Psyllid ID: psy8637

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210------
Protein Sequence
MKNIECKSYTRPTADYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSDLNETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIPLHGNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYATPVFKPRTTLSNNENKYVNHVDAFTDDDFIRLWEGLFFSMWMSDKPLIQKY
Secondary Structure (PSIPRED)
ccccccccccccccccccccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccccccEEEEEEEEEEcccccccHHHHHHHHcccccccccccccccccEEEEEcccccEEEEEEccccccEEEEEEEEEEEEcccccEEEEEEEccccccccccccccccccccccccccccccEEEEEEccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEccccccccccccEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEccccccEEEEEEEEEccccccccHHHHHHHHcccccccccccccccccEEEEEccccEEEEEEccccccEEEEEEEEEEEEEccccEEEEEEEEccccccccccccccccccccccccccccccEEEEEEccccccccccccHHccc
Coil and Loop (DISEMBL)
mkniecksytrptadyknLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLklsdlnetdteeCVIIGTlfkhqqlkpNILKEISEelklvpqpqhthfvsdsdeliledelqriplhgnidihnQVTGVVVAIkgtpvgngkfkvsdvcyatpvfkprttlsnnenkyvnhvdaftdddFIRLWEGLFFSmwmsdkpliqky
Flexible Loop (DISEMBL)
mkniecksytrptadyknLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLArvsqkwgksvsvlklsdlnetdtEECVIIGtlfkhqqlkpNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIPLHGNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYATPvfkprttlsnnenkYVNHVDAFTDDDFIRLWEGLFFSmwmsdkpliqky
Low Complexity Region (SEG)
MKNIECKSYTRPTADYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSDLNETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIPLHGNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYATPVFKPRTTLSNNENKYVNHVDAFTDDDFIRLWEGLFFSMWMSDKPLIQKY
Disordered region (IsUnstruct)
************TADYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSDLNETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIPLHGNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYATPVFKPRTTLSNNENKYVNHVDAFTDDDFIRLWEGLFFSMWMS********
Disordered Region (DISOPRED)
***********PTADYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSDLNETDTEECVIIGTLFKHQQLKPNILKEISEEL***PQPQ**HFVSDSDELILEDELQRIPLHGNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYATPVFK***********************FIRLWEGLFFSMWMSD**LI***
Disordered Region (DISEMBL)
MKNIECKSYTRPTADYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSDLNETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIPLHGNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYATPVFKPRTTLSNNENKYVNHVDAFTDDDFIRLWEGLFFSMWMSDKPLIQKY
Disordered Region (DISPRO)
******KSYTRPTADYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSDLNETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIPLHGNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYATPVFK********************DDDFIRLWEGLFFSMWMSDKP*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKNIECKSYTRPTADYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSDLNETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIPLHGNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYATPVFKPRTTLSNNENKYVNHVDAFTDDDFIRLWEGLFFSMWMSDKPLIQKY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	216	2.2.26 [Sep-21-2011]
O93610	463	DNA polymerase delta subu	N/A	N/A	0.796	0.371	0.471	2e-39
O35654	469	DNA polymerase delta subu	yes	N/A	0.703	0.324	0.5	4e-39
Q6AXY4	469	DNA polymerase delta subu	yes	N/A	0.703	0.324	0.5	6e-39
P49004	469	DNA polymerase delta subu	yes	N/A	0.703	0.324	0.5	1e-38
P49005	469	DNA polymerase delta subu	yes	N/A	0.703	0.324	0.5	4e-38
Q9W088	431	DNA polymerase delta smal	yes	N/A	0.689	0.345	0.436	4e-30
Q9LRE5	429	DNA polymerase delta smal	yes	N/A	0.810	0.407	0.390	2e-24
O48520	440	DNA polymerase delta smal	yes	N/A	0.805	0.395	0.368	2e-20
P46957	487	DNA polymerase delta smal	yes	N/A	0.699	0.310	0.345	3e-15
P87324	462	DNA polymerase subunit de	yes	N/A	0.722	0.337	0.283	7e-13

