Psyllid ID: psy858

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--
Protein Sequence
MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR
Secondary Structure (PSIPRED)
cccccHHccccccccccHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHHHHcccEEEEEccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHccHHHcccHHHHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHHHHHHcccEEEEEEcc
Coil and Loop (DISEMBL)
mglteyrhresgrysggnkrKLSTAMaligdpplvfldeptsgvdpisrHRLWAVLSQIQKTGQSIVLTSHR
Flexible Loop (DISEMBL)
mglteyrhresgrysggnkrKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQiqktgqsivltshr
Low Complexity Region (SEG)
MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR
Disordered region (IsUnstruct)
*************************MALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT**********
Disordered Region (DISOPRED)
*G*****HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH*
Disordered Region (DISEMBL)
******************KRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR
Disordered Region (DISPRO)
MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	72
328722868	670	PREDICTED: ATP-binding cassette sub-fami	0.986	0.105	0.718	2e-24
328705811	1747	PREDICTED: ATP-binding cassette sub-fami	0.972	0.040	0.690	6e-24
390344366	2717	PREDICTED: ATP-binding cassette sub-fami	0.972	0.025	0.676	1e-21
405974925	1716	ATP-binding cassette sub-family A member	0.944	0.039	0.623	6e-21
242013193	1441	conserved hypothetical protein [Pediculu	0.944	0.047	0.681	2e-20
405945282	1191	ATP-binding cassette sub-family A member	0.944	0.057	0.608	9e-20
289623446	1721	ATP-binding cassette transporter sub-fam	0.972	0.040	0.633	1e-19
444723944	2286	ATP-binding cassette sub-family A member	0.986	0.031	0.638	1e-19
524898263	1805	PREDICTED: ATP-binding cassette sub-fami	0.972	0.038	0.605	1e-19
524897576	1674	PREDICTED: ATP-binding cassette sub-fami	0.944	0.040	0.608	1e-19

>gi|328722868|ref|XP_001949822.2| PREDICTED: ATP-binding cassette sub-family A member 1-like [Acyrthosiphon pisum]

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/71 (71%), Positives = 61/71 (85%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           +GL E++ R  G YSGGNKRKL+TAMALIGDPP+VFLDEPTSGVDP++RH LW VL+  Q
Sbjct: 468 LGLEEHKDRICGTYSGGNKRKLNTAMALIGDPPVVFLDEPTSGVDPVARHNLWQVLAASQ 527

Query: 61  KTGQSIVLTSH 71
           + GQ+IVLTSH
Sbjct: 528 RGGQAIVLTSH 538

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328705811|ref|XP_001947916.2| PREDICTED: ATP-binding cassette sub-family A member 3-like [Acyrthosiphon pisum]

 Score =  115 bits (287), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 49/71 (69%), Positives = 61/71 (85%)

Query: 1    MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
            +GL EY+ R  G+YSGGNKRKL+TAMALIGDPP+VFLDEPTSGVDP++R  LW +L+  Q
Sbjct: 1545 LGLEEYKDRVCGKYSGGNKRKLNTAMALIGDPPVVFLDEPTSGVDPVARRNLWQLLAASQ 1604

Query: 61   KTGQSIVLTSH 71
            + GQ++VLTSH
Sbjct: 1605 RGGQAVVLTSH 1615

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|390344366|ref|XP_003726106.1| PREDICTED: ATP-binding cassette sub-family A member 1-like [Strongylocentrotus purpuratus]

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 48/71 (67%), Positives = 60/71 (84%)

Query: 1    MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
            +GLTEYR R +G YSGGNKRKLSTA+ALIG+PP++FLDEPT+G+DP SR  LW  ++ I 
Sbjct: 2371 LGLTEYRDRSAGTYSGGNKRKLSTAIALIGNPPVIFLDEPTTGMDPKSRRFLWNCITSIV 2430

Query: 61   KTGQSIVLTSH 71
            K G+S+VLTSH
Sbjct: 2431 KEGRSVVLTSH 2441

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|405974925|gb|EKC39537.1| ATP-binding cassette sub-family A member 3 [Crassostrea gigas]

 Score =  105 bits (261), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 43/69 (62%), Positives = 60/69 (86%)

Query: 3    LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT 62
            L +Y  R+ G YSGGNKRKLSTA++LIGDPP +FLDEPT+G+DP +R +LW VLSQ++++
Sbjct: 1495 LQKYAARQCGTYSGGNKRKLSTAISLIGDPPFIFLDEPTTGMDPGARRQLWNVLSQVRES 1554

Query: 63   GQSIVLTSH 71
            G++++LTSH
Sbjct: 1555 GRTLILTSH 1563

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|242013193|ref|XP_002427299.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212511640|gb|EEB14561.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/69 (68%), Positives = 57/69 (82%)

Query: 3    LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT 62
            LTE   ++ G YSGGN+RKLSTA++LIGD PL+FLDEPTSGVDP SR  +W V+S+IQK 
Sbjct: 1235 LTELADQKCGTYSGGNQRKLSTAISLIGDCPLIFLDEPTSGVDPASRRVMWDVISEIQKR 1294

Query: 63   GQSIVLTSH 71
             QS+VLTSH
Sbjct: 1295 KQSVVLTSH 1303

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405945282|gb|EKC17257.1| ATP-binding cassette sub-family A member 3 [Crassostrea gigas]

 Score =  101 bits (251), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 42/69 (60%), Positives = 58/69 (84%)

Query: 3    LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT 62
            L +Y ++  G YSGGNKRKLSTA+AL+GDPP + LDEPT+GVDP +R ++W VLS+I+ +
Sbjct: 962  LKQYANKLCGTYSGGNKRKLSTAIALVGDPPFLMLDEPTTGVDPAARRQIWTVLSKIRAS 1021

Query: 63   GQSIVLTSH 71
            G+++VLTSH
Sbjct: 1022 GRTLVLTSH 1030

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|289623446|emb|CAH59462.2| ATP-binding cassette transporter sub-family A [Pecten maximus]

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/71 (63%), Positives = 56/71 (78%)

Query: 1    MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
            M L +Y  +    YSGGNKRKLSTAMALIGDPP V LDEPT+G+DP +R  LW VLS+I+
Sbjct: 1510 MTLRQYADKNCAFYSGGNKRKLSTAMALIGDPPFVLLDEPTTGMDPGARRTLWNVLSKIR 1569

Query: 61   KTGQSIVLTSH 71
             +G+++VLTSH
Sbjct: 1570 ASGRTLVLTSH 1580

Source: Pecten maximus

Species: Pecten maximus

Genus: Pecten

Family: Pectinidae

Order: Pectinoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|444723944|gb|ELW64568.1| ATP-binding cassette sub-family A member 1 [Tupaia chinensis]

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/72 (63%), Positives = 56/72 (77%)

Query: 1    MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
            +GL +Y  + +G YSGGNKRKLSTAMALIG PP+VFLDEPT+G+DP +R  LW     I 
Sbjct: 2088 LGLVKYGEKYAGNYSGGNKRKLSTAMALIGGPPVVFLDEPTTGMDPKARRFLWNCALSII 2147

Query: 61   KTGQSIVLTSHR 72
            K G+S+VLTSHR
Sbjct: 2148 KEGRSVVLTSHR 2159

Source: Tupaia chinensis

Species: Tupaia chinensis

Genus: Tupaia

Family: Tupaiidae

Order: Scandentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|524898263|ref|XP_005105583.1| PREDICTED: ATP-binding cassette sub-family A member 3-like [Aplysia californica]

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/71 (60%), Positives = 59/71 (83%)

Query: 1    MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
            + LT+Y  ++   YSGGNKRKLSTA+ALIGDP +VFLDEPT+G+DP++R  LW VLS ++
Sbjct: 1563 LTLTQYADKQCQTYSGGNKRKLSTAIALIGDPDVVFLDEPTTGMDPMARRMLWEVLSMVR 1622

Query: 61   KTGQSIVLTSH 71
             +G+++VLTSH
Sbjct: 1623 DSGRTLVLTSH 1633

Source: Aplysia californica

Species: Aplysia californica

Genus: Aplysia

Family: Aplysiidae

Class: Gastropoda

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|524897576|ref|XP_005105248.1| PREDICTED: ATP-binding cassette sub-family A member 3-like [Aplysia californica]

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/69 (60%), Positives = 58/69 (84%)

Query: 3    LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT 62
            L  +  + +G+YSGGNKRKLSTAMAL+GDPP + LDEP+SG+DP +R +LW VLSQ++ +
Sbjct: 1453 LRPHADKLAGQYSGGNKRKLSTAMALVGDPPFIMLDEPSSGMDPKARRQLWNVLSQVRAS 1512

Query: 63   GQSIVLTSH 71
            G+++VLTSH
Sbjct: 1513 GRTLVLTSH 1521

Source: Aplysia californica

Species: Aplysia californica

Genus: Aplysia

Family: Aplysiidae

Class: Gastropoda

Phylum: Mollusca

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	72
UNIPROTKB|F5H5R2	392	ABCA4 "Retinal-specific ATP-bi	0.986	0.181	0.619	3.6e-18
UNIPROTKB|I3L6Q4	954	ABCA1 "Uncharacterized protein	0.986	0.074	0.619	3.7e-18
UNIPROTKB|K7GNJ3	961	ABCA1 "Uncharacterized protein	0.986	0.073	0.619	3.7e-18
UNIPROTKB|E2QUX2	2262	ABCA1 "Uncharacterized protein	0.986	0.031	0.633	5.4e-18
UNIPROTKB|F1MG24	2261	ABCA1 "Uncharacterized protein	0.986	0.031	0.633	6.9e-18
UNIPROTKB|O95477	2261	ABCA1 "ATP-binding cassette su	0.986	0.031	0.619	6.9e-18
UNIPROTKB|B4DWY6	543	ABCA4 "cDNA FLJ51128, highly s	0.986	0.130	0.619	9.7e-18
UNIPROTKB|H0YCN5	591	ABCA7 "ATP-binding cassette su	0.986	0.120	0.577	1.2e-17
ZFIN|ZDB-GENE-031006-12	2268	abca1a "ATP-binding cassette,	0.986	0.031	0.619	1.8e-17
MGI|MGI:1351646	2159	Abca7 "ATP-binding cassette, s	0.986	0.032	0.591	2.2e-17

UNIPROTKB|F5H5R2 ABCA4 "Retinal-specific ATP-binding cassette transporter" [Homo sapiens (taxid:9606)]

 Score = 224 (83.9 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 44/71 (61%), Positives = 55/71 (77%)

Query:     1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
             +GLT Y    +G YSGGNKRKLSTA+ALIG PPLV LDEPT+G+DP +R  LW V+  I 
Sbjct:   177 LGLTVYADCLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNVIVSII 236

Query:    61 KTGQSIVLTSH 71
             + G+++VLTSH
Sbjct:   237 REGRAVVLTSH 247

GO:0005524 "ATP binding" evidence=IEA

GO:0004012 "phospholipid-translocating ATPase activity" evidence=IEA

GO:0006649 "phospholipid transfer to membrane" evidence=IEA

GO:0045494 "photoreceptor cell maintenance" evidence=IEA

UNIPROTKB|I3L6Q4 ABCA1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 232 (86.7 bits), Expect = 3.7e-18, P = 3.7e-18
 Identities = 44/71 (61%), Positives = 55/71 (77%)

Query:     1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
             +GL +Y  + +G YSGGNKRKLSTAMALIG PP+VFLDEPT+G+DP +R  LW     I 
Sbjct:   725 LGLVKYGEKYAGNYSGGNKRKLSTAMALIGGPPVVFLDEPTTGMDPKARRFLWNCALSIV 784

Query:    61 KTGQSIVLTSH 71
             K G+S++LTSH
Sbjct:   785 KEGRSVLLTSH 795

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

UNIPROTKB|K7GNJ3 ABCA1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 232 (86.7 bits), Expect = 3.7e-18, P = 3.7e-18
 Identities = 44/71 (61%), Positives = 55/71 (77%)

Query:     1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
             +GL +Y  + +G YSGGNKRKLSTAMALIG PP+VFLDEPT+G+DP +R  LW     I 
Sbjct:   732 LGLVKYGEKYAGNYSGGNKRKLSTAMALIGGPPVVFLDEPTTGMDPKARRFLWNCALSIV 791

Query:    61 KTGQSIVLTSH 71
             K G+S++LTSH
Sbjct:   792 KEGRSVLLTSH 802

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

UNIPROTKB|E2QUX2 ABCA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 235 (87.8 bits), Expect = 5.4e-18, P = 5.4e-18
 Identities = 45/71 (63%), Positives = 55/71 (77%)

Query:     1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
             +GL +Y  + +G YSGGNKRKLSTAMALIG PP+VFLDEPT+G+DP +R  LW     I 
Sbjct:  2033 LGLVKYGEKYAGNYSGGNKRKLSTAMALIGGPPVVFLDEPTTGMDPKARRFLWNCALSIV 2092

Query:    61 KTGQSIVLTSH 71
             K G+S+VLTSH
Sbjct:  2093 KEGRSVVLTSH 2103

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

UNIPROTKB|F1MG24 ABCA1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 234 (87.4 bits), Expect = 6.9e-18, P = 6.9e-18
 Identities = 45/71 (63%), Positives = 55/71 (77%)

Query:     1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
             +GL +Y  + +G YSGGNKRKLSTAMALIG PP+VFLDEPT+G+DP +R  LW     I 
Sbjct:  2032 LGLVKYGEKYAGNYSGGNKRKLSTAMALIGGPPVVFLDEPTTGMDPKARRFLWNCALSII 2091

Query:    61 KTGQSIVLTSH 71
             K G+S+VLTSH
Sbjct:  2092 KEGRSVVLTSH 2102

GO:0071300 "cellular response to retinoic acid" evidence=IEA

GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA

GO:0060155 "platelet dense granule organization" evidence=IEA

GO:0055098 "response to low-density lipoprotein particle stimulus" evidence=IEA

GO:0055091 "phospholipid homeostasis" evidence=IEA

GO:0050702 "interleukin-1 beta secretion" evidence=IEA

GO:0045335 "phagocytic vesicle" evidence=IEA

GO:0045332 "phospholipid translocation" evidence=IEA

GO:0045121 "membrane raft" evidence=IEA

GO:0043691 "reverse cholesterol transport" evidence=IEA

GO:0042632 "cholesterol homeostasis" evidence=IEA

GO:0034616 "response to laminar fluid shear stress" evidence=IEA

GO:0034380 "high-density lipoprotein particle assembly" evidence=IEA

GO:0034188 "apolipoprotein A-I receptor activity" evidence=IEA

GO:0034186 "apolipoprotein A-I binding" evidence=IEA

GO:0033700 "phospholipid efflux" evidence=IEA

GO:0033344 "cholesterol efflux" evidence=IEA

GO:0032489 "regulation of Cdc42 protein signal transduction" evidence=IEA

GO:0032367 "intracellular cholesterol transport" evidence=IEA

GO:0031267 "small GTPase binding" evidence=IEA

GO:0030819 "positive regulation of cAMP biosynthetic process" evidence=IEA

GO:0019905 "syntaxin binding" evidence=IEA

GO:0017127 "cholesterol transporter activity" evidence=IEA

GO:0016197 "endosomal transport" evidence=IEA

GO:0010875 "positive regulation of cholesterol efflux" evidence=IEA

GO:0008509 "anion transmembrane transporter activity" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0007040 "lysosome organization" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IEA

GO:0006497 "protein lipidation" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005548 "phospholipid transporter activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0002790 "peptide secretion" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

UNIPROTKB|O95477 ABCA1 "ATP-binding cassette sub-family A member 1" [Homo sapiens (taxid:9606)]

 Score = 234 (87.4 bits), Expect = 6.9e-18, P = 6.9e-18
 Identities = 44/71 (61%), Positives = 55/71 (77%)

Query:     1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
             +GL +Y  + +G YSGGNKRKLSTAMALIG PP+VFLDEPT+G+DP +R  LW     + 
Sbjct:  2032 LGLVKYGEKYAGNYSGGNKRKLSTAMALIGGPPVVFLDEPTTGMDPKARRFLWNCALSVV 2091

Query:    61 KTGQSIVLTSH 71
             K G+S+VLTSH
Sbjct:  2092 KEGRSVVLTSH 2102

GO:0016887 "ATPase activity" evidence=IEA

GO:0002790 "peptide secretion" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006497 "protein lipidation" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IEA

GO:0010875 "positive regulation of cholesterol efflux" evidence=IEA

GO:0045332 "phospholipid translocation" evidence=IEA

GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA

GO:0071300 "cellular response to retinoic acid" evidence=IEA

GO:0005886 "plasma membrane" evidence=TAS

GO:0006629 "lipid metabolic process" evidence=TAS

GO:0042157 "lipoprotein metabolic process" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0010745 "negative regulation of macrophage derived foam cell differentiation" evidence=TAS

GO:0010887 "negative regulation of cholesterol storage" evidence=TAS

GO:0034188 "apolipoprotein A-I receptor activity" evidence=IDA

GO:0042632 "cholesterol homeostasis" evidence=IDA

GO:0008203 "cholesterol metabolic process" evidence=IDA

GO:0033700 "phospholipid efflux" evidence=IDA;IMP

GO:0055091 "phospholipid homeostasis" evidence=IMP

GO:0015485 "cholesterol binding" evidence=IC

GO:0005548 "phospholipid transporter activity" evidence=IDA

GO:0005543 "phospholipid binding" evidence=IC

GO:0043691 "reverse cholesterol transport" evidence=IMP

GO:0019905 "syntaxin binding" evidence=IPI

GO:0045121 "membrane raft" evidence=IDA

GO:0008509 "anion transmembrane transporter activity" evidence=ISS

GO:0030819 "positive regulation of cAMP biosynthetic process" evidence=IMP

GO:0005524 "ATP binding" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=IDA

GO:0016197 "endosomal transport" evidence=IDA

GO:0030139 "endocytic vesicle" evidence=IDA

GO:0007040 "lysosome organization" evidence=IDA

GO:0032367 "intracellular cholesterol transport" evidence=IMP

GO:0033344 "cholesterol efflux" evidence=IMP;IDA

GO:0017127 "cholesterol transporter activity" evidence=IDA

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0060155 "platelet dense granule organization" evidence=IMP

GO:0050702 "interleukin-1 beta secretion" evidence=IMP

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IMP

GO:0032489 "regulation of Cdc42 protein signal transduction" evidence=IMP

GO:0034186 "apolipoprotein A-I binding" evidence=IPI

GO:0031267 "small GTPase binding" evidence=IPI

GO:0034185 "apolipoprotein binding" evidence=IPI

GO:0055098 "response to low-density lipoprotein particle stimulus" evidence=IEP

GO:0034616 "response to laminar fluid shear stress" evidence=IEP

GO:0034380 "high-density lipoprotein particle assembly" evidence=IMP

GO:0038027 "apolipoprotein A-I-mediated signaling pathway" evidence=IDA

UNIPROTKB|B4DWY6 ABCA4 "cDNA FLJ51128, highly similar to Retinal-specific ATP-binding cassette transporter" [Homo sapiens (taxid:9606)]

 Score = 224 (83.9 bits), Expect = 9.7e-18, P = 9.7e-18
 Identities = 44/71 (61%), Positives = 55/71 (77%)

Query:     1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
             +GLT Y    +G YSGGNKRKLSTA+ALIG PPLV LDEPT+G+DP +R  LW V+  I 
Sbjct:   328 LGLTVYADCLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNVIVSII 387

Query:    61 KTGQSIVLTSH 71
             + G+++VLTSH
Sbjct:   388 REGRAVVLTSH 398

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|H0YCN5 ABCA7 "ATP-binding cassette sub-family A member 7" [Homo sapiens (taxid:9606)]

 Score = 224 (83.9 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 41/71 (57%), Positives = 56/71 (78%)

Query:     1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
             +GL+ Y  R +G YSGGNKRKL+TA+AL+GDP +VFLDEPT+G+DP +R  LW  L  + 
Sbjct:   358 LGLSWYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNSLLAVV 417

Query:    61 KTGQSIVLTSH 71
             + G+S++LTSH
Sbjct:   418 REGRSVMLTSH 428

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

ZFIN|ZDB-GENE-031006-12 abca1a "ATP-binding cassette, sub-family A (ABC1), member 1A" [Danio rerio (taxid:7955)]

 Score = 230 (86.0 bits), Expect = 1.8e-17, P = 1.8e-17
 Identities = 44/71 (61%), Positives = 55/71 (77%)

Query:     1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
             +GL +Y  + +G YSGGN RKLSTAMALIG PP+VFLDEPT+G+DP +R  LW  +  I 
Sbjct:  2039 LGLMKYVDKAAGSYSGGNMRKLSTAMALIGGPPVVFLDEPTTGMDPKARRALWNCILSII 2098

Query:    61 KTGQSIVLTSH 71
             K G+S+VLTSH
Sbjct:  2099 KEGRSVVLTSH 2109

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

MGI|MGI:1351646 Abca7 "ATP-binding cassette, sub-family A (ABC1), member 7" [Mus musculus (taxid:10090)]

 Score = 229 (85.7 bits), Expect = 2.2e-17, P = 2.2e-17
 Identities = 42/71 (59%), Positives = 55/71 (77%)

Query:     1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
             +GL  Y  R +G YSGGNKRKL+TA+AL+GDP +VFLDEPT+G+DP +R  LW  L  + 
Sbjct:  1927 LGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNSLLSVV 1986

Query:    61 KTGQSIVLTSH 71
             + G+S+VLTSH
Sbjct:  1987 REGRSVVLTSH 1997

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005548 "phospholipid transporter activity" evidence=IDA

GO:0005622 "intracellular" evidence=IDA

GO:0005768 "endosome" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

GO:0016020 "membrane" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0033700 "phospholipid efflux" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	72
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	7e-33
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	2e-25
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	4e-25
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	5e-25
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	1e-20
cd03265	220	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist	3e-20
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	7e-20
TIGR01188	302	TIGR01188, drrA, daunorubicin resistance ABC trans	1e-19
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	1e-16
cd03264	211	cd03264, ABC_drug_resistance_like, ABC-type multid	1e-16
cd03235	213	cd03235, ABC_Metallic_Cations, ATP-binding cassett	6e-16
COG1121	254	COG1121, ZnuC, ABC-type Mn/Zn transport systems, A	1e-15
PRK13536	340	PRK13536, PRK13536, nodulation factor exporter sub	1e-15
PRK13537	306	PRK13537, PRK13537, nodulation ABC transporter Nod	1e-15
TIGR01288	303	TIGR01288, nodI, ATP-binding ABC transporter famil	3e-15
cd03219	236	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas	4e-15
cd03268	208	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c	9e-15
COG1122	235	COG1122, CbiO, ABC-type cobalt transport system, A	1e-14
cd03213	194	cd03213, ABCG_EPDR, Eye pigment and drug resistanc	2e-14
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	5e-14
COG4555	245	COG4555, NatA, ABC-type Na+ transport system, ATPa	2e-13
COG0411	250	COG0411, LivG, ABC-type branched-chain amino acid	2e-13
cd03224	222	cd03224, ABC_TM1139_LivF_branched, ATP-binding cas	5e-13
cd03269	210	cd03269, ABC_putative_ATPase, ATP-binding cassette	5e-13
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	5e-13
TIGR01166	190	TIGR01166, cbiO, cobalt transport protein ATP-bind	7e-13
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	9e-13
TIGR00955	617	TIGR00955, 3a01204, The Eye Pigment Precursor Tran	1e-12
COG1125	309	COG1125, OpuBA, ABC-type proline/glycine betaine t	1e-12
cd03226	205	cd03226, ABC_cobalt_CbiO_domain2, Second domain of	2e-12
TIGR03740	223	TIGR03740, galliderm_ABC, gallidermin-class lantib	3e-12
cd03234	226	cd03234, ABCG_White, White pigment protein homolog	4e-12
cd03266	218	cd03266, ABC_NatA_sodium_exporter, ATP-binding cas	6e-12
cd03229	178	cd03229, ABC_Class3, ATP-binding cassette domain o	8e-12
cd03218	232	cd03218, ABC_YhbG, ATP-binding cassette component	1e-11
COG1116	248	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon	1e-11
PRK13646	286	PRK13646, cbiO, cobalt transporter ATP-binding sub	2e-11
cd03295	242	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas	2e-11
TIGR01186	363	TIGR01186, proV, glycine betaine/L-proline transpo	2e-11
cd03261	235	cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca	3e-11
COG1119	257	COG1119, ModF, ABC-type molybdenum transport syste	3e-11
cd03293	220	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c	6e-11
cd03246	173	cd03246, ABCC_Protease_Secretion, ATP-binding cass	6e-11
COG4152	300	COG4152, COG4152, ABC-type uncharacterized transpo	1e-10
PRK13643	288	PRK13643, cbiO, cobalt transporter ATP-binding sub	1e-10
PRK15056	272	PRK15056, PRK15056, manganese/iron transporter ATP	1e-10
COG0410	237	COG0410, LivF, ABC-type branched-chain amino acid	2e-10
cd03255	218	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse	2e-10
COG4987	573	COG4987, CydC, ABC-type transport system involved	2e-10
cd03259	213	cd03259, ABC_Carb_Solutes_like, ATP-binding casset	2e-10
cd03247	178	cd03247, ABCC_cytochrome_bd, ATP-binding cassette	3e-10
cd03299	235	cd03299, ABC_ModC_like, ATP-binding cassette domai	3e-10
COG2274	709	COG2274, SunT, ABC-type bacteriocin/lantibiotic ex	4e-10
COG0444	316	COG0444, DppD, ABC-type dipeptide/oligopeptide/nic	4e-10
COG4586	325	COG4586, COG4586, ABC-type uncharacterized transpo	4e-10
COG1135	339	COG1135, AbcC, ABC-type metal ion transport system	4e-10
COG1127	263	COG1127, Ttg2A, ABC-type transport system involved	4e-10
TIGR03608	206	TIGR03608, L_ocin_972_ABC, putative bacteriocin ex	5e-10
COG1136	226	COG1136, SalX, ABC-type antimicrobial peptide tran	6e-10
cd03257	228	cd03257, ABC_NikE_OppD_transporters, ATP-binding c	7e-10
cd03298	211	cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin	7e-10
PRK13651	305	PRK13651, PRK13651, cobalt transporter ATP-binding	1e-09
PRK13652	277	PRK13652, cbiO, cobalt transporter ATP-binding sub	1e-09
PRK13649	280	PRK13649, cbiO, cobalt transporter ATP-binding sub	1e-09
COG1123	539	COG1123, COG1123, ATPase components of various ABC	2e-09
PRK13641	287	PRK13641, cbiO, cobalt transporter ATP-binding sub	2e-09
COG4175	386	COG4175, ProV, ABC-type proline/glycine betaine tr	2e-09
TIGR03375	694	TIGR03375, type_I_sec_LssB, type I secretion syste	3e-09
cd03258	233	cd03258, ABC_MetN_methionine_transporter, ATP-bind	3e-09
PLN03211	659	PLN03211, PLN03211, ABC transporter G-25; Provisio	3e-09
TIGR03415	382	TIGR03415, ABC_choXWV_ATP, choline ABC transporter	4e-09
TIGR01842	544	TIGR01842, type_I_sec_PrtD, type I secretion syste	4e-09
TIGR01277	213	TIGR01277, thiQ, thiamine ABC transporter, ATP-bin	4e-09
COG1137	243	COG1137, YhbG, ABC-type (unclassified) transport s	5e-09
PRK13639	275	PRK13639, cbiO, cobalt transporter ATP-binding sub	6e-09
cd03294	269	cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette	6e-09
TIGR02673	214	TIGR02673, FtsE, cell division ATP-binding protein	7e-09
PRK10895	241	PRK10895, PRK10895, lipopolysaccharide ABC transpo	7e-09
PRK13638	271	PRK13638, cbiO, cobalt transporter ATP-binding sub	7e-09
COG4525	259	COG4525, TauB, ABC-type taurine transport system,	9e-09
TIGR03864	236	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi	9e-09
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	9e-09
PRK11614	237	PRK11614, livF, leucine/isoleucine/valine transpor	1e-08
TIGR03771	223	TIGR03771, anch_rpt_ABC, anchored repeat-type ABC	1e-08
PRK09493	240	PRK09493, glnQ, glutamine ABC transporter ATP-bind	1e-08
cd03232	192	cd03232, ABCG_PDR_domain2, Second domain of the pl	1e-08
TIGR02324	224	TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys	1e-08
TIGR03522	301	TIGR03522, GldA_ABC_ATP, gliding motility-associat	1e-08
TIGR03410	230	TIGR03410, urea_trans_UrtE, urea ABC transporter,	2e-08
pfam00005	119	pfam00005, ABC_tran, ABC transporter	2e-08
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	2e-08
COG3840	231	COG3840, ThiQ, ABC-type thiamine transport system,	2e-08
cd03231	201	cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog	2e-08
PRK11160	574	PRK11160, PRK11160, cysteine/glutathione ABC trans	2e-08
cd03262	213	cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai	2e-08
PRK14262	250	PRK14262, PRK14262, phosphate ABC transporter ATP-	2e-08
cd03267	236	cd03267, ABC_NatA_like, ATP-binding cassette domai	2e-08
PRK10762	501	PRK10762, PRK10762, D-ribose transporter ATP bindi	3e-08
cd03300	232	cd03300, ABC_PotA_N, ATP-binding cassette domain o	3e-08
TIGR02314	343	TIGR02314, ABC_MetN, D-methionine ABC transporter,	3e-08
cd03297	214	cd03297, ABC_ModC_molybdenum_transporter, ATP-bind	3e-08
COG1123	539	COG1123, COG1123, ATPase components of various ABC	4e-08
cd03245	220	cd03245, ABCC_bacteriocin_exporters, ATP-binding c	4e-08
TIGR02857	529	TIGR02857, CydD, thiol reductant ABC exporter, Cyd	5e-08
COG4988	559	COG4988, CydD, ABC-type transport system involved	5e-08
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	5e-08
PRK13634	290	PRK13634, cbiO, cobalt transporter ATP-binding sub	5e-08
PRK13647	274	PRK13647, cbiO, cobalt transporter ATP-binding sub	5e-08
PRK14248	268	PRK14248, PRK14248, phosphate ABC transporter ATP-	5e-08
PRK11248	255	PRK11248, tauB, taurine transporter ATP-binding su	6e-08
cd03292	214	cd03292, ABC_FtsE_transporter, ATP-binding cassett	6e-08
PRK13631	320	PRK13631, cbiO, cobalt transporter ATP-binding sub	7e-08
PRK11300	255	PRK11300, livG, leucine/isoleucine/valine transpor	8e-08
PRK14253	249	PRK14253, PRK14253, phosphate ABC transporter ATP-	8e-08
TIGR02868	530	TIGR02868, CydC, thiol reductant ABC exporter, Cyd	9e-08
TIGR01189	198	TIGR01189, ccmA, heme ABC exporter, ATP-binding pr	9e-08
cd03260	227	cd03260, ABC_PstB_phosphate_transporter, ATP-bindi	1e-07
PRK13637	287	PRK13637, cbiO, cobalt transporter ATP-binding sub	1e-07
COG4618	580	COG4618, ArpD, ABC-type protease/lipase transport	1e-07
COG1124	252	COG1124, DppF, ABC-type dipeptide/oligopeptide/nic	1e-07
PRK13549	506	PRK13549, PRK13549, xylose transporter ATP-binding	1e-07
COG1126	240	COG1126, GlnQ, ABC-type polar amino acid transport	1e-07
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	2e-07
cd03251	234	cd03251, ABCC_MsbA, ATP-binding cassette domain of	2e-07
PRK14247	250	PRK14247, PRK14247, phosphate ABC transporter ATP-	2e-07
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	2e-07
pfam13304	256	pfam13304, AAA_21, AAA domain	2e-07
PRK10938	490	PRK10938, PRK10938, putative molybdenum transport	2e-07
PRK14269	246	PRK14269, PRK14269, phosphate ABC transporter ATP-	2e-07
COG3638	258	COG3638, COG3638, ABC-type phosphate/phosphonate t	2e-07
PRK14251	251	PRK14251, PRK14251, phosphate ABC transporter ATP-	3e-07
PRK13632	271	PRK13632, cbiO, cobalt transporter ATP-binding sub	3e-07
PRK13642	277	PRK13642, cbiO, cobalt transporter ATP-binding sub	3e-07
COG4136	213	COG4136, COG4136, ABC-type uncharacterized transpo	3e-07
TIGR01184	230	TIGR01184, ntrCD, nitrate transport ATP-binding su	3e-07
cd03254	229	cd03254, ABCC_Glucan_exporter_like, ATP-binding ca	3e-07
cd03253	236	cd03253, ABCC_ATM1_transporter, ATP-binding casset	3e-07
PRK14250	241	PRK14250, PRK14250, phosphate ABC transporter ATP-	3e-07
PRK14270	251	PRK14270, PRK14270, phosphate ABC transporter ATP-	3e-07
PRK14257	329	PRK14257, PRK14257, phosphate ABC transporter ATP-	3e-07
TIGR02315	243	TIGR02315, ABC_phnC, phosphonate ABC transporter,	3e-07
PRK14252	265	PRK14252, PRK14252, phosphate ABC transporter ATP-	3e-07
TIGR01193	708	TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t	4e-07
TIGR00972	247	TIGR00972, 3a0107s01c2, phosphate ABC transporter,	4e-07
COG4170	330	COG4170, SapD, ABC-type antimicrobial peptide tran	4e-07
PRK13650	279	PRK13650, cbiO, cobalt transporter ATP-binding sub	4e-07
PRK14245	250	PRK14245, PRK14245, phosphate ABC transporter ATP-	4e-07
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	4e-07
PRK10619	257	PRK10619, PRK10619, histidine/lysine/arginine/orni	4e-07
cd03256	241	cd03256, ABC_PhnC_transporter, ATP-binding cassett	4e-07
PRK14267	253	PRK14267, PRK14267, phosphate ABC transporter ATP-	4e-07
PRK14272	252	PRK14272, PRK14272, phosphate ABC transporter ATP-	5e-07
PRK11176	582	PRK11176, PRK11176, lipid transporter ATP-binding/	5e-07
COG2884	223	COG2884, FtsE, Predicted ATPase involved in cell d	6e-07
PRK14238	271	PRK14238, PRK14238, phosphate transporter ATP-bind	7e-07
PRK13640	282	PRK13640, cbiO, cobalt transporter ATP-binding sub	7e-07
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	7e-07
cd03215	182	cd03215, ABC_Carb_Monos_II, Second domain of the A	7e-07
cd03227	162	cd03227, ABC_Class2, ATP-binding cassette domain o	7e-07
PRK13635	279	PRK13635, cbiO, cobalt transporter ATP-binding sub	8e-07
TIGR03411	242	TIGR03411, urea_trans_UrtD, urea ABC transporter,	8e-07
PRK14274	259	PRK14274, PRK14274, phosphate ABC transporter ATP-	8e-07
PRK14240	250	PRK14240, PRK14240, phosphate transporter ATP-bind	8e-07
PRK14268	258	PRK14268, PRK14268, phosphate ABC transporter ATP-	8e-07
COG4133	209	COG4133, CcmA, ABC-type transport system involved	9e-07
PRK13633	280	PRK13633, PRK13633, cobalt transporter ATP-binding	9e-07
cd03216	163	cd03216, ABC_Carb_Monos_I, First domain of the ATP	9e-07
PRK10771	232	PRK10771, thiQ, thiamine transporter ATP-binding s	1e-06
cd03248	226	cd03248, ABCC_TAP, ATP-binding cassette domain of	1e-06
PRK13636	283	PRK13636, cbiO, cobalt transporter ATP-binding sub	1e-06
PRK14263	261	PRK14263, PRK14263, phosphate ABC transporter ATP-	1e-06
PRK10535	648	PRK10535, PRK10535, macrolide transporter ATP-bind	1e-06
PRK14273	254	PRK14273, PRK14273, phosphate ABC transporter ATP-	2e-06
PRK13644	274	PRK13644, cbiO, cobalt transporter ATP-binding sub	2e-06
COG1118	345	COG1118, CysA, ABC-type sulfate/molybdate transpor	2e-06
TIGR02203	571	TIGR02203, MsbA_lipidA, lipid A export permease/AT	2e-06
PRK14255	252	PRK14255, PRK14255, phosphate ABC transporter ATP-	2e-06
COG4598	256	COG4598, HisP, ABC-type histidine transport system	2e-06
PRK13657	588	PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra	2e-06
PRK14243	264	PRK14243, PRK14243, phosphate transporter ATP-bind	2e-06
COG4674	249	COG4674, COG4674, Uncharacterized ABC-type transpo	2e-06
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-06
cd03301	213	cd03301, ABC_MalK_N, The N-terminal ATPase domain	2e-06
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	2e-06
PRK14258	261	PRK14258, PRK14258, phosphate ABC transporter ATP-	2e-06
PRK14246	257	PRK14246, PRK14246, phosphate ABC transporter ATP-	3e-06
PRK14249	251	PRK14249, PRK14249, phosphate ABC transporter ATP-	3e-06
TIGR02982	220	TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi	3e-06
COG4161	242	COG4161, ArtP, ABC-type arginine transport system,	3e-06
PRK10070	400	PRK10070, PRK10070, glycine betaine transporter AT	4e-06
PRK10982	491	PRK10982, PRK10982, galactose/methyl galaxtoside t	4e-06
PRK14237	267	PRK14237, PRK14237, phosphate transporter ATP-bind	5e-06
COG3839	338	COG3839, MalK, ABC-type sugar transport systems, A	5e-06
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	5e-06
TIGR03796	710	TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste	5e-06
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	6e-06
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	7e-06
cd03223	166	cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset	7e-06
cd03249	238	cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett	7e-06
PRK14266	250	PRK14266, PRK14266, phosphate ABC transporter ATP-	7e-06
TIGR01846	694	TIGR01846, type_I_sec_HlyB, type I secretion syste	7e-06
PRK13645	289	PRK13645, cbiO, cobalt transporter ATP-binding sub	7e-06
TIGR02204	576	TIGR02204, MsbA_rel, ABC transporter, permease/ATP	8e-06
PRK14254	285	PRK14254, PRK14254, phosphate ABC transporter ATP-	9e-06
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	1e-05
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	1e-05
COG1117	253	COG1117, PstB, ABC-type phosphate transport system	1e-05
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	2e-05
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	2e-05
PRK14236	272	PRK14236, PRK14236, phosphate transporter ATP-bind	2e-05
PRK14239	252	PRK14239, PRK14239, phosphate transporter ATP-bind	2e-05
PRK10744	260	PRK10744, pstB, phosphate transporter ATP-binding	2e-05
PRK14242	253	PRK14242, PRK14242, phosphate transporter ATP-bind	2e-05
cd03252	237	cd03252, ABCC_Hemolysin, ATP-binding cassette doma	2e-05
TIGR02770	230	TIGR02770, nickel_nikD, nickel import ATP-binding	2e-05
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	3e-05
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	3e-05
PRK14264	305	PRK14264, PRK14264, phosphate ABC transporter ATP-	3e-05
PRK11153	343	PRK11153, metN, DL-methionine transporter ATP-bind	3e-05
TIGR03258	362	TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans	3e-05
PRK09984	262	PRK09984, PRK09984, phosphonate/organophosphate es	3e-05
PRK11701	258	PRK11701, phnK, phosphonate C-P lyase system prote	3e-05
PRK14259	269	PRK14259, PRK14259, phosphate ABC transporter ATP-	3e-05
TIGR02323	253	TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys	3e-05
COG4178	604	COG4178, COG4178, ABC-type uncharacterized transpo	4e-05
PRK11231	255	PRK11231, fecE, iron-dicitrate transporter ATP-bin	4e-05
PRK14265	274	PRK14265, PRK14265, phosphate ABC transporter ATP-	4e-05
PRK11147	635	PRK11147, PRK11147, ABC transporter ATPase compone	5e-05
PRK14261	253	PRK14261, PRK14261, phosphate ABC transporter ATP-	5e-05
PRK10418	254	PRK10418, nikD, nickel transporter ATP-binding pro	5e-05
TIGR03265	353	TIGR03265, PhnT2, putative 2-aminoethylphosphonate	5e-05
PRK14260	259	PRK14260, PRK14260, phosphate ABC transporter ATP-	6e-05
pfam13558	79	pfam13558, SbcCD_C, Putative exonuclease SbcCD, C	7e-05
PRK13648	269	PRK13648, cbiO, cobalt transporter ATP-binding sub	7e-05
COG5265	497	COG5265, ATM1, ABC-type transport system involved	7e-05
PRK09544	251	PRK09544, znuC, high-affinity zinc transporter ATP	8e-05
TIGR01187	325	TIGR01187, potA, spermidine/putrescine ABC transpo	8e-05
TIGR03873	256	TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra	8e-05
PLN03073	718	PLN03073, PLN03073, ABC transporter F family; Prov	8e-05
PRK14256	252	PRK14256, PRK14256, phosphate ABC transporter ATP-	8e-05
PRK11124	242	PRK11124, artP, arginine transporter ATP-binding s	8e-05
PRK14275	286	PRK14275, PRK14275, phosphate ABC transporter ATP-	9e-05
TIGR00958	711	TIGR00958, 3a01208, Conjugate Transporter-2 (CT2)	9e-05
COG4107	258	COG4107, PhnK, ABC-type phosphonate transport syst	9e-05
cd03290	218	cd03290, ABCC_SUR1_N, ATP-binding cassette domain	1e-04
TIGR02142	354	TIGR02142, modC_ABC, molybdenum ABC transporter, A	1e-04
COG3842	352	COG3842, PotA, ABC-type spermidine/putrescine tran	1e-04
PRK11247	257	PRK11247, ssuB, aliphatic sulfonates transport ATP	1e-04
PRK11607	377	PRK11607, potG, putrescine transporter ATP-binding	1e-04
PRK11629	233	PRK11629, lolD, lipoprotein transporter ATP-bindin	1e-04
PRK11264	250	PRK11264, PRK11264, putative amino-acid ABC transp	1e-04
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	1e-04
cd03217	200	cd03217, ABC_FeS_Assembly, ABC-type transport syst	2e-04
PRK14241	258	PRK14241, PRK14241, phosphate transporter ATP-bind	2e-04
PRK11174	588	PRK11174, PRK11174, cysteine/glutathione ABC trans	2e-04
PRK11831	269	PRK11831, PRK11831, putative ABC transporter ATP-b	2e-04
cd03240	204	cd03240, ABC_Rad50, ATP-binding cassette domain of	2e-04
PRK10789	569	PRK10789, PRK10789, putative multidrug transporter	2e-04
PRK13539	207	PRK13539, PRK13539, cytochrome c biogenesis protei	2e-04
COG1101	263	COG1101, PhnK, ABC-type uncharacterized transport	2e-04
PRK14235	267	PRK14235, PRK14235, phosphate transporter ATP-bind	3e-04
TIGR01192	585	TIGR01192, chvA, glucan exporter ATP-binding prote	3e-04
PRK14271	276	PRK14271, PRK14271, phosphate ABC transporter ATP-	3e-04
PRK10938	490	PRK10938, PRK10938, putative molybdenum transport	4e-04
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	4e-04
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	4e-04
cd03233	202	cd03233, ABCG_PDR_domain1, First domain of the ple	4e-04
PRK15093	330	PRK15093, PRK15093, antimicrobial peptide ABC tran	4e-04
PRK13548	258	PRK13548, hmuV, hemin importer ATP-binding subunit	4e-04
TIGR00968	237	TIGR00968, 3a0106s01, sulfate ABC transporter, ATP	4e-04
PRK10636	638	PRK10636, PRK10636, putative ABC transporter ATP-b	5e-04
PRK14244	251	PRK14244, PRK14244, phosphate ABC transporter ATP-	5e-04
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	5e-04
COG4778	235	COG4778, PhnL, ABC-type phosphonate transport syst	6e-04
PRK15079	331	PRK15079, PRK15079, oligopeptide ABC transporter A	6e-04
TIGR02211	221	TIGR02211, LolD_lipo_ex, lipoprotein releasing sys	6e-04
cd03236	255	cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin	0.001
PRK11288	501	PRK11288, araG, L-arabinose transporter ATP-bindin	0.001
COG4138	248	COG4138, BtuD, ABC-type cobalamin transport system	0.001
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	0.001
COG4181	228	COG4181, COG4181, Predicted ABC-type transport sys	0.001
cd03244	221	cd03244, ABCC_MRP_domain2, ATP-binding cassette do	0.001
cd03250	204	cd03250, ABCC_MRP_domain1, ATP-binding cassette do	0.001
PRK11308	327	PRK11308, dppF, dipeptide transporter ATP-binding	0.001
PRK09473	330	PRK09473, oppD, oligopeptide transporter ATP-bindi	0.001
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	0.002
COG0396	251	COG0396, sufC, Cysteine desulfurase activator ATPa	0.002
PRK13543	214	PRK13543, PRK13543, cytochrome c biogenesis protei	0.002
TIGR03797	686	TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste	0.002
cd03238	176	cd03238, ABC_UvrA, ATP-binding cassette domain of	0.002
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	0.003
COG4619	223	COG4619, COG4619, ABC-type uncharacterized transpo	0.003
TIGR03005	252	TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB	0.003
smart00382	148	smart00382, AAA, ATPases associated with a variety	0.004
PRK10575	265	PRK10575, PRK10575, iron-hydroxamate transporter A	0.004
PRK10584	228	PRK10584, PRK10584, putative ABC transporter ATP-b	0.004
COG4148	352	COG4148, ModC, ABC-type molybdate transport system	0.004

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score =  111 bits (281), Expect = 7e-33
 Identities = 36/71 (50%), Positives = 54/71 (76%), Gaps = 1/71 (1%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           +GLT+  ++ +   SGG KRKLS A+ALIG P ++ LDEPTSG+DP SR  +W ++ +++
Sbjct: 121 LGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVR 180

Query: 61  KTGQSIVLTSH 71
           K G+SI+LT+H
Sbjct: 181 K-GRSIILTTH 190

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score = 91.3 bits (228), Expect = 2e-25
 Identities = 32/63 (50%), Positives = 48/63 (76%)

Query: 9   RESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVL 68
           RE+ + SGG K++L+ A AL+ DP L+ LDEPTSG+DP SR   W +L +++K G++I+L
Sbjct: 91  RENLKLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILL 150

Query: 69  TSH 71
           +SH
Sbjct: 151 SSH 153

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score = 93.5 bits (233), Expect = 4e-25
 Identities = 32/71 (45%), Positives = 50/71 (70%), Gaps = 1/71 (1%)

Query: 2   GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
           GL +  +++    SGG K++LS A+AL+ DP L+ LDEPTSG+DP SR  +W +L ++ K
Sbjct: 125 GLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAK 184

Query: 62  TGQ-SIVLTSH 71
            G  +I+L++H
Sbjct: 185 EGGVTILLSTH 195

Length = 293

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 95.5 bits (237), Expect = 5e-25
 Identities = 43/71 (60%), Positives = 55/71 (77%)

Query: 1    MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
            +GL+ Y  R +G YSGGNKRKLSTA+ALIG PPLV LDEPT+G+DP +R  LW  +  I 
Sbjct: 2058 LGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSII 2117

Query: 61   KTGQSIVLTSH 71
            + G+++VLTSH
Sbjct: 2118 REGRAVVLTSH 2128

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score = 79.8 bits (198), Expect = 1e-20
 Identities = 26/72 (36%), Positives = 44/72 (61%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           +GL   R R     SGG K++++ A  L  DP ++ LDEPT+G+DP  R  L  +L +++
Sbjct: 122 VGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLK 181

Query: 61  KTGQSIVLTSHR 72
             G++I++ +H 
Sbjct: 182 AEGKTIIIVTHD 193

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein

 Score = 79.3 bits (196), Expect = 3e-20
 Identities = 29/72 (40%), Positives = 47/72 (65%), Gaps = 1/72 (1%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           +GL E   R    YSGG +R+L  A +L+  P ++FLDEPT G+DP +R  +W  + +++
Sbjct: 119 VGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLK 178

Query: 61  KT-GQSIVLTSH 71
           +  G +I+LT+H
Sbjct: 179 EEFGMTILLTTH 190

DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score = 76.9 bits (190), Expect = 7e-20
 Identities = 24/58 (41%), Positives = 43/58 (74%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
           SGG +++++ A AL+ +P L+ LDEPTSG+DP SR RL  +L ++ + G+++++ +H 
Sbjct: 82  SGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHD 139

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit

 Score = 79.0 bits (195), Expect = 1e-19
 Identities = 30/70 (42%), Positives = 46/70 (65%)

Query: 2   GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
            L E   R  G YSGG +R+L  A +LI  P ++FLDEPT+G+DP +R  +W  +  +++
Sbjct: 113 ELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE 172

Query: 62  TGQSIVLTSH 71
            G +I+LT+H
Sbjct: 173 EGVTILLTTH 182

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 72.0 bits (176), Expect = 1e-16
 Identities = 33/70 (47%), Positives = 50/70 (71%), Gaps = 1/70 (1%)

Query: 2    GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
            GL   R+ E+   SGG +RKLS A+A +GD  +V LDEPTSGVDP SR  +W +L +  +
Sbjct: 1050 GLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY-R 1108

Query: 62   TGQSIVLTSH 71
            +G++I++++H
Sbjct: 1109 SGRTIIMSTH 1118

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component

 Score = 69.9 bits (172), Expect = 1e-16
 Identities = 25/70 (35%), Positives = 46/70 (65%), Gaps = 1/70 (1%)

Query: 2   GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
            L +   ++ G  SGG +R++  A AL+GDP ++ +DEPT+G+DP  R R   +LS++ +
Sbjct: 119 NLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE 178

Query: 62  TGQSIVLTSH 71
             + ++L++H
Sbjct: 179 D-RIVILSTH 187

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters

 Score = 67.9 bits (167), Expect = 6e-16
 Identities = 26/71 (36%), Positives = 49/71 (69%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           +GL+E   R+ G  SGG ++++  A AL+ DP L+ LDEP +GVDP ++  ++ +L +++
Sbjct: 120 VGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELR 179

Query: 61  KTGQSIVLTSH 71
           + G +I++ +H
Sbjct: 180 REGMTILVVTH 190

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213

>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 68.0 bits (167), Expect = 1e-15
 Identities = 23/71 (32%), Positives = 47/71 (66%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           +G+ + R R+ G  SGG K+++  A AL  +P L+ LDEP +GVD   +  ++ +L +++
Sbjct: 127 VGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR 186

Query: 61  KTGQSIVLTSH 71
           + G+++++ +H
Sbjct: 187 QEGKTVLMVTH 197

Length = 254

>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional

 Score = 68.7 bits (168), Expect = 1e-15
 Identities = 30/57 (52%), Positives = 42/57 (73%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
           SGG KR+L+ A ALI DP L+ LDEPT+G+DP +RH +W  L  +   G++I+LT+H
Sbjct: 174 SGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH 230

Length = 340

>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional

 Score = 68.3 bits (167), Expect = 1e-15
 Identities = 29/60 (48%), Positives = 43/60 (71%)

Query: 12  GRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
           G  SGG KR+L+ A AL+ DP ++ LDEPT+G+DP +RH +W  L  +   G++I+LT+H
Sbjct: 137 GELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTH 196

Length = 306

>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI

 Score = 67.3 bits (164), Expect = 3e-15
 Identities = 30/57 (52%), Positives = 42/57 (73%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
           SGG KR+L+ A ALI DP L+ LDEPT+G+DP +RH +W  L  +   G++I+LT+H
Sbjct: 137 SGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH 193

This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303

>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system

 Score = 65.9 bits (162), Expect = 4e-15
 Identities = 24/72 (33%), Positives = 42/72 (58%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           +GL +   R +G  S G +R+L  A AL  DP L+ LDEP +G++P     L  ++ +++
Sbjct: 131 VGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELR 190

Query: 61  KTGQSIVLTSHR 72
           + G +++L  H 
Sbjct: 191 ERGITVLLVEHD 202

The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236

>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter

 Score = 64.5 bits (158), Expect = 9e-15
 Identities = 24/70 (34%), Positives = 45/70 (64%)

Query: 2   GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
           GL +   ++   +S G K++L  A+AL+G+P L+ LDEPT+G+DP     L  ++  ++ 
Sbjct: 115 GLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD 174

Query: 62  TGQSIVLTSH 71
            G +++++SH
Sbjct: 175 QGITVLISSH 184

The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208

>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 64.6 bits (158), Expect = 1e-14
 Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI- 59
           +GL E   R     SGG K++++ A  L   P ++ LDEPT+G+DP  R  L  +L ++ 
Sbjct: 126 VGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLK 185

Query: 60  QKTGQSIVLTSHR 72
           ++ G++I++ +H 
Sbjct: 186 EEGGKTIIIVTHD 198

Length = 235

>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily

 Score = 63.7 bits (156), Expect = 2e-14
 Identities = 23/58 (39%), Positives = 43/58 (74%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
           SGG ++++S A+ L+ +P L+FLDEPTSG+D  S  ++ ++L ++  TG++I+ + H+
Sbjct: 113 SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQ 170

ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score = 63.4 bits (155), Expect = 5e-14
 Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           +GL     R     SGG ++++  A AL  + P++ LDEPTS +D   +  +  +L  + 
Sbjct: 126 LGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLN 185

Query: 61  KT-GQSIVLTSH 71
           +  G ++V+  H
Sbjct: 186 REKGLTVVMVLH 197

Length = 258

>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

 Score = 61.7 bits (150), Expect = 2e-13
 Identities = 27/71 (38%), Positives = 46/71 (64%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           + L EY  R  G +S G K+K++ A AL+ DP ++ LDEPTSG+D  +R +    + Q++
Sbjct: 121 LQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLK 180

Query: 61  KTGQSIVLTSH 71
             G++++ +SH
Sbjct: 181 NEGRAVIFSSH 191

Length = 245

>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 61.4 bits (150), Expect = 2e-13
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           +GL E   R +G  S G +R+L  A AL   P L+ LDEP +G++P     L  ++ +++
Sbjct: 137 VGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELR 196

Query: 61  KT-GQSIVLTSHR 72
              G +I+L  H 
Sbjct: 197 DRGGVTILLIEHD 209

Length = 250

>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter

 Score = 60.1 bits (147), Expect = 5e-13
 Identities = 22/66 (33%), Positives = 39/66 (59%)

Query: 3   LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT 62
           L E R + +G  SGG ++ L+ A AL+  P L+ LDEP+ G+ P     ++  + +++  
Sbjct: 122 LKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDE 181

Query: 63  GQSIVL 68
           G +I+L
Sbjct: 182 GVTILL 187

LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222

>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter

 Score = 60.4 bits (147), Expect = 5e-13
 Identities = 25/71 (35%), Positives = 47/71 (66%)

Query: 2   GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
            L+EY ++     S GN++K+    A+I DP L+ LDEP SG+DP++   L  V+ ++ +
Sbjct: 117 ELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELAR 176

Query: 62  TGQSIVLTSHR 72
            G++++L++H+
Sbjct: 177 AGKTVILSTHQ 187

This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score = 59.8 bits (146), Expect = 5e-13
 Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 1/72 (1%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI- 59
           +GL     R     SGG ++++  A AL  +PP++ LDEPTS +D   +  L  +L ++ 
Sbjct: 85  LGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLA 144

Query: 60  QKTGQSIVLTSH 71
           ++ G+++V+  H
Sbjct: 145 RERGKTVVMVLH 156

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit

 Score = 59.7 bits (145), Expect = 7e-13
 Identities = 24/71 (33%), Positives = 47/71 (66%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           +G +  R R +   SGG K++++ A A+   P ++ LDEPT+G+DP  R ++ A+L +++
Sbjct: 115 VGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLR 174

Query: 61  KTGQSIVLTSH 71
             G ++V+++H
Sbjct: 175 AEGMTVVISTH 185

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score = 58.9 bits (144), Expect = 9e-13
 Identities = 21/58 (36%), Positives = 39/58 (67%), Gaps = 1/58 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
           SGG +++++ A AL+ DPP++ LDE TS +DP +   +   L  + K G+++++ +HR
Sbjct: 98  SGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHR 154

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein

 Score = 60.4 bits (147), Expect = 1e-12
 Identities = 24/57 (42%), Positives = 38/57 (66%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
           SGG +++L+ A  L+ DPPL+F DEPTSG+D    + +  VL  + + G++I+ T H
Sbjct: 168 SGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIH 224

[Transport and binding proteins, Other]. Length = 617

>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 60.0 bits (146), Expect = 1e-12
 Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 3/74 (4%)

Query: 1   MGL--TEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQ 58
           +GL  +EY  R     SGG ++++  A AL  DPP++ +DEP   +DPI+R +L   + +
Sbjct: 121 VGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKE 180

Query: 59  IQKT-GQSIVLTSH 71
           +QK  G++IV  +H
Sbjct: 181 LQKELGKTIVFVTH 194

Length = 309

>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system

 Score = 58.8 bits (143), Expect = 2e-12
 Identities = 21/71 (29%), Positives = 41/71 (57%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           + L   + R     SGG K++L+ A AL+    L+  DEPTSG+D  +  R+  ++ ++ 
Sbjct: 114 LDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELA 173

Query: 61  KTGQSIVLTSH 71
             G+++++ +H
Sbjct: 174 AQGKAVIVITH 184

Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205

>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

 Score = 58.2 bits (141), Expect = 3e-12
 Identities = 25/70 (35%), Positives = 44/70 (62%)

Query: 2   GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
            LT    +++ ++S G K++L  A+AL+  P L+ LDEPT+G+DPI    L  ++    +
Sbjct: 113 DLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE 172

Query: 62  TGQSIVLTSH 71
            G +++L+SH
Sbjct: 173 QGITVILSSH 182

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223

>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily

 Score = 58.1 bits (141), Expect = 4e-12
 Identities = 26/70 (37%), Positives = 41/70 (58%)

Query: 2   GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
            LT          SGG +R++S A+ L+ DP ++ LDEPTSG+D  +   L + LSQ+ +
Sbjct: 132 ALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR 191

Query: 62  TGQSIVLTSH 71
             + ++LT H
Sbjct: 192 RNRIVILTIH 201

The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226

>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter

 Score = 57.4 bits (139), Expect = 6e-12
 Identities = 25/72 (34%), Positives = 46/72 (63%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           +G+ E   R  G +S G ++K++ A AL+ DPP++ LDEPT+G+D ++   L   + Q++
Sbjct: 124 LGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLR 183

Query: 61  KTGQSIVLTSHR 72
             G+ I+ ++H 
Sbjct: 184 ALGKCILFSTHI 195

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218

>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems

 Score = 56.4 bits (137), Expect = 8e-12
 Identities = 25/58 (43%), Positives = 40/58 (68%), Gaps = 1/58 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSH 71
           SGG +++++ A AL  DP ++ LDEPTS +DPI+R  + A+L  +Q   G ++VL +H
Sbjct: 102 SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTH 159

This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178

>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system

 Score = 56.8 bits (138), Expect = 1e-11
 Identities = 22/70 (31%), Positives = 40/70 (57%)

Query: 2   GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
            +T  R  ++   SGG +R++  A AL  +P  + LDEP +GVDPI+   +  ++  ++ 
Sbjct: 122 HITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD 181

Query: 62  TGQSIVLTSH 71
            G  +++T H
Sbjct: 182 RGIGVLITDH 191

The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232

>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 56.8 bits (138), Expect = 1e-11
 Identities = 21/72 (29%), Positives = 43/72 (59%), Gaps = 1/72 (1%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI- 59
           +GL  +  +   + SGG +++++ A AL   P L+ LDEP   +D ++R  L   L ++ 
Sbjct: 118 VGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLW 177

Query: 60  QKTGQSIVLTSH 71
           ++T ++++L +H
Sbjct: 178 EETRKTVLLVTH 189

Length = 248

>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 56.7 bits (137), Expect = 2e-11
 Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 1/58 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSH 71
           SGG  RK++    L  +P ++ LDEPT+G+DP S+ ++  +L  +Q    ++I+L SH
Sbjct: 147 SGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSH 204

Length = 286

>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter

 Score = 56.2 bits (136), Expect = 2e-11
 Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 5   EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-G 63
           E+  R     SGG ++++  A AL  DPPL+ +DEP   +DPI+R +L     ++Q+  G
Sbjct: 127 EFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELG 186

Query: 64  QSIVLTSH 71
           ++IV  +H
Sbjct: 187 KTIVFVTH 194

OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242

>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit

 Score = 56.4 bits (136), Expect = 2e-11
 Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 1/72 (1%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           +GL EY HR     SGG ++++  A AL  +P ++ +DE  S +DP+ R  +   L ++Q
Sbjct: 117 VGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQ 176

Query: 61  KT-GQSIVLTSH 71
            T  ++IV  +H
Sbjct: 177 ATLQKTIVFITH 188

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363

>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents

 Score = 56.0 bits (136), Expect = 3e-11
 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 2   GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
           GL           SGG K++++ A AL  DP L+  DEPT+G+DPI+   +  ++  ++K
Sbjct: 125 GLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKK 184

Query: 62  T-GQSIVLTSH 71
             G + ++ +H
Sbjct: 185 ELGLTSIMVTH 195

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

 Score = 55.8 bits (135), Expect = 3e-11
 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI- 59
           +G      R  G  S G +R++  A AL+ DP L+ LDEP  G+D I+R +L   L ++ 
Sbjct: 159 LGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELA 218

Query: 60  -QKTGQSIVLTSHR 72
                 +++  +H 
Sbjct: 219 ASPGAPALLFVTHH 232

Length = 257

>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters

 Score = 54.8 bits (133), Expect = 6e-11
 Identities = 24/71 (33%), Positives = 46/71 (64%), Gaps = 1/71 (1%)

Query: 2   GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI-Q 60
           GL+ + +    + SGG +++++ A AL  DP ++ LDEP S +D ++R +L   L  I +
Sbjct: 120 GLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWR 179

Query: 61  KTGQSIVLTSH 71
           +TG++++L +H
Sbjct: 180 ETGKTVLLVTH 190

NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C

 Score = 54.1 bits (131), Expect = 6e-11
 Identities = 19/58 (32%), Positives = 34/58 (58%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
           SGG +++L  A AL G+P ++ LDEP S +D      L   ++ ++  G + ++ +HR
Sbjct: 98  SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHR 155

This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173

>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 54.7 bits (132), Expect = 1e-10
 Identities = 22/71 (30%), Positives = 43/71 (60%)

Query: 2   GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
            +   + ++    S GN++K+    A+I +P L+ LDEP SG+DP++   L   + ++++
Sbjct: 119 EIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKE 178

Query: 62  TGQSIVLTSHR 72
            G +I+ +SHR
Sbjct: 179 EGATIIFSSHR 189

Length = 300

>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 54.7 bits (131), Expect = 1e-10
 Identities = 25/72 (34%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 1   MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI 59
           +GL  E+  +     SGG  R+++ A  L  +P ++ LDEPT+G+DP +R  +  +   I
Sbjct: 131 VGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESI 190

Query: 60  QKTGQSIVLTSH 71
            ++GQ++VL +H
Sbjct: 191 HQSGQTVVLVTH 202

Length = 288

>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional

 Score = 54.1 bits (130), Expect = 1e-10
 Identities = 22/71 (30%), Positives = 47/71 (66%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           + + E+RHR+ G  SGG K+++  A A+     ++ LDEP +GVD  +  R+ ++L +++
Sbjct: 130 VDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELR 189

Query: 61  KTGQSIVLTSH 71
             G+++++++H
Sbjct: 190 DEGKTMLVSTH 200

Length = 272

>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 54.0 bits (131), Expect = 2e-10
 Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 3   LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK- 61
           L E R++ +G  SGG ++ L+ A AL+  P L+ LDEP+ G+ P     ++  + +++K 
Sbjct: 126 LKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKE 185

Query: 62  TGQSIVL 68
            G +I+L
Sbjct: 186 GGMTILL 192

Length = 237

>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein

 Score = 53.6 bits (130), Expect = 2e-10
 Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           +GL +  +      SGG +++++ A AL  DP ++  DEPT  +D  +   +  +L ++ 
Sbjct: 128 VGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELN 187

Query: 61  K-TGQSIVLTSH 71
           K  G +IV+ +H
Sbjct: 188 KEAGTTIVVVTH 199

This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218

>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 54.3 bits (131), Expect = 2e-10
 Identities = 26/60 (43%), Positives = 42/60 (70%), Gaps = 1/60 (1%)

Query: 13  RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
           R SGG +R+L+ A AL+ D PL  LDEPT G+DPI+  ++ A+L +    G+++++ +HR
Sbjct: 474 RLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFE-HAEGKTLLMVTHR 532

Length = 573

>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like

 Score = 53.3 bits (129), Expect = 2e-10
 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           +GL    +R     SGG +++++ A AL  +P L+ LDEP S +D   R  L   L ++Q
Sbjct: 118 VGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQ 177

Query: 61  K-TGQSIVLTSH 71
           +  G + +  +H
Sbjct: 178 RELGITTIYVTH 189

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213

>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C

 Score = 52.7 bits (127), Expect = 3e-10
 Identities = 22/60 (36%), Positives = 42/60 (70%), Gaps = 1/60 (1%)

Query: 13  RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
           R+SGG +++L+ A  L+ D P+V LDEPT G+DPI+  +L +++ ++ K  ++++  +H 
Sbjct: 98  RFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLK-DKTLIWITHH 156

The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178

>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter

 Score = 52.7 bits (127), Expect = 3e-10
 Identities = 19/61 (31%), Positives = 38/61 (62%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           +G+    +R+    SGG +++++ A AL+ +P ++ LDEP S +D  ++ +L   L +I+
Sbjct: 117 LGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIR 176

Query: 61  K 61
           K
Sbjct: 177 K 177

Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

 Score = 53.0 bits (128), Expect = 4e-10
 Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 1/58 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
           SGG +++L+ A AL+  P ++ LDE TS +DP +   +   L QI   G+++++ +HR
Sbjct: 611 SGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHR 667

Length = 709

>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 53.0 bits (128), Expect = 4e-10
 Identities = 19/59 (32%), Positives = 38/59 (64%), Gaps = 1/59 (1%)

Query: 14  YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSH 71
            SGG ++++  AMAL  +P L+  DEPT+ +D   + ++  +L ++Q+  G +++L +H
Sbjct: 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITH 212

Length = 316

>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 53.2 bits (128), Expect = 4e-10
 Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 13  RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSH 71
           + S G + +   A AL+  P ++FLDEPT G+D  ++  +   L +  ++   +++LT+H
Sbjct: 156 KLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTH 215

Length = 325

>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 53.0 bits (128), Expect = 4e-10
 Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 2   GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
           GL++   R   + SGG K++++ A AL  +P ++  DE TS +DP +   +  +L  I +
Sbjct: 130 GLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINR 189

Query: 62  T-GQSIVLTSH 71
             G +IVL +H
Sbjct: 190 ELGLTIVLITH 200

Length = 339

>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 52.6 bits (127), Expect = 4e-10
 Identities = 22/58 (37%), Positives = 40/58 (68%), Gaps = 1/58 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSH 71
           SGG +++++ A A+  DP L+FLDEPTSG+DPIS   +  ++ ++    G ++++ +H
Sbjct: 147 SGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTH 204

Length = 263

>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group

 Score = 52.2 bits (126), Expect = 5e-10
 Identities = 21/71 (29%), Positives = 43/71 (60%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           +GL     ++    SGG +++++ A A++  PPL+  DEPT  +DP +R  +  +L ++ 
Sbjct: 122 VGLNLKLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELN 181

Query: 61  KTGQSIVLTSH 71
             G++I++ +H
Sbjct: 182 DEGKTIIIVTH 192

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206

>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 52.1 bits (126), Expect = 6e-10
 Identities = 17/58 (29%), Positives = 38/58 (65%), Gaps = 1/58 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSH 71
           SGG +++++ A ALI +P ++  DEPT  +D  +   +  +L ++ ++ G++I++ +H
Sbjct: 144 SGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTH 201

Length = 226

>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters

 Score = 52.1 bits (126), Expect = 7e-10
 Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 3   LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK- 61
           L  Y H      SGG +++++ A AL  +P L+  DEPTS +D   + ++  +L ++Q+ 
Sbjct: 139 LNRYPHE----LSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEE 194

Query: 62  TGQSIVLTSH 71
            G +++  +H
Sbjct: 195 LGLTLLFITH 204

The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228

>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system

 Score = 52.1 bits (125), Expect = 7e-10
 Identities = 20/72 (27%), Positives = 41/72 (56%), Gaps = 1/72 (1%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI- 59
           +GL     R  G  SGG +++++ A  L+ D P++ LDEP + +DP  R  +  ++  + 
Sbjct: 116 VGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLH 175

Query: 60  QKTGQSIVLTSH 71
            +T  ++++ +H
Sbjct: 176 AETKMTVLMVTH 187

Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional

 Score = 52.0 bits (125), Expect = 1e-09
 Identities = 22/67 (32%), Positives = 36/67 (53%)

Query: 5   EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQ 64
            Y  R     SGG KR+++ A  L  +P  +  DEPT+G+DP     +  +   + K G+
Sbjct: 157 SYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGK 216

Query: 65  SIVLTSH 71
           +I+L +H
Sbjct: 217 TIILVTH 223

Length = 305

>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 51.7 bits (124), Expect = 1e-09
 Identities = 24/72 (33%), Positives = 43/72 (59%), Gaps = 1/72 (1%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           +GL E R R     SGG K++++ A  +  +P ++ LDEPT+G+DP     L   L+ + 
Sbjct: 125 LGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLP 184

Query: 61  KT-GQSIVLTSH 71
           +T G +++ ++H
Sbjct: 185 ETYGMTVIFSTH 196

Length = 277

>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 51.7 bits (124), Expect = 1e-09
 Identities = 22/57 (38%), Positives = 37/57 (64%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
           SGG  R+++ A  L  +P ++ LDEPT+G+DP  R  L  +  ++ ++G +IVL +H
Sbjct: 147 SGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTH 203

Length = 280

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 51.4 bits (124), Expect = 2e-09
 Identities = 18/58 (31%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSH 71
           SGG ++++  AMAL   P L+  DEPT+ +D  ++ ++  +L  +Q + G +++  +H
Sbjct: 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITH 213

Length = 539

>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 51.4 bits (123), Expect = 2e-09
 Identities = 19/57 (33%), Positives = 34/57 (59%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
           SGG  R+++ A  +  +P ++ LDEP +G+DP  R  +  +    QK G +++L +H
Sbjct: 147 SGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTH 203

Length = 287

>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 50.8 bits (122), Expect = 2e-09
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 2   GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
           GL  Y  +     SGG ++++  A AL  DP ++ +DE  S +DP+ R  +   L ++Q 
Sbjct: 153 GLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQA 212

Query: 62  T-GQSIVLTSH 71
              ++IV  +H
Sbjct: 213 KLKKTIVFITH 223

Length = 386

>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family

 Score = 51.0 bits (123), Expect = 3e-09
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 10/68 (14%)

Query: 10  ESGR-YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPIS----RHRLWAVLSQIQKTGQ 64
           E GR  SGG ++ ++ A AL+ DPP++ LDEPTS +D  S    + RL   L+     G+
Sbjct: 597 ERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-----GK 651

Query: 65  SIVLTSHR 72
           ++VL +HR
Sbjct: 652 TLVLVTHR 659

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694

>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter

 Score = 50.3 bits (121), Expect = 3e-09
 Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 2   GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI-Q 60
           GL +       + SGG K+++  A AL  +P ++  DE TS +DP +   + A+L  I +
Sbjct: 129 GLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINR 188

Query: 61  KTGQSIVLTSH 71
           + G +IVL +H
Sbjct: 189 ELGLTIVLITH 199

MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233

>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional

 Score = 50.6 bits (121), Expect = 3e-09
 Identities = 22/58 (37%), Positives = 39/58 (67%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
           SGG ++++S A  ++ +P L+ LDEPTSG+D  + +RL   L  + + G++IV + H+
Sbjct: 208 SGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQ 265

Length = 659

>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein

 Score = 50.2 bits (120), Expect = 4e-09
 Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 2   GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
           GL ++  R+ G  SGG ++++  A A   + P++ +DEP S +DP+ R +L   L ++Q 
Sbjct: 153 GLAQWADRKPGELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQS 212

Query: 62  T-GQSIVLTSH 71
              ++IV  SH
Sbjct: 213 KLKKTIVFVSH 223

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382

>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family

 Score = 50.4 bits (121), Expect = 4e-09
 Identities = 22/58 (37%), Positives = 35/58 (60%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
           SGG +++++ A AL GDP LV LDEP S +D      L   +  ++  G ++V+ +HR
Sbjct: 456 SGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHR 513

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544

>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein

 Score = 49.9 bits (119), Expect = 4e-09
 Identities = 20/72 (27%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI- 59
           +G+ +Y  R   + SGG +++++ A  L+   P++ LDEP S +DP+ R  + A++ Q+ 
Sbjct: 116 VGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLC 175

Query: 60  QKTGQSIVLTSH 71
            +  +++++ +H
Sbjct: 176 SERQRTLLMVTH 187

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213

>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]

 Score = 49.5 bits (119), Expect = 5e-09
 Identities = 19/47 (40%), Positives = 29/47 (61%)

Query: 2   GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPIS 48
            +T  R  ++   SGG +R++  A AL  +P  + LDEP +GVDPI+
Sbjct: 128 HITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIA 174

Length = 243

>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 49.7 bits (119), Expect = 6e-09
 Identities = 22/70 (31%), Positives = 43/70 (61%)

Query: 2   GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
           G+  + ++     SGG K++++ A  L   P ++ LDEPTSG+DP+   ++  +L  + K
Sbjct: 126 GMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK 185

Query: 62  TGQSIVLTSH 71
            G +I++++H
Sbjct: 186 EGITIIISTH 195

Length = 275

>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system

 Score = 49.6 bits (119), Expect = 6e-09
 Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 1/72 (1%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           +GL  + H+     SGG ++++  A AL  DP ++ +DE  S +DP+ R  +   L ++Q
Sbjct: 148 VGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQ 207

Query: 61  -KTGQSIVLTSH 71
            +  ++IV  +H
Sbjct: 208 AELQKTIVFITH 219

This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269

>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE

 Score = 49.2 bits (118), Expect = 7e-09
 Identities = 21/71 (29%), Positives = 41/71 (57%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           +GL         + SGG +++++ A A++  PPL+  DEPT  +DP    R+  +L ++ 
Sbjct: 125 VGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLN 184

Query: 61  KTGQSIVLTSH 71
           K G ++++ +H
Sbjct: 185 KRGTTVIVATH 195

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214

>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional

 Score = 49.5 bits (118), Expect = 7e-09
 Identities = 21/57 (36%), Positives = 36/57 (63%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
           SGG +R++  A AL  +P  + LDEP +GVDPIS   +  ++  ++ +G  +++T H
Sbjct: 139 SGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDH 195

Length = 241

>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 49.6 bits (118), Expect = 7e-09
 Identities = 22/66 (33%), Positives = 41/66 (62%)

Query: 6   YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQS 65
           +RH+     S G K++++ A AL+     + LDEPT+G+DP  R ++ A++ +I   G  
Sbjct: 129 FRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNH 188

Query: 66  IVLTSH 71
           ++++SH
Sbjct: 189 VIISSH 194

Length = 271

>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 49.0 bits (117), Expect = 9e-09
 Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 1/71 (1%)

Query: 2   GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI-Q 60
           GL    H+   + SGG ++++  A AL  +P L+ LDEP   +D ++R ++  +L  + Q
Sbjct: 121 GLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQ 180

Query: 61  KTGQSIVLTSH 71
           +TG+ ++L +H
Sbjct: 181 ETGKQVLLITH 191

Length = 259

>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

 Score = 48.8 bits (117), Expect = 9e-09
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 2   GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQ-IQ 60
           GL E    +    +GG++R++  A AL+  P L+ LDEPT G+DP SR  + A +    +
Sbjct: 121 GLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALAR 180

Query: 61  KTGQSIVLTSH 71
             G S++  +H
Sbjct: 181 DQGLSVLWATH 191

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 49.3 bits (118), Expect = 9e-09
 Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 1/68 (1%)

Query: 5   EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQ 64
           E RHR    +SGG +++++ A ALI  P L+ LDEPTS +D   + ++ A+L  +Q+  Q
Sbjct: 417 ETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQ 476

Query: 65  -SIVLTSH 71
            + +  SH
Sbjct: 477 LAYLFISH 484

Length = 529

>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 48.7 bits (116), Expect = 1e-08
 Identities = 23/66 (34%), Positives = 40/66 (60%)

Query: 3   LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT 62
           L E R + +G  SGG ++ L+   AL+  P L+ LDEP+ G+ PI   +++  + Q+++ 
Sbjct: 127 LHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQ 186

Query: 63  GQSIVL 68
           G +I L
Sbjct: 187 GMTIFL 192

Length = 237

>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit

 Score = 48.7 bits (116), Expect = 1e-08
 Identities = 24/70 (34%), Positives = 41/70 (58%)

Query: 2   GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
           GLTE   R  G  SGG ++++  A AL   P ++ LDEP +G+D  ++  L  +  ++  
Sbjct: 102 GLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAG 161

Query: 62  TGQSIVLTSH 71
            G +I++T+H
Sbjct: 162 AGTAILMTTH 171

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223

>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed

 Score = 48.9 bits (117), Expect = 1e-08
 Identities = 25/70 (35%), Positives = 40/70 (57%)

Query: 2   GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
           GL E  H      SGG +++++ A AL   P L+  DEPTS +DP  RH +  V+  + +
Sbjct: 125 GLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE 184

Query: 62  TGQSIVLTSH 71
            G ++V+ +H
Sbjct: 185 EGMTMVIVTH 194

Length = 240

>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters

 Score = 48.4 bits (116), Expect = 1e-08
 Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 13/73 (17%)

Query: 9   RESGRYSG-------GNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
           RE+ R+S          +++L+  + L   P ++FLDEPTSG+D  +    + ++  ++K
Sbjct: 97  REALRFSALLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAA---YNIVRFLKK 153

Query: 62  ---TGQSIVLTSH 71
              +GQ+I+ T H
Sbjct: 154 LADSGQAILCTIH 166

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192

>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL

 Score = 48.5 bits (116), Expect = 1e-08
 Identities = 16/58 (27%), Positives = 36/58 (62%)

Query: 14  YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
           +SGG +++++ A   I D P++ LDEPT+ +D  +R  +  ++++ +  G +++   H
Sbjct: 150 FSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFH 207

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224

>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA

 Score = 48.6 bits (116), Expect = 1e-08
 Identities = 26/70 (37%), Positives = 45/70 (64%), Gaps = 1/70 (1%)

Query: 2   GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
           GL   +H++ G+ S G ++++  A ALI DP ++ LDEPT+G+DP     +  V+  I K
Sbjct: 122 GLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK 181

Query: 62  TGQSIVLTSH 71
             ++I+L++H
Sbjct: 182 D-KTIILSTH 190

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301

>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE

 Score = 48.3 bits (116), Expect = 2e-08
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 11/72 (15%)

Query: 3   LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDP-----ISRHRLWAVLS 57
           L E   R  G  SGG +++L+ A AL+  P L+ LDEPT G+ P     I R     V+ 
Sbjct: 121 LKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGR-----VIR 175

Query: 58  QIQK-TGQSIVL 68
           +++   G +I+L
Sbjct: 176 RLRAEGGMAILL 187

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230

>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter

 Score = 46.9 bits (112), Expect = 2e-08
 Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 1   MGLTEYRHRESGR-YSGGNKRKLSTAMALIGDPPLVFLDEPTS 42
           +GL ++  RE     SGG K++++ A AL+  P L+ LDEPT+
Sbjct: 77  VGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLLLDEPTA 119

ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 48.6 bits (116), Expect = 2e-08
 Identities = 19/58 (32%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
           SGG +++L+ A AL+ +PP++ LDE TS +D  +   +   L ++ K   ++++  HR
Sbjct: 467 SGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIA-HR 523

Length = 567

>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

 Score = 48.1 bits (115), Expect = 2e-08
 Identities = 22/72 (30%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI- 59
           +GL  +  R  G  SGG +++++ A  L+ + P++ LDEP S +DP  R  + A++SQ+ 
Sbjct: 117 VGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLC 176

Query: 60  QKTGQSIVLTSH 71
            +   ++++ +H
Sbjct: 177 DERKMTLLMVTH 188

Length = 231

>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein

 Score = 47.9 bits (114), Expect = 2e-08
 Identities = 22/71 (30%), Positives = 36/71 (50%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           +GL  +  R   + S G +R+++ A  L+   PL  LDEPT+ +D     R    ++   
Sbjct: 113 VGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHC 172

Query: 61  KTGQSIVLTSH 71
             G  +VLT+H
Sbjct: 173 ARGGMVVLTTH 183

CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201

>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 48.3 bits (116), Expect = 2e-08
 Identities = 24/64 (37%), Positives = 42/64 (65%), Gaps = 2/64 (3%)

Query: 10  ESGR-YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVL 68
           E GR  SGG +R+L  A AL+ D PL+ LDEPT G+D  +  ++  +L++  +  +++++
Sbjct: 471 EGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQ-NKTVLM 529

Query: 69  TSHR 72
            +HR
Sbjct: 530 ITHR 533

Length = 574

>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters

 Score = 47.9 bits (115), Expect = 2e-08
 Identities = 20/70 (28%), Positives = 39/70 (55%)

Query: 2   GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
           GL +       + SGG +++++ A AL  +P ++  DEPTS +DP     +  V+  + +
Sbjct: 124 GLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE 183

