Psyllid ID: psy8582


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-
MEVLPNPVVFANNYEAFQQEDIEDSASIFLSNRLEQELRAAKSAQLACGEVLLPSDLLPNVARDILRLAEVEPYGLKGCTLFINFETDQECRKIATITCDPNTVSTFELYLTLRQDFRHSWHSLLPQFLKNLTKGGTIMISRGFTLEKKRLYRTYSDSIKE
ccccccccEEcccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEcccccHHHHHHHHHHHHHccccccccEEEEEEEEccccEEEEEEEEEccccccEEEEEEEEEEcccccccccHHHHHHccccccEEEEccccEEEEEcccccccccccc
cEEEcccEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccEEEccHHHHHHHHHHHHHHHccccccccEEEEEEEEEccccEEEEEEEEEccccccEEEEEEEEEEccccccccHHHHHHHccccccEEEEccccEEEEEEEEcccccEEEc
mevlpnpvvfannyeafqqediedsaSIFLSNRLEQELRAAKSAQLAcgevllpsdllpnVARDILRLaevepyglkgctlFINFETDQECRKIatitcdpntvSTFELYLTLRQDFRHSWHSLLPQFLKNLTKGGTIMISRGFTLEKKRLYRTYSDSIKE
MEVLPNPVVFANNYEAFQQEDIEDSASIFLSNRLEQELRAAKSAQLAcgevllpsdlLPNVARDILRLAEVEPYGLKGCTLFINFETDQECRKIAtitcdpntVSTFELYLTLRQDFRHSWHSLLPQFLKnltkggtimisrgftlekkrlyrtysdsike
MEVLPNPVVFANNYEAFQQEDIEDSASIFLSNRLEQELRAAKSAQLACGEVLLPSDLLPNVARDILRLAEVEPYGLKGCTLFINFETDQECRKIATITCDPNTVSTFELYLTLRQDFRHSWHSLLPQFLKNLTKGGTIMISRGFTLEKKRLYRTYSDSIKE
*******VVFANNYEAFQQEDIEDSASIFLSNRLEQELRAAKSAQLACGEVLLPSDLLPNVARDILRLAEVEPYGLKGCTLFINFETDQECRKIATITCDPNTVSTFELYLTLRQDFRHSWHSLLPQFLKNLTKGGTIMISRGFTLEKKRLYRT*******
**VLPNPVVFANNYEAFQQEDIEDSASIFLSNRLEQELRAAKSAQLACGEVLLPSDLLPNVARDILRLAEVEPYGLKGCTLFINFETDQECRKIATITCDPNTVSTFELYLTLRQDFRHSWHSLLPQFLKNLTK*GTIMISRGFTLEKKRLYRT****I**
MEVLPNPVVFANNYEAFQQEDIEDSASIFLSNRLEQELRAAKSAQLACGEVLLPSDLLPNVARDILRLAEVEPYGLKGCTLFINFETDQECRKIATITCDPNTVSTFELYLTLRQDFRHSWHSLLPQFLKNLTKGGTIMISRGFTLEKKRLYRTYSDSIKE
MEVLPNPVVFANNYEAFQQEDIEDSASIFLSNRLEQELRAAKSAQLACGEVLLPSDLLPNVARDILRLAEVEPYGLKGCTLFINFETDQECRKIATITCDPNTVSTFELYLTLRQDFRHSWHSLLPQFLKNLTKGGTIMISRGFTLEKKRLYRTYSD*IK*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEVLPNPVVFANNYEAFQQEDIEDSASIFLSNRLEQELRAAKSAQLACGEVLLPSDLLPNVARDILRLAEVEPYGLKGCTLFINFETDQECRKIATITCDPNTVSTFELYLTLRQDFRHSWHSLLPQFLKNLTKGGTIMISRGFTLEKKRLYRTYSDSIKE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query161 2.2.26 [Sep-21-2011]
Q9VTI8299 Protein charybde OS=Droso yes N/A 0.832 0.448 0.522 2e-32
Q9VTH4280 Protein scylla OS=Drosoph no N/A 0.745 0.428 0.572 3e-32
Q2LZ58289 Protein charybde OS=Droso yes N/A 0.832 0.463 0.514 1e-31
Q8VD50193 DNA damage-inducible tran yes N/A 0.906 0.756 0.347 2e-19
Q5R8K0193 DNA damage-inducible tran yes N/A 0.857 0.715 0.370 3e-19
Q96D03193 DNA damage-inducible tran yes N/A 0.857 0.715 0.370 3e-19
A2VDT9193 DNA damage-inducible tran yes N/A 0.857 0.715 0.363 8e-19
Q8VHZ5193 DNA damage-inducible tran yes N/A 0.857 0.715 0.363 1e-18
Q8VHZ9229 DNA damage-inducible tran no N/A 0.708 0.497 0.348 2e-12
Q9D3F7229 DNA damage-inducible tran no N/A 0.708 0.497 0.340 3e-12
>sp|Q9VTI8|CHRB_DROME Protein charybde OS=Drosophila melanogaster GN=chrb PE=2 SV=2 Back     alignment and function desciption
 Score =  137 bits (346), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 71/136 (52%), Positives = 95/136 (69%), Gaps = 2/136 (1%)