>sp|O93610|DPOD2_XENLA DNA polymerase delta subunit 2 OS=Xenopus laevis GN=pold2 PE=2 SV=1

 Score =  162 bits (410), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 84/178 (47%), Positives = 114/178 (64%), Gaps = 6/178 (3%)

Query: 8   SYTRPT-ADYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKL 66
           ++TR +   Y N S  FRL  + +++Q+AHIYA RL +MR  L+    Q+WG  ++V KL
Sbjct: 23  TFTRVSNTQYSNCSSIFRLGERTFTRQYAHIYATRLEQMRPLLIKSAKQRWGDDIAVRKL 82

Query: 67  SDLNETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQ 126
            +L     E+C +IGTLFK  +L+P+IL+EISEE  L+PQP    ++SDSDELILEDELQ
Sbjct: 83  CELQ--GGEKCCVIGTLFKSMELQPSILREISEEHNLLPQPARQKYISDSDELILEDELQ 140

Query: 127 RIPLHGNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYAT-PVFKPRTTLSNNENKYV 183
           RI L G  D+   VTG V+A+ G     GKF V D C  + PV  P   LS  E+++V
Sbjct: 141 RIKLEGATDVQQLVTGAVLAVLGAEEDAGKFVVEDFCLTSLPVQSPLPRLS--EDRFV 196

The function of the small subunit is not yet clear.
Xenopus laevis (taxid: 8355)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 7

>sp|O35654|DPOD2_MOUSE DNA polymerase delta subunit 2 OS=Mus musculus GN=Pold2 PE=2 SV=2

 Score =  161 bits (407), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 77/154 (50%), Positives = 104/154 (67%), Gaps = 2/154 (1%)

Query: 12  PTADYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSDLNE 71
           P A Y N SQ FRL  + +++Q+AHIYA RL +MR  L++R  Q WG  V V KL +L  
Sbjct: 28  PVATYTNSSQPFRLGERSFNRQYAHIYATRLIQMRPFLVSRAQQHWGSRVEVKKLCELQP 87

Query: 72  TDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIPLH 131
              E+C ++GTLFK   L+P+IL+EISEE  LVPQP  + ++   DEL+LEDELQRI L 
Sbjct: 88  G--EQCCVVGTLFKAMSLQPSILREISEEHNLVPQPPRSKYIHPDDELVLEDELQRIKLK 145

Query: 132 GNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYA 165
           G ID+   VTG V+A+ G+   +G+F+V D C+A
Sbjct: 146 GTIDVSKLVTGTVLAVLGSAKDDGRFQVEDHCFA 179

The function of the small subunit is not yet clear.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 7

>sp|Q6AXY4|DPOD2_RAT DNA polymerase delta subunit 2 OS=Rattus norvegicus GN=Pold2 PE=1 SV=1

 Score =  160 bits (405), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 77/154 (50%), Positives = 104/154 (67%), Gaps = 2/154 (1%)

Query: 12  PTADYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSDLNE 71
           P A Y N SQ FRL  + +++Q+AHIYA RL +MR  L++R  Q WG  V V KL +L  
Sbjct: 28  PVATYTNSSQPFRLGERSFNRQYAHIYATRLIQMRPFLVSRAQQHWGSQVEVKKLCELQP 87

Query: 72  TDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIPLH 131
              E+C ++GTLFK   L+P+IL+EISEE  L+PQP  + ++   DEL+LEDELQRI L 
Sbjct: 88  G--EQCCVVGTLFKAMPLQPSILREISEEHNLIPQPPRSKYIHPDDELVLEDELQRIKLK 145

Query: 132 GNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYA 165
           G ID+   VTG V+A+ G+   +GKF+V D C+A
Sbjct: 146 GTIDVSKLVTGTVLAVFGSVKDDGKFQVEDHCFA 179

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 7

>sp|P49004|DPOD2_BOVIN DNA polymerase delta subunit 2 OS=Bos taurus GN=POLD2 PE=1 SV=2

