++.+        ...+--++||..   ...+|++.+    +.|.|.+  |+..+..+.+.+.
T Consensus        95 l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~  170 (240)
T d2onka1          95 LRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELR  170 (240)
T ss_dssp             CTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHH
T ss_pred             hcccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHH
Confidence                   11112222221        122335788877   577888876    3456754  8887777766543

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.96  E-value=4.5e-10  Score=98.87  Aligned_cols=65  Identities=20%  Similarity=0.260  Sum_probs=50.0

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCH
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSI   86 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~   86 (298)
                      .++.|++ ...++++++     .-++|++++|+||||||||||+++|++.+.     +|+|+| +.|.++....|..
T Consensus        10 lsk~yg~-~~aL~~vs~-----~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~-----p~~G~I~~~g~~i~~~~~~~   75 (254)
T d1g6ha_          10 IVKYFGE-FKALDGVSI-----SVNKGDVTLIIGPNGSGKSTLINVITGFLK-----ADEGRVYFENKDITNKEPAE   75 (254)
T ss_dssp             EEEEETT-EEEEEEECC-----EEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECTTCCHHH
T ss_pred             EEEEECC-eEEEcceEE-----EECCCCEEEEECCCCCcHHHHHHHHHCCCc-----CCCcEEEECCEeccchhHHH
Confidence            4667753 445566655     225577999999999999999999998877     999999 6999987655543

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=98.95  E-value=9.8e-10  Score=95.77  Aligned_cols=60  Identities=15%  Similarity=0.191  Sum_probs=47.1

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      .++.|+ +...++++++     .-++|++++|+||||||||||+++|++.+.     +++|+| +.|.++..
T Consensus         8 l~k~yg-~~~vl~~vs~-----~v~~Gei~glvG~nGaGKSTLl~~l~G~~~-----p~~G~i~i~G~~i~~   68 (238)
T d1vpla_           8 LRKRIG-KKEILKGISF-----EIEEGEIFGLIGPNGAGKTTTLRIISTLIK-----PSSGIVTVFGKNVVE   68 (238)
T ss_dssp             EEEEET-TEEEEEEEEE-----EECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEETTT
T ss_pred             EEEEEC-CEEEEcccee-----EEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCCEEEECcEeccc
Confidence            356664 3556777776     124466899999999999999999998877     899999 68888764

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=98.93  E-value=5.6e-10  Score=97.39  Aligned_cols=141  Identities=12%  Similarity=0.083  Sum_probs=81.9

Q ss_pred             hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCC---
Q psy8556          10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPS---   85 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~---   85 (298)
                      ..+++|++ ...++++++     .-++|++++|+||||||||||+++|++.+.     +|+|+| +.|.++...++.   
T Consensus         8 nl~k~yg~-~~al~~vsl-----~i~~Ge~~~liG~sGaGKSTll~~i~gl~~-----p~sG~I~~~g~~i~~~~~~~~~   76 (240)
T d1g2912           8 DVWKVFGE-VTAVREMSL-----EVKDGEFMILLGPSGCGKTTTLRMIAGLEE-----PSRGQIYIGDKLVADPEKGIFV   76 (240)
T ss_dssp             EEEEEETT-EEEEEEEEE-----EEETTCEEEEECSTTSSHHHHHHHHHTSSC-----CSEEEEEETTEEEEEGGGTEEC
T ss_pred             eEEEEECC-EEEEcceee-----EEcCCCEEEEECCCCChHHHHHHHHhcCCC-----CCCCEEEECCEEecccchhhhc
Confidence            35778854 334566665     124567899999999999999999998876     899999 688776532211   


Q ss_pred             ---HHHHcccccccccccCcCccchHHHHHH---------------HHHHhhHHH---hhcCCce-EEEchhH---HHHH
Q psy8556          86 ---IIEREITPHHLIDIIEPTKSYSVIQFCE---------------DALFSIKNI---LKKKKLP-LLVGGTM---LYFK  140 (298)
Q Consensus        86 ---~~e~~~v~~~l~~~~~~~e~~s~~~f~~---------------~~~~~i~~i---~~~~~~~-IlvGGt~---~y~~  140 (298)
                         ......++++.    ...+.+++.+...               .+.+.++..   ....+.| =++||..   ...+
T Consensus        77 ~~~~r~ig~v~Q~~----~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAr  152 (240)
T d1g2912          77 PPKDRDIAMVFQSY----ALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGR  152 (240)
T ss_dssp             CGGGSSEEEECSCC----CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred             ccccccceecccch----hhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHH
Confidence               11223333331    1122233332221               112222111   0112222 4789877   5778


Q ss_pred             HHHcc----CCCCCCC--CHHHHHHHHHHHH
Q psy8556         141 ALRDG----INKLPPA--NLKLRTKFNIDIN  165 (298)
Q Consensus       141 ~ll~~----~~~~p~~--d~~lr~~l~~~~~  165 (298)
                      +++.+    +.|.|.+  |+..+..+.+.+.
T Consensus       153 aL~~~P~iLllDEPt~~LD~~~~~~i~~~l~  183 (240)
T d1g2912         153 AIVRKPQVFLMDEPLSNLDAKLRVRMRAELK  183 (240)
T ss_dssp             HHHTCCSEEEEECTTTTSCHHHHHHHHHHHH
T ss_pred             HHhcCCCEEEecCCCcccCHHHHHHHHHHHH
Confidence            88876    4466754  7877777766543

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.87  E-value=1.5e-09  Score=95.70  Aligned_cols=61  Identities=13%  Similarity=0.053  Sum_probs=47.3

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTN   82 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~   82 (298)
                      .++.|++ ...+.++++     .-.+|++++|+||||||||||+++|++.+.     +|+|+| +.|.++...
T Consensus         8 l~k~yg~-~~al~~vs~-----~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~-----p~~G~I~~~G~~i~~~   69 (258)
T d1b0ua_           8 LHKRYGG-HEVLKGVSL-----QARAGDVISIIGSSGSGKSTFLRCINFLEK-----PSEGAIIVNGQNINLV   69 (258)
T ss_dssp             EEEEETT-EEEEEEEEE-----EECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECCEE
T ss_pred             EEEEECC-EEEEcceee-----EEcCCCEEEEECCCCCcHHHHHHHHHcCcc-----CCCCCEEECCEEeccC
Confidence            4677754 345566665     224577999999999999999999998877     899999 688887643

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=98.83  E-value=8.4e-10  Score=96.43  Aligned_cols=63  Identities=14%  Similarity=0.138  Sum_probs=50.8

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNK   83 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~k   83 (298)
                      ++-.|+++...++|+++     .-++|++++|+||||||||||++.|++.+.     +++|+| +.|.++....
T Consensus         7 vsf~Y~~~~~vL~~isl-----~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~-----p~~G~I~i~g~~i~~~~   70 (242)
T d1mv5a_           7 VDFAYDDSEQILRDISF-----EAQPNSIIAFAGPSGGGKSTIFSLLERFYQ-----PTAGEITIDGQPIDNIS   70 (242)
T ss_dssp             EEECSSSSSCSEEEEEE-----EECTTEEEEEECCTTSSHHHHHHHHTTSSC-----CSBSCEEETTEESTTTS
T ss_pred             EEEECCCCCceeeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHHHhhC-----CCCCEEEECCEEecccc
Confidence            45678887777788776     224567899999999999999999998887     899999 6888876533

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.77  E-value=1.1e-09  Score=93.23  Aligned_cols=89  Identities=17%  Similarity=0.094  Sum_probs=59.9

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccchHHH------
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQ------  110 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~~~------  110 (298)
                      |.+|+|+||||||||||.+.|....+.     ..  +....+.+|..|.+.|..++.+|+++...+......+.      
T Consensus         2 G~livi~GPSG~GK~tl~~~L~~~~p~-----~~--~~~~is~TTR~~R~~E~~G~dY~Fvs~~~F~~~i~~g~flE~~~   74 (205)
T d1s96a_           2 GTLYIVSAPSGAGKSSLIQALLKTQPL-----YD--TQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAE   74 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSCT-----TT--EEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCCc-----cC--ceEEEEEeccCCCccccccccceeecHHHHHHHhhhhhheeEEE
Confidence            678999999999999999999988651     11  22234567888999999999998876543322111111      


Q ss_pred             ----HHHHHHHhhHHHhhcCCceEEE
Q psy8556         111 ----FCEDALFSIKNILKKKKLPLLV  132 (298)
Q Consensus       111 ----f~~~~~~~i~~i~~~~~~~Ilv  132 (298)
                          ++......+...+..|+.+|+.
T Consensus        75 ~~g~~YGt~~~~v~~~~~~g~~~ild  100 (205)
T d1s96a_          75 VFGNYYGTSREAIEQVLATGVDVFLD  100 (205)
T ss_dssp             ETTEEEEEEHHHHHHHHTTTCEEEEE
T ss_pred             ECCceeccccchHHHHHhcCCceeec
Confidence                1112234566677888888774

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=3.2e-09  Score=93.17  Aligned_cols=64  Identities=17%  Similarity=0.168  Sum_probs=49.6

Q ss_pred             hhcccCchhh--hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCC
Q psy8556          10 RDTETDPQQR--QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNK   83 (298)
Q Consensus        10 ~~~~~~~~~~--~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~k   83 (298)
                      .++-.||.+.  ..++|+++     .-++|++++|+||||||||||++.|++.+.     +++|+| +.|.++....
T Consensus        16 nvsf~Y~~~~~~~vL~~isl-----~i~~Ge~vaivG~sGsGKSTLl~li~gl~~-----p~~G~I~i~g~~i~~~~   82 (251)
T d1jj7a_          16 DVSFAYPNRPDVLVLQGLTF-----TLRPGEVTALVGPNGSGKSTVAALLQNLYQ-----PTGGQLLLDGKPLPQYE   82 (251)
T ss_dssp             EEEECCTTSTTCCSEEEEEE-----EECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEEGGGBC
T ss_pred             EEEEECCCCCCCEeEeceEE-----EEcCCCEEEEECCCCCcHHHHHHHHhcccC-----CCcCEEEECCEecchhh
Confidence            3566788654  45677666     225567899999999999999999998887     899999 6888876433

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.66  E-value=8.7e-09  Score=87.25  Aligned_cols=58  Identities=17%  Similarity=0.221  Sum_probs=44.6

Q ss_pred             hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556          11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG   80 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~   80 (298)
                      .+.+|.  ...+.++++     .-++|++++|+||||||||||+++|++.+.     +++|+| +.|.++.
T Consensus         8 ls~~y~--~~vl~~is~-----~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~-----p~~G~I~~~g~~i~   66 (200)
T d1sgwa_           8 LSVGYD--KPVLERITM-----TIEKGNVVNFHGPNGIGKTTLLKTISTYLK-----PLKGEIIYNGVPIT   66 (200)
T ss_dssp             EEEESS--SEEEEEEEE-----EEETTCCEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEEGG
T ss_pred             EEEEeC--CeEEeceEE-----EEcCCCEEEEECCCCChHHHHHHHHhcccc-----cCCCEEEECCEehh
Confidence            355673  345666666     224466899999999999999999998877     899999 7887764

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=98.65  E-value=4.1e-09  Score=91.89  Aligned_cols=63  Identities=14%  Similarity=0.153  Sum_probs=49.3

Q ss_pred             hcccCchhh-hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCC
Q psy8556          11 DTETDPQQR-QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNK   83 (298)
Q Consensus        11 ~~~~~~~~~-~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~k   83 (298)
                      ++-.||.+. ..++|+++     .-++|++++|+||||||||||++.|++.+.     +++|.| +.|.++....
T Consensus         7 vsf~Y~~~~~~vL~~isl-----~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~-----p~~G~I~i~g~~i~~~~   71 (241)
T d2pmka1           7 IRFRYKPDSPVILDNINL-----SIKQGEVIGIVGRSGSGKSTLTKLIQRFYI-----PENGQVLIDGHDLALAD   71 (241)
T ss_dssp             EEEESSTTSCEEEEEEEE-----EEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEETTTSC
T ss_pred             EEEEeCCCCcceEeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHHhcCC-----CCCCEEEECCEEecccc
Confidence            566786544 56777777     224456899999999999999999999887     889999 6888886443

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.64  E-value=4.8e-09  Score=92.09  Aligned_cols=62  Identities=24%  Similarity=0.296  Sum_probs=48.9

Q ss_pred             hhcccCchhh-hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          10 RDTETDPQQR-QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        10 ~~~~~~~~~~-~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      .++-.||.+. ..++++++     .-++|++++|+||||||||||++.|++.+.     +++|.| +.|.++..
T Consensus        18 nvsf~Y~~~~~~~L~~isl-----~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~-----p~~G~I~i~g~~i~~   81 (253)
T d3b60a1          18 NVTFTYPGREVPALRNINL-----KIPAGKTVALVGRSGSGKSTIASLITRFYD-----IDEGHILMDGHDLRE   81 (253)
T ss_dssp             EEEECSSSSSCCSEEEEEE-----EECTTCEEEEEECTTSSHHHHHHHHTTTTC-----CSEEEEEETTEETTT
T ss_pred             EEEEEeCCCCCceeeceEE-----EEcCCCEEEEECCCCChHHHHHHHHhcccC-----CCccEEEECCcccch
Confidence            3566787765 56777776     123456899999999999999999999887     889999 68888764

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=3.2e-08  Score=83.29  Aligned_cols=26  Identities=42%  Similarity=0.485  Sum_probs=24.4

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      |-+|+|.||+||||||+++.|+..++
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~~l~   27 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQLLG   27 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            77999999999999999999999886

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=98.58  E-value=7.7e-08  Score=83.06  Aligned_cols=52  Identities=10%  Similarity=0.204  Sum_probs=39.4

Q ss_pred             hhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCC
Q psy8556          21 LTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNK   83 (298)
Q Consensus        21 ~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~k   83 (298)
                      .++|+++     .-++|++++|+||||||||||++.|++..      +++|+| +.|.++....
T Consensus        14 ~l~~isl-----~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~------~~~G~I~~~g~~i~~~~   66 (231)
T d1l7vc_          14 RLGPLSG-----EVRAGEILHLVGPNGAGKSTLLARMAGMT------SGKGSIQFAGQPLEAWS   66 (231)
T ss_dssp             TSCSEEE-----EEETTCEEECBCCTTSSHHHHHHHHHTSC------CCSSEEEESSSBGGGSC
T ss_pred             eecCEEE-----EEcCCCEEEEECCCCCcHHHHHHHHhCCC------CCceEEEECCEECCcCC
Confidence            4556555     11456789999999999999999999843      478898 7888776444

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.58  E-value=2.2e-08  Score=82.59  Aligned_cols=54  Identities=31%  Similarity=0.357  Sum_probs=42.1

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccc
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDI   99 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~   99 (298)
                      |++|+|+||||||||||++.|.+.++.         ++.....+|..|.+.|..+..+|+++.
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~~---------~~~~~~~tTR~~r~~e~~G~dy~fvs~   55 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIPN---------LHFSVSATTRAPRPGEVDGVDYHFIDP   55 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHSTT---------CEECCCEESSCCCTTCCBTTTBEECCH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCCC---------CeEEEEeeccCCCccccCCcceeeccc
Confidence            789999999999999999999988752         222345577788888888887776553

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.51  E-value=7.1e-09  Score=91.06  Aligned_cols=62  Identities=16%  Similarity=0.201  Sum_probs=48.7

Q ss_pred             hhcccCchhh-hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556          10 RDTETDPQQR-QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT   81 (298)
Q Consensus        10 ~~~~~~~~~~-~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t   81 (298)
                      .++-.||.+. ..++|+++     .-++|++++|+||||||||||++.|++.+.     +++|.| +.|.++..
T Consensus        21 nvsf~Y~~~~~~vL~~isl-----~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~-----p~~G~I~i~g~~i~~   84 (255)
T d2hyda1          21 HVSFQYNDNEAPILKDINL-----SIEKGETVAFVGMSGGGKSTLINLIPRFYD-----VTSGQILIDGHNIKD   84 (255)
T ss_dssp             EEEECSCSSSCCSEEEEEE-----EECTTCEEEEECSTTSSHHHHHTTTTTSSC-----CSEEEEEETTEEGGG
T ss_pred             EEEEEeCCCCCcceeceEE-----EEcCCCEEEEECCCCCcHHHHHHHHHhcCC-----ccccccccCCEEccc
Confidence            3566787664 56777766     224566899999999999999999998887     889999 68887754

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.48  E-value=3.1e-08  Score=82.19  Aligned_cols=52  Identities=21%  Similarity=0.285  Sum_probs=40.3

Q ss_pred             EEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccc
Q psy8556          40 VAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDI   99 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~   99 (298)
                      |+|+||||||||||++.|++.++..        +......+|..|.+.|..+..+++++.
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~~~~--------~~~~~~~TTR~~r~~E~~g~dy~fvs~   55 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEYPDS--------FGFSVSSTTRTPRAGEVNGKDYNFVSV   55 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTTT--------EEECCEEECSCCCTTCCBTTTEEECCH
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCcc--------eeEEEeeccCCCCCCCcCCccceeccH
Confidence            7899999999999999999887622        333445677777788888888877654

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=7.3e-09  Score=85.95  Aligned_cols=87  Identities=14%  Similarity=0.152  Sum_probs=54.4