Query: 62  TGQSIVLTSH 71
            G ++V+ +H
Sbjct: 184 EGMTMVVVTH 193

HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213

>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 48.0 bits (114), Expect = 2e-08
 Identities = 22/57 (38%), Positives = 38/57 (66%), Gaps = 1/57 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
           SGG +++L  A AL  +P ++ LDEPTS +DPI+  R+  +L ++ +   +IV+ +H
Sbjct: 148 SGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSEN-YTIVIVTH 203

Length = 250

>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA

 Score = 47.7 bits (114), Expect = 2e-08
 Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSH 71
           S G + +   A AL+ +P ++FLDEPT G+D +++  +   L +  +  G +++LTSH
Sbjct: 155 SLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSH 212

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236

>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional

 Score = 48.1 bits (115), Expect = 3e-08
 Identities = 23/59 (38%), Positives = 39/59 (66%)

Query: 12  GRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70
           G  SGGN++K++ A  L+  P ++ LDEPT GVD  ++  ++ +++Q +  G SI+L S
Sbjct: 394 GLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVS 452

Length = 501

>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter

 Score = 47.6 bits (114), Expect = 3e-08
 Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 1/72 (1%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           + L  Y +R+  + SGG +++++ A AL+ +P ++ LDEP   +D   R  +   L ++Q
Sbjct: 118 VQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQ 177

Query: 61  K-TGQSIVLTSH 71
           K  G + V  +H
Sbjct: 178 KELGITFVFVTH 189

PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232

>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein

 Score = 48.0 bits (114), Expect = 3e-08
 Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           +GL +         SGG K++++ A AL  +P ++  DE TS +DP +   +  +L +I 
Sbjct: 128 VGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEIN 187

Query: 61  KT-GQSIVLTSH 71
           +  G +I+L +H
Sbjct: 188 RRLGLTILLITH 199

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343

>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system

 Score = 47.3 bits (113), Expect = 3e-08
 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           +GL    +R   + SGG K++++ A AL   P L+ LDEP S +D   R +L   L QI+
Sbjct: 119 LGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIK 178

Query: 61  KT-GQSIVLTSH 71
           K     ++  +H
Sbjct: 179 KNLNIPVIFVTH 190

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 47.6 bits (114), Expect = 4e-08
 Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 1/68 (1%)

Query: 5   EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTG 63
           E+  R     SGG +++++ A AL  +P L+ LDEP S +D   + ++  +L  +Q + G
Sbjct: 421 EFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELG 480

Query: 64  QSIVLTSH 71
            + +  SH
Sbjct: 481 LTYLFISH 488

Length = 539

>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C

 Score = 47.2 bits (113), Expect = 4e-08
 Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 2/65 (3%)

Query: 9   RESGR-YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIV 67
            E GR  SGG ++ ++ A AL+ DPP++ LDEPTS +D  S  RL   L Q+    ++++
Sbjct: 135 GERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQL-LGDKTLI 193

Query: 68  LTSHR 72
           + +HR
Sbjct: 194 IITHR 198

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220

>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit

 Score = 47.3 bits (113), Expect = 5e-08
 Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
           SGG  ++L+ A A + D PL+ LDEPT+ +D  +   +   L  + + G++++L +HR
Sbjct: 460 SGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQ-GRTVLLVTHR 516

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 47.3 bits (113), Expect = 5e-08
 Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 2/64 (3%)

Query: 10  ESGR-YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVL 68
           E G   SGG  ++L+ A AL+    L+ LDEPT+ +D  +   +   L ++ K  +++++
Sbjct: 452 EGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLV 510

Query: 69  TSHR 72
            +HR
Sbjct: 511 ITHR 514

Length = 559

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 47.1 bits (112), Expect = 5e-08
 Identities = 22/59 (37%), Positives = 41/59 (69%)

Query: 12  GRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70
           GR SGGN++K   A  L+ +P ++ LDEPT GVD  +++ ++ +++Q+ + G +I++ S
Sbjct: 402 GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVS 460

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 46.9 bits (112), Expect = 5e-08
 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 2   GLTE-YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           GL E    R     SGG  R+++ A  L  +P ++ LDEPT+G+DP  R  +  +  ++ 
Sbjct: 133 GLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLH 192

Query: 61  KT-GQSIVLTSH 71
           K  G + VL +H
Sbjct: 193 KEKGLTTVLVTH 204

Length = 290

>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 47.0 bits (112), Expect = 5e-08
 Identities = 18/70 (25%), Positives = 40/70 (57%)

Query: 2   GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
            + ++R +     S G K++++ A  L  DP ++ LDEP + +DP  +  L  +L ++  
Sbjct: 127 RMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN 186

Query: 62  TGQSIVLTSH 71
            G+++++ +H
Sbjct: 187 QGKTVIVATH 196

Length = 274

>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 47.3 bits (112), Expect = 5e-08
 Identities = 20/64 (31%), Positives = 39/64 (60%), Gaps = 1/64 (1%)

Query: 8   HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIV 67
           H  +   SGG +++L  A  L   P ++ LDEP S +DPIS  ++  +++++++   SI+
Sbjct: 159 HSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEE-YSII 217

Query: 68  LTSH 71
           + +H
Sbjct: 218 IVTH 221

Length = 268

>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional

 Score = 47.0 bits (112), Expect = 6e-08
 Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 2   GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI-Q 60
           GL     R   + SGG ++++  A AL  +P L+ LDEP   +D  +R ++  +L ++ Q
Sbjct: 117 GLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQ 176

Query: 61  KTGQSIVLTSH 71
           +TG+ ++L +H
Sbjct: 177 ETGKQVLLITH 187

Length = 255

>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter

 Score = 46.6 bits (111), Expect = 6e-08
 Identities = 18/57 (31%), Positives = 36/57 (63%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
           SGG +++++ A A++  P ++  DEPT  +DP +   +  +L +I K G ++V+ +H
Sbjct: 138 SGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATH 194

FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214

>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 46.8 bits (111), Expect = 7e-08
 Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 1   MGLTE-YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI 59
           MGL + Y  R     SGG KR+++ A  L   P ++  DEPT+G+DP   H +  ++   
Sbjct: 163 MGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDA 222

Query: 60  QKTGQSIVLTSH 71
           +   +++ + +H
Sbjct: 223 KANNKTVFVITH 234

Length = 320

>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 46.5 bits (111), Expect = 8e-08
 Identities = 19/72 (26%), Positives = 43/72 (59%), Gaps = 1/72 (1%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           +GL E+ +R++G  + G +R+L  A  ++  P ++ LDEP +G++P     L  ++++++
Sbjct: 141 VGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELR 200

Query: 61  KT-GQSIVLTSH 71
                +++L  H
Sbjct: 201 NEHNVTVLLIEH 212

Length = 255

>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 46.4 bits (110), Expect = 8e-08
 Identities = 19/57 (33%), Positives = 39/57 (68%), Gaps = 1/57 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
           SGG +++L  A  +  +P ++ +DEPTS +DPI+ H++  ++ +++K   +IV+ +H
Sbjct: 147 SGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKN-YTIVIVTH 202

Length = 249

>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit

 Score = 46.6 bits (111), Expect = 9e-08
 Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 9/64 (14%)

Query: 13  RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISR----HRLWAVLSQIQKTGQSIVL 68
           R SGG +++L+ A AL+ D P++ LDEPT  +D  +       L A LS     G+++VL
Sbjct: 471 RLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALS-----GRTVVL 525

Query: 69  TSHR 72
            +H 
Sbjct: 526 ITHH 529

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530

>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA

 Score = 45.8 bits (109), Expect = 9e-08
 Identities = 22/71 (30%), Positives = 36/71 (50%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           +GLT +    + + S G +R+L+ A   +   PL  LDEPT+ +D      L  +L    
Sbjct: 115 VGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHL 174

Query: 61  KTGQSIVLTSH 71
             G  ++LT+H
Sbjct: 175 ARGGIVLLTTH 185

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198

>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system

 Score = 46.0 bits (110), Expect = 1e-07
 Identities = 22/57 (38%), Positives = 40/57 (70%), Gaps = 1/57 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
           SGG +++L  A AL  +P ++ LDEPTS +DPIS  ++  ++++++K   +IV+ +H
Sbjct: 143 SGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTH 198

Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227

>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 46.2 bits (110), Expect = 1e-07
 Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSH 71
           SGG KR+++ A  +  +P ++ LDEPT+G+DP  R  +   + ++ K    +I+L SH
Sbjct: 146 SGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSH 203

Length = 287

>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

 Score = 46.1 bits (110), Expect = 1e-07
 Identities = 23/58 (39%), Positives = 35/58 (60%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
           SGG +++++ A AL GDP LV LDEP S +D      L A +   +  G ++V+ +HR
Sbjct: 474 SGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHR 531

Length = 580

>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 46.1 bits (110), Expect = 1e-07
 Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query: 5   EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQ 64
            +  R     SGG +++++ A ALI +P L+ LDEPTS +D   + ++  +L +++K   
Sbjct: 133 SFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERG 192

Query: 65  -SIVLTSH 71
            + +  SH
Sbjct: 193 LTYLFISH 200

Length = 252

>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional

 Score = 46.1 bits (110), Expect = 1e-07
 Identities = 20/59 (33%), Positives = 40/59 (67%)

Query: 12  GRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70
            R SGGN++K   A  L+ +P ++ LDEPT G+D  +++ ++ +++Q+ + G +I++ S
Sbjct: 404 ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVIS 462

Length = 506

>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

 Score = 45.6 bits (109), Expect = 1e-07
 Identities = 20/70 (28%), Positives = 39/70 (55%)

Query: 2   GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
           GL +       + SGG +++++ A AL  DP ++  DEPTS +DP     +  V+  + +
Sbjct: 125 GLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE 184

Query: 62  TGQSIVLTSH 71
            G ++++ +H
Sbjct: 185 EGMTMIIVTH 194

Length = 240

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 45.9 bits (109), Expect = 2e-07
 Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 7/57 (12%)

Query: 19  KRKLSTAMALIGDPP-LVFLDEPTSGVDPISRHRLWAVLSQIQK---TGQSIVLTSH 71
           +++L+  + L+  P  L+FLDEPTSG+D  +    W++   ++K    GQ+I+ T H
Sbjct: 907 RKRLTIGVELVAKPKLLLFLDEPTSGLDSQTA---WSICKLMRKLADHGQAILCTIH 960

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C

 Score = 45.3 bits (108), Expect = 2e-07
 Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 1/58 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
           SGG +++++ A AL+ DPP++ LDE TS +D  S   + A L ++ K   + V+ +HR
Sbjct: 140 SGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVI-AHR 196

MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234

>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 45.3 bits (107), Expect = 2e-07
 Identities = 20/61 (32%), Positives = 39/61 (63%), Gaps = 1/61 (1%)

Query: 11  SGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70
           +G+ SGG +++L  A AL   P ++  DEPT+ +DP +  ++ ++  +++K   +IVL +
Sbjct: 144 AGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKD-MTIVLVT 202

Query: 71  H 71
           H
Sbjct: 203 H 203

Length = 250

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score = 44.4 bits (106), Expect = 2e-07
 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
           SGG K +L+ A  L+ +P L+ LDEPT+ +D  S   L   L +   T   ++L SH
Sbjct: 72  SGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGT---VILVSH 125

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|222036 pfam13304, AAA_21, AAA domain

 Score = 45.5 bits (107), Expect = 2e-07
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 3   LTEYRHRESGRYSGGNKRKLSTAMALI---GDPPLVFLDEPTSGVDPISRHRLWAVLSQI 59
           L           S G KR L+  +AL+       L+ +DEP +G+ P    +L  +L ++
Sbjct: 179 LLRLLKLLIKGISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKEL 238

Query: 60  QKTGQSIVLTSH 71
            + G  ++ T+H
Sbjct: 239 SEKGAQLIFTTH 250

Length = 256

>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional

 Score = 45.4 bits (108), Expect = 2e-07
 Identities = 22/58 (37%), Positives = 35/58 (60%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
           S G  RK     AL+ +P L+ LDEP  G+D  SR +L  +L+ + ++G ++VL  +R
Sbjct: 137 STGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNR 194

Length = 490

>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 45.4 bits (107), Expect = 2e-07
 Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
           SGG +++L  A AL   P L+ LDEPTS +DPIS   +  +L ++     S+++ +H
Sbjct: 144 SGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHN-LSMIMVTH 199

Length = 246

>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 45.3 bits (108), Expect = 2e-07
 Identities = 19/71 (26%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 2   GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI-Q 60
           G+ +  ++ +   SGG +++++ A AL+  P ++  DEP + +DP S  ++  +L  I Q
Sbjct: 136 GILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQ 195

Query: 61  KTGQSIVLTSH 71
           + G ++++  H
Sbjct: 196 EDGITVIVNLH 206

Length = 258

>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 45.0 bits (106), Expect = 3e-07
 Identities = 22/61 (36%), Positives = 36/61 (59%)

Query: 9   RESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVL 68
           R +  +SGG ++++  A AL   P +V LDEPTS +DPIS   +   L +++     I++
Sbjct: 143 RNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMV 202

Query: 69  T 69
           T
Sbjct: 203 T 203

Length = 251

>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 45.0 bits (107), Expect = 3e-07
 Identities = 18/62 (29%), Positives = 35/62 (56%)

Query: 2   GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
           G+ +Y  +E    SGG K++++ A  L  +P ++  DE TS +DP  +  +  ++  ++K
Sbjct: 131 GMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRK 190

Query: 62  TG 63
           T 
Sbjct: 191 TR 192

Length = 271

>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 45.1 bits (106), Expect = 3e-07
 Identities = 22/69 (31%), Positives = 41/69 (59%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           + + +++ RE  R SGG K++++ A  +   P ++ LDE TS +DP  R  +  V+ +I+
Sbjct: 128 VNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIK 187

Query: 61  KTGQSIVLT 69
           +  Q  VL+
Sbjct: 188 EKYQLTVLS 196

Length = 277

>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 44.8 bits (106), Expect = 3e-07
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 2   GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRH--RLWAVLSQI 59
           GL    H++    SGG + +++   AL+  P  + LDEP S +D   R   R W V S++
Sbjct: 123 GLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQW-VFSEV 181

Query: 60  QKTGQSIVLTSH 71
           +  G   V  +H
Sbjct: 182 RAAGIPTVQVTH 193

Length = 213

>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D

 Score = 44.8 bits (106), Expect = 3e-07
 Identities = 24/72 (33%), Positives = 43/72 (59%), Gaps = 1/72 (1%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI- 59
           +GLTE   +  G+ SGG K++++ A AL   P ++ LDEP   +D ++R  L   L QI 
Sbjct: 102 VGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIW 161

Query: 60  QKTGQSIVLTSH 71
           ++   ++++ +H
Sbjct: 162 EEHRVTVLMVTH 173

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230

>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C

 Score = 44.9 bits (107), Expect = 3e-07
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 2   GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
           G         G  S G ++ L+ A A++ DP ++ LDE TS +D  +   +   L ++ K
Sbjct: 128 GYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMK 187

Query: 62  TGQSIVLTSHR 72
              SI++ +HR
Sbjct: 188 GRTSIII-AHR 197

Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229

>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C

 Score = 44.9 bits (107), Expect = 3e-07
 Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
           SGG K++++ A A++ +PP++ LDE TS +D  +   + A L  + K   +IV+  HR
Sbjct: 139 SGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIA-HR 195

ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236

>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 44.8 bits (106), Expect = 3e-07
 Identities = 19/44 (43%), Positives = 27/44 (61%)

Query: 5   EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPIS 48
           EY  R+    SGG  +++S A  L  +P ++ LDEPTS +DP S
Sbjct: 123 EYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTS 166

Length = 241

>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 44.9 bits (106), Expect = 3e-07
 Identities = 19/64 (29%), Positives = 40/64 (62%), Gaps = 1/64 (1%)

Query: 8   HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIV 67
            + + + SGG +++L  A  +   P ++ +DEPTS +DPIS  ++  ++ +++K   +IV
Sbjct: 142 KKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKE-YTIV 200

Query: 68  LTSH 71
           + +H
Sbjct: 201 IVTH 204

Length = 251

>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 45.1 bits (106), Expect = 3e-07
 Identities = 19/57 (33%), Positives = 39/57 (68%), Gaps = 1/57 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
           SGG +++L  A A+  +P ++ +DEPTS +DPI+  ++  ++ +++K   SI++ +H
Sbjct: 227 SGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKK-YSIIIVTH 282

Length = 329

>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein

 Score = 44.6 bits (106), Expect = 3e-07
 Identities = 19/71 (26%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 2   GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI-Q 60
           GL +  ++ + + SGG +++++ A AL   P L+  DEP + +DP +  ++   L +I +
Sbjct: 134 GLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINK 193

Query: 61  KTGQSIVLTSH 71
           + G ++++  H
Sbjct: 194 EDGITVIINLH 204

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243

>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 44.6 bits (105), Expect = 3e-07
 Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 1/57 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
           SGG +++L  A AL  DP ++  DEPTS +DPI+   +  ++S + K   +I++ +H
Sbjct: 163 SGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDL-KNKVTILIVTH 218

Length = 265

>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter

 Score = 44.7 bits (106), Expect = 4e-07
 Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 2/63 (3%)

Query: 10  ESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLT 69
           E    SGG K++++ A AL+ D  ++ LDE TS +D I+  ++   L  +Q   ++I+  
Sbjct: 608 EGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQD--KTIIFV 665

Query: 70  SHR 72
           +HR
Sbjct: 666 AHR 668

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708

>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein

 Score = 44.6 bits (106), Expect = 4e-07
 Identities = 22/64 (34%), Positives = 40/64 (62%), Gaps = 1/64 (1%)

Query: 8   HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIV 67
           H  +   SGG +++L  A AL  +P ++ LDEPTS +DPI+  ++  ++ ++ K   +IV
Sbjct: 139 HDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQEL-KKKYTIV 197

Query: 68  LTSH 71
           + +H
Sbjct: 198 IVTH 201

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247

>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 44.8 bits (106), Expect = 4e-07
 Identities = 19/56 (33%), Positives = 37/56 (66%), Gaps = 1/56 (1%)

Query: 17  GNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSH 71
           G  +K+  A+AL   P L+  DEPT+ ++P ++ +++ +LS++ Q +  +I+L SH
Sbjct: 162 GECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISH 217

Length = 330

>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 44.7 bits (106), Expect = 4e-07
 Identities = 23/68 (33%), Positives = 39/68 (57%)

Query: 2   GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
           G+ +++ RE  R SGG K++++ A A+   P ++ LDE TS +DP  R  L   +  I+ 
Sbjct: 129 GMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRD 188

Query: 62  TGQSIVLT 69
             Q  V++
Sbjct: 189 DYQMTVIS 196

Length = 279

>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 44.6 bits (105), Expect = 4e-07
 Identities = 19/57 (33%), Positives = 37/57 (64%), Gaps = 1/57 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
           SGG +++L  A A+   P ++ +DEP S +DPIS  ++  ++ +++K   +IV+ +H
Sbjct: 148 SGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKD-YTIVIVTH 203

Length = 250

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 44.4 bits (106), Expect = 4e-07
 Identities = 19/56 (33%), Positives = 37/56 (66%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70
           SGGN++K+  A  L  DP ++ LDEPT G+D  ++  ++ ++ ++   G++I++ S
Sbjct: 403 SGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMIS 458

Length = 500

>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional

 Score = 44.6 bits (105), Expect = 4e-07
 Identities = 24/75 (32%), Positives = 45/75 (60%), Gaps = 7/75 (9%)

Query: 1   MGLTEYRHRESGRY----SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVL 56
           +G+ E   R  G+Y    SGG ++++S A AL  +P ++  DEPTS +DP     +  ++
Sbjct: 139 VGIDE---RAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIM 195

Query: 57  SQIQKTGQSIVLTSH 71
            Q+ + G+++V+ +H
Sbjct: 196 QQLAEEGKTMVVVTH 210

Length = 257

>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system

 Score = 44.5 bits (106), Expect = 4e-07
 Identities = 20/69 (28%), Positives = 40/69 (57%)

Query: 2   GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
           GL +  ++ + + SGG +++++ A AL+  P L+  DEP + +DP S  ++  +L +I +
Sbjct: 133 GLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINR 192

Query: 62  TGQSIVLTS 70
                V+ S
Sbjct: 193 EEGITVIVS 201

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241

>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 44.4 bits (105), Expect = 4e-07
 Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 12  GRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
              SGG +++L  A AL   P ++ +DEPT+ +DP+   ++  +L ++ K   +IVL +H
Sbjct: 148 SNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFEL-KKEYTIVLVTH 206

Length = 253

>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 44.2 bits (104), Expect = 5e-07
 Identities = 20/55 (36%), Positives = 36/55 (65%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLT 69
           SGG +++L  A AL  +P ++ +DEPTS +DP S  R+  +++ ++K    I++T
Sbjct: 150 SGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVT 204

Length = 252

>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional

 Score = 44.2 bits (105), Expect = 5e-07
 Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 1/58 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
           SGG +++++ A AL+ D P++ LDE TS +D  S   + A L ++QK   S+V+ +HR
Sbjct: 482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVI-AHR 538

Length = 582

>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

 Score = 43.7 bits (104), Expect = 6e-07
 Identities = 15/57 (26%), Positives = 34/57 (59%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
           SGG +++++ A A++  P ++  DEPT  +DP     +  +  +I + G ++++ +H
Sbjct: 139 SGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATH 195

Length = 223

>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional

 Score = 44.1 bits (104), Expect = 7e-07
 Identities = 20/57 (35%), Positives = 38/57 (66%), Gaps = 1/57 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
           SGG +++L  A  L  +P ++ +DEPTS +DPIS  ++  ++ +++K   SI++ +H
Sbjct: 169 SGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKD-YSIIIVTH 224

Length = 271

>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 44.0 bits (104), Expect = 7e-07
 Identities = 19/72 (26%), Positives = 42/72 (58%), Gaps = 1/72 (1%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           +G+ +Y   E    SGG K++++ A  L  +P ++ LDE TS +DP  + ++  ++ +++
Sbjct: 131 VGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLK 190

Query: 61  KTGQ-SIVLTSH 71
           K    +++  +H
Sbjct: 191 KKNNLTVISITH 202

Length = 282

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 43.9 bits (104), Expect = 7e-07
 Identities = 19/59 (32%), Positives = 33/59 (55%)

Query: 12  GRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70
              SGGN++K+  A  L   P L+ +DEPT GVD  +R+ ++ ++  I     +++  S
Sbjct: 402 RTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFIS 460

Length = 510

>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 43.6 bits (104), Expect = 7e-07
 Identities = 20/56 (35%), Positives = 37/56 (66%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70
           SGGN++K+  A  L  DP ++ LDEPT GVD  ++  ++ ++ ++   G++++L S
Sbjct: 106 SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLIS 161

This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182

>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins

 Score = 43.1 bits (102), Expect = 7e-07
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 5/60 (8%)

Query: 15  SGGNKRKLSTAMAL----IGDPPLVFLDEPTSGVDPISRHRL-WAVLSQIQKTGQSIVLT 69
           SGG K   + A+ L    +   PL  LDE   G+DP     L  A+L  + K  Q IV+T
Sbjct: 79  SGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVIT 138

ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162

>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 43.9 bits (104), Expect = 8e-07
 Identities = 22/68 (32%), Positives = 39/68 (57%)

Query: 2   GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
           G+ ++ +RE  R SGG K++++ A  L   P ++ LDE TS +DP  R  +   + Q+++
Sbjct: 129 GMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKE 188

Query: 62  TGQSIVLT 69
                VL+
Sbjct: 189 QKGITVLS 196

Length = 279

>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD

 Score = 43.7 bits (104), Expect = 8e-07
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 2   GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
           GL +   R +G  S G K+ L   M L+ DP L+ LDEP +G+      +   +L  +  
Sbjct: 132 GLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG 191

Query: 62  TGQSIVLTSH 71
              S+V+  H
Sbjct: 192 -KHSVVVVEH 200

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242

>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 43.7 bits (103), Expect = 8e-07
 Identities = 21/64 (32%), Positives = 41/64 (64%), Gaps = 1/64 (1%)

Query: 8   HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIV 67
           H ++   SGG +++L  A AL  +P ++ +DEPTS +DP+S  ++  ++ ++ K   +IV
Sbjct: 150 HTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKL-KEKYTIV 208

Query: 68  LTSH 71
           + +H
Sbjct: 209 IVTH 212

Length = 259

>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional

 Score = 43.5 bits (103), Expect = 8e-07
 Identities = 21/57 (36%), Positives = 39/57 (68%), Gaps = 1/57 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
           SGG +++L  A AL  +P ++ +DEPTS +DPIS  ++  ++ +++K   +IV+ +H
Sbjct: 148 SGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKD-YTIVIVTH 203

Length = 250

>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 43.8 bits (103), Expect = 8e-07
 Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
           SGG +++L  A  L   P ++  DEPTS +DPIS  R+  ++  ++K   +IV+ +H
Sbjct: 156 SGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKD-YTIVIVTH 211

Length = 258

>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

 Score = 43.4 bits (103), Expect = 9e-07
 Identities = 20/70 (28%), Positives = 34/70 (48%)

Query: 2   GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
           GL        G+ S G +R+++ A   +   PL  LDEP + +D      L A+++    
Sbjct: 119 GLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAA 178

Query: 62  TGQSIVLTSH 71
            G  ++LT+H
Sbjct: 179 QGGIVLLTTH 188

Length = 209

>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional

 Score = 43.5 bits (103), Expect = 9e-07
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 7/74 (9%)

Query: 2   GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ- 60
           G+ EYR       SGG K++++ A  L   P  +  DEPT+ +DP  R     V++ I+ 
Sbjct: 133 GMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRRE---VVNTIKE 189

Query: 61  ---KTGQSIVLTSH 71
              K G +I+L +H
Sbjct: 190 LNKKYGITIILITH 203

Length = 280

>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 42.8 bits (102), Expect = 9e-07
 Identities = 19/58 (32%), Positives = 34/58 (58%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
           S G ++ +  A AL  +  L+ LDEPT+ + P    RL+ V+ +++  G +++  SHR
Sbjct: 84  SVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHR 141

This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163

>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional

 Score = 43.4 bits (103), Expect = 1e-06
 Identities = 23/72 (31%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           MG+ +   R  G+ SGG +++++ A  L+ + P++ LDEP S +DP  R  +  ++SQ+ 
Sbjct: 117 MGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVC 176

Query: 61  KTGQ-SIVLTSH 71
           +  Q ++++ SH
Sbjct: 177 QERQLTLLMVSH 188

Length = 232

>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C

 Score = 43.2 bits (102), Expect = 1e-06
 Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
           SGG K++++ A ALI +P ++ LDE TS +D  S  ++   L       +++++ +HR
Sbjct: 152 SGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYD-WPERRTVLVIAHR 208

TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226

>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 43.3 bits (102), Expect = 1e-06
 Identities = 21/71 (29%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 2   GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
           G+   + + +   S G K++++ A  L+ +P ++ LDEPT+G+DP+    +  +L ++QK
Sbjct: 130 GIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQK 189

Query: 62  -TGQSIVLTSH 71
             G +I++ +H
Sbjct: 190 ELGLTIIIATH 200

Length = 283

>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 43.5 bits (102), Expect = 1e-06
 Identities = 20/57 (35%), Positives = 37/57 (64%), Gaps = 1/57 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
           SGG +++L  A A+  +P ++ LDEP S +DPI+  R+  ++ +++K   +I L +H
Sbjct: 151 SGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKD-YTIALVTH 206

Length = 261

>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional

 Score = 43.2 bits (102), Expect = 1e-06
 Identities = 20/71 (28%), Positives = 41/71 (57%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           +GL +    +  + SGG ++++S A AL+    ++  DEPT  +D  S   + A+L Q++
Sbjct: 132 LGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLR 191

Query: 61  KTGQSIVLTSH 71
             G ++++ +H
Sbjct: 192 DRGHTVIIVTH 202

Length = 648

>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 43.1 bits (101), Expect = 2e-06
 Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 1/57 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
           SGG +++L  A  L  +P ++ +DEPTS +DPIS  ++  ++  + K   +I++ +H
Sbjct: 152 SGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINL-KESYTIIIVTH 207

Length = 254

>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 43.1 bits (101), Expect = 2e-06
 Identities = 23/71 (32%), Positives = 39/71 (54%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           +GL +YRHR     SGG  + ++ A  L  +P  +  DE TS +DP S   +   + ++ 
Sbjct: 124 IGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLH 183

Query: 61  KTGQSIVLTSH 71
           + G++IV  +H
Sbjct: 184 EKGKTIVYITH 194

Length = 274

>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 42.7 bits (101), Expect = 2e-06
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSH 71
           SGG +++++ A AL  +P ++ LDEP   +D   R  L   L ++  + G + V  +H
Sbjct: 139 SGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTH 196

Length = 345

>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA

 Score = 42.8 bits (101), Expect = 2e-06
 Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 1/61 (1%)

Query: 12  GRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
              SGG +++L+ A AL+ D P++ LDE TS +D  S   + A L ++ +   ++V+ +H
Sbjct: 468 VLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVI-AH 526

Query: 72  R 72
           R
Sbjct: 527 R 527

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571

>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 42.7 bits (100), Expect = 2e-06
 Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 1/64 (1%)

Query: 8   HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIV 67
           H  +   SGG ++++  A  L   P ++ LDEPTS +DPIS  ++  +L ++ +   +I+
Sbjct: 143 HESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLEL-RDQYTII 201

Query: 68  LTSH 71
           L +H
Sbjct: 202 LVTH 205

Length = 252

>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 42.8 bits (101), Expect = 2e-06
 Identities = 20/70 (28%), Positives = 39/70 (55%)

Query: 2   GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
           G+ E         SGG +++++ A AL  +P ++  DEPTS +DP     +  V+  + +
Sbjct: 141 GIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAE 200

Query: 62  TGQSIVLTSH 71
            G+++V+ +H
Sbjct: 201 EGRTMVVVTH 210

Length = 256

>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional

 Score = 42.6 bits (101), Expect = 2e-06
 Identities = 25/64 (39%), Positives = 42/64 (65%), Gaps = 2/64 (3%)

Query: 10  ESGR-YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVL 68
           E GR  SGG +++L+ A AL+ DPP++ LDE TS +D  +  ++ A L ++ K G++  +
Sbjct: 467 ERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMK-GRTTFI 525

Query: 69  TSHR 72
            +HR
Sbjct: 526 IAHR 529

Length = 588

>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional

 Score = 42.8 bits (101), Expect = 2e-06
 Identities = 21/64 (32%), Positives = 40/64 (62%), Gaps = 2/64 (3%)

Query: 9   RESG-RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIV 67
           ++SG   SGG +++L  A A+   P ++ +DEP S +DPIS  R+  ++ ++ K   +I+
Sbjct: 146 KQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHEL-KEQYTII 204

Query: 68  LTSH 71
           + +H
Sbjct: 205 IVTH 208

Length = 264

>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

 Score = 42.7 bits (101), Expect = 2e-06
 Identities = 18/42 (42%), Positives = 23/42 (54%)

Query: 2   GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSG 43
           GL + R R +   S G K+ L   M L  DP L+ LDEP +G
Sbjct: 136 GLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAG 177

Length = 249

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 42.8 bits (101), Expect = 2e-06
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 8/71 (11%)

Query: 9   RESGRYSGGNKRK------LSTAMALIGDPPL--VFLDEPTSGVDPISRHRLWAVLSQIQ 60
           R     SGG +        L+ +  L G   L  +FLDEP   +D     +L  +L ++ 
Sbjct: 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELL 870

Query: 61  KTGQSIVLTSH 71
             G+ I++ SH
Sbjct: 871 SDGRQIIIISH 881

Length = 908

>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK

 Score = 42.2 bits (100), Expect = 2e-06
 Identities = 17/72 (23%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           + +     R+  + SGG +++++   A++ +P +  +DEP S +D   R ++ A L ++Q
Sbjct: 118 LQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQ 177

Query: 61  KT-GQSIVLTSH 71
           +  G + +  +H
Sbjct: 178 QRLGTTTIYVTH 189

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 42.5 bits (100), Expect = 2e-06
 Identities = 19/58 (32%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLW-AVLSQIQKTGQSIVLTSH 71
           S G + +++ A  LI +P +V LDEPT  +DPI++  +  ++L   ++  Q+ ++ SH
Sbjct: 429 SEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSH 486

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 42.3 bits (99), Expect = 2e-06
 Identities = 19/65 (29%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 8   HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSI 66
           H+ +   SGG +++L  A AL   P ++ +DEP  G+DPI+  ++ +++  ++ ++  ++
Sbjct: 145 HKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTM 204

Query: 67  VLTSH 71
           V+ SH
Sbjct: 205 VIVSH 209

Length = 261

>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 42.3 bits (99), Expect = 3e-06
 Identities = 18/61 (29%), Positives = 39/61 (63%), Gaps = 1/61 (1%)

Query: 11  SGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70
           + + SGG +++L+ A AL   P ++ +DEPTS +D ++   +  ++++++    +IV+ S
Sbjct: 151 ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNE-IAIVIVS 209

Query: 71  H 71
           H
Sbjct: 210 H 210

Length = 257

>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 42.4 bits (99), Expect = 3e-06
 Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 1/64 (1%)

Query: 8   HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIV 67
           H+     SGG +++L  A  L  +P ++ +DEP S +DP+S  R+  ++ ++ K   +I 
Sbjct: 142 HKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQEL-KQNYTIA 200

Query: 68  LTSH 71
           + +H
Sbjct: 201 IVTH 204

Length = 251

>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family

 Score = 41.9 bits (99), Expect = 3e-06
 Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 2   GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
           GL ++        SGG K++++ A AL+  P LV  DEPT+ +D  S   +  ++ ++ +
Sbjct: 130 GLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAR 189

Query: 62  -TGQSIVLTSH 71
             G +I++ +H
Sbjct: 190 EQGCTILIVTH 200

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220

>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 42.1 bits (99), Expect = 3e-06
 Identities = 20/69 (28%), Positives = 42/69 (60%)

Query: 3   LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT 62
           L  Y  R     SGG +++++ A AL+ +P ++  DEPT+ +DP    ++ +++ ++ +T
Sbjct: 131 LKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAET 190

Query: 63  GQSIVLTSH 71
           G + V+ +H
Sbjct: 191 GITQVIVTH 199

Length = 242

>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional

 Score = 41.9 bits (98), Expect = 4e-06
 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           +GL  Y H      SGG ++++  A AL  +P ++ +DE  S +DP+ R  +   L ++Q
Sbjct: 152 VGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQ 211

Query: 61  -KTGQSIVLTSH 71
            K  ++IV  SH
Sbjct: 212 AKHQRTIVFISH 223

Length = 400

>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

 Score = 42.0 bits (99), Expect = 4e-06
 Identities = 18/59 (30%), Positives = 37/59 (62%)

Query: 12  GRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70
           G  SGGN++K+     L+  P ++ LDEPT G+D  ++  ++ +++++ K  + I++ S
Sbjct: 390 GSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIIS 448

Length = 491

>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional

 Score = 41.6 bits (98), Expect = 5e-06
 Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
           SGG +++L  A A+   P ++ +DEP S +DPIS  +L   + ++ K   +I++ +H
Sbjct: 165 SGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFEL-KKNYTIIIVTH 220

Length = 267

>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

 Score = 41.5 bits (98), Expect = 5e-06
 Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           +GL    +R+  + SGG +++++ A AL+  P +  LDEP S +D   R  + + + ++ 
Sbjct: 121 LGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLH 180

Query: 61  KT-GQSIVLTSHR 72
           +  G + +  +H 
Sbjct: 181 ERLGTTTIYVTHD 193

Length = 338

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 41.6 bits (97), Expect = 5e-06
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 15   SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHR 72
            SGG K++++ A AL+ +P ++ LDE TS +D  S   +   +  I+ K  ++I+  +HR
Sbjct: 1360 SGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHR 1418

Length = 1466

>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein

 Score = 41.5 bits (98), Expect = 5e-06
 Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 4/64 (6%)

Query: 10  ESGR-YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVL 68
           E G   SGG +++L  A AL+ +P ++ LDE TS +DP +      +   +++ G + ++
Sbjct: 611 EGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKI---IDDNLRRRGCTCII 667

Query: 69  TSHR 72
            +HR
Sbjct: 668 VAHR 671

This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 41.5 bits (98), Expect = 6e-06
 Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 7   RHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQS 65
           R+R    +SGG +++++ A ALI  P L+ LDEPTS +D   + ++  +L  +Q K G S
Sbjct: 420 RNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLS 479

Query: 66  IVLTSH 71
            +  SH
Sbjct: 480 YLFISH 485

Length = 534

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 41.0 bits (97), Expect = 7e-06
 Identities = 18/61 (29%), Positives = 33/61 (54%)

Query: 12  GRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
           G  S   ++ +  A AL  D  ++ LDEPT+ +      RL+ ++ +++  G +I+  SH
Sbjct: 144 GDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISH 203

Query: 72  R 72
           R
Sbjct: 204 R 204

Length = 500

>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D

 Score = 40.6 bits (96), Expect = 7e-06
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
           SGG +++L+ A  L+  P  VFLDE TS +D  S  RL      +++ G +++   HR
Sbjct: 93  SGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRL---YQLLKELGITVISVGHR 147

Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166

>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins

 Score = 41.0 bits (97), Expect = 7e-06
 Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
           SGG K++++ A AL+ +P ++ LDE TS +D  S   +   L +  K G++ ++ +HR
Sbjct: 141 SGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMK-GRTTIVIAHR 197

MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238

>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 41.1 bits (96), Expect = 7e-06
 Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
           SGG +++L  A  +   P ++ +DEP S +DPIS  ++  ++ ++ K   +IV+ +H
Sbjct: 148 SGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKL-KEDYTIVIVTH 203

Length = 250

>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family

 Score = 41.3 bits (97), Expect = 7e-06
 Identities = 18/58 (31%), Positives = 38/58 (65%), Gaps = 1/58 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
           SGG +++++ A AL+G+P ++  DE TS +D  S   +   + +I + G+++++ +HR
Sbjct: 595 SGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICR-GRTVIIIAHR 651

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694

>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 41.1 bits (96), Expect = 7e-06
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 5   EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-G 63
           +Y  R     SGG KR+++ A  +  D   + LDEPT G+DP        +  ++ K   
Sbjct: 142 DYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYK 201

Query: 64  QSIVLTSH 71
           + I++ +H
Sbjct: 202 KRIIMVTH 209

Length = 289

>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein

 Score = 40.8 bits (96), Expect = 8e-06
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 13  RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
             SGG +++++ A A++ D P++ LDE TS +D  S   +   L  + K G++ ++ +HR
Sbjct: 476 TLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMK-GRTTLIIAHR 534

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576

>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.9 bits (96), Expect = 9e-06
 Identities = 14/34 (41%), Positives = 24/34 (70%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPIS 48
           SGG +++L  A A+  DP ++ +DEP S +DP++
Sbjct: 182 SGGQQQRLCIARAIAPDPEVILMDEPASALDPVA 215

Length = 285

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 40.5 bits (95), Expect = 1e-05
 Identities = 18/56 (32%), Positives = 34/56 (60%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70
           SGGN++K+  +  L   P ++  DEPT G+D  ++  ++ V+ Q+   G+ I++ S
Sbjct: 411 SGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVS 466

Length = 510

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score = 40.6 bits (95), Expect = 1e-05
 Identities = 17/54 (31%), Positives = 35/54 (64%)

Query: 19   KRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
            +++L+ A+ L+ +P ++F+DEPTSG+D  +   +   +     TG+++V T H+
Sbjct: 1025 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1078

Length = 1470

>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 40.2 bits (95), Expect = 1e-05
 Identities = 18/41 (43%), Positives = 27/41 (65%)

Query: 8   HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPIS 48
           H+ +   SGG +++L  A AL   P ++ +DEPTS +DPIS
Sbjct: 144 HKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPIS 184

Length = 253

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 40.0 bits (93), Expect = 2e-05
 Identities = 19/63 (30%), Positives = 38/63 (60%), Gaps = 1/63 (1%)

Query: 11  SGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSI-VLT 69
           + + SGG K+++S A A+I +P ++ LDE TS +D  S + +   ++ ++     I ++ 
Sbjct: 577 ASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIII 636

Query: 70  SHR 72
           +HR
Sbjct: 637 AHR 639

Length = 1466

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 39.8 bits (93), Expect = 2e-05
 Identities = 18/54 (33%), Positives = 32/54 (59%)

Query: 19  KRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
           K+ L  A  L+ D  ++ +DEPTS +       L+ +++Q++K G +IV  SH+
Sbjct: 151 KQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHK 204

Length = 510

>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional

 Score = 40.0 bits (94), Expect = 2e-05
 Identities = 21/57 (36%), Positives = 40/57 (70%), Gaps = 1/57 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
           SGG +++L  A A+  +P ++ LDEPTS +DPIS  ++  +++++ K+  +IV+ +H
Sbjct: 170 SGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITEL-KSKYTIVIVTH 225

Length = 272

>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional

 Score = 40.1 bits (94), Expect = 2e-05
 Identities = 18/55 (32%), Positives = 32/55 (58%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLT 69
           SGG ++++  A  L   P ++ LDEPTS +DPIS  ++   L  ++     +++T
Sbjct: 150 SGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVT 204

Length = 252

>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional

 Score = 40.0 bits (94), Expect = 2e-05
 Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 1/57 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
           SGG +++L  A  +   P ++ LDEP S +DPIS  R+  +++++ K   ++V+ +H
Sbjct: 158 SGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITEL-KQDYTVVIVTH 213

Length = 260

>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional

 Score = 39.8 bits (93), Expect = 2e-05
 Identities = 17/55 (30%), Positives = 35/55 (63%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLT 69
           SGG +++L  A AL  +P ++ +DEP S +DPI+  ++  ++ +++     I++T
Sbjct: 151 SGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVT 205

Length = 253

>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C

 Score = 39.8 bits (93), Expect = 2e-05
 Identities = 19/58 (32%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
           SGG +++++ A ALI +P ++  DE TS +D  S H +   +  I   G+++++ +HR
Sbjct: 140 SGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHR 196

The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237

>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD

 Score = 39.7 bits (93), Expect = 2e-05
 Identities = 20/58 (34%), Positives = 38/58 (65%), Gaps = 1/58 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSH 71
           SGG  +++  A+AL+ +PP +  DEPT+ +D +++ R+  +L ++ Q  G  I+L +H
Sbjct: 127 SGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITH 184

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 39.8 bits (93), Expect = 3e-05
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 5/60 (8%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISR---HRLWAVLSQIQKTGQSIVLTSH 71
           SGG K+++  A  L  +P L   DEPT  +DP +    H   A+   ++ +G S+VLTSH
Sbjct: 170 SGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHN--ALEEAVKASGISMVLTSH 227

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 39.2 bits (92), Expect = 3e-05
 Identities = 19/58 (32%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSH 71
           SGG ++++  AMAL  +P L+  DEPT+ +D   + ++  +L ++Q   G +I+  +H
Sbjct: 159 SGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITH 216

Length = 534

>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 39.4 bits (92), Expect = 3e-05
 Identities = 17/55 (30%), Positives = 34/55 (61%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLT 69
           SGG +++L  A  L  DP ++ +DEP S +DPI+  ++  ++ ++ +    +V+T
Sbjct: 202 SGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVT 256

Length = 305

>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional

 Score = 39.4 bits (93), Expect = 3e-05
 Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 2   GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
           GL++   R   + SGG K++++ A AL  +P ++  DE TS +DP +   +  +L  I +
Sbjct: 129 GLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINR 188

Query: 62  T-GQSIVLTSH 71
             G +IVL +H
Sbjct: 189 ELGLTIVLITH 199

Length = 343

>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

 Score = 39.6 bits (92), Expect = 3e-05
 Identities = 15/61 (24%), Positives = 33/61 (54%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           +GL +       + SGG +++++ A A+  +P ++ LDEP S +D   R  +   ++ + 
Sbjct: 125 VGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALH 184

Query: 61  K 61
           +
Sbjct: 185 E 185

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362

>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional

 Score = 39.2 bits (91), Expect = 3e-05
 Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI- 59
           +G+  + H+     SGG +++++ A AL+    ++  DEP + +DP S   +   L  I 
Sbjct: 140 VGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDIN 199

Query: 60  QKTGQSIVLTSHR 72
           Q  G ++V+T H+
Sbjct: 200 QNDGITVVVTLHQ 212

Length = 262

>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional

 Score = 39.1 bits (92), Expect = 3e-05
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 14  YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVD 45
           +SGG +++L  A  L+  P LVF+DEPT G+D
Sbjct: 152 FSGGMQQRLQIARNLVTHPRLVFMDEPTGGLD 183

Length = 258

>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 39.0 bits (91), Expect = 3e-05
 Identities = 21/63 (33%), Positives = 39/63 (61%), Gaps = 2/63 (3%)

Query: 10  ESG-RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVL 68
           ESG   SGG +++L  A  +  +P ++ +DEP S +DPIS  ++   + +++K   +IV+
Sbjct: 150 ESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKN-FTIVI 208

Query: 69  TSH 71
            +H
Sbjct: 209 VTH 211

Length = 269

>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK

 Score = 39.0 bits (91), Expect = 3e-05
 Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 1/59 (1%)

Query: 14  YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVL-SQIQKTGQSIVLTSH 71
           +SGG +++L  A  L+  P LVF+DEPT G+D   + RL  +L   ++  G ++++ +H
Sbjct: 149 FSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTH 207

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253

>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

 Score = 39.2 bits (92), Expect = 4e-05
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
           SGG +++L+ A  L+  P  VFLDE TS +D  +  RL+ +L + +    +++   HR
Sbjct: 517 SGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKE-ELPDATVISVGHR 573

Length = 604

>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional

 Score = 38.8 bits (91), Expect = 4e-05
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRH-RLWAVLSQIQKTGQSIVLTSH 71
           SGG +++   AM L  D P+V LDEPT+ +D I+    L  ++ ++   G+++V   H
Sbjct: 140 SGGQRQRAFLAMVLAQDTPVVLLDEPTTYLD-INHQVELMRLMRELNTQGKTVVTVLH 196

Length = 255

>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 38.8 bits (90), Expect = 4e-05
 Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
           SGG +++L  A A+   P ++ +DEP S +DPIS  ++  +  ++ K   +I++ +H
Sbjct: 163 SGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLEL-KEQYTIIMVTH 218

Length = 274

>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed

 Score = 38.8 bits (91), Expect = 5e-05
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 9/60 (15%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTS--GVDPISRHRLWAVLSQIQKTGQ-SIVLTSH 71
           SGG  RK +   AL+ +P ++ LDEPT+   ++ I     W  L    KT Q SI+  SH
Sbjct: 158 SGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIE----W--LEGFLKTFQGSIIFISH 211

Length = 635

>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 38.7 bits (90), Expect = 5e-05
 Identities = 17/55 (30%), Positives = 34/55 (61%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLT 69
           SGG +++L  A  L  +P ++ +DEP S +DPI+  ++  ++  ++K    I++T
Sbjct: 151 SGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVT 205

Length = 253

>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional

 Score = 38.5 bits (90), Expect = 5e-05
 Identities = 19/58 (32%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSH 71
           SGG  +++  A+AL+ + P +  DEPT+ +D +++ R+  +L  I QK    ++L +H
Sbjct: 142 SGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTH 199

Length = 254

>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

 Score = 38.5 bits (90), Expect = 5e-05
 Identities = 21/60 (35%), Positives = 33/60 (55%)

Query: 2   GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
           GL     +  G+ SGG +++++ A AL   P L+ LDEP S +D   R  L   + Q+Q+
Sbjct: 123 GLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQR 182

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353

>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 38.5 bits (89), Expect = 6e-05
 Identities = 17/57 (29%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
           SGG +++L  A AL   P ++ +DEP S +DPI+  ++  ++  ++ +  +I + +H
Sbjct: 152 SGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLR-SELTIAIVTH 207

Length = 259

>gnl|CDD|222219 pfam13558, SbcCD_C, Putative exonuclease SbcCD, C subunit

 Score = 36.8 bits (86), Expect = 7e-05
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 12/63 (19%)

Query: 8  HRESGRYSGGNKRKL-STAMAL---------IGDPP--LVFLDEPTSGVDPISRHRLWAV 55
           R+SG  SGG K+ L   A+A           G P   L+FLDE  + +D  +   L  +
Sbjct: 17 SRDSGTLSGGEKQVLAYLALAAALAAQYGSNRGGPAPRLIFLDEAFAKLDEENIRSLLEL 76

Query: 56 LSQ 58
          L +
Sbjct: 77 LRE 79

Possible exonuclease SbcCD, C subunit, on AAA proteins. Length = 79

>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 38.2 bits (89), Expect = 7e-05
 Identities = 18/61 (29%), Positives = 33/61 (54%)

Query: 2   GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
            + E    E    SGG K++++ A  L  +P ++ LDE TS +DP +R  L  ++ +++ 
Sbjct: 131 DMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKS 190

Query: 62  T 62
            
Sbjct: 191 E 191

Length = 269

>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

 Score = 38.1 bits (89), Expect = 7e-05
 Identities = 18/58 (31%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
           SGG K++++ A  ++ +PP++ LDE TS +D  +   + A L ++     ++V+ +HR
Sbjct: 401 SGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVI-AHR 457

Length = 497

>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed

 Score = 38.2 bits (89), Expect = 8e-05
 Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSH 71
           SGG  +++  A AL+  P L+ LDEPT GVD   +  L+ ++ Q+++    ++++ SH
Sbjct: 122 SGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSH 179

Length = 251

>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit

 Score = 38.2 bits (89), Expect = 8e-05
 Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 3   LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-K 61
           L E+  R+  + SGG +++++ A AL+  P ++ LDEP S +D   R ++   L  IQ +
Sbjct: 90  LEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQ 149

Query: 62  TGQSIVLTSH 71
            G + V  +H
Sbjct: 150 LGITFVFVTH 159

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325

>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein

 Score = 38.3 bits (89), Expect = 8e-05
 Identities = 21/71 (29%), Positives = 39/71 (54%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
             L+    R+    SGG ++++  A AL  +P L+ LDEPT+ +D  ++    A++ ++ 
Sbjct: 125 TELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELA 184

Query: 61  KTGQSIVLTSH 71
            TG ++V   H
Sbjct: 185 ATGVTVVAALH 195

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256

>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional

 Score = 38.3 bits (89), Expect = 8e-05
 Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 9/70 (12%)

Query: 5   EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVL---SQIQK 61
           E + + +  +SGG + +++ A AL  +P L+ LDEPT+ +D      L AVL   + + K
Sbjct: 336 EMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLD------LHAVLWLETYLLK 389

Query: 62  TGQSIVLTSH 71
             ++ ++ SH
Sbjct: 390 WPKTFIVVSH 399

Length = 718

>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 38.1 bits (88), Expect = 8e-05
 Identities = 17/57 (29%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
           SGG +++L  A  +   P ++ +DEP S +DPIS  ++  ++ ++ K   +I++ +H
Sbjct: 150 SGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEEL-KEKYTIIIVTH 205

Length = 252

>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional

 Score = 38.1 bits (89), Expect = 8e-05
 Identities = 20/69 (28%), Positives = 42/69 (60%)

Query: 3   LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT 62
           L  Y  R     SGG +++++ A AL+ +P ++  DEPT+ +DP    ++ +++ ++ +T
Sbjct: 131 LKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAET 190

Query: 63  GQSIVLTSH 71
           G + V+ +H
Sbjct: 191 GITQVIVTH 199

Length = 242

>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 37.9 bits (88), Expect = 9e-05
 Identities = 17/57 (29%), Positives = 37/57 (64%), Gaps = 1/57 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
           SGG +++L  A  L  +P ++ LDEPTS +DP +  ++  ++ +++ +  +I++ +H
Sbjct: 184 SGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGS-YTIMIVTH 239

Length = 286

>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein

 Score = 38.2 bits (89), Expect = 9e-05
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
           SGG K++++ A AL+  P ++ LDE TS +D      L    S+  +T   ++L +HR
Sbjct: 619 SGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRT---VLLIAHR 673

[Transport and binding proteins, Other]. Length = 711

>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 37.8 bits (88), Expect = 9e-05
 Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 1/59 (1%)

Query: 14  YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVL-SQIQKTGQSIVLTSH 71
           +SGG +++L  A  L+  P LVF+DEPT G+D   + RL  +L   +++ G ++V+ +H
Sbjct: 152 FSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTH 210

Length = 258

>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C

 Score = 37.7 bits (87), Expect = 1e-04
 Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 2/60 (3%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVD-PISRHRLWA-VLSQIQKTGQSIVLTSHR 72
           SGG ++++  A AL  +  +VFLD+P S +D  +S H +   +L  +Q   +++VL +H+
Sbjct: 142 SGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHK 201

The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218

>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein

 Score = 37.8 bits (88), Expect = 1e-04
 Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 9   RESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIV 67
           R  GR SGG K++++   AL+  P L+ +DEP + +D   ++ +   L ++  + G  I+
Sbjct: 127 RLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPIL 186

Query: 68  LTSH 71
             SH
Sbjct: 187 YVSH 190

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354

>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 37.6 bits (88), Expect = 1e-04
 Identities = 22/72 (30%), Positives = 43/72 (59%), Gaps = 1/72 (1%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           +GL  +  R+  + SGG +++++ A AL+ +P ++ LDEP S +D   R ++   L ++Q
Sbjct: 124 VGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQ 183

Query: 61  K-TGQSIVLTSH 71
           +  G + V  +H
Sbjct: 184 RELGITFVYVTH 195

Length = 352

>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional

 Score = 37.7 bits (88), Expect = 1e-04
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 13/64 (20%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISR-------HRLWAVLSQIQKTGQSIV 67
           SGG K++++ A ALI  P L+ LDEP   +D ++R         LW      Q+ G +++
Sbjct: 135 SGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLW------QQHGFTVL 188

Query: 68  LTSH 71
           L +H
Sbjct: 189 LVTH 192

Length = 257

>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional

 Score = 37.9 bits (88), Expect = 1e-04
 Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 3   LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRL-WAVLSQIQK 61
           + E+  R+  + SGG +++++ A +L   P L+ LDEP   +D   R R+   V+  +++
Sbjct: 139 MQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILER 198

Query: 62  TGQSIVLTSH 71
            G + V+ +H
Sbjct: 199 VGVTCVMVTH 208

Length = 377

>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional

 Score = 37.5 bits (87), Expect = 1e-04
 Identities = 19/72 (26%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI- 59
           +GL    +      SGG +++++ A AL+ +P LV  DEPT  +D  +   ++ +L ++ 
Sbjct: 133 VGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELN 192

Query: 60  QKTGQSIVLTSH 71
           +  G + ++ +H
Sbjct: 193 RLQGTAFLVVTH 204

Length = 233

>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

 Score = 37.4 bits (87), Expect = 1e-04
 Identities = 18/59 (30%), Positives = 35/59 (59%)

Query: 13  RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
           R SGG +++++ A AL   P ++  DEPTS +DP     +   + Q+ +  +++V+ +H
Sbjct: 144 RLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTH 202

Length = 250

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 37.6 bits (88), Expect = 1e-04
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 2   GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVD 45
           G  +   R     SGG +R+++ A AL+ +P L+ LDEPT+ +D
Sbjct: 143 GFPD-EDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLD 185

Length = 530

>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component

 Score = 37.1 bits (87), Expect = 2e-04
 Identities = 22/60 (36%), Positives = 39/60 (65%), Gaps = 2/60 (3%)

Query: 14  YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWA-VLSQIQKTGQSIVLTSHR 72
           +SGG K++      L+ +P L  LDEP SG+D I   RL A V++++++ G+S+++ +H 
Sbjct: 105 FSGGEKKRNEILQLLLLEPDLAILDEPDSGLD-IDALRLVAEVINKLREEGKSVLIITHY 163

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200

>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional

 Score = 37.0 bits (86), Expect = 2e-04
 Identities = 19/57 (33%), Positives = 37/57 (64%), Gaps = 1/57 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
           SGG +++L  A A+  +P ++ +DEP S +DPIS   +  +++++ K   +IV+ +H
Sbjct: 150 SGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINEL-KQDYTIVIVTH 205

Length = 258

>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 37.1 bits (87), Expect = 2e-04
 Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 11  SGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70
           +   S G  ++L+ A AL+    L+ LDEPT+ +D  S   +   L+   +  Q+ ++ +
Sbjct: 483 AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASR-RQTTLMVT 541

Query: 71  HR 72
           H+
Sbjct: 542 HQ 543

Length = 588

>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional

 Score = 37.1 bits (86), Expect = 2e-04
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSH 71
           SGG  R+ + A A+  +P L+  DEP  G DPI+   L  ++S++    G + V+ SH
Sbjct: 145 SGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSH 202

Length = 269

>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50

 Score = 36.8 bits (86), Expect = 2e-04
 Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 15/76 (19%)

Query: 9   RESGRYSGGNKRKLS------TAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI--- 59
              GR SGG K   S       A     +  ++ LDEPT+ +D      +   L++I   
Sbjct: 111 DMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLD---EENIEESLAEIIEE 167

Query: 60  ---QKTGQSIVLTSHR 72
              QK  Q IV+T   
Sbjct: 168 RKSQKNFQLIVITHDE 183

The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204

>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score = 37.0 bits (86), Expect = 2e-04
 Identities = 19/58 (32%), Positives = 38/58 (65%), Gaps = 1/58 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
           SGG K+++S A AL+ +  ++ LD+  S VD  + H++   L Q  + G+++++++HR
Sbjct: 453 SGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGE-GRTVIISAHR 509

Length = 569

>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional

 Score = 36.8 bits (86), Expect = 2e-04
 Identities = 19/71 (26%), Positives = 34/71 (47%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           +GL    H   G  S G KR+++ A  L+ + P+  LDEPT+ +D  +      ++    
Sbjct: 115 VGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHL 174

Query: 61  KTGQSIVLTSH 71
             G  ++  +H
Sbjct: 175 AQGGIVIAATH 185

Length = 207

>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 36.9 bits (86), Expect = 2e-04
 Identities = 15/35 (42%), Positives = 22/35 (62%)

Query: 12  GRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDP 46
           G  SGG ++ LS  MA +  P ++ LDE T+ +DP
Sbjct: 147 GLLSGGQRQALSLLMATLHPPKILLLDEHTAALDP 181

Length = 263

>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional

 Score = 36.6 bits (85), Expect = 3e-04
 Identities = 17/57 (29%), Positives = 36/57 (63%), Gaps = 1/57 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
           SGG +++L  A A+   P ++ +DEP S +DPI+  ++  ++ ++ +   +IV+ +H
Sbjct: 165 SGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDEL-RQNYTIVIVTH 220

Length = 267

>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein

 Score = 36.4 bits (84), Expect = 3e-04
 Identities = 18/60 (30%), Positives = 37/60 (61%), Gaps = 1/60 (1%)

Query: 13  RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
           R SGG +++L+ A A++ + P++ LDE TS +D  +  R+   +  ++K   + ++ +HR
Sbjct: 471 RLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFII-AHR 529

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585

>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 36.6 bits (84), Expect = 3e-04
 Identities = 18/57 (31%), Positives = 31/57 (54%)

Query: 13  RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLT 69
           R SGG ++ L  A  L  +P ++ LDEPTS +DP +  ++   +  +      I++T
Sbjct: 163 RLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVT 219

Length = 276

>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional

 Score = 36.1 bits (84), Expect = 4e-04
 Identities = 15/35 (42%), Positives = 21/35 (60%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISR 49
           S G +R      AL+  P L+ LDEP  G+DP++R
Sbjct: 403 SWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNR 437

Length = 490

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 36.2 bits (84), Expect = 4e-04
 Identities = 15/45 (33%), Positives = 26/45 (57%)

Query: 28  LIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
           L+ D  ++ LDEPT+ + P    RL++ + ++   G  IV  SH+
Sbjct: 155 LMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHK 199

Length = 510

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 36.5 bits (85), Expect = 4e-04
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
           SGG K +L  A  L+  P L+ LDEPT+ +D  S   L   L   + T   ++L SH
Sbjct: 441 SGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGT---VLLVSH 494

Length = 530

>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters

 Score = 36.1 bits (84), Expect = 4e-04
 Identities = 11/34 (32%), Positives = 20/34 (58%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPIS 48
           SGG ++++S A AL+    ++  D  T G+D  +
Sbjct: 120 SGGERKRVSIAEALVSRASVLCWDNSTRGLDSST 153

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202

>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional

 Score = 36.3 bits (84), Expect = 4e-04
 Identities = 18/56 (32%), Positives = 36/56 (64%), Gaps = 1/56 (1%)

Query: 17  GNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSH 71
           G  +K+  A+AL   P L+  DEPT+ ++P ++ +++ +L+++ Q    +I+L SH
Sbjct: 162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISH 217

Length = 330

>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 35.9 bits (84), Expect = 4e-04
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 8/57 (14%)

Query: 2   GLTEYRHRESGRYSGGNKRKLSTAMALI------GDPPLVFLDEPTSGVDPISRHRL 52
            L     R+  + SGG ++++  A  L       G P  + LDEPTS +D    H+ 
Sbjct: 123 DLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDL--AHQH 177

Length = 258

>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein

 Score = 35.9 bits (83), Expect = 4e-04
 Identities = 17/59 (28%), Positives = 31/59 (52%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI 59
           + L     R   + SGG +++++ A AL  +P ++ LDEP   +D   R  L + L ++
Sbjct: 118 VQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKL 176

[Transport and binding proteins, Anions]. Length = 237

>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional

 Score = 35.9 bits (83), Expect = 5e-04
 Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 3/62 (4%)

Query: 10  ESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLT 69
           E+ R+SGG K +L  A+ +   P L+ LDEPT+ +D   R  L   L  I   G ++V+ 
Sbjct: 427 ETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEAL--IDFEG-ALVVV 483

Query: 70  SH 71
           SH
Sbjct: 484 SH 485

Length = 638

>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 36.0 bits (83), Expect = 5e-04
 Identities = 17/55 (30%), Positives = 35/55 (63%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLT 69
           SGG +++L  A A+   P ++ +DEP S +DP++ + +  ++ +++K    IV+T
Sbjct: 151 SGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVT 205

Length = 251

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 36.0 bits (84), Expect = 5e-04
 Identities = 14/46 (30%), Positives = 26/46 (56%)

Query: 27  ALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
           AL     L+ LDEPT+ + P     L+ +L ++   G++I+  +H+
Sbjct: 154 ALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHK 199

Length = 501

>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 35.5 bits (82), Expect = 6e-04
 Identities = 16/54 (29%), Positives = 34/54 (62%)

Query: 14  YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIV 67
           +SGG +++++ A   I D P++ LDEPT+ +D  +R  +  ++ + +  G ++V
Sbjct: 153 FSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALV 206

Length = 235

>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional

 Score = 35.8 bits (83), Expect = 6e-04
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 14  YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSH 71
           +SGG  +++  A ALI +P L+  DEP S +D   + ++  +L Q+Q+  G S++  +H
Sbjct: 162 FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAH 220

Length = 331

>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein

 Score = 35.4 bits (82), Expect = 6e-04
 Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 2/65 (3%)

Query: 8   HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSI 66
           HR S   SGG +++++ A AL+  P LV  DEPT  +D  +   ++ ++ ++ +    S 
Sbjct: 137 HRPS-ELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSF 195

Query: 67  VLTSH 71
           ++ +H
Sbjct: 196 LVVTH 200

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221

>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor

 Score = 35.0 bits (81), Expect = 0.001
 Identities = 17/71 (23%), Positives = 33/71 (46%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           + L     R   + SGG  ++++ A AL  D    F DEP+S +D   R     ++ ++ 
Sbjct: 127 LELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELA 186

Query: 61  KTGQSIVLTSH 71
           +    +++  H
Sbjct: 187 EDDNYVLVVEH 197

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255

>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional

 Score = 35.3 bits (82), Expect = 0.001
 Identities = 18/56 (32%), Positives = 33/56 (58%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70
           SGGN++K      L  D  ++ LDEPT G+D  ++H ++ V+ ++   G +++  S
Sbjct: 398 SGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVS 453

Length = 501

>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

 Score = 34.8 bits (80), Expect = 0.001
 Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 7/78 (8%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPP-------LVFLDEPTSGVDPISRHRLW 53
           + L +   R + + SGG  +++  A  ++   P       L+ LDEP + +D   +  L 
Sbjct: 113 LALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALD 172

Query: 54  AVLSQIQKTGQSIVLTSH 71
            +LS + + G +IV++SH
Sbjct: 173 RLLSALCQQGLAIVMSSH 190

Length = 248

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 35.0 bits (81), Expect = 0.001
 Identities = 20/71 (28%), Positives = 38/71 (53%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           +GL     R+    SGG  ++++ A AL+ D  + F DEP+S +D   R     V+ ++ 
Sbjct: 201 LGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELA 260

Query: 61  KTGQSIVLTSH 71
           + G+ +++  H
Sbjct: 261 EDGKYVIVVEH 271

Length = 591

>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 34.7 bits (80), Expect = 0.001
 Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           +GL +       + SGG +++++ A A  G P ++F DEPT  +D  +  ++  +L  + 
Sbjct: 134 VGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALN 193

Query: 61  KT-GQSIVLTSH 71
           +  G ++VL +H
Sbjct: 194 RERGTTLVLVTH 205

Length = 228

>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein

 Score = 34.4 bits (80), Expect = 0.001
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 13/65 (20%)

Query: 14  YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQS-----IVL 68
            S G ++ L  A AL+    ++ LDE T+ VDP +        + IQKT +       VL
Sbjct: 140 LSVGQRQLLCLARALLRKSKILVLDEATASVDPETD-------ALIQKTIREAFKDCTVL 192

Query: 69  T-SHR 72
           T +HR
Sbjct: 193 TIAHR 197

The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221

>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C

 Score = 34.4 bits (80), Expect = 0.001
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWA-VLSQIQKTGQSIVLTSHR 72
           SGG K+++S A A+  D  +  LD+P S VD      ++   +  +    ++ +L +H+
Sbjct: 129 SGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQ 187

This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204

>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional

 Score = 34.6 bits (80), Expect = 0.001
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 2   GL-TEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVD 45
           GL  E+  R    +SGG +++++ A AL+ DP +V  DEP S +D
Sbjct: 142 GLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALD 186

Length = 327

>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional

 Score = 34.7 bits (80), Expect = 0.001
 Identities = 14/32 (43%), Positives = 23/32 (71%)

Query: 14  YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVD 45
           +SGG ++++  AMAL+  P L+  DEPT+ +D
Sbjct: 162 FSGGMRQRVMIAMALLCRPKLLIADEPTTALD 193

Length = 330

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score = 34.4 bits (79), Expect = 0.002
 Identities = 17/56 (30%), Positives = 34/56 (60%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70
           SGG K++++T   ++G    +F+DE ++G+D  + +++   L QI    ++ VL S
Sbjct: 338 SGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMS 393

Length = 1470

>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

 Score = 34.5 bits (80), Expect = 0.002
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 14  YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVD 45
           +SGG K++      L+ +P L  LDEP SG+D
Sbjct: 145 FSGGEKKRNEILQLLLLEPKLAILDEPDSGLD 176

Length = 251

>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional

 Score = 34.1 bits (78), Expect = 0.002
 Identities = 19/71 (26%), Positives = 35/71 (49%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           +GL  Y      + S G K++L+ A   +   PL  LDEP + +D      +  ++S   
Sbjct: 125 VGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHL 184

Query: 61  KTGQSIVLTSH 71
           + G + ++T+H
Sbjct: 185 RGGGAALVTTH 195

Length = 214

>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein

 Score = 34.2 bits (79), Expect = 0.002
 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 3/72 (4%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           MG+        G  SGG +++L  A AL+  P ++  DE TS +D  ++  +   L +++
Sbjct: 576 MGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLK 635

Query: 61  KTGQSIVLTSHR 72
            T    ++ +HR
Sbjct: 636 VTR---IVIAHR 644

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686

>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA

 Score = 33.8 bits (78), Expect = 0.002
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 2/65 (3%)

Query: 9   RESGRYSGGNKRKLSTAMALIGDPP--LVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSI 66
           ++    SGG  +++  A  L  +PP  L  LDEP++G+     ++L  V+  +   G ++
Sbjct: 83  QKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTV 142

Query: 67  VLTSH 71
           +L  H
Sbjct: 143 ILIEH 147

Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 33.9 bits (78), Expect = 0.003
 Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 4/43 (9%)

Query: 3   LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVD 45
           LT+Y H+     SGG ++++  AMAL+  P L+  DEPT+ +D
Sbjct: 150 LTDYPHQ----LSGGERQRVMIAMALLTRPELLIADEPTTALD 188

Length = 529

>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 33.7 bits (77), Expect = 0.003
 Identities = 12/42 (28%), Positives = 24/42 (57%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVL 56
           SGG K++++    L   P ++ LDE TS +D  ++  +  ++
Sbjct: 135 SGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMI 176

Length = 223

>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein

 Score = 33.6 bits (77), Expect = 0.003
 Identities = 13/32 (40%), Positives = 21/32 (65%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDP 46
           SGG +++++ A AL   P ++  DE TS +DP
Sbjct: 148 SGGQQQRVAIARALAMRPKVMLFDEVTSALDP 179

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 33.1 bits (75), Expect = 0.004
 Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 5   EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWA------VLSQ 58
                +    SG  + +L+ A+A    P ++ LDE TS +D      L        +L  
Sbjct: 52  IIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLL 111

Query: 59  IQKTGQSIVLTSHR 72
             +   +++LT++ 
Sbjct: 112 KSEKNLTVILTTND 125

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional

 Score = 33.2 bits (76), Expect = 0.004
 Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 3/69 (4%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           +GL    HR     SGG +++   AM +  D   + LDEPTS +D I+ H++  VL+ + 
Sbjct: 135 VGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALD-IA-HQV-DVLALVH 191

Query: 61  KTGQSIVLT 69
           +  Q   LT
Sbjct: 192 RLSQERGLT 200

Length = 265

>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional

 Score = 33.2 bits (76), Expect = 0.004
 Identities = 20/72 (27%), Positives = 41/72 (56%), Gaps = 1/72 (1%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVL-SQI 59
           +GL +       + SGG +++++ A A  G P ++F DEPT  +D  +  ++  +L S  
Sbjct: 134 LGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLN 193

Query: 60  QKTGQSIVLTSH 71
           ++ G +++L +H
Sbjct: 194 REHGTTLILVTH 205

Length = 228

>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 33.5 bits (77), Expect = 0.004
 Identities = 14/37 (37%), Positives = 23/37 (62%)

Query: 9   RESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVD 45
           R  G  SGG K++++   AL+  P L+ +DEP + +D
Sbjct: 124 RYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160

Length = 352

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	72
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.97
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.96
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.96
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.96
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.95
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.95
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.95
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.95
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.95
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.95
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.95
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.94
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.94
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.94
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.94
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.94
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.94
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.94
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.94
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.94
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.94
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.94
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.94
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.94
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.94
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.94
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.94
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.94
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.94
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.94
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.94
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.94
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.94
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.94
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.94
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.94
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.94
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.94
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.94
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.94
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.94
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.94
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.94
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.94
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.94
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.94
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.94
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.94
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.94
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.94
PRK10908	222	cell division protein FtsE; Provisional	99.94
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.94
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.94
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.93
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.93
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.93
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.93
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.93
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.93
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.93
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.93
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.93
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.93
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.93
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.93
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.93
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.93
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.93
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.93
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.93
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.93
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.93
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.93
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.93
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.93
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.93
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.93
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.93
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.93
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.93
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.93
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.93
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.93
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.93
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.93
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.93
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.93
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.93
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.93
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.93
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.93
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.93
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.93
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.93
PRK10938	490	putative molybdenum transport ATP-binding protein	99.93
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.93
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.93
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.93
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.93
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.93
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.93
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.93
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.93
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.93
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.93
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.93
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.93
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.93
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.93
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.93
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.93
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.93
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.93
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.93
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.93
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.93
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.93
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.93
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.93
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.92
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.92
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.92
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.92
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.92
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.92
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.92
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.92
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.92
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.92
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.92
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.92
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.92
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.92
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.92
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.92
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.92
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.92
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.92
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.92
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.92
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.92
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.92
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.92
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.92
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.92
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.92
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.92
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.92
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.92
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.92
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.92
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.92
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.92
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.92
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.92
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.92
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.92
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.92
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.92
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.92
COG1123	539	ATPase components of various ABC-type transport sy	99.92
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.92
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.92
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.92
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.92
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.92
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.92
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.92
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	99.92
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.92
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.92
PRK13409	590	putative ATPase RIL; Provisional	99.92
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.92
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.92
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.92
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.92
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.92
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.92
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.91
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.91
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.91
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.91
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.91
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.91
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.91
PRK10938	490	putative molybdenum transport ATP-binding protein	99.91
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.91
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.91
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.91
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.91
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.91
cd03246	173	ABCC_Protease_Secretion This family represents the	99.91
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.91
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.91
COG1123	539	ATPase components of various ABC-type transport sy	99.91
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.91
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.91
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.91
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.91
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.91
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.91
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.91
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.91
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.91
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.91
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.91
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.91
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.91
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.91
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.91
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.91
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.9
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.9
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.9
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.9
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.9
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.9
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.9
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.9
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.9
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.9
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.9
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.9
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.9
COG4181	228	Predicted ABC-type transport system involved in ly	99.9
PRK13409	590	putative ATPase RIL; Provisional	99.9
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.9
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.9
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.9
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.9
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.9
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.9
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.9
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.9
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.9
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.9
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.9
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	99.9
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.9
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.9
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.9
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.9
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.9
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.89
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.89
COG4172	534	ABC-type uncharacterized transport system, duplica	99.89
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.89
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.89
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.89
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.89
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.89
PLN03211	659	ABC transporter G-25; Provisional	99.89
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.89
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.89
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.89
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.89
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.89
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.89
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.89
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.89
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.89
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.89
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.89
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.89
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.89
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.89
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.88
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.88
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.88
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.88
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.88
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.88
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.88
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.88
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.88
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.87
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.87
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.87
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.87
PLN03140	1470	ABC transporter G family member; Provisional	99.87
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.87
PRK11147	635	ABC transporter ATPase component; Reviewed	99.87
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.87
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.87
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.87
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.87
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.87
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.87
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.87
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.87
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.87
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.87
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.87
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.87
PRK11147	635	ABC transporter ATPase component; Reviewed	99.87
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.87
COG4172	534	ABC-type uncharacterized transport system, duplica	99.86
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.86
COG0488	530	Uup ATPase components of ABC transporters with dup	99.86
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.86
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.86
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.86
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.86
PLN03073	718	ABC transporter F family; Provisional	99.86
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.86
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.86
COG4988	559	CydD ABC-type transport system involved in cytochr	99.86
PLN03073	718	ABC transporter F family; Provisional	99.86
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.86
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.86
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.86
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.86
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.85
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.85
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.85
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.85
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.85
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.85
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.85
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.85
KOG0061|consensus	613		99.85
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.84
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.84
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.84
KOG0055|consensus	1228		99.84
COG4987	573	CydC ABC-type transport system involved in cytochr	99.84
KOG0059|consensus	885		99.84
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.84
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.84
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.84
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.83
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.83
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.83
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.83
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.83
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.82
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.82
KOG0055|consensus	1228		99.82
KOG0058|consensus	716		99.82
PLN03232	1495	ABC transporter C family member; Provisional	99.82
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.82
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.82
PLN03140	1470	ABC transporter G family member; Provisional	99.81
PLN03130	1622	ABC transporter C family member; Provisional	99.81
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.8
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.8
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.8
PTZ00243	1560	ABC transporter; Provisional	99.8
PLN03232	1495	ABC transporter C family member; Provisional	99.8
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.8
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.79
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.79
PTZ00243	1560	ABC transporter; Provisional	99.78
PLN03130	1622	ABC transporter C family member; Provisional	99.78
COG0488	530	Uup ATPase components of ABC transporters with dup	99.78
KOG0057|consensus	591		99.78
cd03239	178	ABC_SMC_head The structural maintenance of chromos	99.78
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.77
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.77
KOG0062|consensus	582		99.77
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	99.76
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.76
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.76
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.76
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.76
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	99.75
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.73
COG4559	259	ABC-type hemin transport system, ATPase component	99.73
PRK10246	1047	exonuclease subunit SbcC; Provisional	99.73
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	99.72
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	99.72
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.72
PHA02562	562	46 endonuclease subunit; Provisional	99.71
KOG0927|consensus	614		99.7
PRK03918	880	chromosome segregation protein; Provisional	99.69
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	99.69
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	99.68
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.67
KOG0927|consensus	614		99.66
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.65
KOG0062|consensus	582		99.65
PRK10869	553	recombination and repair protein; Provisional	99.65
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.64
KOG0065|consensus	1391		99.64
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	99.63
KOG0066|consensus	807		99.63
PRK01156	895	chromosome segregation protein; Provisional	99.6
KOG0054|consensus	1381		99.59
COG4178	604	ABC-type uncharacterized transport system, permeas	99.59
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.58
KOG0056|consensus	790		99.58
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.58
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.58
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.56
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.55
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.55
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	99.53
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.53
KOG0054|consensus	1381		99.51
PRK02224	880	chromosome segregation protein; Provisional	99.48
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	99.48
cd03242	270	ABC_RecF RecF is a recombinational DNA repair ATPa	99.46
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	99.44
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	99.43
TIGR00611	365	recf recF protein. All proteins in this family for	99.41
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	99.4
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	99.4
KOG0066|consensus	807		99.39
PRK00064	361	recF recombination protein F; Reviewed	99.37
KOG0060|consensus	659		99.37
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.36
KOG2355|consensus	291		99.34
PRK00409	782	recombination and DNA strand exchange inhibitor pr	99.34
PF13304	303	AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T	99.31
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	99.28
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	99.28
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.26
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	99.23
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	99.22
KOG0063|consensus	592		99.2
KOG0063|consensus	592		99.2
KOG0065|consensus	1391		99.2
PF13558	90	SbcCD_C: Putative exonuclease SbcCD, C subunit; PD	99.13
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	99.11
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	99.03
KOG0064|consensus	728		99.02
PRK14079	349	recF recombination protein F; Provisional	99.01
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	99.01
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.0
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	98.87
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	98.77
PRK13695	174	putative NTPase; Provisional	98.66
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.6
PRK13891	852	conjugal transfer protein TrbE; Provisional	98.57
PF13175	415	AAA_15: AAA ATPase domain	98.57
PRK13830	818	conjugal transfer protein TrbE; Provisional	98.51
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	98.49
COG3910	233	Predicted ATPase [General function prediction only	98.44
PRK08533	230	flagellar accessory protein FlaH; Reviewed	98.41
PRK06067	234	flagellar accessory protein FlaH; Validated	98.38
PF13166	712	AAA_13: AAA domain	98.34
COG4637	373	Predicted ATPase [General function prediction only	98.3
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	98.29
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	98.24
PRK13873	811	conjugal transfer ATPase TrbE; Provisional	98.18
KOG0964|consensus	1200		98.13
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	98.07
PRK13898	800	type IV secretion system ATPase VirB4; Provisional	98.03
KOG0962|consensus	1294		98.03
PRK05399	854	DNA mismatch repair protein MutS; Provisional	97.94
KOG0996|consensus	1293		97.88
cd01128	249	rho_factor Transcription termination factor rho is	97.87
KOG0933|consensus	1174		97.87
COG0497	557	RecN ATPase involved in DNA repair [DNA replicatio	97.76
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	97.76
KOG0018|consensus	1141		97.67
PF00488	235	MutS_V: MutS domain V C-terminus.; InterPro: IPR00	97.62
PRK08699	325	DNA polymerase III subunit delta'; Validated	97.48
COG4694	758	Uncharacterized protein conserved in bacteria [Fun	97.41
PF13514	1111	AAA_27: AAA domain	97.3
TIGR01070	840	mutS1 DNA mismatch repair protein MutS.	97.16
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	97.1
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.07
smart00382	148	AAA ATPases associated with a variety of cellular	96.67
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	96.52
PRK06893	229	DNA replication initiation factor; Validated	96.46
TIGR03880	224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	96.46
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	96.43
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	96.41
PRK14088	440	dnaA chromosomal replication initiation protein; P	96.34
COG1195	363	RecF Recombinational DNA repair ATPase (RecF pathw	96.11
COG4938	374	Uncharacterized conserved protein [Function unknow	96.1
PRK04863	1486	mukB cell division protein MukB; Provisional	96.09
PF09818	448	ABC_ATPase: Predicted ATPase of the ABC class; Int	96.04
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	95.64
TIGR00929	785	VirB4_CagE type IV secretion/conjugal transfer ATP	95.42
PRK14087	450	dnaA chromosomal replication initiation protein; P	95.15
PRK08181	269	transposase; Validated	94.95
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	94.81
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	94.75
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	94.72
PRK09302	509	circadian clock protein KaiC; Reviewed	94.48
COG4913	1104	Uncharacterized protein conserved in bacteria [Fun	94.36
cd00561	159	CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B	94.31
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	94.29
PRK06526	254	transposase; Provisional	94.17

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.97  E-value=3.9e-30  Score=158.54  Aligned_cols=72  Identities=28%  Similarity=0.560  Sum_probs=70.0

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +||.++++.||.+||||||||++|||||+.+|+++++|||||+|||....++.+.+++++++|.|.+++||+
T Consensus       124 VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHE  195 (240)
T COG1126         124 VGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHE  195 (240)
T ss_pred             cCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEech
Confidence            588899999999999999999999999999999999999999999999999999999999999999999995

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.96  E-value=6.6e-30  Score=160.59  Aligned_cols=72  Identities=32%  Similarity=0.708  Sum_probs=70.0