 Score =  159 bits (403), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 77/154 (50%), Positives = 103/154 (66%), Gaps = 2/154 (1%)

Query: 12  PTADYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSDLNE 71
           P   Y N SQ FRL  + +S+Q+AHIYA RL +MR  L++R  Q+WG  V V KL +L  
Sbjct: 28  PVVTYTNSSQPFRLGERSFSRQYAHIYATRLIQMRPFLVSRAQQRWGSGVLVKKLCELQP 87

Query: 72  TDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIPLH 131
              E+C ++GTLFK   L+P+IL+E+SEE  L+PQP  + ++   DELILEDELQRI L 
Sbjct: 88  G--EKCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELILEDELQRIKLE 145

Query: 132 GNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYA 165
           G ID+   VTG V+A+ G+   +GKF V D C+A
Sbjct: 146 GTIDVSKLVTGTVLAVLGSAGDDGKFLVEDHCFA 179

The function of the small subunit is not yet clear.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 7

>sp|P49005|DPOD2_HUMAN DNA polymerase delta subunit 2 OS=Homo sapiens GN=POLD2 PE=1 SV=1

 Score =  157 bits (398), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 77/154 (50%), Positives = 101/154 (65%), Gaps = 2/154 (1%)

Query: 12  PTADYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSDLNE 71
           P A Y N SQ FRL  + +S+Q+AHIYA RL +MR  L  R  Q WG  V V KL +L  
Sbjct: 28  PVATYTNSSQPFRLGERSFSRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQP 87

Query: 72  TDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIPLH 131
              E+C ++GTLFK   L+P+IL+E+SEE  L+PQP  + ++   DEL+LEDELQRI L 
Sbjct: 88  E--EKCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLK 145

Query: 132 GNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYA 165
           G ID+   VTG V+A+ G+   +GKF V D C+A
Sbjct: 146 GTIDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFA 179

The function of the small subunit is not yet clear.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 7

>sp|Q9W088|DPOD2_DROME DNA polymerase delta small subunit OS=Drosophila melanogaster GN=CG12018 PE=2 SV=1

 Score =  131 bits (329), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 65/149 (43%), Positives = 89/149 (59%)

Query: 16  YKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSDLNETDTE 75
           Y+NLS  FRL   DY KQF H+YA RL +M   L     +KWG    + KL +L      
Sbjct: 9   YENLSSIFRLKGHDYQKQFFHLYAHRLAEMTRLLTPLAQKKWGNKEPIKKLCELRGEQDV 68

Query: 76  ECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIPLHGNID 135
            C++IGT+FKHQ  KP+IL++ISEE +L PQP   ++    D+++LEDELQR+ L G ++
Sbjct: 69  HCILIGTIFKHQAHKPSILRDISEENQLAPQPPRQNYSDPEDKIVLEDELQRVRLQGKLN 128

Query: 136 IHNQVTGVVVAIKGTPVGNGKFKVSDVCY 164
                TGVV A  G    +G F V D+ +
Sbjct: 129 GQLLATGVVCAALGGTDSDGFFNVEDILF 157

The function of the small subunit is not yet clear.

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 7

>sp|Q9LRE5|DPOD2_ORYSJ DNA polymerase delta small subunit OS=Oryza sativa subsp. japonica GN=POLD2 PE=2 SV=1

 Score =  112 bits (280), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/182 (39%), Positives = 101/182 (55%), Gaps = 7/182 (3%)

Query: 11  RPTADYKNLSQCFRLASKDY-SKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSDL 69
           R  A+Y NL + + +  + Y  +Q++HIY  RL+ MR  L A V   W   + V  +  L
Sbjct: 3   RKQAEYSNLDERYAIQGEKYQGQQYSHIYFTRLHHMRNLLHALVP-SWKPHLPVTTVLGL 61

Query: 70  NETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIP 129
            E   ++C+I+GTL+KH +LKP+IL E S+E   +P  +  +F+   D LILEDE  R+ 
Sbjct: 62  EEG--KDCIIVGTLYKHMKLKPSILDEYSKERSAIPLVKPHNFMHPDDHLILEDESGRVT 119