Q ss_pred             eEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccchHHHH------
Q psy8556          38 TKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQF------  111 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~~~f------  111 (298)
                      ++|+|+||||||||||++.|.+..+..        +......+|..|.+.|..+..||+++.-.+......+.|      
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~~~~--------~~~~v~~TTR~~R~~E~~G~dY~Fvs~~~F~~~~~~g~fie~~~~   75 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKHPDR--------FAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSH   75 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHCTTT--------EECCCCEECSCC---CCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhCCcC--------eeeccccccCCCCCccccCccceeeehhhhhhheecCceEEEeee
Confidence            579999999999999999999877522        223345678888899999999987764322211111111      


Q ss_pred             ----HHHHHHhhHHHhhcCCceEEE
Q psy8556         112 ----CEDALFSIKNILKKKKLPLLV  132 (298)
Q Consensus       112 ----~~~~~~~i~~i~~~~~~~Ilv  132 (298)
                          +......+......|+.+|+.
T Consensus        76 ~g~~YGt~~~~i~~~~~~g~~~ild  100 (178)
T d1kgda_          76 EDAMYGTKLETIRKIHEQGLIAILD  100 (178)
T ss_dssp             TTEEEEEEHHHHHHHHHTTCEEEEE
T ss_pred             cccceeeeeecccchhccCceEEec
Confidence                111124555677788888764

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.48  E-value=3.8e-08  Score=82.04  Aligned_cols=52  Identities=19%  Similarity=0.198  Sum_probs=38.5

Q ss_pred             EEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccc
Q psy8556          40 VAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDI   99 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~   99 (298)
                      |+|+||||||||||++.|++.++..+        ......+|..|...|..+..+++++.
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~~~~--------~~~~~~TTR~~r~~E~~g~dy~fvs~   54 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHSSIF--------GFSVSHTTRNPRPGEEDGKDYYFVTR   54 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTTTE--------EECCCEECSCCCTTCCBTTTBEECCH
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCce--------eEEEEEeccCCCCCCccCceeEEeeh
Confidence            78999999999999999998876322        12334566777777878877776543

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=98.43  E-value=9.4e-10  Score=98.28  Aligned_cols=37  Identities=16%  Similarity=0.257  Sum_probs=28.5

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCC-----CeEeecCCc
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIP-----CEIISIDSA   71 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~-----~~iis~Ds~   71 (298)
                      +|.++|+|+|+|||||||+++.|...++     ..+|+.|+.
T Consensus         2 ~k~pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsf   43 (288)
T d1a7ja_           2 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF   43 (288)
T ss_dssp             TTSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCC
Confidence            5677999999999999999999988763     458999984

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.42  E-value=7.5e-08  Score=77.37  Aligned_cols=38  Identities=21%  Similarity=0.281  Sum_probs=33.4

Q ss_pred             ccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          33 LLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        33 ~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      ++..+++++|+||+||||||+++.|++.++...++.|.
T Consensus         2 ~~~~~~iivl~G~~GsGKsT~a~~La~~l~~~~~~~d~   39 (171)
T d1knqa_           2 TNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDF   39 (171)
T ss_dssp             CCTTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGG
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeechhh
Confidence            45678999999999999999999999999877776664

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.39  E-value=4.1e-07  Score=72.94  Aligned_cols=36  Identities=19%  Similarity=0.263  Sum_probs=31.2

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      ..|++|+|+||+||||||+++.|++.++..+++.|.
T Consensus         2 ~~g~iI~l~G~~GsGKSTia~~La~~lg~~~~~~~~   37 (176)
T d1zp6a1           2 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHS   37 (176)
T ss_dssp             CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEecH
Confidence            358899999999999999999999999877766553

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.31  E-value=1.2e-07  Score=84.16  Aligned_cols=35  Identities=26%  Similarity=0.335  Sum_probs=31.2

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY   74 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy   74 (298)
                      ++|++++|+||||||||||++.|++.+.     +++|.|.
T Consensus        60 ~~Ge~vaivG~nGsGKSTLl~~i~Gl~~-----p~~G~I~   94 (281)
T d1r0wa_          60 EKGEMLAITGSTGSGKTSLLMLILGELE-----ASEGIIK   94 (281)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHTSSC-----CSEEEEE
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhCCCc-----CCCcEEE
Confidence            6678999999999999999999999887     7777773

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.28  E-value=2.8e-07  Score=74.03  Aligned_cols=37  Identities=27%  Similarity=0.208  Sum_probs=31.9

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV   73 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv   73 (298)
                      .+.|+|+||+|||||||++.||+.++...++.+...+
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~~~~~i~~~~~~~   43 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREF   43 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCCeEeeehHHH
Confidence            4679999999999999999999999988887665433

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=98.26  E-value=1.8e-08  Score=90.81  Aligned_cols=37  Identities=27%  Similarity=0.345  Sum_probs=31.6

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHhhCC-------CeEeecCC
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISEYIP-------CEIISIDS   70 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~-------~~iis~Ds   70 (298)
                      .+.|-+|+|.|++||||||+++.|+..+.       ..+|+.|.
T Consensus        77 ~k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~  120 (308)
T d1sq5a_          77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDG  120 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred             CCCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeee
Confidence            46688999999999999999999998763       45788897

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=98.23  E-value=2.5e-07  Score=72.70  Aligned_cols=32  Identities=22%  Similarity=0.524  Sum_probs=27.9

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          39 KVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      .|+|+||+||||||+++.||+.++.++++.+.
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L~~~~id~~~   35 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ   35 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTTCEEEEHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCeEeech
Confidence            58888999999999999999999988775553

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.23  E-value=2.4e-07  Score=76.53  Aligned_cols=36  Identities=22%  Similarity=0.201  Sum_probs=31.7

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISEYIPCEIISID   69 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~D   69 (298)
                      ..+|.+|+|+||+||||||+++.||+.++...++.+
T Consensus         3 ~~kp~iI~i~G~pGSGKsT~a~~La~~~g~~~i~~g   38 (194)
T d1qf9a_           3 KSKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAG   38 (194)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHCCceEchh
Confidence            467889999999999999999999999987777654

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=98.19  E-value=4.7e-07  Score=72.36  Aligned_cols=33  Identities=15%  Similarity=0.326  Sum_probs=28.5

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIPCEIISID   69 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~D   69 (298)
                      .++|+|.||+||||||+++.|++.++...++.|
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~~~~~~~~   35 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFG   35 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCCeEEee
Confidence            568999999999999999999999986655443

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.19  E-value=1.9e-07  Score=75.47  Aligned_cols=31  Identities=19%  Similarity=0.453  Sum_probs=26.9

Q ss_pred             EEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          40 VAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      |+|+|++||||||+++.||+.++.+++..|.
T Consensus         4 IvliG~~G~GKSTig~~La~~l~~~fiD~D~   34 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKALGVGLLDTDV   34 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHTCCEEEHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCeEeecc
Confidence            5577999999999999999999988876653

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.16  E-value=5.3e-07  Score=73.90  Aligned_cols=40  Identities=18%  Similarity=0.072  Sum_probs=34.0

Q ss_pred             ccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          31 GKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        31 ~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      ..++++|.+|+++|++||||||+++.++...+..+|+.|.
T Consensus         8 ~~~~~~p~liil~G~pGsGKST~a~~l~~~~~~~~i~~D~   47 (172)
T d1yj5a2           8 SLLSPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDT   47 (172)
T ss_dssp             CSSCSSCCEEEEECCTTSSHHHHHHHHTGGGTCEEEEHHH
T ss_pred             ccCCCCCEEEEEECCCCCCHHHHHHHHHHhcCCEEEchHH
Confidence            3455778999999999999999999998888877777764

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.12  E-value=9.1e-07  Score=73.10  Aligned_cols=37  Identities=16%  Similarity=0.143  Sum_probs=32.1

Q ss_pred             ccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556          33 LLFRKTKVAILGPTASGKSSVALKISEYIPCEIISID   69 (298)
Q Consensus        33 ~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~D   69 (298)
                      .+++.++|+|+||+||||||+++.|++.++...|+.+
T Consensus         4 ~~~~~~iI~i~GppGSGKsT~a~~La~~~g~~~is~g   40 (196)
T d1ukza_           4 SPDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG   40 (196)
T ss_dssp             CTTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEehh
Confidence            3456789999999999999999999999998777654

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.10  E-value=4.9e-07  Score=72.97  Aligned_cols=23  Identities=30%  Similarity=0.472  Sum_probs=22.0

Q ss_pred             EEEECCCchhHHHHHHHHHhhCC
Q psy8556          40 VAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      |+|+||||||||||++.|++.++
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l~   25 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEECCCCcHHHHHHHHHHhcCC
Confidence            89999999999999999999887

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=98.10  E-value=5.1e-07  Score=72.07  Aligned_cols=32  Identities=13%  Similarity=0.323  Sum_probs=28.4

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          39 KVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      .|+|+||+||||||+++.|++.++.++++.|.
T Consensus         6 ~I~i~G~pGsGKTTia~~La~~l~~~~i~~~~   37 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELASKSGLKYINVGD   37 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCcEEechH
Confidence            47799999999999999999999988887654

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=98.07  E-value=1.2e-06  Score=69.56  Aligned_cols=28  Identities=21%  Similarity=0.354  Sum_probs=25.5

Q ss_pred             eEEEEECCCchhHHHHHHHHHhhCCCeE
Q psy8556          38 TKVAILGPTASGKSSVALKISEYIPCEI   65 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~l~~~i   65 (298)
                      ++|+|+||+||||||+++.|++.++..+
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~~~~   30 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLDNSA   30 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSSEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence            6899999999999999999999998654

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.04  E-value=9.9e-07  Score=70.47  Aligned_cols=29  Identities=17%  Similarity=0.202  Sum_probs=26.6

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      +++|.+|.|+|++||||||+++.|++.++
T Consensus         3 ~~~g~~I~l~G~~GsGKTTia~~La~~L~   31 (183)
T d1m8pa3           3 ATQGFTIFLTGYMNSGKDAIARALQVTLN   31 (183)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            46788999999999999999999999886

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=5.6e-07  Score=73.46  Aligned_cols=28  Identities=32%  Similarity=0.697  Sum_probs=25.6

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCCC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIPC   63 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~~   63 (298)
                      +|.+|.|+|++||||||+|+.|+..++.
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~~   45 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLVC   45 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            6889999999999999999999998763

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=98.02  E-value=8.8e-07  Score=71.78  Aligned_cols=32  Identities=16%  Similarity=0.378  Sum_probs=28.6

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          39 KVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      .|+|+|++||||||+++.||+.++.++++.|.
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~Lg~~~id~D~   35 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARALGYEFVDTDI   35 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHHTCEEEEHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCCEEehhh
Confidence            47789999999999999999999999887764

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.02  E-value=1e-06  Score=72.81  Aligned_cols=36  Identities=19%  Similarity=0.230  Sum_probs=31.6

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      +++++|+|+||+||||||+++.|++.++...|+++.
T Consensus         6 ~~~~iI~l~G~pGSGKsT~a~~La~~~g~~~is~g~   41 (194)
T d3adka_           6 KKSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGD   41 (194)
T ss_dssp             HTSCEEEEEECTTSSHHHHHHHHHHHTCCEEEEHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHhCCeeEeccH
Confidence            467899999999999999999999999987776543

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=98.00  E-value=1.8e-06  Score=69.00  Aligned_cols=29  Identities=24%  Similarity=0.314  Sum_probs=26.2

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPC   63 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~   63 (298)
                      +++..|+|+||+||||||+++.|++.+++
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l~~   31 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAELDG   31 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHhCC
Confidence            56677999999999999999999999874

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=1.7e-06  Score=71.07  Aligned_cols=38  Identities=24%  Similarity=0.257  Sum_probs=31.8

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEecc
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCD   76 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g   76 (298)
                      |.+|+|+||+||||||+++.||+.++...|+.  |.+++.
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~g~~~i~~--g~llR~   38 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSA--GELLRD   38 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH--HHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCceEcH--HHHHHH
Confidence            57899999999999999999999998777654  446543

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.96  E-value=1.2e-06  Score=72.12  Aligned_cols=34  Identities=32%  Similarity=0.255  Sum_probs=29.6

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIPCEIISID   69 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~D   69 (298)
                      +|..|+|+||+||||||++..|++.++...|+++
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~~~~~~is~~   35 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAG   35 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHCCcEEehh
Confidence            4667899999999999999999999997777654

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.94  E-value=2e-06  Score=70.62  Aligned_cols=35  Identities=20%  Similarity=0.351  Sum_probs=29.5

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISID   69 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~D   69 (298)
                      ++|.-|+|+||+||||||+++.||+.++...|+.+
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~~~g~~~i~~g   35 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATG   35 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHHHhCCeEEeHH
Confidence            35556778999999999999999999987777653

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.93  E-value=2.5e-06  Score=71.36  Aligned_cols=39  Identities=33%  Similarity=0.504  Sum_probs=32.7

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEecc
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCD   76 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g   76 (298)
                      +..+|+|.||+||||||+|+.||+.++...+  ++|.+|+.
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~~lg~~~i--stGdl~R~   40 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAKDFGFTYL--DTGAMYRA   40 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHHHHCCEEE--EHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCcEE--CHHHHHHH
Confidence            3457899999999999999999999997765  55667764

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.93  E-value=1.8e-06  Score=69.56  Aligned_cols=31  Identities=23%  Similarity=0.350  Sum_probs=28.0

Q ss_pred             EEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          40 VAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      |+|+|++||||||+++.||+.++.++++.|.
T Consensus         3 I~liG~~GsGKsTi~k~La~~l~~~~~d~d~   33 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDLDLVFLDSDF   33 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHTCEEEEHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEEecCc
Confidence            7888999999999999999999988887664

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.93  E-value=2.4e-06  Score=71.06  Aligned_cols=37  Identities=24%  Similarity=0.523  Sum_probs=31.2

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEec
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYC   75 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~   75 (298)
                      .++|+|.||+||||||+++.|++.++...+  ++|.+|+
T Consensus         3 ~piI~I~GppGSGKgT~ak~La~~~gl~~i--StGdLlR   39 (225)
T d1ckea_           3 APVITIDGPSGAGKGTLCKAMAEALQWHLL--DSGAIYR   39 (225)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEE--EHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCcEE--CHHHHHH
Confidence            459999999999999999999999987765  4455765

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.92  E-value=1.9e-06  Score=70.07  Aligned_cols=27  Identities=26%  Similarity=0.379  Sum_probs=24.2

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      .+-+|+|.||+|||||||++.|+..++
T Consensus        21 ~~~iIgI~G~~GSGKSTla~~L~~~l~   47 (198)
T d1rz3a_          21 GRLVLGIDGLSRSGKTTLANQLSQTLR   47 (198)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            467899999999999999999998765

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.88  E-value=4.6e-06  Score=65.31  Aligned_cols=33  Identities=30%  Similarity=0.271  Sum_probs=25.5

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCC-CeEeecC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIP-CEIISID   69 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~-~~iis~D   69 (298)
                      .++|+|+||+||||||+++.|+.... ..+++.|
T Consensus         2 kklIii~G~pGsGKTTla~~L~~~~~~~~~~~~d   35 (152)
T d1ly1a_           2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRD   35 (152)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhCCCCEEechH
Confidence            46899999999999999999876553 4444444

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.81  E-value=3.5e-06  Score=68.11  Aligned_cols=32  Identities=25%  Similarity=0.295  Sum_probs=28.1

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          39 KVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      .|+|+||+||||||+++.||+.++...|+.+.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~~~~~i~~~~   33 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAYGIPHISTGD   33 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCEEEHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCceechhH
Confidence            37899999999999999999999988776653

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.79  E-value=6e-06  Score=70.59  Aligned_cols=34  Identities=26%  Similarity=0.237  Sum_probs=28.6

Q ss_pred             ccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEe
Q psy8556          33 LLFRKTKVAILGPTASGKSSVALKISEYIPCEII   66 (298)
Q Consensus        33 ~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~ii   66 (298)
                      ..+.|..|.+.||+|||||||++.||+.+++.++
T Consensus        28 ~~~~P~~ilL~GpPGtGKT~la~~la~~~~~~~~   61 (273)
T d1gvnb_          28 AVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVI   61 (273)
T ss_dssp             CCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCE
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHhhcceE
Confidence            3355778999999999999999999999875544

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.79  E-value=4.3e-06  Score=66.35  Aligned_cols=24  Identities=17%  Similarity=0.232  Sum_probs=22.1

Q ss_pred             eEEEEECCCchhHHHHHHHHHhhC
Q psy8556          38 TKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      ++++|+|++|||||||++.|++.+
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~~l   26 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIPAL   26 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHH
Confidence            589999999999999999999765

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.79  E-value=5.4e-06  Score=67.95  Aligned_cols=34  Identities=26%  Similarity=0.381  Sum_probs=29.6

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      .|-+|||+|+.||||||++..|. .++..++++|.
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~-~~g~~~~~~D~   35 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLR-SWGYPVLDLDA   35 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHH-HTTCCEEEHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH-HCCCeEEEccH
Confidence            47899999999999999999994 57888888775

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.78  E-value=7.4e-06  Score=67.65  Aligned_cols=36  Identities=28%  Similarity=0.407  Sum_probs=30.1

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      .+...|+|+||.||||||+++.||+.++...|+++.
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~~~g~~~is~gd   39 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGD   39 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHHHBCCEEEEHHH
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHHHHCCeEEcHHH
Confidence            344568899999999999999999999977776643