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +||.+++|+++.+|||||+||+.|||||+++|++++|||||+|+|+.++..+.++|.+++++|+||+++|||
T Consensus       127 Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHD  198 (254)
T COG1121         127 VGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHD  198 (254)
T ss_pred             cCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            478899999999999999999999999999999999999999999999999999999999889999999997

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.96  E-value=2e-29  Score=157.49  Aligned_cols=72  Identities=28%  Similarity=0.545  Sum_probs=69.3

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +||.++.+++|.+||||||||++||||++.+|++++|||||+.||..++..+.+.+.+++++ +.||++||||
T Consensus       118 VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHd  190 (248)
T COG1116         118 VGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHD  190 (248)
T ss_pred             cCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCC
Confidence            58889999999999999999999999999999999999999999999999999999999765 9999999997

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.96  E-value=9.6e-29  Score=153.35  Aligned_cols=72  Identities=28%  Similarity=0.622  Sum_probs=67.1

Q ss_pred             CCCcchhc-CcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRH-RESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~-~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+.+..+ ++|.+|||||||||+||||++.+|++++.||||.+||..+.+.+++++.++.++ |.|+|++|||
T Consensus       129 lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd  202 (226)
T COG1136         129 LGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHD  202 (226)
T ss_pred             cCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence            47775556 889999999999999999999999999999999999999999999999999765 9999999997

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.95  E-value=3.8e-28  Score=151.50  Aligned_cols=72  Identities=33%  Similarity=0.611  Sum_probs=68.0

Q ss_pred             CCCcch-hcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEY-RHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~-~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+... .+++|.+|||||+||+++|||++.+|+++++||||+||||.+...+-++|+++++. |.|+++||||
T Consensus       132 VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHD  205 (263)
T COG1127         132 VGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHD  205 (263)
T ss_pred             cCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECC
Confidence            466655 89999999999999999999999999999999999999999999999999999876 9999999997

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.95  E-value=1.7e-27  Score=145.76  Aligned_cols=72  Identities=26%  Similarity=0.584  Sum_probs=67.8

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+.+..++++.+|||||+||+++|+|++.+|+++||||||+|||+.+++.+.+++.+++++|.|||++||+
T Consensus       126 ~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~  197 (216)
T TIGR00960       126 VGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHD  197 (216)
T ss_pred             cCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            467777889999999999999999999999999999999999999999999999999987678999999997

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.95  E-value=1e-27  Score=153.77  Aligned_cols=72  Identities=33%  Similarity=0.622  Sum_probs=69.1

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+.++.++||.+|||||||||+|||||+.+|++++.||||+.|||.+.+.+.++|+++.++ |.||+++||.
T Consensus       129 VgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHE  201 (339)
T COG1135         129 VGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHE  201 (339)
T ss_pred             cCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEech
Confidence            58899999999999999999999999999999999999999999999999999999999765 9999999994

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.95  E-value=3.5e-27  Score=143.61  Aligned_cols=72  Identities=29%  Similarity=0.550  Sum_probs=68.0

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+.+..++++.+||||||||+++|+|++.+|+++||||||+|||+.+++.+.+++++++++|.|+|++||+
T Consensus       114 ~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~  185 (205)
T cd03226         114 LDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHD  185 (205)
T ss_pred             cCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            467778899999999999999999999999999999999999999999999999999987778999999996

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.95  E-value=3.3e-27  Score=144.01  Aligned_cols=72  Identities=36%  Similarity=0.693  Sum_probs=67.5

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +++.+..++++.+|||||+||+++|+|++.+|+++||||||+|||+.+++.+.+.+.+++++|.|||++||+
T Consensus       122 ~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~  193 (211)
T cd03225         122 VGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHD  193 (211)
T ss_pred             cCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence            466677889999999999999999999999999999999999999999999999999987678999999996

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.95  E-value=3.3e-27  Score=142.35  Aligned_cols=72  Identities=33%  Similarity=0.673  Sum_probs=67.9

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+.+..++++.+||+||+||+++|+|++.+|+++||||||+|||+.+++.+.+++.+++++|.|||++||+
T Consensus       115 ~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~  186 (190)
T TIGR01166       115 VGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHD  186 (190)
T ss_pred             cCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeec
Confidence            467777899999999999999999999999999999999999999999999999999987778999999996

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.95  E-value=4.3e-27  Score=143.77  Aligned_cols=72  Identities=36%  Similarity=0.753  Sum_probs=67.5

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +++++..++++.+||||||||+++|+|++.+|+++||||||+|||+.+++.+.+.+.+++++|.|||++||+
T Consensus       120 ~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~  191 (213)
T cd03235         120 VGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHD  191 (213)
T ss_pred             cCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            366677889999999999999999999999999999999999999999999999999987678999999996

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.94  E-value=1.2e-27  Score=149.42  Aligned_cols=72  Identities=35%  Similarity=0.662  Sum_probs=68.8

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+.+..++++.+||||||||++||.+++.+|+++||||||+|||+..++.+.++++++.++ |.|+|++|||
T Consensus       126 vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd  198 (235)
T COG1122         126 VGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHD  198 (235)
T ss_pred             cCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCc
Confidence            47788899999999999999999999999999999999999999999999999999999877 7999999997

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.94  E-value=3.6e-27  Score=144.09  Aligned_cols=72  Identities=32%  Similarity=0.544  Sum_probs=67.3

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~   72 (72)
                      +++.+..++++.+||||||||+++|++++.+|+++||||||+|||+.+++.+.+++.++++ .|.|||++||+
T Consensus       118 ~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~  190 (213)
T cd03259         118 VGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHD  190 (213)
T ss_pred             cCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence            4677778899999999999999999999999999999999999999999999999999876 48999999996

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.94  E-value=4.7e-27  Score=143.92  Aligned_cols=72  Identities=29%  Similarity=0.575  Sum_probs=67.6

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~   72 (72)
                      +|+++..++++.+||||||||+++|+|++.+|+++||||||+|||+.+++.+.+++.++.+ .|.|||++||+
T Consensus       128 ~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~  200 (218)
T cd03255         128 VGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHD  200 (218)
T ss_pred             cCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence            4677778899999999999999999999999999999999999999999999999999876 58999999996

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.94  E-value=4.1e-27  Score=150.62  Aligned_cols=72  Identities=44%  Similarity=0.816  Sum_probs=67.5

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-ceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTG-QSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g-~til~~~h~   72 (72)
                      ||+.+..+++++.||+|||||++||+||+.+|+++||||||+||||.++..++++|++++++| .||+++||.
T Consensus       124 ~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~  196 (293)
T COG1131         124 FGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHI  196 (293)
T ss_pred             cCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCc
Confidence            467766688999999999999999999999999999999999999999999999999998876 899999995

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.94  E-value=4.9e-27  Score=150.27  Aligned_cols=72  Identities=42%  Similarity=0.804  Sum_probs=68.3

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+.+..++++.+||||||||+++|+|++.+|+++||||||+|||+.+++.+++++++++++|.|||++||+
T Consensus       112 ~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~  183 (302)
T TIGR01188       112 FELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHY  183 (302)
T ss_pred             cCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence            467778899999999999999999999999999999999999999999999999999987779999999996

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.94  E-value=6.3e-27  Score=143.02  Aligned_cols=72  Identities=29%  Similarity=0.624  Sum_probs=67.3

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +++.+..++++.+|||||+||+++|++++.+|+++||||||+|||+.++..+.++++++.++|.|||++||+
T Consensus       125 ~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~  196 (214)
T TIGR02673       125 VGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHD  196 (214)
T ss_pred             cCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence            366667788999999999999999999999999999999999999999999999999987678999999996

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.94  E-value=2.8e-27  Score=147.57  Aligned_cols=71  Identities=34%  Similarity=0.619  Sum_probs=67.0

Q ss_pred             CC-cchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            2 GL-TEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         2 ~l-~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      |+ ..+.+++|.+|||||+||++|||||+.+|+++|+||||+.||...+..+++++.+++++ +.|+||+|||
T Consensus       129 gL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHd  201 (252)
T COG1124         129 GLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHD  201 (252)
T ss_pred             CCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCc
Confidence            55 36889999999999999999999999999999999999999999999999999999875 8999999997

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.94  E-value=3.6e-27  Score=148.61  Aligned_cols=72  Identities=39%  Similarity=0.762  Sum_probs=67.9

Q ss_pred             CCCc--chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLT--EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~--~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +||+  ++.+++|.+|||||+||+.++|||+.+|++++|||||++|||.++..+.+.+.++.++ |+||+|+|||
T Consensus       121 vgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHD  195 (309)
T COG1125         121 VGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHD  195 (309)
T ss_pred             hCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecC
Confidence            3665  4899999999999999999999999999999999999999999999999999999776 9999999997

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.94  E-value=8.1e-27  Score=149.75  Aligned_cols=72  Identities=42%  Similarity=0.738  Sum_probs=68.2

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +++.+..++++.+||+|||||++||+|++++|+++||||||+|||+.+++.+++++++++++|.|||++||+
T Consensus       126 ~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~  197 (306)
T PRK13537        126 AKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHF  197 (306)
T ss_pred             cCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence            467778899999999999999999999999999999999999999999999999999987779999999996

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.94  E-value=7.3e-27  Score=142.09  Aligned_cols=72  Identities=24%  Similarity=0.555  Sum_probs=69.5

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +||.++++..|.+||||||||++||||++.+|+++|.||||.+|||....+++.++.++.+.|.||+|.|||
T Consensus       125 VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd  196 (223)
T COG2884         125 VGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHD  196 (223)
T ss_pred             hccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEecc
Confidence            478889999999999999999999999999999999999999999999999999999998889999999997

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.94  E-value=9.4e-27  Score=144.10  Aligned_cols=72  Identities=32%  Similarity=0.556  Sum_probs=67.3

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+.+..++++.+||||||||++||+|++.+|+++||||||+|||+.+++.+.+.++++.++ |.|||++||+
T Consensus       124 ~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~  196 (235)
T cd03261         124 VGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHD  196 (235)
T ss_pred             cCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecC
Confidence            46777788999999999999999999999999999999999999999999999999998764 8999999996

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.94  E-value=1.1e-26  Score=142.71  Aligned_cols=72  Identities=33%  Similarity=0.608  Sum_probs=67.0

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~   72 (72)
                      +++++..++++.+||||||||+++|+|++.+|+++||||||+|||+.+++.++++++++.+ .|.|||++||+
T Consensus       119 ~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~  191 (220)
T cd03293         119 VGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHD  191 (220)
T ss_pred             cCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence            4677778899999999999999999999999999999999999999999999999999865 48999999996

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.94  E-value=1.1e-26  Score=141.84  Aligned_cols=72  Identities=28%  Similarity=0.598  Sum_probs=67.4

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+++..++++.+|||||+||+++|+|++.+|+++||||||+|||+.+++.+.+.++++.++|.|+|++||+
T Consensus       124 ~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~  195 (214)
T cd03292         124 VGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHA  195 (214)
T ss_pred             cCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence            366777888999999999999999999999999999999999999999999999999987678999999996

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.94  E-value=1.1e-26  Score=142.44  Aligned_cols=72  Identities=25%  Similarity=0.539  Sum_probs=67.3

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+++..++++.+|||||+||+++|++++.+|+++||||||+|||+.+++.+.+.+.++.++ |.|||++||+
T Consensus       129 ~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~  201 (221)
T TIGR02211       129 VGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHD  201 (221)
T ss_pred             cCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            46777788999999999999999999999999999999999999999999999999998764 8999999996

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.94  E-value=1.1e-26  Score=151.28  Aligned_cols=72  Identities=31%  Similarity=0.587  Sum_probs=68.5

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+.+..++++.+||||||||++|||||+++|+++|+||||++||+.++..++++++++.++ |.|||++||+
T Consensus       128 vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~  200 (343)
T TIGR02314       128 VGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHE  200 (343)
T ss_pred             cCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            47888899999999999999999999999999999999999999999999999999999765 9999999996

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.94  E-value=1.4e-26  Score=143.13  Aligned_cols=72  Identities=33%  Similarity=0.653  Sum_probs=67.7

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+++..++++.+|||||+||+++|+|++.+|+++||||||+|||+.+++.++++++++.++|.|||++||+
T Consensus       131 ~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~  202 (236)
T cd03219         131 VGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHD  202 (236)
T ss_pred             cCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence            467777889999999999999999999999999999999999999999999999999987678999999996

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.94  E-value=1.5e-26  Score=148.10  Aligned_cols=72  Identities=43%  Similarity=0.704  Sum_probs=67.9

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +++.+..++++.+||||||||+++|+|++.+|+++||||||+|||+.+++.++++++++.++|.|||++||+
T Consensus       123 ~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~  194 (303)
T TIGR01288       123 ARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHF  194 (303)
T ss_pred             CCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence            466777899999999999999999999999999999999999999999999999999987779999999996

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.94  E-value=1.6e-26  Score=141.14  Aligned_cols=72  Identities=24%  Similarity=0.523  Sum_probs=67.5

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+++..++++.+|||||+||+++|++++.+|+++||||||+|||+.+++.+.+.+++++++ |.|||++||+
T Consensus       118 ~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~  190 (213)
T cd03301         118 LQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHD  190 (213)
T ss_pred             cCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence            46777789999999999999999999999999999999999999999999999999998764 8999999996

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.94  E-value=1.7e-26  Score=141.86  Aligned_cols=72  Identities=40%  Similarity=0.771  Sum_probs=67.7

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +++.+..++++.+||||||||+++|+|++.+|+++|+||||+|||+.+++.+.+.+.++.++ |.|||++||+
T Consensus       119 ~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~  191 (220)
T cd03265         119 VGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHY  191 (220)
T ss_pred             cCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            46777788999999999999999999999999999999999999999999999999998776 8999999996

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.94  E-value=1.8e-26  Score=150.03  Aligned_cols=72  Identities=43%  Similarity=0.719  Sum_probs=68.4

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +++.+..++++.+||+|||||++||+|++++|+++||||||+|||+.+++.++++++++.++|.|||++||+
T Consensus       160 ~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~  231 (340)
T PRK13536        160 ARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHF  231 (340)
T ss_pred             cCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence            467778899999999999999999999999999999999999999999999999999987779999999996

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.94  E-value=1.4e-26  Score=141.12  Aligned_cols=72  Identities=33%  Similarity=0.648  Sum_probs=67.4

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +++++..++++.+||||||||+++|++++.+|+++||||||+|||+.+++.+.+++.+++++|.|+|++||+
T Consensus       114 ~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~  185 (208)
T cd03268         114 VGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHL  185 (208)
T ss_pred             cCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence            366677888999999999999999999999999999999999999999999999999987778999999996

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.94  E-value=2.4e-26  Score=140.27  Aligned_cols=72  Identities=28%  Similarity=0.545  Sum_probs=67.6

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+++..++++.+|||||+||+++|+|++.+|+++||||||+|||+.+++.+.+.+++++++|.|||++||+
T Consensus       123 ~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~  194 (213)
T cd03262         123 VGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHE  194 (213)
T ss_pred             cCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence            466677889999999999999999999999999999999999999999999999999987778999999996

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.94  E-value=2.2e-26  Score=142.49  Aligned_cols=72  Identities=28%  Similarity=0.616  Sum_probs=67.0

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +++.+..++++.+||||||||+++|++++.+|+++||||||+|||+.+++.+.++++++.++ |.|||++||+
T Consensus       132 ~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~  204 (241)
T cd03256         132 VGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQ  204 (241)
T ss_pred             cCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            46667788899999999999999999999999999999999999999999999999998764 8999999996

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.94  E-value=1.6e-26  Score=141.53  Aligned_cols=72  Identities=35%  Similarity=0.694  Sum_probs=67.7

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+++..++++.+|||||+||+++|+|++.+|+++||||||+|||+.+++.+.+.+.++.++|.|||++||+
T Consensus       124 ~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~  195 (218)
T cd03266         124 LGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHI  195 (218)
T ss_pred             cCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            467777889999999999999999999999999999999999999999999999999987678999999996

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.94  E-value=2.1e-26  Score=142.58  Aligned_cols=72  Identities=33%  Similarity=0.546  Sum_probs=67.3

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+.+..++++.+||||||||+++|++++.+|+++||||||+|||+.+++.+.+.+.++.++ |.|||++||+
T Consensus       102 ~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~  174 (230)
T TIGR01184       102 VGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHD  174 (230)
T ss_pred             cCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            46777788999999999999999999999999999999999999999999999999998764 8999999996

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=2.6e-26  Score=142.10  Aligned_cols=72  Identities=26%  Similarity=0.605  Sum_probs=67.3

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~   72 (72)
                      +|+++..++++.+||||||||+++|++++.+|+++||||||+|||+.+++.+.+++.++++ .|.|||++||+
T Consensus       133 ~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~  205 (233)
T PRK11629        133 VGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHD  205 (233)
T ss_pred             cCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            4677778889999999999999999999999999999999999999999999999999865 48999999996

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.94  E-value=3.2e-26  Score=139.11  Aligned_cols=72  Identities=31%  Similarity=0.634  Sum_probs=67.6

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+++..++++.+||+||+||+++|+|++++|+++||||||+|||+.+++.+.++++++.++|.|+|++||+
T Consensus       122 ~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~  193 (206)
T TIGR03608       122 VGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHD  193 (206)
T ss_pred             cCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            467778889999999999999999999999999999999999999999999999999987678999999996

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.94  E-value=2.7e-26  Score=140.48  Aligned_cols=72  Identities=35%  Similarity=0.577  Sum_probs=67.2

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+.+..++++.+||||||||+++|++++.+|+++||||||+|||+.+++.+.+++++++++ |.|+|++||+
T Consensus       119 ~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~  191 (214)
T cd03297         119 LGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHD  191 (214)
T ss_pred             cCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecC
Confidence            36666778899999999999999999999999999999999999999999999999998765 8999999996

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.94  E-value=2.7e-26  Score=142.40  Aligned_cols=72  Identities=28%  Similarity=0.586  Sum_probs=66.9

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+.+..++++.+|||||+||++||+|++.+|+++||||||+|||+.+++.+.+++.++.++ |.|||++||+
T Consensus       133 ~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~  205 (243)
T TIGR02315       133 VGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQ  205 (243)
T ss_pred             cCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence            35667778899999999999999999999999999999999999999999999999998664 8999999996

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.94  E-value=2.4e-26  Score=142.66  Aligned_cols=72  Identities=26%  Similarity=0.440  Sum_probs=67.3

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+++..++++.+||+||+||+++|+|++.+|+++||||||+|||+.+++.+.+++.+++++ |.|||++||+
T Consensus       124 ~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~  196 (239)
T cd03296         124 VQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHD  196 (239)
T ss_pred             cCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence            46667788899999999999999999999999999999999999999999999999998765 8999999996

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=2.4e-26  Score=150.23  Aligned_cols=72  Identities=19%  Similarity=0.454  Sum_probs=68.5

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+++..++++.+||||||||++||||++.+|+++||||||++||+..++.+.+.++++.++ |.|+|++|||
T Consensus       122 ~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd  194 (356)
T PRK11650        122 LELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHD  194 (356)
T ss_pred             cCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            47888899999999999999999999999999999999999999999999999999998765 9999999997

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.94  E-value=7.7e-27  Score=143.21  Aligned_cols=72  Identities=38%  Similarity=0.698  Sum_probs=69.3

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      |+|.++.|+++..+|.||||||+||||++++|++++|||||+|||..+.+.+.+++++++++|++|+|+||.
T Consensus       121 l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~  192 (245)
T COG4555         121 LQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHI  192 (245)
T ss_pred             hChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEeccc
Confidence            467889999999999999999999999999999999999999999999999999999998889999999995

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.94  E-value=3.2e-26  Score=141.29  Aligned_cols=72  Identities=31%  Similarity=0.635  Sum_probs=67.5

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +++++..++.+.+||+||+||+++|+|++.+|+++||||||+|||+.+++.+.++++++.++|.|+|++||+
T Consensus       121 ~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~  192 (232)
T cd03218         121 FHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHN  192 (232)
T ss_pred             cCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            366777889999999999999999999999999999999999999999999999999987778999999996

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.94  E-value=3e-26  Score=139.83  Aligned_cols=72  Identities=35%  Similarity=0.683  Sum_probs=67.3

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+++..++++.+||||||||+++|++++.+|+++||||||+|||+.+++.+.+.++++.++|.|||++||+
T Consensus       116 ~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~  187 (210)
T cd03269         116 LELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQ  187 (210)
T ss_pred             cCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCC
Confidence            366677888999999999999999999999999999999999999999999999999987678999999996

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.94  E-value=3.7e-26  Score=138.59  Aligned_cols=72  Identities=31%  Similarity=0.491  Sum_probs=67.5

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +++++..++++.+||+||+||+++|++++.+|++++|||||+|||+.+++.+.+.+.+++++|.|+|++||+
T Consensus       115 ~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~  186 (198)
T TIGR01189       115 VGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQ  186 (198)
T ss_pred             cCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcc
Confidence            467777889999999999999999999999999999999999999999999999999987778999999996

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.94  E-value=3.6e-26  Score=139.25  Aligned_cols=72  Identities=31%  Similarity=0.508  Sum_probs=67.5

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+.+..++++.+|||||+||+++|+|++++|+++++||||+|||+.+++.+.+++++++++|.|+|++||+
T Consensus       117 ~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~  188 (204)
T PRK13538        117 VGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQ  188 (204)
T ss_pred             cCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence            467677889999999999999999999999999999999999999999999999999987678999999996

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.94  E-value=4.5e-26  Score=138.68  Aligned_cols=72  Identities=31%  Similarity=0.527  Sum_probs=67.2

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +++.+..++++.+|||||+||+++|++++.+|+++||||||+|||+..++.+.+.+.++.++|.|+|++||+
T Consensus       113 ~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~  184 (201)
T cd03231         113 VGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQ  184 (201)
T ss_pred             cCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence            366677888999999999999999999999999999999999999999999999999887778999999996

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.94  E-value=4.4e-26  Score=142.02  Aligned_cols=72  Identities=28%  Similarity=0.509  Sum_probs=67.4

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+.+..++++.+|||||+||+++|++++.+|+++||||||+|||+.+++.+.+++.++.++|.|||++||+
T Consensus       132 ~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~  203 (250)
T PRK11264        132 VGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHE  203 (250)
T ss_pred             cCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            366677788999999999999999999999999999999999999999999999999987678999999996

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.94  E-value=2.8e-26  Score=144.61  Aligned_cols=72  Identities=29%  Similarity=0.560  Sum_probs=68.6

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~   72 (72)
                      +|+.+.+++++.+||||||||+.|||||+++|++++|||||++||...+-+++++++++.+ +|.|++++.||
T Consensus       126 ~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHD  198 (258)
T COG1120         126 LGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHD  198 (258)
T ss_pred             hCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence            3678899999999999999999999999999999999999999999999999999999985 49999999997

>PRK10908 cell division protein FtsE; Provisional

Probab=99.94  E-value=4.6e-26  Score=140.05  Aligned_cols=72  Identities=21%  Similarity=0.487  Sum_probs=67.2

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +++.+..++++.+||+||+||+++|+|++.+|+++||||||+|||+.+++.+.+.+.++.++|.|+|++||+
T Consensus       125 ~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~  196 (222)
T PRK10908        125 VGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHD  196 (222)
T ss_pred             cCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            356667788999999999999999999999999999999999999999999999999987678999999996

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.94  E-value=4.1e-26  Score=140.61  Aligned_cols=72  Identities=26%  Similarity=0.549  Sum_probs=67.0

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +++.+..++++.+|||||+||+++|++++.+|+++||||||+|||+.+++.+.+++++++++ |.|||++||+
T Consensus       134 ~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~  206 (228)
T PRK10584        134 LGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHD  206 (228)
T ss_pred             cCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence            46667778899999999999999999999999999999999999999999999999998664 8999999996

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.94  E-value=4.2e-26  Score=139.24  Aligned_cols=72  Identities=26%  Similarity=0.602  Sum_probs=67.2

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+++..++++.+||+|||||+++|+|++.+|+++||||||+|||+.+++.+.+.++++.++ |.|||++||+
T Consensus       116 ~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~  188 (211)
T cd03298         116 VGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQ  188 (211)
T ss_pred             cCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence            36677788999999999999999999999999999999999999999999999999998754 8999999996

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.93  E-value=3.6e-26  Score=149.72  Aligned_cols=72  Identities=24%  Similarity=0.440  Sum_probs=68.4

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT--GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~--g~til~~~h~   72 (72)
                      +++++..++++.+||||||||+++||||+.+|+++||||||++||+..+..+.+.++++.++  |.|+|++|||
T Consensus       125 ~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd  198 (362)
T TIGR03258       125 VGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHD  198 (362)
T ss_pred             cCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence            47888899999999999999999999999999999999999999999999999999998765  7999999997

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=5.1e-26  Score=143.57  Aligned_cols=72  Identities=31%  Similarity=0.592  Sum_probs=67.5

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+.+..++++.+|||||+||+++|++++.+|+++||||||+|||+.++..+.+++.++.++|.|||++||+
T Consensus       124 ~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~  195 (271)
T PRK13638        124 VDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHD  195 (271)
T ss_pred             cCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            366677889999999999999999999999999999999999999999999999999987678999999996

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=5.2e-26  Score=146.08  Aligned_cols=72  Identities=33%  Similarity=0.658  Sum_probs=67.7

Q ss_pred             CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+. +..++++.+||||||||++||++++.+|+++||||||+|||+.+++.+.+++.+++++|.|||++|||
T Consensus       152 ~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd  224 (305)
T PRK13651        152 VGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD  224 (305)
T ss_pred             cCCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeC
Confidence            4675 67899999999999999999999999999999999999999999999999999987779999999997

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=5.4e-26  Score=143.90  Aligned_cols=72  Identities=25%  Similarity=0.539  Sum_probs=68.1

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+.+..++++.+|||||+||+++|+|++.+|+++||||||+|||+.++..+.+++++++++|.|||++||+
T Consensus       126 ~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~  197 (274)
T PRK13647        126 VRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHD  197 (274)
T ss_pred             CCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            467778899999999999999999999999999999999999999999999999999987678999999996

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.93  E-value=5.4e-26  Score=138.83  Aligned_cols=72  Identities=26%  Similarity=0.442  Sum_probs=67.1

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+.+..++++.+|||||+||+++|++++.+|+++||||||+|||+.+++.+.+.+.++.++|.|+|++||+
T Consensus       115 ~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~  186 (207)
T PRK13539        115 VGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHI  186 (207)
T ss_pred             cCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            366667788999999999999999999999999999999999999999999999999887779999999996

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.93  E-value=5.4e-26  Score=143.50  Aligned_cols=72  Identities=31%  Similarity=0.559  Sum_probs=67.4

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+.+..++++.+|||||+||++||+|++.+|+++||||||+|||+.+++.+.+++.++.++ |.|||++||+
T Consensus       148 ~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~  220 (269)
T cd03294         148 VGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHD  220 (269)
T ss_pred             cCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            46777789999999999999999999999999999999999999999999999999998654 8999999996

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.93  E-value=6.9e-26  Score=135.93  Aligned_cols=72  Identities=32%  Similarity=0.610  Sum_probs=67.2

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+.+..++.+.+||+||+||+++||+++.+|+++||||||+|||+.+++.+.+.+.+++++ +.|+|++||+
T Consensus        85 ~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~  157 (180)
T cd03214          85 LGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHD  157 (180)
T ss_pred             cCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            46777788899999999999999999999999999999999999999999999999998766 8999999996

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.93  E-value=5.4e-26  Score=140.45  Aligned_cols=72  Identities=33%  Similarity=0.592  Sum_probs=67.4

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +++++..++++.+||+||+||+++|++++.+|+++||||||+|||+.+++.+.+.+.+++++ |.|||++||+
T Consensus       128 ~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~  200 (233)
T cd03258         128 VGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHE  200 (233)
T ss_pred             CCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence            46677788999999999999999999999999999999999999999999999999998765 8999999996

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.93  E-value=4.9e-26  Score=149.15  Aligned_cols=72  Identities=35%  Similarity=0.633  Sum_probs=68.3

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +||+++.++++.+||||||||++||||++.+|+++||||||++||+.+++.+.+.+.++.++ |+|||++|||
T Consensus       117 vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd  189 (363)
T TIGR01186       117 VGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHD  189 (363)
T ss_pred             cCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            47888899999999999999999999999999999999999999999999999999998754 8999999997

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=6.9e-26  Score=144.24  Aligned_cols=72  Identities=33%  Similarity=0.671  Sum_probs=66.9

Q ss_pred             CCCc--chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLT--EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~--~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+.  +..++++.+|||||+||++||+|++.+|+++||||||+|||+.++..+++++.++.++ |.|||++||+
T Consensus       130 ~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd  204 (287)
T PRK13637        130 VGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHS  204 (287)
T ss_pred             cCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            3565  5688999999999999999999999999999999999999999999999999998765 8999999996

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=5.5e-26  Score=147.78  Aligned_cols=72  Identities=33%  Similarity=0.623  Sum_probs=67.8

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+.+..++++.+||||||||++||+|++.+|+++||||||+|||+.+++.++++|+++.++ |.|||++||+
T Consensus       128 ~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~  200 (343)
T PRK11153        128 VGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHE  200 (343)
T ss_pred             cCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            46777889999999999999999999999999999999999999999999999999998765 8999999996

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.93  E-value=5.8e-26  Score=143.30  Aligned_cols=72  Identities=32%  Similarity=0.504  Sum_probs=67.4

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+.+..++++.+||||||||++||++++.+|+++||||||+|||+.+++.+.++++++.++ |.|||++||+
T Consensus       131 ~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~  203 (269)
T PRK11831        131 VGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHD  203 (269)
T ss_pred             cCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecC
Confidence            46777788999999999999999999999999999999999999999999999999998765 8999999996

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=7.9e-26  Score=143.89  Aligned_cols=72  Identities=29%  Similarity=0.614  Sum_probs=67.4

Q ss_pred             CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|++ ...++++.+||||||||+++|+|++.+|+++||||||+|||+.+++.+.+++.++.+.|.|||++||+
T Consensus       132 ~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~  204 (287)
T PRK13641        132 VGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHN  204 (287)
T ss_pred             cCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            4675 57899999999999999999999999999999999999999999999999999987679999999996

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.93  E-value=7.4e-26  Score=139.77  Aligned_cols=72  Identities=25%  Similarity=0.375  Sum_probs=67.4

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +++++..++++.+||+|||||+++|++++++|+++||||||+|||+.+++.+.+.+.++.++|.|||++||+
T Consensus       130 ~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~  201 (224)
T cd03220         130 SELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHD  201 (224)
T ss_pred             cCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            366777888999999999999999999999999999999999999999999999999987678999999996

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.93  E-value=7e-26  Score=140.56  Aligned_cols=72  Identities=35%  Similarity=0.649  Sum_probs=67.6

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+++..++++.+||+||+||+++|+|++.+|+++||||||+|||+.+++.+.+++.+++++|.|+|++||+
T Consensus       124 ~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~  195 (240)
T PRK09493        124 VGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHE  195 (240)
T ss_pred             cCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence            467777889999999999999999999999999999999999999999999999999987678999999996

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.93  E-value=7.2e-26  Score=139.19  Aligned_cols=71  Identities=31%  Similarity=0.547  Sum_probs=65.9

Q ss_pred             CCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            2 GLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         2 ~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      ++. ...++++.+|||||+||+++|++++.+|+++||||||+|||+.+++.+.+.+.++.++ |.|||++||+
T Consensus       133 ~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~  205 (228)
T cd03257         133 GLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHD  205 (228)
T ss_pred             CCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence            553 4678899999999999999999999999999999999999999999999999998765 8999999996

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=6.4e-26  Score=141.64  Aligned_cols=72  Identities=26%  Similarity=0.597  Sum_probs=67.4

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+.+..++++.+|||||+||+++|+|++.+|+++||||||+|||+.+++.+.+.|.+++++ |.|||++||+
T Consensus       141 ~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~  213 (255)
T PRK11300        141 VGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHD  213 (255)
T ss_pred             CChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCC
Confidence            36667788999999999999999999999999999999999999999999999999998765 8999999996

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=7.3e-26  Score=143.61  Aligned_cols=72  Identities=31%  Similarity=0.569  Sum_probs=68.2

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+++..++++.+|||||+||++||+|++.+|+++||||||+|||+.+++.+.+.+.+++++ |.|||++||+
T Consensus       128 ~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~  200 (279)
T PRK13650        128 VGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHD  200 (279)
T ss_pred             CCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence            47778889999999999999999999999999999999999999999999999999998765 9999999996

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=7.7e-26  Score=140.50  Aligned_cols=72  Identities=28%  Similarity=0.564  Sum_probs=67.7

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+++..++++.+|||||+||+++|+|++.+|+++||||||+|||+.+++.+.+.+.++.++|.|+|++||+
T Consensus       129 ~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~  200 (242)
T PRK11124        129 LRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHE  200 (242)
T ss_pred             cCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence            467777899999999999999999999999999999999999999999999999999987678999999996

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=8.6e-26  Score=142.97  Aligned_cols=72  Identities=32%  Similarity=0.522  Sum_probs=68.1

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+++..++++..||+||+||+++|+|++.+|+++||||||+|||+.++..+++.+++++++|.|||++||+
T Consensus       124 ~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~  195 (274)
T PRK13644        124 IGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHN  195 (274)
T ss_pred             CCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence            467778899999999999999999999999999999999999999999999999999987679999999996

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.93  E-value=8.9e-26  Score=139.25  Aligned_cols=72  Identities=33%  Similarity=0.604  Sum_probs=67.5

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +++++..++++.+||+|||||+++|++++.+|+++|+||||+|||+.+++.+.+++.++.++|.|+|++||+
T Consensus       101 ~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~  172 (223)
T TIGR03771       101 VGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHD  172 (223)
T ss_pred             hCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence            366677888999999999999999999999999999999999999999999999999987679999999996

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=8.7e-26  Score=141.34  Aligned_cols=72  Identities=28%  Similarity=0.469  Sum_probs=67.6

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+.+..++++.+|||||+||+++|+|++.+|+++||||||+|||+.+++.+.+.+.++.++|.|||++||+
T Consensus       126 ~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~  197 (255)
T PRK11231        126 TRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHD  197 (255)
T ss_pred             cCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECC
Confidence            366777899999999999999999999999999999999999999999999999999987678999999996

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=7.2e-26  Score=147.79  Aligned_cols=72  Identities=25%  Similarity=0.467  Sum_probs=68.2

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+.+..++++.+||||||||+++||||+.+|+++||||||++||+..++.+.+.++++.++ |.|+|++|||
T Consensus       124 ~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd  196 (351)
T PRK11432        124 VDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHD  196 (351)
T ss_pred             cCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence            46778899999999999999999999999999999999999999999999999999998765 8999999997

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.93  E-value=7e-26  Score=148.52  Aligned_cols=72  Identities=25%  Similarity=0.557  Sum_probs=67.9

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+++..++++.+||||||||+++||||+.+|+++||||||++||+..++.+.+.|+++.++ |.|+|++|||
T Consensus       121 lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd  193 (369)
T PRK11000        121 LQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD  193 (369)
T ss_pred             cCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCC
Confidence            46777889999999999999999999999999999999999999999999999999998765 8999999997

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.93  E-value=8.7e-26  Score=146.42  Aligned_cols=72  Identities=32%  Similarity=0.552  Sum_probs=66.7

Q ss_pred             CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +++. ...++++.+|||||+||++||+|++.+|+++|+||||++||+.++..+.++++++.++ |.|+|++|||
T Consensus       148 vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHd  221 (331)
T PRK15079        148 VGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHD  221 (331)
T ss_pred             cCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence            3563 4678999999999999999999999999999999999999999999999999998765 9999999997

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.93  E-value=1e-25  Score=147.14  Aligned_cols=72  Identities=29%  Similarity=0.474  Sum_probs=68.3

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +++.+..++++.+||||||||+++||||+.+|+++||||||++||+..++.+.+.++++.++ |.|+|++|||
T Consensus       124 ~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd  196 (353)
T PRK10851        124 VQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHD  196 (353)
T ss_pred             cCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            46778899999999999999999999999999999999999999999999999999998765 8999999997

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.93  E-value=8.1e-26  Score=137.99  Aligned_cols=71  Identities=35%  Similarity=0.710  Sum_probs=66.1

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +++.+..++++.+|||||+||+++|+|++.+|+++||||||+|||+.+++.+.+.++++++ +.|+|++||+
T Consensus       118 ~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~  188 (211)
T cd03264         118 VNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHI  188 (211)
T ss_pred             CCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCC
Confidence            3666777899999999999999999999999999999999999999999999999999875 5899999996

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.93  E-value=1.1e-25  Score=141.63  Aligned_cols=72  Identities=29%  Similarity=0.557  Sum_probs=67.2

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~   72 (72)
                      +|+.+..++++.+||||||||+++|++++.+|+++||||||+|||+.+++.+.+++.++.+ .|.|||++||+
T Consensus       121 ~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd  193 (257)
T PRK11247        121 VGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHD  193 (257)
T ss_pred             cCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence            4677778899999999999999999999999999999999999999999999999999865 48999999996

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.93  E-value=1.1e-25  Score=145.49  Aligned_cols=72  Identities=32%  Similarity=0.558  Sum_probs=67.8

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +++++..++++.+||||||||+++|||++.+|+++||||||+|||+..++.+.+.++++.++ |.|+|++||+
T Consensus        88 ~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd  160 (325)
T TIGR01187        88 VQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHD  160 (325)
T ss_pred             cCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            46777889999999999999999999999999999999999999999999999999998765 8999999996

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.93  E-value=1.2e-25  Score=139.25  Aligned_cols=72  Identities=35%  Similarity=0.624  Sum_probs=67.1

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~   72 (72)
                      +|+.+..++++.+|||||+||+++|+|++.+|+++||||||+|||+.+++.+.+.+.++.+ .|.|+|++||+
T Consensus       120 ~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~  192 (236)
T TIGR03864       120 LGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHL  192 (236)
T ss_pred             cCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence            4667778899999999999999999999999999999999999999999999999999875 58999999996

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.93  E-value=1.2e-25  Score=148.91  Aligned_cols=72  Identities=26%  Similarity=0.492  Sum_probs=68.3

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+.+..++++.+||||||||++|||||+++|+++||||||+|||+.++..++++++++.++|.|||++||+
T Consensus       127 vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHd  198 (402)
T PRK09536        127 TGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHD  198 (402)
T ss_pred             cCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence            467788899999999999999999999999999999999999999999999999999997778999999996

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=1.2e-25  Score=141.20  Aligned_cols=72  Identities=31%  Similarity=0.579  Sum_probs=66.8

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~   72 (72)
                      +|+.+..++++.+|||||+||+++|++++.+|+++||||||+|||+.+++.+.+++.++.+ .|.|||++||+
T Consensus       116 ~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~  188 (255)
T PRK11248        116 VGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHD  188 (255)
T ss_pred             cCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            4666778889999999999999999999999999999999999999999999999999854 58999999996

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=1.4e-25  Score=142.95  Aligned_cols=72  Identities=35%  Similarity=0.654  Sum_probs=66.9

Q ss_pred             CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+. ...++++.+||||||||++||++++.+|+++||||||+|||+.+++.+.+++.+++++|.|||++||+
T Consensus       131 ~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd  203 (288)
T PRK13643        131 VGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHL  203 (288)
T ss_pred             cCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence            3664 46789999999999999999999999999999999999999999999999999987779999999997

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.93  E-value=1.1e-25  Score=146.83  Aligned_cols=72  Identities=29%  Similarity=0.571  Sum_probs=68.1

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+++..++++.+||||||||+++|+|++.+|+++||||||+|||+.+++.+.+.++++.++ |.|+|++||+
T Consensus       119 ~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~  191 (354)
T TIGR02142       119 LGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHS  191 (354)
T ss_pred             cCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence            46778889999999999999999999999999999999999999999999999999998765 8999999996

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.93  E-value=7.6e-26  Score=145.36  Aligned_cols=67  Identities=28%  Similarity=0.515  Sum_probs=64.6

Q ss_pred             hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858            6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR   72 (72)
Q Consensus         6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~   72 (72)
                      ..+.||.+|||||+||+.||.|++.+|+++|.||||++||...+.++.++++++++ .|.++|+||||
T Consensus       146 ~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHD  213 (316)
T COG0444         146 RLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHD  213 (316)
T ss_pred             HHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            66899999999999999999999999999999999999999999999999999987 49999999998

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.93  E-value=1.5e-25  Score=141.59  Aligned_cols=72  Identities=31%  Similarity=0.662  Sum_probs=67.6

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+.+..++++.+|||||+||+++|+|++.+|+++|+||||+|||+.+++.+.+++.+++++|.|||++||+
T Consensus       130 ~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~  201 (272)
T PRK15056        130 VDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHN  201 (272)
T ss_pred             cCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            366677889999999999999999999999999999999999999999999999999987678999999996

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.93  E-value=1e-25  Score=147.10  Aligned_cols=72  Identities=32%  Similarity=0.583  Sum_probs=68.5

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +++++..++++.+||||||||+++||||+.+|+++|||||+++||+..++.+.+.++++.++ |.|+|++|||
T Consensus       122 l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd  194 (353)
T TIGR03265       122 VGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHD  194 (353)
T ss_pred             cCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence            47888899999999999999999999999999999999999999999999999999998765 9999999997

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.93  E-value=1.3e-25  Score=146.39  Aligned_cols=72  Identities=28%  Similarity=0.539  Sum_probs=68.0

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+++..++++.+||||||||++||||++.+|+++||||||++||+..++.+.+.++++.++ |.|+|++|||
T Consensus       116 ~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd  188 (352)
T PRK11144        116 LGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHS  188 (352)
T ss_pred             cCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence            46778889999999999999999999999999999999999999999999999999998765 8999999997

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=1.6e-25  Score=142.72  Aligned_cols=72  Identities=35%  Similarity=0.606  Sum_probs=66.8

Q ss_pred             CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+. ...++++.+|||||+||++||++++.+|+++||||||+|||+.++..+.++++++.++ |.|||++||+
T Consensus       132 ~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd  205 (290)
T PRK13634        132 VGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHS  205 (290)
T ss_pred             CCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            4675 5678999999999999999999999999999999999999999999999999998765 8999999997

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.93  E-value=8.8e-26  Score=139.44  Aligned_cols=67  Identities=31%  Similarity=0.583  Sum_probs=63.0

Q ss_pred             chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +..|+.+..||||||||++||||++.+|++++|||||++|||.+...+-+++.+++ +.-||++|||+
T Consensus       141 DrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHn  207 (253)
T COG1117         141 DRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHN  207 (253)
T ss_pred             HHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCC
Confidence            46678889999999999999999999999999999999999999999999999987 47899999996

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.93  E-value=1.1e-25  Score=138.41  Aligned_cols=72  Identities=35%  Similarity=0.647  Sum_probs=67.9

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+++..++++.+||+||+||+++|+|++.+|++++|||||+|||+.+++.+.+++.++.++|.|||++||+
T Consensus       112 ~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~  183 (223)
T TIGR03740       112 VDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHI  183 (223)
T ss_pred             cCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence            467778889999999999999999999999999999999999999999999999999987678999999996

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.93  E-value=6.2e-26  Score=146.35  Aligned_cols=72  Identities=31%  Similarity=0.562  Sum_probs=69.2

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +||+.+.+++|.+|||||||||.+||||+.+|++++|||||+.|||--+.++.+.+.++.++ ++||+|+|||
T Consensus       152 VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHD  224 (386)
T COG4175         152 VGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHD  224 (386)
T ss_pred             cCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecC
Confidence            48899999999999999999999999999999999999999999999999999999999765 8999999997

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=1.6e-25  Score=144.92  Aligned_cols=72  Identities=33%  Similarity=0.544  Sum_probs=66.8

Q ss_pred             CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+. ...++++.+|||||+||++||+|++.+|+++|+||||++||+..+..++++|.++.++ |.|+|++|||
T Consensus       141 ~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHd  214 (327)
T PRK11308        141 VGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHD  214 (327)
T ss_pred             CCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence            3564 4678999999999999999999999999999999999999999999999999998765 9999999997

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.93  E-value=1.6e-25  Score=137.10  Aligned_cols=72  Identities=28%  Similarity=0.636  Sum_probs=67.3

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+++..++.+.+||+||+||+++|++++.+|+++||||||+|||+.+++.+.+++.++.++ |.|||++||+
T Consensus       116 ~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~  188 (213)
T TIGR01277       116 VGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHH  188 (213)
T ss_pred             cCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            46777788999999999999999999999999999999999999999999999999998764 8999999996

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=1.5e-25  Score=145.08  Aligned_cols=72  Identities=25%  Similarity=0.515  Sum_probs=66.1

Q ss_pred             CCCcc---hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTE---YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~---~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +||.+   ..++++.+|||||+||++||+||+.+|+++|+||||++||+.++..+.++++++.++ |.|+|++|||
T Consensus       143 ~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHd  218 (330)
T PRK15093        143 VGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHD  218 (330)
T ss_pred             CCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence            35543   457899999999999999999999999999999999999999999999999998775 9999999997

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=1.5e-25  Score=148.35  Aligned_cols=72  Identities=32%  Similarity=0.558  Sum_probs=67.9

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~   72 (72)
                      +|+++..++++.+||||||||++||||++.+|+++||||||+|||+.+++.+.+.+.++.+ .|+|||++||+
T Consensus       152 ~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd  224 (400)
T PRK10070        152 VGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHD  224 (400)
T ss_pred             cCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence            4777888999999999999999999999999999999999999999999999999999865 48999999996

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=1.5e-25  Score=138.60  Aligned_cols=72  Identities=31%  Similarity=0.638  Sum_probs=67.4

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+++..++++.+|||||+||+++|+|++.+|+++||||||+|||+.+++.+.+++.++.++ |.|+|++||+
T Consensus       117 ~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~  189 (232)
T PRK10771        117 MGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHS  189 (232)
T ss_pred             cCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence            46777889999999999999999999999999999999999999999999999999998654 8999999996

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.93  E-value=2e-25  Score=137.52  Aligned_cols=71  Identities=32%  Similarity=0.562  Sum_probs=64.7

Q ss_pred             CCCcchhcCc--CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRE--SGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~--~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+.+..++.  +.+|||||+||+++|++++.+|+++||||||+|||+.+++.+.+.|+++.++ .|||++||+
T Consensus       127 ~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~  199 (227)
T cd03260         127 AALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHN  199 (227)
T ss_pred             cCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEecc
Confidence            3566666666  5999999999999999999999999999999999999999999999998776 999999996

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.93  E-value=1.4e-25  Score=140.57  Aligned_cols=72  Identities=22%  Similarity=0.362  Sum_probs=67.1

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +++.+..++++.+|||||+||++||+|++.+|+++||||||++||+.++..+.++|+++.++ |.|||++||+
T Consensus       103 l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd  175 (246)
T cd03237         103 LQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHD  175 (246)
T ss_pred             cCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            35667788999999999999999999999999999999999999999999999999998764 8999999996

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.93  E-value=1.3e-25  Score=150.67  Aligned_cols=72  Identities=35%  Similarity=0.562  Sum_probs=68.2

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+++..++++.+||||||||++||+|++.+|+++||||||+|||+.+++.+.+++.+++++|.|||++||+
T Consensus       123 ~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~  194 (490)
T PRK10938        123 FGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNR  194 (490)
T ss_pred             cCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence            467777899999999999999999999999999999999999999999999999999987778999999996

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.93  E-value=1.4e-25  Score=147.48  Aligned_cols=72  Identities=28%  Similarity=0.537  Sum_probs=68.4

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +++++..++++.+||||||||+++||||+.+|+++||||||++||+..++.+.+.|+++.++ |.|+|++|||
T Consensus       132 ~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd  204 (375)
T PRK09452        132 VQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHD  204 (375)
T ss_pred             cCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            47788899999999999999999999999999999999999999999999999999998765 9999999997

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.93  E-value=1.3e-25  Score=137.67  Aligned_cols=70  Identities=31%  Similarity=0.620  Sum_probs=65.5

Q ss_pred             CcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         3 l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +.+..++++.+|||||+||+++|+|++.+|+++||||||+|||+.+++.+++.++++.+.|.|+|++||+
T Consensus       122 l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~  191 (222)
T cd03224         122 LKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQN  191 (222)
T ss_pred             hhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4556788899999999999999999999999999999999999999999999999987678999999996

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.93  E-value=1.6e-25  Score=150.91  Aligned_cols=72  Identities=29%  Similarity=0.443  Sum_probs=68.0

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+.+..++++.+||||||||++||++++.+|+++||||||+|||+.+++.+.++|++++++|.|||++||+
T Consensus       133 ~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd  204 (510)
T PRK09700        133 VGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHK  204 (510)
T ss_pred             cCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            467777899999999999999999999999999999999999999999999999999987779999999997

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.93  E-value=2.3e-25  Score=139.56  Aligned_cols=72  Identities=29%  Similarity=0.564  Sum_probs=66.2

Q ss_pred             CCCcch-hcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEY-RHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~-~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+.+. .++++.+|||||+||+++|+|++++|+++||||||+|||+.+++.+.++++++++.|.|||++||+
T Consensus       139 ~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~  211 (257)
T PRK10619        139 VGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE  211 (257)
T ss_pred             cCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            356554 378899999999999999999999999999999999999999999999999987679999999996

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.93  E-value=2.4e-25  Score=135.34  Aligned_cols=71  Identities=25%  Similarity=0.394  Sum_probs=66.1

Q ss_pred             CCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         2 ~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ++.+..++++.+||+||+||+++|++++.+|+++||||||+|||+.+++.+.+.+++++++|.|+|++||+
T Consensus       116 ~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~  186 (200)
T PRK13540        116 SLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQ  186 (200)
T ss_pred             CCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence            55566788889999999999999999999999999999999999999999999999987678999999996

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=2.2e-25  Score=141.12  Aligned_cols=72  Identities=32%  Similarity=0.619  Sum_probs=66.4

Q ss_pred             CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+. ...++++.+||||||||+++|+|++.+|+++||||||+|||+.+++.+.+.|.+++++|.|||++||+
T Consensus       132 ~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~  204 (280)
T PRK13649        132 VGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHL  204 (280)
T ss_pred             cCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecc
Confidence            3565 35688999999999999999999999999999999999999999999999999987678999999996

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.93  E-value=2.6e-25  Score=136.77  Aligned_cols=72  Identities=25%  Similarity=0.545  Sum_probs=65.9

Q ss_pred             CCCcc-hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTE-YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~-~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+.+ ..++++.+||+||+||+++|+|++.+|+++||||||+|||+.+++.+.+.+++++++|.|||++||+
T Consensus       136 ~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~  208 (224)
T TIGR02324       136 LNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHD  208 (224)
T ss_pred             cCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            35654 3578899999999999999999999999999999999999999999999999987678999999996

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=2.3e-25  Score=143.91  Aligned_cols=72  Identities=31%  Similarity=0.592  Sum_probs=67.0

Q ss_pred             CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+. ...++.+.+|||||+||++||||++.+|+++||||||+|||+.+++.+.+++.++.++|.|||++||+
T Consensus       163 ~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd  235 (320)
T PRK13631        163 MGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHT  235 (320)
T ss_pred             cCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence            3664 56889999999999999999999999999999999999999999999999999987679999999996

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.93  E-value=1.4e-25  Score=136.52  Aligned_cols=72  Identities=28%  Similarity=0.554  Sum_probs=69.3

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+.+..+.||..|||||+||++|||||+.+|+++++||||+.|||.-.-++.+.+++++++|+|.+++||.
T Consensus       140 VGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHE  211 (256)
T COG4598         140 VGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHE  211 (256)
T ss_pred             hCchhhhhcCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeee
Confidence            478889999999999999999999999999999999999999999999999999999999999999999994

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=1.8e-25  Score=144.59  Aligned_cols=67  Identities=27%  Similarity=0.431  Sum_probs=63.8

Q ss_pred             hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858            6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR   72 (72)
Q Consensus         6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~   72 (72)
                      ..++++.+|||||+||++||+|++.+|+++|+||||++||+..+..+.++|+++++ .|.|+|++|||
T Consensus       146 ~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHd  213 (326)
T PRK11022        146 RLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHD  213 (326)
T ss_pred             HHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            56889999999999999999999999999999999999999999999999999976 49999999997

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=2.1e-25  Score=141.53  Aligned_cols=72  Identities=31%  Similarity=0.584  Sum_probs=68.2

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+++..++++.+|||||+||+++|++++.+|+++||||||+|||+.+++.+++++.++.++ |.||+++||+
T Consensus       128 ~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~  200 (279)
T PRK13635        128 VGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHD  200 (279)
T ss_pred             cCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecC
Confidence            47778889999999999999999999999999999999999999999999999999998765 8999999996

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=2.3e-25  Score=141.01  Aligned_cols=72  Identities=31%  Similarity=0.665  Sum_probs=68.1

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+.++.++++.+|||||+||+++|++++.+|+++||||||+|||+.++..+.+.+.++.++|.||+++||+
T Consensus       125 ~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~  196 (275)
T PRK13639        125 VGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHD  196 (275)
T ss_pred             CCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence            467778899999999999999999999999999999999999999999999999999987679999999996

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.93  E-value=6.8e-26  Score=147.16  Aligned_cols=72  Identities=26%  Similarity=0.525  Sum_probs=69.0

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +++++..+++|.+|||||||||++|||++++|++++||||+++||...+..+...|+++.++ |.|+|++|||
T Consensus       121 L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHD  193 (338)
T COG3839         121 LGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHD  193 (338)
T ss_pred             cCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCC
Confidence            47889999999999999999999999999999999999999999999999999999998765 9999999997

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=2.2e-25  Score=141.61  Aligned_cols=72  Identities=29%  Similarity=0.599  Sum_probs=67.9

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+.+..++++.+|||||+||++||+|++.+|+++||||||+|||+.+++.+.+++.++.++ |.||+++||+
T Consensus       129 ~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~  201 (283)
T PRK13636        129 TGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHD  201 (283)
T ss_pred             CCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence            46777889999999999999999999999999999999999999999999999999998765 8999999996

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=2.1e-25  Score=141.46  Aligned_cols=72  Identities=32%  Similarity=0.581  Sum_probs=67.9

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+++..++++.+|||||+||++||++++.+|+++||||||+|||+.++..+.+++.++.++ |.|||++||+
T Consensus       132 ~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~  204 (280)
T PRK13633        132 VGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHY  204 (280)
T ss_pred             CCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence            47778889999999999999999999999999999999999999999999999999998764 9999999996

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.93  E-value=2.8e-25  Score=137.69  Aligned_cols=71  Identities=24%  Similarity=0.433  Sum_probs=64.5

Q ss_pred             CCc-chhcCcCC-CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            2 GLT-EYRHRESG-RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         2 ~l~-~~~~~~~~-~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      |+. ...++++. +||||||||+++|++++.+|+++||||||++||+.+++.+.++++++.++|.|||++||+
T Consensus       131 ~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~  203 (243)
T TIGR01978       131 GMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHY  203 (243)
T ss_pred             CCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEec
Confidence            554 35677776 599999999999999999999999999999999999999999999987778999999996

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=2.2e-25  Score=140.33  Aligned_cols=72  Identities=28%  Similarity=0.479  Sum_probs=67.1

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +++++..++++.+|||||+||+++|+|++.+|+++||||||+|||+.+++.+.+.+.++.++ |.|||++||+
T Consensus       135 ~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~  207 (265)
T PRK10575        135 VGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHD  207 (265)
T ss_pred             cCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            36667788999999999999999999999999999999999999999999999999998765 8999999996

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.93  E-value=1.9e-25  Score=150.51  Aligned_cols=72  Identities=26%  Similarity=0.484  Sum_probs=67.5

Q ss_pred             CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+. +..++++.+||||||||+++|++++.+|+++||||||+|||+.+++.+.++|++++++|.|||++|||
T Consensus       396 ~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd  468 (510)
T PRK09700        396 LALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSE  468 (510)
T ss_pred             cCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence            4665 67889999999999999999999999999999999999999999999999999987779999999997

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=2.5e-25  Score=141.56  Aligned_cols=72  Identities=32%  Similarity=0.616  Sum_probs=66.9

Q ss_pred             CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858            1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~   72 (72)
                      +|+. +..++++.+|||||+||++||++++.+|+++||||||+|||+.++..+.++++++.+ .|.|||++||+
T Consensus       132 ~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~  205 (286)
T PRK13646        132 LGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHD  205 (286)
T ss_pred             cCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence            4675 577889999999999999999999999999999999999999999999999999875 48999999996

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.93  E-value=2e-25  Score=138.74  Aligned_cols=72  Identities=36%  Similarity=0.723  Sum_probs=66.5

Q ss_pred             CCCcc--hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTE--YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~--~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +++.+  ..++++.+|||||+||+++|++++.+|+++||||||+|||+.+++.+.+.+.+++++ |.|||++||+
T Consensus       121 l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~  195 (242)
T cd03295         121 VGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHD  195 (242)
T ss_pred             cCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence            35654  678899999999999999999999999999999999999999999999999998764 8999999996

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=2.1e-25  Score=138.53  Aligned_cols=72  Identities=31%  Similarity=0.620  Sum_probs=66.9

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+.+..++++.+|||||+||+++|++++.+|+++||||||+|||+.+++.+.+.+.++++.|.|+|++||+
T Consensus       125 ~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~  196 (241)
T PRK10895        125 FHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHN  196 (241)
T ss_pred             cCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcC
Confidence            356667788999999999999999999999999999999999999999999999999987678999999996

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.93  E-value=2.6e-25  Score=136.37  Aligned_cols=72  Identities=26%  Similarity=0.413  Sum_probs=67.3

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +++.+..++++.+||+||+||+++|++++.+|+++++||||++||+.+++.+.+++.++.++|.|+|++||+
T Consensus       125 ~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~  196 (214)
T PRK13543        125 VGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHG  196 (214)
T ss_pred             cCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence            356667789999999999999999999999999999999999999999999999999887778999999996

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.93  E-value=2.3e-25  Score=137.73  Aligned_cols=68  Identities=29%  Similarity=0.560  Sum_probs=64.0

Q ss_pred             chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +..++.+.+||||||||+++|++++.+|+++||||||+|||+.+++.+.+.+.++.++ |.|||++||+
T Consensus       117 ~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~  185 (230)
T TIGR02770       117 EVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHD  185 (230)
T ss_pred             HHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            4578899999999999999999999999999999999999999999999999998764 8999999996

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.93  E-value=2.5e-25  Score=138.07  Aligned_cols=71  Identities=31%  Similarity=0.520  Sum_probs=66.5

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+++..++++.+|||||+||+++|+|++.+|++++|||||+|||+.+++.+++.++++.+ +.|||++||+
T Consensus       131 ~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~  201 (242)
T TIGR03411       131 IGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHD  201 (242)
T ss_pred             cCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECC
Confidence            4677778899999999999999999999999999999999999999999999999999865 7899999996

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.93  E-value=2.5e-25  Score=138.22  Aligned_cols=72  Identities=31%  Similarity=0.552  Sum_probs=67.1

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+.+..++++.+||+||+||+++|++++.+|+++||||||+|||+.+++.+.+++.+++++ +.|||++||+
T Consensus       141 ~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~  213 (236)
T cd03267         141 LDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHY  213 (236)
T ss_pred             cCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence            36777788899999999999999999999999999999999999999999999999998764 8999999996

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.93  E-value=2.3e-25  Score=139.86  Aligned_cols=72  Identities=28%  Similarity=0.576  Sum_probs=67.2

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+.+..++.+.+||+||+||+++|+|++.+|+++||||||+|||+.+++.+.+.|+++.++ |.|||++||+
T Consensus       140 ~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~  212 (262)
T PRK09984        140 VGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQ  212 (262)
T ss_pred             cCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            36667788999999999999999999999999999999999999999999999999998754 8999999996

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.93  E-value=2.4e-25  Score=150.34  Aligned_cols=72  Identities=33%  Similarity=0.469  Sum_probs=67.5

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~   72 (72)
                      +|+++..++++.+||||||||++||+|++.+|+++||||||++||+.+++.+.++++++.+ .|.|||++|||
T Consensus       156 ~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd  228 (520)
T TIGR03269       156 VQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHW  228 (520)
T ss_pred             cCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Confidence            4677778899999999999999999999999999999999999999999999999999865 48999999997

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.93  E-value=2e-25  Score=142.86  Aligned_cols=71  Identities=37%  Similarity=0.659  Sum_probs=67.2

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+++..++++..||+|||||+++|+|++.+|+++||||||+|||+.+++.+++.++++++ +.|||++||+
T Consensus       121 ~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~  191 (301)
T TIGR03522       121 VGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHI  191 (301)
T ss_pred             CCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCC
Confidence            4788888999999999999999999999999999999999999999999999999999864 7999999996

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=2.4e-25  Score=150.02  Aligned_cols=72  Identities=28%  Similarity=0.509  Sum_probs=67.2

Q ss_pred             CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +++. +..++++.+||||||||++||++++.+|+++||||||+|||+.+++.+.+++.+++++|.|||++|||
T Consensus       392 ~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd  464 (506)
T PRK13549        392 LKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSE  464 (506)
T ss_pred             cCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCC
Confidence            3564 46789999999999999999999999999999999999999999999999999988779999999997

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.93  E-value=2.7e-25  Score=149.64  Aligned_cols=72  Identities=28%  Similarity=0.470  Sum_probs=67.4

Q ss_pred             CCC-cchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGL-TEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l-~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +++ .+..++++.+||||||||+++|++++.+|+++||||||+|||+.+++.+.+++.+++++|.|||++|||
T Consensus       383 ~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd  455 (501)
T PRK11288        383 LNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSD  455 (501)
T ss_pred             cCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCC
Confidence            456 357899999999999999999999999999999999999999999999999999998789999999997

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.92  E-value=2.9e-25  Score=139.29  Aligned_cols=72  Identities=28%  Similarity=0.497  Sum_probs=67.3

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+.+..++++.+||+||+||+++|++++.+|+++||||||+|||+.+++.+.+.+.++.++ |.|||++||+
T Consensus       108 ~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~  180 (251)
T PRK09544        108 VQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHD  180 (251)
T ss_pred             cCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence            36677788999999999999999999999999999999999999999999999999998765 8999999996

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.92  E-value=3.1e-25  Score=149.76  Aligned_cols=72  Identities=24%  Similarity=0.458  Sum_probs=68.1

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+.+..++++.+||||||||++||++++.+|+++||||||+|||+.+++.+.++|++++++|.|||++||+
T Consensus       128 ~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd  199 (510)
T PRK15439        128 LGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHK  199 (510)
T ss_pred             cCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            467777899999999999999999999999999999999999999999999999999987779999999996

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.92  E-value=2.7e-25  Score=149.60  Aligned_cols=72  Identities=25%  Similarity=0.428  Sum_probs=67.8

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+.+..++++.+||||||||++||+|++.+|+++||||||+|||+.+++.+.++++++.++|.|||++|||
T Consensus       129 ~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd  200 (501)
T PRK10762        129 LNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHR  200 (501)
T ss_pred             cCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            467777889999999999999999999999999999999999999999999999999987778999999997

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=3.9e-25  Score=140.09  Aligned_cols=72  Identities=33%  Similarity=0.669  Sum_probs=67.7

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+.+..++.+.+|||||+||+++|+|++.+|+++||||||+|||+.+++.+.++++++.++ |.|||++||+
T Consensus       125 ~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~  197 (277)
T PRK13652        125 LGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQ  197 (277)
T ss_pred             CCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence            46777889999999999999999999999999999999999999999999999999998765 8999999996

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=2.9e-25  Score=149.60  Aligned_cols=72  Identities=22%  Similarity=0.340  Sum_probs=67.9

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+.+..++++.+||||||||++||+|++.+|+++||||||++||+.++..+.+++.+++++|.|||++||+
T Consensus       131 ~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~  202 (506)
T PRK13549        131 LKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHK  202 (506)
T ss_pred             cCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCc
Confidence            467677889999999999999999999999999999999999999999999999999987779999999997

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=3.2e-25  Score=141.04  Aligned_cols=72  Identities=29%  Similarity=0.529  Sum_probs=66.1

Q ss_pred             CCC-cchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGL-TEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l-~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +++ .+..++++.+|||||+||+++|+|++.+|+++||||||+|||+.+++.+.+++.++.++ |.|||++||+
T Consensus       137 ~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~  210 (289)
T PRK13645        137 VQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHN  210 (289)
T ss_pred             cCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence            356 35678899999999999999999999999999999999999999999999999998764 8999999996

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.92  E-value=3.4e-25  Score=139.50  Aligned_cols=72  Identities=26%  Similarity=0.464  Sum_probs=67.4

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+++..++++.+|||||+||+++|+|++.+|+++||||||+|||+.+++.+.+.|.++.++ |.|||++||+
T Consensus       131 ~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~  203 (265)
T PRK10253        131 TGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHD  203 (265)
T ss_pred             cCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            46777789999999999999999999999999999999999999999999999999998764 8999999996

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.92  E-value=3.6e-25  Score=139.37  Aligned_cols=72  Identities=28%  Similarity=0.490  Sum_probs=66.5

Q ss_pred             CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+. ...++++.+|||||+||+++|+|++++|+++||||||++||+.+++.+.+.++++.++ |.|||++||+
T Consensus       137 ~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~  210 (265)
T TIGR02769       137 VGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHD  210 (265)
T ss_pred             cCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Confidence            3564 5678899999999999999999999999999999999999999999999999998765 8999999996

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=4.5e-25  Score=137.31  Aligned_cols=72  Identities=31%  Similarity=0.614  Sum_probs=66.3

Q ss_pred             CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      ++++ +..++++.+|||||+||+++|+|++.+|+++||||||+|||+.+++.+.+.+++++++ |.|||++||+
T Consensus       118 ~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~  191 (241)
T PRK14250        118 VGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHN  191 (241)
T ss_pred             cCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence            3564 4678899999999999999999999999999999999999999999999999998764 8999999996

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.92  E-value=4.3e-25  Score=138.39  Aligned_cols=72  Identities=31%  Similarity=0.560  Sum_probs=66.0

Q ss_pred             CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +++. ...++.+.+|||||+||+++|||++.+|+++||||||+|||+.+++.+.+.++++.++ |.|||++||+
T Consensus       138 ~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~  211 (258)
T PRK11701        138 VEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHD  211 (258)
T ss_pred             cCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Confidence            3554 3678899999999999999999999999999999999999999999999999998765 8999999996

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.92  E-value=4.3e-25  Score=138.28  Aligned_cols=72  Identities=29%  Similarity=0.509  Sum_probs=67.5

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +++.+..++++.+||+||+||+++|+|++.+|+++||||||+|||+.+++.+.++++++.++|.|||++||+
T Consensus       125 ~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~  196 (256)
T TIGR03873       125 TELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHD  196 (256)
T ss_pred             cCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            356677889999999999999999999999999999999999999999999999999987678999999996

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=3.5e-25  Score=145.69  Aligned_cols=72  Identities=28%  Similarity=0.528  Sum_probs=67.6

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +++.+..++++.+||||||||++||||++.+|+++||||||++||+..++.+.+.++++.++ |.|+|++|||
T Consensus       137 l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd  209 (377)
T PRK11607        137 VHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHD  209 (377)
T ss_pred             cCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence            46778889999999999999999999999999999999999999999999999999988654 8999999997

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.92  E-value=3.7e-25  Score=145.83  Aligned_cols=72  Identities=31%  Similarity=0.601  Sum_probs=68.3

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+.+..++++.+|||||+||++|||||+.+|+++||||||++||+..+..+.+.+.++.++ ++|||++|||
T Consensus       152 vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHd  224 (382)
T TIGR03415       152 VGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHD  224 (382)
T ss_pred             cCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            47788889999999999999999999999999999999999999999999999999998765 8999999997

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.92  E-value=2.9e-25  Score=149.85  Aligned_cols=72  Identities=26%  Similarity=0.505  Sum_probs=67.6

Q ss_pred             CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+. +..++++.+||||||||++||++++.+|+++||||||+|||+.+++.+.+.+++++++|.|||++|||
T Consensus       390 ~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd  462 (510)
T PRK15439        390 LNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSD  462 (510)
T ss_pred             cCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCC
Confidence            4665 57889999999999999999999999999999999999999999999999999987779999999997

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.92  E-value=4.4e-25  Score=137.82  Aligned_cols=72  Identities=29%  Similarity=0.554  Sum_probs=66.0

Q ss_pred             CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +++. ...++.+.+|||||+||+++|+|++.+|+++||||||+|||+.+++.+.+++.++.++ |.|+|++||+
T Consensus       135 l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~  208 (253)
T TIGR02323       135 VEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHD  208 (253)
T ss_pred             cCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            3564 4678899999999999999999999999999999999999999999999999998654 8999999996

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.92  E-value=4.1e-25  Score=138.01  Aligned_cols=72  Identities=25%  Similarity=0.465  Sum_probs=67.3

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+++..++.+.+|||||+||+++|++++.+|+++||||||+|||+.++..+.+.++++.++ |.|+|++||+
T Consensus       134 ~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~  206 (252)
T TIGR03005       134 VGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHE  206 (252)
T ss_pred             cCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Confidence            46677788899999999999999999999999999999999999999999999999998764 8999999996

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.92  E-value=4.7e-25  Score=133.58  Aligned_cols=72  Identities=19%  Similarity=0.259  Sum_probs=66.4

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +++++..++++.+||+||+||+++|+|++.+|+++|+||||+|||+.+++.+.+++++..+.|.|++++||+
T Consensus       111 ~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~  182 (195)
T PRK13541        111 FKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHL  182 (195)
T ss_pred             cCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            356677888999999999999999999999999999999999999999999999998766678999999996

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.92  E-value=5.5e-25  Score=137.11  Aligned_cols=67  Identities=33%  Similarity=0.591  Sum_probs=63.3

Q ss_pred             chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +..++++.+||||||||+++|+|++.+|+++||||||+|||+.+++.+.++++++.+ +.|||++||+
T Consensus       136 ~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~  202 (247)
T TIGR00972       136 DRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHN  202 (247)
T ss_pred             hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecC
Confidence            567889999999999999999999999999999999999999999999999999876 4899999996

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=2.6e-25  Score=137.78  Aligned_cols=70  Identities=33%  Similarity=0.642  Sum_probs=65.0

Q ss_pred             CcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         3 l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +.+..++++.+|||||+||+++|++++.+|+++||||||+|||+.+++.+.+.++++.++|.|||++||+
T Consensus       127 l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~  196 (237)
T PRK11614        127 LHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQN  196 (237)
T ss_pred             HHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCc
Confidence            4455678899999999999999999999999999999999999999999999999987779999999996

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=5.1e-25  Score=139.55  Aligned_cols=72  Identities=28%  Similarity=0.563  Sum_probs=67.6

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+.+..++++.+|||||+||++||++++.+|+++||||||+|||+.+++.+.+++.++.++ |.|||++||+
T Consensus       128 ~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~  200 (277)
T PRK13642        128 VNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHD  200 (277)
T ss_pred             CCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            36777888999999999999999999999999999999999999999999999999998765 9999999996

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.92  E-value=3.8e-25  Score=135.59  Aligned_cols=71  Identities=51%  Similarity=0.921  Sum_probs=66.0

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +++.+..++++.+||+||+||+++|++++.+|+++||||||+|||+.+++.+.+.++++.+ +.|+|++||+
T Consensus       121 ~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~  191 (220)
T cd03263         121 LGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHS  191 (220)
T ss_pred             cCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCC
Confidence            3666777889999999999999999999999999999999999999999999999999865 5999999996

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.92  E-value=6.9e-25  Score=136.42  Aligned_cols=67  Identities=22%  Similarity=0.361  Sum_probs=61.5

Q ss_pred             hhcCcCC-CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            6 YRHRESG-RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         6 ~~~~~~~-~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ..++.+. +|||||+||+++|+|++.+|+++||||||+|||+.+++.+.+.++++++.|.|||++||+
T Consensus       137 ~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~  204 (248)
T PRK09580        137 LLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHY  204 (248)
T ss_pred             hcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            4455564 799999999999999999999999999999999999999999999987778999999996

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.92  E-value=6.1e-25  Score=135.46  Aligned_cols=71  Identities=37%  Similarity=0.583  Sum_probs=66.1

Q ss_pred             CCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         2 ~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ++++..++.+.+||+||+||+++|++++.+|+++||||||+|||+.++..+.+.+.++.++|.|+|++||+
T Consensus       132 ~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~  202 (226)
T cd03234         132 ALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQ  202 (226)
T ss_pred             cchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence            45566788899999999999999999999999999999999999999999999999987678999999996

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.92  E-value=4.6e-25  Score=136.58  Aligned_cols=69  Identities=28%  Similarity=0.519  Sum_probs=63.6

Q ss_pred             CcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         3 l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ++...++++.+||||||||+++|++++.+|+++||||||+|||+.+++.+.+.++++. +|.|||++||+
T Consensus       128 ~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~  196 (237)
T cd03252         128 YDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHR  196 (237)
T ss_pred             ccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCC
Confidence            3445677899999999999999999999999999999999999999999999999986 48999999996

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=5.3e-25  Score=139.05  Aligned_cols=72  Identities=26%  Similarity=0.568  Sum_probs=67.2

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+.+..++++.+|||||+||++||+|++.+|+++||||||+|||+.+++.+.++++++.++ +.|||++||+
T Consensus       130 ~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~  202 (271)
T PRK13632        130 VGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHD  202 (271)
T ss_pred             cCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEec
Confidence            46777889999999999999999999999999999999999999999999999999998765 5999999996

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.92  E-value=6.1e-25  Score=137.99  Aligned_cols=72  Identities=28%  Similarity=0.528  Sum_probs=66.8

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHh------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALI------GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~------~~p~~lllDEP~~gld~~~~~~i~~~l~~~~-~~g~til~~~h~   72 (72)
                      +|+.+..++.+.+|||||+||++||+|++      .+|+++||||||+|||+.+++.+.++++++. +.|.|||++||+
T Consensus       122 ~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~  200 (258)
T PRK13548        122 VDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHD  200 (258)
T ss_pred             cCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence            36777789999999999999999999999      5999999999999999999999999999987 568999999996

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=5.9e-25  Score=139.61  Aligned_cols=72  Identities=26%  Similarity=0.564  Sum_probs=67.9

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+++..++++.+||+||+||+++|+|++.+|+++||||||+|||+.+++.+.+.+.++.++ |.|||++||+
T Consensus       131 ~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~  203 (282)
T PRK13640        131 VGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHD  203 (282)
T ss_pred             CCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence            46777889999999999999999999999999999999999999999999999999998764 8999999996

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.92  E-value=6e-25  Score=142.45  Aligned_cols=67  Identities=25%  Similarity=0.522  Sum_probs=63.4

Q ss_pred             hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      ..++++.+|||||+||++||+|++.+|+++|+||||++||+.++..+.+++++++++ |.|+|++|||
T Consensus       154 ~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHd  221 (330)
T PRK09473        154 RMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHD  221 (330)
T ss_pred             HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence            357799999999999999999999999999999999999999999999999999765 8999999997

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.92  E-value=5e-25  Score=147.96  Aligned_cols=72  Identities=21%  Similarity=0.351  Sum_probs=67.4

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +++....++++.+||||||||+++|+|++.+|+++||||||+|||+.+++.+.++++++++.|.|||++||+
T Consensus       122 ~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~  193 (491)
T PRK10982        122 LDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHK  193 (491)
T ss_pred             cCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence            356667788999999999999999999999999999999999999999999999999987779999999996

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.92  E-value=5.3e-25  Score=148.22  Aligned_cols=72  Identities=25%  Similarity=0.398  Sum_probs=67.3

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+.+..++++.+||||||||++||++++.+|+++||||||+|||+.+++.+.+++.++.++|.|||++||+
T Consensus       128 ~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd  199 (501)
T PRK11288        128 LGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHR  199 (501)
T ss_pred             cCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            356666788999999999999999999999999999999999999999999999999987779999999996

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=7.9e-25  Score=138.04  Aligned_cols=72  Identities=28%  Similarity=0.473  Sum_probs=67.1

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +++.+..++++.+||+||+||+++|+|++.+|+++||||||+|||+.+++.+.+.++++.++ |.|||++||+
T Consensus       130 ~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~  202 (269)
T PRK13648        130 VDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHD  202 (269)
T ss_pred             cCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence            36667788999999999999999999999999999999999999999999999999998764 8999999996

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.92  E-value=5.8e-25  Score=138.61  Aligned_cols=72  Identities=25%  Similarity=0.372  Sum_probs=65.8

Q ss_pred             CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+. ...++++.+||+||+||+++|++++.+|+++||||||+|||+.+++.+.+.|.++.++ |.|||++||+
T Consensus       136 ~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~  209 (267)
T PRK15112        136 VGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQH  209 (267)
T ss_pred             cCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCC
Confidence            3563 5667889999999999999999999999999999999999999999999999998764 8999999996

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.92  E-value=5.7e-25  Score=148.03  Aligned_cols=72  Identities=32%  Similarity=0.574  Sum_probs=67.3

Q ss_pred             CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+. +..++++.+||||||||+++|++++.+|+++||||||+|||+.+++.+.++++++.++|.|||++|||
T Consensus       382 ~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd  454 (501)
T PRK10762        382 FNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSE  454 (501)
T ss_pred             cCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence            3563 56889999999999999999999999999999999999999999999999999997779999999997

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.92  E-value=9.8e-25  Score=136.10  Aligned_cols=71  Identities=25%  Similarity=0.415  Sum_probs=64.2

Q ss_pred             CCc-chhcCcCC-CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            2 GLT-EYRHRESG-RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         2 ~l~-~~~~~~~~-~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      |+. ...++.+. .|||||+||+++|+|++.+|+++||||||+|||+.+++.+.++++++.++|.|||++||+
T Consensus       138 ~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~  210 (252)
T CHL00131        138 GMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHY  210 (252)
T ss_pred             CCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence            454 35667776 599999999999999999999999999999999999999999999987678999999996

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.92  E-value=1.4e-24  Score=130.80  Aligned_cols=71  Identities=25%  Similarity=0.460  Sum_probs=65.8

Q ss_pred             CCcc-hhcCcCCCCChHHHHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            2 GLTE-YRHRESGRYSGGNKRKLSTAMALIGD--PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         2 ~l~~-~~~~~~~~lS~G~~qr~~ia~~l~~~--p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ++.. ..++++.+||+||+||+++|++++.+  |+++|+||||++||+..++.+.+.++++.+.|.|||++||+
T Consensus        75 ~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~  148 (176)
T cd03238          75 GLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHN  148 (176)
T ss_pred             CCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            5544 47889999999999999999999999  99999999999999999999999999987679999999996

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.92  E-value=4.2e-25  Score=134.11  Aligned_cols=72  Identities=31%  Similarity=0.639  Sum_probs=68.6

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+..+.++.|.+||||||||+++||+++++-++++|||||+.|||.-+.++..++.+++.+ +.|++|+||.
T Consensus       117 vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~  189 (231)
T COG3840         117 VGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHH  189 (231)
T ss_pred             hChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCC
Confidence            47888999999999999999999999999999999999999999999999999999999865 9999999994

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.92  E-value=6.7e-25  Score=147.51  Aligned_cols=72  Identities=31%  Similarity=0.546  Sum_probs=66.7

Q ss_pred             CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +++. ...++++.+||||||||++||++++.+|+++||||||+|||+.+++.+.+++.+++++|.|||++|||
T Consensus       390 ~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd  462 (500)
T TIGR02633       390 LKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSE  462 (500)
T ss_pred             cCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCC
Confidence            3564 35788999999999999999999999999999999999999999999999999988779999999997

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.92  E-value=1e-24  Score=136.50  Aligned_cols=67  Identities=25%  Similarity=0.464  Sum_probs=63.2

Q ss_pred             hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      ..++++.+|||||+||++||+|++.+|+++||||||+|||+.+++.+.+.++++.++ |.|||++||+
T Consensus       133 ~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~  200 (254)
T PRK10418        133 VLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHD  200 (254)
T ss_pred             hhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecC
Confidence            468899999999999999999999999999999999999999999999999998664 8999999996

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.92  E-value=7.3e-25  Score=148.28  Aligned_cols=72  Identities=38%  Similarity=0.652  Sum_probs=66.9

Q ss_pred             CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+. ...++++.+||||||||++||++++.+|+++||||||+|||+.+++.+.+++++++++ |.|||++|||
T Consensus       412 ~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd  485 (529)
T PRK15134        412 VGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHD  485 (529)
T ss_pred             cCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCC
Confidence            4665 4678999999999999999999999999999999999999999999999999998765 8999999997

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.92  E-value=6.8e-25  Score=148.43  Aligned_cols=67  Identities=25%  Similarity=0.486  Sum_probs=63.7

Q ss_pred             hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      ..++++.+||||||||++||+|++.+|+++||||||++||+.+++.+.+++++++++ |.|||++|||
T Consensus       149 ~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd  216 (529)
T PRK15134        149 RLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHN  216 (529)
T ss_pred             HHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCc
Confidence            458899999999999999999999999999999999999999999999999998765 8999999997

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.92  E-value=2.6e-25  Score=138.57  Aligned_cols=72  Identities=25%  Similarity=0.589  Sum_probs=67.9

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+.+++.++..+|||||+|||+|||||+++|++++.|||+++|||.+.+.+++.++++.++ |.|+|+..|+
T Consensus       135 vgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~  207 (258)
T COG3638         135 VGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQ  207 (258)
T ss_pred             cCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEech
Confidence            46778888999999999999999999999999999999999999999999999999999764 9999999995

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.92  E-value=5.8e-25  Score=148.97  Aligned_cols=71  Identities=30%  Similarity=0.562  Sum_probs=64.9