Query: 130 LHGNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYATPVFKPRTTL-SNNENKYVNHVDA 188
           L G I     VTGVV+A+ G     G F V D+  A     P+ TL S NE+KYV  V  
Sbjct: 120 LAGAIPPAAYVTGVVIALHGKETSAGNFLVEDILEAG--IPPQITLPSINEDKYVVFVSG 177

Query: 189 FT 190
            +
Sbjct: 178 LS 179

The function of the small subunit is not yet clear.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 7

>sp|O48520|DPOD2_ARATH DNA polymerase delta small subunit OS=Arabidopsis thaliana GN=POLD2 PE=2 SV=2

 Score = 98.6 bits (244), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/179 (36%), Positives = 99/179 (55%), Gaps = 5/179 (2%)

Query: 7   KSYTRPTADYKNLSQCFRLASKDY-SKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLK 65
           K + R  +DY +L + F +  + Y  +Q++ IY  RL+ MR  LL  ++  W   + V K
Sbjct: 7   KIHERKQSDYNSLDERFEIQKEMYRGQQYSQIYFARLHLMR-TLLYSLAPTWKSHLPVCK 65

Query: 66  LSDLNETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDEL 125
           +  L +   +EC+I+GTLFKH +LKP +L E S+E  + P  +  +F+   D LILEDE 
Sbjct: 66  VLGLEKG--KECIIVGTLFKHMKLKPCVLDEYSKERSVTPLVKPHNFMHPDDNLILEDES 123

Query: 126 QRIPLHGN-IDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYATPVFKPRTTLSNNENKYV 183
            R+ L G+ +     VTGVVVA+ G     G+F V DV  A    +    +   E+KYV
Sbjct: 124 GRVKLAGSALSPAIYVTGVVVALHGKETNAGEFFVEDVLEAGLPPQIERPIDLQEDKYV 182

The function of the small subunit is not yet clear.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 7

>sp|P46957|DPOD2_YEAST DNA polymerase delta small subunit OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=POL31 PE=1 SV=1

 Score = 82.0 bits (201), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 81/162 (50%), Gaps = 11/162 (6%)

Query: 18  NLSQCFRLASK--DYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVS-----VLKLSD-L 69
           N S  F+L  K  DY  Q+ HIY  RL   RE +L    ++W    +     VLK    L
Sbjct: 35  NKSNPFQLCYKKRDYGSQYYHIYQYRLKTFRERVLKECDKRWDAGFTLNGQLVLKKDKVL 94

Query: 70  NETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQ--PQHTHFVSDSDELILEDELQR 127
           +    + C  +G+++   + KPN+L E+  +    P     +T     SDE++LEDE  R
Sbjct: 95  DIQGNQPCWCVGSIYCEMKYKPNVLDEVINDTYGAPDLTKSYTDKEGGSDEIMLEDESGR 154

Query: 128 IPLHGN-IDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYATPV 168
           + L G+ I     +TGVVV I G     G F+V D+CY TP+
Sbjct: 155 VLLVGDFIRSTPFITGVVVGILGMEAEAGTFQVLDICYPTPL 196

DNA polymerase delta (DNA polymerase III) participates in chromosomal DNA replication. It is required during synthesis of the leading and lagging DNA strands at the replication fork and binds at/or near replication origins and moves along DNA with the replication fork. It has 3'-5' proofreading exonuclease activity that correct errors arising during DNA replication. It is also involved in DNA synthesis during DNA repair.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 7

>sp|P87324|DPOD2_SCHPO DNA polymerase subunit delta-2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cdc1 PE=1 SV=1

 Score = 73.9 bits (180), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 85/166 (51%), Gaps = 10/166 (6%)

Query: 23  FRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSDLNETDTEECVIIGT 82
             L+ + YS+Q+A IY  RL  +R  +    S+KW     + ++ D+     E+C ++ T
Sbjct: 18  LSLSQQTYSQQYASIYFARLTALRPRITEAASKKWPDKQRLERVLDVKSD--EDCWVVAT 75