Query: 20  EDIEDSASIFLSNRLEQELRAAKSAQLACGEVLLPSDLLPNVARDILRLAEVEPYGLKGC 79
           +D+  SA   LS +L+ +LR AK   LAC EV LP+DL   +A +I+R++E EP G + C
Sbjct: 164 DDVSASAVRELSQQLQAQLRDAKRRHLACTEVTLPNDLTQRIAAEIIRMSEREPCGERAC 223

Query: 80  TLFINFETD-QECRKIATITCDPNTVSTFELYLTLRQDFRHSWHSLLPQFLKNLTKGGTI 138
           TLFI FE++  + ++IA    DP+TVS FELYLTLRQD +  W SL+PQF+KNLT+  TI
Sbjct: 224 TLFIEFESEPNKVKRIAYFKVDPDTVSIFELYLTLRQD-KSGWSSLVPQFIKNLTRSNTI 282

Query: 139 MISRGFTLEKKRLYRT 154
            IS  FTL KK+LY +
Sbjct: 283 NISPDFTLTKKKLYSS 298




Inhibits cell growth by regulating the Tor pathway upstream of the Tsc1-Tsc2 complex and downstream of Akt1. Acts as cell death activator during head development.
Drosophila melanogaster (taxid: 7227)
>sp|Q9VTH4|SCLLA_DROME Protein scylla OS=Drosophila melanogaster GN=scyl PE=2 SV=1 Back     alignment and function description
>sp|Q2LZ58|CHRB_DROPS Protein charybde OS=Drosophila pseudoobscura pseudoobscura GN=chrb PE=2 SV=1 Back     alignment and function description
>sp|Q8VD50|DDT4L_RAT DNA damage-inducible transcript 4-like protein OS=Rattus norvegicus GN=Ddit4l PE=2 SV=1 Back     alignment and function description
>sp|Q5R8K0|DDT4L_PONAB DNA damage-inducible transcript 4-like protein OS=Pongo abelii GN=DDIT4L PE=2 SV=1 Back     alignment and function description
>sp|Q96D03|DDT4L_HUMAN DNA damage-inducible transcript 4-like protein OS=Homo sapiens GN=DDIT4L PE=2 SV=1 Back     alignment and function description
>sp|A2VDT9|DDT4L_BOVIN DNA damage-inducible transcript 4-like protein OS=Bos taurus GN=DDIT4L PE=2 SV=1 Back     alignment and function description
>sp|Q8VHZ5|DDT4L_MOUSE DNA damage-inducible transcript 4-like protein OS=Mus musculus GN=Ddit4l PE=1 SV=1 Back     alignment and function description
>sp|Q8VHZ9|DDIT4_RAT DNA damage-inducible transcript 4 protein OS=Rattus norvegicus GN=Ddit4 PE=1 SV=1 Back     alignment and function description
>sp|Q9D3F7|DDIT4_MOUSE DNA damage-inducible transcript 4 protein OS=Mus musculus GN=Ddit4 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query161
307168544159 Protein charybde [Camponotus floridanus] 0.975 0.987 0.679 2e-53
350405953157 PREDICTED: protein charybde-like [Bombus 0.956 0.980 0.679 2e-51
340711716157 PREDICTED: protein charybde-like [Bombus 0.956 0.980 0.679 2e-51
307210156159 Protein charybde [Harpegnathos saltator] 0.975 0.987 0.660 4e-51
380019069157 PREDICTED: protein charybde-like [Apis f 0.950 0.974 0.673 7e-51
110774512157 PREDICTED: protein charybde-like [Apis m 0.950 0.974 0.666 3e-50
383865462159 PREDICTED: protein charybde-like [Megach 0.975 0.987 0.647 3e-50
332030524 272 Protein charybde [Acromyrmex echinatior] 0.863 0.511 0.685 6e-49
240848621163 DNA damage-inducible transcript 4-like p 0.950 0.938 0.564 3e-44
91088275157 PREDICTED: similar to AGAP011600-PA [Tri 0.968 0.993 0.512 4e-37
>gi|307168544|gb|EFN61602.1| Protein charybde [Camponotus floridanus] Back     alignment and taxonomy information
 Score =  213 bits (542), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 108/159 (67%), Positives = 125/159 (78%), Gaps = 2/159 (1%)