Q ss_pred             CCcchh--cCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            2 GLTEYR--HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         2 ~l~~~~--~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      |+.+..  +++|.+||||||||+.||+|++++|+++|+||||++||+..+.++.++|+++.++ |.++|+||||
T Consensus       141 gl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHD  214 (539)
T COG1123         141 GLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHD  214 (539)
T ss_pred             CCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCC
Confidence            454433  4599999999999999999999999999999999999999999999999999754 9999999997

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.92  E-value=6.8e-25  Score=147.32  Aligned_cols=71  Identities=25%  Similarity=0.525  Sum_probs=66.1

Q ss_pred             CCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            2 GLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         2 ~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ++. +..++++.+||||||||+++|++++.+|+++||||||+|||+.+++.+++.+.++.++|.|||++|||
T Consensus       379 ~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd  450 (491)
T PRK10982        379 RVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSE  450 (491)
T ss_pred             CccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCC
Confidence            453 45688999999999999999999999999999999999999999999999999988779999999997

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.92  E-value=1.1e-24  Score=134.81  Aligned_cols=72  Identities=31%  Similarity=0.583  Sum_probs=67.7

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+++..++.+.+||+||+||+++|++++.+|+++||||||+|||+.+++.+.+.+.++.++ |.|||++||+
T Consensus       118 ~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~  190 (232)
T cd03300         118 VQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHD  190 (232)
T ss_pred             cCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence            46777889999999999999999999999999999999999999999999999999998764 8999999996

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.92  E-value=9.2e-25  Score=134.23  Aligned_cols=72  Identities=29%  Similarity=0.523  Sum_probs=67.4

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~   72 (72)
                      +|+.+..++++.+||+||+||+++|++++.+|+++||||||+|||+.++..+.+.++++.+ .+.|+|++||+
T Consensus       129 ~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~  201 (220)
T TIGR02982       129 VGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHD  201 (220)
T ss_pred             cCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence            4677788899999999999999999999999999999999999999999999999999876 48999999996

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.92  E-value=7.5e-25  Score=135.13  Aligned_cols=69  Identities=33%  Similarity=0.586  Sum_probs=64.7

Q ss_pred             cchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            4 TEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         4 ~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      .+..++++.+|||||+||+++|++++.+|+++||||||+|||+.+++.+.+++.+++++ |.|+|++||+
T Consensus       122 ~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~  191 (230)
T TIGR03410       122 KEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQY  191 (230)
T ss_pred             HHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCC
Confidence            45678899999999999999999999999999999999999999999999999998764 8999999996

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.92  E-value=8.6e-25  Score=150.49  Aligned_cols=72  Identities=29%  Similarity=0.489  Sum_probs=67.2

Q ss_pred             CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+. ...++++.+||||||||++||+||+.+|+++|+||||++||+..+..+.++|++++++ |.|||++|||
T Consensus       450 ~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHd  523 (623)
T PRK10261        450 VGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHD  523 (623)
T ss_pred             cCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            4664 5688999999999999999999999999999999999999999999999999998765 8999999997

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.92  E-value=9.2e-25  Score=146.84  Aligned_cols=71  Identities=28%  Similarity=0.461  Sum_probs=65.1

Q ss_pred             CCcchh-cCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            2 GLTEYR-HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         2 ~l~~~~-~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ++.+.. ++++.+||||||||++||+|++.+|+++||||||+|||+.+++.+.++|++++++|.|||++||+
T Consensus       129 ~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd  200 (500)
T TIGR02633       129 QLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHK  200 (500)
T ss_pred             CCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCc
Confidence            555443 56799999999999999999999999999999999999999999999999987779999999997

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.92  E-value=1.1e-24  Score=135.07  Aligned_cols=72  Identities=29%  Similarity=0.581  Sum_probs=67.3

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+.+..++++.+||+||+||+++|+|++.+|+++++||||+|||+.+++.+++.++++..+ |.|++++||+
T Consensus       117 ~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~  189 (235)
T cd03299         117 LGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHD  189 (235)
T ss_pred             cCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence            46777788999999999999999999999999999999999999999999999999998665 8999999996

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.92  E-value=1.9e-24  Score=133.86  Aligned_cols=72  Identities=26%  Similarity=0.469  Sum_probs=66.0

Q ss_pred             CCCcc-hhcCcCCCCChHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTE-YRHRESGRYSGGNKRKLSTAMALIGDP--PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~-~~~~~~~~lS~G~~qr~~ia~~l~~~p--~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +++.+ ..++++.+|||||+||+++|++++.+|  +++|+||||+|||+..++.+.+.+++++++|.|+|++||+
T Consensus       124 ~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~  198 (226)
T cd03270         124 VGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHD  198 (226)
T ss_pred             CCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeC
Confidence            35554 578899999999999999999999998  5999999999999999999999999987779999999996

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.92  E-value=1.4e-24  Score=135.70  Aligned_cols=72  Identities=28%  Similarity=0.481  Sum_probs=66.6

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhc-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIG-------DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~-------~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+.+..++++.+||+||+||+++|+|++.       +|+++||||||+|||+.+++.+.++++++.++|.|||++||+
T Consensus       114 ~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~  192 (248)
T PRK03695        114 LGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHD  192 (248)
T ss_pred             cCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence            366677889999999999999999999998       679999999999999999999999999987678999999996

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.92  E-value=1.4e-24  Score=133.63  Aligned_cols=70  Identities=29%  Similarity=0.490  Sum_probs=65.1

Q ss_pred             CCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         2 ~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      |++...++++.+|||||+||+++|++++.+|+++||||||+|||+.+++.+.++++++.+ +.|+|++||+
T Consensus       139 gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~  208 (226)
T cd03248         139 GYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHR  208 (226)
T ss_pred             cccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECC
Confidence            566677888999999999999999999999999999999999999999999999999764 6899999996

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK13409 putative ATPase RIL; Provisional

Probab=99.92  E-value=1.1e-24  Score=149.42  Aligned_cols=72  Identities=22%  Similarity=0.375  Sum_probs=67.8

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +++.+..++++.+||||||||++||++++.+|+++||||||+|||+.++..+.+.|++++++ |.|+|++|||
T Consensus       441 l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD  513 (590)
T PRK13409        441 LQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHD  513 (590)
T ss_pred             CCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            46777889999999999999999999999999999999999999999999999999998764 8999999997

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.92  E-value=9.3e-25  Score=133.88  Aligned_cols=62  Identities=37%  Similarity=0.643  Sum_probs=58.2

Q ss_pred             cCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           10 ESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        10 ~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      .+.+|||||+||+++|++++.+|+++||||||+|||+.+++.+.+.++++.+ +.|||++||+
T Consensus       137 ~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~  198 (220)
T cd03245         137 RGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG-DKTLIIITHR  198 (220)
T ss_pred             CCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCC
Confidence            4579999999999999999999999999999999999999999999999865 4899999996

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=1.7e-24  Score=135.82  Aligned_cols=67  Identities=31%  Similarity=0.556  Sum_probs=62.9

Q ss_pred             chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +..++++.+|||||+||+++|+|++.+|+++||||||+|||+.++..++++++++.+ +.|||++||+
T Consensus       146 ~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~  212 (258)
T PRK14268        146 DRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHN  212 (258)
T ss_pred             hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECC
Confidence            456788999999999999999999999999999999999999999999999999864 7999999996

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.92  E-value=1.8e-24  Score=133.50  Aligned_cols=72  Identities=22%  Similarity=0.383  Sum_probs=65.9

Q ss_pred             CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +++. ...++++.+||+||+||+++|++++.+|+++||||||+|||+.+++.+.+.+.++.++ |.|||++||+
T Consensus       124 ~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~  197 (225)
T PRK10247        124 FALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHD  197 (225)
T ss_pred             cCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence            3564 4678899999999999999999999999999999999999999999999999998664 8999999996

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.92  E-value=1.2e-24  Score=149.72  Aligned_cols=67  Identities=25%  Similarity=0.463  Sum_probs=64.0

Q ss_pred             hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      ..++++.+||||||||++||+||+.+|+++||||||++||+..++.+.++++++.++ |.|||++|||
T Consensus       161 ~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHd  228 (623)
T PRK10261        161 ILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHD  228 (623)
T ss_pred             HHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence            578999999999999999999999999999999999999999999999999999765 8999999997

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.92  E-value=7.9e-25  Score=134.29  Aligned_cols=72  Identities=31%  Similarity=0.625  Sum_probs=69.1

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      |++.+.++++..+||||||+|+.|||||+.+|++++|||||+|+||.+...|..+++.++..|..|+++.|+
T Consensus       127 f~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHN  198 (243)
T COG1137         127 FHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHN  198 (243)
T ss_pred             hchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEcccc
Confidence            567889999999999999999999999999999999999999999999999999999999889999999996

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.92  E-value=1.3e-24  Score=146.82  Aligned_cols=67  Identities=27%  Similarity=0.499  Sum_probs=63.8

Q ss_pred             hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      ..++++.+||||||||++||+|++.+|+++||||||+|||+.+++.+.+.+++++++ |.|||++|||
T Consensus       420 ~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd  487 (520)
T TIGR03269       420 ILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHD  487 (520)
T ss_pred             hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCC
Confidence            578999999999999999999999999999999999999999999999999998765 8999999997

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.91  E-value=1.8e-24  Score=133.29  Aligned_cols=69  Identities=26%  Similarity=0.484  Sum_probs=62.9

Q ss_pred             CcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         3 l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ++...++++.+||+|||||+++|++++.+|+++||||||+|||+.+++.+.+.+.++. ++.|||++||+
T Consensus       129 ~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~  197 (229)
T cd03254         129 YDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHR  197 (229)
T ss_pred             ccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecC
Confidence            3444566789999999999999999999999999999999999999999999999885 58999999996

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.91  E-value=9.4e-25  Score=140.15  Aligned_cols=71  Identities=28%  Similarity=0.492  Sum_probs=68.1

Q ss_pred             CCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         2 ~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      .+++..++||.+||||||||+++|||++..|++++||||+++||...+..+..+++++.++ |.|.+++|||
T Consensus       126 qL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD  197 (345)
T COG1118         126 QLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHD  197 (345)
T ss_pred             cccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCC
Confidence            5678899999999999999999999999999999999999999999999999999999876 9999999997

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.91  E-value=1.9e-24  Score=133.86  Aligned_cols=68  Identities=28%  Similarity=0.504  Sum_probs=62.9

Q ss_pred             cchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            4 TEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         4 ~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +...++++.+|||||+||+++|++++.+|+++||||||+|||+.+++.+++.++++. +|.|||++||+
T Consensus       130 ~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~  197 (238)
T cd03249         130 DTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHR  197 (238)
T ss_pred             ceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCC
Confidence            334567789999999999999999999999999999999999999999999999886 78999999996

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.91  E-value=1.8e-24  Score=133.60  Aligned_cols=70  Identities=30%  Similarity=0.527  Sum_probs=64.1

Q ss_pred             CCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         2 ~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +++...++++.+||+||+||+++|+|++.+|+++||||||+|||+.+++.+.+.++++. ++.|||++||+
T Consensus       127 ~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~  196 (234)
T cd03251         127 GYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM-KNRTTFVIAHR  196 (234)
T ss_pred             CcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecC
Confidence            34455677899999999999999999999999999999999999999999999999886 48999999996

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.91  E-value=2.2e-24  Score=134.66  Aligned_cols=66  Identities=27%  Similarity=0.566  Sum_probs=62.0

Q ss_pred             hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ..++++.+|||||+||+++|++++.+|+++||||||+|||+.++..+.++++++.+ +.|||++||+
T Consensus       142 ~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~  207 (253)
T PRK14242        142 RLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHN  207 (253)
T ss_pred             HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEec
Confidence            45778999999999999999999999999999999999999999999999999854 7899999996

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.91  E-value=2e-24  Score=133.54  Aligned_cols=68  Identities=29%  Similarity=0.574  Sum_probs=62.8

Q ss_pred             cchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            4 TEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         4 ~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +...++++.+||+||+||+++|++++.+|+++||||||+|||+.+++.+.+.+.++.+ |.|||++||+
T Consensus       128 ~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~  195 (236)
T cd03253         128 DTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHR  195 (236)
T ss_pred             cchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCC
Confidence            3445667889999999999999999999999999999999999999999999999876 8999999996

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=2.3e-24  Score=134.80  Aligned_cols=67  Identities=27%  Similarity=0.537  Sum_probs=62.8

Q ss_pred             chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +..++++.+||||||||+++||+++.+|+++||||||+|||+.+++.++++|.+++ ++.|||++||+
T Consensus       142 ~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~  208 (254)
T PRK14273        142 DKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHN  208 (254)
T ss_pred             HHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCC
Confidence            45688899999999999999999999999999999999999999999999999985 47899999996

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.91  E-value=1.5e-24  Score=145.51  Aligned_cols=72  Identities=26%  Similarity=0.481  Sum_probs=66.4

Q ss_pred             CCCcc-hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-ceEEEEecC
Q psy858            1 MGLTE-YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTG-QSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~-~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g-~til~~~h~   72 (72)
                      +|+.+ ..++++.+||||||||+++|+|++.+|+++||||||+|||+.+++.+.++|.++++++ .|||++|||
T Consensus       388 ~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd  461 (490)
T PRK10938        388 LGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHH  461 (490)
T ss_pred             cCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecc
Confidence            46665 7889999999999999999999999999999999999999999999999999997765 579999997

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.91  E-value=3.2e-24  Score=135.55  Aligned_cols=71  Identities=21%  Similarity=0.360  Sum_probs=66.8

Q ss_pred             CCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         2 ~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ++.+..++++.+||+||+||+++|+|++.+|+++||||||+|||+.+++.+.+.+.++.+.|.|+|++||+
T Consensus       132 ~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~  202 (264)
T PRK13546        132 ELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHN  202 (264)
T ss_pred             CCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence            56677888999999999999999999999999999999999999999999999999987679999999996

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=2.5e-24  Score=134.32  Aligned_cols=67  Identities=27%  Similarity=0.528  Sum_probs=62.6

Q ss_pred             chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +..++++.+|||||+||+++|++++.+|+++||||||+|||+.+++.+.+.++++. ++.|||++||+
T Consensus       138 ~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~  204 (250)
T PRK14245        138 DKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHN  204 (250)
T ss_pred             hhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCC
Confidence            34678899999999999999999999999999999999999999999999999985 47999999996

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=2.7e-24  Score=135.76  Aligned_cols=68  Identities=26%  Similarity=0.524  Sum_probs=63.2

Q ss_pred             cchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            4 TEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         4 ~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ++..++++.+||+|||||+++|+|++.+|+++||||||+|||+.+++.+.+++.++++ +.|||++||+
T Consensus       145 ~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~  212 (269)
T PRK14259        145 KDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHN  212 (269)
T ss_pred             hhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCC
Confidence            3457888999999999999999999999999999999999999999999999999854 7899999996

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.91  E-value=3.5e-24  Score=135.77  Aligned_cols=72  Identities=26%  Similarity=0.444  Sum_probs=66.6

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEe
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALI---------GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTS   70 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~---------~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~   70 (72)
                      +|+.+..++++.+|||||+||+++|++++         .+|+++||||||+|||+.+++.+.++++++.++ |.|||++|
T Consensus       133 ~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiis  212 (272)
T PRK13547        133 AGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIV  212 (272)
T ss_pred             cCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence            35666778899999999999999999999         599999999999999999999999999998765 89999999


Q ss_pred             cC
Q psy858           71 HR   72 (72)
Q Consensus        71 h~   72 (72)
                      |+
T Consensus       213 H~  214 (272)
T PRK13547        213 HD  214 (272)
T ss_pred             CC
Confidence            96

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=3.2e-24  Score=133.78  Aligned_cols=66  Identities=30%  Similarity=0.532  Sum_probs=62.4

Q ss_pred             hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ..++++.+|||||+||+++|+|++.+|++++|||||+|||+.+++.+.+.+.++.+ |.|+|++||+
T Consensus       139 ~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~  204 (250)
T PRK14247        139 RLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHF  204 (250)
T ss_pred             hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCC
Confidence            56888999999999999999999999999999999999999999999999999854 8999999996

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.91  E-value=4.1e-24  Score=127.57  Aligned_cols=59  Identities=32%  Similarity=0.604  Sum_probs=57.1

Q ss_pred             CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           14 YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        14 lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ||+||+||+++|+|++.+|+++||||||+|||+.+++.+.+.+++++++|.|+|++||+
T Consensus        97 LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~  155 (173)
T cd03246          97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHR  155 (173)
T ss_pred             cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            99999999999999999999999999999999999999999999987679999999996

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.91  E-value=4e-24  Score=132.76  Aligned_cols=72  Identities=26%  Similarity=0.464  Sum_probs=66.9

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +++.+..++.+.+||+||+||+++|++++.+|++++|||||+|||+.+++.+.+++.++.++ |+|||++||+
T Consensus       118 ~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~  190 (237)
T TIGR00968       118 VQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHD  190 (237)
T ss_pred             cCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            35666788899999999999999999999999999999999999999999999999998765 8999999996

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.91  E-value=4.9e-24  Score=134.21  Aligned_cols=72  Identities=24%  Similarity=0.402  Sum_probs=67.6

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+++..++.+.+||+||+||+++|++++.+|+++|+||||++||+.+++.+.+.++++.++++|||++||+
T Consensus       127 ~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd  198 (255)
T cd03236         127 LELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHD  198 (255)
T ss_pred             cCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence            467777889999999999999999999999999999999999999999999999999987778999999996

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.91  E-value=2.1e-24  Score=146.22  Aligned_cols=71  Identities=32%  Similarity=0.566  Sum_probs=66.9

Q ss_pred             CCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            2 GLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         2 ~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      |+. ++.+++|.+||||||||++|||||+.+|+++++||||+.||+..+..+.++++++.++ |.|++|||||
T Consensus       417 gL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHD  489 (539)
T COG1123         417 GLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHD  489 (539)
T ss_pred             CCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCC
Confidence            443 3789999999999999999999999999999999999999999999999999999876 9999999997

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.91  E-value=5.3e-24  Score=134.41  Aligned_cols=71  Identities=25%  Similarity=0.442  Sum_probs=65.6

Q ss_pred             CCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            2 GLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         2 ~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      |+. ...++++.+||+||+||+++|++++.+|+++||||||+|||+.+++.+.+++.++.++ |.|+|++||+
T Consensus       139 gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~  211 (268)
T PRK10419        139 DLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHD  211 (268)
T ss_pred             CCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECC
Confidence            554 4678899999999999999999999999999999999999999999999999998765 8999999996

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.91  E-value=5.7e-24  Score=126.21  Aligned_cols=60  Identities=32%  Similarity=0.595  Sum_probs=57.5

Q ss_pred             CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           13 RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        13 ~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +||+||+||+++|+|++.+|+++++||||++||+.+++.+.+.++++.++|.|+|++||+
T Consensus        82 qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~  141 (163)
T cd03216          82 QLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHR  141 (163)
T ss_pred             ecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            399999999999999999999999999999999999999999999987678999999996

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.91  E-value=8.8e-25  Score=142.58  Aligned_cols=72  Identities=31%  Similarity=0.607  Sum_probs=68.6

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      ++++++.+++|.+|||||+|||++||||+.+|++++||||+++||..-+..+...++++.++ |.|+|++|||
T Consensus       124 V~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHD  196 (352)
T COG3842         124 VGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHD  196 (352)
T ss_pred             cCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence            47888999999999999999999999999999999999999999999999999999998765 9999999997

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=4e-24  Score=134.72  Aligned_cols=67  Identities=30%  Similarity=0.580  Sum_probs=62.7

Q ss_pred             chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +..++++.+|||||+||+++|++++.+|+++||||||+|||+.+++.+.++++++.+ +.|||++||+
T Consensus       156 ~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~  222 (268)
T PRK14248        156 DRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHN  222 (268)
T ss_pred             HHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeC
Confidence            456788999999999999999999999999999999999999999999999999865 6899999996

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=5.2e-24  Score=132.99  Aligned_cols=67  Identities=27%  Similarity=0.561  Sum_probs=62.8

Q ss_pred             chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +..++++.+||+||+||+++||+++.+|+++||||||+|||+.++..+.++++++. ++.|||++||+
T Consensus       139 ~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~  205 (251)
T PRK14249        139 DNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHN  205 (251)
T ss_pred             hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCC
Confidence            45678999999999999999999999999999999999999999999999999884 58999999996

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.91  E-value=5.9e-24  Score=130.38  Aligned_cols=66  Identities=29%  Similarity=0.479  Sum_probs=59.9

Q ss_pred             hcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH--HHHHHHhCCceEEEEecC
Q psy858            7 RHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWA--VLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         7 ~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~--~l~~~~~~g~til~~~h~   72 (72)
                      .++++.+||+||+||++||++++.+|+++||||||+|||+.+++.+.+  ++..+++.|.|+|++||+
T Consensus       134 ~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~  201 (218)
T cd03290         134 IGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHK  201 (218)
T ss_pred             cccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCC
Confidence            456789999999999999999999999999999999999999999998  666655568999999996

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.91  E-value=6.3e-24  Score=133.92  Aligned_cols=66  Identities=27%  Similarity=0.563  Sum_probs=62.0

Q ss_pred             hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ..++++.+|||||+||+++|++++.+|+++||||||+|||+.+++.+.++++++.+ +.|||++||+
T Consensus       156 ~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~  221 (267)
T PRK14235        156 RLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHS  221 (267)
T ss_pred             HhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcC
Confidence            45778999999999999999999999999999999999999999999999999865 7899999996

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.91  E-value=4.4e-24  Score=134.04  Aligned_cols=67  Identities=28%  Similarity=0.557  Sum_probs=62.7

Q ss_pred             chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +..++++.+|||||+||+++|+|++.+|+++||||||+|||+.+++.+.+.++++. ++.|||++||+
T Consensus       148 ~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~  214 (260)
T PRK10744        148 DKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHN  214 (260)
T ss_pred             HHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCC
Confidence            45678899999999999999999999999999999999999999999999999985 47899999996

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.91  E-value=4.8e-24  Score=144.82  Aligned_cols=72  Identities=21%  Similarity=0.358  Sum_probs=67.5

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +++.+..++++.+||||||||+++|+|++.+|+++||||||+|||+.+++.+.+.|.+++++|.|||++||+
T Consensus       131 lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHd  202 (549)
T PRK13545        131 ADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHS  202 (549)
T ss_pred             cCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence            356677889999999999999999999999999999999999999999999999999987678999999996

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.91  E-value=4.5e-24  Score=133.10  Aligned_cols=67  Identities=30%  Similarity=0.566  Sum_probs=62.5

Q ss_pred             chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +..++++.+|||||+||+++|++++.+|+++||||||+|||+.+++.+.+.++++. ++.|||++||+
T Consensus       138 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~  204 (250)
T PRK14240        138 DRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-KDYTIVIVTHN  204 (250)
T ss_pred             HHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEEeC
Confidence            34578899999999999999999999999999999999999999999999999985 47899999996

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=5.9e-24  Score=132.73  Aligned_cols=66  Identities=23%  Similarity=0.493  Sum_probs=61.7

Q ss_pred             hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ..++.+.+|||||+||+++|++++.+|+++||||||+|||+.+++.+.+.+.++. +|.|||++||+
T Consensus       142 ~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~  207 (251)
T PRK14244        142 RLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHS  207 (251)
T ss_pred             HhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCC
Confidence            3567889999999999999999999999999999999999999999999999885 48999999996

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.91  E-value=6.7e-24  Score=133.02  Aligned_cols=67  Identities=28%  Similarity=0.584  Sum_probs=62.7

Q ss_pred             chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +..++++.+|||||+||+++|+|++.+|+++||||||+|||+.++..+.+++.++++ +.|||++||+
T Consensus       140 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~  206 (258)
T PRK14241        140 DRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHN  206 (258)
T ss_pred             hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecC
Confidence            456788999999999999999999999999999999999999999999999999854 6899999996

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=7.2e-24  Score=132.14  Aligned_cols=66  Identities=33%  Similarity=0.536  Sum_probs=62.1

Q ss_pred             hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ..++++.+|||||+||+++|||++++|+++||||||+|||+.++..+.+.+.++.+ |.|+|++||+
T Consensus       135 ~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~  200 (246)
T PRK14269        135 KLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHN  200 (246)
T ss_pred             HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecC
Confidence            46778999999999999999999999999999999999999999999999999864 8999999996

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=6.3e-24  Score=132.62  Aligned_cols=67  Identities=30%  Similarity=0.558  Sum_probs=62.7

Q ss_pred             chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +..++++.+|||||+||+++|++++.+|+++|+||||+|||+.+++.+.+.|+++.+ +.|||++||+
T Consensus       141 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~  207 (253)
T PRK14267        141 DRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHS  207 (253)
T ss_pred             hhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECC
Confidence            346788999999999999999999999999999999999999999999999999865 6899999996

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.91  E-value=6.3e-24  Score=132.46  Aligned_cols=67  Identities=28%  Similarity=0.509  Sum_probs=62.5

Q ss_pred             chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +..++++.+||+||+||+++|+|++.+|+++||||||+|||+.+++.+.++|+++.+ +.|||++||+
T Consensus       140 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~  206 (252)
T PRK14239        140 DRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRS  206 (252)
T ss_pred             HHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECC
Confidence            346788999999999999999999999999999999999999999999999999864 6899999996

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=6.5e-24  Score=134.42  Aligned_cols=67  Identities=25%  Similarity=0.507  Sum_probs=62.8

Q ss_pred             chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +..++++.+|||||+||+++|+|++.+|+++||||||+|||+.+++.+.++|.++.+ +.|||++||+
T Consensus       153 ~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~  219 (274)
T PRK14265        153 DKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHN  219 (274)
T ss_pred             HHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCC
Confidence            456788999999999999999999999999999999999999999999999999864 7899999996

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.90  E-value=9.9e-24  Score=129.41  Aligned_cols=69  Identities=25%  Similarity=0.346  Sum_probs=62.5

Q ss_pred             CcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         3 l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ++...++++.+||+||+||+++|++++.+|+++||||||+|||+.+++.+.+.++++.+ +.|||++||+
T Consensus       129 l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~  197 (221)
T cd03244         129 LDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHR  197 (221)
T ss_pred             cccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCC
Confidence            33344678999999999999999999999999999999999999999999999998754 6899999996

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=9.6e-24  Score=131.78  Aligned_cols=67  Identities=28%  Similarity=0.563  Sum_probs=62.8

Q ss_pred             chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +..++++.+||+||+||+++|++++.+|+++||||||+|||+.+++.+.+.++++.+ +.|+|++||+
T Consensus       139 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~  205 (251)
T PRK14270        139 DDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHN  205 (251)
T ss_pred             hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcC
Confidence            456788999999999999999999999999999999999999999999999999866 6899999996

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=8.9e-24  Score=131.79  Aligned_cols=67  Identities=30%  Similarity=0.568  Sum_probs=62.5

Q ss_pred             chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +..++++.+|||||+||+++|++++.+|+++||||||+|||+.+++.+.+.++++.+ +.|+|++||+
T Consensus       140 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~  206 (252)
T PRK14272        140 DRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHN  206 (252)
T ss_pred             hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCC
Confidence            345788999999999999999999999999999999999999999999999999864 7999999996

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.90  E-value=1.1e-23  Score=125.70  Aligned_cols=59  Identities=51%  Similarity=0.905  Sum_probs=57.1

Q ss_pred             CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           14 YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        14 lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ||+||+||+++|++++.+|+++++||||++||+.+++.+.+.++++.++|.|+|++||+
T Consensus        96 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~  154 (173)
T cd03230          96 LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHI  154 (173)
T ss_pred             cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCC
Confidence            99999999999999999999999999999999999999999999987778999999996

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=1.1e-23  Score=132.37  Aligned_cols=68  Identities=28%  Similarity=0.533  Sum_probs=63.2

Q ss_pred             chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858            5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR   72 (72)
Q Consensus         5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~   72 (72)
                      +..++++.+|||||+||+++|++++.+|+++||||||+|||+.++..+.+.++++++ .|.|||++||+
T Consensus       142 ~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~  210 (261)
T PRK14258        142 HKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHN  210 (261)
T ss_pred             hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence            346788899999999999999999999999999999999999999999999999865 48999999996

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.90  E-value=1.3e-23  Score=127.89  Aligned_cols=63  Identities=29%  Similarity=0.524  Sum_probs=59.5

Q ss_pred             cCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           10 ESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        10 ~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ...+||+||+||+++|++++.+|+++||||||++||+.+++.+.+.+.++.+++.|+|++||+
T Consensus       101 ~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~  163 (200)
T cd03217         101 VNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHY  163 (200)
T ss_pred             ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence            446899999999999999999999999999999999999999999999987678999999996

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.90  E-value=1.1e-23  Score=126.64  Aligned_cols=59  Identities=34%  Similarity=0.623  Sum_probs=57.0

Q ss_pred             CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           14 YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        14 lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ||+||+||+++|+|++.+|+++||||||+|||+.+++.+.+.++++.++|.|+|++||+
T Consensus       105 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~  163 (182)
T cd03215         105 LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSE  163 (182)
T ss_pred             cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            99999999999999999999999999999999999999999999987678999999996

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=1.2e-23  Score=131.36  Aligned_cols=67  Identities=31%  Similarity=0.554  Sum_probs=62.6

Q ss_pred             chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +..++.+.+||+||+||+++|++++.+|+++||||||+|||+.+++.+.+++.++.+ +.|+|++||+
T Consensus       140 ~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~  206 (252)
T PRK14255        140 DHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHS  206 (252)
T ss_pred             hHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECC
Confidence            456788999999999999999999999999999999999999999999999999865 5899999996

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=9.2e-24  Score=134.46  Aligned_cols=67  Identities=24%  Similarity=0.546  Sum_probs=62.7

Q ss_pred             chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +..++++.+||||||||++||++++.+|+++||||||+|||+.+++.+.+.|+++++ +.|||++||+
T Consensus       172 ~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~  238 (285)
T PRK14254        172 DQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHN  238 (285)
T ss_pred             HHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCC
Confidence            356788999999999999999999999999999999999999999999999999875 4799999996

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.90  E-value=1.3e-23  Score=125.85  Aligned_cols=59  Identities=42%  Similarity=0.743  Sum_probs=57.2

Q ss_pred             CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858           14 YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus        14 lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      ||+||+||+++|++++++|++++|||||+|||+.++..+.+++.+++++ |.|++++||+
T Consensus       101 lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~  160 (178)
T cd03229         101 LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHD  160 (178)
T ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            9999999999999999999999999999999999999999999998876 8999999996

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.90  E-value=1e-23  Score=133.28  Aligned_cols=67  Identities=31%  Similarity=0.581  Sum_probs=62.8

Q ss_pred             chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +..++++.+|||||+||+++|++++.+|+++||||||+|||+.++..+.+.+.++.+ +.|||++||+
T Consensus       159 ~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~  225 (271)
T PRK14238        159 DRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHN  225 (271)
T ss_pred             HHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcC
Confidence            456788999999999999999999999999999999999999999999999999865 7999999996

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.90  E-value=1.4e-23  Score=127.69  Aligned_cols=68  Identities=24%  Similarity=0.391  Sum_probs=60.3

Q ss_pred             chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCceEEEEecC
Q psy858            5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWA-VLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~-~l~~~~~~g~til~~~h~   72 (72)
                      ...++++.+||+||+||+++|++++.+|+++|+||||++||+.+++.+.+ ++.+..++|.|||++||+
T Consensus       119 ~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~  187 (204)
T cd03250         119 TEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQ  187 (204)
T ss_pred             ceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCC
Confidence            34566788999999999999999999999999999999999999999988 456665568999999996

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=1.1e-23  Score=131.39  Aligned_cols=67  Identities=31%  Similarity=0.584  Sum_probs=62.3

Q ss_pred             chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ...++++.+|||||+||+++|+|++.+|+++||||||+|||+.+++.+.+.+.++.+ +.|||++||+
T Consensus       139 ~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~  205 (251)
T PRK14251        139 DNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHN  205 (251)
T ss_pred             HHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECC
Confidence            345788999999999999999999999999999999999999999999999999854 6899999996

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.90  E-value=1.2e-23  Score=127.07  Aligned_cols=72  Identities=28%  Similarity=0.555  Sum_probs=67.7

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+.+..+-+|.+||||++|||+||||++..|++++.||||.+||..+.+.+.+++-.+.++ |.|.+++|||
T Consensus       134 vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD  206 (228)
T COG4181         134 VGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHD  206 (228)
T ss_pred             hCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCC
Confidence            46777888899999999999999999999999999999999999999999999999988765 9999999997

>PRK13409 putative ATPase RIL; Provisional

Probab=99.90  E-value=1.2e-23  Score=144.35  Aligned_cols=71  Identities=28%  Similarity=0.520  Sum_probs=67.6

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +++.+..++++.+|||||+||++||++++.+|+++||||||++||+..+..+.++++++.+ |.|||++||+
T Consensus       200 l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd  270 (590)
T PRK13409        200 LGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHD  270 (590)
T ss_pred             cCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCC
Confidence            4677788999999999999999999999999999999999999999999999999999987 9999999996

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=1.3e-23  Score=131.04  Aligned_cols=66  Identities=35%  Similarity=0.635  Sum_probs=62.3

Q ss_pred             hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ..++++.+||+||+||+++|+|++.+|+++||||||+|||+.++..+.+++.++.+ +.|+|++||+
T Consensus       139 ~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~  204 (250)
T PRK14262        139 ELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHN  204 (250)
T ss_pred             HHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCC
Confidence            46788999999999999999999999999999999999999999999999999864 7899999996

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=1.6e-23  Score=130.58  Aligned_cols=67  Identities=28%  Similarity=0.587  Sum_probs=62.3

Q ss_pred             chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +..++++.+|||||+||++||++++.+|+++||||||+|||+.++..+.+++.++.+ +.|||++||+
T Consensus       137 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~  203 (249)
T PRK14253        137 DRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHS  203 (249)
T ss_pred             HHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecC
Confidence            345778899999999999999999999999999999999999999999999999865 6899999996

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.90  E-value=1.9e-23  Score=126.50  Aligned_cols=60  Identities=32%  Similarity=0.580  Sum_probs=57.9

Q ss_pred             CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           13 RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        13 ~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|||||+||+++|+|++.+|+++|+||||+|||+.+++.+++.++++.+.|.|+|++||+
T Consensus       108 ~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~  167 (192)
T cd03232         108 GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQ  167 (192)
T ss_pred             cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcC
Confidence            899999999999999999999999999999999999999999999987678999999996

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=1.8e-23  Score=131.12  Aligned_cols=66  Identities=30%  Similarity=0.588  Sum_probs=62.1

Q ss_pred             hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ..++++.+|||||+||+++|++++.+|+++||||||+|||+.++..+.+.+.++.+ +.|+|++||+
T Consensus       148 ~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~  213 (259)
T PRK14274        148 RLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHN  213 (259)
T ss_pred             hhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcC
Confidence            45788999999999999999999999999999999999999999999999999864 7899999996

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.90  E-value=1.3e-23  Score=132.26  Aligned_cols=66  Identities=27%  Similarity=0.537  Sum_probs=62.0

Q ss_pred             hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ..++.+.+|||||+||+++|+|++.+|+++||||||+|||+.+++.+.+.+.++.+ +.|||++||+
T Consensus       144 ~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~  209 (264)
T PRK14243        144 KLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHN  209 (264)
T ss_pred             HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecC
Confidence            46778999999999999999999999999999999999999999999999999865 5899999996

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=1.5e-23  Score=131.59  Aligned_cols=67  Identities=25%  Similarity=0.498  Sum_probs=62.8

Q ss_pred             chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +..++++.+||+||+||+++|+|++.+|+++||||||+|||+.++..+.+.+.++++ +.|||++||+
T Consensus       142 ~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~  208 (259)
T PRK14260        142 DKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHN  208 (259)
T ss_pred             hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCC
Confidence            456788999999999999999999999999999999999999999999999999865 6899999996

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=1.5e-23  Score=133.47  Aligned_cols=67  Identities=25%  Similarity=0.529  Sum_probs=62.6

Q ss_pred             chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +..++++.+|||||+||+++|+|++.+|+++||||||+|||+.+++.+.+.++++.+ +.|||++||+
T Consensus       174 ~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~  240 (286)
T PRK14275        174 DRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHN  240 (286)
T ss_pred             hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCC
Confidence            456788999999999999999999999999999999999999999999999998764 6899999996

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.90  E-value=2.4e-23  Score=126.26  Aligned_cols=60  Identities=38%  Similarity=0.761  Sum_probs=57.9

Q ss_pred             CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           13 RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        13 ~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +||+||+||+++|+|++.+|+++|+||||+|||+.+++.+.+.++++.++|.|+|++||+
T Consensus       111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~  170 (194)
T cd03213         111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQ  170 (194)
T ss_pred             cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence            799999999999999999999999999999999999999999999987679999999996

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=1.9e-23  Score=130.53  Aligned_cols=66  Identities=24%  Similarity=0.531  Sum_probs=61.9

Q ss_pred             hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ..++.+.+||+||+||+++|++++.+|+++||||||+|||+.+++.+.+.++++.+ +.|||++||+
T Consensus       141 ~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~  206 (252)
T PRK14256        141 RLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHN  206 (252)
T ss_pred             HhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECC
Confidence            45678999999999999999999999999999999999999999999999999865 6899999996

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.90  E-value=2.1e-23  Score=131.81  Aligned_cols=66  Identities=32%  Similarity=0.565  Sum_probs=62.3

Q ss_pred             hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ..++++.+||+||+||+++|++++.+|+++||||||+|||+.++..+.+.+.++.+ +.|+|++||+
T Consensus       161 ~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~  226 (272)
T PRK14236        161 RLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHN  226 (272)
T ss_pred             HhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCC
Confidence            46788999999999999999999999999999999999999999999999999865 7899999996

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.90  E-value=1.5e-23  Score=126.15  Aligned_cols=71  Identities=28%  Similarity=0.566  Sum_probs=67.9

Q ss_pred             CCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         2 ~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      .+.+++|+.|-.|||||+||++||||++.+|+++++||||+.|||.-...+.++|+++...|.|-+++||.
T Consensus       130 rl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthe  200 (242)
T COG4161         130 RLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHE  200 (242)
T ss_pred             ccccccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEee
Confidence            46789999999999999999999999999999999999999999999999999999998889999999994

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.90  E-value=3.7e-23  Score=130.83  Aligned_cols=72  Identities=28%  Similarity=0.446  Sum_probs=66.2

Q ss_pred             CCCcc-hhcCcCCCCChHHHHHHHHHHHHhcC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTE-YRHRESGRYSGGNKRKLSTAMALIGD---PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~-~~~~~~~~lS~G~~qr~~ia~~l~~~---p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+.. ..++++.+|||||+||+++|++++.+   |+++||||||+|||+..++.+.+.+.++.++|.|+|++||+
T Consensus       156 vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~  231 (261)
T cd03271         156 VGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHN  231 (261)
T ss_pred             cCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            35655 47889999999999999999999996   79999999999999999999999999988779999999996

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.90  E-value=3.1e-23  Score=126.37  Aligned_cols=64  Identities=25%  Similarity=0.344  Sum_probs=60.3

Q ss_pred             cCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            8 HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         8 ~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ++++.+||+||+||+++||+++.+|+++||||||+|||+.+++.+.+.++++. +|.|+|++||+
T Consensus       120 ~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~  183 (207)
T cd03369         120 SEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHR  183 (207)
T ss_pred             cCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCC
Confidence            56788999999999999999999999999999999999999999999999875 48999999996

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=2.6e-23  Score=129.68  Aligned_cols=66  Identities=26%  Similarity=0.533  Sum_probs=62.0

Q ss_pred             hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ..++++.+||+||+||+++|++++.+|++++|||||+|||+.++..+.++++++.+ +.|||++||+
T Consensus       139 ~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~  204 (250)
T PRK14266        139 KLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHN  204 (250)
T ss_pred             HHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECC
Confidence            45788999999999999999999999999999999999999999999999999854 7899999996

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.90  E-value=2.9e-23  Score=124.28  Aligned_cols=61  Identities=34%  Similarity=0.755  Sum_probs=58.0

Q ss_pred             CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           11 SGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        11 ~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +.+||+||+||+++|||++.+|+++||||||++||+.+++.+++.+.++. ++.|+|++||+
T Consensus        96 ~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~  156 (178)
T cd03247          96 GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHH  156 (178)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecC
Confidence            67899999999999999999999999999999999999999999999875 58999999996

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=2.5e-23  Score=129.99  Aligned_cols=66  Identities=26%  Similarity=0.557  Sum_probs=62.1

Q ss_pred             hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ..++.+.+||+||+||+++|++++.+|+++||||||+|||+.+++.+.+.++++.+ +.|||++||+
T Consensus       142 ~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~  207 (253)
T PRK14261        142 RLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHN  207 (253)
T ss_pred             HhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcC
Confidence            46788999999999999999999999999999999999999999999999999865 6899999996

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=2.8e-23  Score=133.26  Aligned_cols=67  Identities=25%  Similarity=0.536  Sum_probs=62.5

Q ss_pred             chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ...++++.+|||||+||++||+|++++|+++||||||+|||+.+++.+.++|+++.+ +.|||++||+
T Consensus       192 ~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~  258 (305)
T PRK14264        192 DRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHN  258 (305)
T ss_pred             HHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcC
Confidence            345788999999999999999999999999999999999999999999999999876 5899999996

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.89  E-value=2.3e-23  Score=155.91  Aligned_cols=72  Identities=60%  Similarity=1.023  Sum_probs=68.5

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+.++.++++.+||||||||+++|+|++.+|++++|||||+|||+.+++.++++|.+++++|+|||++||+
T Consensus      2058 lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~ 2129 (2272)
T TIGR01257      2058 LGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHS 2129 (2272)
T ss_pred             cCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            467788999999999999999999999999999999999999999999999999999987779999999996

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.89  E-value=4.5e-23  Score=130.04  Aligned_cols=67  Identities=28%  Similarity=0.549  Sum_probs=62.7

Q ss_pred             chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ...++++.+||+||+||+++|++++++|+++||||||+|||+.++..+.+++.++. ++.|||++||+
T Consensus       155 ~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~  221 (267)
T PRK14237        155 DDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHN  221 (267)
T ss_pred             hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecC
Confidence            35678899999999999999999999999999999999999999999999999985 47899999996

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.89  E-value=1.8e-23  Score=138.51  Aligned_cols=72  Identities=36%  Similarity=0.623  Sum_probs=67.1

Q ss_pred             CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|++ ...++||.++|||||||++||||++.+|++++|||||+.||...+.++.++++++.++ |.+.+|+|||
T Consensus       413 VGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHD  486 (534)
T COG4172         413 VGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHD  486 (534)
T ss_pred             cCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEecc
Confidence            3564 4789999999999999999999999999999999999999999999999999999764 9999999997

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.89  E-value=5.8e-23  Score=128.29  Aligned_cols=72  Identities=35%  Similarity=0.631  Sum_probs=69.2

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +||.+.++.++.+||+|+|+++.|||||+.+|++++||||.+|+.+.....+.+.|+++++. |.||++|.||
T Consensus       137 vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHd  209 (250)
T COG0411         137 VGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHD  209 (250)
T ss_pred             cCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence            47889999999999999999999999999999999999999999999999999999999874 7999999997

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.89  E-value=6.6e-23  Score=121.95  Aligned_cols=60  Identities=37%  Similarity=0.625  Sum_probs=56.5

Q ss_pred             cCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           10 ESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        10 ~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ++.+||+||+||+++|++++.+|+++||||||++||+.+++.+.+.+.++   +.|+|++||+
T Consensus        88 ~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~  147 (166)
T cd03223          88 WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHR  147 (166)
T ss_pred             CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCC
Confidence            46789999999999999999999999999999999999999999999875   5899999996

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.89  E-value=1.8e-23  Score=128.32  Aligned_cols=72  Identities=29%  Similarity=0.557  Sum_probs=68.6

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+++..++++-+||||||||+.||||++.+|++++||||+..||.-.++++.+++.++++. |+.++++||+
T Consensus       120 VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~  192 (259)
T COG4525         120 VGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHD  192 (259)
T ss_pred             hCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEecc
Confidence            47888889999999999999999999999999999999999999999999999999999765 9999999996

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.89  E-value=6.9e-23  Score=129.91  Aligned_cols=66  Identities=26%  Similarity=0.479  Sum_probs=61.6

Q ss_pred             hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ..++.+.+|||||+||+++||+++.+|+++||||||+|||+.+++.+.+.+.++.+ +.|||++||+
T Consensus       156 ~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~  221 (276)
T PRK14271        156 RLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHN  221 (276)
T ss_pred             HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCC
Confidence            35678899999999999999999999999999999999999999999999999865 5899999996

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.89  E-value=5.2e-23  Score=129.58  Aligned_cols=66  Identities=29%  Similarity=0.528  Sum_probs=61.2

Q ss_pred             hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ..++++.+||+||+||+++|||++.+|+++||||||+|||+.++..+++.+.++. ++.|+|++||+
T Consensus       142 ~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~  207 (261)
T PRK14263        142 KLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHN  207 (261)
T ss_pred             hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCC
Confidence            3456788999999999999999999999999999999999999999999999985 47899999996

>PLN03211 ABC transporter G-25; Provisional

Probab=99.89  E-value=5e-23  Score=142.74  Aligned_cols=71  Identities=35%  Similarity=0.594  Sum_probs=64.4

Q ss_pred             CCcchh-----cCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            2 GLTEYR-----HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         2 ~l~~~~-----~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      |+.+..     ++.++.||||||||++||++++.+|++++|||||+|||+.++..+.+.+++++++|+|||+++|+
T Consensus       190 gL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~  265 (659)
T PLN03211        190 GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQ  265 (659)
T ss_pred             CChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence            555544     34567899999999999999999999999999999999999999999999988779999999996

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.89  E-value=5.8e-23  Score=122.44  Aligned_cols=58  Identities=36%  Similarity=0.743  Sum_probs=55.6

Q ss_pred             CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           14 YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        14 lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ||+||+||+++|++++.+|+++||||||+|||+.+++.+.+++.++.+ +.|+|++||+
T Consensus        97 LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~  154 (171)
T cd03228          97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHR  154 (171)
T ss_pred             hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecC
Confidence            999999999999999999999999999999999999999999998854 7999999996

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.89  E-value=7.8e-23  Score=128.54  Aligned_cols=66  Identities=27%  Similarity=0.500  Sum_probs=62.1

Q ss_pred             hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ..++.+..||+||+||+++|++++.+|+++++||||+|||+.+++.+.+++.++.+ +.|||++||+
T Consensus       146 ~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~  211 (257)
T PRK14246        146 RLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHN  211 (257)
T ss_pred             hhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECC
Confidence            46788999999999999999999999999999999999999999999999998854 6999999996

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.89  E-value=5.9e-23  Score=133.17  Aligned_cols=67  Identities=28%  Similarity=0.568  Sum_probs=62.5

Q ss_pred             chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ...++++.+||||||||+++|||++.+|+++||||||++||+.+.+.+.+.|+++.+ +.|+|++||+
T Consensus       217 ~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~  283 (329)
T PRK14257        217 DDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHS  283 (329)
T ss_pred             hhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCC
Confidence            456788999999999999999999999999999999999999999999999998865 7999999996

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.89  E-value=6.7e-23  Score=128.98  Aligned_cols=67  Identities=30%  Similarity=0.533  Sum_probs=62.5

Q ss_pred             chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +..++.+.+||+||+||+++|++++.+|+++||||||+|||+.+++.+.+.+.++.+ +.|||++||+
T Consensus       153 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~  219 (265)
T PRK14252        153 DRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHN  219 (265)
T ss_pred             HHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecC
Confidence            456788999999999999999999999999999999999999999999999999865 6899999996

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.89  E-value=1.7e-23  Score=133.55  Aligned_cols=72  Identities=26%  Similarity=0.535  Sum_probs=69.2

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+++..+++|..|||||||||+|+|||.+.|++++||||.++||..-+++++..+..++++ ...|+++||.
T Consensus       116 LGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS  188 (352)
T COG4148         116 LGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHS  188 (352)
T ss_pred             hCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecC
Confidence            47889999999999999999999999999999999999999999999999999999999877 8999999995

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.89  E-value=5.2e-23  Score=154.04  Aligned_cols=71  Identities=46%  Similarity=0.854  Sum_probs=67.4

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+++..++++.+||||||||+++|+|++.+|+++||||||+|||+.+++.++++|++++ +|+|||++||+
T Consensus      1049 vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHd 1119 (2272)
T TIGR01257      1049 TGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHH 1119 (2272)
T ss_pred             cCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECC
Confidence            477888999999999999999999999999999999999999999999999999999985 59999999996

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.89  E-value=1e-22  Score=122.79  Aligned_cols=59  Identities=22%  Similarity=0.443  Sum_probs=56.5

Q ss_pred             CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-ceEEEEecC
Q psy858           14 YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTG-QSIVLTSHR   72 (72)
Q Consensus        14 lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g-~til~~~h~   72 (72)
                      ||+|||||+++|++++.+|+++++||||++||+..++.+.+.+.++.+++ .|++++||+
T Consensus        72 LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~  131 (177)
T cd03222          72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHD  131 (177)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECC
Confidence            99999999999999999999999999999999999999999999987664 999999996

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.89  E-value=9.6e-23  Score=138.29  Aligned_cols=70  Identities=31%  Similarity=0.535  Sum_probs=63.1

Q ss_pred             CcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         3 l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ++....+...+||||||||+++|||++++|+++||||||++||+.+++.+.+.+.++...|+|+|++||+
T Consensus       444 l~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~  513 (544)
T TIGR01842       444 YDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHR  513 (544)
T ss_pred             cccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCC
Confidence            3444556678899999999999999999999999999999999999999999999876568999999996

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.89  E-value=9.7e-23  Score=127.87  Aligned_cols=69  Identities=20%  Similarity=0.342  Sum_probs=62.1

Q ss_pred             CcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         3 l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ++...+.++.+||+||+||+++|+|++.+|+++||||||+|||+.+++.+.+.+.++. ++.|+|++||+
T Consensus       146 l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~  214 (257)
T cd03288         146 LDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHR  214 (257)
T ss_pred             cCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecC
Confidence            4444556778999999999999999999999999999999999999999999998864 48999999996

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.89  E-value=9.1e-23  Score=139.11  Aligned_cols=66  Identities=26%  Similarity=0.367  Sum_probs=59.6

Q ss_pred             hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      .......+||||||||++||||++++|+++||||||++||+.+.+.+.+.+.++. +++|+|++||+
T Consensus       478 ~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHr  543 (588)
T PRK11174        478 PIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQ  543 (588)
T ss_pred             ccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecC
Confidence            3344567899999999999999999999999999999999999999999998874 58999999995

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.89  E-value=4.4e-23  Score=129.67  Aligned_cols=71  Identities=31%  Similarity=0.574  Sum_probs=67.7

Q ss_pred             CCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         2 ~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ++..+..+++.+||.|++|++.+..+++++|+++||||||+||||...+.+.+.+.+++++|.|||++||.
T Consensus       119 ~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~  189 (300)
T COG4152         119 EIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHR  189 (300)
T ss_pred             cccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecch
Confidence            55677888999999999999999999999999999999999999999999999999999999999999994

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.89  E-value=1.2e-22  Score=123.91  Aligned_cols=65  Identities=17%  Similarity=0.304  Sum_probs=58.3

Q ss_pred             hcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEec
Q psy858            7 RHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSH   71 (72)
Q Consensus         7 ~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h   71 (72)
                      .++++.+||+||+||+++|+|++.+|+++||||||+|||+.+++.+++++.++.++ +.|+++++|
T Consensus       112 ~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~  177 (202)
T cd03233         112 GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLY  177 (202)
T ss_pred             cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence            46788899999999999999999999999999999999999999999999998765 667666554

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.89  E-value=4.5e-23  Score=130.31  Aligned_cols=68  Identities=29%  Similarity=0.507  Sum_probs=65.5

Q ss_pred             chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +..++++.+|||||+||++||||++.+|++++.|||++.||...+.++.+++.++.++ |.|++|+|||
T Consensus       101 ~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHD  169 (268)
T COG4608         101 EFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHD  169 (268)
T ss_pred             HHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEE
Confidence            4789999999999999999999999999999999999999999999999999999875 9999999997

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.89  E-value=9.8e-23  Score=137.63  Aligned_cols=63  Identities=33%  Similarity=0.604  Sum_probs=58.0

Q ss_pred             CcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            9 RESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         9 ~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ....+||||||||+++|||++++|+++||||||++||+.+.+.+.+.+.++. +++|+|++||+
T Consensus       466 e~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHr  528 (529)
T TIGR02868       466 EGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHH  528 (529)
T ss_pred             cccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecC
Confidence            3456799999999999999999999999999999999999999999998753 58999999996

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.88  E-value=1e-22  Score=137.88  Aligned_cols=68  Identities=22%  Similarity=0.342  Sum_probs=62.5

Q ss_pred             CC-cchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            2 GL-TEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         2 ~l-~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      |+ .+..++++.+||||||||+++|++++.+|+++||||||+|||+.+++.+.+.+.++   +.|||++|||
T Consensus       426 ~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd  494 (530)
T PRK15064        426 LFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHD  494 (530)
T ss_pred             CCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCC
Confidence            55 35678999999999999999999999999999999999999999999999999875   3599999997

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.88  E-value=1.1e-22  Score=129.38  Aligned_cols=70  Identities=27%  Similarity=0.501  Sum_probs=62.4

Q ss_pred             CCcchhcCcCCC-----------CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858            2 GLTEYRHRESGR-----------YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS   70 (72)
Q Consensus         2 ~l~~~~~~~~~~-----------lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~   70 (72)
                      |+.+..++++..           ||+||+||+++|||++.+|+++||||||++||+.+++.+.+.+++.. .++|||++|
T Consensus       116 gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~is  194 (275)
T cd03289         116 GLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSE  194 (275)
T ss_pred             CCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEE
Confidence            455556666655           99999999999999999999999999999999999999999999864 489999999


Q ss_pred             cC
Q psy858           71 HR   72 (72)
Q Consensus        71 h~   72 (72)
                      |+
T Consensus       195 H~  196 (275)
T cd03289         195 HR  196 (275)
T ss_pred             CC
Confidence            96

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.88  E-value=1.1e-22  Score=140.53  Aligned_cols=69  Identities=33%  Similarity=0.446  Sum_probs=62.6

Q ss_pred             CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+. +..++++.+||||||||+++|++|+.+|+++||||||++||+.+...+.+++.++   +.|||+||||
T Consensus       136 lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd  205 (638)
T PRK10636        136 LGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHD  205 (638)
T ss_pred             CCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCC
Confidence            3564 4678899999999999999999999999999999999999999999999988764   5699999997

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.88  E-value=2e-22  Score=136.52  Aligned_cols=68  Identities=28%  Similarity=0.407  Sum_probs=60.6

Q ss_pred             CCcch-hcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            2 GLTEY-RHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         2 ~l~~~-~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      |+.+. .++++.+||||||||+++|++++.+|+++||||||++||+.+++.+.+++.+   .|.|||++|||
T Consensus       143 gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd  211 (530)
T PRK15064        143 GIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHD  211 (530)
T ss_pred             CCChhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCC
Confidence            45443 3567899999999999999999999999999999999999999999999863   58999999997

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.88  E-value=2.8e-22  Score=124.46  Aligned_cols=70  Identities=33%  Similarity=0.655  Sum_probs=65.3

Q ss_pred             CcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         3 l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +.+..+++..+|||||||.++|||||+++|++++||||+.||-|.-.+++.+.+++++++ |.||+++.++
T Consensus       126 Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn  196 (237)
T COG0410         126 LKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQN  196 (237)
T ss_pred             HHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEecc
Confidence            456788999999999999999999999999999999999999999999999999999876 7899999874

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.88  E-value=3.6e-22  Score=136.68  Aligned_cols=68  Identities=25%  Similarity=0.496  Sum_probs=61.4

Q ss_pred             cchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            4 TEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         4 ~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +....+...+||||||||+++|||++++|+++||||||++||+.+++.+.+.+.++. +++|+|++||+
T Consensus       462 ~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~  529 (585)
T TIGR01192       462 DTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHR  529 (585)
T ss_pred             cchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcC
Confidence            334456678899999999999999999999999999999999999999999998874 58999999996

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.88  E-value=2.5e-22  Score=136.32  Aligned_cols=63  Identities=33%  Similarity=0.558  Sum_probs=58.1

Q ss_pred             CcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            9 RESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         9 ~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ....+||||||||+++||+++++|++++|||||++||+.+.+.+.+.+.++. .++|+|++||+
T Consensus       465 ~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~  527 (571)
T TIGR02203       465 ENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHR  527 (571)
T ss_pred             CCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehh
Confidence            3456799999999999999999999999999999999999999999998874 47999999996

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.88  E-value=2.3e-22  Score=138.96  Aligned_cols=69  Identities=35%  Similarity=0.571  Sum_probs=62.9

Q ss_pred             CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      |++. ...++++.+||||||||+++|++++.+|+++||||||+|||+.+++.+.+.|.++  .| |||+||||
T Consensus       417 ~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd  486 (638)
T PRK10636        417 FGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHD  486 (638)
T ss_pred             cCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCC
Confidence            3554 3678899999999999999999999999999999999999999999999999886  34 99999997

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.88  E-value=4.1e-22  Score=137.82  Aligned_cols=72  Identities=28%  Similarity=0.570  Sum_probs=67.9

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+++..++++.+||+||+||+++||+++++|+++|+||||+|||+.+++.+.++++++.++|.|++++||+
T Consensus       132 lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~  203 (648)
T PRK10535        132 LGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHD  203 (648)
T ss_pred             CCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCC
Confidence            467778899999999999999999999999999999999999999999999999999987679999999996

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.87  E-value=3.4e-22  Score=136.03  Aligned_cols=69  Identities=26%  Similarity=0.440  Sum_probs=62.5

Q ss_pred             CCCcc-hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTE-YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~-~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+.. ..++++.+||||||||+++|++++.+|+++||||||+|||+.+++.+.++|.++.  + |||++|||
T Consensus       430 ~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd  499 (552)
T TIGR03719       430 FNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHD  499 (552)
T ss_pred             CCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCC
Confidence            35643 5688999999999999999999999999999999999999999999999998862  4 89999997

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.87  E-value=3.6e-22  Score=135.99  Aligned_cols=63  Identities=32%  Similarity=0.555  Sum_probs=58.0

Q ss_pred             CcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            9 RESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         9 ~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ....+||||||||+++|||++++|+++||||||++||+.+...+.+.+.++. +++|+|++||+
T Consensus       476 ~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr  538 (582)
T PRK11176        476 ENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHR  538 (582)
T ss_pred             CCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecc
Confidence            3456799999999999999999999999999999999999999999998864 47999999996

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.87  E-value=3.1e-22  Score=136.35  Aligned_cols=63  Identities=27%  Similarity=0.448  Sum_probs=59.2

Q ss_pred             hcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            7 RHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         7 ~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      .++++.+||||||||++||++++.+|+++||||||++||+.+++.+.++++++   +.|||++||+
T Consensus       157 ~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~---~~tviiisHd  219 (556)
T PRK11819        157 WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY---PGTVVAVTHD  219 (556)
T ss_pred             ccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC---CCeEEEEeCC
Confidence            57889999999999999999999999999999999999999999999999875   2599999997

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.87  E-value=3e-22  Score=137.89  Aligned_cols=72  Identities=38%  Similarity=0.683  Sum_probs=66.1

Q ss_pred             CCCcchhcCcCC------CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESG------RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~------~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+.+..|..+.      .||||||||++||++++.+|+++++||||+|||+.++..+.+.+++++++|+|+|+++|+
T Consensus       148 lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq  225 (617)
T TIGR00955       148 LGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQ  225 (617)
T ss_pred             cCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            366677777776      599999999999999999999999999999999999999999999998779999999995

>PLN03140 ABC transporter G family member; Provisional

Probab=99.87  E-value=4.9e-22  Score=146.05  Aligned_cols=72  Identities=26%  Similarity=0.505  Sum_probs=66.7

Q ss_pred             CCCcchhcCcC-----CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRES-----GRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~-----~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+.+..|+.+     +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.+++++++|.|||+++|+
T Consensus      1002 lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq 1078 (1470)
T PLN03140       1002 VELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1078 (1470)
T ss_pred             CCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            36667777776     5899999999999999999999999999999999999999999999998889999999996

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.87  E-value=5.3e-22  Score=135.55  Aligned_cols=65  Identities=32%  Similarity=0.595  Sum_probs=59.0

Q ss_pred             hcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            7 RHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         7 ~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ......+||||||||+++|||++++|+++||||||++||+.+.+.+.+.+.++. .++|+|++||+
T Consensus       465 i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr  529 (588)
T PRK13657        465 VGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHR  529 (588)
T ss_pred             hcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEec
Confidence            334556799999999999999999999999999999999999999999998864 47999999996

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.87  E-value=4.3e-22  Score=137.40  Aligned_cols=62  Identities=32%  Similarity=0.434  Sum_probs=58.6

Q ss_pred             cCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            8 HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         8 ~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ++++.+||||||||++||++|+.+|+++||||||++||+.+++.+.++|.++   +.|||+||||
T Consensus       151 ~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~---~~tvlivsHd  212 (635)
T PRK11147        151 DAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF---QGSIIFISHD  212 (635)
T ss_pred             CCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC---CCEEEEEeCC
Confidence            7889999999999999999999999999999999999999999999999876   3599999997

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.87  E-value=4e-22  Score=122.50  Aligned_cols=70  Identities=20%  Similarity=0.191  Sum_probs=62.2

Q ss_pred             CCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         2 ~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +++...++++..||+|||||+++|+|++.+|+++|+|||++++|+.+++.+.+.+.+..+ +.++|++||+
T Consensus        93 ~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~-~~~ii~vsH~  162 (213)
T PRK15177         93 QLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ-QKGLIVLTHN  162 (213)
T ss_pred             ChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh-CCcEEEEECC
Confidence            455667889999999999999999999999999999999999999999999998865443 4689999996

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.87  E-value=5.1e-22  Score=134.16  Aligned_cols=65  Identities=31%  Similarity=0.550  Sum_probs=59.6

Q ss_pred             hcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            7 RHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         7 ~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ......+||||||||+++|||++++|+++||||||++||+.+.+.+.+.+.++. .++|+|++||+
T Consensus       452 v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~  516 (529)
T TIGR02857       452 IGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHR  516 (529)
T ss_pred             hccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecC
Confidence            344567899999999999999999999999999999999999999999998864 58999999996

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.87  E-value=7.3e-22  Score=121.22  Aligned_cols=70  Identities=23%  Similarity=0.286  Sum_probs=63.7

Q ss_pred             CcchhcCcCCCCChHHHHHHHHHHHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            3 LTEYRHRESGRYSGGNKRKLSTAMALIG----------DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         3 l~~~~~~~~~~lS~G~~qr~~ia~~l~~----------~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +++..++++.+||+||+||+++|++++.          +|+++|+||||++||+.+++.+.+.+.++++++.|++++||+
T Consensus       113 l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~  192 (213)
T cd03279         113 FDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHV  192 (213)
T ss_pred             hHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECc
Confidence            3456788899999999999999999985          578999999999999999999999999987668999999996

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.87  E-value=5.6e-22  Score=124.10  Aligned_cols=72  Identities=32%  Similarity=0.605  Sum_probs=67.4

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT--GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~--g~til~~~h~   72 (72)
                      +|+.+.++++..+||-|||||+-||||++.+|.++|||||++|||...++.+.+.+.++...  +.++++|||.
T Consensus       159 ~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh  232 (257)
T COG1119         159 LGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHH  232 (257)
T ss_pred             cchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcc
Confidence            46778899999999999999999999999999999999999999999999999999998754  8999999994

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.87  E-value=7.3e-22  Score=134.88  Aligned_cols=65  Identities=25%  Similarity=0.436  Sum_probs=59.1

Q ss_pred             hcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            7 RHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         7 ~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ......+||||||||+++|||++++|+++||||||++||+.+.+.+.+.+.++.+ ++|+|++||+
T Consensus       470 i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr  534 (592)
T PRK10790        470 LGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHR  534 (592)
T ss_pred             ccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecc
Confidence            3345678999999999999999999999999999999999999999999988754 7999999996

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.87  E-value=7.9e-22  Score=134.53  Aligned_cols=66  Identities=29%  Similarity=0.467  Sum_probs=60.2

Q ss_pred             hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      .......+||||||||+++|||++++|+++||||||++||+.+.+.+.+.++++. +|+|+|++||+
T Consensus       444 ~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~  509 (569)
T PRK10789        444 EVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHR  509 (569)
T ss_pred             eecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecc
Confidence            3445567899999999999999999999999999999999999999999998874 58999999996

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.87  E-value=7e-22  Score=134.64  Aligned_cols=69  Identities=28%  Similarity=0.429  Sum_probs=62.4

Q ss_pred             CCCcc-hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTE-YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~-~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +++.+ ..++++.+||||||||+++|++++.+|+++||||||+|||+.+++.+.+.|.++  .| |||++|||
T Consensus       432 ~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~-tvi~vtHd  501 (556)
T PRK11819        432 FNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF--PG-CAVVISHD  501 (556)
T ss_pred             CCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CC-eEEEEECC
Confidence            35643 568899999999999999999999999999999999999999999999999886  24 89999997

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.87  E-value=6.3e-22  Score=134.72  Aligned_cols=63  Identities=27%  Similarity=0.457  Sum_probs=58.9

Q ss_pred             hcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            7 RHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         7 ~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      .++++.+||||||||+++|++++.+|+++||||||++||+.++..+.+.|.++   +.|||++||+
T Consensus       155 ~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd  217 (552)
T TIGR03719       155 WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHD  217 (552)
T ss_pred             ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCC
Confidence            57889999999999999999999999999999999999999999999998775   3599999996

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.87  E-value=1.3e-21  Score=124.82  Aligned_cols=63  Identities=21%  Similarity=0.380  Sum_probs=56.3

Q ss_pred             CcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCceEEEEecC
Q psy858            9 RESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVL-SQIQKTGQSIVLTSHR   72 (72)
Q Consensus         9 ~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l-~~~~~~g~til~~~h~   72 (72)
                      +++.+||+||+||+++|++++.+|+++||||||+|||+.+++.+.+.+ ..+. ++.|||++||+
T Consensus       155 ~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~  218 (282)
T cd03291         155 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSK  218 (282)
T ss_pred             CCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCC
Confidence            456799999999999999999999999999999999999999998865 4443 57899999996

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.87  E-value=7.2e-22  Score=137.76  Aligned_cols=66  Identities=32%  Similarity=0.556  Sum_probs=60.3

Q ss_pred             hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      .......+||||||||+++|||++++|+++||||||++||+.+.+.+.+.+.+.. .|+|+|+++|+
T Consensus       602 ~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHR  667 (709)
T COG2274         602 PVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHR  667 (709)
T ss_pred             ccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEcc
Confidence            3445667899999999999999999999999999999999999999999999875 48999999995

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.87  E-value=1.5e-21  Score=114.69  Aligned_cols=59  Identities=41%  Similarity=0.811  Sum_probs=56.6

Q ss_pred             CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           14 YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        14 lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ||+||+||++++++++.+|+++++||||+|||+.++..+.+.+.++.+.+.|++++||+
T Consensus        81 lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~  139 (157)
T cd00267          81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHD  139 (157)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            99999999999999999999999999999999999999999999987667899999996

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.87  E-value=7.6e-22  Score=144.59  Aligned_cols=72  Identities=28%  Similarity=0.576  Sum_probs=66.6

Q ss_pred             CCCcchhcCcCC----CCChHHHHHHHHHHHHhcCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESG----RYSGGNKRKLSTAMALIGDPP-LVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~----~lS~G~~qr~~ia~~l~~~p~-~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+++..|+.+.    .||||||||++||++++.+|+ +++|||||+|||+.++..+.+.+++++++|+|||+++|+
T Consensus       885 l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~  961 (1394)
T TIGR00956       885 LEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQ  961 (1394)
T ss_pred             cCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence            366677788776    799999999999999999997 999999999999999999999999998789999999996

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.87  E-value=6.2e-22  Score=136.60  Aligned_cols=68  Identities=25%  Similarity=0.332  Sum_probs=61.7

Q ss_pred             CCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            2 GLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         2 ~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ++. +..++++.+||||||||+++|++++.+|+++||||||++||+.+++.+.+++.++   +.|||++|||
T Consensus       428 ~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd  496 (635)
T PRK11147        428 LFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHD  496 (635)
T ss_pred             CCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECC
Confidence            453 4578899999999999999999999999999999999999999999999988775   4599999997

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.87  E-value=1e-21  Score=136.16  Aligned_cols=65  Identities=37%  Similarity=0.615  Sum_probs=59.4

Q ss_pred             hcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            7 RHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         7 ~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ......+||||||||+++|||++++|+++||||||++||+.+.+.+.+.+.++. .++|+|++||+
T Consensus       595 i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHr  659 (694)
T TIGR03375       595 IGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHR  659 (694)
T ss_pred             ecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecC
Confidence            344567899999999999999999999999999999999999999999998875 47999999996

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.86  E-value=4.9e-22  Score=131.76  Aligned_cols=68  Identities=28%  Similarity=0.518  Sum_probs=64.5

Q ss_pred             chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      ...+++|.+||||||||+.||.|++++|+++|.||||+.||...+.+|.++++++.++ |.+++++|||
T Consensus       149 ~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHD  217 (534)
T COG4172         149 KRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHD  217 (534)
T ss_pred             hhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEecc
Confidence            3567899999999999999999999999999999999999999999999999999766 9999999997

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.86  E-value=1.6e-21  Score=113.90  Aligned_cols=59  Identities=36%  Similarity=0.507  Sum_probs=54.6

Q ss_pred             CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           11 SGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        11 ~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +.+||+||+||+++|++++++|+++++||||++||+.++..+.+.++++   +.|++++||+
T Consensus        68 ~~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~  126 (144)
T cd03221          68 FEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHD  126 (144)
T ss_pred             EccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECC
Confidence            3449999999999999999999999999999999999999999999875   4699999996

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.86  E-value=8.4e-22  Score=134.07  Aligned_cols=67  Identities=34%  Similarity=0.557  Sum_probs=61.2

Q ss_pred             CCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         2 ~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      |+.+. ++++.+||||||.|+++|++|..+|++++|||||+.||..+...+-+.|.++  .| |+|+||||
T Consensus       143 g~~~~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHD  209 (530)
T COG0488         143 GFPDE-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHD  209 (530)
T ss_pred             CCCcc-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCC
Confidence            44444 8899999999999999999999999999999999999999999999999764  46 99999997

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.86  E-value=1.5e-21  Score=133.38  Aligned_cols=64  Identities=33%  Similarity=0.653  Sum_probs=59.2

Q ss_pred             cCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            8 HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         8 ~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      .....+||||||||+++|||++++|+++||||||++||+.+.+.+.+.+.++. +++|+|++||+
T Consensus       470 ge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr  533 (574)
T PRK11160        470 GEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHR  533 (574)
T ss_pred             cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecC
Confidence            34667899999999999999999999999999999999999999999998875 48999999995

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.86  E-value=1.5e-21  Score=135.21  Aligned_cols=62  Identities=27%  Similarity=0.490  Sum_probs=56.8

Q ss_pred             cCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            8 HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         8 ~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      .....+||||||||+++|||++++|+++||||||++||+.+.+.+.+.++++   ++|+|++||+
T Consensus       583 ge~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr  644 (686)
T TIGR03797       583 SEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHR  644 (686)
T ss_pred             cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecC
Confidence            3445789999999999999999999999999999999999999999998775   5799999995

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.86  E-value=1.3e-21  Score=135.88  Aligned_cols=64  Identities=30%  Similarity=0.514  Sum_probs=57.9

Q ss_pred             hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      .......+||||||||+++|||++++|+++||||||++||+.+.+.+.+.+.+   .++|+|++||+
T Consensus       608 ~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHr  671 (710)
T TIGR03796       608 ELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHR  671 (710)
T ss_pred             eeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecC
Confidence            33445678999999999999999999999999999999999999999999875   48999999995

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.86  E-value=1.7e-21  Score=118.82  Aligned_cols=67  Identities=22%  Similarity=0.362  Sum_probs=60.7

Q ss_pred             chhcCcCCCCChHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            5 EYRHRESGRYSGGNKRKLSTAMALI----GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         5 ~~~~~~~~~lS~G~~qr~~ia~~l~----~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +..++++.+||+|||||+++|++++    .+|+++++||||+|||+..+..+.+.++++.+ +.+||++||+
T Consensus       105 ~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~  175 (197)
T cd03278         105 GKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSK-ETQFIVITHR  175 (197)
T ss_pred             CccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc-CCEEEEEECC
Confidence            3467789999999999999999987    46799999999999999999999999999865 7899999996

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>PLN03073 ABC transporter F family; Provisional

Probab=99.86  E-value=1.4e-21  Score=136.61  Aligned_cols=68  Identities=29%  Similarity=0.443  Sum_probs=62.0

Q ss_pred             CCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            2 GLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         2 ~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      |+. +..++++.+||||||||++||++++.+|+++||||||++||+.++..+.++++++   +.|||++|||
T Consensus       332 gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tviivsHd  400 (718)
T PLN03073        332 SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIVVSHA  400 (718)
T ss_pred             CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEEEEECC
Confidence            443 4567889999999999999999999999999999999999999999999999775   6799999997

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.86  E-value=1.9e-21  Score=134.93  Aligned_cols=69  Identities=26%  Similarity=0.510  Sum_probs=61.7

Q ss_pred             CcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         3 l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ++........+||||||||+++|||++++|+++||||||++||+.+.+.+.+.+.++. .++|+|++||+
T Consensus       583 l~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~  651 (694)
T TIGR01846       583 YNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHR  651 (694)
T ss_pred             cCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCC
Confidence            3444445677899999999999999999999999999999999999999999999874 58999999996

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.86  E-value=1.5e-21  Score=139.12  Aligned_cols=72  Identities=26%  Similarity=0.488  Sum_probs=66.9

Q ss_pred             CCCcch-hcCcCCCCChHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEY-RHRESGRYSGGNKRKLSTAMALIGDP--PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~-~~~~~~~lS~G~~qr~~ia~~l~~~p--~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +||... .++++.+|||||+||+.||++|.++|  +++||||||+|||+..++.+.++|+++++.|.|||+++|+
T Consensus       476 vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~  550 (943)
T PRK00349        476 VGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHD  550 (943)
T ss_pred             cccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            466554 68999999999999999999999997  8999999999999999999999999998789999999996

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=2e-21  Score=131.99  Aligned_cols=69  Identities=28%  Similarity=0.490  Sum_probs=61.4

Q ss_pred             CcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         3 l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ++.........|||||+||+++|||+.++++++++||||++||.++.+.+.+.+.++.+ ++|++++||+
T Consensus       446 Ldt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHr  514 (559)
T COG4988         446 LDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHR  514 (559)
T ss_pred             ccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcC
Confidence            33344455667999999999999999999999999999999999999999999999875 6999999996

>PLN03073 ABC transporter F family; Provisional

Probab=99.86  E-value=1.9e-21  Score=135.92  Aligned_cols=69  Identities=26%  Similarity=0.412  Sum_probs=61.4

Q ss_pred             CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+. ...++++.+||||||||++||++++.+|+++||||||+|||+.+++.+.+.+.++  .| |||++|||
T Consensus       614 ~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd  683 (718)
T PLN03073        614 FGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHD  683 (718)
T ss_pred             CCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECC
Confidence            4565 3578899999999999999999999999999999999999999999988887654  34 99999997

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.86  E-value=1.9e-21  Score=135.07  Aligned_cols=64  Identities=31%  Similarity=0.554  Sum_probs=58.3

Q ss_pred             hcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            7 RHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         7 ~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ......+||||||||+++|||++++|+++||||||++||+.+.+.+.+.+.++  .++|+|++||+
T Consensus       605 i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr  668 (708)
T TIGR01193       605 LSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHR  668 (708)
T ss_pred             ecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecc
Confidence            34456789999999999999999999999999999999999999999999874  47899999995

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.86  E-value=2.3e-21  Score=131.88  Aligned_cols=64  Identities=28%  Similarity=0.536  Sum_probs=58.9

Q ss_pred             cCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            8 HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         8 ~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      .....+||||||||+++|||++++|+++||||||++||+.+.+.+.+.++++. .++|+|++||+
T Consensus       471 ~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~  534 (576)
T TIGR02204       471 GERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHR  534 (576)
T ss_pred             CCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecc
Confidence            34567899999999999999999999999999999999999999999999875 48999999995

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.86  E-value=2.7e-21  Score=137.64  Aligned_cols=72  Identities=26%  Similarity=0.489  Sum_probs=66.2

Q ss_pred             CCCcch-hcCcCCCCChHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEY-RHRESGRYSGGNKRKLSTAMALIGDP--PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~-~~~~~~~lS~G~~qr~~ia~~l~~~p--~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +||... .++++.+|||||+||+.+|++++++|  +++||||||+|||+...+.+.++++++++.|.|||+++|+
T Consensus       474 vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd  548 (924)
T TIGR00630       474 VGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHD  548 (924)
T ss_pred             ccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence            355543 68899999999999999999999986  8999999999999999999999999998889999999996

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.86  E-value=2.4e-21  Score=142.45  Aligned_cols=65  Identities=28%  Similarity=0.500  Sum_probs=60.9

Q ss_pred             cCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858            8 HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR   72 (72)
Q Consensus         8 ~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~   72 (72)
                      .+.+.+||||||||++||||++++|+++||||||++||+.+.+.+.+.+.++.+ .|+|+|++||+
T Consensus       574 g~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHr  639 (1466)
T PTZ00265        574 GSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHR  639 (1466)
T ss_pred             CCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCC
Confidence            456789999999999999999999999999999999999999999999999865 48999999996

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.85  E-value=2.5e-21  Score=142.37  Aligned_cols=65  Identities=31%  Similarity=0.509  Sum_probs=59.3

Q ss_pred             cCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEEecC
Q psy858            8 HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHR   72 (72)
Q Consensus         8 ~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~-~~g~til~~~h~   72 (72)
                      .....+||||||||++|||||+++|+++||||||++||+.+.+.+.+.|.++. ..++|+|+|+|+
T Consensus      1353 Ge~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHR 1418 (1466)
T PTZ00265       1353 GPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHR 1418 (1466)
T ss_pred             CCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEech
Confidence            34556799999999999999999999999999999999999999999999875 358999999995

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.85  E-value=3.2e-21  Score=133.65  Aligned_cols=59  Identities=27%  Similarity=0.390  Sum_probs=55.2

Q ss_pred             CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           11 SGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        11 ~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ..+||||||||+++|||++++|+++||||||++||+...+.+.+.+++   .|.|+|++||+
T Consensus       580 ~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~  638 (659)
T TIGR00954       580 MDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHR  638 (659)
T ss_pred             ccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCc
Confidence            478999999999999999999999999999999999999999988865   38999999996

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.85  E-value=5.5e-21  Score=130.21  Aligned_cols=61  Identities=25%  Similarity=0.507  Sum_probs=55.5

Q ss_pred             CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHhCCceEEEEecC
Q psy858           12 GRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLS-QIQKTGQSIVLTSHR   72 (72)
Q Consensus        12 ~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~-~~~~~g~til~~~h~   72 (72)
                      .+||||||||+++|||++.+|+++||||||++||+.+.+.+.+.+. .+...|+|+|++||+
T Consensus       469 ~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~  530 (555)
T TIGR01194       469 TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHD  530 (555)
T ss_pred             ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence            6799999999999999999999999999999999999999988654 444568999999996

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.85  E-value=5.7e-21  Score=118.55  Aligned_cols=66  Identities=21%  Similarity=0.377  Sum_probs=59.3

Q ss_pred             hhcCcCCCCChHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            6 YRHRESGRYSGGNKRKLSTAMALIG----DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         6 ~~~~~~~~lS~G~~qr~~ia~~l~~----~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ..++++.+||+||+||+++|++++.    +|+++++||||++||+..++.+++.+.++.+ +.++++++|+
T Consensus       151 ~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~  220 (243)
T cd03272         151 DEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFR  220 (243)
T ss_pred             cccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecC
Confidence            4567899999999999999999973    5899999999999999999999999998755 7888888884

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.85  E-value=7.8e-21  Score=118.93  Aligned_cols=67  Identities=16%  Similarity=0.288  Sum_probs=61.2

Q ss_pred             chhcCcCCCCChHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            5 EYRHRESGRYSGGNKRKLSTAMALI----GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         5 ~~~~~~~~~lS~G~~qr~~ia~~l~----~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +..++++.+||+||+||+++|++++    .+|+++++||||++||+..++.+.+.++++. +|.++|++||+
T Consensus       158 ~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~  228 (251)
T cd03273         158 GVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLK  228 (251)
T ss_pred             HhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECC
Confidence            4567889999999999999999998    5789999999999999999999999999875 48899999995

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.85  E-value=2.8e-21  Score=141.66  Aligned_cols=72  Identities=21%  Similarity=0.343  Sum_probs=64.9

Q ss_pred             CCCcchhcCc-----CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRE-----SGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~-----~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+++..|++     ++.||||||||++||++++.+|+++++||||+|||+.++..+.+.|++++++ |.|+|+++|+
T Consensus       192 lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq  269 (1394)
T TIGR00956       192 YGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQ  269 (1394)
T ss_pred             cCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence            4666666654     5679999999999999999999999999999999999999999999999764 8999999996