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.75  E-value=4.8e-06  Score=74.26  Aligned_cols=69  Identities=14%  Similarity=0.310  Sum_probs=44.0

Q ss_pred             ChHHHHhhhccc-Cchhhhhhccc--------cccccccc---cCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556           3 DVKDVLDRDTET-DPQQRQLTADF--------RRIRTGKL---LFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus         3 ~~~~~~~~~~~~-~~~~~~~~~~~--------~~~~~~~~---~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      .|+|+...-.+. |+|-+ -...+        +.......   +.++.-+.++||||||||.||+.||+.++.+.+..|.
T Consensus         4 ~p~~i~~~L~~~ViGQd~-A~~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA~~~~~~~~~i~~   82 (309)
T d1ofha_           4 TPREIVSELDQHIIGQAD-AKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA   82 (309)
T ss_dssp             CHHHHHHHHHTTCCSCHH-HHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEG
T ss_pred             CHHHHHHHhcCcccChHH-HHHHHHHHHHHHHHHhccCCCCccCCCCceEEEECCCCCCHHHHHHHHhhccccchhcccc
Confidence            477877776664 55543 22222        12111111   1245667899999999999999999998877766654


Q ss_pred             ce
Q psy8556          71 AL   72 (298)
Q Consensus        71 ~q   72 (298)
                      ..
T Consensus        83 s~   84 (309)
T d1ofha_          83 TK   84 (309)
T ss_dssp             GG
T ss_pred             cc
Confidence            33

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.72  E-value=6.3e-06  Score=67.10  Aligned_cols=31  Identities=26%  Similarity=0.341  Sum_probs=27.4

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556          39 KVAILGPTASGKSSVALKISEYIPCEIISID   69 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~D   69 (298)
                      .|+|+||+||||||+++.||+.++...++++
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~g~~~is~g   32 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKYGTPHISTG   32 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCceeeHH
Confidence            4789999999999999999999987777654

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.71  E-value=6.4e-06  Score=66.90  Aligned_cols=32  Identities=34%  Similarity=0.565  Sum_probs=28.1

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          39 KVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      .|+|+||+||||||+++.|++.++...|+++.
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~g~~~i~~~~   33 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKLGIPQISTGE   33 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCCEEEHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCceEchHH
Confidence            37899999999999999999999987776643

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.70  E-value=9.3e-06  Score=68.80  Aligned_cols=37  Identities=14%  Similarity=0.245  Sum_probs=30.0

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHhhC-----CCeEeecCC
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISEYI-----PCEIISIDS   70 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l-----~~~iis~Ds   70 (298)
                      +.+|.+|+++|||||||||.+..||..+     ...+|++|.
T Consensus         8 ~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt   49 (213)
T d1vmaa2           8 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT   49 (213)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecc
Confidence            4678899999999999999999998665     245677775

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.67  E-value=1.1e-05  Score=71.32  Aligned_cols=41  Identities=27%  Similarity=0.258  Sum_probs=32.0

Q ss_pred             ccCCCeEEEEECCCchhHHHHHHHHHhhC--------CCeEeecCCceEec
Q psy8556          33 LLFRKTKVAILGPTASGKSSVALKISEYI--------PCEIISIDSALVYC   75 (298)
Q Consensus        33 ~~~kg~iI~I~GpTGSGKSTLa~~La~~l--------~~~iis~Ds~qvy~   75 (298)
                      .+++|-+|+|.|++|||||||+..|...+        ...++|.|+  +|.
T Consensus        23 ~~~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~Dd--fY~   71 (286)
T d1odfa_          23 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDD--FYL   71 (286)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGG--GBC
T ss_pred             CCCCCEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCC--CCC
Confidence            34568899999999999999998876543        245679998  664

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.66  E-value=6.7e-06  Score=67.61  Aligned_cols=26  Identities=27%  Similarity=0.552  Sum_probs=23.7

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      |.+|+++|.+||||||+++.|++.++
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~   27 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLN   27 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            67899999999999999999998764

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.64  E-value=9.7e-06  Score=64.80  Aligned_cols=25  Identities=12%  Similarity=0.205  Sum_probs=23.2

Q ss_pred             eEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          38 TKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      ++|+|.||+||||||+++.|+..++
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~   26 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLR   26 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHH
Confidence            6899999999999999999998874

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.63  E-value=1.3e-05  Score=65.70  Aligned_cols=32  Identities=22%  Similarity=0.124  Sum_probs=28.0

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHhhCCCeE
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISEYIPCEI   65 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~i   65 (298)
                      +++|.+|+|-|+.||||||+++.|++.++...
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~~l~~~~   37 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEKYKNDIC   37 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGGTTTEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence            46788999999999999999999999887433

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.62  E-value=8.8e-06  Score=65.93  Aligned_cols=32  Identities=28%  Similarity=0.337  Sum_probs=27.8

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          39 KVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      .|+|+||+||||||+++.|++.++...++++.
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~~~~~i~~~~   33 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTGD   33 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCCCEEEHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceechhh
Confidence            47899999999999999999999977776543

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.61  E-value=1.7e-05  Score=66.80  Aligned_cols=36  Identities=19%  Similarity=0.307  Sum_probs=28.8

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCC-----CeEeecCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIP-----CEIISIDS   70 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~-----~~iis~Ds   70 (298)
                      +++.+|+++|||||||||.+..||..+.     ..+|++|.
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt   44 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDT   44 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEecc
Confidence            4678999999999999999999987652     34566664

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.60  E-value=1.4e-05  Score=67.67  Aligned_cols=36  Identities=17%  Similarity=0.288  Sum_probs=25.3

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCC-----CeEeecCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIP-----CEIISIDS   70 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~-----~~iis~Ds   70 (298)
                      ++|.+|+++|||||||||.+..||..+.     ..+|++|.
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt   50 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADV   50 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeec
Confidence            4688999999999999999999987652     45677775

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.60  E-value=1.4e-05  Score=74.79  Aligned_cols=34  Identities=21%  Similarity=0.567  Sum_probs=30.3

Q ss_pred             eEEEEECCCchhHHHHHHHHHhhCCCeEeecCCc
Q psy8556          38 TKVAILGPTASGKSSVALKISEYIPCEIISIDSA   71 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~   71 (298)
                      .=|.++||||||||-||+.||+.++.+++.+|.-
T Consensus        50 sNILliGPTGvGKTlLAr~LAk~l~VPFv~~daT   83 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEAT   83 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGG
T ss_pred             ccEEEECCCCCCHHHHHHHHHHHhCCCEEEeecc
Confidence            3488999999999999999999999998877753

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.60  E-value=1.6e-05  Score=67.15  Aligned_cols=37  Identities=14%  Similarity=0.136  Sum_probs=29.3

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHhhCC-----CeEeecCC
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISEYIP-----CEIISIDS   70 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~-----~~iis~Ds   70 (298)
                      .++|.+|+++|||||||||.+..||..+.     ..+|++|.
T Consensus         6 ~~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt   47 (211)
T d2qy9a2           6 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDT   47 (211)
T ss_dssp             SCTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCT
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeccc
Confidence            35678999999999999999999986552     44666665

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.58  E-value=1.4e-05  Score=65.05  Aligned_cols=32  Identities=19%  Similarity=0.458  Sum_probs=28.0

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          39 KVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      .|+|+||.||||||+++.||..++...|+++.
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~g~~~i~~~d   35 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERFHAAHLATGD   35 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceEeccc
Confidence            37788999999999999999999988777654

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=97.54  E-value=1.8e-05  Score=65.84  Aligned_cols=32  Identities=22%  Similarity=0.328  Sum_probs=28.7

Q ss_pred             eEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          38 TKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      .+|||+|+.||||||+++.|. .+|..++++|.
T Consensus         3 ~iIgITG~igSGKStv~~~l~-~~G~~vidaD~   34 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFT-DLGVPLVDADV   34 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH-TTTCCEEEHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH-HCCCeEEEchH
Confidence            589999999999999999886 57889998886

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.53  E-value=1.3e-05  Score=67.35  Aligned_cols=34  Identities=29%  Similarity=0.323  Sum_probs=30.8

Q ss_pred             cccccccCCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          28 IRTGKLLFRKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        28 ~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      .|+++..++|.+|-|+|.+||||||+++.|+..+
T Consensus        15 ~r~~~~~~kg~vIwltGlsGsGKTTia~~L~~~l   48 (208)
T d1m7ga_          15 ERTELRNQRGLTIWLTGLSASGKSTLAVELEHQL   48 (208)
T ss_dssp             HHHHHHTSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            6777888999999999999999999999998755

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.51  E-value=2.7e-05  Score=65.51  Aligned_cols=36  Identities=22%  Similarity=0.327  Sum_probs=28.7

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhC-----CCeEeecCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYI-----PCEIISIDS   70 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l-----~~~iis~Ds   70 (298)
                      +++.+|.++|||||||||.+..||..+     ...++++|.
T Consensus         8 ~~~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt   48 (207)
T d1ls1a2           8 KDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT   48 (207)
T ss_dssp             CSSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeccc
Confidence            446789999999999999999998765     245677775

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.47  E-value=2.3e-05  Score=62.65  Aligned_cols=24  Identities=21%  Similarity=0.202  Sum_probs=21.9

Q ss_pred             eEEEEECCCchhHHHHHHHHHhhC
Q psy8556          38 TKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      ++++|+|++|||||||+..|+..+
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L   25 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAA   25 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHH
Confidence            589999999999999999998765

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=2.2e-05  Score=62.37  Aligned_cols=23  Identities=35%  Similarity=0.563  Sum_probs=21.4

Q ss_pred             EEEEECCCchhHHHHHHHHHhhC
Q psy8556          39 KVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      .|+|+||+|||||||++.++..+
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHH
Confidence            48999999999999999999876

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.43  E-value=2.4e-05  Score=62.68  Aligned_cols=25  Identities=28%  Similarity=0.337  Sum_probs=23.1

Q ss_pred             eEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          38 TKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      ++|+|.|++||||||+++.|++.++
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~   26 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5889999999999999999998875

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=97.41  E-value=3.7e-05  Score=64.11  Aligned_cols=32  Identities=34%  Similarity=0.379  Sum_probs=28.4

Q ss_pred             eEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          38 TKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      .+|||+|+.||||||+++.|. .+|..++++|.
T Consensus         4 ~iIgitG~igSGKStv~~~l~-~~G~~vidaD~   35 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFA-DLGINVIDADI   35 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHH-HTTCEEEEHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHH-HCCCcEEEchH
Confidence            489999999999999999886 67888998886

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.37  E-value=6.6e-05  Score=63.51  Aligned_cols=34  Identities=18%  Similarity=0.340  Sum_probs=28.3

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIPCEIISID   69 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~D   69 (298)
                      +...+.|.||+|+||||+++.||+.++..++..+
T Consensus        51 ~~~~lll~GPpG~GKTt~a~~la~~~~~~~~~~~   84 (253)
T d1sxja2          51 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQN   84 (253)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHHhhhhccc
Confidence            3457899999999999999999999987665433

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.31  E-value=3.4e-05  Score=65.03  Aligned_cols=29  Identities=28%  Similarity=0.432  Sum_probs=25.1

Q ss_pred             eEEEEECCCchhHHHHHHHHHhhCCCeEe
Q psy8556          38 TKVAILGPTASGKSSVALKISEYIPCEII   66 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~l~~~ii   66 (298)
                      .-+.+.||+|+||||+|+.||+.++.+.+
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~~~~~~~   64 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASELQTNIH   64 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHTCCEE
T ss_pred             CeEEEECCCCCcHHHHHHHHHhccCCCcc
Confidence            34789999999999999999999886544

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=97.27  E-value=7e-05  Score=68.14  Aligned_cols=37  Identities=27%  Similarity=0.499  Sum_probs=30.9

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCc
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSA   71 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~   71 (298)
                      .++.-+.++||||+|||.|++.||+.++.+++..|.-
T Consensus        66 ~p~~niLfiGPTGvGKTElAk~LA~~~~~~~ir~D~s  102 (364)
T d1um8a_          66 LSKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDAT  102 (364)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGG
T ss_pred             CCCcceeeeCCCCccHHHHHHHHHhhcccceeehhhh
Confidence            3455688999999999999999999998887766643

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.23  E-value=8.9e-05  Score=64.17  Aligned_cols=37  Identities=22%  Similarity=0.338  Sum_probs=31.6

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV   73 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv   73 (298)
                      +.-+.+.||+|||||++++.||..++.++++.+...+
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~~~~~~~~~i~~~~l   81 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDF   81 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSS
T ss_pred             CCeEEeeCCCCCCccHHHHHHHHHcCCCEEEEEhHHh
Confidence            4568899999999999999999999988877775444

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.22  E-value=7.5e-05  Score=63.01  Aligned_cols=30  Identities=20%  Similarity=0.113  Sum_probs=27.5

Q ss_pred             eEEEEECCCchhHHHHHHHHHhhCCCeEee
Q psy8556          38 TKVAILGPTASGKSSVALKISEYIPCEIIS   67 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~l~~~iis   67 (298)
                      ++|+|+|+-||||||+++.|+..++..+++
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~~g~~~i~   31 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQ   31 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSCEEECC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCCCeEEc
Confidence            589999999999999999999988877776

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.22  E-value=7.3e-05  Score=64.23  Aligned_cols=34  Identities=38%  Similarity=0.438  Sum_probs=29.1

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDS   70 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds   70 (298)
                      +.-|.+.||+|||||++++.||+.++.+++..++
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~   73 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEESNFPFIKICS   73 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEEC
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhccccccccccc
Confidence            3458899999999999999999999988776554

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.18  E-value=8.8e-05  Score=62.49  Aligned_cols=29  Identities=21%  Similarity=0.430  Sum_probs=24.9

Q ss_pred             eEEEEECCCchhHHHHHHHHHhhCCCeEe
Q psy8556          38 TKVAILGPTASGKSSVALKISEYIPCEII   66 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~l~~~ii   66 (298)
                      +-+.+.||+|+||||+++.+|+.++.+..
T Consensus        36 ~~~Ll~GPpG~GKTtla~~la~~~~~~~~   64 (239)
T d1ixsb2          36 EHLLLFGPPGLGKTTLAHVIAHELGVNLR   64 (239)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCeE
Confidence            44779999999999999999999886544

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.07  E-value=0.00014  Score=64.61  Aligned_cols=36  Identities=25%  Similarity=0.439  Sum_probs=30.4

Q ss_pred             eEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE
Q psy8556          38 TKVAILGPTASGKSSVALKISEYIPCEIISIDSALV   73 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv   73 (298)
                      -.+.++||||+|||.|++.||+.++.+++..|.+.+
T Consensus        53 ~~~lf~Gp~GvGKT~lak~la~~l~~~~i~~d~s~~   88 (315)
T d1r6bx3          53 GSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEY   88 (315)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGC
T ss_pred             eEEEEECCCcchhHHHHHHHHhhccCCeeEeccccc
Confidence            378899999999999999999999888876664433

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.07  E-value=0.00015  Score=60.50  Aligned_cols=32  Identities=22%  Similarity=0.526  Sum_probs=25.3

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCC----CeEeecCC
Q psy8556          39 KVAILGPTASGKSSVALKISEYIP----CEIISIDS   70 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~----~~iis~Ds   70 (298)
                      +|+|+||.|||||||+..|...+.    ..+|+.|.
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~~~~~~~~ivn~d~   37 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDT   37 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCS
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhCCeEEEEecCc
Confidence            789999999999999999986543    34555554

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=8.6e-05  Score=62.12  Aligned_cols=28  Identities=29%  Similarity=0.338  Sum_probs=25.5

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCCC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIPC   63 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~~   63 (298)
                      +.++|+|-|+-||||||+++.|++.++.
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l~~   28 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLCED   28 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            4689999999999999999999999864

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=97.06  E-value=0.00021  Score=64.91  Aligned_cols=62  Identities=16%  Similarity=0.164  Sum_probs=42.8

Q ss_pred             HHHhhhcccCchhhhhhcc-ccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556           6 DVLDRDTETDPQQRQLTAD-FRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISID   69 (298)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~D   69 (298)
                      .+++-....|.+....+.. ++....+.  +++..+.+.||+|+|||++++.||+.+++.+++..
T Consensus       124 ~il~~l~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~g~~~~gk~~~~~~~~~~~~~~~i~in  186 (362)
T d1svma_         124 AGVAWLHCLLPKMDSVVYDFLKCMVYNI--PKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVN  186 (362)
T ss_dssp             HHHHHHTTTSTTHHHHHHHHHHHHHHCC--TTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCS
T ss_pred             HHHHHHHhcccchHHHHHHHHHHHHhCC--CCcCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEE
Confidence            3445555556655544333 22222222  55678999999999999999999999999888754

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.05  E-value=0.00019  Score=61.57  Aligned_cols=37  Identities=19%  Similarity=0.308  Sum_probs=30.7

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV   73 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv   73 (298)
                      +.-+.+.||+|||||++++.||+.++..++..+..++
T Consensus        42 ~~giLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l   78 (247)
T d1ixza_          42 PKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF   78 (247)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred             CceEEEecCCCCChhHHHHHHHHHcCCCEEEEEhHHh
Confidence            4458999999999999999999999988876664333