Query: 1   MEVLPNPV-VFANNYEAFQQEDIEDSASIFLSNRLEQELRAAKSAQLACGEVLLPSDLLP 59
           MEVLP PV V  +N  A  + D  D A   L+ RLE ELR AK AQLACGEVLLP++LLP
Sbjct: 1   MEVLPCPVNVDFSNTRAGSETDELDGACQALAKRLEVELRRAKHAQLACGEVLLPANLLP 60

Query: 60  NVARDILRLAEVEPYGLKGCTLFINFETDQECRKIATITCDPNTVSTFELYLTLRQDFRH 119
            VA+D+L +AE EP GL+GCTLFI+FETD  CRK++ I CDPN VSTFELYLTL+QD+  
Sbjct: 61  KVAKDVLTMAENEPCGLRGCTLFISFETDSMCRKLSKIQCDPNAVSTFELYLTLKQDYT- 119

Query: 120 SWHSLLPQFLKNLTKGGTIMISRGFTLEKKRLYRTYSDS 158
           SWH LLPQFLKNLT+GGTIMISR FTLEKK+LYR+Y  S
Sbjct: 120 SWHMLLPQFLKNLTRGGTIMISRDFTLEKKKLYRSYQQS 158




Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350405953|ref|XP_003487606.1| PREDICTED: protein charybde-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340711716|ref|XP_003394417.1| PREDICTED: protein charybde-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|307210156|gb|EFN86829.1| Protein charybde [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|380019069|ref|XP_003693439.1| PREDICTED: protein charybde-like [Apis florea] Back     alignment and taxonomy information
>gi|110774512|ref|XP_625046.2| PREDICTED: protein charybde-like [Apis mellifera] Back     alignment and taxonomy information
>gi|383865462|ref|XP_003708192.1| PREDICTED: protein charybde-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|332030524|gb|EGI70212.1| Protein charybde [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|240848621|ref|NP_001155726.1| DNA damage-inducible transcript 4-like protein [Acyrthosiphon pisum] gi|239792740|dbj|BAH72677.1| ACYPI007771 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|91088275|ref|XP_967998.1| PREDICTED: similar to AGAP011600-PA [Tribolium castaneum] gi|270011810|gb|EFA08258.1| hypothetical protein TcasGA2_TC005886 [Tribolium castaneum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query161
FB|FBgn0036165299 chrb "charybde" [Drosophila me 0.819 0.441 0.529 5.4e-31
FB|FBgn0041094280 scyl "scylla" [Drosophila mela 0.745 0.428 0.572 2.3e-30
UNIPROTKB|Q2LZ58289 chrb "Protein charybde" [Droso 0.844 0.470 0.514 2.3e-30
UNIPROTKB|I3LT71193 DDIT4L "Uncharacterized protei 0.857 0.715 0.377 6.3e-21
UNIPROTKB|E2R660193 DDIT4L "Uncharacterized protei 0.857 0.715 0.363 2.7e-20
UNIPROTKB|F6X7I9197 DDIT4L "Uncharacterized protei 0.857 0.700 0.363 2.7e-20
UNIPROTKB|J9P9A5245 DDIT4L "Uncharacterized protei 0.857 0.563 0.363 2.7e-20
UNIPROTKB|Q96D03193 DDIT4L "DNA damage-inducible t 0.857 0.715 0.370 3.5e-20
UNIPROTKB|Q5R8K0193 DDIT4L "DNA damage-inducible t 0.857 0.715 0.370 3.5e-20