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.85  E-value=6.7e-21  Score=129.46  Aligned_cols=62  Identities=29%  Similarity=0.472  Sum_probs=56.9

Q ss_pred             CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858           11 SGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR   72 (72)
Q Consensus        11 ~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~   72 (72)
                      ..+||||||||+++|||++++|+++||||||++||+.+.+.+.+.+.+..+ .++|+|++||+
T Consensus       447 G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~  509 (547)
T PRK10522        447 NLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHD  509 (547)
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEec
Confidence            458999999999999999999999999999999999999999998876543 58999999995

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.85  E-value=6.3e-21  Score=129.86  Aligned_cols=66  Identities=29%  Similarity=0.535  Sum_probs=59.4

Q ss_pred             hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      .......+||||||||++||||++++|++++|||||+++|+.+.+.+.+.+.++. +++|+++++|+
T Consensus       458 ~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHR  523 (567)
T COG1132         458 IVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHR  523 (567)
T ss_pred             eecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEecc
Confidence            3344556899999999999999999999999999999999999999999999776 57899999995

>KOG0061|consensus

Probab=99.85  E-value=5e-21  Score=132.03  Aligned_cols=72  Identities=35%  Similarity=0.711  Sum_probs=67.2

Q ss_pred             CCCcchhcCcCC-----CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESG-----RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~-----~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+.+++|..++     .+|||||||++||.-++.+|.++++||||+|||......+.+.+++++++|+|||++-|.
T Consensus       153 LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQ  229 (613)
T KOG0061|consen  153 LGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQ  229 (613)
T ss_pred             cCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeC
Confidence            467778888886     599999999999999999999999999999999999999999999999889999999984

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.84  E-value=7.5e-21  Score=115.62  Aligned_cols=67  Identities=33%  Similarity=0.581  Sum_probs=63.6

Q ss_pred             hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      ..|..|+.+||||+||+.|||.++..|++++|||||.|||...+.++.++++.+..+ |.+++++|||
T Consensus       144 RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHD  211 (258)
T COG4107         144 RIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHD  211 (258)
T ss_pred             cccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEech
Confidence            457789999999999999999999999999999999999999999999999999766 9999999997

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.84  E-value=6.6e-21  Score=132.77  Aligned_cols=63  Identities=29%  Similarity=0.507  Sum_probs=54.9

Q ss_pred             hcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            7 RHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         7 ~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ......+||||||||+++|||++++|+++||||||++||+.+.+.+.+ ..  ...++|+|++||+
T Consensus       611 ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHr  673 (711)
T TIGR00958       611 VGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHR  673 (711)
T ss_pred             ccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEecc
Confidence            344557899999999999999999999999999999999999998888 22  2358999999996

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.84  E-value=1.1e-20  Score=115.26  Aligned_cols=68  Identities=24%  Similarity=0.274  Sum_probs=61.1

Q ss_pred             chhcCcCCCCChHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC---CceEEEEecC
Q psy858            5 EYRHRESGRYSGGNKRKLSTAMAL----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT---GQSIVLTSHR   72 (72)
Q Consensus         5 ~~~~~~~~~lS~G~~qr~~ia~~l----~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~---g~til~~~h~   72 (72)
                      +..++++.+||+|||||+++++++    +.+|+++++||||+|+|+..+..+.+++.++.++   +.+|++++|+
T Consensus       101 ~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~  175 (198)
T cd03276         101 KAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQD  175 (198)
T ss_pred             cccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCc
Confidence            456789999999999999999999    5899999999999999999999999999987543   3689999995

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>KOG0055|consensus

Probab=99.84  E-value=5.7e-21  Score=137.60  Aligned_cols=62  Identities=31%  Similarity=0.561  Sum_probs=57.2

Q ss_pred             cCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           10 ESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        10 ~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ...+||||||||++||||++++|+++||||||++||+.+.+.+.+.|.+.. .|+|.|+++|+
T Consensus       486 ~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHR  547 (1228)
T KOG0055|consen  486 RGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHR  547 (1228)
T ss_pred             CCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeee
Confidence            345699999999999999999999999999999999999999999998754 58999999995

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=7.2e-21  Score=128.72  Aligned_cols=68  Identities=38%  Similarity=0.713  Sum_probs=61.4

Q ss_pred             cchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            4 TEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         4 ~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ....+.-...|||||+||+++||++.++.+++||||||.|||+.+.+++.+.+.+.. +|+|++++||+
T Consensus       465 ~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~-~~kTll~vTHr  532 (573)
T COG4987         465 NTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA-EGKTLLMVTHR  532 (573)
T ss_pred             hchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHh-cCCeEEEEecc
Confidence            334555677899999999999999999999999999999999999999999998865 49999999995

>KOG0059|consensus

Probab=99.84  E-value=5.2e-21  Score=135.92  Aligned_cols=72  Identities=50%  Similarity=1.008  Sum_probs=68.8

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +++.++++++++.+|||+|+|+++|.|++.+|++++|||||+|+||.+++.+|+++.+++++|+++|++||.
T Consensus       686 ~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHs  757 (885)
T KOG0059|consen  686 VGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHS  757 (885)
T ss_pred             cCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence            478889999999999999999999999999999999999999999999999999999998887799999995

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.84  E-value=1.5e-20  Score=115.07  Aligned_cols=66  Identities=24%  Similarity=0.345  Sum_probs=60.9

Q ss_pred             hcCcCCCCChHHHHH------HHHHHHHhcCCCEEEEeCCCCCCCHHHHH-HHHHHHHHHHhC-CceEEEEecC
Q psy858            7 RHRESGRYSGGNKRK------LSTAMALIGDPPLVFLDEPTSGVDPISRH-RLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         7 ~~~~~~~lS~G~~qr------~~ia~~l~~~p~~lllDEP~~gld~~~~~-~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      .++++.+||+||+||      ++++++++.+|+++++|||+++||+..++ .+.+++.++.++ |.++|++||+
T Consensus       109 ~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~  182 (204)
T cd03240         109 LLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHD  182 (204)
T ss_pred             HhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEec
Confidence            367889999999996      78999999999999999999999999999 999999998766 8899999996

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.84  E-value=1.8e-20  Score=126.46  Aligned_cols=67  Identities=27%  Similarity=0.402  Sum_probs=64.7

Q ss_pred             hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ..+.++.+||.||||.|+||+|+..+++++||||||+.|+....+.+++++++++++|.+|||+||.
T Consensus       138 ~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHr  204 (500)
T COG1129         138 DPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHR  204 (500)
T ss_pred             ChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCc
Confidence            3788999999999999999999999999999999999999999999999999999999999999995

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.84  E-value=9.8e-21  Score=118.41  Aligned_cols=65  Identities=18%  Similarity=0.294  Sum_probs=59.8

Q ss_pred             cCcCCCCChHHHHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            8 HRESGRYSGGNKRKLSTAMALIGD----PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         8 ~~~~~~lS~G~~qr~~ia~~l~~~----p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ++++.+||+||+||++++++++.+    |+++|+||||++||+..+..+.+.+.++.++|.++|++||+
T Consensus       150 ~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~  218 (247)
T cd03275         150 FRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLK  218 (247)
T ss_pred             hhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECC
Confidence            455689999999999999999864    89999999999999999999999999987668999999996

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.83  E-value=2.6e-20  Score=138.15  Aligned_cols=72  Identities=28%  Similarity=0.512  Sum_probs=66.9

Q ss_pred             CCCcch-hcCcCCCCChHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEY-RHRESGRYSGGNKRKLSTAMALIGDP--PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~-~~~~~~~lS~G~~qr~~ia~~l~~~p--~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|++.. .++.+.+|||||+||+.||+++..+|  +++||||||+|||+..++.+.++|+++++.|.|||+++||
T Consensus       463 vGL~~L~ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd  537 (1809)
T PRK00635        463 LGLPYLTPERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHD  537 (1809)
T ss_pred             ccccCCCCCCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCc
Confidence            356554 58899999999999999999999999  8999999999999999999999999998789999999997

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.83  E-value=3.7e-20  Score=132.14  Aligned_cols=71  Identities=28%  Similarity=0.439  Sum_probs=65.9

Q ss_pred             CCcc-hhcCcCCCCChHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            2 GLTE-YRHRESGRYSGGNKRKLSTAMALIGDP---PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         2 ~l~~-~~~~~~~~lS~G~~qr~~ia~~l~~~p---~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      |+.. ..++++.+|||||+||+.+|++++.+|   +++||||||+|||+..++.+.+.+.++.+.|.|||+++|+
T Consensus       818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~  892 (943)
T PRK00349        818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHN  892 (943)
T ss_pred             CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence            5543 468899999999999999999999999   9999999999999999999999999988779999999996

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.83  E-value=2.1e-20  Score=118.98  Aligned_cols=72  Identities=26%  Similarity=0.454  Sum_probs=67.8

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~   72 (72)
                      +++++..+.+++.||-|||.|+.+|.+|+++|++++|||||-|||..++..+.++++++.+ ++.||+++||+
T Consensus       144 Ldl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~  216 (325)
T COG4586         144 LDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHI  216 (325)
T ss_pred             hcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecc
Confidence            3677888999999999999999999999999999999999999999999999999999975 49999999996

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.83  E-value=5e-20  Score=113.44  Aligned_cols=70  Identities=19%  Similarity=0.226  Sum_probs=61.6

Q ss_pred             CCcchhcCcCCCCChHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            2 GLTEYRHRESGRYSGGNKRKLSTAMALIG----DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         2 ~l~~~~~~~~~~lS~G~~qr~~ia~~l~~----~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ++.+..++++..||+||+||+++|++++.    +|+++++||||+|||+.++..+++.++++. ++.+++++||+
T Consensus       116 ~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~-~~~~~iivs~~  189 (212)
T cd03274         116 QMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERT-KNAQFIVISLR  189 (212)
T ss_pred             ccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECc
Confidence            45566778899999999999999999974    579999999999999999999999999975 46788888885

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.83  E-value=3.2e-20  Score=124.47  Aligned_cols=71  Identities=25%  Similarity=0.478  Sum_probs=67.3

Q ss_pred             CCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         2 ~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      |++=..++++.+||-|+|||+.|.++|+++++++||||||+-|.|...+.++.+++.++++|+|||++||.
T Consensus       129 Gl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHK  199 (501)
T COG3845         129 GLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHK  199 (501)
T ss_pred             CCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecc
Confidence            55556788999999999999999999999999999999999999999999999999999999999999994

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.82  E-value=4.7e-20  Score=136.79  Aligned_cols=72  Identities=32%  Similarity=0.529  Sum_probs=66.7

Q ss_pred             CCCcch-hcCcCCCCChHHHHHHHHHHHHh---cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEY-RHRESGRYSGGNKRKLSTAMALI---GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~-~~~~~~~lS~G~~qr~~ia~~l~---~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+... .++++.+|||||+||+++|++++   .+|+++||||||+|||+..++.+.+++.+++++|.|||++||+
T Consensus       796 vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHd  871 (1809)
T PRK00635        796 LGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHN  871 (1809)
T ss_pred             cCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            466654 68999999999999999999998   6999999999999999999999999999998789999999996

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.82  E-value=2.5e-20  Score=125.79  Aligned_cols=67  Identities=30%  Similarity=0.555  Sum_probs=63.3

Q ss_pred             hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      -.+.++.+||||+|||+.||++|..+|+++||||||.|+|.-++.+|+.++++++++|.+||++|.+
T Consensus       394 s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSE  460 (500)
T COG1129         394 SPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSE  460 (500)
T ss_pred             CccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4557899999999999999999999999999999999999999999999999999999999999864

>KOG0055|consensus

Probab=99.82  E-value=2.5e-20  Score=134.34  Aligned_cols=66  Identities=27%  Similarity=0.486  Sum_probs=60.0

Q ss_pred             hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ..-.+..+||||||||+|||||++++|+++||||.|+.||..+.+.+.+.|.+.+ +|+|+|++.|.
T Consensus      1119 ~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHR 1184 (1228)
T KOG0055|consen 1119 RVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHR 1184 (1228)
T ss_pred             ccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecc
Confidence            3444567899999999999999999999999999999999999999999998864 69999999995

>KOG0058|consensus

Probab=99.82  E-value=2.6e-20  Score=128.96  Aligned_cols=63  Identities=30%  Similarity=0.578  Sum_probs=58.2

Q ss_pred             CcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            9 RESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         9 ~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      .+..+||||||||++|||||+++|+++||||.|+.||..+...+.+.+.+..+ ++|||+|.|.
T Consensus       600 EkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHR  662 (716)
T KOG0058|consen  600 EKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHR  662 (716)
T ss_pred             CccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehh
Confidence            45568999999999999999999999999999999999999999999988764 6999999994

>PLN03232 ABC transporter C family member; Provisional

Probab=99.82  E-value=6.5e-20  Score=135.16  Aligned_cols=69  Identities=23%  Similarity=0.314  Sum_probs=60.9

Q ss_pred             CcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         3 l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ++........+||||||||++||||++++|+++||||||++||+.+.+.+.+.|++.. +++|+|+|+|+
T Consensus      1361 Ldt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHR 1429 (1495)
T PLN03232       1361 LDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHR 1429 (1495)
T ss_pred             CCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCC
Confidence            3334445567899999999999999999999999999999999999999999998864 48999999995

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.82  E-value=1e-19  Score=129.70  Aligned_cols=72  Identities=28%  Similarity=0.437  Sum_probs=65.6

Q ss_pred             CCCcc-hhcCcCCCCChHHHHHHHHHHHHhc---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTE-YRHRESGRYSGGNKRKLSTAMALIG---DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~-~~~~~~~~lS~G~~qr~~ia~~l~~---~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +||.. ..++++.+|||||+||+++|++|+.   +|+++||||||+|||+..++.+.+.+.++.+.|.|||+++|+
T Consensus       815 ~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~  890 (924)
T TIGR00630       815 VGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHN  890 (924)
T ss_pred             cCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            35643 4688999999999999999999997   599999999999999999999999999998779999999996

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=9.2e-20  Score=110.83  Aligned_cols=72  Identities=28%  Similarity=0.452  Sum_probs=68.4

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ||+....|.++.+||.|||+|+++||..++.++++|||||+++||......+-.++......|..|+.+||.
T Consensus       118 vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq  189 (209)
T COG4133         118 VGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQ  189 (209)
T ss_pred             cCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCC
Confidence            578889999999999999999999999999999999999999999999999999999988889999999995

>PLN03140 ABC transporter G family member; Provisional

Probab=99.81  E-value=3e-20  Score=136.79  Aligned_cols=72  Identities=24%  Similarity=0.453  Sum_probs=64.6

Q ss_pred             CCCcchh-----cCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858            1 MGLTEYR-----HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~-----~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~   72 (72)
                      +||++..     ++.++.+|||||||++||++++.+|+++++||||+|||+.++..+.+.++++++ .|.|+|+++|+
T Consensus       319 lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hq  396 (1470)
T PLN03140        319 LGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQ  396 (1470)
T ss_pred             cCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence            3565544     556789999999999999999999999999999999999999999999999976 48999999995

>PLN03130 ABC transporter C family member; Provisional

Probab=99.81  E-value=1.4e-19  Score=134.12  Aligned_cols=69  Identities=23%  Similarity=0.321  Sum_probs=61.1

Q ss_pred             CcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         3 l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ++........+||||||||++||||++++|+++||||||+++|..+.+.+.+.|++.. +++|+|+|+|+
T Consensus      1364 Ldt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHR 1432 (1622)
T PLN03130       1364 LDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHR 1432 (1622)
T ss_pred             cCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCC
Confidence            3334444567899999999999999999999999999999999999999999999864 48999999995

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.80  E-value=1.9e-19  Score=132.92  Aligned_cols=68  Identities=19%  Similarity=0.246  Sum_probs=60.1

Q ss_pred             cchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            4 TEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         4 ~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +........+||||||||+++|||++++|+++||||||+++|..+.+.+.+.|++.. +++|+|+|+|+
T Consensus      1412 dt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHR 1479 (1522)
T TIGR00957      1412 DHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHR 1479 (1522)
T ss_pred             CceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecC
Confidence            333344557899999999999999999999999999999999999999999998754 48999999995

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.80  E-value=4.9e-20  Score=113.31  Aligned_cols=72  Identities=28%  Similarity=0.472  Sum_probs=68.5

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +++++..+++..+||||||||.-+|+.++++.+.++||||.++||..-...++++++++.++ |+||+++-||
T Consensus       123 l~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHD  195 (252)
T COG4604         123 LHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHD  195 (252)
T ss_pred             hcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEec
Confidence            46778899999999999999999999999999999999999999999999999999999877 9999999997

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.80  E-value=1.6e-19  Score=108.92  Aligned_cols=68  Identities=19%  Similarity=0.328  Sum_probs=63.7

Q ss_pred             chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEEecC
Q psy858            5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHR   72 (72)
Q Consensus         5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~-~~g~til~~~h~   72 (72)
                      ...++++.+|||||+||++++|.|.-.|++++|||||+.||+..++.+-++|..+. .+.++++.+|||
T Consensus       125 ~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd  193 (223)
T COG4619         125 SILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHD  193 (223)
T ss_pred             hhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecC
Confidence            35678899999999999999999999999999999999999999999999999986 568999999997

>PTZ00243 ABC transporter; Provisional

Probab=99.80  E-value=2.6e-19  Score=132.42  Aligned_cols=70  Identities=26%  Similarity=0.315  Sum_probs=59.1

Q ss_pred             CcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         3 l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ++...++++.+||||||||+++|||++++|+++||||||++||+...+.+.+.+......|+|+|++||+
T Consensus       772 ~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~  841 (1560)
T PTZ00243        772 LETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQ  841 (1560)
T ss_pred             chHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCC
Confidence            4445567889999999999999999999999999999999999999888876432222358999999996

>PLN03232 ABC transporter C family member; Provisional

Probab=99.80  E-value=2.9e-19  Score=131.77  Aligned_cols=63  Identities=24%  Similarity=0.448  Sum_probs=54.8

Q ss_pred             CcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCceEEEEecC
Q psy858            9 RESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAV-LSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         9 ~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~-l~~~~~~g~til~~~h~   72 (72)
                      ....+||||||||+++|||++++|+++||||||++||+...+.+.+. +... ..++|+|++||+
T Consensus       736 e~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~  799 (1495)
T PLN03232        736 ERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQ  799 (1495)
T ss_pred             CCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh-hcCCEEEEEECC
Confidence            34567999999999999999999999999999999999999988665 4443 358999999995

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.80  E-value=3e-19  Score=131.85  Aligned_cols=66  Identities=21%  Similarity=0.341  Sum_probs=59.1

Q ss_pred             hcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH--HhCCceEEEEecC
Q psy858            7 RHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI--QKTGQSIVLTSHR   72 (72)
Q Consensus         7 ~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~--~~~g~til~~~h~   72 (72)
                      ..++..+||||||||+++|||++++|++++|||||++||+...+.+.+.+...  ...++|+|++||+
T Consensus       754 ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~  821 (1522)
T TIGR00957       754 IGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHG  821 (1522)
T ss_pred             ecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCC
Confidence            45667899999999999999999999999999999999999999999988653  2347999999996

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.79  E-value=6.3e-19  Score=130.02  Aligned_cols=63  Identities=24%  Similarity=0.454  Sum_probs=57.7

Q ss_pred             CcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            9 RESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         9 ~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ....+||||||||+++|||++++|+++||||||+++|..+.+.+.+.|++.. .++|||+++|+
T Consensus      1349 e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHR 1411 (1490)
T TIGR01271      1349 DGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHR 1411 (1490)
T ss_pred             cCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecC
Confidence            3445799999999999999999999999999999999999999999998854 47999999995

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.79  E-value=7.8e-19  Score=129.53  Aligned_cols=64  Identities=22%  Similarity=0.430  Sum_probs=57.5

Q ss_pred             cCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCceEEEEecC
Q psy858            8 HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAV-LSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         8 ~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~-l~~~~~~g~til~~~h~   72 (72)
                      ..++.+||||||||+++|||++++|+++||||||++||+..++.+.+. +..+. +|+|+|++||+
T Consensus       543 g~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~-~~~tvilvtH~  607 (1490)
T TIGR01271       543 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM-SNKTRILVTSK  607 (1490)
T ss_pred             cCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCC
Confidence            345789999999999999999999999999999999999999999975 55554 48999999996

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PTZ00243 ABC transporter; Provisional

Probab=99.78  E-value=7.3e-19  Score=130.05  Aligned_cols=63  Identities=22%  Similarity=0.433  Sum_probs=57.4

Q ss_pred             CcCCCCChHHHHHHHHHHHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            9 RESGRYSGGNKRKLSTAMALIGD-PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         9 ~~~~~lS~G~~qr~~ia~~l~~~-p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ....+||||||||++||||++++ |+++||||||++||+.+.+.+.+.|++.. .++|+|+|+|+
T Consensus      1441 e~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHR 1504 (1560)
T PTZ00243       1441 EGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHR 1504 (1560)
T ss_pred             CCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEecc
Confidence            44578999999999999999995 89999999999999999999999998754 47999999995

>PLN03130 ABC transporter C family member; Provisional

Probab=99.78  E-value=8.3e-19  Score=130.08  Aligned_cols=64  Identities=22%  Similarity=0.405  Sum_probs=55.3

Q ss_pred             cCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCceEEEEecC
Q psy858            8 HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWA-VLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         8 ~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~-~l~~~~~~g~til~~~h~   72 (72)
                      .....+||||||||+++|||++++|+++||||||++||+...+.+.+ .+.... .++|+|++||+
T Consensus       735 Ge~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~  799 (1622)
T PLN03130        735 GERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQ  799 (1622)
T ss_pred             cCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECC
Confidence            34566899999999999999999999999999999999999888764 455443 58999999995

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.78  E-value=6.6e-19  Score=120.02  Aligned_cols=65  Identities=35%  Similarity=0.478  Sum_probs=59.9

Q ss_pred             chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +...+++..||||||.|+.+|+.+..+|.++||||||+.||..+.+.+.+.|..+   ..|||+||||
T Consensus       431 ~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHD  495 (530)
T COG0488         431 EDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHD  495 (530)
T ss_pred             HHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCC
Confidence            3457899999999999999999999999999999999999999999999998764   4599999997

>KOG0057|consensus

Probab=99.78  E-value=5.7e-19  Score=119.82  Aligned_cols=65  Identities=28%  Similarity=0.542  Sum_probs=59.1

Q ss_pred             hcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            7 RHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         7 ~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ..++...||||||||++++||++.+|+++++||||+.||..+.+.+.+.+.+. ..++|+|++.|+
T Consensus       481 VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~  545 (591)
T KOG0057|consen  481 VGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHR  545 (591)
T ss_pred             HhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEec
Confidence            34456779999999999999999999999999999999999999999999883 458999999996

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=99.78  E-value=2e-18  Score=104.01  Aligned_cols=59  Identities=24%  Similarity=0.452  Sum_probs=55.6

Q ss_pred             CChHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           14 YSGGNKRKLSTAMALI----GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        14 lS~G~~qr~~ia~~l~----~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ||+||+||++++++++    .+|+++++|||++++|+..++.+.+.+.++.+.|.++|++||+
T Consensus        95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~  157 (178)
T cd03239          95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLK  157 (178)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence            9999999999999986    6899999999999999999999999999987668999999996

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.77  E-value=2.4e-18  Score=116.26  Aligned_cols=62  Identities=37%  Similarity=0.603  Sum_probs=59.4

Q ss_pred             CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           11 SGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        11 ~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ...||||||||+++|||+..+|.+++||||-++||......+.+.|...+++|.|+++++|.
T Consensus       470 G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHR  531 (580)
T COG4618         470 GATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHR  531 (580)
T ss_pred             CCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecC
Confidence            45799999999999999999999999999999999999999999999999899999999995

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.77  E-value=7.4e-19  Score=104.77  Aligned_cols=71  Identities=27%  Similarity=0.432  Sum_probs=65.4

Q ss_pred             CCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HhCCceEEEEecC
Q psy858            2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSHR   72 (72)
Q Consensus         2 ~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~-~~~g~til~~~h~   72 (72)
                      |++...++.|.++|||||.|+++-|+++..|+.++|||||+.||..-+.++.++.-.- ++.|..++++|||
T Consensus       123 gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD  194 (213)
T COG4136         123 GLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHD  194 (213)
T ss_pred             ccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecc
Confidence            6778889999999999999999999999999999999999999999999999987654 4459999999997

>KOG0062|consensus

Probab=99.77  E-value=1.4e-18  Score=117.37  Aligned_cols=65  Identities=31%  Similarity=0.430  Sum_probs=59.3

Q ss_pred             chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +...+++++||||+|-|+++|||+..+|++++|||||+.||..+...+-+.|...   ..|+|+||||
T Consensus       190 emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~---~~T~liVSHD  254 (582)
T KOG0062|consen  190 EMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW---KITSLIVSHD  254 (582)
T ss_pred             HHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC---CceEEEEecc
Confidence            4667789999999999999999999999999999999999999999888887653   4799999997

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.76  E-value=2.9e-18  Score=105.72  Aligned_cols=67  Identities=19%  Similarity=0.385  Sum_probs=57.9

Q ss_pred             hhcCcCCCCChHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C-ceEEEEecC
Q psy858            6 YRHRESGRYSGGNKRKLSTAMAL----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-G-QSIVLTSHR   72 (72)
Q Consensus         6 ~~~~~~~~lS~G~~qr~~ia~~l----~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g-~til~~~h~   72 (72)
                      ..+..+.+||+||||++.++.++    +.+|+++++||||++||+..+..+.+.+.+..++ | .+++++||+
T Consensus       119 ~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~  191 (213)
T cd03277         119 LQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPK  191 (213)
T ss_pred             ccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchh
Confidence            45667889999999998877554    5899999999999999999999999999998765 5 579999985

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.76  E-value=1.7e-18  Score=107.54  Aligned_cols=72  Identities=26%  Similarity=0.462  Sum_probs=67.8

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+++..+.++.-|||||||-++++.|..+.|++++|||.|++|||...+.+++...++.++ +.|.+||||+
T Consensus       136 lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHn  208 (263)
T COG1101         136 LGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHN  208 (263)
T ss_pred             cchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEecc
Confidence            36788899999999999999999999999999999999999999999999999999998765 8999999996

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.76  E-value=9.4e-19  Score=107.52  Aligned_cols=70  Identities=31%  Similarity=0.493  Sum_probs=66.3

Q ss_pred             CCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         2 ~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      |+.+.++..+..||.|||||+.|++.++++|+++++|||++|+.....+...++++.++. .++|+++.||
T Consensus       136 gL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHD  205 (249)
T COG4674         136 GLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHD  205 (249)
T ss_pred             ccchhhhhhhhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEecc
Confidence            677888999999999999999999999999999999999999999999999999999864 7999999997

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=4.5e-18  Score=106.02  Aligned_cols=71  Identities=28%  Similarity=0.514  Sum_probs=64.9

Q ss_pred             CCcc-hhcCcCC-CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            2 GLTE-YRHRESG-RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         2 ~l~~-~~~~~~~-~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ++++ +.++++. .+|||+|||..|+++++.+|+++|||||-||||..+-+.+.+.+..++++|.+++++||.
T Consensus       131 ~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy  203 (251)
T COG0396         131 GLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHY  203 (251)
T ss_pred             CCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecH
Confidence            4443 6777766 599999999999999999999999999999999999999999999999889999999994

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.76  E-value=2e-18  Score=115.98  Aligned_cols=72  Identities=28%  Similarity=0.509  Sum_probs=68.9

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ++|++..++.+.+||||+-||++||.++.++.+++++|||++.||...+-.....++++.+.+++|+++.||
T Consensus       201 l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHD  272 (591)
T COG1245         201 LGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHD  272 (591)
T ss_pred             hcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEech
Confidence            467888999999999999999999999999999999999999999999999999999998879999999997

>TIGR00618 sbcc exonuclease SbcC

Probab=99.75  E-value=7e-18  Score=121.40  Aligned_cols=68  Identities=28%  Similarity=0.260  Sum_probs=62.7

Q ss_pred             chhcCcCCCCChHHHHHHHHHHHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            5 EYRHRESGRYSGGNKRKLSTAMALIG----------DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         5 ~~~~~~~~~lS~G~~qr~~ia~~l~~----------~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ...++++.+|||||++++++|++++.          +|+++|+||||+|||+.+...+.+.|..+...|.+|++|||+
T Consensus       942 ~~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~ 1019 (1042)
T TIGR00618       942 TGSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHV 1019 (1042)
T ss_pred             CCCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCc
Confidence            45567889999999999999999985          799999999999999999999999999987779999999995

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.73  E-value=1e-17  Score=112.54  Aligned_cols=72  Identities=24%  Similarity=0.385  Sum_probs=67.6

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      ++++...++++..||||+.||++||.+|.++.++++||||++.||...+-.+...|+...++ ++|.+++.||
T Consensus       443 l~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHD  515 (591)
T COG1245         443 LNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHD  515 (591)
T ss_pred             cchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecc
Confidence            45678889999999999999999999999999999999999999999999999999998764 8999999997

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.73  E-value=1.6e-17  Score=103.04  Aligned_cols=71  Identities=27%  Similarity=0.446  Sum_probs=63.6

Q ss_pred             CCcchhcCcCCCCChHHHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            2 GLTEYRHRESGRYSGGNKRKLSTAMALIG------DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         2 ~l~~~~~~~~~~lS~G~~qr~~ia~~l~~------~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ++.+++.+...+|||||||||.+||.|++      ++++++|||||+.||..-+...+.+.+++.++|..|+.|-||
T Consensus       124 d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHD  200 (259)
T COG4559         124 DLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHD  200 (259)
T ss_pred             ChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence            44567777888999999999999999864      446889999999999999999999999999999999999997

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=99.73  E-value=2.5e-17  Score=118.79  Aligned_cols=66  Identities=27%  Similarity=0.327  Sum_probs=62.0

Q ss_pred             hcCcCCCCChHHHHHHHHHHHHhc--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            7 RHRESGRYSGGNKRKLSTAMALIG--------DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         7 ~~~~~~~lS~G~~qr~~ia~~l~~--------~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      .++++.+|||||+++++++++|+.        +|+++|+||||++||+.+.+.+++.|..+.+.|++|++|||.
T Consensus       943 ~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~ 1016 (1047)
T PRK10246        943 AVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHV 1016 (1047)
T ss_pred             CCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecH
Confidence            457899999999999999999995        899999999999999999999999999998789999999994

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=99.72  E-value=4.1e-17  Score=96.71  Aligned_cols=60  Identities=28%  Similarity=0.417  Sum_probs=55.6

Q ss_pred             CCChHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           13 RYSGGNKRKLSTAMALIG----DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        13 ~lS~G~~qr~~ia~~l~~----~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ++|+||++++++++++..    +|+++++|||++|+|+..+..+.+.+.++..++.+++++||+
T Consensus        77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~  140 (162)
T cd03227          77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHL  140 (162)
T ss_pred             eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence            599999999999999987    789999999999999999999999998876558899999996

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=99.72  E-value=2.5e-17  Score=104.58  Aligned_cols=62  Identities=19%  Similarity=0.281  Sum_probs=55.3

Q ss_pred             cCCCCChHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           10 ESGRYSGGNKRKLSTAMALIG----DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        10 ~~~~lS~G~~qr~~ia~~l~~----~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ...+||+||+||+++|++++.    +|+++++|||+++||+..+..+.+.+.++.+ +.++|++||+
T Consensus       167 ~~~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~  232 (276)
T cd03241         167 LAKIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHL  232 (276)
T ss_pred             hhhhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEech
Confidence            344699999999999987654    9999999999999999999999999998754 7899999996

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.72  E-value=9.7e-18  Score=101.59  Aligned_cols=64  Identities=27%  Similarity=0.508  Sum_probs=60.0

Q ss_pred             CcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            9 RESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         9 ~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      -.|.++|||++||+.|||+++.+-++++|||||++||...++.+.++|.+.+..|.+++=+-||
T Consensus       148 LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHD  211 (235)
T COG4778         148 LAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHD  211 (235)
T ss_pred             CCCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeecc
Confidence            3578999999999999999999999999999999999999999999999987789999988886

>PHA02562 46 endonuclease subunit; Provisional

Probab=99.71  E-value=3.2e-17  Score=111.30  Aligned_cols=63  Identities=22%  Similarity=0.396  Sum_probs=57.2

Q ss_pred             cCcCCCCChHHHHHHHHHHHHh----------cCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            8 HRESGRYSGGNKRKLSTAMALI----------GDPPLVFLDEPT-SGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         8 ~~~~~~lS~G~~qr~~ia~~l~----------~~p~~lllDEP~-~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +..+.+|||||+||+++|++++          .+|+++|||||| ++||+..+..+.+.+..+  .|.+||++||+
T Consensus       463 ~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~  536 (562)
T PHA02562        463 DFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHK  536 (562)
T ss_pred             ccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECc
Confidence            3467899999999999999887          589999999998 789999999999999987  58899999996

>KOG0927|consensus

Probab=99.70  E-value=4.4e-17  Score=110.77  Aligned_cols=67  Identities=30%  Similarity=0.422  Sum_probs=59.7

Q ss_pred             cchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            4 TEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         4 ~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      .+..++.+.+||||++.|+++||+|..+|++++|||||++||..++..+-+.|.++.+  .++++++|+
T Consensus       212 ~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~--~~lVi~sh~  278 (614)
T KOG0927|consen  212 SEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR--IILVIVSHS  278 (614)
T ss_pred             HhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC--ceEEEEecc
Confidence            3567788999999999999999999999999999999999999999999998877532  289999985

>PRK03918 chromosome segregation protein; Provisional

Probab=99.69  E-value=9.5e-17  Score=113.40  Aligned_cols=66  Identities=29%  Similarity=0.489  Sum_probs=58.0

Q ss_pred             hcCcCCCCChHHHHH------HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            7 RHRESGRYSGGNKRK------LSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         7 ~~~~~~~lS~G~~qr------~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      .+.++..|||||+++      ++++++++.+|+++||||||++||+..+..+.+++..+...+.+||++||+
T Consensus       782 ~~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~  853 (880)
T PRK03918        782 KERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHD  853 (880)
T ss_pred             CcCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence            356788999999994      555667889999999999999999999999999999876667899999996

>TIGR00634 recN DNA repair protein RecN

Probab=99.69  E-value=1.2e-16  Score=109.51  Aligned_cols=60  Identities=18%  Similarity=0.277  Sum_probs=55.8

Q ss_pred             CCCChHHHHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           12 GRYSGGNKRKLSTAMALIGD----PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        12 ~~lS~G~~qr~~ia~~l~~~----p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ..+||||+||+++|++++..    |+++|||||++|+|+..+..+.+.+.++.+ +.+||++||+
T Consensus       439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~  502 (563)
T TIGR00634       439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHL  502 (563)
T ss_pred             hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEECh
Confidence            57899999999999999885    699999999999999999999999999864 8999999995

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=99.68  E-value=1.5e-16  Score=96.93  Aligned_cols=68  Identities=25%  Similarity=0.333  Sum_probs=58.6

Q ss_pred             cchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhCCceEEEEecC
Q psy858            4 TEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLW-AVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         4 ~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~-~~l~~~~~~g~til~~~h~   72 (72)
                      ++..+....++|+||+|+..+++++ .+|+++++|||++|+|+..+..+. .+++.+.+.|.+++++||+
T Consensus        82 ~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~  150 (200)
T cd03280          82 EQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHY  150 (200)
T ss_pred             hhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCH
Confidence            3455667789999999999999874 899999999999999999999986 4677776668999999995

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>TIGR00606 rad50 rad50

Probab=99.67  E-value=3.2e-16  Score=114.89  Aligned_cols=63  Identities=29%  Similarity=0.379  Sum_probs=57.3

Q ss_pred             cCCCCChHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCceEEEEecC
Q psy858           10 ESGRYSGGNKR------KLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-----TGQSIVLTSHR   72 (72)
Q Consensus        10 ~~~~lS~G~~q------r~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-----~g~til~~~h~   72 (72)
                      ....|||||+|      |+++|++++.+|++++|||||+|||+.....+...+..+..     .|.+||++||+
T Consensus      1196 ~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd 1269 (1311)
T TIGR00606      1196 MRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHD 1269 (1311)
T ss_pred             CCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecC
Confidence            45789999999      99999999999999999999999999999999998887632     37899999997

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0927|consensus

Probab=99.66  E-value=1.3e-16  Score=108.53  Aligned_cols=69  Identities=29%  Similarity=0.438  Sum_probs=61.5

Q ss_pred             CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ||++ .....++++||+|||+||.+|+.++..|.+++|||||+|||..+...+.+.|.+.   ..+|+++|||
T Consensus       496 fgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHD  565 (614)
T KOG0927|consen  496 FGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHD  565 (614)
T ss_pred             hCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeech
Confidence            4665 5667789999999999999999999999999999999999999999999998764   3489999997

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.65  E-value=4.1e-16  Score=111.40  Aligned_cols=66  Identities=21%  Similarity=0.368  Sum_probs=59.2

Q ss_pred             hhcCcCCCCChHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            6 YRHRESGRYSGGNKRKLSTAMALI----GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         6 ~~~~~~~~lS~G~~qr~~ia~~l~----~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ..+.++.+|||||+++++++++++    .+|+++|||||+++||+..+..+.+++..+.+ +.+|||+||+
T Consensus      1082 ~~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~ 1151 (1179)
T TIGR02168      1082 KKNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHN 1151 (1179)
T ss_pred             CccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcC
Confidence            356788999999999999999984    67799999999999999999999999998764 5789999996

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>KOG0062|consensus

Probab=99.65  E-value=4e-16  Score=105.70  Aligned_cols=69  Identities=33%  Similarity=0.471  Sum_probs=59.5

Q ss_pred             CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ||++ +.+...+.+||||||-||++|.+...+|-+++|||||+.||..+-..+...|+..   +..|++||||
T Consensus       469 ~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd  538 (582)
T KOG0062|consen  469 FGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHD  538 (582)
T ss_pred             cCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECc
Confidence            4554 3455568899999999999999999999999999999999999999998887664   4589999997

>PRK10869 recombination and repair protein; Provisional

Probab=99.65  E-value=7.6e-16  Score=105.57  Aligned_cols=60  Identities=20%  Similarity=0.361  Sum_probs=55.4

Q ss_pred             CCCChHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           12 GRYSGGNKRKLSTAMALIG----DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        12 ~~lS~G~~qr~~ia~~l~~----~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +.+||||++|+++|++++.    +|+++|||||++|+|......+.+.++++.+ +.+||++||+
T Consensus       429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~  492 (553)
T PRK10869        429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHL  492 (553)
T ss_pred             hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecC
Confidence            3689999999999999997    5899999999999999999999999999864 7899999995

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.64  E-value=7.8e-16  Score=96.49  Aligned_cols=71  Identities=24%  Similarity=0.359  Sum_probs=67.5

Q ss_pred             CCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         2 ~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|.++.++|++++|.||+-|++++.+...+|+++|+||-.+.-|+..++...+.+.++.+++.|++++|||
T Consensus       136 ELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd  206 (249)
T COG1134         136 ELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHD  206 (249)
T ss_pred             HHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence            35678999999999999999999999999999999999999999999999999999997778999999997

>KOG0065|consensus

Probab=99.64  E-value=9.3e-17  Score=116.72  Aligned_cols=72  Identities=33%  Similarity=0.606  Sum_probs=67.3

Q ss_pred             CCCcchhcCcCCC----CChHHHHHHHHHHHHhcCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGR----YSGGNKRKLSTAMALIGDP-PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~----lS~G~~qr~~ia~~l~~~p-~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ++|+++++..++.    ||..||||+.||--|+.+| .+++|||||+|||..+...++++++++++.|.||+.+-|.
T Consensus       913 leL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQ  989 (1391)
T KOG0065|consen  913 LELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQ  989 (1391)
T ss_pred             hCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence            4677888888887    9999999999999999999 7899999999999999999999999999999999999984

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=99.63  E-value=3.9e-16  Score=104.00  Aligned_cols=61  Identities=30%  Similarity=0.623  Sum_probs=56.2

Q ss_pred             CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           11 SGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        11 ~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      .-.||||||||++|||+++.+|++++|||.|+.||..+.+.+...+++.. .|+|.+++.|.
T Consensus       397 glklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahr  457 (497)
T COG5265         397 GLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHR  457 (497)
T ss_pred             eeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeeh
Confidence            34589999999999999999999999999999999999999999998875 58999999884

>KOG0066|consensus

Probab=99.63  E-value=7e-16  Score=104.29  Aligned_cols=69  Identities=29%  Similarity=0.496  Sum_probs=60.3

Q ss_pred             CCCcchhcC-cCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHR-ESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~-~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ||+..++|. .+..|||||+.||++|-.-++.|+++||||||++||..+...+.+.|.++   ...|||+|||
T Consensus       691 fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHD  760 (807)
T KOG0066|consen  691 FGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHD  760 (807)
T ss_pred             hhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecc
Confidence            455555554 57899999999999999999999999999999999999999999999875   3489999997

>PRK01156 chromosome segregation protein; Provisional

Probab=99.60  E-value=6e-15  Score=104.90  Aligned_cols=65  Identities=26%  Similarity=0.368  Sum_probs=55.8

Q ss_pred             cCcCCCCChHHHHHHHH------HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hC-C-ceEEEEecC
Q psy858            8 HRESGRYSGGNKRKLST------AMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KT-G-QSIVLTSHR   72 (72)
Q Consensus         8 ~~~~~~lS~G~~qr~~i------a~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~-~~-g-~til~~~h~   72 (72)
                      ...+..||||+++++++      |++++.+|++++|||||++||+..+..+.+++.... .. | .++|++||+
T Consensus       796 ~~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~  869 (895)
T PRK01156        796 VEGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHH  869 (895)
T ss_pred             cCccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECc
Confidence            34688999999999875      589999999999999999999999999999987643 33 3 489999996

>KOG0054|consensus

Probab=99.59  E-value=3.9e-15  Score=109.19  Aligned_cols=64  Identities=27%  Similarity=0.440  Sum_probs=56.5

Q ss_pred             CcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            9 RESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         9 ~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      .+.-+||||||||+++|||+.++.++++||.|++++|....+++.+-.-.-.-+++|+|++||.
T Consensus       639 ErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHq  702 (1381)
T KOG0054|consen  639 ERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQ  702 (1381)
T ss_pred             CCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCc
Confidence            4567899999999999999999999999999999999999999877665433358999999994

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.59  E-value=3.9e-15  Score=102.56  Aligned_cols=60  Identities=33%  Similarity=0.556  Sum_probs=55.4

Q ss_pred             CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           12 GRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        12 ~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ..||+|||||+++||.++++|++++|||-|++||+.....+++.+++.. .+.|||.|+|.
T Consensus       514 ~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr  573 (604)
T COG4178         514 RVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHR  573 (604)
T ss_pred             hhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccc
Confidence            4699999999999999999999999999999999999999999998743 48999999994

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.58  E-value=6.3e-15  Score=90.44  Aligned_cols=69  Identities=22%  Similarity=0.340  Sum_probs=64.2

Q ss_pred             cchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            4 TEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         4 ~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      .++++-++..||.||||||++|||++.+|+++|.||..++||...+-++.++..++.++ |.+.|+++.+
T Consensus       140 Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~Qh  209 (267)
T COG4167         140 PDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQH  209 (267)
T ss_pred             ccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEech
Confidence            46788899999999999999999999999999999999999999999999999999765 9999999863

>KOG0056|consensus

Probab=99.58  E-value=2.1e-15  Score=102.79  Aligned_cols=61  Identities=26%  Similarity=0.538  Sum_probs=55.6

Q ss_pred             CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           11 SGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        11 ~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      .-.|||||||||+|||++...|.+++|||.|+.||....+.|...+.++++ ++|-|++.|.
T Consensus       672 GLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHR  732 (790)
T KOG0056|consen  672 GLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHR  732 (790)
T ss_pred             ccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeee
Confidence            346999999999999999999999999999999999999999999999876 6777788774

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.58  E-value=2.4e-15  Score=86.15  Aligned_cols=35  Identities=43%  Similarity=0.747  Sum_probs=32.2

Q ss_pred             cCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy858            8 HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTS   42 (72)
Q Consensus         8 ~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~   42 (72)
                      ++++.+||+|||||+++|++++.+|+++||||||+
T Consensus       103 ~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~  137 (137)
T PF00005_consen  103 GQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN  137 (137)
T ss_dssp             TSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred             ccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence            34449999999999999999999999999999996

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.58  E-value=5.5e-16  Score=94.45  Aligned_cols=72  Identities=29%  Similarity=0.525  Sum_probs=64.3

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHh-----cCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALI-----GDP--PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~-----~~p--~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ++++++.++.+.+|||||.|||-+|....     .||  +++++|||.++||...+..+..++..++..|.+|||++||
T Consensus       113 L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HD  191 (248)
T COG4138         113 LALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHD  191 (248)
T ss_pred             hcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccc
Confidence            36778888999999999999999998553     344  5999999999999999999999999999999999999997

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.56  E-value=1.5e-15  Score=94.89  Aligned_cols=67  Identities=27%  Similarity=0.501  Sum_probs=62.6

Q ss_pred             hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      ....|+.+|.-|+.|+|.||.|++..|+++|.||||+.+++.++.+++.++..+.++ |.||++++||
T Consensus       151 IM~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~D  218 (330)
T COG4170         151 IMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHD  218 (330)
T ss_pred             HHHhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEccc
Confidence            455689999999999999999999999999999999999999999999999998764 8999999997

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.55  E-value=2.8e-14  Score=100.65  Aligned_cols=66  Identities=26%  Similarity=0.441  Sum_probs=61.8

Q ss_pred             hcCcCCCCChHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            7 RHRESGRYSGGNKRKLSTAMALIGDP---PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         7 ~~~~~~~lS~G~~qr~~ia~~l~~~p---~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      .-++..+|||||.||+.+|.-|....   -++||||||+||=....+.+.+.|.++...|.|||++.|+
T Consensus       816 LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHN  884 (935)
T COG0178         816 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHN  884 (935)
T ss_pred             cCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence            45678899999999999999998887   7999999999999999999999999999999999999996

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.55  E-value=1.4e-14  Score=103.92  Aligned_cols=65  Identities=17%  Similarity=0.207  Sum_probs=57.9

Q ss_pred             hcCcCCCCChHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            7 RHRESGRYSGGNKRKLSTAMALIG----DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         7 ~~~~~~~lS~G~~qr~~ia~~l~~----~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ..+.+..|||||++++++|++++.    +|++++||||+++||+..+..+.++|..+.. +..+|++||+
T Consensus      1068 ~~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~ 1136 (1164)
T TIGR02169      1068 PVQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLR 1136 (1164)
T ss_pred             CCCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECc
Confidence            345678999999999999999984    7899999999999999999999999988754 5789999995

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=99.53  E-value=4e-14  Score=85.46  Aligned_cols=70  Identities=19%  Similarity=0.210  Sum_probs=52.8

Q ss_pred             CCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhC-CceEEEEecC
Q psy858            2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRL-WAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         2 ~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i-~~~l~~~~~~-g~til~~~h~   72 (72)
                      +.++..++...++|+|++|...+.. .+.+|+++|+|||++|+|+.....+ ..+++.+.+. +.+++++||+
T Consensus        50 ~~~d~~~~~~s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~  121 (185)
T smart00534       50 GASDSLAQGLSTFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHY  121 (185)
T ss_pred             CCCCchhccccHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecH
Confidence            3445566677888888887443333 3459999999999999999987776 5566666664 8899999995

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.53  E-value=2.2e-14  Score=96.71  Aligned_cols=66  Identities=27%  Similarity=0.418  Sum_probs=61.8

Q ss_pred             hcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            7 RHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         7 ~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ...++++||||++||+-+||-+.++|+++|+.+||.|||.-+.+.+.+.|.+.++.|.+|+++|.+
T Consensus       397 ~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~d  462 (501)
T COG3845         397 PDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISED  462 (501)
T ss_pred             CCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehh
Confidence            345688999999999999999999999999999999999999999999999999899999999864

>KOG0054|consensus

Probab=99.51  E-value=8.8e-14  Score=102.25  Aligned_cols=70  Identities=24%  Similarity=0.364  Sum_probs=61.9

Q ss_pred             CCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         2 ~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ||+........++|-||||.+++|||++++.++++|||.|+++|+.+-..|.+.|++-- .++||+.+.|+
T Consensus      1264 ~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHR 1333 (1381)
T KOG0054|consen 1264 GLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHR 1333 (1381)
T ss_pred             CCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeec
Confidence            34445555667899999999999999999999999999999999999999999998843 48999999995

>PRK02224 chromosome segregation protein; Provisional

Probab=99.48  E-value=1.3e-13  Score=97.89  Aligned_cols=63  Identities=30%  Similarity=0.469  Sum_probs=54.6

Q ss_pred             cCCCCChHHHH------HHHHHHHHhcC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCc-eEEEEecC
Q psy858           10 ESGRYSGGNKR------KLSTAMALIGD-----P-PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQ-SIVLTSHR   72 (72)
Q Consensus        10 ~~~~lS~G~~q------r~~ia~~l~~~-----p-~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~-til~~~h~   72 (72)
                      .+..||||+++      |++++++++.+     | +++|+||||+++|+..+..+.++|..+...|. +||++||+
T Consensus       778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~  853 (880)
T PRK02224        778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHD  853 (880)
T ss_pred             ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence            46799999999      88888888863     2 67999999999999999999999998875564 79999996

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=99.48  E-value=2.1e-13  Score=83.15  Aligned_cols=65  Identities=18%  Similarity=0.248  Sum_probs=51.4

Q ss_pred             hcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhCCceEEEEecC
Q psy858            7 RHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLW-AVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         7 ~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~-~~l~~~~~~g~til~~~h~   72 (72)
                      .......++.+++| +..+.+.+.+|+++|+|||++|+|+.....+. .+++.+.+.+.++|++||+
T Consensus        85 i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~  150 (202)
T cd03243          85 ISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHF  150 (202)
T ss_pred             ccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECCh
Confidence            34445667766665 66667888999999999999999999888775 4566666668999999996

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage

Probab=99.46  E-value=1.9e-13  Score=86.61  Aligned_cols=58  Identities=26%  Similarity=0.342  Sum_probs=48.4

Q ss_pred             CCCCChHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858           11 SGRYSGGNKRKLSTAMALI---------GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH   71 (72)
Q Consensus        11 ~~~lS~G~~qr~~ia~~l~---------~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h   71 (72)
                      ...+|+||+|+++++++++         .+|+++++||||++||+..++.+.+.+.++   +.+++.++|
T Consensus       181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~---~q~ii~~~~  247 (270)
T cd03242         181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR---VQTFVTTTD  247 (270)
T ss_pred             HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC---CCEEEEeCC
Confidence            4568999999999999985         799999999999999999999999998764   234444443

When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=99.44  E-value=4.9e-13  Score=82.99  Aligned_cols=61  Identities=23%  Similarity=0.151  Sum_probs=50.4

Q ss_pred             cCCCCChHHHHHHHHHHHH--hcCCCEEEEeCC---CCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858           10 ESGRYSGGNKRKLSTAMAL--IGDPPLVFLDEP---TSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR   72 (72)
Q Consensus        10 ~~~~lS~G~~qr~~ia~~l--~~~p~~lllDEP---~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~   72 (72)
                      ....+|.|++++..+++++  +.+|+++|+|||   |+++|+.+...  .++..+.+ .|.+++++||+
T Consensus        86 ~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~--~il~~l~~~~~~~vlisTH~  152 (222)
T cd03285          86 QLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAW--AIAEYIATQIKCFCLFATHF  152 (222)
T ss_pred             hhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHH--HHHHHHHhcCCCeEEEEech
Confidence            4678999999999999999  899999999999   88899888854  33444444 48899999994

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=99.43  E-value=5.7e-13  Score=81.89  Aligned_cols=67  Identities=15%  Similarity=0.272  Sum_probs=53.7

Q ss_pred             chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhCCceEEEEecC
Q psy858            5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRL-WAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i-~~~l~~~~~~g~til~~~h~   72 (72)
                      +..++...++|.|++|. ..+..++.+|+++++|||++|+|+.....+ +.++..+.+.|.++|++||+
T Consensus        83 d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~  150 (204)
T cd03282          83 DSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHF  150 (204)
T ss_pred             cccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCh
Confidence            34556677899999975 555668899999999999999999776654 55677776679999999995

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR00611 recf recF protein

Probab=99.41  E-value=8.4e-13  Score=86.97  Aligned_cols=58  Identities=28%  Similarity=0.402  Sum_probs=52.8

Q ss_pred             CCCChHHHHHHHHHHHHhc---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           12 GRYSGGNKRKLSTAMALIG---------DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        12 ~~lS~G~~qr~~ia~~l~~---------~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ..+|.||+|++.+|..++.         .|++++||||+++||+..++.+.+.+...   |..+++++|+
T Consensus       274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~  340 (365)
T TIGR00611       274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAIS  340 (365)
T ss_pred             HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecC
Confidence            3689999999999999999         99999999999999999999999998653   6789999985

All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=99.40  E-value=1e-12  Score=97.05  Aligned_cols=64  Identities=33%  Similarity=0.434  Sum_probs=54.3

Q ss_pred             hhcCcCCCCChHHHHHHH----HHHH--------HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            6 YRHRESGRYSGGNKRKLS----TAMA--------LIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         6 ~~~~~~~~lS~G~~qr~~----ia~~--------l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ..++.+..|||||||++.    +|++        +..+|++++|||||+|+|+.....+++++.++   |.++||+|+.
T Consensus      1240 ~~~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~ 1315 (1353)
T TIGR02680      1240 PLTHRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSER 1315 (1353)
T ss_pred             chhccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccc
Confidence            345567899999999996    4544        55799999999999999999999999999876   7889999874

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=99.40  E-value=1.7e-12  Score=92.95  Aligned_cols=64  Identities=33%  Similarity=0.482  Sum_probs=56.2

Q ss_pred             CcCCCCChHHHHHHHHHH------HHhcC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            9 RESGRYSGGNKRKLSTAM------ALIGD--PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         9 ~~~~~lS~G~~qr~~ia~------~l~~~--p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +++.+||||++-.+++|.      .+..+  -+++++||||..||+...+.+.+++..+...+..|++|||+
T Consensus       811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~  882 (908)
T COG0419         811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHV  882 (908)
T ss_pred             cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCh
Confidence            578899999998666555      44566  69999999999999999999999999998779999999996

>KOG0066|consensus

Probab=99.39  E-value=1.8e-13  Score=92.77  Aligned_cols=65  Identities=32%  Similarity=0.486  Sum_probs=57.5

Q ss_pred             chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +..+++...+|||+|-|+++||||...|-+++|||||+.||..+.-.+-..+...+   .|.+++|||
T Consensus       404 EMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHD  468 (807)
T KOG0066|consen  404 EMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHD  468 (807)
T ss_pred             hHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEecc
Confidence            46678888999999999999999999999999999999999998877777766543   599999997

>PRK00064 recF recombination protein F; Reviewed

Probab=99.37  E-value=1.9e-12  Score=85.14  Aligned_cols=60  Identities=27%  Similarity=0.424  Sum_probs=51.9

Q ss_pred             cCCCCChHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           10 ESGRYSGGNKRKLSTAMALI---------GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        10 ~~~~lS~G~~qr~~ia~~l~---------~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ....+|.||+|++.+|+.++         .+|+++++|||+++||+..++.+.+.+.++   +..+++++|+
T Consensus       270 ~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~  338 (361)
T PRK00064        270 AADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTD  338 (361)
T ss_pred             HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCC
Confidence            45679999999999999885         789999999999999999999999888653   4578888874

>KOG0060|consensus

Probab=99.37  E-value=1.9e-12  Score=89.05  Aligned_cols=58  Identities=26%  Similarity=0.347  Sum_probs=53.8

Q ss_pred             CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           12 GRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        12 ~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ..||+||+||+++||.+.++|++.||||-|+++|......+...+++   .|.|+|-|+|.
T Consensus       569 dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~---~giT~iSVgHR  626 (659)
T KOG0060|consen  569 DVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE---MGITFISVGHR  626 (659)
T ss_pred             hhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH---cCCeEEEeccH
Confidence            46999999999999999999999999999999999999999988765   58999999994

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.36  E-value=4.7e-12  Score=89.69  Aligned_cols=66  Identities=26%  Similarity=0.488  Sum_probs=61.5

Q ss_pred             hcCcCCCCChHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            7 RHRESGRYSGGNKRKLSTAMALIGDP--PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         7 ~~~~~~~lS~G~~qr~~ia~~l~~~p--~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      .++...+|||||.||+.+|.-+-++=  =+++||||+.||=+...+++.+.++.++..|-|+|+|.||
T Consensus       475 L~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHD  542 (935)
T COG0178         475 LSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHD  542 (935)
T ss_pred             ccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecC
Confidence            56778999999999999999998884  3899999999999999999999999999889999999997

>KOG2355|consensus

Probab=99.34  E-value=1.3e-12  Score=81.42  Aligned_cols=63  Identities=27%  Similarity=0.441  Sum_probs=58.7

Q ss_pred             CcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEec
Q psy858            9 RESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSH   71 (72)
Q Consensus         9 ~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h   71 (72)
                      .+....|-|||+|+.|++.|+..-++++|||-|..||..++..+.+++++-.++ |.||++.||
T Consensus       143 WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATH  206 (291)
T KOG2355|consen  143 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATH  206 (291)
T ss_pred             EEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEee
Confidence            345678999999999999999999999999999999999999999999998764 999999999

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=99.34  E-value=3.7e-12  Score=90.38  Aligned_cols=66  Identities=24%  Similarity=0.326  Sum_probs=56.7

Q ss_pred             hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCceEEEEecC
Q psy858            6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWA-VLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~-~l~~~~~~g~til~~~h~   72 (72)
                      ...+...++|+||++++.+++++ .+|.++|+|||++|+|+.....+.. ++..+.+.|.++|++||+
T Consensus       383 si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~  449 (782)
T PRK00409        383 SIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHY  449 (782)
T ss_pred             chhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCh
Confidence            34456778999999999999988 8899999999999999999998864 566666678999999995

>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A

Probab=99.31  E-value=2.2e-11  Score=73.20  Aligned_cols=64  Identities=25%  Similarity=0.453  Sum_probs=53.2

Q ss_pred             CcCCCCChHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            9 RESGRYSGGNKRKLSTAMALIGDP---PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         9 ~~~~~lS~G~~qr~~ia~~l~~~p---~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      -+...+|.|+++.+.++..+...+   .++++|||-++|.|..++.+.+++.+..+.+.-+|++||+
T Consensus       232 ~~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHS  298 (303)
T PF13304_consen  232 IPLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHS  298 (303)
T ss_dssp             GGGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-
T ss_pred             EeeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCcc
Confidence            356678999999999888887777   8999999999999999999999998776557899999995

>TIGR01069 mutS2 MutS2 family protein

Probab=99.28  E-value=1.4e-11  Score=87.36  Aligned_cols=64  Identities=23%  Similarity=0.357  Sum_probs=55.7

Q ss_pred             cCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhCCceEEEEecC
Q psy858            8 HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRL-WAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         8 ~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i-~~~l~~~~~~g~til~~~h~   72 (72)
                      .....++|+|++++..+++.+ .+|.++|+|||++|+|+.....+ ..++..+.+.|.++|++||+
T Consensus       380 ~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~  444 (771)
T TIGR01069       380 EQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHY  444 (771)
T ss_pred             hhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCh
Confidence            345678999999999988876 78999999999999999999998 46777777679999999995

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=99.28  E-value=3.8e-11  Score=73.48  Aligned_cols=56  Identities=23%  Similarity=0.351  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhCCceEEEEecC
Q psy858           17 GNKRKLSTAMALIG--DPPLVFLDEPTSGVDPISRHRLW-AVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        17 G~~qr~~ia~~l~~--~p~~lllDEP~~gld~~~~~~i~-~~l~~~~~~g~til~~~h~   72 (72)
                      .+.+++.-+...+.  +|+++|+|||++|+|+..+..+. .++..+.+.|.++|++||+
T Consensus        89 ~e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~  147 (199)
T cd03283          89 AELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHD  147 (199)
T ss_pred             HHHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCc
Confidence            34466666666666  99999999999999999998764 5777777678999999996

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.26  E-value=2.3e-11  Score=81.47  Aligned_cols=62  Identities=29%  Similarity=0.490  Sum_probs=56.7

Q ss_pred             CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEEecC
Q psy858           11 SGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHR   72 (72)
Q Consensus        11 ~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~-~~g~til~~~h~   72 (72)
                      +-.||.|||||+++..|+.-+.+++++||=.+..||..++.+...+.-.. +.|+||+.+|||
T Consensus       446 ~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHD  508 (546)
T COG4615         446 NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHD  508 (546)
T ss_pred             ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecC
Confidence            34689999999999999999999999999999999999999998887654 569999999997

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=99.23  E-value=7.7e-11  Score=72.25  Aligned_cols=60  Identities=30%  Similarity=0.505  Sum_probs=47.0

Q ss_pred             CCCChHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           12 GRYSGGNKRKLSTAMAL----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        12 ~~lS~G~~qr~~ia~~l----~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ..+|||||..+++|.-+    ..+.++++||||.++||...+..+.++|.++.+ +.-+|++||+
T Consensus       135 ~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~-~~Q~ii~Th~  198 (220)
T PF02463_consen  135 EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK-QSQFIITTHN  198 (220)
T ss_dssp             TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-TSEEEEE-S-
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence            37999999999998754    356689999999999999999999999998754 5779999995

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=99.22  E-value=8e-11  Score=72.68  Aligned_cols=56  Identities=23%  Similarity=0.310  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH-HHHHHHHHHhC---CceEEEEecC
Q psy858           17 GNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHR-LWAVLSQIQKT---GQSIVLTSHR   72 (72)
Q Consensus        17 G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~-i~~~l~~~~~~---g~til~~~h~   72 (72)
                      .+.|+++++++++.+|+++|+|||++|+|+..... +..+++.+.+.   +.++|++||+
T Consensus        94 ~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~  153 (213)
T cd03281          94 IDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHF  153 (213)
T ss_pred             HHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcCh
Confidence            45699999999999999999999999999976554 46688887654   3589999996

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>KOG0063|consensus

Probab=99.20  E-value=2e-11  Score=82.34  Aligned_cols=70  Identities=23%  Similarity=0.390  Sum_probs=64.9

Q ss_pred             CcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         3 l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      |+...++.+.+||||+-||.++|.+-++..+++++|||.+.||...+..-...|+.+.....=|+++.||
T Consensus       203 L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHD  272 (592)
T KOG0063|consen  203 LNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHD  272 (592)
T ss_pred             HhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEee
Confidence            4566778899999999999999999999999999999999999999999999999988778889999997

>KOG0063|consensus

Probab=99.20  E-value=9.8e-12  Score=83.80  Aligned_cols=70  Identities=19%  Similarity=0.300  Sum_probs=62.2

Q ss_pred             CcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEEecC
Q psy858            3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHR   72 (72)
Q Consensus         3 l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~-~~g~til~~~h~   72 (72)
                      +++..++.+.+||||+.||++++.++-...++++.|||.+.||...+......+++.. ....|-+++.||
T Consensus       446 ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhd  516 (592)
T KOG0063|consen  446 IENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHD  516 (592)
T ss_pred             HHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhH
Confidence            4567788999999999999999999999999999999999999999998888887753 457888888886

>KOG0065|consensus

Probab=99.20  E-value=9.6e-12  Score=91.22  Aligned_cols=71  Identities=24%  Similarity=0.454  Sum_probs=61.7

Q ss_pred             CCCcchhcCcC-----CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEec
Q psy858            1 MGLTEYRHRES-----GRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSH   71 (72)
Q Consensus         1 ~~l~~~~~~~~-----~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h   71 (72)
                      +|+++++|..+     +-.|||||||++++-+++.+++++++||+|.|||..+.-++.+.++++... +.|++++-+
T Consensus       243 lGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~  319 (1391)
T KOG0065|consen  243 LGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSIL  319 (1391)
T ss_pred             hCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEec
Confidence            46776666655     458999999999999999999999999999999999999999999998764 778777654

>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A

Probab=99.13  E-value=2.2e-10  Score=62.48  Aligned_cols=51  Identities=39%  Similarity=0.513  Sum_probs=38.7

Q ss_pred             cCcCCCCChHHH-HHHHHHHH------Hhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy858            8 HRESGRYSGGNK-RKLSTAMA------LIG------DPPLVFLDEPTSGVDPISRHRLWAVLSQ   58 (72)
Q Consensus         8 ~~~~~~lS~G~~-qr~~ia~~------l~~------~p~~lllDEP~~gld~~~~~~i~~~l~~   58 (72)
                      .+....+||||+ ..++++.+      +..      .|++++|||||+++|+...+.+.+++++
T Consensus        27 ~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~   90 (90)
T PF13558_consen   27 SRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ   90 (90)
T ss_dssp             EEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred             eccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence            456789999999 44444442      223      3689999999999999999999998864

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=99.11  E-value=3.8e-10  Score=67.22  Aligned_cols=67  Identities=12%  Similarity=0.093  Sum_probs=54.8

Q ss_pred             hhcCcCCCCChHHHH------HHHHHHHHhcCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            6 YRHRESGRYSGGNKR------KLSTAMALIGDPPLVFLDEPTSGVD---PISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         6 ~~~~~~~~lS~G~~q------r~~ia~~l~~~p~~lllDEP~~gld---~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ..+..+..+|+|+++      ..........+|+++++|||++.+|   ...+..+.+++..+++.|.|+++++|+
T Consensus        64 ~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~  139 (187)
T cd01124          64 IVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQ  139 (187)
T ss_pred             EEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEecc
Confidence            445667788999987      4444445667899999999999999   888888888988888789999999984

A related protein is found in archaea.

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=99.03  E-value=6.5e-10  Score=75.06  Aligned_cols=65  Identities=23%  Similarity=0.436  Sum_probs=60.7

Q ss_pred             cCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            8 HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         8 ~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      .+...+||.||+.|..+|.++...|.+++.||-.+.||+.+...+..-+.+++++ |.|.+++||+
T Consensus       502 Rr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThr  567 (593)
T COG2401         502 RRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHR  567 (593)
T ss_pred             hccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecC
Confidence            3467889999999999999999999999999999999999999999999999765 9999999995

>KOG0064|consensus

Probab=99.02  E-value=3.4e-10  Score=77.99  Aligned_cols=58  Identities=28%  Similarity=0.423  Sum_probs=52.7

Q ss_pred             CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           12 GRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        12 ~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      .-||||+|||+++||.+.+.|+..+|||-|++..+.....+++..+.   .|.+.+-+||.
T Consensus       611 d~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~---~gi~llsithr  668 (728)
T KOG0064|consen  611 DVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD---AGISLLSITHR  668 (728)
T ss_pred             hhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh---cCceEEEeecC
Confidence            36999999999999999999999999999999999999988877654   49999999994

>PRK14079 recF recombination protein F; Provisional

Probab=99.01  E-value=1.1e-09  Score=71.80  Aligned_cols=47  Identities=30%  Similarity=0.499  Sum_probs=43.4

Q ss_pred             CCCChHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy858           12 GRYSGGNKRKLSTAMALI---------GDPPLVFLDEPTSGVDPISRHRLWAVLSQ   58 (72)
Q Consensus        12 ~~lS~G~~qr~~ia~~l~---------~~p~~lllDEP~~gld~~~~~~i~~~l~~   58 (72)
                      ..+|+||++++.++..++         .+|+++++|||+++||+..+..+.+.+..
T Consensus       262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~  317 (349)
T PRK14079        262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAAS  317 (349)
T ss_pred             HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhc
Confidence            357999999999999998         89999999999999999999999988854

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=99.01  E-value=8e-10  Score=68.37  Aligned_cols=59  Identities=31%  Similarity=0.490  Sum_probs=40.0

Q ss_pred             CCCChHHHHH----HHHHHHH--hcCCCEEEEeCC---CCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858           12 GRYSGGNKRK----LSTAMAL--IGDPPLVFLDEP---TSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus        12 ~~lS~G~~qr----~~ia~~l--~~~p~~lllDEP---~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      .++|.|+.+.    ..++.++  +.+|+++++|||   |+++|....  ...++..+.+. +.+++++||+
T Consensus        84 ~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~--~~~il~~l~~~~~~~vi~~TH~  152 (216)
T cd03284          84 DDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSI--AWAIVEYLHEKIGAKTLFATHY  152 (216)
T ss_pred             hhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH--HHHHHHHHHhccCCcEEEEeCc
Confidence            4566666543    3355444  579999999999   777776542  34455555555 8899999996

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.00  E-value=8.6e-10  Score=67.39  Aligned_cols=44  Identities=30%  Similarity=0.317  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHhcCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHh
Q psy858           18 NKRKLSTAMALIGDPPLVFLDEPT-----SGVDPISRHRLWAVLSQIQK   61 (72)
Q Consensus        18 ~~qr~~ia~~l~~~p~~lllDEP~-----~gld~~~~~~i~~~l~~~~~   61 (72)
                      ++++..+|++++.+|+++++||||     ++||+..++.+.+.++++++
T Consensus       157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~  205 (215)
T PTZ00132        157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN  205 (215)
T ss_pred             HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence            788899999999999999999999     99999999999999998753

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=98.87  E-value=1.6e-08  Score=62.85  Aligned_cols=55  Identities=16%  Similarity=0.159  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhC-CceEEEEecC
Q psy858           18 NKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAV-LSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus        18 ~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~-l~~~~~~-g~til~~~h~   72 (72)
                      +-++++-....+.+|+++++|||++|+++.....+... ++.+.+. +.+++++||+
T Consensus        96 e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~  152 (218)
T cd03286          96 ELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHY  152 (218)
T ss_pred             HHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEecc
Confidence            34566666666789999999999999999999988877 6666655 8999999996

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=98.77  E-value=6e-08  Score=60.46  Aligned_cols=55  Identities=18%  Similarity=0.231  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhC-CceEEEEecC
Q psy858           18 NKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRL-WAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus        18 ~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i-~~~l~~~~~~-g~til~~~h~   72 (72)
                      +-++++-+..-+.++.++|+|||++|.|+.....+ +.++..+.+. +.++|++||+
T Consensus        97 e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~  153 (222)
T cd03287          97 ELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHY  153 (222)
T ss_pred             HHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEccc
Confidence            44566655566788999999999999998777774 5677777765 8899999996

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK13695 putative NTPase; Provisional

Probab=98.66  E-value=1.3e-07  Score=56.34  Aligned_cols=60  Identities=10%  Similarity=0.167  Sum_probs=46.0

Q ss_pred             CcCCCCChHHHHHHHHHHHHhcCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            9 RESGRYSGGNKRKLSTAMALIGDPPLVFLDE--PTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         9 ~~~~~lS~G~~qr~~ia~~l~~~p~~lllDE--P~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ++...+|++++-...+++....+|+++++||  |+.++++..    .+.+.+..+.|.++++++|+
T Consensus        74 ~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~----~~~l~~~~~~~~~~i~v~h~  135 (174)
T PRK13695         74 KYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKF----VKAVEEVLDSEKPVIATLHR  135 (174)
T ss_pred             eEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHH----HHHHHHHHhCCCeEEEEECc
Confidence            3456789999999999999899999999999  444555444    44444444568999999995

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.60  E-value=1.6e-07  Score=69.35  Aligned_cols=63  Identities=21%  Similarity=0.376  Sum_probs=54.9

Q ss_pred             CcCCCCChHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            9 RESGRYSGGNKRKLSTAMAL----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         9 ~~~~~lS~G~~qr~~ia~~l----~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +....||||+|-..++|.-|    +.+.++++|||--++||......+..+|+++. .+.=+|+|||.
T Consensus      1062 ~~l~~LSGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s-~~sQFIvIThr 1128 (1163)
T COG1196        1062 QSLSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMS-KETQFIVITHR 1128 (1163)
T ss_pred             cchhhcCCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHHHHHhC-cCCeEEEEEcC
Confidence            35667999999999988855    56678999999999999999999999999976 57789999995

>PRK13891 conjugal transfer protein TrbE; Provisional

Probab=98.57  E-value=2.4e-07  Score=66.76  Aligned_cols=49  Identities=22%  Similarity=0.380  Sum_probs=45.0

Q ss_pred             HHHHHhcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           24 TAMALIGDPPLVFLDEPTSGV-DPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        24 ia~~l~~~p~~lllDEP~~gl-d~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +.+++..+|+++++|||+.+| |+..++.+.+.++.+++.|.+++++||+
T Consensus       680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs  729 (852)
T PRK13891        680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQS  729 (852)
T ss_pred             HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            567788999999999999999 7999999999999998889999999996

>PF13175 AAA_15: AAA ATPase domain

Probab=98.57  E-value=4.4e-07  Score=59.44  Aligned_cols=64  Identities=16%  Similarity=0.367  Sum_probs=52.9

Q ss_pred             CcCCCCChHHHHHHHHHHHHh------cC-CC---EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858            9 RESGRYSGGNKRKLSTAMALI------GD-PP---LVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR   72 (72)
Q Consensus         9 ~~~~~lS~G~~qr~~ia~~l~------~~-p~---~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~   72 (72)
                      -+..++|.|.++.+.++..+.      .. +.   ++++|||-+.|-|..++.+.+.|.++.. .+.-||++||+
T Consensus       337 ~~l~~~g~G~~~l~~~~~~~~~~~~~~~~~~~~~~illidEPE~~LHp~~q~~~~~~L~~~~~~~~~QiiitTHS  411 (415)
T PF13175_consen  337 IPLSQRGSGEQNLIYISLLINFLRENKESNNNNYNILLIDEPELHLHPQAQRKFIDFLKKLSKNNNIQIIITTHS  411 (415)
T ss_pred             CChhhcCcchHHHHHHHHHHHHHHHhhhccCcceeEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEECCC
Confidence            356788999998877776542      11 22   9999999999999999999999999876 48899999995

>PRK13830 conjugal transfer protein TrbE; Provisional

Probab=98.51  E-value=3.8e-07  Score=65.48  Aligned_cols=46  Identities=28%  Similarity=0.498  Sum_probs=42.0

Q ss_pred             HHhcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           27 ALIGDPPLVFLDEPTSGV-DPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        27 ~l~~~p~~lllDEP~~gl-d~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      .+..+|+++++|||+.+| |+...+.+.+.++..++.|.+++++||+
T Consensus       648 ~l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~  694 (818)
T PRK13830        648 RLTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQS  694 (818)
T ss_pred             hcCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence            346899999999999999 7999999999999998889999999996

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=98.49  E-value=5.9e-07  Score=63.02  Aligned_cols=59  Identities=24%  Similarity=0.437  Sum_probs=42.2

Q ss_pred             cCCCCChHHHHHHHHHH--HHh----cCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCceEEEEecC
Q psy858           10 ESGRYSGGNKRKLSTAM--ALI----GDPPLVFLDEPTSGVDPISRHRLWA-VLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        10 ~~~~lS~G~~qr~~ia~--~l~----~~p~~lllDEP~~gld~~~~~~i~~-~l~~~~~~g~til~~~h~   72 (72)
                      .+..||||++|-+++|.  |++    ...++ ++|||++.||+..+..+.+ ++...   ..-||+.|||
T Consensus       548 ~~~~lS~Ge~~~~~la~~~al~~~~~~~~p~-iiD~p~~~lD~~~r~~l~~~~~~~~---~~QvIils~d  613 (650)
T TIGR03185       548 DKERLSAGERQILAIALLWGLAKVSGRRLPV-IIDTPLGRLDSSHRENLVVNYFPKA---SHQVLLLSTD  613 (650)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhcCCCCCE-EEcCCccccChHHHHHHHHHHhhcc---CCeEEEEech
Confidence            56789999999876655  443    22344 6799999999999999875 55432   4566776665

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>COG3910 Predicted ATPase [General function prediction only]

Probab=98.44  E-value=1.4e-06  Score=53.84  Aligned_cols=59  Identities=22%  Similarity=0.389  Sum_probs=48.6

Q ss_pred             CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           13 RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        13 ~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ..|.|+-=.--+ .--.++.-++|||||-++|.|.-+-.+..++.++.++|.-+||+||.
T Consensus       129 ~~SHGEsf~~i~-~~rf~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHS  187 (233)
T COG3910         129 HMSHGESFLAIF-HNRFNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHS  187 (233)
T ss_pred             hhccchHHHHHH-HHHhccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence            458887543333 33356677999999999999999999999999999999999999995

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=98.41  E-value=1.6e-06  Score=54.08  Aligned_cols=42  Identities=19%  Similarity=0.343  Sum_probs=35.0

Q ss_pred             cCCCEEEEeCCCCCC----CHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858           30 GDPPLVFLDEPTSGV----DPISRHRLWAVLSQIQKTGQSIVLTSH   71 (72)
Q Consensus        30 ~~p~~lllDEP~~gl----d~~~~~~i~~~l~~~~~~g~til~~~h   71 (72)
                      .+|+++++|||++++    |+...+.+.+.++.+++.|.|++++++
T Consensus       116 ~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~t~~  161 (230)
T PRK08533        116 YEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIILTAN  161 (230)
T ss_pred             cCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEEEec
Confidence            469999999999998    888888899999888777887776654

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=98.38  E-value=3.4e-06  Score=52.30  Aligned_cols=60  Identities=15%  Similarity=0.160  Sum_probs=45.8

Q ss_pred             CCChHHHHHHHHHHHHhc--CCCEEEEeCCCCC---CCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           13 RYSGGNKRKLSTAMALIG--DPPLVFLDEPTSG---VDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        13 ~lS~G~~qr~~ia~~l~~--~p~~lllDEP~~g---ld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ..+.++.+.+..+...+.  +|+++++|||++.   .|......+...++.+++.|.|+++++|.
T Consensus       100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~  164 (234)
T PRK06067        100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHP  164 (234)
T ss_pred             cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence            346778889998888887  8999999999964   45555555555566666678999999884

>PF13166 AAA_13: AAA domain

Probab=98.34  E-value=4.7e-06  Score=58.60  Aligned_cols=64  Identities=20%  Similarity=0.341  Sum_probs=54.7

Q ss_pred             CcCCCCChHHHHHHHHHHHH--hc-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--hCCceEEEEecC
Q psy858            9 RESGRYSGGNKRKLSTAMAL--IG-------DPPLVFLDEPTSGVDPISRHRLWAVLSQIQ--KTGQSIVLTSHR   72 (72)
Q Consensus         9 ~~~~~lS~G~~qr~~ia~~l--~~-------~p~~lllDEP~~gld~~~~~~i~~~l~~~~--~~g~til~~~h~   72 (72)
                      .....||-|+|.-++++-.|  +.       ...++++|-|.++||...+..+...|.++.  ....=||+.|||
T Consensus       496 ~~~~~LSEGEk~~iAf~yFla~l~~~~~~~~~~~iiViDDPISSLD~~~~~~v~~~l~~~~~~~~~~QviIlTHn  570 (712)
T PF13166_consen  496 KPAKILSEGEKRAIAFAYFLAELKEDDEDINKKKIIVIDDPISSLDHNRRFGVASRLKEEIKNSKFRQVIILTHN  570 (712)
T ss_pred             cccCccCHHHHHHHHHHHHHHHHhhcccccCcCceEEECCCCCCCCHHHHHHHHHHHHHHhhcCCcceEEEEeCc
Confidence            34678999999999999854  23       567999999999999999999999999985  446779999996

>COG4637 Predicted ATPase [General function prediction only]

Probab=98.30  E-value=4.4e-06  Score=54.97  Aligned_cols=60  Identities=28%  Similarity=0.490  Sum_probs=53.9

Q ss_pred             CCCChHHHHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           12 GRYSGGNKRKLSTAMALIGD--PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        12 ~~lS~G~~qr~~ia~~l~~~--p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ..||-|.-+-++++-+|.+.  |.++++|||-.+|=|..-..+..++...++.+ -|+++||.
T Consensus       269 ~eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~~sAak~s-Qv~VsTHS  330 (373)
T COG4637         269 RELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRS-QVIVSTHS  330 (373)
T ss_pred             hhccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHHHHhhccc-eEEEEeCC
Confidence            48999999999999999875  67999999999999999999999999876655 89999994

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=98.29  E-value=7.1e-07  Score=55.61  Aligned_cols=44  Identities=30%  Similarity=0.370  Sum_probs=37.1

Q ss_pred             HhcCCCEEEEeCCCC------CCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858           28 LIGDPPLVFLDEPTS------GVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus        28 l~~~p~~lllDEP~~------gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      ...+|+++++| |++      ..|+.....+.+.+.+++++ |.+|++++|.
T Consensus       108 ~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~  158 (239)
T cd01125         108 LIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHV  158 (239)
T ss_pred             HhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEecc
Confidence            35799999999 765      47999999999999888764 9999999994

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=98.24  E-value=1e-05  Score=46.36  Aligned_cols=60  Identities=20%  Similarity=0.234  Sum_probs=45.1

Q ss_pred             CCChHHHHHHHHHHHHhcCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           13 RYSGGNKRKLSTAMALIGDPPLVFLDEPTS----------GVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        13 ~lS~G~~qr~~ia~~l~~~p~~lllDEP~~----------gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ..+.+..++...+.+...+|+++++||++.          +.+....+.+.++.....+.+.++++++|.
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~  136 (165)
T cd01120          67 DPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQV  136 (165)
T ss_pred             CCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEec
Confidence            334555667778888899999999999995          445555677777766655569999999984

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PRK13873 conjugal transfer ATPase TrbE; Provisional

Probab=98.18  E-value=5.7e-06  Score=59.43  Aligned_cols=47  Identities=26%  Similarity=0.396  Sum_probs=41.5

Q ss_pred             HHHhcCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           26 MALIGDPPLVFLDEPTSGVD-PISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        26 ~~l~~~p~~lllDEP~~gld-~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ..+-.+|+++++|||+.+|| +..++.+.+.++..++.|.+++++||+
T Consensus       630 ~~~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~  677 (811)
T PRK13873        630 DRFDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQS  677 (811)
T ss_pred             HHhcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence            34456899999999999999 788999999999988889999999995

>KOG0964|consensus

Probab=98.13  E-value=1.6e-06  Score=63.03  Aligned_cols=53  Identities=21%  Similarity=0.398  Sum_probs=46.0

Q ss_pred             cCCCCChHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy858           10 ESGRYSGGNKRKLSTAMALI----GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT   62 (72)
Q Consensus        10 ~~~~lS~G~~qr~~ia~~l~----~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~   62 (72)
                      .+.+|||||+.-+|+|.-|+    -+.++++|||.-++||+.++..+.++|+++...
T Consensus      1094 ~m~QLSGGQKsvvALaLIFaIQrcDPAPFYlfDEIDAaLDaQyR~aVa~lIkelS~~ 1150 (1200)
T KOG0964|consen 1094 EMEQLSGGQKSVVALALIFAIQRCDPAPFYLFDEIDAALDAQYRTAVADLIKELSDS 1150 (1200)
T ss_pred             HHHHhcCchHHHHHHHHHHHHHhcCCcchhhHhHHhhhccHHHHHHHHHHHHHHhhc
Confidence            45689999999999988663    344799999999999999999999999999764

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=98.07  E-value=2.3e-05  Score=50.22  Aligned_cols=42  Identities=24%  Similarity=0.349  Sum_probs=29.9

Q ss_pred             HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           24 TAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        24 ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      .....+.+|+++++|||++      .+.+..++..+ +.|.++++++|+
T Consensus       187 ~~~i~~~~P~villDE~~~------~e~~~~l~~~~-~~G~~vI~ttH~  228 (270)
T TIGR02858       187 MMLIRSMSPDVIVVDEIGR------EEDVEALLEAL-HAGVSIIATAHG  228 (270)
T ss_pred             HHHHHhCCCCEEEEeCCCc------HHHHHHHHHHH-hCCCEEEEEech
Confidence            3344447999999999974      33455555554 469999999995

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>PRK13898 type IV secretion system ATPase VirB4; Provisional

Probab=98.03  E-value=2.1e-05  Score=56.48  Aligned_cols=46  Identities=22%  Similarity=0.425  Sum_probs=41.7

Q ss_pred             HHhcCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           27 ALIGDPPLVFLDEPTSGVD-PISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        27 ~l~~~p~~lllDEP~~gld-~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      .+...|.++++|||...|| +...+.+.++++..++.|..++++||+
T Consensus       638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~  684 (800)
T PRK13898        638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQS  684 (800)
T ss_pred             HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence            4567899999999999999 888999999999998888999999995

>KOG0962|consensus

Probab=98.03  E-value=1.5e-05  Score=59.49  Aligned_cols=60  Identities=28%  Similarity=0.391  Sum_probs=50.0

Q ss_pred             CCChHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH---h--CCceEEEEecC
Q psy858           13 RYSGGNKR------KLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ---K--TGQSIVLTSHR   72 (72)
Q Consensus        13 ~lS~G~~q------r~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~---~--~g~til~~~h~   72 (72)
                      .-|.||+=      |+++|=.|++++.++-|||||++||.....-++..+..+.   +  .+--.|++|||
T Consensus      1183 RcSAGQKvLAsliIRLALAEtf~snCgvLALDEPTTNLD~~niesLa~~L~~II~~rr~q~nfqLiVITHD 1253 (1294)
T KOG0962|consen 1183 RCSAGQKVLASLIIRLALAETFGSNCGVLALDEPTTNLDRENIESLAKALSRIIEERRRQRNFQLIVITHD 1253 (1294)
T ss_pred             CccchHHHHHHHHHHHHHHHHHhhccccccccCCccccCHhHHHHHHHHHHHHHHHHhhccCcceeeeehH
Confidence            45888874      8899999999999999999999999999988887776653   2  25668899996

>PRK05399 DNA mismatch repair protein MutS; Provisional

Probab=97.94  E-value=6.4e-05  Score=54.59  Aligned_cols=63  Identities=27%  Similarity=0.267  Sum_probs=44.7

Q ss_pred             cCcCCCCChHHHHHHHHHHHHhc--CCCEEEEeCC---CCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            8 HRESGRYSGGNKRKLSTAMALIG--DPPLVFLDEP---TSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         8 ~~~~~~lS~G~~qr~~ia~~l~~--~p~~lllDEP---~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +......|.-+.....++..+-.  ++.++|+|||   |+.+|  .....+.++..+.+. |.+++++||+
T Consensus       661 d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~d--g~aia~aile~l~~~~~~~~l~aTH~  729 (854)
T PRK05399        661 DDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYD--GLSIAWAVAEYLHDKIGAKTLFATHY  729 (854)
T ss_pred             cccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcch--hHHHHHHHHHHHHhcCCceEEEEech
Confidence            33445677777777777776654  8899999999   66666  333455666666665 6899999995

>KOG0996|consensus

Probab=97.88  E-value=1.4e-05  Score=59.06  Aligned_cols=61  Identities=20%  Similarity=0.269  Sum_probs=50.2

Q ss_pred             CcCCCCChHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858            9 RESGRYSGGNKRKLSTAMALI----GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS   70 (72)
Q Consensus         9 ~~~~~lS~G~~qr~~ia~~l~----~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~   70 (72)
                      +++.+||||++..-++|..|+    .+.++++|||.-++||....-.+...|++-. .+.-+|+||
T Consensus      1191 K~I~NLSGGEKTLSSLALVFALH~YkPTPlYVMDEIDAALDfkNVSIVanYIkErT-kNAQFIIIS 1255 (1293)
T KOG0996|consen 1191 KNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVANYIKERT-KNAQFIIIS 1255 (1293)
T ss_pred             hhcccCCcchhHHHHHHHHHHHHccCCCCceehhhHHHhhccccchhHHHHHHHhc-cCCeEEEEE
Confidence            468999999999888887553    4468999999999999999999999998743 456677766

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=97.87  E-value=6.9e-06  Score=52.08  Aligned_cols=58  Identities=26%  Similarity=0.299  Sum_probs=44.6

Q ss_pred             CCCCChHH--------HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH-HHHHHHHHHhCCceEEEEecC
Q psy858           11 SGRYSGGN--------KRKLSTAMALIGDPPLVFLDEPTSGVDPISRHR-LWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        11 ~~~lS~G~--------~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~-i~~~l~~~~~~g~til~~~h~   72 (72)
                      ...+|||+        +|++++|+++..++++.++  ||+.+|..+... +.  +..++..+.|.|+.+|+
T Consensus       127 G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~  193 (249)
T cd01128         127 GKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRR  193 (249)
T ss_pred             CCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchH
Confidence            45679999        9999999999899999999  999999533332 33  44444356788998884

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>KOG0933|consensus

Probab=97.87  E-value=1.7e-05  Score=58.00  Aligned_cols=60  Identities=20%  Similarity=0.325  Sum_probs=48.1

Q ss_pred             cCCCCChHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858           10 ESGRYSGGNKRKLSTAMAL----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS   70 (72)
Q Consensus        10 ~~~~lS~G~~qr~~ia~~l----~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~   70 (72)
                      -..+||||||..||++.-|    ..+.+++||||--++||....+.|-.+|+..- .+.-+|+||
T Consensus      1079 SL~ELSGGQRSLVALsLIlamL~fkPAPlYILDEVDAALDLSHTQNIG~mIkthF-~~sQFIVVS 1142 (1174)
T KOG0933|consen 1079 SLSELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-THSQFIVVS 1142 (1174)
T ss_pred             HHHHhcCchHHHHHHHHHHHHHcCCCCceeehhhhHHhhcchhhhhHHHHHHhhC-CCCeEEEEE
Confidence            3468999999999876633    45678999999999999999999999998743 355566665

>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=97.76  E-value=0.00022  Score=49.81  Aligned_cols=59  Identities=19%  Similarity=0.330  Sum_probs=50.3

Q ss_pred             CCCChHHHHHHHHHH--HHhcC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858           12 GRYSGGNKRKLSTAM--ALIGD--PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH   71 (72)
Q Consensus        12 ~~lS~G~~qr~~ia~--~l~~~--p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h   71 (72)
                      +.-|||+--|+.+|.  +++..  .+.+||||--+|+.=.....+.+.|+++.+ ..-|+.|||
T Consensus       430 KvASGGELSRimLAlk~i~~~~~~~ptlIFDEVD~GIsG~~A~aVg~~L~~Ls~-~~QVl~VTH  492 (557)
T COG0497         430 KVASGGELSRIMLALKVILSRKDDTPTLIFDEVDTGISGRVAQAVGKKLRRLSE-HHQVLCVTH  492 (557)
T ss_pred             hhcchhHHHHHHHHHHHHHhccCCCCeEEEecccCCCChHHHHHHHHHHHHHhc-CceEEEEec
Confidence            446999999999887  34443  458999999999999999999999999864 678999999

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=97.76  E-value=2e-06  Score=58.69  Aligned_cols=57  Identities=16%  Similarity=0.287  Sum_probs=38.1

Q ss_pred             hhcCcCCCCChHHHHHHHHH--HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            6 YRHRESGRYSGGNKRKLSTA--MALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         6 ~~~~~~~~lS~G~~qr~~ia--~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ..++....+|+|++||+.|+  .++...|+..          ...++.+.++++.+++.|.|+++++|+
T Consensus       108 ~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~~~g~TvLLtsh~  166 (484)
T TIGR02655       108 LIERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLKQIGVTTVMTTER  166 (484)
T ss_pred             HHHHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence            33444455666666666666  3443433322          467788999998888789999999995

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>KOG0018|consensus

Probab=97.67  E-value=5.4e-05  Score=55.71  Aligned_cols=61  Identities=21%  Similarity=0.319  Sum_probs=49.4

Q ss_pred             hcCcCCCCChHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858            7 RHRESGRYSGGNKRKLSTAMALIG----DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS   70 (72)
Q Consensus         7 ~~~~~~~lS~G~~qr~~ia~~l~~----~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~   70 (72)
                      +-++..+||||++.-.++|..++-    +.++++|||.-++||......+...|+   .++--+|+||
T Consensus      1045 RFr~m~~LSGGEKTvAaLALLFaihsy~PaPFfvlDEiDAALDntNi~kvasyIr---~~~~Q~IvIS 1109 (1141)
T KOG0018|consen 1045 RFRPMDNLSGGEKTVAALALLFAIHSYKPAPFFVLDEIDAALDNTNIGKVASYIR---SSNFQFIVIS 1109 (1141)
T ss_pred             ccCchhhcCccHHHHHHHHHHHHhccCCCCCceehhhHHHHhhhccHHHHHHHHh---cCCceEEEEe
Confidence            345678999999999999887753    357999999999999999999999998   3455555554

>PF00488 MutS_V: MutS domain V C-terminus

Probab=97.62  E-value=0.00087  Score=42.13  Aligned_cols=62  Identities=18%  Similarity=0.263  Sum_probs=40.5

Q ss_pred             CCCCChHHH--HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHh-CCceEEEEecC
Q psy858           11 SGRYSGGNK--RKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLS-QIQK-TGQSIVLTSHR   72 (72)
Q Consensus        11 ~~~lS~G~~--qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~-~~~~-~g~til~~~h~   72 (72)
                      ...+|.=+.  ++++-+.--+.+..++|+||+..|-++.....+...+. .+.+ .+..++++||+
T Consensus       100 ~~~~S~F~~E~~~~~~il~~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~  165 (235)
T PF00488_consen  100 ESGLSTFMAEMKRLSSILRNATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHF  165 (235)
T ss_dssp             TTSSSHHHHHHHHHHHHHHH--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-
T ss_pred             ccccccHHHhHHHHHhhhhhcccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEecc
Confidence            344555444  44443333356677999999999999999988655444 4555 48889999995

; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....