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00014  Score=60.73  Aligned_cols=28  Identities=25%  Similarity=0.292  Sum_probs=25.3

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      ++|.+|+|-|+-||||||+++.|++.+.
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~   28 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEALC   28 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4789999999999999999999988763

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.97  E-value=0.00026  Score=61.23  Aligned_cols=37  Identities=27%  Similarity=0.388  Sum_probs=31.3

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV   73 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv   73 (298)
                      +.-|.|.||+|+|||+|++.+|+.++.+++..+...+
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~~~~~l   77 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL   77 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHHTTCEEEEECHHHH
T ss_pred             CCeEEEECCCCCcchhHHHHHHHHhCCcEEEEEHHHh
Confidence            4458899999999999999999999988887765443

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.00023  Score=57.21  Aligned_cols=27  Identities=11%  Similarity=0.197  Sum_probs=23.9

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      ++|.++.|.||+|||||+|+..+|...
T Consensus        21 ~~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          21 ETGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             cCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            568899999999999999999998654

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=96.86  E-value=2.4e-05  Score=62.77  Aligned_cols=26  Identities=15%  Similarity=0.203  Sum_probs=21.8

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      +.+.+|+|||||||||++.+|.-.+.
T Consensus        24 ~~~tvi~G~NGsGKStil~Ai~~~L~   49 (222)
T d1qhla_          24 ELVTTLSGGNGAGKSTTMAAFVTALI   49 (222)
T ss_dssp             HHHHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence            34678999999999999999976553

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.83  E-value=0.00027  Score=59.03  Aligned_cols=26  Identities=23%  Similarity=0.417  Sum_probs=22.6

Q ss_pred             eEEEEECCCchhHHHHHHHHHhhCCC
Q psy8556          38 TKVAILGPTASGKSSVALKISEYIPC   63 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~l~~   63 (298)
                      .-+.|.||+|+||||+++.+|+.+.+
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~l~~   71 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALARELFG   71 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHHh
Confidence            34789999999999999999987653

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.82  E-value=0.00098  Score=59.44  Aligned_cols=59  Identities=15%  Similarity=0.257  Sum_probs=39.4

Q ss_pred             HHhhhcccCchhh----hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCC-----CeEeecCC
Q psy8556           7 VLDRDTETDPQQR----QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIP-----CEIISIDS   70 (298)
Q Consensus         7 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~-----~~iis~Ds   70 (298)
                      +|-.+++.+|...    .++..+.+.     ..+..+|+|+||+|||||||...|++.+.     ..++..|-
T Consensus        25 ~it~vE~~~~~~~~~~~~ll~~~~~~-----~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDp   92 (327)
T d2p67a1          25 AMTLVESRHPRHQALSTQLLDAIMPY-----CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP   92 (327)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHGGG-----CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             HHHHHhCCCcccHHHHHHHHHHhhhc-----cCCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCC
Confidence            4555666666653    344444432     23467899999999999999999987642     34555554

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.81  E-value=0.00024  Score=58.70  Aligned_cols=26  Identities=23%  Similarity=0.350  Sum_probs=24.1

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      +|++|+|-|+-||||||++..|++.+
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L   26 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETL   26 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            58899999999999999999999876

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.79  E-value=0.00032  Score=58.56  Aligned_cols=27  Identities=19%  Similarity=0.239  Sum_probs=25.6

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      ||++|+|-|+-||||||+++.|++.+.
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~   28 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQ   28 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence            689999999999999999999999886

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.77  E-value=0.00054  Score=58.81  Aligned_cols=35  Identities=17%  Similarity=0.333  Sum_probs=29.3

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCc
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDSA   71 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~   71 (298)
                      +.-+.+.||+|||||++++.+|..++..++..+..
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~~~~~~~~~i~~~   72 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVANETGAFFFLINGP   72 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHTTCEEEEECHH
T ss_pred             CceeEEecCCCCCchHHHHHHHHHhCCeEEEEEch
Confidence            34478999999999999999999998877766543

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.76  E-value=0.00041  Score=58.79  Aligned_cols=27  Identities=22%  Similarity=0.246  Sum_probs=23.2

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      ++++.+++|+||+|||||++.|.+...
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~  120 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGLK  120 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchhh
Confidence            467899999999999999999976543

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.72  E-value=0.00037  Score=58.49  Aligned_cols=27  Identities=22%  Similarity=0.353  Sum_probs=23.8

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      .+..+.|.||+|+|||++++.|+..+.
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHh
Confidence            356789999999999999999998874

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.70  E-value=0.00039  Score=56.78  Aligned_cols=46  Identities=24%  Similarity=0.229  Sum_probs=33.8

Q ss_pred             cccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556          28 IRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY   74 (298)
Q Consensus        28 ~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy   74 (298)
                      ++++...-.+.-+.|.|++|+||||++..|... +..+++-|...++
T Consensus         6 ~H~~~v~~~g~gvli~G~sG~GKS~lal~l~~~-G~~lvaDD~v~~~   51 (177)
T d1knxa2           6 IHGVLLEVFGVGVLLTGRSGIGKSECALDLINK-NHLFVGDDAIEIY   51 (177)
T ss_dssp             EEEEEEEETTEEEEEEESSSSSHHHHHHHHHTT-TCEEEEEEEEEEE
T ss_pred             EEEEEEEECCEEEEEEcCCCCCHHHHHHHHHHc-CCceecCCeEEEE
Confidence            444444556777999999999999999998754 6677766654443

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.00043  Score=57.97  Aligned_cols=27  Identities=26%  Similarity=0.365  Sum_probs=25.2

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCCC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIPC   63 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~~   63 (298)
                      |++|+|-|+-||||||+++.|++.++.
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~~   28 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYPE   28 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhh
Confidence            789999999999999999999999873

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.66  E-value=0.00054  Score=55.89  Aligned_cols=44  Identities=25%  Similarity=0.203  Sum_probs=32.8

Q ss_pred             ccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE
Q psy8556          29 RTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV   73 (298)
Q Consensus        29 ~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv   73 (298)
                      +++...-.+.-+.|.|++|+||||++..|... +..+|+-|...+
T Consensus         6 H~~~v~~~g~gvl~~G~sG~GKStlal~l~~~-g~~lv~DD~~~i   49 (176)
T d1kkma_           6 HGVLVDIYGLGVLITGDSGVGKSETALELVQR-GHRLIADDRVDV   49 (176)
T ss_dssp             EEEEEEETTEEEEEECCTTSCHHHHHHHHHHT-TCEEEEEEEEEE
T ss_pred             EEEEEEECCEEEEEEeCCCCCHHHHHHHHHHc-CCeEEecCeEEE
Confidence            34444455677999999999999999998765 677776665444

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.66  E-value=0.00037  Score=57.96  Aligned_cols=23  Identities=26%  Similarity=0.583  Sum_probs=20.9

Q ss_pred             EEEEECCCchhHHHHHHHHHhhC
Q psy8556          39 KVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      -+.|.||+|+||||+++.+++.+
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHHHH
Confidence            37899999999999999999875

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.60  E-value=0.00079  Score=53.88  Aligned_cols=28  Identities=18%  Similarity=0.192  Sum_probs=26.2

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      ++|.+|.+.|+=||||||+++.+++.++
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg   58 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence            5678999999999999999999999997

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.59  E-value=0.0004  Score=61.92  Aligned_cols=23  Identities=43%  Similarity=0.670  Sum_probs=21.6

Q ss_pred             EEEECCCchhHHHHHHHHHhhCC
Q psy8556          40 VAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      |+|+|||||||||+++.|++..+
T Consensus       169 ili~G~tgSGKTT~l~al~~~i~  191 (323)
T d1g6oa_         169 VIVCGGTGSGKTTYIKSIMEFIP  191 (323)
T ss_dssp             EEEEESTTSSHHHHHHHHGGGSC
T ss_pred             EEEEeeccccchHHHHHHhhhcc
Confidence            89999999999999999998876

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=96.49  E-value=0.00089  Score=54.18  Aligned_cols=46  Identities=20%  Similarity=0.197  Sum_probs=33.8

Q ss_pred             cccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556          28 IRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY   74 (298)
Q Consensus        28 ~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy   74 (298)
                      ++++...-.+.-+.|.|++|+||||++..|... +..+|+-|...+.
T Consensus         6 ~H~~~v~~~g~gvli~G~sg~GKS~la~~l~~~-g~~li~DD~~~~~   51 (169)
T d1ko7a2           6 LHGVLVDVYGVGVLITGDSGIGKSETALELIKR-GHRLVADDNVEIR   51 (169)
T ss_dssp             EESEEEEETTEEEEEEESTTSSHHHHHHHHHHT-TCEEEESSEEEEE
T ss_pred             EEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHc-CCeEEeCCeEEEE
Confidence            344445556778999999999999999888766 6677755554443

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.49  E-value=0.00068  Score=60.12  Aligned_cols=32  Identities=31%  Similarity=0.509  Sum_probs=25.5

Q ss_pred             EEEEECCCchhHHHHHHHHHhhC---CCeEeecCC
Q psy8556          39 KVAILGPTASGKSSVALKISEYI---PCEIISIDS   70 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l---~~~iis~Ds   70 (298)
                      ++.++||||+|||.+|+.||+.+   +..++..|.
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~   89 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM   89 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECT
T ss_pred             EEEEECCCcchHHHHHHHHHHHhcCCCcceEEEec
Confidence            77899999999999999999986   234554443

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.44  E-value=0.00071  Score=56.71  Aligned_cols=27  Identities=22%  Similarity=0.164  Sum_probs=23.8

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCCC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIPC   63 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~~   63 (298)
                      +..++|.||.|+|||+|++.++...+.
T Consensus        29 ~~~i~i~G~~G~GKTsLl~~~~~~~~~   55 (283)
T d2fnaa2          29 APITLVLGLRRTGKSSIIKIGINELNL   55 (283)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHCCC
Confidence            467899999999999999999987763

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.43  E-value=0.00056  Score=55.44  Aligned_cols=22  Identities=27%  Similarity=0.379  Sum_probs=20.2

Q ss_pred             EEEEECCCchhHHHHHHHHHhh
Q psy8556          39 KVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      .|+|+|++|||||||++.|.+.
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHhcCC
Confidence            5999999999999999999753

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.39  E-value=0.0055  Score=54.26  Aligned_cols=27  Identities=26%  Similarity=0.331  Sum_probs=23.5

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      .+..+|+|+||.|||||||...|...+
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHHHH
Confidence            346789999999999999999998754

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.36  E-value=0.00085  Score=55.60  Aligned_cols=48  Identities=13%  Similarity=0.041  Sum_probs=33.5

Q ss_pred             ccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          13 ETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      ..||-++.....+...-.  ..+-+..+.+.||.|+||||+++.+|+.+.
T Consensus         2 ~~yPw~~~~~~~l~~~~~--~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~   49 (207)
T d1a5ta2           2 RWYPWLRPDFEKLVASYQ--AGRGHHALLIQALPGMGDDALIYALSRYLL   49 (207)
T ss_dssp             CCCGGGHHHHHHHHHHHH--TTCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCCcccHHHHHHHHHHHH--cCCcCeEEEEECCCCCcHHHHHHHHHHhcc
Confidence            358877655555444111  122356689999999999999999998764

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.35  E-value=0.00066  Score=58.67  Aligned_cols=26  Identities=35%  Similarity=0.426  Sum_probs=22.3

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      +.+.+|+|||||||||++.+|+-.++
T Consensus        24 ~~lnvlvG~NgsGKS~iL~Ai~~~lg   49 (308)
T d1e69a_          24 DRVTAIVGPNGSGKSNIIDAIKWVFG   49 (308)
T ss_dssp             SSEEEEECCTTTCSTHHHHHHHHTSC
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            45889999999999999999976554

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.35  E-value=0.00068  Score=56.32  Aligned_cols=24  Identities=17%  Similarity=0.182  Sum_probs=21.6

Q ss_pred             EEEECCCchhHHHHHHHHHhhCCC
Q psy8556          40 VAILGPTASGKSSVALKISEYIPC   63 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~~l~~   63 (298)
                      +.+.||+|+||||+++.+++.+.+
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~l~~   62 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHELLG   62 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHG
T ss_pred             EEEECCCCCCchhhHHHHHHHHhc
Confidence            679999999999999999988753

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.34  E-value=0.00082  Score=53.23  Aligned_cols=22  Identities=32%  Similarity=0.406  Sum_probs=19.5

Q ss_pred             EEEEECCCchhHHHHHHHHHhh
Q psy8556          39 KVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      .|+|+|+++||||||++.|.+.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~   23 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKK   23 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999764

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.31  E-value=0.00068  Score=55.96  Aligned_cols=25  Identities=16%  Similarity=0.248  Sum_probs=22.6

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHh
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISE   59 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~   59 (298)
                      ++|.++.|.||+|||||+|+..++-
T Consensus        32 ~~G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          32 ETGSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             ESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred             cCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            5688999999999999999998864

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=96.31  E-value=0.00091  Score=51.52  Aligned_cols=21  Identities=24%  Similarity=0.445  Sum_probs=19.2

Q ss_pred             EEEECCCchhHHHHHHHHHhh
Q psy8556          40 VAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~~   60 (298)
                      |+|+|++|||||||++.|.+.
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            789999999999999999754

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.29  E-value=0.00091  Score=61.21  Aligned_cols=28  Identities=25%  Similarity=0.271  Sum_probs=23.7

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      .+.-+|+|+|||||||||++..+...++
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~  183 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQELN  183 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhhhhc
Confidence            4456799999999999999999987654

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=96.29  E-value=0.00076  Score=57.42  Aligned_cols=48  Identities=21%  Similarity=0.305  Sum_probs=35.6

Q ss_pred             hHHHHhhhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556           4 VKDVLDRDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      |=|+++.-+...|.=.+++.++-+         +.++.|+|++|+|||||+..||..
T Consensus         5 p~~~~~~~~~~~p~~d~li~G~~p---------g~~~~i~G~~G~GKS~l~l~la~~   52 (274)
T d1nlfa_           5 PINILEAFAAAPPPLDYVLPNMVA---------GTVGALVSPGGAGKSMLALQLAAQ   52 (274)
T ss_dssp             CCCHHHHHHSCCCCCCEEETTEET---------TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CccHHHHhcCCCCCHHHHhCCccC---------CcEEEEEeCCCCCHHHHHHHHHHH
Confidence            346677777777776666544322         567899999999999999998764

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.29  E-value=0.001  Score=54.03  Aligned_cols=23  Identities=30%  Similarity=0.486  Sum_probs=20.9

Q ss_pred             eEEEEECCCchhHHHHHHHHHhh
Q psy8556          38 TKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      +.|+|+|+++||||||++.|.+.
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999999865

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.29  E-value=0.00065  Score=57.71  Aligned_cols=27  Identities=26%  Similarity=0.311  Sum_probs=21.6

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      ++++.+++|+||+|||||++.|.+...
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~  122 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELG  122 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC---
T ss_pred             ccceEEEECCCCccHHHHHHhhccHhH
Confidence            467789999999999999999976543

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.28  E-value=0.00085  Score=55.92  Aligned_cols=26  Identities=19%  Similarity=0.300  Sum_probs=23.3

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      ++|.++.|.||+|||||||+..++..
T Consensus        34 p~G~~~li~G~pGsGKT~~~lq~~~~   59 (254)
T d1pzna2          34 ETQAITEVFGEFGSGKTQLAHTLAVM   59 (254)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence            66889999999999999999988754

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.25  E-value=0.00092  Score=54.45  Aligned_cols=24  Identities=29%  Similarity=0.369  Sum_probs=21.8

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCC
Q psy8556          39 KVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      +|+|-|+-||||||+++.|++.+.
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~   25 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999998763

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.25  E-value=0.0006  Score=57.48  Aligned_cols=24  Identities=17%  Similarity=0.218  Sum_probs=20.9

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCC
Q psy8556          39 KVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      ++.|.||+|+|||++++.+++.+.
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l~   71 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRVS   71 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHHH
Confidence            456679999999999999998864

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.23  E-value=0.00095  Score=55.28  Aligned_cols=23  Identities=26%  Similarity=0.501  Sum_probs=20.9

Q ss_pred             EEEECCCchhHHHHHHHHHhhCC
Q psy8556          40 VAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      +.|.||+|+||||+++.+|+.+.
T Consensus        38 lLl~Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHHHHhh
Confidence            67999999999999999998764

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.20  E-value=0.0011  Score=50.82  Aligned_cols=22  Identities=18%  Similarity=0.295  Sum_probs=19.7

Q ss_pred             EEEECCCchhHHHHHHHHHhhC
Q psy8556          40 VAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~~l   61 (298)
                      |+|+|++++|||||++.|.+..
T Consensus         3 I~liG~~nvGKSSLln~l~~~~   24 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKNDR   24 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999998643

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.20  E-value=0.00096  Score=52.55  Aligned_cols=26  Identities=19%  Similarity=0.341  Sum_probs=21.6

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      ++..-|+|+|++|||||||+..|.+.
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            44456889999999999999999653

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.17  E-value=0.0014  Score=54.32  Aligned_cols=26  Identities=12%  Similarity=0.139  Sum_probs=23.5

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      ++|.++.|.||+|||||+++..++..
T Consensus        35 p~G~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          35 ESMAITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             cCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            67889999999999999999999753