Query: 83  LFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSD------ELILEDELQRIPLHGN-ID 135
            +    LKPN++ ++++   +V   + + +VS  D      E  LED+  RI   G+ + 
Sbjct: 76  AYMTTALKPNVMNDVTQLHTIVTTTEESPYVSPEDAASGDIEYALEDDYGRIDCSGSFLY 135

Query: 136 IHNQVTGVVVAIKGTPVGNGKFKVSDVCYATPVFKPRTTLSNNENK 181
               VTGVV+A+ G     G+F V DVC+   +F     ++ +E++
Sbjct: 136 DAGVVTGVVLAVLGHEDEQGRFVVVDVCFPG-IFSHSIPMTTDESQ 180

Required for replication of the leading DNA strand and for completion of lagging strand synthesis. It is essential for cell cycle progression.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
328715058	451	PREDICTED: DNA polymerase delta subunit	0.847	0.405	0.476	1e-45
28279582	467	Pold2 protein [Danio rerio] gi|182891524	0.856	0.396	0.465	6e-42
47086937	467	DNA polymerase delta subunit 2 [Danio re	0.856	0.396	0.465	6e-42
218505643	474	DNA polymerase subunit delta-2 [Salmo sa	0.777	0.354	0.526	1e-41
157116366	455	DNA polymerase delta small subunit [Aede	0.731	0.347	0.518	2e-39
157133194	455	DNA polymerase delta small subunit [Aede	0.731	0.347	0.512	5e-39
291238172	465	PREDICTED: DNA-directed DNA polymerase d	0.824	0.382	0.450	1e-38
327279029	473	PREDICTED: DNA polymerase delta subunit	0.740	0.338	0.491	1e-38
301605980	335	PREDICTED: DNA polymerase delta subunit	0.796	0.513	0.471	4e-38
395850111	543	PREDICTED: DNA polymerase delta subunit	0.768	0.305	0.491	4e-38

>gi|328715058|ref|XP_001950214.2| PREDICTED: DNA polymerase delta subunit 2-like [Acyrthosiphon pisum]

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 91/191 (47%), Positives = 135/191 (70%), Gaps = 8/191 (4%)

Query: 1   MKNIECKSYTRPTADYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKS 60
           + N +   + R + +Y ++S  F L   +Y++QFAHIYA RL +MR+ L  ++ QKWG+ 
Sbjct: 5   VGNFDQTEFERSSFNYADMSSVFHLKDVNYTRQFAHIYAHRLVQMRDILQEKIQQKWGER 64

Query: 61  VSVLKLSDLNETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELI 120
             + KLS+L++   +EC+I+GTLFKHQ+LKP+ILKEISEE  L+PQP  THFVSD+DE+I
Sbjct: 65  CDIYKLSELHDKIGKECIIVGTLFKHQELKPSILKEISEENNLIPQPPRTHFVSDTDEII 124

Query: 121 LEDELQRIP-----LHGN-IDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYATP--VFKPR 172
           LEDELQR+P     L+GN + ++N +TG ++A+KG P   GKF V D C+ TP   +K  
Sbjct: 125 LEDELQRVPLTFDGLNGNSLSLNNIMTGCIIAVKGIPQDGGKFDVLDFCWPTPSAAYKAL 184

Query: 173 TTLSNNENKYV 183
           TT S+ +++++
Sbjct: 185 TTRSSGDDRFL 195

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|28279582|gb|AAH45410.1| Pold2 protein [Danio rerio] gi|182891524|gb|AAI64684.1| Pold2 protein [Danio rerio]

 Score =  176 bits (446), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 94/202 (46%), Positives = 120/202 (59%), Gaps = 17/202 (8%)

Query: 9   YTRPTADYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSD 68
           + R    Y   S+ FR+  + +S+Q+AHIYA RL +MR+ L  R + KWG  V + KL D
Sbjct: 23  FERAEPAYSGCSERFRIGERSFSRQYAHIYATRLMQMRQILTERATHKWGTEVPIRKLCD 82