>PRK08699 DNA polymerase III subunit delta'; Validated

Probab=97.48  E-value=0.00024  Score=46.61  Aligned_cols=37  Identities=24%  Similarity=0.320  Sum_probs=32.4

Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           35 VFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        35 lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +++|||+.+||+.++..+.+.+.+.. .+.++|++||+
T Consensus       116 V~iiEp~~~Ld~~a~naLLk~LEep~-~~~~~Ilvth~  152 (325)
T PRK08699        116 VILIHPAESMNLQAANSLLKVLEEPP-PQVVFLLVSHA  152 (325)
T ss_pred             EEEEechhhCCHHHHHHHHHHHHhCc-CCCEEEEEeCC
Confidence            55689999999999999999998864 47889999996

>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.41  E-value=0.00099  Score=46.92  Aligned_cols=64  Identities=19%  Similarity=0.298  Sum_probs=54.2

Q ss_pred             CcCCC-CChHHHHHHHHHHHHh--------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            9 RESGR-YSGGNKRKLSTAMALI--------GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         9 ~~~~~-lS~G~~qr~~ia~~l~--------~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ....+ ||-|++.-++++-.|+        ..-+++++|.|.+++|..-..+....++....+++-|++-||+
T Consensus       524 ~~~gn~LSEGekt~iaf~yflakL~enpd~~k~kvvViDDPisSfDsn~lf~~~~~v~~~~t~~kQviVLtHn  596 (758)
T COG4694         524 QLVGNTLSEGEKTFIAFLYFLAKLKENPDISKNKVVVIDDPISSFDSNILFRVSVLVKEEKTNIKQVIVLTHN  596 (758)
T ss_pred             ccccccccccchhHHHHHHHHHHHHhCcccccCeeEEecCCccccchhHHHHHHHHHHHHHhCceEEEEEecc
Confidence            34455 9999999888876553        2346899999999999999999999999988889999999996

>PF13514 AAA_27: AAA domain

Probab=97.30  E-value=0.001  Score=49.53  Aligned_cols=62  Identities=18%  Similarity=0.256  Sum_probs=47.6

Q ss_pred             CcCCCCChHHHH------HHHHHHHH-hcCCCE-EEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858            9 RESGRYSGGNKR------KLSTAMAL-IGDPPL-VFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH   71 (72)
Q Consensus         9 ~~~~~lS~G~~q------r~~ia~~l-~~~p~~-lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h   71 (72)
                      ..+..||.|-+=      |++++..+ -.+.++ +|+|++|.+.|..-....+++|.++.+.+ =||+-||
T Consensus      1021 ~~~~~LS~GT~dQLYLALRLA~~e~~~~~~~~lP~IlDD~fvnfDd~R~~~~l~~L~~ls~~~-QVI~FTc 1090 (1111)
T PF13514_consen 1021 VPVEELSRGTRDQLYLALRLALAELLAEQGEPLPFILDDIFVNFDDERARAALELLAELSRRR-QVIYFTC 1090 (1111)
T ss_pred             eeHHHhCHHHHHHHHHHHHHHHHHHHHhCCCCCcEEeeCCccccCHHHHHHHHHHHHHhccCC-eEEEEec
Confidence            356679999984      66666666 344454 99999999999999999999999987654 4555554

>TIGR01070 mutS1 DNA mismatch repair protein MutS

Probab=97.16  E-value=0.0029  Score=46.20  Aligned_cols=62  Identities=15%  Similarity=0.069  Sum_probs=43.3

Q ss_pred             CCCCChHHHHHHHHHHH--HhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHh-CCceEEEEecC
Q psy858           11 SGRYSGGNKRKLSTAMA--LIGDPPLVFLDEPTSGVDPISRHRLWAV-LSQIQK-TGQSIVLTSHR   72 (72)
Q Consensus        11 ~~~lS~G~~qr~~ia~~--l~~~p~~lllDEP~~gld~~~~~~i~~~-l~~~~~-~g~til~~~h~   72 (72)
                      ...+|.=+.-...++..  -+.++.++|+||+..|.++.....+... +..+.+ .+..++++||.
T Consensus       649 ~~g~STF~~Em~e~a~IL~~at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~  714 (840)
T TIGR01070       649 ASGRSTFMVEMTEAANILHNATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHY  714 (840)
T ss_pred             hcCcchHHHHHHHHHHHHhhCCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCc
Confidence            34455555444444444  4577899999999999988888875554 444455 58889999995

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=97.10  E-value=0.00081  Score=45.82  Aligned_cols=59  Identities=15%  Similarity=0.178  Sum_probs=45.1

Q ss_pred             CCCCChHHHHHHHHHHHHh-------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858           11 SGRYSGGNKRKLSTAMALI-------GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH   71 (72)
Q Consensus        11 ~~~lS~G~~qr~~ia~~l~-------~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h   71 (72)
                      ..+.|.|+|+|.+.+.+.+       .++-++++|+||++.|+.  +++...+.+.-..|.+..+.+|
T Consensus       219 tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~  284 (432)
T PRK06793        219 TSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESY  284 (432)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeecc
Confidence            4678999999999999877       788899999999999996  5566555554434666665544

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.07  E-value=0.0026  Score=38.77  Aligned_cols=43  Identities=26%  Similarity=0.315  Sum_probs=31.6

Q ss_pred             HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           23 STAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        23 ~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ++.+++..+|+++++|||.   |+...   ...+ +....|+.++.++|.
T Consensus        66 ~i~~aLr~~pd~ii~gEir---d~e~~---~~~l-~~a~~G~~v~~t~Ha  108 (198)
T cd01131          66 ALKAALRQDPDVILVGEMR---DLETI---RLAL-TAAETGHLVMSTLHT  108 (198)
T ss_pred             HHHHHhcCCcCEEEEcCCC---CHHHH---HHHH-HHHHcCCEEEEEecC
Confidence            5778899999999999996   44432   2223 344569999999994

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=96.67  E-value=0.037  Score=30.10  Aligned_cols=61  Identities=26%  Similarity=0.276  Sum_probs=44.7

Q ss_pred             CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH------HHHHHHhCCceEEEEec
Q psy858           11 SGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWA------VLSQIQKTGQSIVLTSH   71 (72)
Q Consensus        11 ~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~------~l~~~~~~g~til~~~h   71 (72)
                      .....+++..+..+.++-..+|.++++||+..-.+.........      ........+..++.++|
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  124 (148)
T smart00382       58 KASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTN  124 (148)
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeC
Confidence            34567777788888888888889999999999999888876654      12222334677877776

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>TIGR00152 dephospho-CoA kinase

Probab=96.52  E-value=0.00097  Score=40.12  Aligned_cols=54  Identities=17%  Similarity=0.211  Sum_probs=46.0

Q ss_pred             hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858           16 GGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH   71 (72)
Q Consensus        16 ~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h   71 (72)
                      .|+..|..++..+..+|+.+..+|  +.++|...+.+.+.+.+..+.|.+|++.+|
T Consensus        60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~p  113 (188)
T TIGR00152        60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVP  113 (188)
T ss_pred             CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEch
Confidence            478899999999999999887776  789999999999999887555678888766

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PRK06893 DNA replication initiation factor; Validated

Probab=96.46  E-value=0.01  Score=36.92  Aligned_cols=43  Identities=19%  Similarity=0.390  Sum_probs=32.0

Q ss_pred             hcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858           29 IGDPPLVFLDEPTSGV-DPISRHRLWAVLSQIQKTGQSIVLTSH   71 (72)
Q Consensus        29 ~~~p~~lllDEP~~gl-d~~~~~~i~~~l~~~~~~g~til~~~h   71 (72)
                      +.+++++++||..... +....+.+.+++....+.|.+++++|+
T Consensus        89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits  132 (229)
T PRK06893         89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISA  132 (229)
T ss_pred             cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeC
Confidence            4578999999998754 555566788888887666777766654

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family

Probab=96.46  E-value=0.011  Score=36.29  Aligned_cols=42  Identities=26%  Similarity=0.323  Sum_probs=33.1

Q ss_pred             cCCCEEEEeC-----CCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858           30 GDPPLVFLDE-----PTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH   71 (72)
Q Consensus        30 ~~p~~lllDE-----P~~gld~~~~~~i~~~l~~~~~~g~til~~~h   71 (72)
                      .+++.+++|-     |+.+.+...++.+.++++.+++.|.|+++++|
T Consensus       106 ~~~~~vVIDsls~l~~~~~~~~~~r~~l~~l~~~lk~~~~tvll~s~  152 (224)
T TIGR03880       106 LGASRVVIDPISLLETLFDDDAERRTELFRFYSSLRETGVTTILTSE  152 (224)
T ss_pred             hCCCEEEEcChHHHhhhcCCHHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence            3678999994     33455666777888899888878999999998

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=96.43  E-value=0.015  Score=38.33  Aligned_cols=45  Identities=22%  Similarity=0.225  Sum_probs=33.6

Q ss_pred             HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           21 KLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        21 r~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      .-++.+++-.+|+++++||+.   |+.+.....+    ....|++++.+.|.
T Consensus       185 ~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~tGh~v~~T~Ha  229 (343)
T TIGR01420       185 ANALRAALREDPDVILIGEMR---DLETVELALT----AAETGHLVFGTLHT  229 (343)
T ss_pred             HHHHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHHcCCcEEEEEcC
Confidence            344677889999999999996   7776654332    34569999999883

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=96.41  E-value=0.015  Score=37.73  Aligned_cols=44  Identities=20%  Similarity=0.249  Sum_probs=32.3

Q ss_pred             HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCc-eEEEEecC
Q psy858           21 KLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQ-SIVLTSHR   72 (72)
Q Consensus        21 r~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~-til~~~h~   72 (72)
                      .-.+..++-.+|+++++|||..       .+.+++++.+. .|+ +++.+.|.
T Consensus       208 ~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a~~-~g~~~~i~T~Ha  252 (308)
T TIGR02788       208 KDLLQSCLRMRPDRIILGELRG-------DEAFDFIRAVN-TGHPGSITTLHA  252 (308)
T ss_pred             HHHHHHHhcCCCCeEEEeccCC-------HHHHHHHHHHh-cCCCeEEEEEeC
Confidence            3456678899999999999996       34566666654 455 56888884

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=96.34  E-value=0.01  Score=40.40  Aligned_cols=41  Identities=15%  Similarity=0.358  Sum_probs=33.0

Q ss_pred             cCCCEEEEeCCCCCCCHH-HHHHHHHHHHHHHhCCceEEEEe
Q psy858           30 GDPPLVFLDEPTSGVDPI-SRHRLWAVLSQIQKTGQSIVLTS   70 (72)
Q Consensus        30 ~~p~~lllDEP~~gld~~-~~~~i~~~l~~~~~~g~til~~~   70 (72)
                      .+++++++|||...++.. .++.++.++..+.+.|+.+|+++
T Consensus       193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIits  234 (440)
T PRK14088        193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICS  234 (440)
T ss_pred             hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEEC
Confidence            369999999999888765 45678888888777777888876

>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]

Probab=96.11  E-value=0.019  Score=38.56  Aligned_cols=44  Identities=30%  Similarity=0.446  Sum_probs=38.0

Q ss_pred             CCCChHHHHHHHHHHHH---------hcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy858           12 GRYSGGNKRKLSTAMAL---------IGDPPLVFLDEPTSGVDPISRHRLWAV   55 (72)
Q Consensus        12 ~~lS~G~~qr~~ia~~l---------~~~p~~lllDEP~~gld~~~~~~i~~~   55 (72)
                      ...|.||++-+.++.-|         ....++++||+-++-||..-+..+++.
T Consensus       274 ~~~S~Gqqk~l~laLrLAe~~l~~~~~g~~PILLLDDv~seLD~~Rr~~Ll~~  326 (363)
T COG1195         274 DFASQGQQKTLALALRLAEIELLREETGEYPILLLDDVASELDDGRRAALLDT  326 (363)
T ss_pred             hhcCcchHHHHHHHHHHHHHHHHHHhcCCCCEEEechhhHhhCHHHHHHHHhh
Confidence            45799999988877644         567899999999999999999999987

>COG4938 Uncharacterized conserved protein [Function unknown]

Probab=96.10  E-value=0.015  Score=38.37  Aligned_cols=49  Identities=20%  Similarity=0.474  Sum_probs=41.6

Q ss_pred             HHHHHHhcCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           23 STAMALIGDPP-LVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        23 ~ia~~l~~~p~-~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      .+++ ++.+|+ ++|..+|-+.|-|..+-.+.+++.++++.|.-+++.||.
T Consensus       252 ~L~l-li~K~~~lIIIEnPEAHLHP~gQs~lg~llA~~a~~gvqvVveTHS  301 (374)
T COG4938         252 GLML-LIVKKKYLIIIENPEAHLHPEGQSKLGDLLAELAARGVQVVVETHS  301 (374)
T ss_pred             HHHe-eeecCCcEEEEcCchhhcCchhHHHHHHHHHHHHhcCcEEEEEech
Confidence            3444 455554 889999999999999999999999998889999999994

>PRK04863 mukB cell division protein MukB; Provisional

Probab=96.09  E-value=0.0083  Score=46.27  Aligned_cols=57  Identities=25%  Similarity=0.459  Sum_probs=41.8

Q ss_pred             cCCCCChHHHHHHHHHHHHh--------cC--------C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858           10 ESGRYSGGNKRKLSTAMALI--------GD--------P-PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS   70 (72)
Q Consensus        10 ~~~~lS~G~~qr~~ia~~l~--------~~--------p-~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~   70 (72)
                      ..+.+|||++..+.+...++        ..        | ++++|||. +++|..+...++++++.+   |.=+||+|
T Consensus      1362 ~~~~lSgGE~~~~~~~~l~a~l~~~~~~~~~~r~~~~~~vrl~~lDea-~r~D~~~~~~~~~l~~~~---~~q~i~~t 1435 (1486)
T PRK04863       1362 ESGALSTGEAIGTGMSILVMVVQSWEEESRRLRGKDISPCRLLFLDEA-ARLDAKSIATLFELCERL---DMQLLIAA 1435 (1486)
T ss_pred             CCCCCCcchhHHHHHHHHHHHHHHhhhccCcccCCcccchHHHHHHHh-hcCCHHHHHHHHHHHHHc---CCcEEEec
Confidence            46789999998776666443        21        2 44599999 999999999999998743   44555554

>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=96.04  E-value=0.024  Score=39.00  Aligned_cols=59  Identities=20%  Similarity=0.244  Sum_probs=44.1

Q ss_pred             CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH-----HHH----------HHHHHHHHHh-CCceEEEEe
Q psy858           12 GRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPIS-----RHR----------LWAVLSQIQK-TGQSIVLTS   70 (72)
Q Consensus        12 ~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~-----~~~----------i~~~l~~~~~-~g~til~~~   70 (72)
                      .+=||-.-|-..|.-|+-.+.+++|+||-|+.-+.-.     +..          +.+.++.+.+ .|.+.|++.
T Consensus       321 ~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~  395 (448)
T PF09818_consen  321 ENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVV  395 (448)
T ss_pred             cCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEe
Confidence            3458999999999999999999999999998765444     322          3455666644 488877764

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=95.64  E-value=0.062  Score=29.55  Aligned_cols=50  Identities=20%  Similarity=0.288  Sum_probs=35.9

Q ss_pred             HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCceEEEEec
Q psy858           21 KLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-----TGQSIVLTSH   71 (72)
Q Consensus        21 r~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-----~g~til~~~h   71 (72)
                      ..........++.++++||.-.. ++.....+...+.....     .+..++++++
T Consensus        74 ~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~  128 (151)
T cd00009          74 RLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATN  128 (151)
T ss_pred             hHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecC
Confidence            34445566778999999997765 56666777777777642     4678888876

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family

Probab=95.42  E-value=0.064  Score=38.51  Aligned_cols=44  Identities=23%  Similarity=0.406  Sum_probs=37.3

Q ss_pred             hcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           29 IGDPPLVFLDEPTSGV-DPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        29 ~~~p~~lllDEP~~gl-d~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      -..|.++++||.-.-+ ++...+.+.++++..++.|..++++||+
T Consensus       627 ~~~~~~i~iDEa~~ll~~~~~~~~i~~~~r~~RK~~~~~~~~TQ~  671 (785)
T TIGR00929       627 DGRPFLIIIDEAWQYLGNPVFAAKIRDWLKTLRKANGIVVLATQS  671 (785)
T ss_pred             CCCCeEEEEechhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence            4567899999987777 5778888999999988889999999985

Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=95.15  E-value=0.17  Score=34.72  Aligned_cols=47  Identities=6%  Similarity=0.193  Sum_probs=37.2

Q ss_pred             HHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858           25 AMALIGDPPLVFLDEPT-SGVDPISRHRLWAVLSQIQKTGQSIVLTSH   71 (72)
Q Consensus        25 a~~l~~~p~~lllDEP~-~gld~~~~~~i~~~l~~~~~~g~til~~~h   71 (72)
                      .+.-+.+++++++||.- -..+....+.+..++..+...|+.+|++++
T Consensus       200 ~~~~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd  247 (450)
T PRK14087        200 FKNEICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSD  247 (450)
T ss_pred             HHHHhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECC
Confidence            34446789999999984 455678889999999888777888888865

>PRK08181 transposase; Validated

Probab=94.95  E-value=0.095  Score=33.75  Aligned_cols=42  Identities=21%  Similarity=0.290  Sum_probs=32.6

Q ss_pred             hcCCCEEEEeCC-CCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858           29 IGDPPLVFLDEP-TSGVDPISRHRLWAVLSQIQKTGQSIVLTSH   71 (72)
Q Consensus        29 ~~~p~~lllDEP-~~gld~~~~~~i~~~l~~~~~~g~til~~~h   71 (72)
                      +.+++++++||. ....+......+++++..- .++.++|++|+
T Consensus       165 l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R-~~~~s~IiTSN  207 (269)
T PRK08181        165 LDKFDLLILDDLAYVTKDQAETSVLFELISAR-YERRSILITAN  207 (269)
T ss_pred             HhcCCEEEEeccccccCCHHHHHHHHHHHHHH-HhCCCEEEEcC
Confidence            568999999998 4567888888999999754 33467887765

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=94.81  E-value=0.068  Score=33.62  Aligned_cols=52  Identities=17%  Similarity=0.171  Sum_probs=32.5

Q ss_pred             HHHHHHHHHh--cCCCEEEEeCCCCCCCH-------H-HHHHHHHHHHHHHh-CCceEEEEec
Q psy858           20 RKLSTAMALI--GDPPLVFLDEPTSGVDP-------I-SRHRLWAVLSQIQK-TGQSIVLTSH   71 (72)
Q Consensus        20 qr~~ia~~l~--~~p~~lllDEP~~gld~-------~-~~~~i~~~l~~~~~-~g~til~~~h   71 (72)
                      ..+..++.++  .+|+++++|..+.-.+.       . ....+...|+.+++ .++++++++|
T Consensus       127 ~i~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~~L~~la~~~~vtvll~sq  189 (271)
T cd01122         127 SVLEKVRYMAVSHGIQHIIIDNLSIMVSDERASGDERKALDEIMTKLRGFATEHGIHITLVSH  189 (271)
T ss_pred             HHHHHHHHHHhcCCceEEEECCHHHHhccCCCchhHHHHHHHHHHHHHHHHHHhCCEEEEEec
Confidence            3444444443  47999999986553322       1 23345556666655 4999999998

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=94.75  E-value=0.2  Score=33.90  Aligned_cols=50  Identities=24%  Similarity=0.470  Sum_probs=35.3

Q ss_pred             HHHHHHhcCCCEEEEeC----------CCCCCCHHHHHHHHHHHHHHHh----CCceEEEEecC
Q psy858           23 STAMALIGDPPLVFLDE----------PTSGVDPISRHRLWAVLSQIQK----TGQSIVLTSHR   72 (72)
Q Consensus        23 ~ia~~l~~~p~~lllDE----------P~~gld~~~~~~i~~~l~~~~~----~g~til~~~h~   72 (72)
                      .+..|....|.++++||          +.++.|....+.+.+++..+..    .+..+|++||+
T Consensus       230 lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~  293 (398)
T PTZ00454        230 VFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNR  293 (398)
T ss_pred             HHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCC
Confidence            34455667899999999          4456777777778887776531    25678888873

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=94.72  E-value=0.11  Score=35.64  Aligned_cols=61  Identities=16%  Similarity=0.198  Sum_probs=43.0

Q ss_pred             CCCChHHHHHHHHH-----HHHh-cCCC-EEEEe-----------------CC--CCCCCHHHHHHHHHHHHHHHh--CC
Q psy858           12 GRYSGGNKRKLSTA-----MALI-GDPP-LVFLD-----------------EP--TSGVDPISRHRLWAVLSQIQK--TG   63 (72)
Q Consensus        12 ~~lS~G~~qr~~ia-----~~l~-~~p~-~lllD-----------------EP--~~gld~~~~~~i~~~l~~~~~--~g   63 (72)
                      .+-|.++|-+...+     --+. .+-+ ++++|                 ||  +.|+|+.....+.+++.++..  .|
T Consensus       222 ~~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~~ller~~~~~~G  301 (438)
T PRK07721        222 SDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTGTNASG  301 (438)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHHHhcCCCCC
Confidence            44567777654432     2332 3344 57778                 65  679999999999999998863  47


Q ss_pred             c-----eEEEEecC
Q psy858           64 Q-----SIVLTSHR   72 (72)
Q Consensus        64 ~-----til~~~h~   72 (72)
                      .     ||++.+||
T Consensus       302 sIT~~~TVlv~~hd  315 (438)
T PRK07721        302 SITAFYTVLVDGDD  315 (438)
T ss_pred             CeeeEEEEEEECCC
Confidence            5     99999996

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=94.48  E-value=0.07  Score=36.81  Aligned_cols=43  Identities=26%  Similarity=0.339  Sum_probs=34.4

Q ss_pred             cCCCEEEEeC---CCCCCCHHH--HHHHHHHHHHHHhCCceEEEEecC
Q psy858           30 GDPPLVFLDE---PTSGVDPIS--RHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        30 ~~p~~lllDE---P~~gld~~~--~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      .+|+.+++|-   |+.++|...  ++.+..++..+++.|.|+++++|.
T Consensus       129 ~~~~~vVIDSls~l~~~~d~~~~~r~~l~~L~~~Lk~~g~TvLlt~~~  176 (509)
T PRK09302        129 IGAKRVVLDSIEALFSGFSNEAVVRRELRRLFAWLKQKGVTAVITGER  176 (509)
T ss_pred             hCCCEEEECCHHHHHhhccCHHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence            4789999995   556777665  677888888777779999999984

>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.36  E-value=0.19  Score=37.04  Aligned_cols=48  Identities=31%  Similarity=0.405  Sum_probs=36.5

Q ss_pred             CCCChHHHHHHHHHH---HH----h----cCC--CEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy858           12 GRYSGGNKRKLSTAM---AL----I----GDP--PLVFLDEPTSGVDPISRHRLWAVLSQI   59 (72)
Q Consensus        12 ~~lS~G~~qr~~ia~---~l----~----~~p--~~lllDEP~~gld~~~~~~i~~~l~~~   59 (72)
                      ..+||||+++++.-.   +|    +    ..|  ..+|+||.|+--|+.....++..++++
T Consensus       989 ~g~SGGQkekLa~~vLAAsL~Yql~~~g~~~p~f~tVIlDEAF~R~s~~~a~~~i~~f~~f 1049 (1104)
T COG4913         989 QGGSGGQKEKLASYVLAASLSYQLCPDGRTKPLFGTVILDEAFSRSSHVVAGRIIAAFREF 1049 (1104)
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHhCCCCCcCcceeeEeechhhccCCHHHHHHHHHHHHHc
Confidence            458999999886433   32    1    223  369999999999999999998887664

>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP

Probab=94.31  E-value=0.12  Score=30.89  Aligned_cols=51  Identities=25%  Similarity=0.306  Sum_probs=35.5

Q ss_pred             HHHHHHHHh--cCCCEEEEeCCCC--CCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           21 KLSTAMALI--GDPPLVFLDEPTS--GVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        21 r~~ia~~l~--~~p~~lllDEP~~--gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      -...++..+  .+.++++|||-..  .++....+.+.+++.+ +.++..+|++.++
T Consensus        83 ~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~-rp~~~evIlTGr~  137 (159)
T cd00561          83 GWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKA-KPEDLELVLTGRN  137 (159)
T ss_pred             HHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHc-CCCCCEEEEECCC
Confidence            344444444  4579999999765  4566677788888865 4457889988764

This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=94.29  E-value=0.099  Score=30.94  Aligned_cols=49  Identities=16%  Similarity=0.173  Sum_probs=35.7

Q ss_pred             cCCCCChHHHHHHH--HHHHHhc-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy858           10 ESGRYSGGNKRKLS--TAMALIG-DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT   62 (72)
Q Consensus        10 ~~~~lS~G~~qr~~--ia~~l~~-~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~   62 (72)
                      ++..+++|+++++.  +...+-. +++++    |++++|....+.+.+.+.++.++
T Consensus       144 K~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~  195 (196)
T PRK00454        144 KADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE  195 (196)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence            45567899988766  4455443 23333    99999999999999999887654

>PRK06526 transposase; Provisional

Probab=94.17  E-value=0.21  Score=31.87  Aligned_cols=42  Identities=24%  Similarity=0.434  Sum_probs=31.3

Q ss_pred             hcCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858           29 IGDPPLVFLDEPT-SGVDPISRHRLWAVLSQIQKTGQSIVLTSH   71 (72)
Q Consensus        29 ~~~p~~lllDEP~-~gld~~~~~~i~~~l~~~~~~g~til~~~h   71 (72)
                      +.+++++|+||.- ...+......+.+++..-.+ ..++|++|+
T Consensus       157 l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~-~~s~IitSn  199 (254)
T PRK06526        157 LGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYE-RASLIVTSN  199 (254)
T ss_pred             hccCCEEEEcccccCCCCHHHHHHHHHHHHHHHh-cCCEEEEcC
Confidence            4678999999984 45788888889988876333 356777765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	72
1vpl_A	256	Crystal Structure Of Abc Transporter Atp-binding Pr		2e-07
2pcj_A	224	Crystal Structure Of Abc Transporter (Aq_297) From		3e-07
4huq_A	290	Crystal Structure Of A Transporter Length = 290		7e-07
3c41_J	242	Abc Protein Artp In Complex With Amp-PnpMG2+ Length		8e-07
4hlu_D	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		8e-07
2olj_A	263	Abc Protein Artp In Complex With AdpMG2+ Length = 2		1e-06
1b0u_A	262	Atp-Binding Subunit Of The Histidine Permease From		1e-06
3qf4_A	587	Crystal Structure Of A Heterodimeric Abc Transporte		1e-06
3b5w_A	582	Crystal Structure Of Eschericia Coli Msba Length =		3e-06
3b5y_A	582	Crystal Structure Of Msba From Salmonella Typhimuri		3e-06
3gfo_A	275	Structure Of Cbio1 From Clostridium Perfringens: Pa		3e-06
3b5x_A	582	Crystal Structure Of Msba From Vibrio Cholerae Leng		4e-06
1g29_1	372	Malk Length = 372		1e-05
1g6h_A	257	Crystal Structure Of The Adp Conformation Of Mj1267		1e-05
2yz2_A	266	Crystal Structure Of The Abc Transporter In The Cob		1e-05
1g9x_A	257	Characterization Of The Twinning Structure Of Mj126		1e-05
1f3o_A	235	Crystal Structure Of Mj0796 Atp-Binding Cassette Le		1e-05
4hlu_A	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		1e-05
4huq_B	279	Crystal Structure Of A Transporter Length = 279		2e-05
1oxs_C	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		2e-05
1l2t_A	235	Dimeric Structure Of Mj0796, A Bacterial Abc Transp		2e-05
2pmk_A	243	Crystal Structures Of An Isolated Abc-Atpase In Com		2e-05
3b5j_A	243	Crystal Structures Of The S504a Mutant Of An Isolat		2e-05
1mt0_A	241	Atp-Binding Domain Of Haemolysin B From Escherichia		3e-05
2ff7_A	247	The Abc-Atpase Of The Abc-Transporter Hlyb In The A		3e-05
1gaj_A	257	Crystal Structure Of A Nucleotide-Free Atp-Binding		3e-05
2it1_A	362	Structure Of Ph0203 Protein From Pyrococcus Horikos		4e-05
3tif_A	235	Dimeric Structure Of A Post-Hydrolysis State Of The		5e-05
3g60_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		7e-05
3g5u_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		7e-05
2ffb_A	247	The Crystal Structure Of The Hlyb-Nbd E631q Mutant		7e-05
3dhw_C	343	Crystal Structure Of Methionine Importer Metni Leng		7e-05
1oxx_K	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		7e-05
2d62_A	375	Crystal Structure Of Multiple Sugar Binding Transpo		1e-04
2onk_A	240	Abc Transporter Modbc In Complex With Its Binding P		1e-04
3d31_A	348	Modbc From Methanosarcina Acetivorans Length = 348		1e-04
1ji0_A	240	Crystal Structure Analysis Of The Abc Transporter F		1e-04
4f4c_A	1321	The Crystal Structure Of The Multi-Drug Transporter		2e-04
3tui_C	366	Inward Facing Conformations Of The Metni Methionine		2e-04
3tuj_C	366	Inward Facing Conformations Of The Metni Methionine		2e-04
4ayt_A	595	Structure Of The Human Mitochondrial Abc Transporte		2e-04
2hyd_A	578	Multidrug Abc Transporter Sav1866 Length = 578		2e-04
2nq2_C	253	An Inward-Facing Conformation Of A Putative Metal-C		2e-04
1xef_A	241	Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI		3e-04
2ffa_A	247	Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr		3e-04
2ghi_A	260	Crystal Structure Of Plasmodium Yoelii Multidrug Re		5e-04

>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 40/70 (57%)
Query: 2   GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
           GL E        YS G  RKL  A AL+ +P L  LDEPTSG+D ++   +  +L Q  +
Sbjct: 135 GLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ 194
Query: 62  TGQSIVLTSH 71
            G +I+++SH
Sbjct: 195 EGLTILVSSH 204

>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 42/71 (59%)
Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           +GL +   R+    SGG +++++ A AL  +P L+F DEPT  +D  +  R+  +  +I 
Sbjct: 128 LGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKIN 187
Query: 61  KTGQSIVLTSH 71
           + G SIV+ +H
Sbjct: 188 EGGTSIVMVTH 198

>pdb|4HUQ|A Chain A, Crystal Structure Of A Transporter Length = 290

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 6   YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQ 64
           Y  R     SGG  R+++ A  L   P ++ LDEPT+G+DP  R  +  + +++ Q+ G 
Sbjct: 138 YAERSPFELSGGQMRRVAIAGVLAMQPKVLVLDEPTAGLDPQGRQEMMRLFARLHQEQGL 197
Query: 65  SIVLTSHR 72
           +IVL +H+
Sbjct: 198 TIVLVTHQ 205

>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 40/71 (56%)
Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           +GL +  H      SGG  ++++ A AL  +P ++  DEPTS +DP     + +V+ Q+ 
Sbjct: 126 VGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLA 185
Query: 61  KTGQSIVLTSH 71
             G ++V+ +H
Sbjct: 186 NEGMTMVVVTH 196

>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 35/57 (61%)
Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
           SGG K++L+ A  L  D   + LDEP S +DP S+  ++ VL  ++  G+ I+L +H
Sbjct: 142 SGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTH 198

>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 40/71 (56%)
Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           +GL +  H      SGG  ++++ A AL  +P ++  DEPTS +DP     + +V+ Q+ 
Sbjct: 147 VGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLA 206
Query: 61  KTGQSIVLTSH 71
             G ++V+ +H
Sbjct: 207 NEGMTMVVVTH 217

>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
Query: 9   RESGRY----SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQ 64
           R  G+Y    SGG ++++S A AL  +P ++  DEPTS +DP     +  ++ Q+ + G+
Sbjct: 145 RAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGK 204
Query: 65  SIVLTSH 71
           ++V+ +H
Sbjct: 205 TMVVVTH 211

>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 7   RHRESGR-YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQS 65
           R    GR +SGG K++LS A AL+  P ++ LD+ TS VDPI+  R+   L +  K   +
Sbjct: 472 RVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTT 531
Query: 66  IVLT 69
            ++T
Sbjct: 532 FIIT 535

>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
           SGG +++++ A AL+ D P++ LDE TS +D  S   + A L ++QK   S+V+ +HR
Sbjct: 482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVI-AHR 538

>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
           SGG +++++ A AL+ D P++ LDE TS +D  S   + A L ++QK   S+V+ +HR
Sbjct: 482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVI-AHR 538

>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 2   GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
           G+   + + +   S G K++++ A  L+ +P ++ LDEPT+G+DP+    +  +L ++QK
Sbjct: 132 GIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQK 191
Query: 62  T-GQSIVLTSH 71
             G +I++ +H
Sbjct: 192 ELGITIIIATH 202

>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
           SGG +++++ A AL+ D P++ LDE TS +D  S   + A L ++QK  +++++ +HR
Sbjct: 482 SGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHR 538

>pdb|1G29|1 Chain 1, Malk Length = 372

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           +GLTE  +R+    SGG +++++   A++  P +  +DEP S +D   R R+ A L ++Q
Sbjct: 127 LGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQ 186
Query: 61  KT-GQSIVLTSH 71
           +  G + +  +H
Sbjct: 187 RQLGVTTIYVTH 198

>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 40/72 (55%)
Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           + L+    R++G  SGG  + +    AL+ +P ++ +DEP +GV P   H ++  + +++
Sbjct: 141 LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 200
Query: 61  KTGQSIVLTSHR 72
             G + ++  HR
Sbjct: 201 AKGITFLIIEHR 212

>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 36/57 (63%)
Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
           SGG KR+++ A  ++ +P ++ LDEP  G+D   +  L  ++ + +  G++++L SH
Sbjct: 140 SGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISH 196

>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 40/72 (55%)
Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           + L+    R++G  SGG  + +    AL+ +P ++ +DEP +GV P   H ++  + +++
Sbjct: 141 LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 200
Query: 61  KTGQSIVLTSHR 72
             G + ++  HR
Sbjct: 201 AKGITFLIIEHR 212

>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 6   YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQ 64
           + + +  + SGG +++++ A AL  +PP++  DEPT  +D  +  ++  +L ++ ++ G+
Sbjct: 138 FANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGK 197
Query: 65  SIVLTSH 71
           ++V+ +H
Sbjct: 198 TVVVVTH 204

>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 36/57 (63%)
Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
           SGG KR+++ A  ++ +P ++ LDEP  G+D   +  L  ++ + +  G++++L SH
Sbjct: 142 SGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISH 198

>pdb|4HUQ|B Chain B, Crystal Structure Of A Transporter Length = 279

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI- 59
           +G+T +  RE    SGG K++++ A  +   P ++ LDE TS +DP  R  + A++ Q+ 
Sbjct: 128 VGMTSFAQREPSSLSGGQKQRVALAGIVAIAPKILILDEATSMLDPQGRIEMLAIVRQLR 187
Query: 60  QKTGQSIVLTSH 71
           Q+   +++  +H
Sbjct: 188 QQQNLTVISITH 199

>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSH 71
           SGG +++++ A AL+ DP L+ LDEP S +D   R    A++ ++Q + G ++++ SH
Sbjct: 142 SGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSH 199

>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 6   YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQ 64
           + + +  + SGG +++++ A AL  +PP++  D+PT  +D  +  ++  +L ++ ++ G+
Sbjct: 138 FANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGK 197
Query: 65  SIVLTSH 71
           ++V+ +H
Sbjct: 198 TVVVVTH 204

>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
           SGG +++++ A AL+ +P ++  DE TS +D  S H +   + +I K G+++++ +HR
Sbjct: 143 SGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHR 199

>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
           SGG +++++ A AL+ +P ++  DE TS +D  S H +   + +I K G+++++ +HR
Sbjct: 143 SGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHR 199

>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
           SGG +++++ A AL+ +P ++  DE TS +D  S H +   + +I K G+++++ +HR
Sbjct: 141 SGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHR 197

>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
           SGG +++++ A AL+ +P ++  DE TS +D  S H +   + +I K G+++++ +HR
Sbjct: 147 SGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHR 203

>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 40/72 (55%)
Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           + L+    R++G  SGG  + +    AL+ +P ++ +D+P +GV P   H ++  + +++
Sbjct: 141 LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELK 200
Query: 61  KTGQSIVLTSHR 72
             G + ++  HR
Sbjct: 201 AKGITFLIIEHR 212

>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 8   HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSI 66
           +R   + SGG +++++ A AL+ +P ++ LDEP S +D + R  + A L ++QK  G + 
Sbjct: 128 NRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITT 187
Query: 67  VLTSH 71
           V  +H
Sbjct: 188 VYVTH 192

>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 6   YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQ 64
           + + +  + SGG +++++ A AL  +PP++  D+PT  +D  +  ++  +L ++ ++ G+
Sbjct: 138 FANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGK 197
Query: 65  SIVLTSH 71
           ++V+ +H
Sbjct: 198 TVVVVTH 204

>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 12  GRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
            + SGG K++++ A AL+ +P ++ LDE TS +D  S   + A L +  + G++ ++ +H
Sbjct: 525 AQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK-AREGRTTIVIAH 583
Query: 72  R 72
           R
Sbjct: 584 R 584

>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 12  GRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
            + SGG K++++ A AL+ +P ++ LDE TS +D  S   + A L +  + G++ ++ +H
Sbjct: 525 AQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK-AREGRTTIVIAH 583
Query: 72  R 72
           R
Sbjct: 584 R 584

>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
           SGG +++++ A AL+ +P ++  D+ TS +D  S H +   + +I K G+++++ +HR
Sbjct: 147 SGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKICK-GRTVIIIAHR 203

>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI- 59
           +GL +         SGG K++++ A AL  +P ++  DE TS +DP +   +  +L  I 
Sbjct: 128 VGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDIN 187
Query: 60  QKTGQSIVLTSHR 72
           ++ G +I+L +H 
Sbjct: 188 RRLGLTILLITHE 200

>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSH 71
           SG  +++++ A AL+ DP L+ LDEP S +D   R    A++ ++Q + G ++++ SH
Sbjct: 142 SGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSH 199

>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           +GLTE  +R+    SGG +++++   A+I  P +   DEP S +D   R +  A L ++Q
Sbjct: 130 LGLTELLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQ 189
Query: 61  KT-GQSIVLTSH 71
           +  G + +  +H
Sbjct: 190 RQLGVTTIYVTH 201

>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           +G+     R+  R SGG +++++ A AL+  P L+ LDEP S VD  ++  L   L  +Q
Sbjct: 114 LGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQ 173
Query: 61  K 61
           +
Sbjct: 174 R 174

>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVL 68
           SGG +++++ A AL+ +P ++ LDEP S +DP ++     +LS + K  +  VL
Sbjct: 129 SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVL 182

>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 36/69 (52%)
Query: 3   LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT 62
           L E   +  G  SGG ++ L+   AL   P L+  DEP+ G+ PI    ++ V+ +I + 
Sbjct: 129 LKERLKQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQE 188
Query: 63  GQSIVLTSH 71
           G +I+L   
Sbjct: 189 GTTILLVEQ 197

>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
           SGG K++++ A AL+ +P ++ LDE TS +D  S   +   L +  K G++ ++ +HR
Sbjct: 556 SGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK-GRTTIIIAHR 612

>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI- 59
           +GL +         SGG K++++ A AL  +P ++  D+ TS +DP +   +  +L  I 
Sbjct: 151 VGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDIN 210
Query: 60  QKTGQSIVLTSHR 72
           ++ G +I+L +H 
Sbjct: 211 RRLGLTILLITHE 223

>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI- 59
           +GL +         SGG K++++ A AL  +P ++  D+ TS +DP +   +  +L  I 
Sbjct: 151 VGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDIN 210
Query: 60  QKTGQSIVLTSH 71
           ++ G +I+L +H
Sbjct: 211 RRLGLTILLITH 222

>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
           SGG K++++ A AL+ +P ++ LDE TS +D  + + +   L ++   G+++++ +HR
Sbjct: 485 SGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHR 541

>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 13  RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
           + SGG K++LS A   + +PP++ LDE TS +D  S   +   L  + K  ++ ++ +HR
Sbjct: 477 KLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKD-RTTLIVAHR 535

>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI- 59
           + LT    RE    SGG ++ +  A A+  +  L+ LDEPTS +D  ++  + ++L  + 
Sbjct: 116 LNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLA 175
Query: 60  QKTGQSIVLTSHR 72
           Q    ++V T+H+
Sbjct: 176 QSQNMTVVFTTHQ 188

>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
           SGG +++++ A AL+ +P ++  DE TS +D  S H +   + +I K G+++++ + R
Sbjct: 141 SGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAAR 197

>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
           SGG +++++ A AL+ +P ++  DE TS +D  S H +   + +I K G+++++ + R
Sbjct: 147 SGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAAR 203

>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 13  RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
           + SGG +++++ A  L+ DP +V  DE TS +D  + +     +  ++K  +++++ +HR
Sbjct: 155 KLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKN-RTLIIIAHR 213

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	72
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	3e-27
1sgw_A	214	Putative ABC transporter; structural genomics, P p	2e-22
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	1e-18
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	6e-14
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	1e-13
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	5e-13
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	1e-12
1g6h_A	257	High-affinity branched-chain amino acid transport	2e-12
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	2e-12
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	7e-11
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	5e-12
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	4e-11
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	4e-11
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	6e-10
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	6e-11
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	5e-10
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	1e-09
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	2e-08
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	1e-07
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	8e-06
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	3e-07
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	2e-04
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	4e-07
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	5e-07
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	1e-06
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	4e-06
1ji0_A	240	ABC transporter; ATP binding protein, structural g	4e-06
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	7e-06
2ghi_A	260	Transport protein; multidrug resistance protein, M	1e-05
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	3e-05
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	3e-05
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	6e-05
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	9e-05
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	2e-04
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	3e-04
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	4e-04
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	6e-04
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	9e-04
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	9e-04

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256

 Score = 97.6 bits (244), Expect = 3e-27
 Identities = 28/71 (39%), Positives = 40/71 (56%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
            GL E        YS G  RKL  A AL+ +P L  LDEPTSG+D ++   +  +L Q  
Sbjct: 134 AGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS 193

Query: 61  KTGQSIVLTSH 71
           + G +I+++SH
Sbjct: 194 QEGLTILVSSH 204

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214

 Score = 84.5 bits (210), Expect = 2e-22
 Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           + + +   ++ G  S G  R++  A  L+ +  +  LD+P   +D  S+H++   + +I 
Sbjct: 122 VEVLD-LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEIL 180

Query: 61  K-TGQSIVLTSH 71
           K  G  I+ +  
Sbjct: 181 KEKGIVIISSRE 192

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279

 Score = 75.7 bits (187), Expect = 1e-18
 Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI- 59
           +G++    +  G  S G K+++  A AL+G P ++ LDEP +G+D I+R  L ++L  + 
Sbjct: 149 VGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLS 208

Query: 60  -QKTGQSIVLTSHR 72
                 +++  +H 
Sbjct: 209 DSYPTLAMIYVTHF 222

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266

 Score = 63.0 bits (154), Expect = 6e-14
 Identities = 19/71 (26%), Positives = 40/71 (56%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           +    ++ R     SGG KR+++ A  ++ +P ++ LDEP  G+D   +  L  ++ + +
Sbjct: 126 LDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWK 185

Query: 61  KTGQSIVLTSH 71
             G++++L SH
Sbjct: 186 TLGKTVILISH 196

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275

 Score = 62.2 bits (152), Expect = 1e-13
 Identities = 21/72 (29%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
            G+   + + +   S G K++++ A  L+ +P ++ LDEPT+G+DP+    +  +L ++Q
Sbjct: 131 TGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQ 190

Query: 61  K-TGQSIVLTSH 71
           K  G +I++ +H
Sbjct: 191 KELGITIIIATH 202

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253

 Score = 60.3 bits (147), Expect = 5e-13
 Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI- 59
           + LT    RE    SGG ++ +  A A+  +  L+ LDEPTS +D  ++  + ++L  + 
Sbjct: 116 LNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLA 175

Query: 60  QKTGQSIVLTSH 71
           Q    ++V T+H
Sbjct: 176 QSQNMTVVFTTH 187

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263

 Score = 59.3 bits (144), Expect = 1e-12
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 4/72 (5%)

Query: 1   MGLTE-YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI 59
           + L E    R+  + S G    + T++AL   P +V LDEP   VD   RH +   + + 
Sbjct: 115 LKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY 174

Query: 60  QKTGQSIVLTSH 71
            K     +L +H
Sbjct: 175 GKE---GILVTH 183

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257

 Score = 58.7 bits (143), Expect = 2e-12
 Identities = 18/71 (25%), Positives = 39/71 (54%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           + L+    R++G  SGG  + +    AL+ +P ++ +DEP +GV P   H ++  + +++
Sbjct: 141 LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 200

Query: 61  KTGQSIVLTSH 71
             G + ++  H
Sbjct: 201 AKGITFLIIEH 211

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 59.3 bits (144), Expect = 2e-12
 Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           + L           SGG  +KL  A  L  +  L  LD+P+S +D   R+ +   + ++ 
Sbjct: 373 LNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVT 432

Query: 61  KTGQSIVLT-SH 71
           +  +++     H
Sbjct: 433 RERKAVTFIIDH 444

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 54.6 bits (132), Expect = 7e-11
 Identities = 14/72 (19%), Positives = 37/72 (51%), Gaps = 1/72 (1%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           + +T   ++++   SGG  ++L  A +L+ +  +   D+P+S +D   R  +   + ++ 
Sbjct: 126 LNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL 185

Query: 61  KTGQSIVLTSHR 72
           K  + +++  H 
Sbjct: 186 K-NKYVIVVDHD 196

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 58.1 bits (141), Expect = 5e-12
 Identities = 13/72 (18%), Positives = 31/72 (43%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           + L     R+  + SGG  ++ +  M+ + +  +   DEP+S +D   R     ++  + 
Sbjct: 209 LQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLL 268

Query: 61  KTGQSIVLTSHR 72
              + ++   H 
Sbjct: 269 APTKYVICVEHD 280

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 55.4 bits (134), Expect = 4e-11
 Identities = 13/72 (18%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           + + +   +E    SGG  ++++  +AL     +  +DEP++ +D   R     V+ +  
Sbjct: 455 LRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFI 514

Query: 61  K-TGQSIVLTSH 71
               ++  +  H
Sbjct: 515 LHNKKTAFIVEH 526

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 55.4 bits (134), Expect = 4e-11
 Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 1/72 (1%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           +G+ +   R     SGG  ++++ A  L+ D  +  LDEP++ +D   R  +   +  + 
Sbjct: 459 LGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLM 518

Query: 61  -KTGQSIVLTSH 71
            K  ++ ++  H
Sbjct: 519 EKNEKTALVVEH 530

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 51.9 bits (125), Expect = 6e-10
 Identities = 19/72 (26%), Positives = 38/72 (52%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           + L     RE  + SGG  ++++ A AL+      F DEP+S +D   R ++  V+ ++ 
Sbjct: 216 LELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLA 275

Query: 61  KTGQSIVLTSHR 72
             G+++++  H 
Sbjct: 276 NEGKAVLVVEHD 287

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339

 Score = 54.7 bits (131), Expect = 6e-11
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 6/71 (8%)

Query: 7   RHRESGRYSGGNKR------KLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           + R     SGG +       +L+ ++ L G+  L+ LDEPT  +D   R +L  ++ +  
Sbjct: 242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYL 301

Query: 61  KTGQSIVLTSH 71
           K    ++L SH
Sbjct: 302 KKIPQVILVSH 312

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 52.3 bits (126), Expect = 5e-10
 Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           +G+ +   RE    SGG  ++++ A  L+ D  +  LDEP++ +D   R  +   +  + 
Sbjct: 389 LGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLM 448

Query: 61  -KTGQSIVLTSH 71
            K  ++ ++  H
Sbjct: 449 EKNEKTALVVEH 460

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 51.5 bits (124), Expect = 1e-09
 Identities = 19/72 (26%), Positives = 36/72 (50%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           + L     RE    SGG  ++++ A AL+ +    F DEP+S +D   R      + ++ 
Sbjct: 146 LELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLS 205

Query: 61  KTGQSIVLTSHR 72
           + G+S+++  H 
Sbjct: 206 EEGKSVLVVEHD 217

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224

 Score = 47.5 bits (114), Expect = 2e-08
 Identities = 24/71 (33%), Positives = 42/71 (59%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           +GL +   R+    SGG +++++ A AL  +P L+F DEPT  +D  +  R+  +  +I 
Sbjct: 128 LGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKIN 187

Query: 61  KTGQSIVLTSH 71
           + G SIV+ +H
Sbjct: 188 EGGTSIVMVTH 198

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 45.4 bits (107), Expect = 1e-07
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 8   HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIV 67
           H      SGG K KL  A      P L+ LDEPT+ +D  S   L   L + +     ++
Sbjct: 896 HSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG---VI 952

Query: 68  LTSH 71
           + +H
Sbjct: 953 IITH 956

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 40.4 bits (94), Expect = 8e-06
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 4/72 (5%)

Query: 1   MGLTEYRHRES-GRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI 59
            G T+          SGG K KL+ A A++ +  ++ LDEPT+ +D ++   L   L+  
Sbjct: 535 FGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC 594

Query: 60  QKTGQSIVLTSH 71
             T    +  SH
Sbjct: 595 GIT---SITISH 603

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 44.3 bits (105), Expect = 3e-07
 Identities = 20/58 (34%), Positives = 38/58 (65%), Gaps = 1/58 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
           SGG K++++ A AL+ +P ++ LDE TS +D  S   + A L + ++ G++ ++ +HR
Sbjct: 528 SGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKARE-GRTTIVIAHR 584

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 36.6 bits (85), Expect = 2e-04
 Identities = 15/34 (44%), Positives = 23/34 (67%)

Query: 15   SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPIS 48
            SGG K++++ A AL+  P ++ LDE TS +D  S
Sbjct: 1173 SGGQKQRIAIARALVRQPHILLLDEATSALDTES 1206

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148

 Score = 43.2 bits (102), Expect = 4e-07
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 6/69 (8%)

Query: 9   RESGRYSGGNK------RKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT 62
           R     SGG +       +L+ ++ L G+  L+ LDEPT  +D   R +L  ++ +  K 
Sbjct: 53  RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK 112

Query: 63  GQSIVLTSH 71
              ++L SH
Sbjct: 113 IPQVILVSH 121

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249

 Score = 43.7 bits (104), Expect = 5e-07
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 7/78 (8%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMAL-------IGDPPLVFLDEPTSGVDPISRHRLW 53
           + L +   R + + SGG  +++  A  +            L+ LDEP + +D   +  L 
Sbjct: 114 LALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALD 173

Query: 54  AVLSQIQKTGQSIVLTSH 71
            +LS + + G +IV++SH
Sbjct: 174 KILSALSQQGLAIVMSSH 191

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371

 Score = 42.5 bits (100), Expect = 1e-06
 Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 8/73 (10%)

Query: 7   RHRESGRYSGGNKRKLSTAMAL-------IGDPPLVFLDEPTSGVDPISRHRLWAVLSQI 59
                   SGG +  ++ ++ L             + LDEPT  +D   R +L  +  ++
Sbjct: 274 GVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKV 333

Query: 60  QKTGQSIVLTSHR 72
           +   Q I++ +H 
Sbjct: 334 KSIPQMIII-THH 345

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306

 Score = 41.1 bits (97), Expect = 4e-06
 Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
           SGG K++++ A  ++  P ++ LDE TS +D  +   + A L+++     +IV+ +HR
Sbjct: 192 SGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVV-AHR 248

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240

 Score = 40.9 bits (97), Expect = 4e-06
 Identities = 22/66 (33%), Positives = 38/66 (57%)

Query: 3   LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT 62
           L E   +  G  SGG ++ L+   AL+  P L+ +DEP+ G+ PI    ++ V+ +I + 
Sbjct: 129 LKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQE 188

Query: 63  GQSIVL 68
           G +I+L
Sbjct: 189 GTTILL 194

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366

 Score = 40.4 bits (95), Expect = 7e-06
 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 2   GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI-Q 60
           GL +         SGG K++++ A AL  +P ++  D+ TS +DP +   +  +L  I +
Sbjct: 152 GLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINR 211

Query: 61  KTGQSIVLTSH 71
           + G +I+L +H
Sbjct: 212 RLGLTILLITH 222

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260

 Score = 39.9 bits (94), Expect = 1e-05
 Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
           SGG +++++ A  L+ DP +V  DE TS +D  + +     +  ++K    I++ +HR
Sbjct: 157 SGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIII-AHR 213

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240

 Score = 38.7 bits (91), Expect = 3e-05
 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           +G+     R+  R SGG +++++ A AL+  P L+ LDEP S VD  ++  L   L  +Q
Sbjct: 114 LGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQ 173

Query: 61  K-TGQSIVLTSH 71
           +     I+  +H
Sbjct: 174 REFDVPILHVTH 185

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247

 Score = 38.6 bits (91), Expect = 3e-05
 Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
           SGG +++++ A AL+ +P ++  DE TS +D  S H +   + +I K    I++  HR
Sbjct: 147 SGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIA-HR 203

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235

 Score = 37.9 bits (89), Expect = 6e-05
 Identities = 16/58 (27%), Positives = 39/58 (67%), Gaps = 1/58 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSH 71
           SGG +++++ A AL  +PP++  D+PT  +D  +  ++  +L ++ ++ G+++V+ +H
Sbjct: 147 SGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578

 Score = 37.2 bits (87), Expect = 9e-05
 Identities = 15/31 (48%), Positives = 22/31 (70%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVD 45
           SGG K++LS A   + +PP++ LDE TS +D
Sbjct: 479 SGGQKQRLSIARIFLNNPPILILDEATSALD 509

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243

 Score = 36.7 bits (86), Expect = 2e-04
 Identities = 12/31 (38%), Positives = 22/31 (70%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVD 45
           SGG +++L+ A A + +P ++ LDE T+ +D
Sbjct: 141 SGGQRQRLAIARAFLRNPKILMLDEATASLD 171

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582

 Score = 36.0 bits (84), Expect = 3e-04
 Identities = 14/31 (45%), Positives = 23/31 (74%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVD 45
           SGG +++++ A AL+ D P++ LDE TS +D
Sbjct: 482 SGGQRQRVAIARALLRDAPVLILDEATSALD 512

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582

 Score = 35.6 bits (83), Expect = 4e-04
 Identities = 14/31 (45%), Positives = 23/31 (74%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVD 45
           SGG +++++ A AL+ D P++ LDE TS +D
Sbjct: 482 SGGQRQRIAIARALLRDSPILILDEATSALD 512

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271

 Score = 34.8 bits (81), Expect = 6e-04
 Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSHR 72
           SGG ++ ++ A ALI  P L+ LD  TS +D  ++ R+  +L +  +   ++++L + +
Sbjct: 158 SGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQ 216

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598

 Score = 34.5 bits (80), Expect = 9e-04
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 10  ESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVD 45
                S G ++ L+   A + +P ++ LDE TS VD
Sbjct: 488 NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVD 523

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263

 Score = 34.5 bits (80), Expect = 9e-04
 Identities = 17/45 (37%), Positives = 26/45 (57%)

Query: 2   GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDP 46
           GL +  H      SGG  ++++ A AL  +P ++  DEPTS +DP
Sbjct: 148 GLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDP 192

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	72
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.96
1g6h_A	257	High-affinity branched-chain amino acid transport	99.96
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.96
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.96
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.96
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.96
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.96
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.96
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.96
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.96
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.95
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.95
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.95
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.95
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.95
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.95
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.95
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.95
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.95
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.95
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.95
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.95
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.95
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.95
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.95
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.95
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.95
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.94
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.94
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.94
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.94
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.94
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.94
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.93
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.93
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.93
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.93
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	99.93
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.93
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.92
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.92
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.92
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.92
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.92
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.92
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.91
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.91
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.91
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.91
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.91
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.91
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.9
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.9
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.9
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.9
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.88
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.88
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.88
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.88
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.88
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.88
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.87
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.87
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.87
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.86
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.86
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.86
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.86
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.85
3kta_B	173	Chromosome segregation protein SMC; structural mai	99.85
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.85
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.84
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	99.84
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.83
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.8
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	99.78
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.77
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	99.75
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	99.73
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.7
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.64
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.63
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	99.55
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	99.46
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.43
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	99.41
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	99.39
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	99.25
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	99.22
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.18
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.18
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	99.18
2og2_A	359	Putative signal recognition particle receptor; nuc	99.13
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	99.11
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.1
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.09
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	99.05
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	98.93
2cvh_A	220	DNA repair and recombination protein RADB; filamen	98.92
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	98.91
2eyu_A	261	Twitching motility protein PILT; pilus retraction	98.84
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	98.79
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.78
4a74_A	231	DNA repair and recombination protein RADA; hydrola	98.76
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	98.73
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	98.73
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	98.7
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	98.67
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	98.65
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.49
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	98.41
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.39
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	98.37
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	98.35
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	98.33
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	98.27
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	98.22
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	98.18
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	98.17
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.15
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	98.13
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.07
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.96
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	97.95
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.92
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.84
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.7
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	97.63
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	97.55
2r6a_A	454	DNAB helicase, replicative helicase; replication,	97.52
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.52
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.44
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.42
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.39
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	97.26
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	97.26
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.21
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	97.19
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	97.07
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	97.05
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.82
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.79
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	96.65
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	96.51
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.67
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	95.39
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	95.37
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	94.68
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	94.49
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	94.32
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	94.08
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	94.02
2z43_A	324	DNA repair and recombination protein RADA; archaea	93.96
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	93.88
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	93.8
1u94_A	356	RECA protein, recombinase A; homologous recombinat	93.75
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	93.62
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	93.47
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	93.35
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	93.28
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	93.27
4dgh_A	130	Sulfate permease family protein; STAS domain, anio	93.21
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	92.75
2eyu_A	261	Twitching motility protein PILT; pilus retraction	92.75
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	92.72
3bos_A	242	Putative DNA replication factor; P-loop containing	92.58
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	92.56
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	92.4
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	92.07
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	91.94
4dgf_A	135	Sulfate transporter sulfate transporter family PR;	91.65
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	91.53
3oiz_A	99	Antisigma-factor antagonist, STAS; PSI-2, midwest	91.3
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	90.86
3llo_A	143	Prestin; STAS domain, cell shape, glycoprotein, me	90.77
2qgz_A	308	Helicase loader, putative primosome component; str	90.77
3ny7_A	118	YCHM protein, sulfate transporter; fatty acid bios	90.01
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	90.0
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	89.98
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	89.01
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	88.66
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	88.43
1p9r_A	418	General secretion pathway protein E; bacterial typ	88.24
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	88.11
1xp8_A	366	RECA protein, recombinase A; recombination, radior	87.92
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	87.46
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	86.39
2ka5_A	125	Putative anti-sigma factor antagonist TM_1081; ter	86.18
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	85.09
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	85.06
2kln_A	130	Probable sulphate-transport transmembrane protein;	84.75
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	84.6
2chg_A	226	Replication factor C small subunit; DNA-binding pr	83.74
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	83.72
1th8_B	116	Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA,	82.84
1x52_A	124	Pelota homolog, CGI-17; ERF1_3 domain, structural	82.54
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	82.47
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	82.17
3co5_A	143	Putative two-component system transcriptional RES	81.7
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	81.3
1sbo_A	110	Putative anti-sigma factor antagonist TM1442; open	80.82

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.96  E-value=3e-29  Score=154.09  Aligned_cols=72  Identities=33%  Similarity=0.609  Sum_probs=68.5

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+.+..++++.+||||||||+++|+|++.+|+++||||||+|||+.+++.+.+++++++++|.|||++|||
T Consensus       128 ~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd  199 (224)
T 2pcj_A          128 LGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHE  199 (224)
T ss_dssp             TTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             cCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence            477788899999999999999999999999999999999999999999999999999997779999999997

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.96  E-value=4e-29  Score=156.02  Aligned_cols=72  Identities=26%  Similarity=0.581  Sum_probs=68.6

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+++..++++.+||||||||++||+|++.+|+++||||||+|||+.+++.+.+++++++++|.|||++|||
T Consensus       141 ~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd  212 (257)
T 1g6h_A          141 LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHR  212 (257)
T ss_dssp             TTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             cCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence            477788899999999999999999999999999999999999999999999999999987779999999997

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.96  E-value=3.5e-29  Score=157.98  Aligned_cols=72  Identities=28%  Similarity=0.587  Sum_probs=68.4

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~-~~g~til~~~h~   72 (72)
                      +|+++..++++.+||||||||++||+|++.+|+++||||||+|||+.+++.+++++++++ ++|.|||++|||
T Consensus       131 ~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd  203 (275)
T 3gfo_A          131 TGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHD  203 (275)
T ss_dssp             TTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESC
T ss_pred             cCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecC
Confidence            578888999999999999999999999999999999999999999999999999999987 459999999997

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.96  E-value=6.8e-29  Score=155.83  Aligned_cols=72  Identities=31%  Similarity=0.573  Sum_probs=68.6

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+.+..++++.+||||||||++||+|++.+|+++||||||+|||+.+++.++++++++.++|.|||++|||
T Consensus       147 ~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd  218 (263)
T 2olj_A          147 VGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHE  218 (263)
T ss_dssp             TTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCC
Confidence            477788899999999999999999999999999999999999999999999999999987779999999997

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.96  E-value=5.1e-29  Score=156.08  Aligned_cols=72  Identities=29%  Similarity=0.563  Sum_probs=68.4

Q ss_pred             CCCcch-hcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEY-RHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~-~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+.+. .++++.+||||||||++||||++.+|+++||||||+|||+.+++.+.+++++++++|.|||++|||
T Consensus       140 ~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd  212 (262)
T 1b0u_A          140 VGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE  212 (262)
T ss_dssp             TTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSC
T ss_pred             cCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            467777 899999999999999999999999999999999999999999999999999987779999999997

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.96  E-value=5.8e-29  Score=153.77  Aligned_cols=72  Identities=25%  Similarity=0.577  Sum_probs=66.4

Q ss_pred             CCCcch-hcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEY-RHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~-~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +++.+. .++++.+||||||||++||||++.+|+++||||||+|||+..++.+.+++++++++ |.|||++|||
T Consensus       132 ~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd  205 (235)
T 3tif_A          132 AELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD  205 (235)
T ss_dssp             TTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSC
T ss_pred             CCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCC
Confidence            356554 48899999999999999999999999999999999999999999999999998765 9999999997

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.96  E-value=1.4e-28  Score=153.86  Aligned_cols=72  Identities=39%  Similarity=0.572  Sum_probs=68.3

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+++..++++.+||||||||++||+|++.+|+++||||||+|||+.+++.+++++++++++|.|||++||+
T Consensus       134 ~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd  205 (256)
T 1vpl_A          134 AGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHN  205 (256)
T ss_dssp             HCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCC
Confidence            367788899999999999999999999999999999999999999999999999999987779999999997

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.96  E-value=1e-28  Score=160.94  Aligned_cols=72  Identities=29%  Similarity=0.571  Sum_probs=68.4

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+.+..++++.+||||||||++|||||+.+|+++|+||||++||+..++.+++++++++++ |.|||++|||
T Consensus       151 vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHd  223 (366)
T 3tui_C          151 VGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHE  223 (366)
T ss_dssp             HTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESC
T ss_pred             cCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence            37788899999999999999999999999999999999999999999999999999999754 9999999997

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.96  E-value=7.8e-29  Score=153.80  Aligned_cols=72  Identities=32%  Similarity=0.535  Sum_probs=68.0

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+.+..++++.+||||||||+++|||++.+|+++||||||+|||+.+++.++++++++.++ |.|||++|||
T Consensus       114 ~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd  186 (240)
T 2onk_A          114 LGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHD  186 (240)
T ss_dssp             TTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESC
T ss_pred             cCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            47778889999999999999999999999999999999999999999999999999998654 9999999997

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.96  E-value=2e-28  Score=152.86  Aligned_cols=72  Identities=29%  Similarity=0.504  Sum_probs=68.5

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+++..++++.+||||||||++||+|++.+|+++||||||+|||+.+++.+.+++.++.++ |.|||++|||
T Consensus       116 ~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd  188 (253)
T 2nq2_C          116 LNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQ  188 (253)
T ss_dssp             TTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESC
T ss_pred             cCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence            47778889999999999999999999999999999999999999999999999999998776 9999999997

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.95  E-value=2.4e-28  Score=153.19  Aligned_cols=72  Identities=29%  Similarity=0.602  Sum_probs=68.2

Q ss_pred             CCCc--chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLT--EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~--~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|++  +..++++.+||||||||++||+|++.+|+++||||||+|||+.+++.+.+++++++++|.|||++|||
T Consensus       124 ~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd  197 (266)
T 2yz2_A          124 VGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHD  197 (266)
T ss_dssp             TTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             cCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence            4677  78899999999999999999999999999999999999999999999999999987679999999997

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.95  E-value=1.8e-28  Score=151.90  Aligned_cols=70  Identities=31%  Similarity=0.607  Sum_probs=66.6

Q ss_pred             CcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         3 l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +.+..++++.+||||||||++||||++.+|+++||||||+|||+.+++.+++++++++++|.|||++|||
T Consensus       129 l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd  198 (240)
T 1ji0_A          129 LKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQN  198 (240)
T ss_dssp             HHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             HhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence            5667889999999999999999999999999999999999999999999999999987679999999997

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.95  E-value=3.2e-28  Score=153.71  Aligned_cols=72  Identities=29%  Similarity=0.571  Sum_probs=68.1

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceE--EEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSI--VLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~ti--l~~~h~   72 (72)
                      +|+.+..++++.+||||||||++||||++.+|+++||||||+|||+.+++.++++++++.++|.||  |++|||
T Consensus       149 ~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd  222 (279)
T 2ihy_A          149 VGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHF  222 (279)
T ss_dssp             TTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred             cCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecC
Confidence            477788899999999999999999999999999999999999999999999999999987668999  999997

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.95  E-value=3.8e-28  Score=152.53  Aligned_cols=72  Identities=25%  Similarity=0.401  Sum_probs=67.6

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIG------DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~------~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +++.+..++++.+||||||||++||||+++      +|+++||||||+|||+..+..+.+++++++++ |.|||++|||
T Consensus       129 ~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHd  207 (266)
T 4g1u_C          129 TDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHD  207 (266)
T ss_dssp             TTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSC
T ss_pred             cCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcC
Confidence            467788899999999999999999999999      99999999999999999999999999998765 6799999997

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.95  E-value=2.5e-28  Score=151.95  Aligned_cols=71  Identities=21%  Similarity=0.315  Sum_probs=62.6

Q ss_pred             CC-cchhcCcCCC-CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            2 GL-TEYRHRESGR-YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         2 ~l-~~~~~~~~~~-lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      |+ .+..++++.+ ||||||||++||+|++.+|+++||||||+|||+.+++.+.++++++.++|.|||++|||
T Consensus       130 gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd  202 (250)
T 2d2e_A          130 DWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHY  202 (250)
T ss_dssp             TCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSS
T ss_pred             CCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence            56 4678899999 99999999999999999999999999999999999999999999986669999999996

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.95  E-value=5.9e-28  Score=156.86  Aligned_cols=72  Identities=29%  Similarity=0.526  Sum_probs=68.5

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+++..++++.+||||||||++|||||+.+|+++||||||++||+..++.+.+.|+++.++ |.|+|++|||
T Consensus       133 ~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd  205 (355)
T 1z47_A          133 MRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHD  205 (355)
T ss_dssp             TTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSC
T ss_pred             cCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCC
Confidence            57888899999999999999999999999999999999999999999999999999998765 9999999997

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.95  E-value=4.7e-28  Score=157.55  Aligned_cols=72  Identities=33%  Similarity=0.501  Sum_probs=67.1

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~-~~g~til~~~h~   72 (72)
                      +|+++..++++.+||||||||++|||||+.+|+++||||||++||+..+..+++.+.++. +.|.|+|++|||
T Consensus       126 ~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd  198 (359)
T 3fvq_A          126 TGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHD  198 (359)
T ss_dssp             HTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred             cCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            377889999999999999999999999999999999999999999999999998887765 459999999997

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.95  E-value=6e-28  Score=158.01  Aligned_cols=72  Identities=25%  Similarity=0.557  Sum_probs=68.7

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +++.+..++++.+||||||||++|||||+.+|+++||||||++||+..+..+.+.|+++.++ |.|+|++|||
T Consensus       121 ~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd  193 (381)
T 3rlf_A          121 LQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD  193 (381)
T ss_dssp             TTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSC
T ss_pred             cCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence            47888999999999999999999999999999999999999999999999999999999765 9999999997

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.95  E-value=6.9e-28  Score=156.16  Aligned_cols=72  Identities=26%  Similarity=0.506  Sum_probs=68.4

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~   72 (72)
                      +++++..++++.+||||||||++|||||+.+|+++||||||++||+..++.+.+.|+++.+ .|.|+|++|||
T Consensus       115 ~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd  187 (348)
T 3d31_A          115 LKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHD  187 (348)
T ss_dssp             TTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            4788889999999999999999999999999999999999999999999999999999865 49999999997

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.95  E-value=9e-28  Score=156.16  Aligned_cols=72  Identities=26%  Similarity=0.477  Sum_probs=68.4

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+++..++++.+||||||||++|||||+.+|+++||||||++||+..++.+.+.++++.++ |.|+|++|||
T Consensus       121 ~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd  193 (359)
T 2yyz_A          121 LLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHD  193 (359)
T ss_dssp             TTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESC
T ss_pred             cCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence            47888899999999999999999999999999999999999999999999999999998654 9999999997