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.16  E-value=0.00081  Score=56.32  Aligned_cols=23  Identities=26%  Similarity=0.572  Sum_probs=21.0

Q ss_pred             EEEEECCCchhHHHHHHHHHhhC
Q psy8556          39 KVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      -+.|.||+|+||||+++.+|+.+
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHhh
Confidence            47799999999999999999875

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.16  E-value=0.0095  Score=46.52  Aligned_cols=24  Identities=29%  Similarity=0.468  Sum_probs=20.9

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhh
Q psy8556          37 KTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      .--|+|+|.+|||||||+..|.+.
T Consensus        15 ~~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          15 EHKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            345889999999999999999764

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.14  E-value=0.00087  Score=53.33  Aligned_cols=22  Identities=18%  Similarity=0.406  Sum_probs=19.7

Q ss_pred             EEEEECCCchhHHHHHHHHHhh
Q psy8556          39 KVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      .|+|+|++++|||||++.|.+.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3899999999999999999753

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.11  E-value=0.0013  Score=58.75  Aligned_cols=25  Identities=36%  Similarity=0.481  Sum_probs=21.1

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      +.+.+|+||||||||+++.+|+=.+
T Consensus        25 ~~l~~i~G~NGsGKS~ileAi~~~l   49 (427)
T d1w1wa_          25 SNFTSIIGPNGSGKSNMMDAISFVL   49 (427)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            4578999999999999999986444

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.07  E-value=0.0014  Score=52.21  Aligned_cols=22  Identities=32%  Similarity=0.362  Sum_probs=20.3

Q ss_pred             EEEEECCCchhHHHHHHHHHhh
Q psy8556          39 KVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      +|+|+|.+|||||||++.|.+.
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6999999999999999999864

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.04  E-value=0.004  Score=53.79  Aligned_cols=22  Identities=23%  Similarity=0.373  Sum_probs=20.1

Q ss_pred             EEEECCCchhHHHHHHHHHhhC
Q psy8556          40 VAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~~l   61 (298)
                      +.|+||+|+|||+++..||+.+
T Consensus        42 ~lLVG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          42 PLLVGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEECCCCCcHHHHHHHHHHHH
Confidence            6799999999999999999864

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=96.03  E-value=0.0015  Score=50.82  Aligned_cols=23  Identities=35%  Similarity=0.410  Sum_probs=20.3

Q ss_pred             eEEEEECCCchhHHHHHHHHHhh
Q psy8556          38 TKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      --|+|+|+++||||||++.|.+.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            35899999999999999999754

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.01  E-value=0.0022  Score=49.47  Aligned_cols=24  Identities=21%  Similarity=0.414  Sum_probs=20.7

Q ss_pred             eEEEEECCCchhHHHHHHHHHhhC
Q psy8556          38 TKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      --|+|+|.+|||||||++.+.+.-
T Consensus         6 ~kI~ivG~~~vGKSSLi~~~~~~~   29 (169)
T d1upta_           6 MRILILGLDGAGKTTILYRLQVGE   29 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            348899999999999999997653

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=95.99  E-value=0.0018  Score=55.25  Aligned_cols=26  Identities=12%  Similarity=0.056  Sum_probs=23.0

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      .+|++++|.|+||+|||+|+..++-.
T Consensus        33 ~~G~l~vi~G~~G~GKT~~~~~la~~   58 (277)
T d1cr2a_          33 RGGEVIMVTSGSGMGKSTFVRQQALQ   58 (277)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHh
Confidence            56889999999999999999988753

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.99  E-value=0.0016  Score=51.45  Aligned_cols=22  Identities=32%  Similarity=0.380  Sum_probs=19.9

Q ss_pred             EEEEECCCchhHHHHHHHHHhh
Q psy8556          39 KVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      +|+|+|.+++|||||++.|.+.
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999753

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.94  E-value=0.0012  Score=52.61  Aligned_cols=21  Identities=29%  Similarity=0.450  Sum_probs=19.2

Q ss_pred             EEEECCCchhHHHHHHHHHhh
Q psy8556          40 VAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~~   60 (298)
                      |+|+|.++||||||++.|.+.
T Consensus         4 VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            899999999999999999653

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.93  E-value=0.0016  Score=53.52  Aligned_cols=27  Identities=15%  Similarity=0.170  Sum_probs=24.0

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      ++|.++.|.|++|+|||+|+..+|-..
T Consensus        32 ~~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          32 ESQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            568899999999999999999998654

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=95.92  E-value=0.00095  Score=53.47  Aligned_cols=21  Identities=29%  Similarity=0.400  Sum_probs=19.1

Q ss_pred             EEEECCCchhHHHHHHHHHhh
Q psy8556          40 VAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~~   60 (298)
                      |+|+|++++|||||++.|.+.
T Consensus         4 VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEEE
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            899999999999999999653

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.90  E-value=0.0022  Score=51.09  Aligned_cols=24  Identities=38%  Similarity=0.398  Sum_probs=20.9

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhh
Q psy8556          37 KTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      +--|+|+|.+|+|||||++.|.+.
T Consensus         8 ~~kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           8 AIKVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC
Confidence            346899999999999999999764

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.89  E-value=0.0016  Score=53.24  Aligned_cols=24  Identities=13%  Similarity=0.227  Sum_probs=21.5

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHH
Q psy8556          35 FRKTKVAILGPTASGKSSVALKIS   58 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La   58 (298)
                      ++|.++.|.|++|||||+|+..++
T Consensus        24 ~~G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          24 PIGRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHH
Confidence            578899999999999999998765

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.86  E-value=0.0024  Score=54.13  Aligned_cols=25  Identities=24%  Similarity=0.384  Sum_probs=21.6

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      ...+++|.|||+|||||+++.++-.
T Consensus        40 ~~~~~iiTGpN~~GKSt~lk~i~l~   64 (234)
T d1wb9a2          40 QRRMLIITGPNMGGKSTYMRQTALI   64 (234)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEEeccCchhhHHHHHHHHHH
Confidence            3568999999999999999998753

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.85  E-value=0.0018  Score=53.90  Aligned_cols=27  Identities=22%  Similarity=0.420  Sum_probs=23.9

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      +++.++.|.||+|||||+|+..++...
T Consensus        24 ~~gsl~li~G~pGsGKT~l~~qia~~~   50 (242)
T d1tf7a2          24 FKDSIILATGATGTGKTLLVSRFVENA   50 (242)
T ss_dssp             ESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            568899999999999999999998663

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=95.75  E-value=0.0027  Score=48.31  Aligned_cols=28  Identities=21%  Similarity=0.080  Sum_probs=21.9

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      .+-++..|.+|||||||+++..++...+
T Consensus         6 ~~~~~~ll~apTGsGKT~~~~~~~~~~~   33 (136)
T d1a1va1           6 QSFQVAHLHAPTGSGKSTKVPAAYAAQG   33 (136)
T ss_dssp             SSCEEEEEECCTTSCTTTHHHHHHHTTT
T ss_pred             cCCCEEEEEeCCCCCHHHHHHHHHHHcC
Confidence            3456789999999999999876665544

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=95.64  E-value=0.0029  Score=49.43  Aligned_cols=22  Identities=23%  Similarity=0.442  Sum_probs=19.6

Q ss_pred             EEEEECCCchhHHHHHHHHHhh
Q psy8556          39 KVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      -|+|+|++|||||||+..|.+.
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~   25 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGE   25 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            4889999999999999999754

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.63  E-value=0.0029  Score=51.47  Aligned_cols=22  Identities=23%  Similarity=0.306  Sum_probs=20.0

Q ss_pred             EEEEECCCchhHHHHHHHHHhh
Q psy8556          39 KVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      -|+|+|+++||||||++.|.+.
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999764

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=95.63  E-value=0.0013  Score=51.86  Aligned_cols=24  Identities=29%  Similarity=0.374  Sum_probs=21.0

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhh
Q psy8556          37 KTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      ..-|+|+|++++|||||++.|.+.
T Consensus        16 ~~~I~lvG~~NvGKSSL~n~L~~~   39 (188)
T d1puia_          16 GIEVAFAGRSNAGKSSALNTLTNQ   39 (188)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            567999999999999999999653

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.58  E-value=0.0015  Score=50.70  Aligned_cols=21  Identities=24%  Similarity=0.398  Sum_probs=19.7

Q ss_pred             EEEECCCchhHHHHHHHHHhh
Q psy8556          40 VAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~~   60 (298)
                      |+|+|.+++|||||++.|.+.
T Consensus         3 I~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            899999999999999999875

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.55  E-value=0.0028  Score=54.15  Aligned_cols=26  Identities=23%  Similarity=0.279  Sum_probs=22.4

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      +.+..|+|+|.||||||||++.|.+.
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCC
Confidence            34567999999999999999999864

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.50  E-value=0.0023  Score=56.83  Aligned_cols=24  Identities=25%  Similarity=0.375  Sum_probs=21.1

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCC
Q psy8556          39 KVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      ++.++||+|+|||.|++.||+.++
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~~~  148 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEALG  148 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHHHhc
Confidence            455689999999999999999875

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=95.48  E-value=0.0034  Score=49.18  Aligned_cols=22  Identities=23%  Similarity=0.336  Sum_probs=19.2

Q ss_pred             EEEEECCCchhHHHHHHHHHhh
Q psy8556          39 KVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      -|+|+|++|||||||+..+...
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3789999999999999999753

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.48  E-value=0.0034  Score=49.50  Aligned_cols=21  Identities=24%  Similarity=0.531  Sum_probs=19.1

Q ss_pred             EEEECCCchhHHHHHHHHHhh
Q psy8556          40 VAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~~   60 (298)
                      |+++|++|||||||+..+...
T Consensus         8 i~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            789999999999999998754

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=95.38  E-value=0.004  Score=52.33  Aligned_cols=23  Identities=30%  Similarity=0.385  Sum_probs=20.1

Q ss_pred             eEEEEECCCchhHHHHHHHHHhh
Q psy8556          38 TKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      .+++|.|||++||||+++.++-.
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~l~   58 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTALI   58 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHHHH
T ss_pred             cEEEEECCCccccchhhhhhHHH
Confidence            47899999999999999988643

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.35  E-value=0.004  Score=49.05  Aligned_cols=20  Identities=35%  Similarity=0.536  Sum_probs=18.5

Q ss_pred             EEEECCCchhHHHHHHHHHh
Q psy8556          40 VAILGPTASGKSSVALKISE   59 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~   59 (298)
                      |+|+|++|||||||+..+..
T Consensus         5 i~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            78999999999999999875

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.34  E-value=0.015  Score=47.77  Aligned_cols=22  Identities=18%  Similarity=0.442  Sum_probs=20.3

Q ss_pred             EEEECCCchhHHHHHHHHHhhC
Q psy8556          40 VAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~~l   61 (298)
                      ++|+||+|+|||+++..||..+
T Consensus        46 ~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          46 PVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             eEEEecCCcccHHHHHHHHHHH
Confidence            6899999999999999999865

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.33  E-value=0.004  Score=48.68  Aligned_cols=20  Identities=30%  Similarity=0.489  Sum_probs=18.5

Q ss_pred             EEEECCCchhHHHHHHHHHh
Q psy8556          40 VAILGPTASGKSSVALKISE   59 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~   59 (298)
                      |+|+|++|+|||||+..+..
T Consensus         5 v~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998875

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.26  E-value=0.0039  Score=49.77  Aligned_cols=20  Identities=20%  Similarity=0.478  Sum_probs=18.5

Q ss_pred             EEEECCCchhHHHHHHHHHh
Q psy8556          40 VAILGPTASGKSSVALKISE   59 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~   59 (298)
                      |+|+|++|+|||||++.+..
T Consensus         8 i~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            78999999999999999874

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.20  E-value=0.0033  Score=55.31  Aligned_cols=23  Identities=26%  Similarity=0.586  Sum_probs=21.7

Q ss_pred             EEEECCCchhHHHHHHHHHhhCC
Q psy8556          40 VAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      +.|.||.|+|||||++.+++.++
T Consensus        31 vLl~G~pG~GKT~lar~~~~iLp   53 (333)
T d1g8pa_          31 VLVFGDRGTGKSTAVRALAALLP   53 (333)
T ss_dssp             EEEECCGGGCTTHHHHHHHHHSC
T ss_pred             EEEECCCCccHHHHHHHHHHhCC
Confidence            78999999999999999999885

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=95.20  E-value=0.0026  Score=47.57  Aligned_cols=24  Identities=17%  Similarity=0.145  Sum_probs=20.0

Q ss_pred             cccCCCeEEEEECCCchhHHHHHH
Q psy8556          32 KLLFRKTKVAILGPTASGKSSVAL   55 (298)
Q Consensus        32 ~~~~kg~iI~I~GpTGSGKSTLa~   55 (298)
                      ++.++++.++|.+|||||||..+.
T Consensus         2 ~~l~~~~~~il~~~tGsGKT~~~~   25 (140)
T d1yksa1           2 HMLKKGMTTVLDFHPGAGKTRRFL   25 (140)
T ss_dssp             CTTSTTCEEEECCCTTSSTTTTHH
T ss_pred             hHHHcCCcEEEEcCCCCChhHHHH
Confidence            456788899999999999996653

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=95.19  E-value=0.0062  Score=50.41  Aligned_cols=45  Identities=22%  Similarity=0.428  Sum_probs=33.7

Q ss_pred             hhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEee
Q psy8556          21 LTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIIS   67 (298)
Q Consensus        21 ~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis   67 (298)
                      ++..++..-.+.  +|...++|.||.++|||+++..|++.+++.+++
T Consensus        39 Fl~~l~~~l~~~--PKkn~i~~~GP~~TGKS~f~~sl~~~l~G~vis   83 (205)
T d1tuea_          39 FLGALKSFLKGT--PKKNCLVFCGPANTGKSYFGMSFIHFIQGAVIS   83 (205)
T ss_dssp             HHHHHHHHHHTC--TTCSEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred             HHHHHHHHHcCC--CCceEEEEECCCCccHHHHHHHHHHHhCCEEEe
Confidence            344444432232  555789999999999999999999999877764

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.19  E-value=0.0073  Score=47.19  Aligned_cols=22  Identities=32%  Similarity=0.514  Sum_probs=19.7

Q ss_pred             EEEEECCCchhHHHHHHHHHhh
Q psy8556          39 KVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      -|+|+|.+|+|||||+..+...
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4889999999999999999764

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=95.18  E-value=0.0054  Score=48.19  Aligned_cols=25  Identities=16%  Similarity=0.422  Sum_probs=21.2

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHh
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISE   59 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~   59 (298)
                      ++.--|+|+|+.|||||||++.+.+
T Consensus        14 ~~~~kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          14 DQEVRILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhc
Confidence            4455689999999999999999854

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.14  E-value=0.0055  Score=51.33  Aligned_cols=26  Identities=19%  Similarity=0.261  Sum_probs=22.8

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      +..+.|.||+|+||||+++.++..+.
T Consensus        34 ~~~~Ll~Gp~G~GKtt~a~~~~~~l~   59 (239)
T d1njfa_          34 HHAYLFSGTRGVGKTSIARLLAKGLN   59 (239)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeeEEEECCCCCcHHHHHHHHHHHhc
Confidence            45688999999999999999998764

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.13  E-value=0.0051  Score=48.60  Aligned_cols=21  Identities=33%  Similarity=0.542  Sum_probs=18.8

Q ss_pred             EEEECCCchhHHHHHHHHHhh
Q psy8556          40 VAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~~   60 (298)
                      |+|+|++|||||||+..+...
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            789999999999999998754

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.09  E-value=0.0053  Score=48.59  Aligned_cols=21  Identities=24%  Similarity=0.502  Sum_probs=18.9

Q ss_pred             EEEECCCchhHHHHHHHHHhh
Q psy8556          40 VAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~~   60 (298)
                      |+|+|+.|||||||+..+...
T Consensus         7 i~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998653

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.08  E-value=0.0051  Score=48.28  Aligned_cols=20  Identities=40%  Similarity=0.670  Sum_probs=18.3

Q ss_pred             EEEECCCchhHHHHHHHHHh
Q psy8556          40 VAILGPTASGKSSVALKISE   59 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~   59 (298)
                      |+|+|.+|+|||||+..+..
T Consensus         5 i~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999998875

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.04  E-value=0.0054  Score=50.87  Aligned_cols=22  Identities=18%  Similarity=0.312  Sum_probs=20.3

Q ss_pred             EEEECCCchhHHHHHHHHHhhC
Q psy8556          40 VAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~~l   61 (298)
                      +.|.||+|||||.|+.+++..+
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~   60 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEA   60 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHh
Confidence            7899999999999999998765

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.02  E-value=0.0058  Score=47.56  Aligned_cols=20  Identities=15%  Similarity=0.532  Sum_probs=18.6

Q ss_pred             EEEECCCchhHHHHHHHHHh
Q psy8556          40 VAILGPTASGKSSVALKISE   59 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~   59 (298)
                      |+|+|.+|||||||+..+..
T Consensus         5 v~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999999975

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.02  E-value=0.0072  Score=51.93  Aligned_cols=25  Identities=24%  Similarity=0.199  Sum_probs=22.2

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      ...+|+|.|+.|+||||||+.+...
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            4578999999999999999998765

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.96  E-value=0.0052  Score=48.09  Aligned_cols=22  Identities=23%  Similarity=0.552  Sum_probs=19.5