RGD|619738193 Ddit4l "DNA-damage-inducible t 0.857 0.715 0.370 3.5e-20
FB|FBgn0036165 chrb "charybde" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 71/134 (52%), Positives = 94/134 (70%)

Query:    20 EDIEDSASIFLSNRLEQELRAAKSAQLACGEVLLPSDLLPNVARDILRLAEVEPYGLKGC 79
             +D+  SA   LS +L+ +LR AK   LAC EV LP+DL   +A +I+R++E EP G + C
Sbjct:   164 DDVSASAVRELSQQLQAQLRDAKRRHLACTEVTLPNDLTQRIAAEIIRMSEREPCGERAC 223

Query:    80 TLFINFETD-QECRKIATITCDPNTVSTFELYLTLRQDFRHSWHSLLPQFLKNLTKGGTI 138
             TLFI FE++  + ++IA    DP+TVS FELYLTLRQD +  W SL+PQF+KNLT+  TI
Sbjct:   224 TLFIEFESEPNKVKRIAYFKVDPDTVSIFELYLTLRQD-KSGWSSLVPQFIKNLTRSNTI 282

Query:   139 MISRGFTLEKKRLY 152
              IS  FTL KK+LY
Sbjct:   283 NISPDFTLTKKKLY 296




GO:0003674 "molecular_function" evidence=ND
GO:0005737 "cytoplasm" evidence=IEA
GO:0009968 "negative regulation of signal transduction" evidence=IEA
GO:0045926 "negative regulation of growth" evidence=IGI
GO:0008219 "cell death" evidence=IMP
GO:0008258 "head involution" evidence=IMP
FB|FBgn0041094 scyl "scylla" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q2LZ58 chrb "Protein charybde" [Drosophila pseudoobscura pseudoobscura (taxid:46245)] Back     alignment and assigned GO terms
UNIPROTKB|I3LT71 DDIT4L "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2R660 DDIT4L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F6X7I9 DDIT4L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9P9A5 DDIT4L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q96D03 DDIT4L "DNA damage-inducible transcript 4-like protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5R8K0 DDIT4L "DNA damage-inducible transcript 4-like protein" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
RGD|619738 Ddit4l "DNA-damage-inducible transcript 4-like" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A2VDT9DDT4L_BOVINNo assigned EC number0.36360.85710.7150yesN/A
Q8VHZ5DDT4L_MOUSENo assigned EC number0.36360.85710.7150yesN/A
Q2LZ58CHRB_DROPSNo assigned EC number0.51470.83220.4636yesN/A
Q8VD50DDT4L_RATNo assigned EC number0.34730.90680.7564yesN/A
Q96D03DDT4L_HUMANNo assigned EC number0.37060.85710.7150yesN/A
Q9VTI8CHRB_DROMENo assigned EC number0.52200.83220.4481yesN/A
Q5R8K0DDT4L_PONABNo assigned EC number0.37060.85710.7150yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query161
pfam07809116 pfam07809, RTP801_C, RTP801 C-terminal region 4e-49
>gnl|CDD|191858 pfam07809, RTP801_C, RTP801 C-terminal region Back     alignment and domain information
 Score =  153 bits (389), Expect = 4e-49
 Identities = 62/116 (53%), Positives = 81/116 (69%), Gaps = 2/116 (1%)