Query: 69  LNETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRI 128
           L     EECVI+GT+FKH +L+P+IL+EISEE  L+PQP    ++S SDELILEDELQRI
Sbjct: 83  LQMG--EECVIVGTIFKHMELQPSILREISEEHNLLPQPPRAKYISQSDELILEDELQRI 140

Query: 129 PLHGNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYA-TPVFKPRTTLSNNENKYVNHVD 187
            L GNID    VTG V+AIKG    +GKF V D C A  P   PR  LS+          
Sbjct: 141 KLEGNIDAPKFVTGSVIAIKGAEQNDGKFTVEDFCMADVPPQTPRQPLSS---------- 190

Query: 188 AFTDDDFIRLWEGLFFSMWMSD 209
               D F+ L  GL  +   +D
Sbjct: 191 ----DRFVLLASGLGLNGSRAD 208

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|47086937|ref|NP_998468.1| DNA polymerase delta subunit 2 [Danio rerio] gi|16501182|emb|CAD10079.1| novel protein similar to human DNA directed polymerase delta 2, regulatory subunit (50kD) (POLD2) [Danio rerio] gi|42744580|gb|AAH66617.1| Polymerase (DNA directed), delta 2, regulatory subunit [Danio rerio] gi|213624856|gb|AAI71676.1| Polymerase (DNA directed), delta 2, regulatory subunit [Danio rerio] gi|213625950|gb|AAI71678.1| Polymerase (DNA directed), delta 2, regulatory subunit [Danio rerio]

 Score =  176 bits (446), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 94/202 (46%), Positives = 120/202 (59%), Gaps = 17/202 (8%)

Query: 9   YTRPTADYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSD 68
           + R    Y   S+ FR+  + +S+Q+AHIYA RL +MR+ L  R + KWG  V + KL D
Sbjct: 23  FERAEPAYSGCSERFRIGERSFSRQYAHIYATRLMQMRQILTERATHKWGTEVPIRKLCD 82

Query: 69  LNETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRI 128
           L     EECVI+GT+FKH +L+P+IL+EISEE  L+PQP    ++S SDELILEDELQRI
Sbjct: 83  LQMG--EECVIVGTIFKHMELQPSILREISEEHNLLPQPPRAKYISQSDELILEDELQRI 140

Query: 129 PLHGNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYA-TPVFKPRTTLSNNENKYVNHVD 187
            L GNID    VTG V+AIKG    +GKF V D C A  P   PR  LS+          
Sbjct: 141 KLEGNIDAPKFVTGSVIAIKGAEQNDGKFTVEDFCMADVPPQTPRQPLSS---------- 190

Query: 188 AFTDDDFIRLWEGLFFSMWMSD 209
               D F+ L  GL  +   +D
Sbjct: 191 ----DRFVLLASGLGLNGSRAD 208

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|218505643|ref|NP_001136183.1| DNA polymerase subunit delta-2 [Salmo salar] gi|209155382|gb|ACI33923.1| DNA polymerase subunit delta-2 [Salmo salar] gi|223648556|gb|ACN11036.1| DNA polymerase subunit delta-2 [Salmo salar]

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 90/171 (52%), Positives = 113/171 (66%), Gaps = 3/171 (1%)

Query: 9   YTRPTADYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSD 68
           + R    Y   S+ F+L  + +++Q+AHIYA RL +M   L  R  QKWG  V + KL D
Sbjct: 30  FDRVKPAYSPCSERFKLGERSFNRQYAHIYATRLMQMSPLLTERAQQKWGADVRIRKLCD 89

Query: 69  LNETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRI 128
           L     E+C I+GTLFKH +L+P+ILKEISEE  L+PQP  T ++SDSDELILEDELQRI
Sbjct: 90  LQMG--EQCCIVGTLFKHMELQPSILKEISEEHNLLPQPPRTRYISDSDELILEDELQRI 147