Q ss_pred             EEEEECCCchhHHHHHHHHHhh
Q psy8556          39 KVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      -|+|+|++|+|||||+..+...
T Consensus         5 Ki~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3889999999999999998753

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.93  E-value=0.0062  Score=47.65  Aligned_cols=21  Identities=29%  Similarity=0.414  Sum_probs=18.9

Q ss_pred             EEEECCCchhHHHHHHHHHhh
Q psy8556          40 VAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~~   60 (298)
                      |+|+|.+|+|||||+..+...
T Consensus         7 ivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998753

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.90  E-value=0.0055  Score=48.20  Aligned_cols=21  Identities=14%  Similarity=0.455  Sum_probs=19.2

Q ss_pred             EEEECCCchhHHHHHHHHHhh
Q psy8556          40 VAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~~   60 (298)
                      |+|+|..|||||||++.+...
T Consensus         8 i~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999999863

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.88  E-value=0.0062  Score=47.87  Aligned_cols=21  Identities=33%  Similarity=0.445  Sum_probs=19.0

Q ss_pred             EEEECCCchhHHHHHHHHHhh
Q psy8556          40 VAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~~   60 (298)
                      |+|+|.+|+|||||+..+.+.
T Consensus         4 i~lvG~~~vGKTsLi~~~~~~   24 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGGV   24 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCcCHHHHHHHHhCC
Confidence            789999999999999998764

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.88  E-value=0.0054  Score=48.00  Aligned_cols=22  Identities=45%  Similarity=0.673  Sum_probs=19.5

Q ss_pred             eEEEEECCCchhHHHHHHHHHh
Q psy8556          38 TKVAILGPTASGKSSVALKISE   59 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~   59 (298)
                      .-|+|+|++|+|||||+..+..
T Consensus         5 ~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           5 RKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            3588999999999999999875

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.87  E-value=0.0057  Score=47.80  Aligned_cols=21  Identities=24%  Similarity=0.515  Sum_probs=19.0

Q ss_pred             EEEECCCchhHHHHHHHHHhh
Q psy8556          40 VAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~~   60 (298)
                      |+++|.+|+|||||+..+...
T Consensus         5 i~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998764

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.85  E-value=0.0068  Score=47.62  Aligned_cols=21  Identities=29%  Similarity=0.512  Sum_probs=19.0

Q ss_pred             EEEECCCchhHHHHHHHHHhh
Q psy8556          40 VAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~~   60 (298)
                      |+|+|++|+|||+|+..+...
T Consensus         5 i~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999999763

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.85  E-value=0.0069  Score=47.42  Aligned_cols=21  Identities=48%  Similarity=0.699  Sum_probs=19.0

Q ss_pred             EEEEECCCchhHHHHHHHHHh
Q psy8556          39 KVAILGPTASGKSSVALKISE   59 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~   59 (298)
                      -|+|+|.+|+|||||++.+..
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999999975

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.80  E-value=0.0062  Score=47.89  Aligned_cols=21  Identities=19%  Similarity=0.534  Sum_probs=19.0

Q ss_pred             EEEEECCCchhHHHHHHHHHh
Q psy8556          39 KVAILGPTASGKSSVALKISE   59 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~   59 (298)
                      -|+|+|.+|||||||+..+..
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            488999999999999998875

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.79  E-value=0.0061  Score=48.20  Aligned_cols=21  Identities=29%  Similarity=0.412  Sum_probs=18.8

Q ss_pred             EEEECCCchhHHHHHHHHHhh
Q psy8556          40 VAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~~   60 (298)
                      |+|+|.+|+|||||+..+...
T Consensus         5 ivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           5 LVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999998764

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.77  E-value=0.014  Score=52.91  Aligned_cols=39  Identities=15%  Similarity=0.320  Sum_probs=24.5

Q ss_pred             EEEECCCchhHHHHHHHHHhhC----------CCeEeecCCceEecccc
Q psy8556          40 VAILGPTASGKSSVALKISEYI----------PCEIISIDSALVYCDMD   78 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~~l----------~~~iis~Ds~qvy~g~~   78 (298)
                      ++|+||+|+|||+++..||..+          +..+++.|.+.+..|..
T Consensus        46 ~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~   94 (387)
T d1qvra2          46 PVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAK   94 (387)
T ss_dssp             CEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC--------
T ss_pred             CeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeHhhhhcccC
Confidence            4789999999999999998754          23566677666655443

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=94.71  E-value=0.0064  Score=48.49  Aligned_cols=23  Identities=22%  Similarity=0.465  Sum_probs=20.4

Q ss_pred             eEEEEECCCchhHHHHHHHHHhh
Q psy8556          38 TKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      --|+|+|.+.+|||||++.|.+.
T Consensus         6 inIaiiG~~naGKSTL~n~L~~~   28 (179)
T d1wb1a4           6 INLGIFGHIDHGKTTLSKVLTEI   28 (179)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTT
T ss_pred             EEEEEEeCCCCcHHHHHHHHHHh
Confidence            34999999999999999999753

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.71  E-value=0.0077  Score=47.12  Aligned_cols=20  Identities=40%  Similarity=0.665  Sum_probs=18.5

Q ss_pred             EEEECCCchhHHHHHHHHHh
Q psy8556          40 VAILGPTASGKSSVALKISE   59 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~   59 (298)
                      |+|+|.+|+|||||+..+..
T Consensus         6 ivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999999875

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.68  E-value=0.0076  Score=47.96  Aligned_cols=24  Identities=21%  Similarity=0.385  Sum_probs=20.6

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhh
Q psy8556          37 KTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      .--|+|+|.+|+|||||+..+.+.
T Consensus         5 ~iKivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           5 AIKCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            345899999999999999998754

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.68  E-value=0.0079  Score=47.37  Aligned_cols=20  Identities=35%  Similarity=0.449  Sum_probs=18.5

Q ss_pred             EEEECCCchhHHHHHHHHHh
Q psy8556          40 VAILGPTASGKSSVALKISE   59 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~   59 (298)
                      |+|+|++|||||||+..+..
T Consensus         9 I~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            88999999999999998875

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.67  E-value=0.0079  Score=47.18  Aligned_cols=22  Identities=41%  Similarity=0.620  Sum_probs=19.3

Q ss_pred             EEEEECCCchhHHHHHHHHHhh
Q psy8556          39 KVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      -|+|+|.+|+|||||+..+...
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999999743

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.66  E-value=0.008  Score=47.80  Aligned_cols=20  Identities=35%  Similarity=0.498  Sum_probs=18.6

Q ss_pred             EEEECCCchhHHHHHHHHHh
Q psy8556          40 VAILGPTASGKSSVALKISE   59 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~   59 (298)
                      |+|+|.+|||||||+..+..
T Consensus         5 v~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999999875

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.64  E-value=0.0071  Score=47.04  Aligned_cols=20  Identities=25%  Similarity=0.433  Sum_probs=18.6

Q ss_pred             EEEECCCchhHHHHHHHHHh
Q psy8556          40 VAILGPTASGKSSVALKISE   59 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~   59 (298)
                      |+|+|..|||||||++.+..
T Consensus         3 v~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999999875

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.57  E-value=0.0074  Score=47.47  Aligned_cols=20  Identities=25%  Similarity=0.471  Sum_probs=18.6

Q ss_pred             EEEECCCchhHHHHHHHHHh
Q psy8556          40 VAILGPTASGKSSVALKISE   59 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~   59 (298)
                      |+|+|..|||||||+..+..
T Consensus         8 I~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999999875

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.57  E-value=0.0089  Score=49.69  Aligned_cols=25  Identities=28%  Similarity=0.408  Sum_probs=22.1

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      +.++|+|+|...+|||||+..|.+.
T Consensus         4 r~p~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           4 RSPIVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCccHHHHHHHHHhh
Confidence            4567999999999999999999765

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.56  E-value=0.0076  Score=47.55  Aligned_cols=22  Identities=23%  Similarity=0.489  Sum_probs=19.4

Q ss_pred             EEEEECCCchhHHHHHHHHHhh
Q psy8556          39 KVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      -|+|+|.+|+|||||+..+...
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4889999999999999998753

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=94.49  E-value=0.0067  Score=48.11  Aligned_cols=25  Identities=20%  Similarity=0.477  Sum_probs=20.7

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHh
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISE   59 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~   59 (298)
                      ++.--|+|+|++|||||||+..+..
T Consensus        15 ~k~~KI~lvG~~~vGKTsLi~~l~~   39 (182)
T d1moza_          15 NKELRILILGLDGAGKTTILYRLQI   39 (182)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhc
Confidence            4455688999999999999998853

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.45  E-value=0.0095  Score=46.70  Aligned_cols=20  Identities=20%  Similarity=0.576  Sum_probs=18.5

Q ss_pred             EEEECCCchhHHHHHHHHHh
Q psy8556          40 VAILGPTASGKSSVALKISE   59 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~   59 (298)
                      |+|+|+.|+|||||+..+..
T Consensus         9 i~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999998865

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.44  E-value=0.0086  Score=47.24  Aligned_cols=21  Identities=29%  Similarity=0.438  Sum_probs=19.0

Q ss_pred             EEEECCCchhHHHHHHHHHhh
Q psy8556          40 VAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~~   60 (298)
                      |+|+|.+|+|||||+..+.+.
T Consensus         6 v~lvG~~~vGKTsLi~~~~~~   26 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAGV   26 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999999754

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.42  E-value=0.01  Score=46.71  Aligned_cols=22  Identities=23%  Similarity=0.484  Sum_probs=19.2

Q ss_pred             EEEEECCCchhHHHHHHHHHhh
Q psy8556          39 KVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      -|+++|.+|||||||+..+...
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~~   27 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQK   27 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3788999999999999998753

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.37  E-value=0.01  Score=46.45  Aligned_cols=22  Identities=41%  Similarity=0.650  Sum_probs=19.2

Q ss_pred             EEEEECCCchhHHHHHHHHHhh
Q psy8556          39 KVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      -|+|+|..|+|||||+..+...
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999988753

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.33  E-value=0.054  Score=46.41  Aligned_cols=26  Identities=38%  Similarity=0.544  Sum_probs=23.0

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      +.|.++-|.||+|||||||+..++..
T Consensus        58 ~~g~i~e~~G~~~~GKT~l~l~~~~~   83 (269)
T d1mo6a1          58 PRGRVIEIYGPESSGKTTVALHAVAN   83 (269)
T ss_dssp             CSSSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             ccceeEEEecCCCcHHHHHHHHHHHH
Confidence            67899999999999999999887654

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.32  E-value=0.009  Score=48.08  Aligned_cols=21  Identities=29%  Similarity=0.563  Sum_probs=19.0

Q ss_pred             EEEECCCchhHHHHHHHHHhh
Q psy8556          40 VAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~~   60 (298)
                      |+|+|+.|||||||+..+...
T Consensus         9 ivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhhC
Confidence            789999999999999998753

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.27  E-value=0.011  Score=46.16  Aligned_cols=22  Identities=27%  Similarity=0.517  Sum_probs=19.3

Q ss_pred             EEEEECCCchhHHHHHHHHHhh
Q psy8556          39 KVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      -|+|+|.+|+|||+|+..+...
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3789999999999999998754

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=94.26  E-value=0.011  Score=46.37  Aligned_cols=21  Identities=33%  Similarity=0.531  Sum_probs=18.8

Q ss_pred             EEEEECCCchhHHHHHHHHHh
Q psy8556          39 KVAILGPTASGKSSVALKISE   59 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~   59 (298)
                      -|+|+|.+|+|||||++.+..
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999999864

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.23  E-value=0.0054  Score=48.42  Aligned_cols=20  Identities=15%  Similarity=0.376  Sum_probs=17.5

Q ss_pred             EEEECCCchhHHHHHHHHHh
Q psy8556          40 VAILGPTASGKSSVALKISE   59 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~   59 (298)
                      |+|+|++|+|||||+..+..
T Consensus         6 i~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC-
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999988754

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.22  E-value=0.01  Score=47.33  Aligned_cols=19  Identities=37%  Similarity=0.600  Sum_probs=17.8

Q ss_pred             EEEEECCCchhHHHHHHHH
Q psy8556          39 KVAILGPTASGKSSVALKI   57 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~L   57 (298)
                      -|+|+|.+|||||||+..+
T Consensus         4 KivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4789999999999999999

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=94.19  E-value=0.0082  Score=47.25  Aligned_cols=26  Identities=23%  Similarity=0.425  Sum_probs=21.2

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      ++.--|+|+|+.|||||||+..+...
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~   35 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLG   35 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCC
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcC
Confidence            34445889999999999999998643

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.16  E-value=0.0094  Score=49.62  Aligned_cols=27  Identities=15%  Similarity=0.103  Sum_probs=23.2

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      +-++++|.|.=|||||||++.+.+...
T Consensus         2 ~iPv~iitGFLGaGKTTll~~lL~~~~   28 (222)
T d1nija1           2 PIAVTLLTGFLGAGKTTLLRHILNEQH   28 (222)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHSCC
T ss_pred             CCCEEEEeeCCCCCHHHHHHHHHhcCC
Confidence            347899999999999999999987643

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=94.11  E-value=0.013  Score=50.27  Aligned_cols=58  Identities=24%  Similarity=0.316  Sum_probs=38.6

Q ss_pred             hHHHHhhhcccCchhhhh------hcccccccccccc----------CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556           4 VKDVLDRDTETDPQQRQL------TADFRRIRTGKLL----------FRKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~----------~kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      .++++.+-+|.|+.++..      ..+..++++|...          +.+.++-|.||+|||||||+..++...
T Consensus         5 ~~~~~~~i~k~~g~~~~~~~~~~~~~~~~~isTG~~~lD~~Lg~GGi~~g~itei~G~~gsGKTtl~l~~~~~~   78 (263)
T d1u94a1           5 LAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA   78 (263)
T ss_dssp             HHHHHHHHHHHHCTTSSCCTTCCCBCCCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCcceEECCcccCCCCCeEccCCHHHHHHhcCCCccCceEEEEecCCCcHHHHHHHHHHHHH
Confidence            467777777777654421      1122234443311          567899999999999999998887654

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.04  E-value=0.013  Score=46.26  Aligned_cols=20  Identities=35%  Similarity=0.708  Sum_probs=18.7

Q ss_pred             EEEECCCchhHHHHHHHHHh
Q psy8556          40 VAILGPTASGKSSVALKISE   59 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~   59 (298)
                      |+|+|..|+|||||++.+..
T Consensus        10 i~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999999875

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.04  E-value=0.011  Score=46.97  Aligned_cols=21  Identities=14%  Similarity=0.403  Sum_probs=18.7

Q ss_pred             EEEECCCchhHHHHHHHHHhh
Q psy8556          40 VAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~~   60 (298)
                      |+|+|.+|+|||+|+..+...
T Consensus         5 ivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999988753

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.03  E-value=0.0073  Score=47.62  Aligned_cols=20  Identities=30%  Similarity=0.637  Sum_probs=8.5

Q ss_pred             EEEECCCchhHHHHHHHHHh
Q psy8556          40 VAILGPTASGKSSVALKISE   59 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~   59 (298)
                      |+|+|.+|||||||+..+.+
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEECCCCC-----------
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998875

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=94.01  E-value=0.019  Score=48.54  Aligned_cols=36  Identities=17%  Similarity=0.159  Sum_probs=28.3

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHhhC-----CCeEeecC
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISEYI-----PCEIISID   69 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l-----~~~iis~D   69 (298)
                      ...+++|+++|--|+||||++..||..+     ..-+|++|
T Consensus         5 ~~~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~D   45 (296)
T d1ihua1           5 QNIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD   45 (296)
T ss_dssp             SSCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCCCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence            3457899999999999999888888766     23467777

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.96  E-value=0.012  Score=46.92  Aligned_cols=22  Identities=23%  Similarity=0.422  Sum_probs=19.3

Q ss_pred             EEEEECCCchhHHHHHHHHHhh
Q psy8556          39 KVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      -|+|+|.+|+|||||+..+...
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            3889999999999999998753

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.90  E-value=0.012  Score=47.06  Aligned_cols=22  Identities=23%  Similarity=0.434  Sum_probs=19.1

Q ss_pred             EEEEECCCchhHHHHHHHHHhh
Q psy8556          39 KVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      -|+|+|.+|+|||+|+..+...
T Consensus         5 KvvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999988753

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.77  E-value=0.014  Score=48.25  Aligned_cols=21  Identities=29%  Similarity=0.537  Sum_probs=18.6

Q ss_pred             EEEEECCCchhHHHHHHHHHh
Q psy8556          39 KVAILGPTASGKSSVALKISE   59 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~   59 (298)
                      -|+|+|.+|||||||++.+..
T Consensus         8 KilllG~~~vGKTsll~~~~~   28 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMRI   28 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            478999999999999999853

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.76  E-value=0.017  Score=45.89  Aligned_cols=23  Identities=30%  Similarity=0.432  Sum_probs=19.9

Q ss_pred             eEEEEECCCchhHHHHHHHHHhh
Q psy8556          38 TKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      --|+++|.+|+|||||+..+...
T Consensus         6 ~ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           6 LRLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            35899999999999999988764

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.68  E-value=0.013  Score=50.53  Aligned_cols=26  Identities=31%  Similarity=0.273  Sum_probs=22.5