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.95  E-value=7.9e-28  Score=149.99  Aligned_cols=72  Identities=29%  Similarity=0.511  Sum_probs=68.5

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCC-------EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPP-------LVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~-------~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+++..++++.+||||||||++||+|++.+|+       ++||||||+|||+.+++.+.++++++.++|.|||++|||
T Consensus       114 ~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd  192 (249)
T 2qi9_C          114 LALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHD  192 (249)
T ss_dssp             TTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             cCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            477888899999999999999999999999999       999999999999999999999999987679999999997

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.95  E-value=3.7e-28  Score=148.80  Aligned_cols=71  Identities=21%  Similarity=0.422  Sum_probs=66.6

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+++. ++++.+||||||||+++|+|++.+|+++||||||+|||+.+++.+.+.++++.++|.|||++||+
T Consensus       122 ~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd  192 (214)
T 1sgw_A          122 VEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE  192 (214)
T ss_dssp             TTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS
T ss_pred             cCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            467777 89999999999999999999999999999999999999999999999999987668999999996

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.95  E-value=6.8e-28  Score=156.36  Aligned_cols=72  Identities=28%  Similarity=0.496  Sum_probs=68.4

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+++..++++.+||||||||++|||||+.+|+++||||||++||+..++.+.+.|+++.++ |.|+|++|||
T Consensus       128 ~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd  200 (353)
T 1oxx_K          128 LDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHD  200 (353)
T ss_dssp             TTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESC
T ss_pred             cCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            47888899999999999999999999999999999999999999999999999999998654 9999999997

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.95  E-value=1.3e-27  Score=150.06  Aligned_cols=72  Identities=21%  Similarity=0.371  Sum_probs=65.6

Q ss_pred             CCCc-chhcCcCC-CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLT-EYRHRESG-RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~-~~~~~~~~-~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+. ...++++. +||||||||++|||||+.+|+++||||||+|||+.+++.+++++++++++|.|||++|||
T Consensus       150 ~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd  223 (267)
T 2zu0_C          150 LKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHY  223 (267)
T ss_dssp             TTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSS
T ss_pred             cCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeC
Confidence            4664 46788887 599999999999999999999999999999999999999999999886669999999996

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.95  E-value=1.2e-27  Score=156.13  Aligned_cols=72  Identities=31%  Similarity=0.595  Sum_probs=68.2

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+++..++++.+||||||||++|||||+.+|+++||||||++||+..++.+.+.|+++.++ |.|+|++|||
T Consensus       127 ~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd  199 (372)
T 1g29_1          127 LGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHD  199 (372)
T ss_dssp             HTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESC
T ss_pred             CCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCC
Confidence            36788899999999999999999999999999999999999999999999999999998765 9999999997

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.95  E-value=8.8e-28  Score=156.34  Aligned_cols=72  Identities=31%  Similarity=0.537  Sum_probs=68.4

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+++..++++.+||||||||++|||||+.+|+++||||||++||+..++.+.+.|+++.++ |.|+|++|||
T Consensus       121 ~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd  193 (362)
T 2it1_A          121 LHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHD  193 (362)
T ss_dssp             TTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESC
T ss_pred             cCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence            47888899999999999999999999999999999999999999999999999999998655 9999999997

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.95  E-value=1.3e-27  Score=155.96  Aligned_cols=72  Identities=24%  Similarity=0.486  Sum_probs=68.5

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +++++..++++.+||||||||++|||||+.+|+++||||||++||+..++.+.+.|+++.++ |.|+|++|||
T Consensus       129 ~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd  201 (372)
T 1v43_A          129 LQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHD  201 (372)
T ss_dssp             TTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESC
T ss_pred             cCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            47888899999999999999999999999999999999999999999999999999998765 9999999997

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.94  E-value=3.6e-27  Score=146.65  Aligned_cols=69  Identities=26%  Similarity=0.521  Sum_probs=63.3

Q ss_pred             CcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         3 l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ++...++++.+||||||||++||||++.+|+++||||||+|||+.+++.+++.++++. +|.|||++||+
T Consensus       135 l~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~  203 (247)
T 2ff7_A          135 YNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHR  203 (247)
T ss_dssp             GGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSS
T ss_pred             hhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCC
Confidence            4445566789999999999999999999999999999999999999999999999984 59999999996

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.94  E-value=2.6e-27  Score=148.97  Aligned_cols=71  Identities=25%  Similarity=0.428  Sum_probs=65.7

Q ss_pred             CCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858            2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR   72 (72)
Q Consensus         2 ~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~   72 (72)
                      |++...++++.+||||||||++|||||+.+|+++||||||+|||+.+++.++++|+++.+ .|.|||++|||
T Consensus       145 gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd  216 (271)
T 2ixe_A          145 GYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQ  216 (271)
T ss_dssp             GGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSC
T ss_pred             chhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCC
Confidence            455667889999999999999999999999999999999999999999999999999864 48999999997

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.94  E-value=1.7e-26  Score=144.95  Aligned_cols=69  Identities=30%  Similarity=0.418  Sum_probs=64.4

Q ss_pred             CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|++ +..++++.+||||||||+++|+|++.+|+++||||||+|||+.+++.+.+.++++.+   |||++|||
T Consensus       115 ~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd  184 (263)
T 2pjz_A          115 LKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHE  184 (263)
T ss_dssp             TTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESC
T ss_pred             cCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcC
Confidence            4677 788999999999999999999999999999999999999999999999999988743   99999997

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.94  E-value=2.6e-26  Score=154.96  Aligned_cols=72  Identities=26%  Similarity=0.461  Sum_probs=68.6

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+++..++++.+||||||||++||+||+.+|+++||||||++||+.+++.+.++|++++++|.|||++|||
T Consensus       146 lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd  217 (538)
T 1yqt_A          146 LELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHD  217 (538)
T ss_dssp             TTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             cCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            467778899999999999999999999999999999999999999999999999999997779999999997

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.94  E-value=3.9e-27  Score=145.98  Aligned_cols=67  Identities=25%  Similarity=0.470  Sum_probs=61.9

Q ss_pred             chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ...++++.+||||||||++||||++++|+++||||||+|||+.+++.+++.++++. +|.|||++||+
T Consensus       131 ~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~  197 (243)
T 1mv5_A          131 TEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHR  197 (243)
T ss_dssp             CEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCS
T ss_pred             chhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCC
Confidence            33456678999999999999999999999999999999999999999999999986 69999999996

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.94  E-value=2.9e-26  Score=156.59  Aligned_cols=72  Identities=26%  Similarity=0.480  Sum_probs=68.8

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+++..++++.+||||||||++||+||+.+|+++||||||++||+..+..+.++|+++.++|.|||++|||
T Consensus       216 lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHd  287 (607)
T 3bk7_A          216 LELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD  287 (607)
T ss_dssp             TTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             cCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence            477888999999999999999999999999999999999999999999999999999997779999999997

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.93  E-value=2.5e-26  Score=143.74  Aligned_cols=65  Identities=25%  Similarity=0.517  Sum_probs=60.8

Q ss_pred             hcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            7 RHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         7 ~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      .++++.+||||||||++||||++.+|+++||||||+|||+.+++.+++.++++.+ |.|||++||+
T Consensus       149 ~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~  213 (260)
T 2ghi_A          149 VGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHR  213 (260)
T ss_dssp             ESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSS
T ss_pred             ccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCC
Confidence            3467889999999999999999999999999999999999999999999999864 8999999996

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.93  E-value=3e-26  Score=154.84  Aligned_cols=72  Identities=22%  Similarity=0.320  Sum_probs=67.8

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~   72 (72)
                      +++.+..++++.+||||||||++||+||+.+|+++||||||+|||+.++..++++|+++.+ .|.|||++|||
T Consensus       373 ~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHd  445 (538)
T 3ozx_A          373 LNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHD  445 (538)
T ss_dssp             TTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             cCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            4677788999999999999999999999999999999999999999999999999999875 58999999997

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.93  E-value=5.8e-26  Score=155.19  Aligned_cols=71  Identities=18%  Similarity=0.286  Sum_probs=67.1

Q ss_pred             CCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858            2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR   72 (72)
Q Consensus         2 ~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~   72 (72)
                      ++.+..++++.+||||||||++||+||+.+|+++||||||+|||+.++..+.++|+++.+ .|.|||++|||
T Consensus       456 ~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHd  527 (608)
T 3j16_B          456 RIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHD  527 (608)
T ss_dssp             TSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSC
T ss_pred             CChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            667788999999999999999999999999999999999999999999999999999864 59999999997

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.93  E-value=1.4e-25  Score=143.42  Aligned_cols=69  Identities=23%  Similarity=0.442  Sum_probs=62.6

Q ss_pred             CcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         3 l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ++....+++.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+.|.++.+ ++|+|+|||+
T Consensus       180 l~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~  248 (306)
T 3nh6_A          180 YRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHR  248 (306)
T ss_dssp             GGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCS
T ss_pred             hhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcC
Confidence            34455667789999999999999999999999999999999999999999999998754 7899999996

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=99.93  E-value=1.5e-25  Score=130.94  Aligned_cols=67  Identities=31%  Similarity=0.455  Sum_probs=61.9

Q ss_pred             hhcCcCCCCChHHHHHHHHH------HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            6 YRHRESGRYSGGNKRKLSTA------MALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         6 ~~~~~~~~lS~G~~qr~~ia------~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ..++++.+||||||||+++|      ++++.+|+++||||||+|||+..++.+.+.+.++.++|.||+++||+
T Consensus        50 ~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~  122 (148)
T 1f2t_B           50 GKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHD  122 (148)
T ss_dssp             TEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESC
T ss_pred             cccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEECh
Confidence            35678999999999999876      89999999999999999999999999999999987678999999996

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.5e-25  Score=153.11  Aligned_cols=72  Identities=18%  Similarity=0.361  Sum_probs=68.6

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+++..++++.+||||||||++||+|++.+|+++||||||++||+.++..+.+++++++++|.|||++|||
T Consensus       209 ~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd  280 (608)
T 3j16_B          209 LQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHD  280 (608)
T ss_dssp             HTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSC
T ss_pred             cCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            367788999999999999999999999999999999999999999999999999999998779999999997

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.92  E-value=1.9e-25  Score=150.82  Aligned_cols=72  Identities=22%  Similarity=0.450  Sum_probs=67.6

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~   72 (72)
                      +++.+..++++.+||||||||++||++++.+|+++||||||+|||+.+++.+.++++++.+ .|.|||++|||
T Consensus       389 ~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd  461 (538)
T 1yqt_A          389 LGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD  461 (538)
T ss_dssp             TTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSC
T ss_pred             cCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            4677788999999999999999999999999999999999999999999999999999864 59999999997

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.92  E-value=2.1e-25  Score=150.74  Aligned_cols=71  Identities=20%  Similarity=0.422  Sum_probs=67.4

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+....++++.+||||||||++||+|++.+|+++||||||++||+.++..+.++++++.+ |.|||++|||
T Consensus       126 l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHd  196 (538)
T 3ozx_A          126 LNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHD  196 (538)
T ss_dssp             TTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSC
T ss_pred             cCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeC
Confidence            4677888999999999999999999999999999999999999999999999999999865 9999999997

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.92  E-value=8.7e-26  Score=139.66  Aligned_cols=65  Identities=22%  Similarity=0.385  Sum_probs=59.6

Q ss_pred             hcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHhCCceEEEEecC
Q psy858            7 RHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLS---QIQKTGQSIVLTSHR   72 (72)
Q Consensus         7 ~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~---~~~~~g~til~~~h~   72 (72)
                      .++++.+||||||||+++|||++.+|+++||||||+|||+.+++.+++.+.   ++. +|.|||++||+
T Consensus       121 ~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~  188 (237)
T 2cbz_A          121 IGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHS  188 (237)
T ss_dssp             ESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSC
T ss_pred             ccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecC
Confidence            467889999999999999999999999999999999999999999999985   333 48999999996

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.92  E-value=1.6e-25  Score=153.50  Aligned_cols=66  Identities=27%  Similarity=0.498  Sum_probs=63.7

Q ss_pred             hcCcCCCCChHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            7 RHRESGRYSGGNKRKLSTAMALIGDPP--LVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         7 ~~~~~~~lS~G~~qr~~ia~~l~~~p~--~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      .++++.+||||||||++|||||+++|+  ++||||||+|||+..++.+.+++++++++|.|||+||||
T Consensus       196 ~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd  263 (670)
T 3ux8_A          196 LSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD  263 (670)
T ss_dssp             TTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred             hcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence            688999999999999999999999998  999999999999999999999999998789999999997

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.92  E-value=3.2e-25  Score=151.46  Aligned_cols=72  Identities=21%  Similarity=0.428  Sum_probs=67.6

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~   72 (72)
                      +|+.+..++++.+||||||||++||++|+++|+++||||||+|||+.++..+.++|+++.+ .|.|||++|||
T Consensus       459 ~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd  531 (607)
T 3bk7_A          459 LGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD  531 (607)
T ss_dssp             HTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             cCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            3677788999999999999999999999999999999999999999999999999999864 58999999997

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.92  E-value=3.3e-25  Score=136.43  Aligned_cols=64  Identities=20%  Similarity=0.376  Sum_probs=57.4

Q ss_pred             cCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCceEEEEecC
Q psy858            8 HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVL-SQIQKTGQSIVLTSHR   72 (72)
Q Consensus         8 ~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l-~~~~~~g~til~~~h~   72 (72)
                      ++++.+||||||||+++|||++++|+++||||||+|||+.+++.+++.+ .++. +|.|||++||+
T Consensus       125 ~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~  189 (229)
T 2pze_A          125 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSK  189 (229)
T ss_dssp             CTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCC
T ss_pred             cCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCC
Confidence            3456899999999999999999999999999999999999999999864 4543 48999999996

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.91  E-value=2.9e-25  Score=145.59  Aligned_cols=71  Identities=24%  Similarity=0.457  Sum_probs=64.7

Q ss_pred             CCCcchhcCcCCC-----------CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEE
Q psy858            1 MGLTEYRHRESGR-----------YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLT   69 (72)
Q Consensus         1 ~~l~~~~~~~~~~-----------lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~   69 (72)
                      +++.+..++++.+           ||||||||++|||||+.+|+++||||||++||+..+..+.+.|+++. .+.|+|++
T Consensus       132 ~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~v  210 (390)
T 3gd7_A          132 VGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILC  210 (390)
T ss_dssp             TTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEE
T ss_pred             hCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEE
Confidence            3566778888887           99999999999999999999999999999999999999999998754 48999999


Q ss_pred             ecC
Q psy858           70 SHR   72 (72)
Q Consensus        70 ~h~   72 (72)
                      ||+
T Consensus       211 tHd  213 (390)
T 3gd7_A          211 EAR  213 (390)
T ss_dssp             CSS
T ss_pred             EcC
Confidence            996

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.91  E-value=2e-24  Score=146.38  Aligned_cols=69  Identities=32%  Similarity=0.519  Sum_probs=62.7

Q ss_pred             CcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         3 l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ++....++..+||||||||+++|||++++|+++||||||++||+.+++.+.+.++++.+ |+|+|++||+
T Consensus       470 ~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~  538 (582)
T 3b60_A          470 LDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHR  538 (582)
T ss_dssp             GGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSC
T ss_pred             ccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEecc
Confidence            34445566789999999999999999999999999999999999999999999999864 8999999996

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.91  E-value=2.7e-24  Score=147.49  Aligned_cols=67  Identities=27%  Similarity=0.434  Sum_probs=63.1

Q ss_pred             hhcCcCCCCChHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            6 YRHRESGRYSGGNKRKLSTAMALIGDP---PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p---~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ..++++.+||||||||++|||||+.+|   +++||||||+|||+..+..+.+++++++++|.|||+||||
T Consensus       536 ~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd  605 (670)
T 3ux8_A          536 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHN  605 (670)
T ss_dssp             BTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred             hccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            467899999999999999999999887   5999999999999999999999999998789999999997

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.91  E-value=2.4e-24  Score=146.03  Aligned_cols=69  Identities=32%  Similarity=0.551  Sum_probs=62.3

Q ss_pred             CcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         3 l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ++...+++..+||||||||+++|||++++|++++|||||++||+.+++.+.+.++++.+ |+|+|++||+
T Consensus       470 ~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~  538 (582)
T 3b5x_A          470 LDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHR  538 (582)
T ss_pred             ccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecC
Confidence            33444556789999999999999999999999999999999999999999999998754 8999999996

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.91  E-value=3.8e-24  Score=145.36  Aligned_cols=70  Identities=33%  Similarity=0.567  Sum_probs=63.7

Q ss_pred             CCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         2 ~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      |++...++++.+||||||||+++|||++++|+++||||||++||+.+.+.+.+.++++. +|+|+|++||+
T Consensus       468 g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~  537 (587)
T 3qf4_A          468 GYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQK  537 (587)
T ss_dssp             GGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESC
T ss_pred             chhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecC
Confidence            34455677889999999999999999999999999999999999999999999998874 58999999996

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.90  E-value=2.5e-24  Score=136.61  Aligned_cols=63  Identities=21%  Similarity=0.389  Sum_probs=55.2

Q ss_pred             CcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCceEEEEecC
Q psy858            9 RESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVL-SQIQKTGQSIVLTSHR   72 (72)
Q Consensus         9 ~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l-~~~~~~g~til~~~h~   72 (72)
                      +++.+||||||||++||||++.+|+++||||||+|||+.++..+++.+ .++. +|.|||++||+
T Consensus       155 ~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd  218 (290)
T 2bbs_A          155 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSK  218 (290)
T ss_dssp             ---CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCC
T ss_pred             CccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecC
Confidence            446899999999999999999999999999999999999999999864 4443 48999999996

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.90  E-value=5.8e-24  Score=137.97  Aligned_cols=65  Identities=26%  Similarity=0.481  Sum_probs=61.8

Q ss_pred             cCcCCCCChHHHHHHHHHHHHh------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            8 HRESGRYSGGNKRKLSTAMALI------GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         8 ~~~~~~lS~G~~qr~~ia~~l~------~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ++++.+|||||+||++||+|++      .+|+++||||||+|||+..++.+.+++.++.+.|.|||++||+
T Consensus       274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~  344 (365)
T 3qf7_A          274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHD  344 (365)
T ss_dssp             EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESC
T ss_pred             CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence            5688899999999999999999      7999999999999999999999999999988779999999997

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.90  E-value=7.4e-24  Score=143.60  Aligned_cols=67  Identities=28%  Similarity=0.479  Sum_probs=60.6

Q ss_pred             chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ....++..+||||||||+++|||++++|++++|||||++||+.+.+.+.+.++++. +++|+|++||+
T Consensus       469 t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~  535 (578)
T 4a82_A          469 TEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHR  535 (578)
T ss_dssp             CBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSS
T ss_pred             hhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecC
Confidence            34445667999999999999999999999999999999999999999999998875 47999999996

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.90  E-value=8.4e-24  Score=143.83  Aligned_cols=62  Identities=26%  Similarity=0.501  Sum_probs=58.4

Q ss_pred             cCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           10 ESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        10 ~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ...+||||||||+++|||++++|+++||||||++||+.+.+.+.+.++++. +|+|+|++||+
T Consensus       488 ~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~  549 (598)
T 3qf4_B          488 NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHR  549 (598)
T ss_dssp             HHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCC
T ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecC
Confidence            347899999999999999999999999999999999999999999999875 58999999996

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.88  E-value=9.3e-23  Score=144.11  Aligned_cols=67  Identities=25%  Similarity=0.405  Sum_probs=62.7

Q ss_pred             hhcCcCCCCChHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            6 YRHRESGRYSGGNKRKLSTAMALIGDP---PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p---~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ..++++.+|||||+||++||++|+.+|   +++||||||+|||+...+.+.+.|.++.++|.|||+||||
T Consensus       798 ~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~Hd  867 (916)
T 3pih_A          798 KLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHN  867 (916)
T ss_dssp             BTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred             hccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            357889999999999999999999875   7999999999999999999999999998889999999997

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.88  E-value=5.2e-23  Score=146.08  Aligned_cols=69  Identities=30%  Similarity=0.424  Sum_probs=64.2

Q ss_pred             CCC-cchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGL-TEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l-~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+ +...++++.+||||||||++||++++.+|+++||||||++||+.+++.+.++|++   .|.|||++|||
T Consensus       535 lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHd  604 (986)
T 2iw3_A          535 FGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHD  604 (986)
T ss_dssp             TTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSC
T ss_pred             cCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECC
Confidence            466 3578899999999999999999999999999999999999999999999999987   58999999997

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.88  E-value=8.5e-23  Score=144.67  Aligned_cols=72  Identities=28%  Similarity=0.443  Sum_probs=66.2

Q ss_pred             CCCcc-hhcCcCCCCChHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTE-YRHRESGRYSGGNKRKLSTAMALIGDP---PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~-~~~~~~~~lS~G~~qr~~ia~~l~~~p---~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+.. ..++++.+|||||+||++||++|+.+|   +++||||||+|||+..++.++++|.++.++|.|||++|||
T Consensus       832 ~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHd  907 (972)
T 2r6f_A          832 VGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHN  907 (972)
T ss_dssp             TTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred             cCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCC
Confidence            35655 678899999999999999999999865   9999999999999999999999999998789999999997

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.88  E-value=4.4e-23  Score=145.73  Aligned_cols=71  Identities=27%  Similarity=0.488  Sum_probs=65.6

Q ss_pred             CCcc-hhcCcCCCCChHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            2 GLTE-YRHRESGRYSGGNKRKLSTAMALIGDPP--LVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         2 ~l~~-~~~~~~~~lS~G~~qr~~ia~~l~~~p~--~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      |+.. ..++++.+|||||+||++||++|+++|+  ++||||||+|||+...+.+.++++++++.|.|||+||||
T Consensus       452 gL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd  525 (916)
T 3pih_A          452 GLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHD  525 (916)
T ss_dssp             TCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCC
T ss_pred             CCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            5543 3688999999999999999999999887  999999999999999999999999998779999999997

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.88  E-value=1.1e-22  Score=142.77  Aligned_cols=71  Identities=27%  Similarity=0.464  Sum_probs=65.4

Q ss_pred             CCcc-hhcCcCCCCChHHHHHHHHHHHHhcC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            2 GLTE-YRHRESGRYSGGNKRKLSTAMALIGD---PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         2 ~l~~-~~~~~~~~lS~G~~qr~~ia~~l~~~---p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      |+.. ..++++.+|||||+||++||++|+.+   |+++||||||+|||+..++.+++++.++.++|.|||++|||
T Consensus       718 gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHd  792 (842)
T 2vf7_A          718 GLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHK  792 (842)
T ss_dssp             TCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred             CCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCC
Confidence            4544 35889999999999999999999996   69999999999999999999999999998889999999997

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.87  E-value=2.5e-22  Score=128.91  Aligned_cols=68  Identities=31%  Similarity=0.481  Sum_probs=61.8

Q ss_pred             chhcCcCCCCChHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            5 EYRHRESGRYSGGNKR------KLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         5 ~~~~~~~~~lS~G~~q------r~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ...++++.+|||||||      |+++|++++.+|+++||||||+|||+..+..+.+++.++.++|.+||++||+
T Consensus       240 ~~~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~  313 (339)
T 3qkt_A          240 EGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHD  313 (339)
T ss_dssp             TTEEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESC
T ss_pred             ccCcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECh
Confidence            3457789999999999      6778888899999999999999999999999999999987778899999996

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.87  E-value=2.9e-22  Score=141.95  Aligned_cols=71  Identities=28%  Similarity=0.491  Sum_probs=65.9

Q ss_pred             CCcch-hcCcCCCCChHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            2 GLTEY-RHRESGRYSGGNKRKLSTAMALIGDP--PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         2 ~l~~~-~~~~~~~lS~G~~qr~~ia~~l~~~p--~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      |+... .++.+.+|||||+||++||++|.++|  +++||||||+|||+...+.+++.++++++.|.|||+|+||
T Consensus       492 GL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHd  565 (972)
T 2r6f_A          492 GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD  565 (972)
T ss_dssp             TCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCC
T ss_pred             CCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence            56543 68999999999999999999999985  8999999999999999999999999998789999999997

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.86  E-value=2.7e-22  Score=142.42  Aligned_cols=69  Identities=32%  Similarity=0.430  Sum_probs=61.3

Q ss_pred             CCCcc-h-hcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTE-Y-RHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~-~-~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+.. . .++++.+||||||||++||++++.+|+++||||||+|||+.+...+.+.++++   +.|||++|||
T Consensus       887 lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD  957 (986)
T 2iw3_A          887 LGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHS  957 (986)
T ss_dssp             TTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSC
T ss_pred             cCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECC
Confidence            35653 3 58899999999999999999999999999999999999999999998887653   6799999997

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.86  E-value=5.5e-22  Score=139.32  Aligned_cols=72  Identities=26%  Similarity=0.477  Sum_probs=66.7

Q ss_pred             CCCcch-hcCcCCCCChHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEY-RHRESGRYSGGNKRKLSTAMALIGDP--PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~-~~~~~~~lS~G~~qr~~ia~~l~~~p--~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +|+... .++++.+|||||+||++||++|.++|  +++||||||++||+...+.+.++++.+++.|.|||+|+|+
T Consensus       366 vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHd  440 (842)
T 2vf7_A          366 LGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHD  440 (842)
T ss_dssp             TTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCC
T ss_pred             CCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCC
Confidence            466544 78999999999999999999999999  5999999999999999999999999998789999999997

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.86  E-value=7.6e-22  Score=142.62  Aligned_cols=63  Identities=30%  Similarity=0.563  Sum_probs=58.4

Q ss_pred             CcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            9 RESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         9 ~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ....+||||||||++||||++++|+++||||||++||+.+.+.+.+.+++. .+|+|+|++||+
T Consensus      1167 e~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~ 1229 (1284)
T 3g5u_A         1167 DKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHR 1229 (1284)
T ss_dssp             TTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSC
T ss_pred             CCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecC
Confidence            445789999999999999999999999999999999999999999999875 458999999997

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.86  E-value=1.8e-21  Score=140.65  Aligned_cols=66  Identities=30%  Similarity=0.538  Sum_probs=60.1

Q ss_pred             hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ...+...+||||||||++||||++++|+++||||||++||+.+.+.+.+.++.+. +|+|+|++||+
T Consensus       519 ~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~  584 (1284)
T 3g5u_A          519 LVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHR  584 (1284)
T ss_dssp             CCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSC
T ss_pred             cccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecC
Confidence            3445677999999999999999999999999999999999999999999998764 58999999996

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.85  E-value=2.7e-21  Score=125.67  Aligned_cols=62  Identities=19%  Similarity=0.310  Sum_probs=57.5

Q ss_pred             cCCC-CChHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           10 ESGR-YSGGNKRKLSTAMALIGDP--PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        10 ~~~~-lS~G~~qr~~ia~~l~~~p--~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ++.. +||||+||+++|++++.+|  +++||||||+|||+..++.+.+.|+++. +|.+||+|||+
T Consensus       291 ~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~  355 (415)
T 4aby_A          291 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHL  355 (415)
T ss_dssp             BGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSC
T ss_pred             chhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCc
Confidence            3444 5999999999999999999  9999999999999999999999999987 58999999996

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=99.85  E-value=6.8e-21  Score=113.54  Aligned_cols=66  Identities=18%  Similarity=0.287  Sum_probs=58.0

Q ss_pred             hhcCcCCCCChHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            6 YRHRESGRYSGGNKRKLSTAMALI----GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         6 ~~~~~~~~lS~G~~qr~~ia~~l~----~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ...+.+..||||||||+++|++++    .+|+++||||||+|||+...+.+.++++++.+ +.++|++||+
T Consensus        57 ~~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~  126 (173)
T 3kta_B           57 KDVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLR  126 (173)
T ss_dssp             SSCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSC
T ss_pred             ccccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEec
Confidence            345678899999999999999997    45799999999999999999999999998764 5688999985

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.85  E-value=5.9e-21  Score=121.74  Aligned_cols=66  Identities=23%  Similarity=0.348  Sum_probs=60.1

Q ss_pred             hhcCcCCCCChHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            6 YRHRESGRYSGGNKRKLSTAMALI----GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         6 ~~~~~~~~lS~G~~qr~~ia~~l~----~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ..+.++.+||+|||||++||++++    .+|+++||||||++||+..++.+.++++++. +|.++|++||+
T Consensus       212 ~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~  281 (322)
T 1e69_A          212 RRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHN  281 (322)
T ss_dssp             SCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCC
T ss_pred             cccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECC
Confidence            356678899999999999999997    6889999999999999999999999999874 58899999996

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.84  E-value=2.8e-21  Score=139.99  Aligned_cols=65  Identities=29%  Similarity=0.527  Sum_probs=58.7

Q ss_pred             hcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            7 RHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         7 ~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ......+||||||||++||||++++|+++||||||++||+.+.+.+.+.|++.. .|+|+|+|+|+
T Consensus      1211 vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHR 1275 (1321)
T 4f4c_A         1211 VGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHR 1275 (1321)
T ss_dssp             ETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSS
T ss_pred             ecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccC
Confidence            334557899999999999999999999999999999999999999999998754 48999999995

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=99.84  E-value=4.2e-21  Score=128.67  Aligned_cols=64  Identities=19%  Similarity=0.293  Sum_probs=60.6

Q ss_pred             cCcCCCC-ChHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            8 HRESGRY-SGGNKRKLSTAMALIGDP--PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         8 ~~~~~~l-S~G~~qr~~ia~~l~~~p--~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      .+++.+| ||||+||+++|++++.+|  +++||||||+|||+.++..+.++|+++.+ |.+||+|||+
T Consensus       391 ~~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~  457 (517)
T 4ad8_A          391 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHL  457 (517)
T ss_dssp             CCBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCC
T ss_pred             cccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecC
Confidence            4577888 999999999999999999  99999999999999999999999999877 8999999996

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.83  E-value=8.3e-21  Score=137.53  Aligned_cols=64  Identities=30%  Similarity=0.533  Sum_probs=58.9

Q ss_pred             cCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            8 HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         8 ~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      .....+||||||||++||||++++|+++||||||++||+.+...+.+.+.++. +|+|+|+++|+
T Consensus       549 Ge~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHr  612 (1321)
T 4f4c_A          549 GDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHR  612 (1321)
T ss_dssp             SSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSC
T ss_pred             cCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHh-CCCEEEEEccc
Confidence            34567899999999999999999999999999999999999999999998875 48999999995

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.80  E-value=5.6e-21  Score=112.66  Aligned_cols=62  Identities=13%  Similarity=0.115  Sum_probs=56.4

Q ss_pred             CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH----------------HHHHHHHHHHHHHhCCceEEEEecC
Q psy858           11 SGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPI----------------SRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        11 ~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~----------------~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ....|+|++||+++|++++.+|++++|||||++||+.                .+..+.+.++++.++|.|+|++|||
T Consensus        81 ~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~  158 (171)
T 4gp7_A           81 TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNS  158 (171)
T ss_dssp             CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECS
T ss_pred             CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCC
Confidence            3456999999999999999999999999999999999                6688899988887679999999997

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=99.78  E-value=8.7e-19  Score=115.12  Aligned_cols=65  Identities=20%  Similarity=0.326  Sum_probs=58.9

Q ss_pred             cCcCCCCChHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            8 HRESGRYSGGNKRKLSTAMALI----GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         8 ~~~~~~lS~G~~qr~~ia~~l~----~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      .+++..|||||||++++|++++    .+|+++|||||+++||+..+..+.+.+.++.+++.++|++||+
T Consensus       328 ~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~  396 (430)
T 1w1w_A          328 FKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLK  396 (430)
T ss_dssp             CCCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSC
T ss_pred             ccccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECC
Confidence            3456779999999999999999    5899999999999999999999999999876558899999996

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.77  E-value=1.9e-19  Score=107.24  Aligned_cols=63  Identities=8%  Similarity=-0.027  Sum_probs=56.1

Q ss_pred             hhcCcCCCCChHHHHHHHHHHH-----HhcCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858            6 YRHRESGRYSGGNKRKLSTAMA-----LIGDPPLVFLDE--PTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH   71 (72)
Q Consensus         6 ~~~~~~~~lS~G~~qr~~ia~~-----l~~~p~~lllDE--P~~gld~~~~~~i~~~l~~~~~~g~til~~~h   71 (72)
                      ..++++.+|||||+||+++|++     ++.+|+++++||  ||+++|+..++.+.+.+.+   .+.|+|+++|
T Consensus        69 ~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~---~~~~~i~~~H  138 (178)
T 1ye8_A           69 LVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD---PNVNVVATIP  138 (178)
T ss_dssp             EETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC---TTSEEEEECC
T ss_pred             cccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc---CCCeEEEEEc
Confidence            4567788999999999999996     999999999999  9999999999999888754   4677999986

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=99.75  E-value=3.6e-18  Score=110.67  Aligned_cols=63  Identities=27%  Similarity=0.449  Sum_probs=55.9

Q ss_pred             CcCCCCChHHHHHH------HHHHHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            9 RESGRYSGGNKRKL------STAMALIGD-PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         9 ~~~~~lS~G~~qr~------~ia~~l~~~-p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      .++..+||||+||+      ++|+++..+ |+++||||||+|||+..+..+.+.+.++. .+.+||++||+
T Consensus       276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~  345 (371)
T 3auy_A          276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHH  345 (371)
T ss_dssp             ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESC
T ss_pred             cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEECh
Confidence            46778999999988      567888999 99999999999999999999999998864 35689999996

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=99.73  E-value=2.9e-18  Score=111.47  Aligned_cols=62  Identities=26%  Similarity=0.400  Sum_probs=56.2

Q ss_pred             cCcCC-CCChHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            8 HRESG-RYSGGNKRKLSTAMALI---------GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         8 ~~~~~-~lS~G~~qr~~ia~~l~---------~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ++++. .+|+||+|++++|++|+         .+|+++||||||++||+..++.+.+.+.++.   .|+|++||.
T Consensus       259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~  330 (359)
T 2o5v_A          259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL  330 (359)
T ss_dssp             TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC
T ss_pred             CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec
Confidence            45666 79999999999999999         8999999999999999999999999998753   699999983

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.70  E-value=2.3e-18  Score=114.74  Aligned_cols=65  Identities=18%  Similarity=0.218  Sum_probs=54.4

Q ss_pred             CCcchhcCcCCCCChHHHHHHHHHHH--HhcCCCE----EEEeC-CCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            2 GLTEYRHRESGRYSGGNKRKLSTAMA--LIGDPPL----VFLDE-PTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         2 ~l~~~~~~~~~~lS~G~~qr~~ia~~--l~~~p~~----lllDE-P~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      |+++..+  +.+||||||||+++|++  ++.+|++    +|||| ||++||+. .+.+.+++++   .+.|+++++|+
T Consensus       226 gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~---~~~tviiVth~  297 (460)
T 2npi_A          226 GLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK---LNVNIMLVLCS  297 (460)
T ss_dssp             CSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH---TTCCEEEEECC
T ss_pred             CCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH---hCCCEEEEEcc
Confidence            4555444  77999999999999999  9999999    99999 99999999 5556655544   37899999996

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.64  E-value=1.9e-18  Score=105.24  Aligned_cols=50  Identities=16%  Similarity=0.192  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           17 GNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        17 G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      |||||+++|||++.+|+++||||||+|    ++..+.++++++ ++|.||| +|||
T Consensus       108 Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~~g~tii-vtHd  157 (208)
T 3b85_A          108 VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-GFGSKMV-VTGD  157 (208)
T ss_dssp             EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-CTTCEEE-EEEC
T ss_pred             chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-cCCCEEE-EECC
Confidence            999999999999999999999999999    888899999887 5689999 9997

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.63  E-value=3e-16  Score=105.36  Aligned_cols=69  Identities=10%  Similarity=-0.021  Sum_probs=63.4

Q ss_pred             CcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH-----HHHHHHHHHHHHHhCCceEEEEecC
Q psy858            3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPI-----SRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         3 l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~-----~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +....+.++.+||+||+||+.+++++..+|+++++| ||++||..     .++.+.++++.+++.|.|+|+++|+
T Consensus       343 ~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~  416 (525)
T 1tf7_A          343 LLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTS  416 (525)
T ss_dssp             SEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred             CEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECc
Confidence            345567788899999999999999999999999999 99999999     9999999999988789999999996

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=99.55  E-value=1.1e-14  Score=103.25  Aligned_cols=70  Identities=14%  Similarity=0.138  Sum_probs=54.6

Q ss_pred             CCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHh-CCceEEEEecC
Q psy858            2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLW-AVLSQIQK-TGQSIVLTSHR   72 (72)
Q Consensus         2 ~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~-~~l~~~~~-~g~til~~~h~   72 (72)
                      |+.+...+....+|+||+++..++++ +.+|+++|||||++|+|+.....+. .++..+.+ .|.++|++||+
T Consensus       724 g~~d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~  795 (918)
T 3thx_B          724 GAADNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHY  795 (918)
T ss_dssp             ----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             ChHHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCc
Confidence            34455566778899999999999998 8999999999999999999999887 77777755 59999999996

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=99.46  E-value=3.4e-13  Score=95.93  Aligned_cols=65  Identities=23%  Similarity=0.273  Sum_probs=51.5

Q ss_pred             cCcCCCCChHHHHHHHHHHHH--hcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHh-CCceEEEEecC
Q psy858            8 HRESGRYSGGNKRKLSTAMAL--IGDPPLVFLDEPTSGVDPISRHRL-WAVLSQIQK-TGQSIVLTSHR   72 (72)
Q Consensus         8 ~~~~~~lS~G~~qr~~ia~~l--~~~p~~lllDEP~~gld~~~~~~i-~~~l~~~~~-~g~til~~~h~   72 (72)
                      +.....+|+++.++..+++++  +.+|+++|||||++|+|+.....+ +.++..+.+ .|.++|++||+
T Consensus       716 d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~  784 (934)
T 3thx_A          716 DSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHF  784 (934)
T ss_dssp             -------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESC
T ss_pred             hhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCc
Confidence            345567888888888888888  999999999999999999998887 777777766 49999999996

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.43  E-value=2.1e-15  Score=99.59  Aligned_cols=59  Identities=12%  Similarity=0.140  Sum_probs=52.6

Q ss_pred             CChH--HHHHHHHHHHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----hCC----ceEEEEecC
Q psy858           14 YSGG--NKRKLSTAMALIG----------DPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-----KTG----QSIVLTSHR   72 (72)
Q Consensus        14 lS~G--~~qr~~ia~~l~~----------~p~~lllDEP~~gld~~~~~~i~~~l~~~~-----~~g----~til~~~h~   72 (72)
                      +|+|  |+||+.+|+++..          +|+++++||||+|||+..++.+++.++++.     +.|    .+|++++|+
T Consensus       155 lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~  234 (413)
T 1tq4_A          155 ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKN  234 (413)
T ss_dssp             EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTC
T ss_pred             eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCc
Confidence            9999  9999999999999          999999999999999999999999999874     222    568888874

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=99.41  E-value=4.5e-13  Score=95.91  Aligned_cols=69  Identities=13%  Similarity=0.135  Sum_probs=53.1

Q ss_pred             CcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHhC-CceEEEEecC
Q psy858            3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISR-HRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         3 l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~-~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      ..+...+...++|+++++ ++++++++.+|+++|||||++|+|+... ..++.++..+.++ |.++|++||+
T Consensus       841 ~~d~~~~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~  911 (1022)
T 2o8b_B          841 ASDRIMSGESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHY  911 (1022)
T ss_dssp             ---------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCC
T ss_pred             CHHHHhhchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCC
Confidence            333444455677877765 9999999999999999999999999985 5578899888776 9999999996

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=99.39  E-value=5e-13  Score=83.31  Aligned_cols=66  Identities=17%  Similarity=0.062  Sum_probs=53.8

Q ss_pred             cchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCC--CCCHHHH---HHHHHHHHHHHh-CCceEEEEecC
Q psy858            4 TEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTS--GVDPISR---HRLWAVLSQIQK-TGQSIVLTSHR   72 (72)
Q Consensus         4 ~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~--gld~~~~---~~i~~~l~~~~~-~g~til~~~h~   72 (72)
                      .+..++++..+|+|+.+++   ++++.+|+++++|||++  ++|+...   ..+...|..+.+ .|+|||+++|+
T Consensus       109 ~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~  180 (279)
T 1nlf_A          109 QPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA  180 (279)
T ss_dssp             CCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred             eecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence            3445678889999997765   57888999999999999  9987443   778888888754 59999999995

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=99.25  E-value=2.8e-11  Score=75.72  Aligned_cols=61  Identities=20%  Similarity=0.135  Sum_probs=47.6

Q ss_pred             CCCCChHH-HHHHHHHHHHhcCCCEEEEeCCCC---C---CCH-HHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858           11 SGRYSGGN-KRKLSTAMALIGDPPLVFLDEPTS---G---VDP-ISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus        11 ~~~lS~G~-~qr~~ia~~l~~~p~~lllDEP~~---g---ld~-~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +.++|.++ +|++. ++++..+|+++|+|||++   +   +|. .....+.+.|++++++ |++||+++|+
T Consensus       127 ~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~  196 (296)
T 1cr0_A          127 FAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHL  196 (296)
T ss_dssp             CCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred             CCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEec
Confidence            35688888 66666 999999999999999999   5   455 6667788888888665 9999999995

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=99.22  E-value=1.4e-11  Score=86.32  Aligned_cols=60  Identities=23%  Similarity=0.222  Sum_probs=49.6

Q ss_pred             cCCCCChHHHHHHHHHHHH--hcCCCEEEEeCC---CCCCCHHHH-HHHHHHHHHHHhCCceEEEEecC
Q psy858           10 ESGRYSGGNKRKLSTAMAL--IGDPPLVFLDEP---TSGVDPISR-HRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        10 ~~~~lS~G~~qr~~ia~~l--~~~p~~lllDEP---~~gld~~~~-~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ....+|+|+++++.+++++  +.+|+++|||||   |+++|..+. ..+.+.+.+   .|.++|++||+
T Consensus       632 l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~  697 (765)
T 1ewq_A          632 LAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE---RRAYTLFATHY  697 (765)
T ss_dssp             ---CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH---HTCEEEEECCC
T ss_pred             HHhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCC
Confidence            3456899999999999999  999999999999   888998875 456666654   58999999996

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.18  E-value=1.8e-12  Score=82.43  Aligned_cols=60  Identities=15%  Similarity=0.238  Sum_probs=49.4

Q ss_pred             CCcchhcCcCCCCChHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEec
Q psy858            2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPP--LVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSH   71 (72)
Q Consensus         2 ~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~--~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h   71 (72)
                      |+.+..++++.+||   +||++++++++.+|+  ++++| ||+|+|+..+.      +.+.+ .|.|++++||
T Consensus       193 gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~------~~~~~~~g~t~iiiTh  255 (302)
T 3b9q_A          193 GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLILTK  255 (302)
T ss_dssp             CCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEEEEC
T ss_pred             CCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH------HHHHHhcCCCEEEEeC
Confidence            45555666777888   999999999999999  99999 99999998652      34443 5899999999

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.18  E-value=2.2e-11  Score=78.20  Aligned_cols=50  Identities=16%  Similarity=0.133  Sum_probs=41.5

Q ss_pred             hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           16 GGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        16 ~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ||++||+++++|+..+|+++++|||++.       .+.+.++.+...+.|+++++|+
T Consensus       225 gg~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~~~g~~tvi~t~H~  274 (330)
T 2pt7_A          225 GNITSADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVLCSGHKGTLTTLHA  274 (330)
T ss_dssp             TTBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHHHTTCCCEEEEEEC
T ss_pred             CChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHHhcCCCEEEEEEcc
Confidence            8999999999999999999999999982       3566676665434579999995

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=99.18  E-value=4e-11  Score=84.34  Aligned_cols=62  Identities=15%  Similarity=0.235  Sum_probs=47.8

Q ss_pred             cCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHh-CCceEEEEecC
Q psy858           10 ESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRL-WAVLSQIQK-TGQSIVLTSHR   72 (72)
Q Consensus        10 ~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i-~~~l~~~~~-~g~til~~~h~   72 (72)
                      ....+|+++++ ++.+...+.+|+++|||||++|+|+.....+ +.++..+.+ .|.++|++||+
T Consensus       666 ~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~  729 (800)
T 1wb9_A          666 GRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHY  729 (800)
T ss_dssp             ----CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             hhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCC
Confidence            34567777664 4555566899999999999999999888775 788888877 49999999996

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.13  E-value=7.3e-12  Score=81.49  Aligned_cols=60  Identities=15%  Similarity=0.238  Sum_probs=49.3

Q ss_pred             CCcchhcCcCCCCChHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEec
Q psy858            2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPP--LVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSH   71 (72)
Q Consensus         2 ~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~--~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h   71 (72)
                      |+.+..++++.+||   +||++++++++.+|+  ++++| ||+|+|+..+.      +.+.+ .|.|++++||
T Consensus       250 Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~iiiTh  312 (359)
T 2og2_A          250 GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLILTK  312 (359)
T ss_dssp             CCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEEEES
T ss_pred             CCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEEEEec
Confidence            45555666777888   999999999999999  99999 99999998653      33443 4899999999

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=99.11  E-value=1.7e-10  Score=68.98  Aligned_cols=60  Identities=10%  Similarity=-0.010  Sum_probs=50.9

Q ss_pred             CCChHHHHHHHHHHHHhcCCC--EEEEeCCCCCC--CHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858           13 RYSGGNKRKLSTAMALIGDPP--LVFLDEPTSGV--DPISRHRLWAVLSQIQK-TGQSIVLTSHR   72 (72)
Q Consensus        13 ~lS~G~~qr~~ia~~l~~~p~--~lllDEP~~gl--d~~~~~~i~~~l~~~~~-~g~til~~~h~   72 (72)
                      ..|.++.++...+.....+|+  ++++|||++++  |+.....+.+.++++.+ .|.||++++|+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~  167 (235)
T 2w0m_A          103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQY  167 (235)
T ss_dssp             SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-
T ss_pred             CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence            348888888777777778999  99999999877  99888999999998864 59999999995

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.10  E-value=1.3e-12  Score=81.98  Aligned_cols=58  Identities=12%  Similarity=0.232  Sum_probs=46.4

Q ss_pred             hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858            6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH   71 (72)
Q Consensus         6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h   71 (72)
                      +.+..+.+|||||+||+++||+++.   ++++|||+.|||+..    .++++.+.+. .++|++.|
T Consensus        91 ~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~-~~vI~Vi~  148 (270)
T 3sop_A           91 YEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKV-VNIIPVIA  148 (270)
T ss_dssp             HHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTT-SEEEEEET
T ss_pred             HHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhc-CcEEEEEe
Confidence            3455677899999999999999886   999999999999988    3445555544 78887765

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.09  E-value=5.7e-13  Score=80.02  Aligned_cols=46  Identities=15%  Similarity=0.177  Sum_probs=41.9

Q ss_pred             HHhcCCCEEEEeCCCCCC----CHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858           27 ALIGDPPLVFLDEPTSGV----DPISRHRLWAVLSQIQK-TGQSIVLTSHR   72 (72)
Q Consensus        27 ~l~~~p~~lllDEP~~gl----d~~~~~~i~~~l~~~~~-~g~til~~~h~   72 (72)
                      +++.+|++++||||++++    |+..++.+++.++++.+ .|.|++++|||
T Consensus       137 ~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHd  187 (207)
T 1znw_A          137 VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRR  187 (207)
T ss_dssp             EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSS
T ss_pred             EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCC
Confidence            788999999999999998    78899999999999875 48999999997

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=98.93  E-value=9.2e-11  Score=78.79  Aligned_cols=53  Identities=21%  Similarity=0.309  Sum_probs=44.2

Q ss_pred             HHHHHHHHHh-cCCCEEEEeCCCC-----CCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           20 RKLSTAMALI-GDPPLVFLDEPTS-----GVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        20 qr~~ia~~l~-~~p~~lllDEP~~-----gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ..-.+...+. .+|+++++||||+     ++|+..++.++++++.+++.|.|||+++|+
T Consensus       126 ~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~  184 (525)
T 1tf7_A          126 LIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTER  184 (525)
T ss_dssp             HHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred             HHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence            3444555554 6799999999997     469999999999999997779999999996

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=98.92  E-value=3.5e-09  Score=63.01  Aligned_cols=61  Identities=16%  Similarity=0.119  Sum_probs=45.7

Q ss_pred             CCCChHH--HHHHHHHHHHhcC-CCEEEEeCCCCCCCHHH--------HHHHHHHHHHHHhC-CceEEEEecC
Q psy858           12 GRYSGGN--KRKLSTAMALIGD-PPLVFLDEPTSGVDPIS--------RHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus        12 ~~lS~G~--~qr~~ia~~l~~~-p~~lllDEP~~gld~~~--------~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      ...++++  +++++.+++++.+ |+++++|||++.+|+..        ...+...++++.++ |.++++++|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~  155 (220)
T 2cvh_A           83 FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQV  155 (220)
T ss_dssp             ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECS
T ss_pred             EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeE
Confidence            3455554  5688888899886 99999999999998733        24455556776554 8999999994

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=98.91  E-value=1.3e-09  Score=70.30  Aligned_cols=58  Identities=17%  Similarity=0.097  Sum_probs=46.9

Q ss_pred             ChHHHHHHHHHHHHh-------cCCCEEEEeCCCCCCCHHH------------HHHHHHHHHHHHh-CCceEEEEecC
Q psy858           15 SGGNKRKLSTAMALI-------GDPPLVFLDEPTSGVDPIS------------RHRLWAVLSQIQK-TGQSIVLTSHR   72 (72)
Q Consensus        15 S~G~~qr~~ia~~l~-------~~p~~lllDEP~~gld~~~------------~~~i~~~l~~~~~-~g~til~~~h~   72 (72)
                      |.++.+++.++++++       .+|+++|+||||+++|+..            ...+...|..+.+ .|.|||+++|.
T Consensus       208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~  285 (349)
T 1pzn_A          208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQV  285 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred             hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccc
Confidence            577889999999998       6899999999999999852            3455556666654 48999999994

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=98.84  E-value=1.1e-08  Score=63.74  Aligned_cols=45  Identities=27%  Similarity=0.296  Sum_probs=37.8

Q ss_pred             HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           21 KLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        21 r~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ++++++++..+|+++++|||+   |+.+...+   ++. .+.|.+|++++|+
T Consensus        88 ~~~la~aL~~~p~illlDEp~---D~~~~~~~---l~~-~~~g~~vl~t~H~  132 (261)
T 2eyu_A           88 ADALRAALREDPDVIFVGEMR---DLETVETA---LRA-AETGHLVFGTLHT  132 (261)
T ss_dssp             HHHHHHHHHHCCSEEEESCCC---SHHHHHHH---HHH-HHTTCEEEEEECC
T ss_pred             HHHHHHHHhhCCCEEEeCCCC---CHHHHHHH---HHH-HccCCEEEEEeCc
Confidence            899999999999999999999   88876543   333 3469999999996

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=98.79  E-value=1.1e-11  Score=75.27  Aligned_cols=61  Identities=13%  Similarity=0.090  Sum_probs=51.1

Q ss_pred             CCCChHHHHHHHH-----HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-------CCceEEEEecC
Q psy858           12 GRYSGGNKRKLST-----AMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-------TGQSIVLTSHR   72 (72)
Q Consensus        12 ~~lS~G~~qr~~i-----a~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-------~g~til~~~h~   72 (72)
                      .++||||+||+++     +++++.+|++++||||++++|......+.+.+....+       .+...++++|+
T Consensus       121 ~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~  193 (218)
T 1z6g_A          121 MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDD  193 (218)
T ss_dssp             ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSS
T ss_pred             ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCC
Confidence            4679999999999     8899999999999999999999888888887776532       35677787774

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.78  E-value=3.1e-08  Score=57.82  Aligned_cols=45  Identities=16%  Similarity=0.236  Sum_probs=39.8

Q ss_pred             HhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           28 LIGDPPLVFLDEPTS-GVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        28 l~~~p~~lllDEP~~-gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      .+.+|+++++|||++ ++|++.++.+.+++....++|.++|++||.
T Consensus        97 ~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~  142 (180)
T 3ec2_A           97 TVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY  142 (180)
T ss_dssp             HHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred             HhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence            356899999999985 999999999999998877679999999984

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=98.76  E-value=6.3e-09  Score=62.18  Aligned_cols=59  Identities=15%  Similarity=0.162  Sum_probs=41.7

Q ss_pred             CChHHH-HHHHHHHHHhc-------CCCEEEEeCCCCCCCHH-------H-----HHHHHHHHHHHHh-CCceEEEEecC
Q psy858           14 YSGGNK-RKLSTAMALIG-------DPPLVFLDEPTSGVDPI-------S-----RHRLWAVLSQIQK-TGQSIVLTSHR   72 (72)
Q Consensus        14 lS~G~~-qr~~ia~~l~~-------~p~~lllDEP~~gld~~-------~-----~~~i~~~l~~~~~-~g~til~~~h~   72 (72)
                      .+.+++ +.+..+..++.       +|+++++|||++++|+.       .     ...+...+.++.+ .|.|||+++|.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~  179 (231)
T 4a74_A          100 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQV  179 (231)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred             CChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeec
Confidence            344443 33555555555       89999999999999883       2     2356667777654 49999999994

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=98.73  E-value=3.9e-09  Score=62.41  Aligned_cols=57  Identities=12%  Similarity=0.042  Sum_probs=47.9

Q ss_pred             CcCCCCChHHHHH-HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCce
Q psy858            9 RESGRYSGGNKRK-LSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQS   65 (72)
Q Consensus         9 ~~~~~lS~G~~qr-~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~t   65 (72)
                      .++..+|+|++|+ +..+++++.+|..+++||||+++|......+++.+.++..+|.+
T Consensus       145 nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~  202 (210)
T 1pui_A          145 TKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP  202 (210)
T ss_dssp             ECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred             ecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence            4566789999998 89999999999989999999999999999999999887655544

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=98.73  E-value=6.9e-11  Score=74.91  Aligned_cols=56  Identities=20%  Similarity=0.272  Sum_probs=44.5

Q ss_pred             CcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            9 RESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTS-GVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         9 ~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~-gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +++.++|||+|||+.++++++    ++++||||+ |||+...    ++++.+.+. +.++++++||
T Consensus       109 ~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~D  166 (301)
T 2qnr_A          109 RYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKAD  166 (301)
T ss_dssp             HHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGG
T ss_pred             HHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCC
Confidence            667889999999988888775    999999998 5999874    455555443 7888888886

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=98.70  E-value=6.5e-11  Score=75.59  Aligned_cols=39  Identities=13%  Similarity=0.065  Sum_probs=35.8

Q ss_pred             cCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q psy858            8 HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDP   46 (72)
Q Consensus         8 ~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~   46 (72)
                      +.++..||+||+||+++|++++.+|+++|+|||+..+|+
T Consensus       171 ~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~  209 (312)
T 3aez_A          171 YACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG  209 (312)
T ss_dssp             CEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred             cCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence            456779999999999999999999999999999999864

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=98.67  E-value=5.6e-08  Score=63.07  Aligned_cols=43  Identities=23%  Similarity=0.266  Sum_probs=34.9

Q ss_pred             HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           23 STAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        23 ~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +++++|..+|+++++|||+   |...    .+.+.+..+.|++|++++|+
T Consensus       188 ~La~aL~~~PdvillDEp~---d~e~----~~~~~~~~~~G~~vl~t~H~  230 (356)
T 3jvv_A          188 ALRSALREDPDIILVGEMR---DLET----IRLALTAAETGHLVFGTLHT  230 (356)
T ss_dssp             HHHHHTTSCCSEEEESCCC---SHHH----HHHHHHHHHTTCEEEEEESC
T ss_pred             HHHHHhhhCcCEEecCCCC---CHHH----HHHHHHHHhcCCEEEEEEcc
Confidence            9999999999999999999   5544    33444445679999999995

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=98.65  E-value=1.5e-09  Score=65.00  Aligned_cols=50  Identities=10%  Similarity=-0.029  Sum_probs=38.2

Q ss_pred             cCcCCCCChHHHHHHHH-HH---HHhcCCCEEEEeC--CCCCCCHHHHHHHHHHHH
Q psy858            8 HRESGRYSGGNKRKLST-AM---ALIGDPPLVFLDE--PTSGVDPISRHRLWAVLS   57 (72)
Q Consensus         8 ~~~~~~lS~G~~qr~~i-a~---~l~~~p~~lllDE--P~~gld~~~~~~i~~~l~   57 (72)
                      .++...+|+||++++.. .+   |+..+|+++|+||  |+..+|+...+.+.+++.
T Consensus        78 ~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~  133 (189)
T 2i3b_A           78 GQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS  133 (189)
T ss_dssp             SSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH
T ss_pred             ceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh
Confidence            34555789999988743 43   5789999999999  898999987666666554

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.49  E-value=2.2e-07  Score=53.48  Aligned_cols=44  Identities=11%  Similarity=0.286  Sum_probs=36.2

Q ss_pred             HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCce-EEEEec
Q psy858           27 ALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQS-IVLTSH   71 (72)
Q Consensus        27 ~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~t-il~~~h   71 (72)
                      ++..+|+++++|||+. ++...++.+++++....++|.+ +|++||
T Consensus        79 ~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~  123 (149)
T 2kjq_A           79 DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSE  123 (149)
T ss_dssp             GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEES
T ss_pred             HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECC
Confidence            4567899999999998 6665688899999887777888 888887

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=98.41  E-value=7.4e-12  Score=74.78  Aligned_cols=66  Identities=15%  Similarity=0.081  Sum_probs=54.3

Q ss_pred             hhcCcCCCCChHHH----HHHHHHHHHhcCCCEEEEeCCCCC-------CCHHHHHHHHHHHHHH-HhCCceEEEEec
Q psy858            6 YRHRESGRYSGGNK----RKLSTAMALIGDPPLVFLDEPTSG-------VDPISRHRLWAVLSQI-QKTGQSIVLTSH   71 (72)
Q Consensus         6 ~~~~~~~~lS~G~~----qr~~ia~~l~~~p~~lllDEP~~g-------ld~~~~~~i~~~l~~~-~~~g~til~~~h   71 (72)
                      ..+.++.++|+|++    ||++++++++.+|.++++|||+++       ||+.....+...+.+. .+.|.|++.++|
T Consensus        82 ~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~  159 (211)
T 3asz_A           82 PVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVA  159 (211)
T ss_dssp             CEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             CcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            34456778999974    678889999999999999999999       9999999888888775 345888887776

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.39  E-value=2.4e-08  Score=63.54  Aligned_cols=54  Identities=19%  Similarity=0.167  Sum_probs=38.1

Q ss_pred             CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858           14 YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus        14 lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      ++...+||++++|+++.+|+.++|     .||+.+.+.+.+.++.+.+. |.|++++||+
T Consensus       203 ~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~iivTh~  257 (304)
T 1rj9_A          203 MEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGVIVTKL  257 (304)
T ss_dssp             HHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEEEEECT
T ss_pred             HHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEEEEECC
Confidence            344558999999999999994333     34444444555666666544 8999999995

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=98.37  E-value=5.2e-08  Score=63.00  Aligned_cols=54  Identities=24%  Similarity=0.412  Sum_probs=46.1

Q ss_pred             CcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCc-----eEEEEecC
Q psy858            9 RESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK--TGQ-----SIVLTSHR   72 (72)
Q Consensus         9 ~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~--~g~-----til~~~h~   72 (72)
                      ..+..||+|| |++++|   +.+|++      |+|+|+.....+.+++.++.+  .|.     ||+++|||
T Consensus       167 d~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thd  227 (347)
T 2obl_A          167 DSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDN  227 (347)
T ss_dssp             ETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSC
T ss_pred             hhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCC
Confidence            3567889999 899999   577775      899999999999999998864  477     89999996

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.35  E-value=6.7e-07  Score=56.59  Aligned_cols=43  Identities=12%  Similarity=0.189  Sum_probs=35.7

Q ss_pred             HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           28 LIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        28 l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +..+|+++|+|||++ ||+.++..+.+.+.+.. .+.++|++||+
T Consensus       131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~-~~~~~Il~t~~  173 (354)
T 1sxj_E          131 LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDS  173 (354)
T ss_dssp             ---CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESC
T ss_pred             cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc-CCCEEEEEeCC
Confidence            356899999999999 99999999999998753 47899999985

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=98.33  E-value=7.1e-09  Score=63.47  Aligned_cols=56  Identities=7%  Similarity=0.057  Sum_probs=44.1

Q ss_pred             hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ..+.++..||+|++||+++ ++++.+|+++|+|||....+..        +.++  .+.+|++++|+
T Consensus       109 ~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~--~~~~i~v~th~  164 (245)
T 2jeo_A          109 GKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM--FHLRLFVDTDS  164 (245)
T ss_dssp             TCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT--CSEEEEEECCH
T ss_pred             CCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHh--cCeEEEEECCH
Confidence            3455678899999999987 5888899999999998888764        1222  37899999983

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=98.27  E-value=1.6e-07  Score=62.35  Aligned_cols=52  Identities=27%  Similarity=0.476  Sum_probs=45.2

Q ss_pred             CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---C-Cc-----eEEEEecC
Q psy858           11 SGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK---T-GQ-----SIVLTSHR   72 (72)
Q Consensus        11 ~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~---~-g~-----til~~~h~   72 (72)
                      +..||+|+ ||+++|   +.+|++      |+|+|+.....+.+++.++.+   + |.     ||++++||
T Consensus       256 l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHd  316 (438)
T 2dpy_A          256 LTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDD  316 (438)
T ss_dssp             HHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSC
T ss_pred             HHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCC
Confidence            45689999 999999   788887      999999999999999998765   3 64     89999997

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=98.22  E-value=4e-09  Score=64.47  Aligned_cols=49  Identities=22%  Similarity=0.204  Sum_probs=40.1

Q ss_pred             hhcCcCCCCChHHHHHHHHHHHH-hcCCCEEEEe----CCCCCCCHHHHHHHHHHHHHHHh
Q psy858            6 YRHRESGRYSGGNKRKLSTAMAL-IGDPPLVFLD----EPTSGVDPISRHRLWAVLSQIQK   61 (72)
Q Consensus         6 ~~~~~~~~lS~G~~qr~~ia~~l-~~~p~~lllD----EP~~gld~~~~~~i~~~l~~~~~   61 (72)
                      ..++++.++||    |+   +++ +.+|+++++|    |||+++|+...+.+.+.+.++.+
T Consensus       145 ~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~  198 (246)
T 2bbw_A          145 LSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD  198 (246)
T ss_dssp             HHTEEEETTTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred             HHcCCCcCCCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHH
Confidence            34566778888    44   667 9999999999    99999999999888888877643

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=98.18  E-value=8.1e-09  Score=65.97  Aligned_cols=36  Identities=33%  Similarity=0.358  Sum_probs=33.6

Q ss_pred             CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH
Q psy858           11 SGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLW   53 (72)
Q Consensus        11 ~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~   53 (72)
                      +..||||||||   |||++++|+++|    |++||+.+.+.+.
T Consensus       198 g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~  233 (305)
T 2v9p_A          198 GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYL  233 (305)
T ss_dssp             TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGG
T ss_pred             ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHH
Confidence            67899999999   999999999999    9999999988876

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=98.17  E-value=6e-06  Score=49.49  Aligned_cols=43  Identities=21%  Similarity=0.280  Sum_probs=29.9

Q ss_pred             cCCCEEEEeCCCCCCCHH-------H-----HHHHHHHHHHHHhC-CceEEEEecC
Q psy858           30 GDPPLVFLDEPTSGVDPI-------S-----RHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus        30 ~~p~~lllDEP~~gld~~-------~-----~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      .+|+++++|||++.+|+.       .     ...+...+.++.++ |.|||+++|.
T Consensus       118 ~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~  173 (243)
T 1n0w_A          118 SRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQV  173 (243)
T ss_dssp             SCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC--
T ss_pred             CCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeee
Confidence            579999999999999875       3     23455555555544 9999999993

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.15  E-value=2.1e-07  Score=61.60  Aligned_cols=53  Identities=9%  Similarity=0.219  Sum_probs=37.5

Q ss_pred             CChHHHHHHHHHHHHhcCCC---EEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858           14 YSGGNKRKLSTAMALIGDPP---LVFLDEPT-SGVDPISRHRLWAVLSQIQKTGQSIVLTSH   71 (72)
Q Consensus        14 lS~G~~qr~~ia~~l~~~p~---~lllDEP~-~gld~~~~~~i~~~l~~~~~~g~til~~~h   71 (72)
                      ++.+++++++++++++.+|+   ++++|||| .++|+...    .+++.+. .+.++|++.|
T Consensus       119 ~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~-~~v~iIlVin  175 (418)
T 2qag_C          119 FEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLH-EKVNIIPLIA  175 (418)
T ss_dssp             HHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHT-TTSEEEEEEE
T ss_pred             HHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHh-ccCcEEEEEE
Confidence            34566677889999999999   99999999 69999874    3444444 3677777765

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=98.13  E-value=8.4e-08  Score=61.02  Aligned_cols=48  Identities=13%  Similarity=0.212  Sum_probs=40.4

Q ss_pred             CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           13 RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        13 ~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ++|+|++||+..+++++++|+++  |||         +.+.+.++++. .+.+|+++||+
T Consensus       141 ~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~  188 (318)
T 1nij_A          141 QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHG  188 (318)
T ss_dssp             HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSS
T ss_pred             hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC-CCCeEEEeccc
Confidence            68999999998888888888876  888         67778887764 58999999994

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.07  E-value=4.5e-06  Score=57.23  Aligned_cols=43  Identities=14%  Similarity=0.217  Sum_probs=36.4

Q ss_pred             cCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHHhC--CceEEEEecC
Q psy858           30 GDPPLVFLDEP------TSGVDPISRHRLWAVLSQIQKT--GQSIVLTSHR   72 (72)
Q Consensus        30 ~~p~~lllDEP------~~gld~~~~~~i~~~l~~~~~~--g~til~~~h~   72 (72)
                      ..|+++++|||      |+|+|+..++.+.+++..+.++  +.++++++|+
T Consensus       145 ~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~  195 (608)
T 3szr_A          145 DVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSN  195 (608)
T ss_dssp             SSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESS
T ss_pred             CCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEecc
Confidence            46999999999      9999999999999999997543  6788888885

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.96  E-value=1.5e-06  Score=56.00  Aligned_cols=59  Identities=8%  Similarity=-0.098  Sum_probs=43.5

Q ss_pred             CCChHHHHHHHHHHHHh-cCCCEEEEeC---CC------CCCCHHHHHHHHHHHHHHHh-CCceEEEEec
Q psy858           13 RYSGGNKRKLSTAMALI-GDPPLVFLDE---PT------SGVDPISRHRLWAVLSQIQK-TGQSIVLTSH   71 (72)
Q Consensus        13 ~lS~G~~qr~~ia~~l~-~~p~~lllDE---P~------~gld~~~~~~i~~~l~~~~~-~g~til~~~h   71 (72)
                      .+|+|++++..++++.. .+|++++|||   |+      .++|+..+..+.+.+.++.+ .|.+|++++|
T Consensus       258 ~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde  327 (365)
T 1lw7_A          258 CIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIES  327 (365)
T ss_dssp             HHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEEC
T ss_pred             HHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCC
Confidence            45566677777777664 6999999999   65      58899999999999988754 3889999887

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=97.95  E-value=1.7e-06  Score=57.19  Aligned_cols=59  Identities=20%  Similarity=0.213  Sum_probs=45.1

Q ss_pred             cCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858            8 HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS   70 (72)
Q Consensus         8 ~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~   70 (72)
                      +.++.++|+|++|+++++++++..|.++++    +.+|......+..+...+.+.+.+++++|
T Consensus       247 ~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~~~~~l~~~l~~~g~~vi~iS  305 (416)
T 1udx_A          247 DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEEAVKALADALAREGLAVLPVS  305 (416)
T ss_dssp             SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHHHHHHHHHHHHTTTSCEEECC
T ss_pred             cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHHHHHHHHHHHHhcCCeEEEEE
Confidence            455677999999999999999999999999    89998776434333333334577888776

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.92  E-value=2.7e-05  Score=50.57  Aligned_cols=45  Identities=27%  Similarity=0.276  Sum_probs=34.9

Q ss_pred             HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           21 KLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        21 r~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +.+++.++..+|+++++|||+   |+...   ...++. ...|++++.++|+
T Consensus       199 ~~~l~~~L~~~pd~illdE~~---d~e~~---~~~l~~-~~~g~~vi~t~H~  243 (372)
T 2ewv_A          199 ADALRAALREDPDVIFVGEMR---DLETV---ETALRA-AETGHLVFGTLHT  243 (372)
T ss_dssp             HHHHHHHTTSCCSEEEESCCC---SHHHH---HHHHHH-HTTTCEEEECCCC
T ss_pred             HHHHHHHhhhCcCEEEECCCC---CHHHH---HHHHHH-HhcCCEEEEEECc
Confidence            468999999999999999999   66553   333443 3458999999985

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.84  E-value=3.1e-05  Score=50.93  Aligned_cols=43  Identities=14%  Similarity=0.196  Sum_probs=32.7

Q ss_pred             cCCCEEEEeCCCCCCCHHHH------------HHHHHHHHHHHhC-CceEEEEecC
Q psy858           30 GDPPLVFLDEPTSGVDPISR------------HRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus        30 ~~p~~lllDEP~~gld~~~~------------~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      .+|+++++|||++.++....            ..+...|++++++ |.|||+++|.
T Consensus       272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv  327 (400)
T 3lda_A          272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV  327 (400)
T ss_dssp             SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred             cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence            57999999999999986432            5567777777655 9999999994

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.70  E-value=2.3e-07  Score=58.61  Aligned_cols=40  Identities=15%  Similarity=0.135  Sum_probs=32.2

Q ss_pred             cCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q psy858            8 HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPI   47 (72)
Q Consensus         8 ~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~   47 (72)
                      ..+..++||||+||++++++...+|+++|+|||++++|+.
T Consensus       129 p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~  168 (290)
T 1odf_A          129 PKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI  168 (290)
T ss_dssp             CCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred             ccCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence            3455688999999999873333389999999999999984

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=97.63  E-value=2e-05  Score=55.42  Aligned_cols=63  Identities=10%  Similarity=0.005  Sum_probs=48.4

Q ss_pred             CcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCceEEEE-ec
Q psy858            9 RESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTS-GVDPISRHRLWAVLSQIQKTGQSIVLT-SH   71 (72)
Q Consensus         9 ~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~-gld~~~~~~i~~~l~~~~~~g~til~~-~h   71 (72)
                      ..+..+|+|+.++..++..++.+++++|+|||.. ++|......+...+........+++++ ||
T Consensus       186 ~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~  250 (773)
T 2xau_A          186 TILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATL  250 (773)
T ss_dssp             CSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCS
T ss_pred             CCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccc
Confidence            3455678999999999999999999999999996 999877666666665544445666664 54

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=97.55  E-value=0.00031  Score=47.39  Aligned_cols=60  Identities=20%  Similarity=0.361  Sum_probs=44.4

Q ss_pred             hcCcCCCCChHHHHHHHHHHHHh--c---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEE
Q psy858            7 RHRESGRYSGGNKRKLSTAMALI--G---------------DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLT   69 (72)
Q Consensus         7 ~~~~~~~lS~G~~qr~~ia~~l~--~---------------~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~   69 (72)
                      ..+..+..||||+|...++.+.+  .               .-+++++||. +-+|....+.++++++++   |.=+|++
T Consensus       373 ~s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliia  448 (483)
T 3euj_A          373 MRAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIA  448 (483)
T ss_dssp             EECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEE
T ss_pred             eecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEE
Confidence            34457789999999655554322  1               3368999999 999999999999999864   5555655


Q ss_pred             e
Q psy858           70 S   70 (72)
Q Consensus        70 ~   70 (72)
                      +
T Consensus       449 t  449 (483)
T 3euj_A          449 A  449 (483)
T ss_dssp             E
T ss_pred             C
Confidence            4

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=97.52  E-value=0.00051  Score=45.41  Aligned_cols=58  Identities=9%  Similarity=0.037  Sum_probs=42.4

Q ss_pred             CCCChHHHHHHHHHHHHh--cCCCEEEEeCCCCCCC--------HHHHHHHHHHHHHHHhC-CceEEEEec
Q psy858           12 GRYSGGNKRKLSTAMALI--GDPPLVFLDEPTSGVD--------PISRHRLWAVLSQIQKT-GQSIVLTSH   71 (72)
Q Consensus        12 ~~lS~G~~qr~~ia~~l~--~~p~~lllDEP~~gld--------~~~~~~i~~~l~~~~~~-g~til~~~h   71 (72)
                      ..+|.++.+  +.++.+.  .+|+++++|+++...+        ......+...|+.++++ |++|++++|
T Consensus       294 ~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sq  362 (454)
T 2r6a_A          294 PSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQ  362 (454)
T ss_dssp             TTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred             CCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence            467888876  4555555  6799999999987663        23345566677777655 999999998

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.52  E-value=0.00033  Score=45.21  Aligned_cols=52  Identities=13%  Similarity=0.280  Sum_probs=35.3

Q ss_pred             HHHHHHHHHhcC--CCEEEEeCCCCCCC----------H---HHHHHHHHHHHHH----HhCCceEEEEec
Q psy858           20 RKLSTAMALIGD--PPLVFLDEPTSGVD----------P---ISRHRLWAVLSQI----QKTGQSIVLTSH   71 (72)
Q Consensus        20 qr~~ia~~l~~~--p~~lllDEP~~gld----------~---~~~~~i~~~l~~~----~~~g~til~~~h   71 (72)
                      +-+.++++++..  |+++++||+++.+.          +   ...+.+.+.++++    .+.|++||+++|
T Consensus       126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh  196 (349)
T 2zr9_A          126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINE  196 (349)
T ss_dssp             HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred             HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEec
Confidence            456677777655  99999999999883          2   1222344444444    345999999998

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.44  E-value=0.00049  Score=41.06  Aligned_cols=43  Identities=19%  Similarity=0.207  Sum_probs=30.9

Q ss_pred             cCCCEEEEeCCCCCC--CHHHHHHHHHHHHHH-HhCCceEEEEecC
Q psy858           30 GDPPLVFLDEPTSGV--DPISRHRLWAVLSQI-QKTGQSIVLTSHR   72 (72)
Q Consensus        30 ~~p~~lllDEP~~gl--d~~~~~~i~~~l~~~-~~~g~til~~~h~   72 (72)
                      .+|+++++|+|+..+  |+...+.+...+.++ ++.|.+|++++|.
T Consensus       127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~  172 (247)
T 2dr3_A          127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQV  172 (247)
T ss_dssp             HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred             hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            579999999999877  553344444444444 4569999999984

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.42  E-value=1.2e-05  Score=46.80  Aligned_cols=54  Identities=9%  Similarity=0.019  Sum_probs=39.7

Q ss_pred             cCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEE
Q psy858            8 HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLT   69 (72)
Q Consensus         8 ~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~   69 (72)
                      +.++..+|+|++|++.++|++.++|+++        +|+...+.+++.+..+...+..++.+
T Consensus       104 ~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~~~~~~~i~t  157 (191)
T 1zp6_A          104 ARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLGAFEHHVLPV  157 (191)
T ss_dssp             CSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCGGGGGGEEEC
T ss_pred             CCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccCcccccEEEC
Confidence            4456689999999999999999998865        58888887877776553333334433

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.39  E-value=8.5e-07  Score=52.28  Aligned_cols=52  Identities=12%  Similarity=0.077  Sum_probs=36.1

Q ss_pred             CCChHHHHHHHHHHHHhcCCCEE-------EEeCCC---CCCCHHHHHHHHHHHHHHHhCCc
Q psy858           13 RYSGGNKRKLSTAMALIGDPPLV-------FLDEPT---SGVDPISRHRLWAVLSQIQKTGQ   64 (72)
Q Consensus        13 ~lS~G~~qr~~ia~~l~~~p~~l-------llDEP~---~gld~~~~~~i~~~l~~~~~~g~   64 (72)
                      .|||||+||+++||+++.+|++.       .=|.|.   -.+|....+.+.+++.+...+|.
T Consensus       103 glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~~i~~~~~~~~  164 (171)
T 2f1r_A          103 GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEFILSLLREGG  164 (171)
T ss_dssp             SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHHHHHHHHTC--
T ss_pred             CcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHHHHHHHHhccC
Confidence            49999999999999999998763       224443   12344556778888876655654

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=97.26  E-value=0.0009  Score=44.94  Aligned_cols=57  Identities=25%  Similarity=0.334  Sum_probs=39.8

Q ss_pred             hHHHHHHHHHHHHhcCCCEEEEeCCC----------CCCCHHHHHHHHHHHHHHH----hCCceEEEEecC
Q psy858           16 GGNKRKLSTAMALIGDPPLVFLDEPT----------SGVDPISRHRLWAVLSQIQ----KTGQSIVLTSHR   72 (72)
Q Consensus        16 ~G~~qr~~ia~~l~~~p~~lllDEP~----------~gld~~~~~~i~~~l~~~~----~~g~til~~~h~   72 (72)
                      ++++.|-.+.++....|.++++||+.          .|.|+...+.+..++..+-    ..+..||.+||.
T Consensus        93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~  163 (476)
T 2ce7_A           93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNR  163 (476)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESC
T ss_pred             cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCC
Confidence            56678888999999999999999983          3566666666666666552    236777777763

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=97.26  E-value=0.00099  Score=42.68  Aligned_cols=61  Identities=13%  Similarity=0.169  Sum_probs=45.2

Q ss_pred             cCcCCCCChHHHHHHHHHHHHhcCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858            8 HRESGRYSGGNKRKLSTAMALIGDPPLVFLD-EPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS   70 (72)
Q Consensus         8 ~~~~~~lS~G~~qr~~ia~~l~~~p~~lllD-EP~~gld~~~~~~i~~~l~~~~~~g~til~~~   70 (72)
                      +.....+++++++.+. +.+...++-++++| +|..++|......+.+.+..... +..++++.
T Consensus       226 ~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~  287 (357)
T 2e87_A          226 DRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVI  287 (357)
T ss_dssp             SSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEE
T ss_pred             ccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEE
Confidence            3455678999988765 44445666788999 99999999988887777766433 67777776

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.21  E-value=0.00056  Score=41.42  Aligned_cols=39  Identities=18%  Similarity=0.244  Sum_probs=33.1

Q ss_pred             HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           25 AMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        25 a~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +...+..++++|||     ||+.++..+++.+.    ++.+|++++|+
T Consensus       101 v~~~l~~G~illLD-----LD~~~~~~i~~~l~----~~~tI~i~th~  139 (219)
T 1s96_A          101 IEQVLATGVDVFLD-----IDWQGAQQIRQKMP----HARSIFILPPS  139 (219)
T ss_dssp             HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT----TCEEEEEECSS
T ss_pred             HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc----CCEEEEEECCC
Confidence            34556678999999     99999999998765    58999999996

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=97.19  E-value=0.0031  Score=39.65  Aligned_cols=54  Identities=13%  Similarity=0.126  Sum_probs=40.5

Q ss_pred             ChHHHHHHHHHHHHhcCCCEEEEeCC-CCCCCHHHHHHHHHHHHHHHhCCceEEEE
Q psy858           15 SGGNKRKLSTAMALIGDPPLVFLDEP-TSGVDPISRHRLWAVLSQIQKTGQSIVLT   69 (72)
Q Consensus        15 S~G~~qr~~ia~~l~~~p~~lllDEP-~~gld~~~~~~i~~~l~~~~~~g~til~~   69 (72)
                      +..+.++.+++.+...+++++|+||| +.++|......+..+..... ...+++++
T Consensus       164 ~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~-~~~~~lv~  218 (295)
T 1ls1_A          164 SPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLG-PDEVLLVL  218 (295)
T ss_dssp             CHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHC-CSEEEEEE
T ss_pred             CHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcC-CCEEEEEE
Confidence            34455688888888899999999999 99999988888887766542 34444433

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=97.07  E-value=0.0011  Score=42.76  Aligned_cols=55  Identities=15%  Similarity=0.284  Sum_probs=43.0

Q ss_pred             CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-C-CceEEEEec
Q psy858           12 GRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-T-GQSIVLTSH   71 (72)
Q Consensus        12 ~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~-g~til~~~h   71 (72)
                      ..||.++.+++..|...+.+++++|.|+|...+     ..+...++.+.+ . |..+|++.|
T Consensus       108 g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si-----~~i~~~ir~l~~~~gg~~lIVIDy  164 (338)
T 4a1f_A          108 GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRI-----EQIRLQLRKLKSQHKELGIAFIDY  164 (338)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCH-----HHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcH-----HHHHHHHHHHHHhcCCCCEEEEec
Confidence            479999999999999999999999999986542     355556666543 4 788888864

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.05  E-value=0.00039  Score=46.23  Aligned_cols=50  Identities=10%  Similarity=0.082  Sum_probs=44.3

Q ss_pred             HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCceEEEEec
Q psy858           22 LSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQ-IQKTGQSIVLTSH   71 (72)
Q Consensus        22 ~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~-~~~~g~til~~~h   71 (72)
                      +.++++|..+.+++++|||+..|.+.....+.+.+++ +...|.+|++++.
T Consensus       167 ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~  217 (427)
T 2qag_B          167 LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT  217 (427)
T ss_dssp             HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred             HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence            7899999999999999999999999999999999986 6667999888764

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.82  E-value=0.00077  Score=43.27  Aligned_cols=30  Identities=20%  Similarity=0.363  Sum_probs=22.4