Query: 129 PLHGNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYA-TPVFKPRTTLSNN 178
            L GNID+   VTG V+AI G    +GKF V D C A  P   PRTTLS++
Sbjct: 148 KLEGNIDVDKFVTGSVIAIYGAEKNDGKFTVDDFCTADLPPQTPRTTLSSD 198

Source: Salmo salar

Species: Salmo salar

Genus: Salmo

Family: Salmonidae

Order: Salmoniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|157116366|ref|XP_001658442.1| DNA polymerase delta small subunit [Aedes aegypti] gi|108876529|gb|EAT40754.1| AAEL007541-PB [Aedes aegypti]

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 82/158 (51%), Positives = 109/158 (68%)

Query: 7   KSYTRPTADYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKL 66
           K + R    Y N S  F   SKD+SKQF+HIYA RL++M   +  RV +KWG    + +L
Sbjct: 16  KDFKRLDVAYVNKSDKFLFKSKDFSKQFSHIYASRLSEMVGLVTERVKEKWGTEHPIKQL 75

Query: 67  SDLNETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQ 126
           ++L E   E+C+IIGTLFKHQ+LKP+IL+EISEE +LVPQP  +H+  D+D LILED LQ
Sbjct: 76  AELKEDSPEKCIIIGTLFKHQELKPSILREISEENQLVPQPPRSHYTDDADILILEDALQ 135

Query: 127 RIPLHGNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCY 164
           RI L G ID+H+ VTG V A+ G   G+G+F+V D  +
Sbjct: 136 RIRLMGKIDVHSVVTGAVCAVLGYEDGDGRFRVEDYLF 173

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157133194|ref|XP_001662794.1| DNA polymerase delta small subunit [Aedes aegypti] gi|108870916|gb|EAT35141.1| AAEL012669-PA [Aedes aegypti]

 Score =  166 bits (421), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 81/158 (51%), Positives = 109/158 (68%)

Query: 7   KSYTRPTADYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKL 66
           K + R    Y N S  F   SKD+SKQF+HIYA RL++M   +  RV +KWG    + +L
Sbjct: 16  KDFKRLDVAYVNKSDKFLFKSKDFSKQFSHIYASRLSEMVGLVTERVKEKWGTEHPIKQL 75

Query: 67  SDLNETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQ 126
           ++L E   E+C+IIGTLFKHQ+LKP+IL+EISEE +LVPQP  +H+  D+D LILED LQ
Sbjct: 76  AELKEDSPEKCIIIGTLFKHQELKPSILREISEENQLVPQPPRSHYTDDADILILEDALQ 135

Query: 127 RIPLHGNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCY 164
           RI L G +D+H+ VTG V A+ G   G+G+F+V D  +
Sbjct: 136 RIRLMGKMDVHSVVTGAVCAVLGYEDGDGRFRVEDYLF 173

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291238172|ref|XP_002738996.1| PREDICTED: DNA-directed DNA polymerase delta 2-like [Saccoglossus kowalevskii]

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 87/193 (45%), Positives = 118/193 (61%), Gaps = 15/193 (7%)

Query: 9   YTRPTADYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSD 68
           + R +  YKNLS  FR+ ++ +S+Q+AH+YA RL  MR  L     +KWG ++ + KL D
Sbjct: 19  FQRQSCSYKNLSDRFRVKNRSFSRQYAHLYAERLLSMRPMLTRAAKKKWGDAIRLKKLCD 78

Query: 69  LNETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRI 128
           L     E+C +IGTLFKH  LKP+ILKEISEE+ L+PQP  + +  +SD LILEDELQRI
Sbjct: 79  LKLG--EKCCVIGTLFKHMNLKPSILKEISEEINLMPQPVKSKYTDESDVLILEDELQRI 136

Query: 129 PLHGNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYATPVFKPRTTLSNNENKYVNHVDA 188
            L G +D+H  VTG++VA+ G     G F+V D CYA    + + +LS            
Sbjct: 137 TLVGKLDVHTAVTGIIVAVYGCEKDGGLFQVDDFCYAELPEQVKPSLSK----------- 185