Query: 38  LRAAKSAQLACGEVLLPSDLLPNVARDILRLAEVEPYGLKGCTLFINFETD-QECRKIAT 96
           LR AK   L C EVLLP+DL P +A+++LRL+E EP GL+GCT+ + FE + + CR+IA 
Sbjct: 1   LRKAKQRHLRCTEVLLPADLTPRIAQELLRLSESEPCGLRGCTIDVEFEDEPKNCRRIAQ 60

Query: 97  ITCDPNTVSTFELYLTLRQDFRHSWHSLLPQFLKNLTKGGTIMISRGFTLEKKRLY 152
           I  DP+TV TFEL L LRQD R  W S+L  F  +L +G T+ +S GF L KK+LY
Sbjct: 61  IKVDPSTVPTFELTLVLRQDSR-GWTSILGLFSTSLGRGQTLTLSPGFRLIKKKLY 115


The members of this family are sequences similar to the C-terminal region of RTP801, the protein product of a hypoxia-inducible factor 1 (HIF-1)- responsive gene. Two members of this family expressed by Drosophila melanogaster, Scylla and Charybde, are designated by the GenBank as Hox targets. RTP801 is thought to be involved in various cellular processes. Its overexpression caused the apoptosis- resistant phenotype in cycling cells, and apoptosis sensitivity in growth arrested cells. Moreover, the protein product of the mouse homolog of RTP801 (dig2) is thought to be induced by diverse apoptotic signals, and also by dexamethasone treatment. Length = 116

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 161
PF07809116 RTP801_C: RTP801 C-terminal region; InterPro: IPR0 100.0
>PF07809 RTP801_C: RTP801 C-terminal region; InterPro: IPR012918 The members of this family are sequences similar to the C-terminal region of RTP801, the protein product of a hypoxia-inducible factor 1 (HIF-1)- responsive gene [] Back     alignment and domain information
Probab=100.00  E-value=1.1e-60  Score=366.82  Aligned_cols=115  Identities=54%  Similarity=0.922  Sum_probs=82.8

Q ss_pred             HHHhhccccccceeecCCCchHHHHHHHHHhhhcCCCcccceEEEEEeecc-cceeeeeeEeeCCCCCceeEEEEEEEec
Q psy8582          38 LRAAKSAQLACGEVLLPSDLLPNVARDILRLAEVEPYGLKGCTLFINFETD-QECRKIATITCDPNTVSTFELYLTLRQD  116 (161)
Q Consensus        38 Lr~AK~~~L~C~~lLlP~~L~~rIa~dvLrls~~EPCGlRGc~I~v~~E~~-~~~~~l~~i~~DP~~VpTFELtLvlrqd  116 (161)
                      |++||+++|+|+|||+|++|++|||+||||+|++||||+|||+|||+||+| ++|+++|+|+|||+||||||||||||||
T Consensus         1 L~~AK~~~L~C~~vLlP~~L~~~Ia~dvL~ls~~EPCGlRGc~i~v~~E~~~~~~~~l~~i~~Dp~~vpTFEL~Lvlr~d   80 (116)
T PF07809_consen    1 LRKAKRSHLRCSEVLLPEDLTRRIARDVLRLSESEPCGLRGCLIDVCFEDEPDNCRRLGQIKVDPSTVPTFELTLVLRQD   80 (116)
T ss_dssp             HTTEESSSSSEE-EE--HHHHHHHHHHHHHHHTTSTTGGGGEEEEEEEEET-TEEEEEEEEES-TTS---EEEEEEEE--
T ss_pred             CchhhhCcccCceEEchHHHHHHHHHHHHHhhcCCCCcceeeEEEEEEccccchheeeccEecCCCCCCcEEEEEEEeeC
Confidence            789999999999999999999999999999999999999999999999999 9999999999999999999999999999