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      +--+|+|+||.+||||||++.|.+..
T Consensus        31 ~v~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          31 PMVVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             CEEEEEEECCCCCCHHHHHHHHcCCC
Confidence            34589999999999999999998754

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.43  E-value=0.094  Score=42.45  Aligned_cols=86  Identities=17%  Similarity=0.164  Sum_probs=52.6

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccC-cCccchH-------
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIE-PTKSYSV-------  108 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~-~~e~~s~-------  108 (298)
                      +..|+|+||   ||+|+.+.|.+.++      +.  +....+.+|..|...|..++.+|++...+ +......       
T Consensus         9 ~Rpivi~Gp---~K~ti~~~L~~~~p------~~--f~~~is~TTR~~R~~E~dG~dY~Fv~~~e~F~~~i~~~~fiE~~   77 (199)
T d1kjwa2           9 ARPIIILGP---TKDRANDDLLSEFP------DK--FGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAG   77 (199)
T ss_dssp             CCCEEEEST---THHHHHHHHHHHCT------TT--EECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEE
T ss_pred             CCCEEEECc---CHHHHHHHHHHhCc------cc--eeecccccccCCCCCCCCCcccchhhhHHHHHHHHhhccceeee
Confidence            455788898   59999999998875      22  22345667888888898999888763221 1100000       


Q ss_pred             ---HHHHHHHHHhhHHHhhcCCceEEEc
Q psy8556         109 ---IQFCEDALFSIKNILKKKKLPLLVG  133 (298)
Q Consensus       109 ---~~f~~~~~~~i~~i~~~~~~~IlvG  133 (298)
                         +.++......+......|+.+++..
T Consensus        78 ~~~g~~YGt~~~~i~~~~~~gk~~lldi  105 (199)
T d1kjwa2          78 QYNSHLYGTSVQSVREVAEQGKHCILDV  105 (199)
T ss_dssp             EETTEEEEEEHHHHHHHHHTTCEEEECC
T ss_pred             eecCCccceeeeEEEehhcCCCcccccc
Confidence               0011112345566777888887753

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.39  E-value=0.021  Score=43.22  Aligned_cols=28  Identities=0%  Similarity=0.029  Sum_probs=23.9

Q ss_pred             cCCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          34 LFRKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      ++.|-.|.+.|-+||||||+|+.|...+
T Consensus         3 ~kqgf~i~~tg~~~~gk~~ia~al~~~l   30 (122)
T d1g8fa3           3 PKQGFSIVLGNSLTVSREQLSIALLSTF   30 (122)
T ss_dssp             GGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred             CccceEEEEeCCCCCCHHHHHHHHHHHH
Confidence            3567789999999999999999996554

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.39  E-value=0.016  Score=52.56  Aligned_cols=25  Identities=36%  Similarity=0.377  Sum_probs=21.6

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      .+--|+|+|.||+|||||.+.|.+.
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~   79 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGI   79 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            3456999999999999999999763

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.34  E-value=0.018  Score=45.59  Aligned_cols=23  Identities=30%  Similarity=0.397  Sum_probs=20.0

Q ss_pred             EEEEECCCchhHHHHHHHHHhhC
Q psy8556          39 KVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      -|+|+|.+|||||+|+..+....
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~~   26 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRIIH   26 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            37899999999999999997653

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.07  E-value=0.021  Score=44.87  Aligned_cols=21  Identities=33%  Similarity=0.550  Sum_probs=18.6

Q ss_pred             EEEEECCCchhHHHHHHHHHh
Q psy8556          39 KVAILGPTASGKSSVALKISE   59 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~   59 (298)
                      -|+|+|..|+|||+|++.+..
T Consensus         4 KivllG~~~vGKTsl~~r~~~   24 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKI   24 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            378999999999999999864

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=92.65  E-value=0.03  Score=44.63  Aligned_cols=20  Identities=40%  Similarity=0.559  Sum_probs=15.8

Q ss_pred             EEEECCCchhHHHHHHHHHh
Q psy8556          40 VAILGPTASGKSSVALKISE   59 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~   59 (298)
                      ..|++|||||||.++..++.
T Consensus        26 ~lv~~pTGsGKT~i~~~~~~   45 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIAMMIAE   45 (200)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEeCCCCcHHHHHHHHHH
Confidence            45889999999987666654

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=92.62  E-value=0.023  Score=51.05  Aligned_cols=20  Identities=25%  Similarity=0.400  Sum_probs=17.0

Q ss_pred             EEEECCCchhHHHHHHHHHh
Q psy8556          40 VAILGPTASGKSSVALKISE   59 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~   59 (298)
                      +.|+|+||||||+++..+..
T Consensus        53 ~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          53 LLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHH
Confidence            78999999999999876543

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=92.57  E-value=0.03  Score=48.60  Aligned_cols=27  Identities=26%  Similarity=0.370  Sum_probs=23.5

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      -+|+.++|+|++|+|||+|+..++...
T Consensus        41 grGQr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          41 GRGQRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             BTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             cCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence            457789999999999999999998754

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=92.56  E-value=0.028  Score=48.19  Aligned_cols=27  Identities=33%  Similarity=0.473  Sum_probs=23.7

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      +.|.++-|.||+|||||+|+..++...
T Consensus        55 p~g~itei~G~~~sGKT~l~l~~~~~a   81 (268)
T d1xp8a1          55 PRGRITEIYGPESGGKTTLALAIVAQA   81 (268)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCceEEEEecCCccchHHHHHHHHHHH
Confidence            567899999999999999998887653

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.09  E-value=0.053  Score=41.36  Aligned_cols=26  Identities=35%  Similarity=0.433  Sum_probs=22.0

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      +|.+-+|+||-.|||||-+...+..+
T Consensus         1 ~G~L~li~GpMfsGKTt~Li~~~~~~   26 (133)
T d1xbta1           1 RGQIQVILGPMFSGKSTELMRRVRRF   26 (133)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEEEecccCHHHHHHHHHHHHH
Confidence            57789999999999999888776554

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=92.07  E-value=0.033  Score=49.32  Aligned_cols=26  Identities=15%  Similarity=0.171  Sum_probs=23.1

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      .-.|.|-|+-||||||+++.|++.++
T Consensus         6 ~~rI~iEG~iGsGKSTl~~~L~~~l~   31 (333)
T d1p6xa_           6 IVRIYLDGVYGIGKSTTGRVMASAAS   31 (333)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred             eEEEEEECCccCCHHHHHHHHHHHhc
Confidence            45789999999999999999998774

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=91.99  E-value=0.044  Score=44.70  Aligned_cols=23  Identities=17%  Similarity=0.367  Sum_probs=20.0

Q ss_pred             EEEEECCCchhHHHHHHHHHhhC
Q psy8556          39 KVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      -|+|+|..++|||||+..|....
T Consensus         5 ni~iiGhvd~GKSTL~~~Ll~~~   27 (204)
T d2c78a3           5 NVGTIGHVDHGKTTLTAALTYVA   27 (204)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHh
Confidence            39999999999999999996543

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=91.91  E-value=0.029  Score=49.60  Aligned_cols=25  Identities=24%  Similarity=0.308  Sum_probs=20.3

Q ss_pred             eEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          38 TKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      ..|+|-|+-||||||+++.|++.++
T Consensus         5 lrI~IEG~iGsGKTTl~~~La~~l~   29 (329)
T d1e2ka_           5 LRVYIDGPHGMGKTTTTQLLVALGS   29 (329)
T ss_dssp             EEEEECSCTTSSHHHHHHHHTC---
T ss_pred             eEEEEECCcCCCHHHHHHHHHHHhC
Confidence            4589999999999999999988765

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=91.83  E-value=0.056  Score=46.16  Aligned_cols=28  Identities=25%  Similarity=0.605  Sum_probs=25.4

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      ++...+.|.||.++|||+++..|+..++
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~~lg  129 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAHTVP  129 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            5567899999999999999999999985

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=91.80  E-value=0.036  Score=44.34  Aligned_cols=24  Identities=17%  Similarity=0.257  Sum_probs=20.9

Q ss_pred             eEEEEECC-CchhHHHHHHHHHhhC
Q psy8556          38 TKVAILGP-TASGKSSVALKISEYI   61 (298)
Q Consensus        38 ~iI~I~Gp-TGSGKSTLa~~La~~l   61 (298)
                      +.+.|+|. ||+||||++..||..+
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aL   26 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAA   26 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHH
Confidence            46889999 4999999999998876

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.70  E-value=0.043  Score=44.15  Aligned_cols=34  Identities=29%  Similarity=0.365  Sum_probs=22.4

Q ss_pred             ccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHH
Q psy8556          13 ETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVAL   55 (298)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~   55 (298)
                      +-||-|...+..+.   .+      .-++|.+|||||||+.+.
T Consensus        25 ~l~~~Q~~ai~~l~---~~------~~~il~apTGsGKT~~a~   58 (202)
T d2p6ra3          25 ELFPPQAEAVEKVF---SG------KNLLLAMPTAAGKTLLAE   58 (202)
T ss_dssp             CCCCCCHHHHHHHT---TC------SCEEEECSSHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHH---cC------CCEEEEcCCCCchhHHHH
Confidence            35577766554432   12      226799999999998763

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.38  E-value=0.067  Score=43.42  Aligned_cols=25  Identities=28%  Similarity=0.417  Sum_probs=22.5

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      +.-+.+.||+|+|||+++..++...
T Consensus        15 ~~~~l~~G~~g~gk~~~a~~l~~~i   39 (198)
T d2gnoa2          15 GISILINGEDLSYPREVSLELPEYV   39 (198)
T ss_dssp             SEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHH
Confidence            5678999999999999999999865

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=91.29  E-value=0.028  Score=49.72  Aligned_cols=26  Identities=15%  Similarity=0.197  Sum_probs=23.2

Q ss_pred             CeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          37 KTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      ...|+|=|+=||||||+++.|++.++
T Consensus         5 ~lrI~IEG~iGsGKSTl~~~L~~~l~   30 (331)
T d1osna_           5 VLRIYLDGAYGIGKTTAAEEFLHHFA   30 (331)
T ss_dssp             EEEEEEEESSSSCTTHHHHHHHHTTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence            34699999999999999999998875

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=91.03  E-value=0.042  Score=46.49  Aligned_cols=20  Identities=15%  Similarity=0.177  Sum_probs=17.3

Q ss_pred             ccCCCeEEEEECCCchhHHH
Q psy8556          33 LLFRKTKVAILGPTASGKSS   52 (298)
Q Consensus        33 ~~~kg~iI~I~GpTGSGKST   52 (298)
                      +-.+++.+.|.+|||||||+
T Consensus         5 ~~~~~~~~lv~~~TGsGKT~   24 (305)
T d2bmfa2           5 IFRKKRLTIMDLHPGAGKTK   24 (305)
T ss_dssp             SSSTTCEEEECCCTTSSTTT
T ss_pred             HhhcCCcEEEEECCCCCHHH
Confidence            44678889999999999996

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=90.98  E-value=0.056  Score=48.14  Aligned_cols=21  Identities=24%  Similarity=0.417  Sum_probs=17.8

Q ss_pred             CeEEEEECCCchhHHHHHHHH
Q psy8556          37 KTKVAILGPTASGKSSVALKI   57 (298)
Q Consensus        37 g~iI~I~GpTGSGKSTLa~~L   57 (298)
                      ..+.+|.||.|+||||++..+
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHH
Confidence            458999999999999987554

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=90.86  E-value=0.06  Score=45.26  Aligned_cols=22  Identities=36%  Similarity=0.391  Sum_probs=19.8

Q ss_pred             EEEECCCchhHHHHHHHHHhhC
Q psy8556          40 VAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~~l   61 (298)
                      |.|.|++|+||+++|+.|....
T Consensus        26 vlI~Ge~GtGK~~~A~~ih~~s   47 (247)
T d1ny5a2          26 VLITGESGVGKEVVARLIHKLS   47 (247)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHHhc
Confidence            7899999999999999997654

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=90.66  E-value=0.069  Score=44.69  Aligned_cols=32  Identities=25%  Similarity=0.390  Sum_probs=25.3

Q ss_pred             eEEEEECCCchhHHHHHHHHHhhCC-----CeEeecC
Q psy8556          38 TKVAILGPTASGKSSVALKISEYIP-----CEIISID   69 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~l~-----~~iis~D   69 (298)
                      +.|+|.|--|+||||++..||..+-     .-+|.+|
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D   38 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCD   38 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecC
Confidence            4689999999999999998887652     3456666

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.63  E-value=0.051  Score=46.35  Aligned_cols=22  Identities=32%  Similarity=0.469  Sum_probs=19.7

Q ss_pred             EEEEECCCchhHHHHHHHHHhh
Q psy8556          39 KVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      -|+|+|...||||||++.|.+.
T Consensus        28 ~ivvvG~~SsGKSsliNaLlg~   49 (299)
T d2akab1          28 QIAVVGGQSAGKSSVLENFVGR   49 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTS
T ss_pred             eEEEEcCCCCCHHHHHHHHhCC
Confidence            4779999999999999999863

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=90.53  E-value=0.032  Score=46.10  Aligned_cols=21  Identities=38%  Similarity=0.523  Sum_probs=16.5

Q ss_pred             eEEEEECCCchhHHHHHHHHH
Q psy8556          38 TKVAILGPTASGKSSVALKIS   58 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La   58 (298)
                      +=++|++|||||||+.+...+
T Consensus        59 ~~~~i~apTGsGKT~~~~~~~   79 (237)
T d1gkub1          59 ESFAATAPTGVGKTSFGLAMS   79 (237)
T ss_dssp             CCEECCCCBTSCSHHHHHHHH
T ss_pred             CCEEEEecCCChHHHHHHHHH
Confidence            347899999999998765554

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=90.38  E-value=0.061  Score=47.02  Aligned_cols=24  Identities=13%  Similarity=0.270  Sum_probs=19.9

Q ss_pred             ccCCCeEEEEECCCchhHHHHHHH
Q psy8556          33 LLFRKTKVAILGPTASGKSSVALK   56 (298)
Q Consensus        33 ~~~kg~iI~I~GpTGSGKSTLa~~   56 (298)
                      ..+++.+-++.|.||+|||||+..
T Consensus        10 ~~~~~~~alfFGLSGTGKTTLs~d   33 (313)
T d2olra1          10 VGEKGDVAVFFGLSGTGKTTLSTD   33 (313)
T ss_dssp             ECTTSCEEEEECSTTSSHHHHHCC
T ss_pred             cCCCCCEEEEEccCCCCcccceeC
Confidence            345678899999999999998743

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=90.37  E-value=0.073  Score=45.57  Aligned_cols=23  Identities=35%  Similarity=0.505  Sum_probs=20.3

Q ss_pred             eEEEEECCCchhHHHHHHHHHhh
Q psy8556          38 TKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      +-|+|+|...||||||++.|.+.
T Consensus        25 P~ivVvG~~ssGKSSliNaLlG~   47 (306)
T d1jwyb_          25 PQIVVVGSQSSGKSSVLENIVGR   47 (306)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHTS
T ss_pred             CeEEEEeCCCCCHHHHHHHHhCC
Confidence            35789999999999999999864

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=90.27  E-value=0.08  Score=44.31  Aligned_cols=27  Identities=19%  Similarity=0.329  Sum_probs=22.6

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      ...++|++.|--|+||||++..||..+
T Consensus        18 ~~~~iii~sGKGGVGKTT~a~nLA~~l   44 (279)
T d1ihua2          18 NEHGLIMLMGKGGVGKTTMAAAIAVRL   44 (279)
T ss_dssp             TSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            445789999999999999988887665

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=90.19  E-value=0.11  Score=41.92  Aligned_cols=24  Identities=33%  Similarity=0.404  Sum_probs=20.1

Q ss_pred             EEEECCCchhHHHHHHHHHhhCCC
Q psy8556          40 VAILGPTASGKSSVALKISEYIPC   63 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~~l~~   63 (298)
                      .+|+.|||+|||-++..++..++.
T Consensus        88 ~ll~~~tG~GKT~~a~~~~~~~~~  111 (206)
T d2fz4a1          88 GCIVLPTGSGKTHVAMAAINELST  111 (206)
T ss_dssp             EEEEESSSTTHHHHHHHHHHHSCS
T ss_pred             cEEEeCCCCCceehHHhHHHHhcC
Confidence            457889999999999888887763

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=89.81  E-value=0.097  Score=42.20  Aligned_cols=26  Identities=15%  Similarity=0.386  Sum_probs=21.6

Q ss_pred             CCe-EEEEECCCchhHHHHHHHHHhhC
Q psy8556          36 RKT-KVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        36 kg~-iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      +|. -|+|+|.-.+|||||+..|.+..
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~~~   32 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITGIW   32 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHSCC
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHhhh
Confidence            444 49999999999999999997644

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=89.69  E-value=0.063  Score=45.27  Aligned_cols=17  Identities=29%  Similarity=0.419  Sum_probs=13.8

Q ss_pred             EEEECCCchhHHHHHHH
Q psy8556          40 VAILGPTASGKSSVALK   56 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~   56 (298)
                      +.|.|+.||||||++..
T Consensus        17 ~lI~g~aGTGKTt~l~~   33 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVITN   33 (306)
T ss_dssp             EEECCCTTSCHHHHHHH
T ss_pred             EEEEeeCCccHHHHHHH
Confidence            56889999999987543

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=89.64  E-value=0.07  Score=45.81  Aligned_cols=24  Identities=21%  Similarity=0.367  Sum_probs=20.4