Q ss_pred             CCCChHHHHHHHHHHHH---hc--CCCEEEEeCCC
Q psy858           12 GRYSGGNKRKLSTAMAL---IG--DPPLVFLDEPT   41 (72)
Q Consensus        12 ~~lS~G~~qr~~ia~~l---~~--~p~~lllDEP~   41 (72)
                      ..+|+|++||.++++++   ..  ++.++++|||+
T Consensus       295 ~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~  329 (365)
T 1lw7_A          295 LRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS  329 (365)
T ss_dssp             ------CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             CcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence            35899999999999999   76  89999999996

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.79  E-value=0.00099  Score=42.35  Aligned_cols=31  Identities=19%  Similarity=0.314  Sum_probs=27.4

Q ss_pred             CCCChHHHHHH---HHHHHHhcCCCEEEEeCCCC
Q psy858           12 GRYSGGNKRKL---STAMALIGDPPLVFLDEPTS   42 (72)
Q Consensus        12 ~~lS~G~~qr~---~ia~~l~~~p~~lllDEP~~   42 (72)
                      ...|+|+.+++   ++++++..+|+++|+|+|..
T Consensus       164 ~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~  197 (306)
T 1vma_A          164 SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR  197 (306)
T ss_dssp             CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred             ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence            35688999998   89999999999999999975

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=96.65  E-value=0.0044  Score=40.89  Aligned_cols=42  Identities=17%  Similarity=0.376  Sum_probs=34.6

Q ss_pred             CCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           31 DPPLVFLDEPTSGVDP-ISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        31 ~p~~lllDEP~~gld~-~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +++++++||+....+. ..++.+...+..+.+.|..+|++||+
T Consensus       194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~  236 (440)
T 2z4s_A          194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR  236 (440)
T ss_dssp             TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence            8999999999876654 67778888888877778899998874

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=96.51  E-value=6.5e-06  Score=48.06  Aligned_cols=54  Identities=11%  Similarity=-0.009  Sum_probs=33.9

Q ss_pred             ChHHHHHHHHHH------HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           15 SGGNKRKLSTAM------ALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        15 S~G~~qr~~ia~------~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      |+|+++++.++.      ++..+++...+|   .++|+...+. ++.+..+.+.+.++|.+||.
T Consensus        96 s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d---~~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~  155 (189)
T 2bdt_A           96 AKVDDVEIRFIILWTNREELLRRDALRKKD---EQMGERCLEL-VEEFESKGIDERYFYNTSHL  155 (189)
T ss_dssp             HHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEEECSSS
T ss_pred             hcccCCCeEEEEEeCCHHHHHHHHHhcccc---ccCCHHHHHH-HHHHhhcCCCccEEEeCCCC
Confidence            445544544444      566666655566   3889988888 88887775557899999884

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.67  E-value=0.029  Score=35.30  Aligned_cols=42  Identities=14%  Similarity=0.109  Sum_probs=32.7

Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCceEEEEecC
Q psy858           30 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK---TGQSIVLTSHR   72 (72)
Q Consensus        30 ~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~---~g~til~~~h~   72 (72)
                      .+|.++++||+... |......+..++..+..   .+.++|+++|+
T Consensus       124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~  168 (389)
T 1fnn_A          124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHN  168 (389)
T ss_dssp             TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESS
T ss_pred             CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECC
Confidence            45789999999776 88888888887766554   57888888874

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=95.39  E-value=0.01  Score=34.38  Aligned_cols=36  Identities=19%  Similarity=0.266  Sum_probs=32.3

Q ss_pred             HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy858           21 KLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQ   58 (72)
Q Consensus        21 r~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~   58 (72)
                      ....+++++.+|++.++|  |+++|....+.+++.+.+
T Consensus       153 ~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~  188 (191)
T 1oix_A          153 PTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT  188 (191)
T ss_dssp             CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence            467899999999999999  999999999999988865

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=95.37  E-value=0.037  Score=34.86  Aligned_cols=53  Identities=19%  Similarity=0.344  Sum_probs=40.0

Q ss_pred             CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-Cce--EEEEec
Q psy858           14 YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQS--IVLTSH   71 (72)
Q Consensus        14 lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~t--il~~~h   71 (72)
                      ||.++++++..|...+.++++++.|+|...     ...+...++++.++ |..  +|++.|
T Consensus       134 l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~~~i~~~i~~l~~~~~~~~~lVVID~  189 (315)
T 3bh0_A          134 FASEDWGKLSMAIGEISNSNINIFDKAGQS-----VNYIWSKTRQTKRKNPGKRVIVMIDY  189 (315)
T ss_dssp             HCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----HHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----HHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence            888999999999998889999999998643     33455556666544 667  888754

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=94.68  E-value=0.029  Score=35.29  Aligned_cols=34  Identities=18%  Similarity=0.212  Sum_probs=24.3

Q ss_pred             HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy858           21 KLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQ   58 (72)
Q Consensus        21 r~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~   58 (72)
                      +.+++  .+.+++++|+|  |+|+|+.....+.++...
T Consensus       174 ~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~~  207 (296)
T 2px0_A          174 QQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKET  207 (296)
T ss_dssp             HHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHHH
T ss_pred             HHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHHH
Confidence            44444  45899999999  889998776666655443

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=94.49  E-value=0.046  Score=35.55  Aligned_cols=27  Identities=15%  Similarity=0.213  Sum_probs=23.1

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHH
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMAL   28 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l   28 (72)
                      +|+.++.+..+.++| |++||+++++++
T Consensus       302 ~gl~~f~~~~~~~lS-G~~~r~ala~gl  328 (358)
T 2rcn_A          302 LGHCKYRDCKHDADP-GCAIREAVENGA  328 (358)
T ss_dssp             TTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred             cCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence            356677888999999 999999999875

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=94.32  E-value=0.1  Score=32.49  Aligned_cols=43  Identities=14%  Similarity=0.237  Sum_probs=32.3

Q ss_pred             hcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858           29 IGDPPLVFLDEPTS-GVDPISRHRLWAVLSQIQKTGQSIVLTSH   71 (72)
Q Consensus        29 ~~~p~~lllDEP~~-gld~~~~~~i~~~l~~~~~~g~til~~~h   71 (72)
                      ..+++++++||+.. .-+...++.+...+....+.+..++++++
T Consensus        96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~  139 (324)
T 1l8q_A           96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASD  139 (324)
T ss_dssp             HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred             hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            35699999999855 33457788888888877667777777765

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=94.08  E-value=0.079  Score=33.88  Aligned_cols=46  Identities=7%  Similarity=-0.026  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEec
Q psy858           19 KRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSH   71 (72)
Q Consensus        19 ~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h   71 (72)
                      .+.-.+++++..++.++++|.++.       +.+.+.++.+.+ .+.+++++||
T Consensus       231 ~eL~~i~ral~~de~llvLDa~t~-------~~~~~~~~~~~~~~~it~iilTK  277 (328)
T 3e70_C          231 DEMKKIARVTKPNLVIFVGDALAG-------NAIVEQARQFNEAVKIDGIILTK  277 (328)
T ss_dssp             HHHHHHHHHHCCSEEEEEEEGGGT-------THHHHHHHHHHHHSCCCEEEEEC
T ss_pred             HHHHHHHHHhcCCCCEEEEecHHH-------HHHHHHHHHHHHhcCCCEEEEeC
Confidence            344457888887777788885554       345555666653 4899999998

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=94.02  E-value=0.22  Score=30.42  Aligned_cols=31  Identities=26%  Similarity=0.323  Sum_probs=24.7

Q ss_pred             ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q psy858           15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVD   45 (72)
Q Consensus        15 S~G~~qr~~ia~~l~~~p~~lllDEP~~gld   45 (72)
                      ++++..+..+..+...+|.++++||+.+..+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~  127 (297)
T 3b9p_A           97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLS  127 (297)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEEETGGGTSB
T ss_pred             hHHHHHHHHHHHHHHcCCcEEEeccHHHhcc
Confidence            4566777788888888999999999976544

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=93.96  E-value=0.075  Score=33.50  Aligned_cols=52  Identities=13%  Similarity=0.222  Sum_probs=33.5

Q ss_pred             HHHHHHHHHh---cCCCEEEEeCCCCCCCH--------HH----HHHHHHHHHHHHhC-CceEEEEec
Q psy858           20 RKLSTAMALI---GDPPLVFLDEPTSGVDP--------IS----RHRLWAVLSQIQKT-GQSIVLTSH   71 (72)
Q Consensus        20 qr~~ia~~l~---~~p~~lllDEP~~gld~--------~~----~~~i~~~l~~~~~~-g~til~~~h   71 (72)
                      +.+..++.++   .+++++++|+.++-...        ..    ...+...|..++++ +.+||++.|
T Consensus       189 ~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq  256 (324)
T 2z43_A          189 AIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQ  256 (324)
T ss_dssp             HHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred             HHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcc
Confidence            4566666666   57899999998875432        11    23344444455443 899999987

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=93.88  E-value=0.089  Score=33.83  Aligned_cols=50  Identities=10%  Similarity=0.075  Sum_probs=36.2

Q ss_pred             hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           16 GGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        16 ~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ++...+..++.++..+|+.+++||+..       ..+.+.+..+.....+++.++|.
T Consensus       237 ~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~g~~~~l~t~H~  286 (361)
T 2gza_A          237 APVTAATLLRSCLRMKPTRILLAELRG-------GEAYDFINVAASGHGGSITSCHA  286 (361)
T ss_dssp             --CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHHTTCCSCEEEEEC
T ss_pred             cccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHhcCCCeEEEEECC
Confidence            555678899999999999999999986       34556666654333467888884

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=93.80  E-value=0.038  Score=35.28  Aligned_cols=46  Identities=20%  Similarity=0.419  Sum_probs=38.8

Q ss_pred             CCCChHHHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy858           12 GRYSGGNKRKLSTAMALIG------DPPLVFLDEPTSGVDPISRHRLWAVLSQIQK   61 (72)
Q Consensus        12 ~~lS~G~~qr~~ia~~l~~------~p~~lllDEP~~gld~~~~~~i~~~l~~~~~   61 (72)
                      ..+|+|+++++..+++++.      .|+++.    ++++|......+++.+.++..
T Consensus       209 ~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          209 ERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence            4578999999999998887      577765    899999999999999887643

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=93.75  E-value=0.33  Score=31.29  Aligned_cols=52  Identities=10%  Similarity=0.224  Sum_probs=32.3

Q ss_pred             HHHHHHHHHh--cCCCEEEEeCCCCCCCHH-------------HHHHHHHHHHHH----HhCCceEEEEec
Q psy858           20 RKLSTAMALI--GDPPLVFLDEPTSGVDPI-------------SRHRLWAVLSQI----QKTGQSIVLTSH   71 (72)
Q Consensus        20 qr~~ia~~l~--~~p~~lllDEP~~gld~~-------------~~~~i~~~l~~~----~~~g~til~~~h   71 (72)
                      +...+++.++  .+++++++|+++.-....             ..+.+.+.++.+    .+.+++||+++|
T Consensus       128 ~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq  198 (356)
T 1u94_A          128 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ  198 (356)
T ss_dssp             HHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred             HHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEec
Confidence            3445555553  679999999998766421             112334444443    334899999887

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=93.62  E-value=0.11  Score=33.10  Aligned_cols=52  Identities=15%  Similarity=0.148  Sum_probs=32.6

Q ss_pred             HHHHHHHHHh----cCCCEEEEeCCCCCCCHH--------H----HHHHHHHHHHHHhC-CceEEEEec
Q psy858           20 RKLSTAMALI----GDPPLVFLDEPTSGVDPI--------S----RHRLWAVLSQIQKT-GQSIVLTSH   71 (72)
Q Consensus        20 qr~~ia~~l~----~~p~~lllDEP~~gld~~--------~----~~~i~~~l~~~~~~-g~til~~~h   71 (72)
                      +.+..++.++    .+++++++|+.++-....        .    ...+...|..++++ +.+||+++|
T Consensus       204 ~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq  272 (343)
T 1v5w_A          204 ELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQ  272 (343)
T ss_dssp             HHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred             HHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEee
Confidence            3344444444    568999999998765332        1    23344445555544 899999987

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=93.47  E-value=0.12  Score=33.15  Aligned_cols=43  Identities=21%  Similarity=0.237  Sum_probs=35.9

Q ss_pred             cCCCEEEEeCCCCCC---CHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           30 GDPPLVFLDEPTSGV---DPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        30 ~~p~~lllDEP~~gl---d~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ..|.++++||--.-+   ++...+.+.++++..++.|..++++||+
T Consensus       261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~  306 (392)
T 4ag6_A          261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQN  306 (392)
T ss_dssp             CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESC
T ss_pred             CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCC
Confidence            347899999987666   4778888999999888889999999985

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=93.35  E-value=0.064  Score=30.94  Aligned_cols=36  Identities=19%  Similarity=0.241  Sum_probs=31.0

Q ss_pred             HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy858           22 LSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI   59 (72)
Q Consensus        22 ~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~   59 (72)
                      ...+++++.+|++.++|  ++++|....+.+++.+.+.
T Consensus       130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~  165 (199)
T 2f9l_A          130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTE  165 (199)
T ss_dssp             HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHH
Confidence            34588899999999999  9999999999988888764

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=93.28  E-value=0.0099  Score=40.37  Aligned_cols=45  Identities=20%  Similarity=0.391  Sum_probs=30.0

Q ss_pred             HHhcCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHH----hCCceEEEEecC
Q psy858           27 ALIGDPP-LVFLDEPTSGVDPISRHRLWAVLSQIQ----KTGQSIVLTSHR   72 (72)
Q Consensus        27 ~l~~~p~-~lllDEP~~gld~~~~~~i~~~l~~~~----~~g~til~~~h~   72 (72)
                      ++...|. ++++||+...++.. ...+.+.+..+.    +.|.+++++||+
T Consensus       292 ~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQr  341 (512)
T 2ius_A          292 VLKKEPYIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQR  341 (512)
T ss_dssp             BCCCCCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESC
T ss_pred             ccccCCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecC
Confidence            3455677 79999999888733 233444444442    338899999985

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=93.27  E-value=0.045  Score=32.89  Aligned_cols=52  Identities=17%  Similarity=0.205  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHh--cCCCEEEEeCCCC--CCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858           19 KRKLSTAMALI--GDPPLVFLDEPTS--GVDPISRHRLWAVLSQIQKTGQSIVLTSH   71 (72)
Q Consensus        19 ~qr~~ia~~l~--~~p~~lllDEP~~--gld~~~~~~i~~~l~~~~~~g~til~~~h   71 (72)
                      +..+..++..+  ...+++||||...  .++......+.+++.+ +-++..+|+++.
T Consensus       106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~-Rp~~~~vIlTGr  161 (196)
T 1g5t_A          106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA-RPGHQTVIITGR  161 (196)
T ss_dssp             HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT-SCTTCEEEEECS
T ss_pred             HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh-CcCCCEEEEECC
Confidence            34455555666  4578999999754  2333344457777754 334778888765

>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*

Probab=93.21  E-value=0.53  Score=25.60  Aligned_cols=43  Identities=14%  Similarity=0.268  Sum_probs=37.4

Q ss_pred             HhcCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858           28 LIGDPPLVFLD-EPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS   70 (72)
Q Consensus        28 l~~~p~~lllD-EP~~gld~~~~~~i~~~l~~~~~~g~til~~~   70 (72)
                      +..+++.+++| .....+|..+...+.++.+++.+.|..+.++.
T Consensus        45 ~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~   88 (130)
T 4dgh_A           45 IQETPQILILRLKWVPFMDITGIQTLEEMIQSFHKRGIKVLISG   88 (130)
T ss_dssp             SSSCCSEEEEECTTCCCCCHHHHHHHHHHHHHHHTTTCEEEEEC
T ss_pred             hccCCCEEEEECCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence            34678899999 78999999999999999999888888888764

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=92.75  E-value=0.00014  Score=43.12  Aligned_cols=52  Identities=8%  Similarity=0.044  Sum_probs=35.5

Q ss_pred             CCChHHHHHHHHH-HHHhcCCCEEEEeCCC-----------CCCCHHHHHHHHHHHHHHHhCCc
Q psy858           13 RYSGGNKRKLSTA-MALIGDPPLVFLDEPT-----------SGVDPISRHRLWAVLSQIQKTGQ   64 (72)
Q Consensus        13 ~lS~G~~qr~~ia-~~l~~~p~~lllDEP~-----------~gld~~~~~~i~~~l~~~~~~g~   64 (72)
                      ..|+|++|+++.+ ++++.++.++++|||.           ..+|......+...++...+.|.
T Consensus       111 ~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~vd~~~~~~~~R~~~R~~~~g~  174 (208)
T 3c8u_A          111 DIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRLEVPMADLEARLVQRWLDHGL  174 (208)
T ss_dssp             TEEEEEEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEECCCHHHHHHHHHHHHHHTTC
T ss_pred             cCCCCCceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEEeCCHHHHHHHHHHHHHhcCC
Confidence            4688999999887 7888888888899985           23455555555555555433344

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=92.75  E-value=2.2e-05  Score=48.78  Aligned_cols=54  Identities=13%  Similarity=0.107  Sum_probs=39.0

Q ss_pred             CCChHHHHHHHHHHHHhcCCCE--EEEeCCCCCCCHHHH---------HHHHHHHHHHHhCCceEEEE
Q psy858           13 RYSGGNKRKLSTAMALIGDPPL--VFLDEPTSGVDPISR---------HRLWAVLSQIQKTGQSIVLT   69 (72)
Q Consensus        13 ~lS~G~~qr~~ia~~l~~~p~~--lllDEP~~gld~~~~---------~~i~~~l~~~~~~g~til~~   69 (72)
                      .+|+|  ||+++++++..+|++  +|+||.++.+|...+         ....+.+.. ..+|.|.+.+
T Consensus       172 ~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~-~~~g~t~~~~  236 (261)
T 2eyu_A          172 PKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKL-YKQGLITLED  236 (261)
T ss_dssp             CCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHH-HHTTSSCHHH
T ss_pred             ecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHH-HHcCCCCHHH
Confidence            46778  899999999999999  999999999987632         223444433 3457665443

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=92.72  E-value=0.015  Score=39.73  Aligned_cols=46  Identities=13%  Similarity=0.263  Sum_probs=39.3

Q ss_pred             CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy858           12 GRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQ   58 (72)
Q Consensus        12 ~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~   58 (72)
                      ..+++|++|++..+.....++.++++||... |++..+..+...+.+
T Consensus       182 g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~  227 (604)
T 3k1j_A          182 GGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE  227 (604)
T ss_dssp             --CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred             CCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence            5688899999888888899999999999887 899999988888864

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=92.58  E-value=0.11  Score=30.29  Aligned_cols=42  Identities=7%  Similarity=0.301  Sum_probs=28.6

Q ss_pred             cCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhCCce-EEEEec
Q psy858           30 GDPPLVFLDEPTSG-VDPISRHRLWAVLSQIQKTGQS-IVLTSH   71 (72)
Q Consensus        30 ~~p~~lllDEP~~g-ld~~~~~~i~~~l~~~~~~g~t-il~~~h   71 (72)
                      .++.++++||...- -+......+..++......+.. +|++++
T Consensus       103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~  146 (242)
T 3bos_A          103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSAS  146 (242)
T ss_dssp             GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEES
T ss_pred             cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcC
Confidence            56899999996443 2334477788888776655655 777765

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=92.56  E-value=1.3  Score=28.59  Aligned_cols=52  Identities=13%  Similarity=0.151  Sum_probs=31.8

Q ss_pred             HHHHHHHHHh--cCCCEEEEeCCCCCCCH----------------HHHHHHHHHHHHHHhC-CceEEEEec
Q psy858           20 RKLSTAMALI--GDPPLVFLDEPTSGVDP----------------ISRHRLWAVLSQIQKT-GQSIVLTSH   71 (72)
Q Consensus        20 qr~~ia~~l~--~~p~~lllDEP~~gld~----------------~~~~~i~~~l~~~~~~-g~til~~~h   71 (72)
                      +.+.+++.++  ..|+++++|+-++-...                .....++..|..+.++ +.+||++.|
T Consensus       126 ~~l~~~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inq  196 (356)
T 3hr8_A          126 QALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQ  196 (356)
T ss_dssp             HHHHHHHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEE
T ss_pred             HHHHHHHHHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEee
Confidence            3445556554  56899999987665531                1122333444455544 899999887

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=92.40  E-value=0.1  Score=32.06  Aligned_cols=44  Identities=20%  Similarity=0.384  Sum_probs=27.2

Q ss_pred             HhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858           28 LIGDPPLVFLDEPTS-GVDPISRHRLWAVLSQIQKTGQSIVLTSH   71 (72)
Q Consensus        28 l~~~p~~lllDEP~~-gld~~~~~~i~~~l~~~~~~g~til~~~h   71 (72)
                      +..+|+++|+||+-. ..+.......++-+......|..++.++|
T Consensus        81 L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N  125 (228)
T 2r8r_A           81 LKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN  125 (228)
T ss_dssp             HHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred             HhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence            446899999999764 23322222233333444556888888876

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=92.07  E-value=0.00022  Score=44.42  Aligned_cols=48  Identities=17%  Similarity=0.178  Sum_probs=36.6

Q ss_pred             hcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCC------------CCCHHHHHHHHHHH
Q psy858            7 RHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTS------------GVDPISRHRLWAVL   56 (72)
Q Consensus         7 ~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~------------gld~~~~~~i~~~l   56 (72)
                      .++.+.+||||++|++.+++|+.++|+++  ||++.            --|...+..+++.+
T Consensus       131 ~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~  190 (274)
T 2x8a_A          131 VNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTI  190 (274)
T ss_dssp             HHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred             HHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence            34456679999999999999999999964  98753            23666777776654

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=91.94  E-value=0.079  Score=30.66  Aligned_cols=43  Identities=19%  Similarity=0.308  Sum_probs=24.9

Q ss_pred             hcCCCEEEEeCCCC-CCCHHHHHHHH-HHHHHHHhCCceEEEEec
Q psy858           29 IGDPPLVFLDEPTS-GVDPISRHRLW-AVLSQIQKTGQSIVLTSH   71 (72)
Q Consensus        29 ~~~p~~lllDEP~~-gld~~~~~~i~-~~l~~~~~~g~til~~~h   71 (72)
                      +.+++++++||+-. .++.+.+..+. .++......+..+|++|+
T Consensus       113 ~~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn  157 (202)
T 2w58_A          113 IKKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSN  157 (202)
T ss_dssp             HHHSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEES
T ss_pred             hcCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcC
Confidence            34678999999933 34444455344 455443345667777775

>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*

Probab=91.65  E-value=0.77  Score=25.16  Aligned_cols=41  Identities=22%  Similarity=0.464  Sum_probs=36.1

Q ss_pred             cCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858           30 GDPPLVFLD-EPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS   70 (72)
Q Consensus        30 ~~p~~lllD-EP~~gld~~~~~~i~~~l~~~~~~g~til~~~   70 (72)
                      .+++.+++| .....+|..+...+.++.+++.+.|..+.++.
T Consensus        50 ~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~   91 (135)
T 4dgf_A           50 ETPKVFILRMRRVPVIDATGMHALWEFQESCEKRGTILLLSG   91 (135)
T ss_dssp             SCCSEEEEECTTCSCBCHHHHHHHHHHHHHHHHHTCEEEEES
T ss_pred             CCCcEEEEEcCCCCccCHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence            678899999 78899999999999999999887788888764

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=91.53  E-value=0.15  Score=35.00  Aligned_cols=60  Identities=12%  Similarity=0.092  Sum_probs=45.0

Q ss_pred             CCCCChHH-HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEec
Q psy858           11 SGRYSGGN-KRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSH   71 (72)
Q Consensus        11 ~~~lS~G~-~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h   71 (72)
                      ...++.+. ++...+.+.++.++..++++.++.++|.... ....+++.+... +.||+++|+
T Consensus       162 t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~-~~l~la~~v~~~g~rtI~VlTK  223 (608)
T 3szr_A          162 VGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATT-EALSMAQEVDPEGDRTIGILTK  223 (608)
T ss_dssp             -CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTC-HHHHHHHHHCSSCCSEEEEEEC
T ss_pred             cCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccH-HHHHHHHHHhhcCCceEEEecc
Confidence            55665554 5778899999999999999999999998743 466677776544 588888886

>3oiz_A Antisigma-factor antagonist, STAS; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, STAS domain; 1.65A {Rhodobacter sphaeroides} PDB: 3lkl_A

Probab=91.30  E-value=0.41  Score=25.07  Aligned_cols=42  Identities=14%  Similarity=0.093  Sum_probs=36.6

Q ss_pred             hcCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858           29 IGDPPLVFLD-EPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS   70 (72)
Q Consensus        29 ~~~p~~lllD-EP~~gld~~~~~~i~~~l~~~~~~g~til~~~   70 (72)
                      ..+|+.+++| .....+|..+...+.++.+++.+.|..+.++.
T Consensus        41 ~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~   83 (99)
T 3oiz_A           41 REALDRVVIDVSRAHIWDISSVQALDMAVLKFRREGAEVRIVG   83 (99)
T ss_dssp             TSCCSEEEEEEEEEEECSHHHHHHHHHHHHHHHHTTCEEEEES
T ss_pred             cCCCCEEEEECCCCCccCHHHHHHHHHHHHHHHhCCCEEEEEc
Confidence            3578889998 78899999999999999999988898888763

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=90.86  E-value=0.0016  Score=42.82  Aligned_cols=39  Identities=15%  Similarity=0.145  Sum_probs=31.9

Q ss_pred             CC--CEEEEeCCCCCCCHHHHHHHHHHHHHH-HhCCceEEEEec
Q psy858           31 DP--PLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSH   71 (72)
Q Consensus        31 ~p--~~lllDEP~~gld~~~~~~i~~~l~~~-~~~g~til~~~h   71 (72)
                      +|  ++.++|||+.++|+...+..++.+... .+.|.|++  +|
T Consensus       139 dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh  180 (392)
T 1ni3_A          139 DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MK  180 (392)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HH
T ss_pred             CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cc
Confidence            77  888999999999999999999998887 55566653  55

>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}

Probab=90.77  E-value=1.2  Score=24.44  Aligned_cols=40  Identities=18%  Similarity=0.256  Sum_probs=35.5

Q ss_pred             CCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858           31 DPPLVFLD-EPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS   70 (72)
Q Consensus        31 ~p~~lllD-EP~~gld~~~~~~i~~~l~~~~~~g~til~~~   70 (72)
                      +++.+++| .....+|......+.++.+++.+.|..+.++.
T Consensus        63 ~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~  103 (143)
T 3llo_A           63 NIHTVILDFTQVNFMDSVGVKTLAGIVKEYGDVGIYVYLAG  103 (143)
T ss_dssp             CCSEEEEECTTCCCCCHHHHHHHHHHHHHHHTTTCEEEEES
T ss_pred             CceEEEEECCCCccccHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence            67899999 78999999999999999999888888888764

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=90.77  E-value=0.12  Score=32.49  Aligned_cols=43  Identities=16%  Similarity=0.242  Sum_probs=24.0

Q ss_pred             hcCCCEEEEeCCC-CCCCHHHHHHHHH-HHHHHHhCCceEEEEec
Q psy858           29 IGDPPLVFLDEPT-SGVDPISRHRLWA-VLSQIQKTGQSIVLTSH   71 (72)
Q Consensus        29 ~~~p~~lllDEP~-~gld~~~~~~i~~-~l~~~~~~g~til~~~h   71 (72)
                      +.+++++++||.- ..++.+.+..++. ++.....++..+|++|+
T Consensus       212 ~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN  256 (308)
T 2qgz_A          212 VKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSN  256 (308)
T ss_dssp             HHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEES
T ss_pred             hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECC
Confidence            4578899999983 3455555554444 55543234667777775

>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB), bicarbonate transport, anion T membrane protein, STAS domain, SLC26; HET: SXM; 1.92A {Escherichia coli}

Probab=90.01  E-value=0.63  Score=25.05  Aligned_cols=40  Identities=10%  Similarity=0.196  Sum_probs=35.7

Q ss_pred             cCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858           30 GDPPLVFLD-EPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS   70 (72)
Q Consensus        30 ~~p~~lllD-EP~~gld~~~~~~i~~~l~~~~~~g~til~~~   70 (72)
                      .+++.+++| .....+|..+...+.++.+++.+ |..+.++.
T Consensus        44 ~~~~~vilDl~~v~~iDssgl~~L~~~~~~~~~-g~~l~l~~   84 (118)
T 3ny7_A           44 EGKRIVILKWDAVPVLDAGGLDAFQRFVKRLPE-GCELRVCN   84 (118)
T ss_dssp             TTCSEEEEEEEECCCBCHHHHHHHHHHHHHCCT-TCEEEEEC
T ss_pred             CCCcEEEEEcCCCCeecHHHHHHHHHHHHHHHC-CCEEEEec
Confidence            678999999 78899999999999999999888 98888874

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=90.00  E-value=0.37  Score=27.65  Aligned_cols=39  Identities=15%  Similarity=0.136  Sum_probs=26.2

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858           31 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH   71 (72)
Q Consensus        31 ~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h   71 (72)
                      ++.++++||.-. +++.....+...+.+. ..+..+|++++
T Consensus       126 ~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~  164 (250)
T 1njg_A          126 RFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATT  164 (250)
T ss_dssp             SSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEES
T ss_pred             CceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeC
Confidence            467999999755 7777777776666432 23556676664

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=89.98  E-value=0.012  Score=37.28  Aligned_cols=39  Identities=13%  Similarity=0.146  Sum_probs=28.2

Q ss_pred             hcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy858            7 RHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK   61 (72)
Q Consensus         7 ~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~   61 (72)
                      +..++..||+|+++|+.++                .+||+...+.+.+++++..+
T Consensus       156 at~~~~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~  194 (334)
T 1in4_A          156 ATTRSGLLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAAS  194 (334)
T ss_dssp             EESCGGGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHH
T ss_pred             ecCCcccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHH
Confidence            3456678999999998543                56777777777777776543

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=89.01  E-value=0.11  Score=32.45  Aligned_cols=42  Identities=19%  Similarity=0.147  Sum_probs=22.5

Q ss_pred             CCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           31 DPPLVFLDEPTSGVD---PISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        31 ~p~~lllDEP~~gld---~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      .|.++++||+....+   ......+.+.+..+...+.++|+++|+
T Consensus       128 ~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~  172 (386)
T 2qby_A          128 SQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITND  172 (386)
T ss_dssp             SCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESC
T ss_pred             CeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECC
Confidence            378999999876542   222222333222112236788888874

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=88.66  E-value=0.0048  Score=36.37  Aligned_cols=34  Identities=15%  Similarity=0.166  Sum_probs=24.0

Q ss_pred             HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy858           27 ALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ   60 (72)
Q Consensus        27 ~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~   60 (72)
                      +++.+|.+.+|||+++++|..+.+.+.+.+....
T Consensus       120 ~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~  153 (198)
T 1lvg_A          120 IFVQPPSLDVLEQRLRLRNTETEESLAKRLAAAR  153 (198)
T ss_dssp             EEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred             EEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            4556666666777788888877777777776543

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=88.43  E-value=1.9  Score=28.29  Aligned_cols=42  Identities=17%  Similarity=0.176  Sum_probs=26.6

Q ss_pred             cCCCEEEEeCCCCCCCH----------HHHHHHHHHHHHHHhC-CceEEEEec
Q psy858           30 GDPPLVFLDEPTSGVDP----------ISRHRLWAVLSQIQKT-GQSIVLTSH   71 (72)
Q Consensus        30 ~~p~~lllDEP~~gld~----------~~~~~i~~~l~~~~~~-g~til~~~h   71 (72)
                      .+++++++|..+.-...          .....+...|+.++++ +++|++++|
T Consensus       309 ~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsq  361 (444)
T 2q6t_A          309 NQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQ  361 (444)
T ss_dssp             SCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEE
T ss_pred             cCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence            47889999986542221          1223455556666554 899999887

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=88.24  E-value=0.0012  Score=43.63  Aligned_cols=25  Identities=16%  Similarity=0.032  Sum_probs=22.2

Q ss_pred             cCCCCChHHHHHHHHHHHHhcCCCEEE
Q psy858           10 ESGRYSGGNKRKLSTAMALIGDPPLVF   36 (72)
Q Consensus        10 ~~~~lS~G~~qr~~ia~~l~~~p~~ll   36 (72)
                      .+.+||||++||  ++++++.+|++..
T Consensus       290 ~~~~LSgg~~QR--LaraL~~~p~~~~  314 (418)
T 1p9r_A          290 ISSSLLGVLAQR--LVRTLCPDCKEPY  314 (418)
T ss_dssp             HHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred             HHHHHHHHHHHH--hhhhhcCCCCccC
Confidence            566799999999  9999999999865

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=88.11  E-value=0.88  Score=27.52  Aligned_cols=37  Identities=14%  Similarity=0.264  Sum_probs=26.1

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           31 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        31 ~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +++++++||-.. ++..    +.+.+..+.+.|..|+++.|+
T Consensus        89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~~gi~Vil~Gl~  125 (223)
T 2b8t_A           89 ETKVIGIDEVQF-FDDR----ICEVANILAENGFVVIISGLD  125 (223)
T ss_dssp             TCCEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEECCS
T ss_pred             CCCEEEEecCcc-CcHH----HHHHHHHHHhCCCeEEEEecc
Confidence            489999999864 5543    444455555568999999873

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=87.92  E-value=3.9  Score=26.41  Aligned_cols=52  Identities=15%  Similarity=0.251  Sum_probs=32.1

Q ss_pred             HHHHHHHHHh--cCCCEEEEeCCCCCCC-----H--------HHHHHHHHHHHHH---Hh-CCceEEEEec
Q psy858           20 RKLSTAMALI--GDPPLVFLDEPTSGVD-----P--------ISRHRLWAVLSQI---QK-TGQSIVLTSH   71 (72)
Q Consensus        20 qr~~ia~~l~--~~p~~lllDEP~~gld-----~--------~~~~~i~~~l~~~---~~-~g~til~~~h   71 (72)
                      +.+.++..++  .+++++++|..+.-..     -        ...+.+.+.++.+   .+ .+++||++.|
T Consensus       139 ~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq  209 (366)
T 1xp8_A          139 QALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQ  209 (366)
T ss_dssp             HHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred             HHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence            3455566665  4689999999876441     0        1113355555555   33 4899999877

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=87.46  E-value=0.59  Score=28.97  Aligned_cols=39  Identities=13%  Similarity=0.187  Sum_probs=28.0

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858           31 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH   71 (72)
Q Consensus        31 ~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h   71 (72)
                      +++++++|| ...+++.....+.+.+.+... ...++++++
T Consensus       133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~  171 (353)
T 1sxj_D          133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICN  171 (353)
T ss_dssp             SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEES
T ss_pred             CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeC
Confidence            456999999 778899888888888776432 344555553

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=86.39  E-value=1.5  Score=29.19  Aligned_cols=38  Identities=5%  Similarity=0.113  Sum_probs=28.1

Q ss_pred             HHHHHHHhcCCCEEEEeCCC-CC--CCHHHHHHHHHHHHHH
Q psy858           22 LSTAMALIGDPPLVFLDEPT-SG--VDPISRHRLWAVLSQI   59 (72)
Q Consensus        22 ~~ia~~l~~~p~~lllDEP~-~g--ld~~~~~~i~~~l~~~   59 (72)
                      -++..+...+++++|+|+|. .+  .|+....++..+....
T Consensus       170 ~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~  210 (433)
T 3kl4_A          170 KGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVL  210 (433)
T ss_dssp             HHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhh
Confidence            34555556789999999997 35  7888888888766554

>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*

Probab=86.18  E-value=2.6  Score=22.65  Aligned_cols=43  Identities=23%  Similarity=0.268  Sum_probs=36.0

Q ss_pred             HhcCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858           28 LIGDPPLVFLD-EPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS   70 (72)
Q Consensus        28 l~~~p~~lllD-EP~~gld~~~~~~i~~~l~~~~~~g~til~~~   70 (72)
                      +..+++.+++| +-...+|......+..+.+.+.+.|..+.++.
T Consensus        48 ~~~~~~~vvlDls~V~~iDSsGl~~L~~~~~~~~~~g~~l~l~~   91 (125)
T 2ka5_A           48 LNKGYNKIFLVLSDVESIDSFSLGVIVNILKSISSSGGFFALVS   91 (125)
T ss_dssp             TTTTCCEEEEECTTCSCCCHHHHHHHHHHHHHHHHHTCEEEEEC
T ss_pred             hhCCCCEEEEECCCCCEEcHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence            44567889999 78999999999999999998877788887764

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=85.09  E-value=2.2  Score=26.28  Aligned_cols=37  Identities=11%  Similarity=0.163  Sum_probs=26.9

Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           30 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        30 ~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      .+.+++++||-.-..+      +.++++.+.+.|..|++..++
T Consensus        89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~  125 (234)
T 2orv_A           89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALD  125 (234)
T ss_dssp             TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCS
T ss_pred             ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecc
Confidence            6789999999876644      555555555578999987654

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=85.06  E-value=4.5e-05  Score=51.54  Aligned_cols=49  Identities=12%  Similarity=0.213  Sum_probs=34.4

Q ss_pred             CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEE--EecC
Q psy858           12 GRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVL--TSHR   72 (72)
Q Consensus        12 ~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~--~~h~   72 (72)
                      ..+|+|++||.+++          ++ | ++|+|+...+.+++.+.++...+.|+++  +||+
T Consensus       399 ~~~s~G~~~R~~~a----------i~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~  449 (511)
T 2oap_1          399 MWVRGNTRLRRTKE----------VN-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKK  449 (511)
T ss_dssp             EEESSSCEEEEEEE----------EE-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTH
T ss_pred             EEEeCCCceEEEEE----------EE-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHH
Confidence            34688887776543          12 7 9999998877777777666556888875  7873

>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}

Probab=84.75  E-value=2.4  Score=22.89  Aligned_cols=40  Identities=15%  Similarity=0.202  Sum_probs=34.6

Q ss_pred             CCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858           31 DPPLVFLD-EPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS   70 (72)
Q Consensus        31 ~p~~lllD-EP~~gld~~~~~~i~~~l~~~~~~g~til~~~   70 (72)
                      +++.+++| +-...+|..+...+.++.+++.+.|..++++.
T Consensus        47 ~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~   87 (130)
T 2kln_A           47 QVEWFVLNAESNVEVDLTALDALDQLRTELLRRGIVFAMAR   87 (130)
T ss_dssp             CCEEEEEECSCCSSSBCSTTTHHHHHHHHHHTTTEEEEEEC
T ss_pred             CceEEEEECCCCChhhHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence            46789999 77889999999999999999887788888764

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=84.60  E-value=0.68  Score=29.37  Aligned_cols=56  Identities=11%  Similarity=0.124  Sum_probs=36.8

Q ss_pred             CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-ceEEEEe
Q psy858           14 YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTG-QSIVLTS   70 (72)
Q Consensus        14 lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g-~til~~~   70 (72)
                      .+..++++..+++..+.+|+++|+.-..+..|... .....+++.+...| .++++++
T Consensus       155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~n  211 (360)
T 3t34_A          155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLT  211 (360)
T ss_dssp             CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEE
T ss_pred             chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEe
Confidence            56678899999999999999777764333344332 34455666654444 5666665

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=83.74  E-value=2.2  Score=24.08  Aligned_cols=40  Identities=15%  Similarity=0.280  Sum_probs=26.1

Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858           30 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH   71 (72)
Q Consensus        30 ~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h   71 (72)
                      .++.++++||. ..+++.....+...+... ..+..+|+++.
T Consensus       101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~-~~~~~~i~~~~  140 (226)
T 2chg_A          101 APFKIIFLDEA-DALTADAQAALRRTMEMY-SKSCRFILSCN  140 (226)
T ss_dssp             CSCEEEEEETG-GGSCHHHHHHHHHHHHHT-TTTEEEEEEES
T ss_pred             cCceEEEEeCh-hhcCHHHHHHHHHHHHhc-CCCCeEEEEeC
Confidence            46789999995 456777777777776553 23455555553

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=83.72  E-value=3.2  Score=24.49  Aligned_cols=53  Identities=13%  Similarity=0.008  Sum_probs=30.8

Q ss_pred             ChHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCceEEEE
Q psy858           15 SGGNKRKLSTAMALIGDPPLVFLDEPTS-GVDPISRHRLWAVLSQIQKTGQSIVLT   69 (72)
Q Consensus        15 S~G~~qr~~ia~~l~~~p~~lllDEP~~-gld~~~~~~i~~~l~~~~~~g~til~~   69 (72)
                      +.|.-.+.  ....+.+.+++++||.-. ++|........+.+.....+-.+++++
T Consensus       162 Tpg~l~~~--l~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~S  215 (235)
T 3llm_A          162 TVGVLLRK--LEAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMS  215 (235)
T ss_dssp             EHHHHHHH--HHHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred             CHHHHHHH--HHhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEe
Confidence            44554443  234578899999999965 677776644443333332222345544

>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A

Probab=82.84  E-value=3.5  Score=21.34  Aligned_cols=47  Identities=15%  Similarity=0.148  Sum_probs=36.9

Q ss_pred             HHHHHhcC-CCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858           24 TAMALIGD-PPLVFLD-EPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS   70 (72)
Q Consensus        24 ia~~l~~~-p~~lllD-EP~~gld~~~~~~i~~~l~~~~~~g~til~~~   70 (72)
                      +...+..+ ++.+++| .....+|......+..+.+.+.+.|..+.++.
T Consensus        34 l~~~~~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~   82 (116)
T 1th8_B           34 VTDVLENRAIRHIVLNLGQLTFMDSSGLGVILGRYKQIKNVGGQMVVCA   82 (116)
T ss_dssp             HHHHHHSSCCCEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCCEEEES
T ss_pred             HHHHHhcCCCcEEEEECCCCcEEccHHHHHHHHHHHHHHHhCCeEEEEe
Confidence            33444444 7888999 67889999999999999999887788877764

>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2

Probab=82.54  E-value=2.1  Score=23.65  Aligned_cols=46  Identities=17%  Similarity=0.172  Sum_probs=30.3

Q ss_pred             HHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858           26 MALIGDP--PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH   71 (72)
Q Consensus        26 ~~l~~~p--~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h   71 (72)
                      .|+-.+.  .+++.|+-+..-|+..+..+.+++....+.|..|.+++.
T Consensus        48 ~Ale~GAVetLLI~d~l~r~~d~~~~~~~~el~e~~~~~G~~V~ivs~   95 (124)
T 1x52_A           48 KANEAMAIDTLLISDELFRHQDVATRSRYVRLVDSVKENAGTVRIFSS   95 (124)
T ss_dssp             HHHHTTCEEEEEEEHHHHTCSSHHHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred             HHHHcCCccEEEechhhhcCCChHHHHHHHHHHHHHHHcCCEEEEECC
Confidence            3444443  356666665555788888888866555566888888764

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=82.47  E-value=7.2  Score=25.49  Aligned_cols=55  Identities=11%  Similarity=0.224  Sum_probs=37.8

Q ss_pred             CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEec
Q psy858           12 GRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSH   71 (72)
Q Consensus        12 ~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h   71 (72)
                      ..|+..+.+++.-+...+...++++.|+|...  .   ..+...++++.+ .+..+|++.+
T Consensus       263 g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s--~---~~l~~~~~~l~~~~~~~lIvID~  318 (444)
T 2q6t_A          263 GQLTDRDFSRLVDVASRLSEAPIYIDDTPDLT--L---MEVRARARRLVSQNQVGLIIIDY  318 (444)
T ss_dssp             GGCCHHHHHHHHHHHHHHHTSCEEEECCTTCB--H---HHHHHHHHHHHHHSCCCEEEEEC
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCEEEECCCCCC--H---HHHHHHHHHHHHHcCCCEEEEcC
Confidence            35888898998888877778889998877443  3   234445555543 4778887743

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=82.17  E-value=6.9  Score=25.90  Aligned_cols=42  Identities=21%  Similarity=0.245  Sum_probs=26.8

Q ss_pred             cCCCEEEEeCCCC---C---CCH-HHHHHHHHHHHHHHhC-CceEEEEec
Q psy858           30 GDPPLVFLDEPTS---G---VDP-ISRHRLWAVLSQIQKT-GQSIVLTSH   71 (72)
Q Consensus        30 ~~p~~lllDEP~~---g---ld~-~~~~~i~~~l~~~~~~-g~til~~~h   71 (72)
                      .+++++++|--+.   +   -+. .....+...|+.++++ +++|++++|
T Consensus       353 ~~~~lvVID~l~~l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q  402 (503)
T 1q57_A          353 LGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICH  402 (503)
T ss_dssp             TCCSEEEEECTTCCCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred             cCCCEEEEccchhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEc
Confidence            4699999995432   1   111 2233455566666554 999999988

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=81.70  E-value=4.7  Score=21.98  Aligned_cols=40  Identities=0%  Similarity=0.131  Sum_probs=28.5

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858           31 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH   71 (72)
Q Consensus        31 ~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h   71 (72)
                      +..++++||.- .+++..+..+...+.+....+..+|.+|+
T Consensus        75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn  114 (143)
T 3co5_A           75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCS  114 (143)
T ss_dssp             TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred             CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecC
Confidence            46799999964 67888888888887764333566777664

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=81.30  E-value=1.6  Score=27.20  Aligned_cols=42  Identities=21%  Similarity=0.232  Sum_probs=25.4

Q ss_pred             cCCCEEEEeCCCCCCC--------HHH----HHHHHHHHHHHHh-CCceEEEEec
Q psy858           30 GDPPLVFLDEPTSGVD--------PIS----RHRLWAVLSQIQK-TGQSIVLTSH   71 (72)
Q Consensus        30 ~~p~~lllDEP~~gld--------~~~----~~~i~~~l~~~~~-~g~til~~~h   71 (72)
                      .+++++++|..+.-..        ...    ...+...|..+.+ .+.+||++.|
T Consensus       203 ~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq  257 (322)
T 2i1q_A          203 NNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQ  257 (322)
T ss_dssp             CEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             cCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECc
Confidence            4588999998765321        111    1334444444444 4899999876

>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A

Probab=80.82  E-value=4.1  Score=20.80  Aligned_cols=45  Identities=20%  Similarity=0.262  Sum_probs=36.0

Q ss_pred             HHHhcCC-CEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858           26 MALIGDP-PLVFLD-EPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS   70 (72)
Q Consensus        26 ~~l~~~p-~~lllD-EP~~gld~~~~~~i~~~l~~~~~~g~til~~~   70 (72)
                      ..+...+ +.+++| .-...+|......+..+.+.+.+.|..+.++.
T Consensus        37 ~~~~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~   83 (110)
T 1sbo_A           37 NFISTTSKKKIVLDLSSVSYMDSAGLGTLVVILKDAKINGKEFILSS   83 (110)
T ss_dssp             THHHHCSCSEEEEECTTCCCBCHHHHHHHHHHHHHHHHTTCEEEEES
T ss_pred             HHHhcCCCcEEEEECCCCcEEccHHHHHHHHHHHHHHHcCCEEEEEe
Confidence            3343444 788999 78889999999999999998887788887764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	72
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	4e-19
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	3e-18
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	2e-17
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	3e-16
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	2e-14
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	3e-14
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	8e-14
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	9e-14
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	1e-13
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	2e-13
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	3e-13
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	4e-13
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	1e-12
g1ii8.1	369	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	2e-12
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	3e-12
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	2e-10
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	2e-10
g1f2t.1	292	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	2e-10
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	2e-09
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	4e-07
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	4e-07
d2onka1	240	c.37.1.12 (A:1-240) Molybdate/tungstate import ATP	3e-06
d1w1wa_	427	c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac	7e-06

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score = 74.9 bits (184), Expect = 4e-19
 Identities = 22/70 (31%), Positives = 38/70 (54%)

Query: 2   GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
            L E   +  G  SGG ++ L+   AL+  P L+ +DEP+ G+ PI    ++ V+ +I +
Sbjct: 128 RLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ 187

Query: 62  TGQSIVLTSH 71
            G +I+L   
Sbjct: 188 EGTTILLVEQ 197

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 72.5 bits (178), Expect = 3e-18
 Identities = 18/72 (25%), Positives = 41/72 (56%), Gaps = 1/72 (1%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           + + E  +R   + SGG +++++ A A++ +P ++ +DEP S +D   R  + A + ++Q
Sbjct: 124 LQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQ 183

Query: 61  -KTGQSIVLTSH 71
            K   + +  +H
Sbjct: 184 QKLKVTTIYVTH 195

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 71.2 bits (174), Expect = 2e-17
 Identities = 18/71 (25%), Positives = 39/71 (54%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           + L+    R++G  SGG  + +    AL+ +P ++ +DEP +GV P   H ++  + +++
Sbjct: 138 LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 197

Query: 61  KTGQSIVLTSH 71
             G + ++  H
Sbjct: 198 AKGITFLIIEH 208

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score = 67.7 bits (165), Expect = 3e-16
 Identities = 28/71 (39%), Positives = 40/71 (56%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
            GL E        YS G  RKL  A AL+ +P L  LDEPTSG+D ++   +  +L Q  
Sbjct: 121 AGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS 180

Query: 61  KTGQSIVLTSH 71
           + G +I+++SH
Sbjct: 181 QEGLTILVSSH 191

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 62.5 bits (152), Expect = 2e-14
 Identities = 18/76 (23%), Positives = 43/76 (56%), Gaps = 5/76 (6%)

Query: 1   MGLTEYRHRESGRY----SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVL 56
           + + E   R +       SGG +++++ A AL  +PP++  D+PT  +D  +  ++  +L
Sbjct: 129 LKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLL 188

Query: 57  SQIQK-TGQSIVLTSH 71
            ++ +  G+++V+ +H
Sbjct: 189 KKLNEEDGKTVVVVTH 204

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score = 62.2 bits (151), Expect = 3e-14
 Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           +GL +         SGG K++++ A AL  +P ++  DE TS +DP +   +  +L  I 
Sbjct: 128 VGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDIN 187

Query: 61  K-TGQSIVLTSH 71
           +  G +I+L +H
Sbjct: 188 RRLGLTILLITH 199

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score = 61.1 bits (148), Expect = 8e-14
 Identities = 22/72 (30%), Positives = 42/72 (58%), Gaps = 1/72 (1%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           +GLTE  +R+    SGG +++++   A++  P +  +DEP S +D   R R+ A L ++Q
Sbjct: 127 LGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQ 186

Query: 61  -KTGQSIVLTSH 71
            + G + +  +H
Sbjct: 187 RQLGVTTIYVTH 198

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 60.3 bits (146), Expect = 9e-14
 Identities = 15/71 (21%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           + + + + +  G  S G  R++  A  L+ +  +  LD+P   +D  S+H++   + +I 
Sbjct: 114 VEVLDLKKK-LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEIL 172

Query: 61  KTGQSIVLTSH 71
           K    ++++S 
Sbjct: 173 KEKGIVIISSR 183

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 61.0 bits (148), Expect = 1e-13
 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 2   GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
           GL           SGG +++++ A AL+ D P++ LDE TS +D  S   + A L ++QK
Sbjct: 141 GLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK 200

Query: 62  TGQSIVLTSHR 72
             ++ ++ +HR
Sbjct: 201 -NRTSLVIAHR 210

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score = 60.3 bits (146), Expect = 2e-13
 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 7/79 (8%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALI-------GDPPLVFLDEPTSGVDPISRHRLW 53
           + L +   R + + SGG  +++  A  ++           L+ LDEP + +D   +  L 
Sbjct: 113 LALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALD 172

Query: 54  AVLSQIQKTGQSIVLTSHR 72
            +LS + + G +IV++SH 
Sbjct: 173 KILSALCQQGLAIVMSSHD 191

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score = 59.9 bits (145), Expect = 3e-13
 Identities = 21/72 (29%), Positives = 43/72 (59%), Gaps = 1/72 (1%)

Query: 1   MGLTE-YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI 59
           +G+ E  + +     SGG ++++S A AL  +P ++  DEPTS +DP     +  ++ Q+
Sbjct: 136 VGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQL 195

Query: 60  QKTGQSIVLTSH 71
            + G+++V+ +H
Sbjct: 196 AEEGKTMVVVTH 207

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.5 bits (144), Expect = 4e-13
 Identities = 13/71 (18%), Positives = 27/71 (38%)

Query: 2   GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
                        SGG + ++S A A+  D  L  LD P   +D  +  +++        
Sbjct: 147 QDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLM 206

Query: 62  TGQSIVLTSHR 72
             ++ +L + +
Sbjct: 207 ANKTRILVTSK 217

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score = 58.0 bits (140), Expect = 1e-12
 Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
            G       +    SGG +++++ A AL+ +P ++  DE TS +D  S H +   + +I 
Sbjct: 127 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC 186

Query: 61  KTGQSIVLTSHR 72
           K G+++++ +HR
Sbjct: 187 K-GRTVIIIAHR 197

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score = 56.7 bits (137), Expect = 3e-12
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
            G          + SGG K++LS A   + +PP++ LDE TS +D  S   +   L  + 
Sbjct: 142 QGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS 201

Query: 61  KTGQSIVLTSHR 72
           K  ++ ++ +HR
Sbjct: 202 K-DRTTLIVAHR 212

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score = 51.8 bits (124), Expect = 2e-10
 Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
           SGG +++L+ A A + +P ++ LDE T+ +D  S   +   L  + K G++ ++ +HR
Sbjct: 141 SGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK-GRTTLVIAHR 197

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 51.9 bits (124), Expect = 2e-10
 Identities = 17/72 (23%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           + L     R+    SGG +++++    L+ +P +  LDEP S +D   R ++   +S++ 
Sbjct: 118 LQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH 177

Query: 61  -KTGQSIVLTSH 71
            + G++++  +H
Sbjct: 178 KRLGRTMIYVTH 189

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (118), Expect = 2e-09
 Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 15  SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR 72
           SGG ++ ++ A ALI  P ++ LD+ TS +D  S+ ++  +L +  +   +S++L +  
Sbjct: 153 SGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQH 211

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score = 42.7 bits (100), Expect = 4e-07
 Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           + +     R     SGG +++++ A AL+ +P ++ LDEP S +DP ++     +LS + 
Sbjct: 115 LKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLH 174

Query: 61  -KTGQSIVLTSH 71
            K   +++  +H
Sbjct: 175 KKNKLTVLHITH 186

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 42.8 bits (100), Expect = 4e-07
 Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           + +    +      SG  +++++ A AL+ DP L+ LDEP S +D   R    A++ ++Q
Sbjct: 128 LDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQ 187

Query: 61  -KTGQSIVLTSH 71
            + G ++++ SH
Sbjct: 188 SRLGVTLLVVSH 199

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 40.4 bits (94), Expect = 3e-06
 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 1   MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
           +G+     R+  R SGG +++++ A AL+  P L+ LDEP S VD  ++  L   L  +Q
Sbjct: 114 LGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQ 173

Query: 61  -KTGQSIVLTSH 71
            +    I+  +H
Sbjct: 174 REFDVPILHVTH 185

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.3 bits (90), Expect = 7e-06
 Identities = 10/51 (19%), Positives = 21/51 (41%)

Query: 22  LSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
           L  A+      P   LDE  + +D  +  R+ A + + +      ++ S +
Sbjct: 345 LLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLK 395

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	72
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.97
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.97
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.97
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.97
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.97
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.97
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.96
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.96
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.96
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.96
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.96
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.96
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.95
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.94
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.94
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.94
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.93
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.93
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.91
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.91
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.81
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.67
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	99.43
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.85
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	98.83
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	98.21
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	97.82
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	97.58
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	93.6
d2vgna3	104	Dom34 {Saccharomyces cerevisiae [TaxId: 4932]}	92.46
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	91.69
d1x8ha_	228	Zn metallo-beta-lactamase {Aeromonas hydrophila, C	85.99
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	85.34
d1x52a1	111	Cell division protein pelota {Human (Homo sapiens)	84.67
d1jcea1	137	Prokaryotic actin homolog MreB {Thermotoga maritim	80.95
d1th8b_	115	Anti-sigma factor antagonist SpoIIaa {Bacillus ste	80.88
d1g5ta_	157	ATP:corrinoid adenosyltransferase CobA {Salmonella	80.82
d1mqoa_	221	Zn metallo-beta-lactamase {Bacillus cereus [TaxId:	80.61
d1znba_	230	Zn metallo-beta-lactamase {Bacteroides fragilis [T	80.53

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.97  E-value=3.3e-31  Score=163.45  Aligned_cols=72  Identities=31%  Similarity=0.595  Sum_probs=68.8

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +++.+..++++.+||||||||++|||||+.+|+++|+||||+|||+..+..+++.++++.++ |.|||++|||
T Consensus       127 ~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd  199 (240)
T d1g2912         127 LGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHD  199 (240)
T ss_dssp             HTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESC
T ss_pred             cCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCC
Confidence            36788999999999999999999999999999999999999999999999999999999766 9999999997

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.97  E-value=3.3e-31  Score=163.37  Aligned_cols=72  Identities=24%  Similarity=0.486  Sum_probs=69.2

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|++++.++++.+||||||||++|||||+.+|+++||||||+|||+..+..++++++++.++ |.|||++|||
T Consensus       124 ~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd  196 (239)
T d1v43a3         124 LQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHD  196 (239)
T ss_dssp             TTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESC
T ss_pred             cCChhhhcCChhhCCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence            57889999999999999999999999999999999999999999999999999999999765 9999999997

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.97  E-value=8.9e-31  Score=160.70  Aligned_cols=72  Identities=25%  Similarity=0.626  Sum_probs=66.8

Q ss_pred             CCCcc-hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTE-YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~-~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +++.+ ..+++|.+||||||||++|||||+.+|+++|+||||++||+.+++.++++++++.++ |.|||++|||
T Consensus       132 ~~L~~~~~~~~p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd  205 (230)
T d1l2ta_         132 AELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD  205 (230)
T ss_dssp             TTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             hchhhhhhcCChhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCC
Confidence            35643 578999999999999999999999999999999999999999999999999999765 9999999997

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=5e-31  Score=162.61  Aligned_cols=72  Identities=31%  Similarity=0.580  Sum_probs=69.1

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+.+..++++.+||||||||++|||||+.+|+++|+||||+|||+..+..+++.++++.++ |.|||++|||
T Consensus       128 vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd  200 (240)
T d3dhwc1         128 VGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHE  200 (240)
T ss_dssp             HSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSC
T ss_pred             cCCchhhhCChhhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCC
Confidence            47888999999999999999999999999999999999999999999999999999999776 9999999997

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.97  E-value=8.3e-31  Score=160.74  Aligned_cols=72  Identities=26%  Similarity=0.506  Sum_probs=68.7

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~   72 (72)
                      +++.+..++++.+||||||||++||||++.+|+++||||||+|||+.++..++++++++.+ .|.|||++|||
T Consensus       115 ~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd  187 (229)
T d3d31a2         115 LKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHD  187 (229)
T ss_dssp             TTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             hcchhhHhCChhhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCC
Confidence            4788899999999999999999999999999999999999999999999999999999865 49999999997

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.97  E-value=6.8e-31  Score=162.15  Aligned_cols=72  Identities=28%  Similarity=0.496  Sum_probs=69.1

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+++..++++.+||||||||++|||||+.+|+++|+||||+|||+..+..+++.++++.++ |.|+|++|||
T Consensus       128 ~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd  200 (242)
T d1oxxk2         128 LDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHD  200 (242)
T ss_dssp             TTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESC
T ss_pred             cChHhhhhCChhhCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECC
Confidence            57889999999999999999999999999999999999999999999999999999999665 9999999997

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=6.2e-31  Score=161.55  Aligned_cols=72  Identities=25%  Similarity=0.552  Sum_probs=48.5

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~   72 (72)
                      +++.+..++++.+||||||||++|||||+.+|+++||||||+|||+.++..+++.++++.+ .|.|||++|||
T Consensus       118 ~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd  190 (232)
T d2awna2         118 LQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD  190 (232)
T ss_dssp             C---------------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESC
T ss_pred             CCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            4778899999999999999999999999999999999999999999999999999999865 59999999997

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.96  E-value=2.4e-30  Score=159.43  Aligned_cols=71  Identities=31%  Similarity=0.593  Sum_probs=67.6

Q ss_pred             CCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         2 ~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ++.+..++++.+||||||||++||||++.+|+++||||||+|||+.+++.+++++++++++|.||+++|||
T Consensus       128 ~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~  198 (240)
T d1ji0a_         128 RLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQN  198 (240)
T ss_dssp             HHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             ChHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            35678899999999999999999999999999999999999999999999999999998889999999997

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.96  E-value=1.8e-30  Score=160.07  Aligned_cols=72  Identities=32%  Similarity=0.535  Sum_probs=69.1

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      +|+.+..++++.+||||||||++||||++.+|++++|||||+|||+..+..+++.++++.++ |.|||++|||
T Consensus       114 ~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd  186 (240)
T d2onka1         114 LGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHD  186 (240)
T ss_dssp             TTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESC
T ss_pred             cCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence            57889999999999999999999999999999999999999999999999999999999765 9999999997

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.96  E-value=8.5e-30  Score=157.96  Aligned_cols=72  Identities=26%  Similarity=0.581  Sum_probs=68.6

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +++.+..++++.+||||||||++|||||+.+|+++||||||+|||+.+++.+++++++++++|.||+++|||
T Consensus       138 ~~l~~~~~~~~~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHd  209 (254)
T d1g6ha_         138 LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHR  209 (254)
T ss_dssp             TTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             cCcchhccCchhhCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCc
Confidence            366778899999999999999999999999999999999999999999999999999998889999999997

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.96  E-value=9.8e-30  Score=156.58  Aligned_cols=71  Identities=39%  Similarity=0.584  Sum_probs=68.5

Q ss_pred             CCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         2 ~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ++.+..++++.+||||||||++||+|++++|+++||||||+|||+.+++.+++++++++++|.|||++||+
T Consensus       122 ~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~  192 (238)
T d1vpla_         122 GLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHN  192 (238)
T ss_dssp             CCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            67788999999999999999999999999999999999999999999999999999998889999999997

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.96  E-value=1.6e-29  Score=157.18  Aligned_cols=72  Identities=29%  Similarity=0.561  Sum_probs=67.0

Q ss_pred             CCCcc-hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTE-YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~-~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +++.+ ..++++.+|||||+||++|||||+.+|+++|+||||+|||+.++..+++++++++++|.|||++|||
T Consensus       136 ~~l~~~~~~~~p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHd  208 (258)
T d1b0ua_         136 VGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE  208 (258)
T ss_dssp             TTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSC
T ss_pred             cCCchhhhccCcccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCC
Confidence            35654 4578899999999999999999999999999999999999999999999999998889999999997

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=1.9e-28  Score=150.07  Aligned_cols=72  Identities=28%  Similarity=0.471  Sum_probs=68.0

Q ss_pred             CCCcchhcCcCCCCChHHHHHHHHHHHHhc-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            1 MGLTEYRHRESGRYSGGNKRKLSTAMALIG-------DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~-------~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      +++++..++++.+||||||||+++|+++++       +|+++||||||+|||+.++..+++++++++++|.|||++|||
T Consensus       113 ~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHd  191 (231)
T d1l7vc_         113 LALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHD  191 (231)
T ss_dssp             TTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCC
T ss_pred             cCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            467788999999999999999999999997       679999999999999999999999999998889999999997

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.94  E-value=1.9e-27  Score=147.32  Aligned_cols=69  Identities=32%  Similarity=0.519  Sum_probs=63.2

Q ss_pred             CcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         3 l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ++....+.+.+||||||||++||||++++|+++||||||++||+.++..+++.|+++.+ ++|+|+|||+
T Consensus       142 l~t~~~~~~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~  210 (253)
T d3b60a1         142 LDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHR  210 (253)
T ss_dssp             GGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSC
T ss_pred             chhhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhcc-CCEEEEEECC
Confidence            44455667889999999999999999999999999999999999999999999999864 8999999996

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.3e-27  Score=148.00  Aligned_cols=70  Identities=24%  Similarity=0.388  Sum_probs=63.6

Q ss_pred             CcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858            3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus         3 l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~   72 (72)
                      ++...++.+.+||||||||++||||++++|+++||||||++||+.+...+++.+.++.++ |+|+|++||+
T Consensus       141 ~~~~i~~~~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~  211 (251)
T d1jj7a_         141 YDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQH  211 (251)
T ss_dssp             GGCBCCSSCSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSC
T ss_pred             chhhHhccCccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCC
Confidence            344556678899999999999999999999999999999999999999999999988654 8999999997

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=8.2e-27  Score=143.67  Aligned_cols=66  Identities=27%  Similarity=0.543  Sum_probs=61.2

Q ss_pred             hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      .....+.+||||||||++||||++++|+++||||||++||+.+.+.+++.++++. +++|+|+|||+
T Consensus       132 ~i~~~g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~  197 (241)
T d2pmka1         132 IVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHR  197 (241)
T ss_dssp             BCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSS
T ss_pred             hcCCCCCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHh-CCCEEEEEECC
Confidence            4456678999999999999999999999999999999999999999999999975 48999999996

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.93  E-value=2.9e-27  Score=145.76  Aligned_cols=64  Identities=27%  Similarity=0.516  Sum_probs=59.5

Q ss_pred             cCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            8 HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         8 ~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      .+.+.+||||||||++||||++++|+++||||||++||+.+++.+++.++++. +|+|+|++||+
T Consensus       134 ~~~g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~  197 (242)
T d1mv5a_         134 GERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHR  197 (242)
T ss_dssp             STTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCS
T ss_pred             cCCCCCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHc-CCCEEEEEECC
Confidence            34566899999999999999999999999999999999999999999999986 58999999996

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.93  E-value=3.8e-26  Score=141.62  Aligned_cols=66  Identities=30%  Similarity=0.502  Sum_probs=60.2

Q ss_pred             hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      .....+.+||||||||++||||++++|+++||||||++||+.+...+.+.+.++.+ ++|+|++||+
T Consensus       147 ~i~~~g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~-~~TvI~itH~  212 (255)
T d2hyda1         147 EVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHR  212 (255)
T ss_dssp             BCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSS
T ss_pred             hhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhc-CCEEEEEeCC
Confidence            34445678999999999999999999999999999999999999999999988764 8899999996

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=2.2e-25  Score=139.61  Aligned_cols=66  Identities=20%  Similarity=0.290  Sum_probs=57.4

Q ss_pred             hcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            7 RHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         7 ~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ..+.+.+||||||||+++||||+++|+++||||||++||+.+.+.+++.+......++|+|++||+
T Consensus       152 ~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~  217 (281)
T d1r0wa_         152 LGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSK  217 (281)
T ss_dssp             ECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSC
T ss_pred             hhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEech
Confidence            344567899999999999999999999999999999999999999987644434458999999996

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.91  E-value=8.2e-25  Score=131.43  Aligned_cols=65  Identities=25%  Similarity=0.432  Sum_probs=57.1

Q ss_pred             hcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEec
Q psy858            7 RHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSH   71 (72)
Q Consensus         7 ~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h   71 (72)
                      .++++.+||||||||+++|++++.+|+++||||||+|||+.++..+++.+.++.++ +.+|+.++|
T Consensus       119 ~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~  184 (200)
T d1sgwa_         119 LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE  184 (200)
T ss_dssp             TTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS
T ss_pred             cccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEec
Confidence            34678899999999999999999999999999999999999999999999998765 555555555

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.43  E-value=3.1e-13  Score=85.18  Aligned_cols=64  Identities=20%  Similarity=0.332  Sum_probs=52.9

Q ss_pred             CcCCCCChHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858            9 RESGRYSGGNKRKLSTAMAL----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus         9 ~~~~~lS~G~~qr~~ia~~l----~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      .....+||||+.++++|..+    ..++++++||||+++||+..+..+.++|.++...+.-+|++||+
T Consensus       328 ~~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~  395 (427)
T d1w1wa_         328 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLK  395 (427)
T ss_dssp             CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSC
T ss_pred             hhhhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence            34567899999987776532    56677999999999999999999999998875446679999996

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.85  E-value=2.2e-09  Score=60.77  Aligned_cols=59  Identities=12%  Similarity=-0.017  Sum_probs=45.5

Q ss_pred             CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858           12 GRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR   72 (72)
Q Consensus        12 ~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~   72 (72)
                      .++++|++++.++++++..+|+++++|||....  .....+.+.+.++.+ .+.++++++|+
T Consensus        80 ~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~--~~~~~~~~~l~~~l~~~~~~il~~~h~  139 (178)
T d1ye8a1          80 FEELAIPILERAYREAKKDRRKVIIIDEIGKME--LFSKKFRDLVRQIMHDPNVNVVATIPI  139 (178)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTG--GGCHHHHHHHHHHHTCTTSEEEEECCS
T ss_pred             hhhhhhhhHHHHHHHHHhcCCCceeecCCCccc--hhhHHHHHHHHHHhccCCCEEEEEEcc
Confidence            346899999999999999999999999985433  333455555655544 48999999985

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.83  E-value=1.4e-08  Score=61.70  Aligned_cols=62  Identities=26%  Similarity=0.362  Sum_probs=52.1

Q ss_pred             cCCCCChHHHHHHHHHHH----HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           10 ESGRYSGGNKRKLSTAMA----LIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        10 ~~~~lS~G~~qr~~ia~~----l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      ....+|+|+++...++..    ....+.++++|||-++|+|...+.+.+.+++..+ +.-||++||+
T Consensus       216 ~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHs  281 (308)
T d1e69a_         216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHN  281 (308)
T ss_dssp             BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCC
T ss_pred             hhhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc-CCEEEEEECC
Confidence            456799999998776654    3455689999999999999999999999988754 6789999995

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.82  E-value=6.9e-05  Score=44.41  Aligned_cols=55  Identities=13%  Similarity=0.254  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHhCCceEEEEecC
Q psy858           18 NKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLS-QIQKTGQSIVLTSHR   72 (72)
Q Consensus        18 ~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~-~~~~~g~til~~~h~   72 (72)
                      +-+++.-..--+.+..++|+||+..|-++.....+...+. .+.+.+..++++||.
T Consensus       101 el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~  156 (224)
T d1ewqa2         101 EMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHY  156 (224)
T ss_dssp             HHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred             hHHHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeec
Confidence            3455555555667778999999999999998887555444 455568889999994

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.58  E-value=0.00017  Score=42.86  Aligned_cols=56  Identities=13%  Similarity=0.124  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhC-CceEEEEecC
Q psy858           17 GNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWA-VLSQIQKT-GQSIVLTSHR   72 (72)
Q Consensus        17 G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~-~l~~~~~~-g~til~~~h~   72 (72)
                      .+-++++-+.--+.+..++|+||+..|-++.....+.. ++..+... +..++++||.
T Consensus       106 ~E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~  163 (234)
T d1wb9a2         106 VEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHY  163 (234)
T ss_dssp             HHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             HHHHHHHHHHHhcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecch
Confidence            34455555444566677999999999999999988754 45556544 5678888884

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=93.60  E-value=0.17  Score=29.11  Aligned_cols=46  Identities=20%  Similarity=0.162  Sum_probs=32.8

Q ss_pred             HHHhcCCCEEEEeCCCC-----CCCHHHHHHHHHHHHHHHhC-CceEEEEec
Q psy858           26 MALIGDPPLVFLDEPTS-----GVDPISRHRLWAVLSQIQKT-GQSIVLTSH   71 (72)
Q Consensus        26 ~~l~~~p~~lllDEP~~-----gld~~~~~~i~~~l~~~~~~-g~til~~~h   71 (72)
                      ..-..+++++++|.-++     --|......+...+..+++. +++++++.|
T Consensus       127 ~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H  178 (274)
T d1nlfa_         127 KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHH  178 (274)
T ss_dssp             HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred             HHhccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhh
Confidence            34457899999996432     23556666777777776654 999999998

>d2vgna3 d.79.3.2 (A:278-381) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: ERF1/Dom34 C-terminal domain-like
domain: Dom34
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=92.46  E-value=0.19  Score=25.86  Aligned_cols=39  Identities=13%  Similarity=0.230  Sum_probs=32.6

Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858           33 PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH   71 (72)
Q Consensus        33 ~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h   71 (72)
                      .++|.|+-...-|+..++.+.+++....+.|..|.++|.
T Consensus        39 ~LlIsd~l~r~~~~~~r~~~~~l~~~~~~~g~~v~iiS~   77 (104)
T d2vgna3          39 YLLLTDKVLHSDNIAQREEYLKLMDSVESNGGKALVLST   77 (104)
T ss_dssp             EEEEETTGGGSSCHHHHHHHHHHHHHHHHTTCEEEEECT
T ss_pred             EEEEecccccccccchHHHHHHHHHHHHhcCCEEEEEcC
Confidence            578889999999999999999999887777777777764

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=91.69  E-value=0.15  Score=29.41  Aligned_cols=43  Identities=23%  Similarity=0.250  Sum_probs=26.6

Q ss_pred             hcCCCEEEEeCC-----CCCC--CHHHHHHHHHHHHHHHhC-CceEEEEec
Q psy858           29 IGDPPLVFLDEP-----TSGV--DPISRHRLWAVLSQIQKT-GQSIVLTSH   71 (72)
Q Consensus        29 ~~~p~~lllDEP-----~~gl--d~~~~~~i~~~l~~~~~~-g~til~~~h   71 (72)
                      -.+|+++++|-.     ..+-  +......+...+++++++ +++|++++|
T Consensus       145 ~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q  195 (277)
T d1cr2a_         145 GLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICH  195 (277)
T ss_dssp             TTCCSEEEEEEEEC----------CHHHHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred             ccCcceEEEcccccccccccccchhHHHHHHHHHHHHHhhhccccceeecc
Confidence            457999999942     2221  112334456667777654 999999988

>d1x8ha_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Aeromonas hydrophila, CphA [TaxId: 644]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Zn metallo-beta-lactamase
domain: Zn metallo-beta-lactamase
species: Aeromonas hydrophila, CphA [TaxId: 644]

Probab=85.99  E-value=0.38  Score=26.90  Aligned_cols=36  Identities=8%  Similarity=0.205  Sum_probs=27.2

Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858           33 PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH   71 (72)
Q Consensus        33 ~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h   71 (72)
                      .+++.|   +|.++...+.+.+.++++.......|++||
T Consensus        33 g~vlID---~g~~~~~~~~l~~~i~~~~~~~i~~ii~TH   68 (228)
T d1x8ha_          33 GVTVVG---ATWTPDTARELHKLIKRVSRKPVLEVINTN   68 (228)
T ss_dssp             CEEEES---CCSSHHHHHHHHHHHHTTCCSCEEEEECSS
T ss_pred             EEEEEe---CCCCHHHHHHHHHHHHHhcCCCceEEEECC
Confidence            467777   567888888898888876444567788898

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=85.34  E-value=1.5  Score=24.58  Aligned_cols=44  Identities=14%  Similarity=0.217  Sum_probs=34.8

Q ss_pred             HhcCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858           28 LIGDPPLVFLDEPTSG-VDPISRHRLWAVLSQIQKTGQSIVLTSH   71 (72)
Q Consensus        28 l~~~p~~lllDEP~~g-ld~~~~~~i~~~l~~~~~~g~til~~~h   71 (72)
                      .....+++++|+--.- -++..+..+..++....+.|+.+|+++.
T Consensus        94 ~~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~  138 (213)
T d1l8qa2          94 MYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASD  138 (213)
T ss_dssp             HHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred             HHhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecC
Confidence            3568899999986443 3577788899999888878899998874

>d1x52a1 d.79.3.2 (A:8-118) Cell division protein pelota {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: ERF1/Dom34 C-terminal domain-like
domain: Cell division protein pelota
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.67  E-value=0.75  Score=23.78  Aligned_cols=39  Identities=18%  Similarity=0.261  Sum_probs=30.3

Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858           33 PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH   71 (72)
Q Consensus        33 ~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h   71 (72)
                      .++|.|+-...=|+..+..+.+++....+.|.-|.++|.
T Consensus        50 ~LLisd~l~r~~~~~~r~~i~~l~~~~~~~g~~v~iiS~   88 (111)
T d1x52a1          50 TLLISDELFRHQDVATRSRYVRLVDSVKENAGTVRIFSS   88 (111)
T ss_dssp             EEEEEHHHHTCSSHHHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred             EEEEecccccccchhhHHHHHHHHHHHHhcCCEEEEEcC
Confidence            467777777778888999888888776667777777765

>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Prokaryotic actin homolog MreB
species: Thermotoga maritima [TaxId: 2336]

Probab=80.95  E-value=0.39  Score=25.08  Aligned_cols=32  Identities=16%  Similarity=0.235  Sum_probs=26.0

Q ss_pred             CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy858           11 SGRYSGGNKRKLSTAMALIGDPPLVFLDEPTS   42 (72)
Q Consensus        11 ~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~   42 (72)
                      |..++..||+.+.=|.-.+.=..+-|++|||+
T Consensus       100 Pa~f~~~qR~at~~Aa~~AGl~vv~li~EPtA  131 (137)
T d1jcea1         100 PIGITDVERRAILDAGLEAGASKVFLIEEPMA  131 (137)
T ss_dssp             CTTCCHHHHHHHHHHHHHTTCSEEEEEEHHHH
T ss_pred             ecccCHHHHHHHHHHHHHcCCCEEEEeCCHHH
Confidence            56788888888888877776667899999986

>d1th8b_ c.13.2.1 (B:) Anti-sigma factor antagonist SpoIIaa {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: SpoIIaa-like
family: Anti-sigma factor antagonist SpoIIaa
domain: Anti-sigma factor antagonist SpoIIaa
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=80.88  E-value=1.1  Score=22.39  Aligned_cols=41  Identities=15%  Similarity=0.166  Sum_probs=33.8

Q ss_pred             cCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858           30 GDPPLVFLD-EPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS   70 (72)
Q Consensus        30 ~~p~~lllD-EP~~gld~~~~~~i~~~l~~~~~~g~til~~~   70 (72)
                      .+++.+++| .....+|......+.++.+..++.|..++++.
T Consensus        40 ~~~~~iilDls~v~~iDssg~~~L~~~~~~~~~~g~~l~l~~   81 (115)
T d1th8b_          40 RAIRHIVLNLGQLTFMDSSGLGVILGRYKQIKNVGGQMVVCA   81 (115)
T ss_dssp             SCCCEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCCEEEES
T ss_pred             CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence            346788998 56778999999999999999887787777764

>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: ATP:corrinoid adenosyltransferase CobA
species: Salmonella typhimurium [TaxId: 90371]

Probab=80.82  E-value=0.46  Score=26.12  Aligned_cols=49  Identities=18%  Similarity=0.257  Sum_probs=31.4

Q ss_pred             HHHHHHHhc--CCCEEEEeCCCC--CCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858           22 LSTAMALIG--DPPLVFLDEPTS--GVDPISRHRLWAVLSQIQKTGQSIVLTSH   71 (72)
Q Consensus        22 ~~ia~~l~~--~p~~lllDEP~~--gld~~~~~~i~~~l~~~~~~g~til~~~h   71 (72)
                      ...++..+.  +.+++||||-..  .+.....+.+.++|.. +.++.-+|++.+
T Consensus        83 ~~~a~~~~~~~~~dllILDEi~~Ai~~gli~~~~v~~ll~~-rp~~~evVlTGr  135 (157)
T d1g5ta_          83 WQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA-RPGHQTVIITGR  135 (157)
T ss_dssp             HHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT-SCTTCEEEEECS
T ss_pred             HHHHHHHhhcCccCEEeHHHHHHHHHcCCCCHHHHHHHHHh-CCCCCEEEEECC
Confidence            444554433  368999999755  3344555677777754 345778888765

>d1mqoa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Zn metallo-beta-lactamase
domain: Zn metallo-beta-lactamase
species: Bacillus cereus [TaxId: 1396]

Probab=80.61  E-value=1.9  Score=23.95  Aligned_cols=37  Identities=22%  Similarity=0.243  Sum_probs=27.0

Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858           33 PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR   72 (72)
Q Consensus        33 ~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~   72 (72)
                      .++|+|   ++.++...+.+.+.+++......+.++.||.
T Consensus        45 ~~iLID---t~~~~~~~~~l~~~i~~~~~~pi~~vi~TH~   81 (221)
T d1mqoa_          45 GLVLVD---SSWDDKLTKELIEMVEKKFQKRVTDVIITHA   81 (221)
T ss_dssp             EEEEES---CCSSHHHHHHHHHHHHHHHTSCEEEEECCCC
T ss_pred             EEEEEe---CCCCHHHHHHHHHHHHHhcCCCceEEEECCC
Confidence            377778   3567788888888887754345788999983

>d1znba_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacteroides fragilis [TaxId: 817]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Zn metallo-beta-lactamase
domain: Zn metallo-beta-lactamase
species: Bacteroides fragilis [TaxId: 817]

Probab=80.53  E-value=0.98  Score=25.02  Aligned_cols=38  Identities=11%  Similarity=0.201  Sum_probs=27.0

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858           31 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH   71 (72)
Q Consensus        31 ~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h   71 (72)
                      +-.++|+|   +|.++...+.+.+.+++......+.|+.||
T Consensus        43 ~~~~iliD---~g~~~~~~~~l~~~i~~~~~~~i~~vi~TH   80 (230)
T d1znba_          43 NHQAALLD---TPINDAQTETLVNWVADSLHAKVTTFIPNH   80 (230)
T ss_dssp             TTEEEEES---CCSSHHHHHHHHHHHHHHHCCEEEEEECSS
T ss_pred             CCEEEEEE---CCCCHHHHHHHHHHHHHhcCCcceEEEECC
Confidence            44577788   467788788888888775433466788888