Q ss_pred             CCCCCccchhhhhhccCCCceEEeCCCcEEeeecccc
Q psy8582         117 FRHSWHSLLPQFLKNLTKGGTIMISRGFTLEKKRLYR  153 (161)
Q Consensus       117 ~~~~W~~~~~~F~~~~~~~~tl~Lsp~frliKkKLYs  153 (161)
                      + ++||+++|+|.++.++++||+||||||+|||||||
T Consensus        81 ~-~~W~~l~~~F~~~~~~~~tl~ls~~frliKkKLYS  116 (116)
T PF07809_consen   81 S-SGWPSLRPLFLKNPGRGRTLRLSPGFRLIKKKLYS  116 (116)
T ss_dssp             T-T-------S--T-------EE--S-EEEEEEE---
T ss_pred             C-CCCHhHHHHhccCcCCCceEEECCCCEEEeccccC
Confidence            9 69999999999999999999999999999999997



Two members of this family expressed by Drosophila melanogaster, Scylla (Q9NHN4 from SWISSPROT) and Charybde (Q9NHN5 from SWISSPROT), are designated as Hox targets []. RTP801 is thought to be involved in various cellular processes []. Over expression of the gene caused the apoptosis-resistant phenotype in cycling cells, and apoptosis sensitivity in growth arrested cells []. Moreover, the protein product of the mouse homologue of RTP801 (dig2 (Q9D3F7 from SWISSPROT)) is thought to be induced by diverse apoptotic signals, and also by dexamethasone treatment []. ; GO: 0009968 negative regulation of signal transduction, 0005737 cytoplasm; PDB: 3LQ9_A.


Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query161
3lq9_A134 Crystal Strucure Of Human Redd1, A Hypoxia-Induced 7e-13
>pdb|3LQ9|A Chain A, Crystal Strucure Of Human Redd1, A Hypoxia-Induced Regulator Of Mtor Length = 134 Back     alignment and structure

Iteration: 1

Score = 69.7 bits (169), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 64/125 (51%), Gaps = 1/125 (0%) Query: 30 LSNRLEQELRAAKSAQLACGEVLLPSDLLPNVARDILRLAEVEPYGLKGCTLFINFETDQ 89 L L++ L A+ +L PS L+ V +++LRLA EP GL+G L + E + Sbjct: 9 LXQLLQESLAQARLGSRRPARLLXPSQLVSQVGKELLRLAYSEPCGLRGALLDVCVEQGK 68 Query: 90 ECRKIATITCDPNTVSTFELYLTLRQDFRHSWHSLLPQFLKNLTKGGTIMISRGFTLEKK 149 C + + DP+ V TF+L L LR D R W + F + ++ +S GF + KK Sbjct: 69 SCHSVGQLALDPSLVPTFQLTLVLRLDSRL-WPKIQGLFSSANSPSQSLTLSTGFRVIKK 127 Query: 150 RLYRT 154 +LY + Sbjct: 128 KLYSS 132

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query161
3lq9_A134 DNA-damage-inducible transcript 4 protein; REDD1 D 1e-57
>3lq9_A DNA-damage-inducible transcript 4 protein; REDD1 DDIT4 MTOR, hypoxia, cancer, signaling protein; 2.00A {Homo sapiens} Length = 134 Back     alignment and structure
 Score =  175 bits (446), Expect = 1e-57
 Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 1/133 (0%)

Query: 23  EDSASIFLSNRLEQELRAAKSAQLACGEVLLPSDLLPNVARDILRLAEVEPYGLKGCTLF 82
           ++     L   L++ L  A+        +L+PS L+  V +++LRLA  EP GL+G  L 
Sbjct: 2   DEHLCANLMQLLQESLAQARLGSRRPARLLMPSQLVSQVGKELLRLAYSEPCGLRGALLD 61