Q ss_pred             eEEEEECCCchhHHHHHHHHHhhC
Q psy8556          38 TKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      +-|+|+|..|||||||+-.|.-..
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll~~~   30 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERILYYT   30 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhc
Confidence            359999999999999999996543

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.55  E-value=0.093  Score=42.44  Aligned_cols=25  Identities=24%  Similarity=0.449  Sum_probs=21.3

Q ss_pred             CeEEEEE-CCCchhHHHHHHHHHhhC
Q psy8556          37 KTKVAIL-GPTASGKSSVALKISEYI   61 (298)
Q Consensus        37 g~iI~I~-GpTGSGKSTLa~~La~~l   61 (298)
                      +++|+|+ +-.|+||||++..||..+
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~l   27 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVAL   27 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHH
Confidence            5788888 668999999999998765

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.44  E-value=0.098  Score=44.90  Aligned_cols=26  Identities=15%  Similarity=0.395  Sum_probs=23.2

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      -+|+.++|.|++|+|||+|+..++..
T Consensus        66 gkGQr~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          66 AKGGKIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             ETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence            56778999999999999999999765

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=89.12  E-value=0.072  Score=45.42  Aligned_cols=17  Identities=29%  Similarity=0.436  Sum_probs=13.8

Q ss_pred             EEEECCCchhHHHHHHH
Q psy8556          40 VAILGPTASGKSSVALK   56 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~   56 (298)
                      +.|.|+.||||||++..
T Consensus        27 ~lV~g~aGSGKTt~l~~   43 (318)
T d1pjra1          27 LLIMAGAGSGKTRVLTH   43 (318)
T ss_dssp             EEEEECTTSCHHHHHHH
T ss_pred             EEEEecCCccHHHHHHH
Confidence            56889999999987654

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=88.98  E-value=0.091  Score=46.05  Aligned_cols=25  Identities=12%  Similarity=0.262  Sum_probs=20.5

Q ss_pred             cccCCCeEEEEECCCchhHHHHHHH
Q psy8556          32 KLLFRKTKVAILGPTASGKSSVALK   56 (298)
Q Consensus        32 ~~~~kg~iI~I~GpTGSGKSTLa~~   56 (298)
                      ...+++.+-++.|-||+|||||+..
T Consensus         9 n~~~~gd~alfFGLSGTGKTTLs~d   33 (323)
T d1ii2a1           9 NVGKQGDVTVFFGLSGTGKTTLSAD   33 (323)
T ss_dssp             EECTTCCEEEEECCTTSSHHHHHCC
T ss_pred             ccCCCCCEEEEEccCCCCcccceeC
Confidence            3445678889999999999999843

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=88.79  E-value=0.12  Score=44.08  Aligned_cols=24  Identities=25%  Similarity=0.349  Sum_probs=20.5

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCC
Q psy8556          39 KVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      -|+|+|..|+|||||+..|...-+
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g   27 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTG   27 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcC
Confidence            489999999999999999965443

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=88.45  E-value=0.076  Score=46.50  Aligned_cols=25  Identities=12%  Similarity=0.247  Sum_probs=20.3

Q ss_pred             cccCCCeEEEEECCCchhHHHHHHH
Q psy8556          32 KLLFRKTKVAILGPTASGKSSVALK   56 (298)
Q Consensus        32 ~~~~kg~iI~I~GpTGSGKSTLa~~   56 (298)
                      ...+++.+-++.|.||+|||||+..
T Consensus         9 n~~~~~~valffGLSGTGKTTLs~~   33 (318)
T d1j3ba1           9 NVGKEGDVAVFFGLSGTGKTTLSTD   33 (318)
T ss_dssp             EECTTCCEEEEEECTTSCHHHHTCB
T ss_pred             ccCCCCCEEEEEccCCCCccccccC
Confidence            3445678899999999999998754

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=88.31  E-value=0.12  Score=49.85  Aligned_cols=27  Identities=26%  Similarity=0.439  Sum_probs=23.0

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      .+.+.|+|.|.||||||+-++.+.+.+
T Consensus        84 ~~~QsIiisGeSGsGKTe~~k~il~yL  110 (684)
T d1lkxa_          84 QENQCVIISGESGAGKTEASKKIMQFL  110 (684)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            456889999999999999999886644

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=88.17  E-value=0.16  Score=40.98  Aligned_cols=22  Identities=23%  Similarity=0.508  Sum_probs=19.7

Q ss_pred             EEEECCCchhHHHHHHHHHhhC
Q psy8556          40 VAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~~l   61 (298)
                      |+|+|--.+|||||+..|.+.+
T Consensus         6 i~iiGHvd~GKSTL~~~l~~~~   27 (196)
T d1d2ea3           6 VGTIGHVDHGKTTLTAAITKIL   27 (196)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHHHH
Confidence            9999999999999999987643

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=87.97  E-value=0.13  Score=41.04  Aligned_cols=22  Identities=14%  Similarity=0.398  Sum_probs=19.6

Q ss_pred             EEEECCCchhHHHHHHHHHhhC
Q psy8556          40 VAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~~l   61 (298)
                      |+|+|.-.+|||||+..|.+..
T Consensus         8 IaiiGhvd~GKSTL~~~L~g~~   29 (195)
T d1kk1a3           8 IGMVGHVDHGKTTLTKALTGVW   29 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEeccCCcHHHHHHHHHhhh
Confidence            7999999999999999997643

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=87.56  E-value=0.14  Score=49.57  Aligned_cols=27  Identities=22%  Similarity=0.449  Sum_probs=23.4

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      .+.+.|+|.|.||||||.-++.+.+.+
T Consensus       123 ~~nQsIiisGeSGaGKTe~~k~il~yL  149 (712)
T d1d0xa2         123 RQNQSLLITGESGAGKTENTKKVIQYL  149 (712)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence            457899999999999999999887654

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=87.55  E-value=0.14  Score=49.52  Aligned_cols=27  Identities=19%  Similarity=0.385  Sum_probs=23.7

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      ++.+.|+|.|.||||||+-++.+.+.+
T Consensus        89 ~~~Q~IiisGeSGaGKTe~~k~il~yL  115 (710)
T d1br2a2          89 REDQSILCTGESGAGKTENTKKVIQYL  115 (710)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            557889999999999999999887765

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=87.36  E-value=0.17  Score=40.54  Aligned_cols=23  Identities=26%  Similarity=0.221  Sum_probs=19.9

Q ss_pred             EEEEECCCchhHHHHHHHHHhhC
Q psy8556          39 KVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      ++.|+|++.||||.+|..|+...
T Consensus         1 iiLVtGGarSGKS~~AE~l~~~~   23 (180)
T d1c9ka_           1 MILVTGGARSGKSRHAEALIGDA   23 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCSC
T ss_pred             CEEEECCCCccHHHHHHHHHhcC
Confidence            47899999999999999997543

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=86.67  E-value=0.17  Score=41.44  Aligned_cols=21  Identities=19%  Similarity=0.343  Sum_probs=18.6

Q ss_pred             EEEECCCchhHHHHHHHHHhh
Q psy8556          40 VAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~~   60 (298)
                      |+|+|--++|||||+..|.-.
T Consensus         6 i~viGHVd~GKTTL~~~Ll~~   26 (224)
T d1jnya3           6 LIVIGHVDHGKSTLVGRLLMD   26 (224)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEecCCCCHHHHHHHHHHH
Confidence            899999999999999888543

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=86.61  E-value=0.15  Score=49.94  Aligned_cols=27  Identities=19%  Similarity=0.409  Sum_probs=22.8

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      .+.+.|+|.|.||||||+-++.+.+.+
T Consensus       121 ~~~QsIiisGeSGaGKTe~~K~il~yL  147 (794)
T d2mysa2         121 RENQSILITGESGAGKTVNTKRVIQYF  147 (794)
T ss_dssp             TCCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            557889999999999999888776654

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=86.50  E-value=0.15  Score=43.64  Aligned_cols=23  Identities=30%  Similarity=0.359  Sum_probs=20.4

Q ss_pred             eEEEEECCCchhHHHHHHHHHhh
Q psy8556          38 TKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      .-++|+|-+-||||||.+.|.+.
T Consensus        11 ~kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1          11 LKTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHCC
Confidence            35999999999999999999753

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=86.32  E-value=0.18  Score=48.88  Aligned_cols=27  Identities=22%  Similarity=0.356  Sum_probs=23.4

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      .+++.|+|.|.||||||.-++.+.+.+
T Consensus        92 ~~~Q~IiisGeSGsGKTe~~k~il~~l  118 (730)
T d1w7ja2          92 ERNQSIIVSGESGAGKTVSAKYAMRYF  118 (730)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            457889999999999999999887754

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=86.16  E-value=0.14  Score=43.93  Aligned_cols=21  Identities=19%  Similarity=0.301  Sum_probs=18.9

Q ss_pred             EEEECCCchhHHHHHHHHHhh
Q psy8556          40 VAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~~   60 (298)
                      |+|+|-+-||||||.+.|.+.
T Consensus         3 v~lvG~pn~GKStlfn~lt~~   23 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAATLV   23 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHHC-
T ss_pred             EeEECCCCCCHHHHHHHHHCC
Confidence            899999999999999999654

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.77  E-value=0.2  Score=40.28  Aligned_cols=24  Identities=13%  Similarity=0.423  Sum_probs=19.6

Q ss_pred             eEEEEE-CCCchhHHHHHHHHHhhC
Q psy8556          38 TKVAIL-GPTASGKSSVALKISEYI   61 (298)
Q Consensus        38 ~iI~I~-GpTGSGKSTLa~~La~~l   61 (298)
                      ++|+|+ |--|+||||++..||..+
T Consensus         2 kvIav~s~KGGvGKTtia~nlA~~l   26 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANLGVAL   26 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCChHHHHHHHHHHHH
Confidence            456666 888999999999888765

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=85.63  E-value=0.18  Score=49.38  Aligned_cols=27  Identities=22%  Similarity=0.368  Sum_probs=22.8

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      .+.+.|+|.|.||||||.-++.+.+.+
T Consensus       119 ~~nQ~IiisGESGaGKTe~~K~il~yL  145 (789)
T d1kk8a2         119 RENQSCLITGESGAGKTENTKKVIMYL  145 (789)
T ss_dssp             TSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            456889999999999999988877654

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=84.59  E-value=0.22  Score=42.01  Aligned_cols=32  Identities=25%  Similarity=0.361  Sum_probs=23.7

Q ss_pred             eEEEEECCCchhHHHHHHHHHhhC---C--CeEeecC
Q psy8556          38 TKVAILGPTASGKSSVALKISEYI---P--CEIISID   69 (298)
Q Consensus        38 ~iI~I~GpTGSGKSTLa~~La~~l---~--~~iis~D   69 (298)
                      +.|+|.|--|+||||++..||..+   +  .-+|.+|
T Consensus         3 r~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~D   39 (289)
T d2afhe1           3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCD   39 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecC
Confidence            467889999999999888876654   2  3345565

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=84.09  E-value=0.27  Score=41.53  Aligned_cols=22  Identities=27%  Similarity=0.388  Sum_probs=20.1

Q ss_pred             EEEEECCCchhHHHHHHHHHhh
Q psy8556          39 KVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      -++|+|-+-||||||.+.|.+.
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHCC
Confidence            5899999999999999999764

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=82.17  E-value=0.37  Score=40.52  Aligned_cols=28  Identities=21%  Similarity=0.335  Sum_probs=23.8

Q ss_pred             ccCCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          33 LLFRKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        33 ~~~kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      ...++..++|+|-+-+|||||++.|.+.
T Consensus       108 ~~~~~~~v~vvG~PNvGKSsliN~L~~~  135 (273)
T d1puja_         108 VKPRAIRALIIGIPNVGKSTLINRLAKK  135 (273)
T ss_dssp             CCCCCEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCCceEEEEEecCccchhhhhhhhhcc
Confidence            3355677999999999999999999875

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=82.07  E-value=0.27  Score=40.92  Aligned_cols=31  Identities=16%  Similarity=0.129  Sum_probs=23.4

Q ss_pred             cccccCCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          30 TGKLLFRKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        30 ~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      .....+++....|.|.+|||||-++...+..
T Consensus        69 ~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~   99 (233)
T d2eyqa3          69 SDMCQPLAMDRLVCGDVGFGKTEVAMRAAFL   99 (233)
T ss_dssp             HHHHSSSCCEEEEECCCCTTTHHHHHHHHHH
T ss_pred             HHHhccCccCeEEEcCCCCCcHHHHHHHHHH
Confidence            3344455667899999999999998777643

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=81.97  E-value=0.4  Score=39.84  Aligned_cols=27  Identities=19%  Similarity=0.288  Sum_probs=21.7

Q ss_pred             CCeE-EEEECCCchhHHHHHHHHHhhCC
Q psy8556          36 RKTK-VAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        36 kg~i-I~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      |+.+ |+|+|--++|||||+..|.-..+
T Consensus        22 k~~iNi~iiGHVD~GKSTL~~~Ll~~~g   49 (245)
T d1r5ba3          22 KEHVNIVFIGHVDAGKSTLGGNILFLTG   49 (245)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTT
T ss_pred             CCceEEEEEeeCCCCHHHHHHHHHHHcC
Confidence            3444 99999999999999999965544

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=81.96  E-value=0.48  Score=36.16  Aligned_cols=27  Identities=26%  Similarity=0.194  Sum_probs=22.6

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEYI   61 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~l   61 (298)
                      ..|.+-+|+||--|||||-+...+..+
T Consensus         5 ~~G~l~lI~GpMfSGKTteLi~~~~~~   31 (141)
T d1xx6a1           5 DHGWVEVIVGPMYSGKSEELIRRIRRA   31 (141)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cceeEEEEEeccccHHHHHHHHHHHHh
Confidence            357889999999999999988877654

>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecQ helicase domain
species: Escherichia coli [TaxId: 562]

Probab=81.47  E-value=0.61  Score=36.85  Aligned_cols=20  Identities=25%  Similarity=0.184  Sum_probs=15.5

Q ss_pred             EEEECCCchhHHHHHHHHHh
Q psy8556          40 VAILGPTASGKSSVALKISE   59 (298)
Q Consensus        40 I~I~GpTGSGKSTLa~~La~   59 (298)
                      +.++-|||||||..+....-
T Consensus        43 vlv~apTGsGKT~~~~~~~~   62 (206)
T d1oywa2          43 CLVVMPTGGGKSLCYQIPAL   62 (206)
T ss_dssp             EEEECSCHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCCcchhhhhhh
Confidence            67889999999987655443

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=80.70  E-value=0.32  Score=41.69  Aligned_cols=26  Identities=27%  Similarity=0.355  Sum_probs=22.1

Q ss_pred             CCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556          35 FRKTKVAILGPTASGKSSVALKISEY   60 (298)
Q Consensus        35 ~kg~iI~I~GpTGSGKSTLa~~La~~   60 (298)
                      -+|+.++|.|+.|+|||+|+..++..
T Consensus        66 g~GQr~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          66 GRGQRELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             BTTCBCEEEESTTSSHHHHHHHHHHH
T ss_pred             cCCCEEEeecCCCCChHHHHHHHHHh
Confidence            56778999999999999998877654

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=80.70  E-value=0.43  Score=36.89  Aligned_cols=19  Identities=37%  Similarity=0.639  Sum_probs=16.2

Q ss_pred             CCeEEEEECCCch-hHHHHH
Q psy8556          36 RKTKVAILGPTAS-GKSSVA   54 (298)
Q Consensus        36 kg~iI~I~GpTGS-GKSTLa   54 (298)
                      +|+-|+|+|.||| |++||-
T Consensus         1 ~pK~I~IlGsTGSIG~~tL~   20 (150)
T d1r0ka2           1 QPRTVTVLGATGSIGHSTLD   20 (150)
T ss_dssp             CCEEEEEETTTSHHHHHHHH
T ss_pred             CCcEEEEECCCcHHHHHHHH
Confidence            3678999999998 988883

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=80.56  E-value=0.51  Score=38.62  Aligned_cols=24  Identities=17%  Similarity=0.198  Sum_probs=20.9

Q ss_pred             EEEEECCCchhHHHHHHHHHhhCC
Q psy8556          39 KVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        39 iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      -|+++|--.+|||||+..|....+
T Consensus        11 ~i~viGHVd~GKSTL~~~Ll~~~g   34 (222)
T d1zunb3          11 RFLTCGNVDDGKSTLIGRLLHDSK   34 (222)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHcC
Confidence            479999999999999999976654

>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
species: Escherichia coli [TaxId: 562]

Probab=80.27  E-value=0.52  Score=37.07  Aligned_cols=25  Identities=24%  Similarity=0.292  Sum_probs=21.4

Q ss_pred             CCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556          36 RKTKVAILGPTASGKSSVALKISEYIP   62 (298)
Q Consensus        36 kg~iI~I~GpTGSGKSTLa~~La~~l~   62 (298)
                      +.++|+|.|.+|  |||.+..|+..+.
T Consensus         1 p~kvI~VTGTnG--KTTt~~mi~~iL~   25 (214)
T d1gg4a4           1 PARVVALTGSSG--KTSVKEMTAAILS   25 (214)
T ss_dssp             CCEEEEEECSSC--HHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCc--HHHHHHHHHHHHH
Confidence            357999999985  9999999998875