Query: 83  INFETDQECRKIATITCDPNTVSTFELYLTLRQDFRHSWHSLLPQFLKNLTKGGTIMISR 142
           +  E  + C  +  +  DP+ V TF+L L LR D R  W  +   F    +   ++ +S 
Sbjct: 62  VCVEQGKSCHSVGQLALDPSLVPTFQLTLVLRLDSR-LWPKIQGLFSSANSPSQSLTLST 120

Query: 143 GFTLEKKRLYRTY 155
           GF + KK+LY + 
Sbjct: 121 GFRVIKKKLYSSE 133


Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query161
3lq9_A134 DNA-damage-inducible transcript 4 protein; REDD1 D 100.0
>3lq9_A DNA-damage-inducible transcript 4 protein; REDD1 DDIT4 MTOR, hypoxia, cancer, signaling protein; 2.00A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=3.3e-66  Score=404.36  Aligned_cols=133  Identities=30%  Similarity=0.524  Sum_probs=125.0

Q ss_pred             hhHHHHHHHHHHHHHHHHhhccccccceeecCCCchHHHHHHHHHhhhcCCCcccceEEEEEeecccceeeeeeEeeCCC
Q psy8582          23 EDSASIFLSNRLEQELRAAKSAQLACGEVLLPSDLLPNVARDILRLAEVEPYGLKGCTLFINFETDQECRKIATITCDPN  102 (161)
Q Consensus        23 e~~~~~~L~~~le~~Lr~AK~~~L~C~~lLlP~~L~~rIa~dvLrls~~EPCGlRGc~I~v~~E~~~~~~~l~~i~~DP~  102 (161)
                      ||.+|++|+++||.||++||.++|+|++||||++|++|||+||||+|++||||+|||+|||++|+|++|+++++|+|||+
T Consensus         2 ee~~c~~l~~~le~~L~~AK~~~L~Cs~vLlP~~L~~rIa~dvLrls~~EPCGlRGc~i~v~vE~~~~c~~l~~I~~Dp~   81 (134)
T 3lq9_A            2 DEHLCANLMQLLQESLAQARLGSRRPARLLMPSQLVSQVGKELLRLAYSEPCGLRGALLDVCVEQGKSCHSVGQLALDPS   81 (134)
T ss_dssp             CHHHHHHHHHHHHHHHTTEESSSSCEECEECCHHHHHHHHHHHHHHHTTSTTGGGGEEEEEEEEETTEEEEEEEEESCTT
T ss_pred             chHHHHHHHHHHHHHHHHHhhccccCceEEChHHHHHHHHHHHHHHhcCCCCccceeEEEEEEecCccccccCcEeeCCC
Confidence            45699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeEEEEEEEecCCCCCccchhhhhhccCCCceEEeCCCcEEeeeccccccc
Q psy8582         103 TVSTFELYLTLRQDFRHSWHSLLPQFLKNLTKGGTIMISRGFTLEKKRLYRTYS  156 (161)
Q Consensus       103 ~VpTFELtLvlrqd~~~~W~~~~~~F~~~~~~~~tl~Lsp~frliKkKLYsS~~  156 (161)
                      ||||||||||||||+ ++||+++|+|+++.++++||+|||||||+|||||||++
T Consensus        82 ~vpTFEL~Lvlr~d~-~~W~~l~~~f~~~~~~~~tl~lSp~frl~KkKLYsS~~  134 (134)
T 3lq9_A           82 LVPTFQLTLVLRLDS-RLWPKIQGLFSSANSPSQSLTLSTGFRVIKKKLYSSEQ  134 (134)
T ss_dssp             SCCCEEEEEEEECCT-TCC-CCCCSCCTTSCCCCCEECCSCEEEEEEECC----
T ss_pred             CCccEEEEEEEeeCC-CCCHhHHHHHhcCCCCCceEEECCCcEEEeeecccCCC
Confidence            999999999999999 59999999999888889999999999999999999974




Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00