Query: 189 FTDDDFIRLWEGL 201
             DD F+ L  GL
Sbjct: 186 --DDKFVALVSGL 196

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|327279029|ref|XP_003224261.1| PREDICTED: DNA polymerase delta subunit 2-like [Anolis carolinensis]

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 82/167 (49%), Positives = 110/167 (65%), Gaps = 7/167 (4%)

Query: 12  PTADYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSDLNE 71
           P + Y N SQ FRL  + +++Q+AHIYA RL +MR  L+ R  +KWG +++V KL +L  
Sbjct: 29  PASSYTNCSQNFRLGERTFNRQYAHIYATRLIQMRPLLVERARRKWGSNITVKKLCELQV 88

Query: 72  TDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIPLH 131
              E+C ++GTLFK  QL+P+IL+EISEE  L PQP  T ++  SDELILEDELQRI L 
Sbjct: 89  A--EKCCVVGTLFKSMQLQPSILREISEEHNLPPQPPRTKYIHQSDELILEDELQRIKLE 146

Query: 132 GNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYA-----TPVFKPRT 173
           GNI I   VTG ++A+ G+   +GKF V D C+A      P+  P T
Sbjct: 147 GNIQIDKLVTGTILAVYGSEGDDGKFLVEDHCFADMPTQLPMMGPNT 193

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|301605980|ref|XP_002932622.1| PREDICTED: DNA polymerase delta subunit 2-like [Xenopus (Silurana) tropicalis]

 Score =  163 bits (413), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 84/178 (47%), Positives = 114/178 (64%), Gaps = 6/178 (3%)

Query: 8   SYTRPT-ADYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKL 66
           ++TR +   Y N S  FRL  + +++Q+AHIYA RL +MR  L+ R  Q WG  V+V KL
Sbjct: 23  TFTRVSNTQYANCSSVFRLGERTFTRQYAHIYATRLEQMRPLLIKRAKQLWGDDVAVRKL 82

Query: 67  SDLNETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQ 126
            +L     E+C ++GTLFK  +L+P+IL+EISEE  L+PQP    ++SDSDELILEDELQ
Sbjct: 83  CELQ--GEEKCCVVGTLFKSMELQPSILREISEEHNLLPQPARHKYISDSDELILEDELQ 140

Query: 127 RIPLHGNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYAT-PVFKPRTTLSNNENKYV 183
           RI L G  D+   VTG V+A+ G+    GKF V D C  + P   P   LS  E+++V
Sbjct: 141 RIKLEGATDVQQLVTGAVLAVLGSEGDAGKFMVEDFCLTSLPAQSPLPRLS--EDRFV 196

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395850111|ref|XP_003797642.1| PREDICTED: DNA polymerase delta subunit 2 [Otolemur garnettii]

 Score =  163 bits (413), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 83/169 (49%), Positives = 110/169 (65%), Gaps = 3/169 (1%)

Query: 12  PTADYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSDLNE 71
           P A Y N SQ FRL  + +S+Q+AHIYA RL +MR  L+ R  Q+WG  V V KL +L  
Sbjct: 102 PVATYTNSSQPFRLGERSFSRQYAHIYATRLIQMRPFLVNRAKQQWGSGVEVKKLCELQP 161

Query: 72  TDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIPLH 131
              E+C ++GTLFK  QL+P+IL+EISEE  L+PQP  + ++   DEL+LEDELQRI L 
Sbjct: 162 G--EKCCVVGTLFKAMQLQPSILREISEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLK 219

Query: 132 GNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYATPVF-KPRTTLSNNE 179
           G ID+   VTG V+A+ G+   +GKF V D C+A     KP  TL  ++
Sbjct: 220 GTIDVSKLVTGTVLAVLGSVRDDGKFLVEDHCFADLALQKPMPTLDTDQ 268

Source: Otolemur garnettii

Species: Otolemur garnettii

Genus: Otolemur

Family: Galagidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
ZFIN|ZDB-GENE-030616-157	467	pold2 "polymerase (DNA directe	0.777	0.359	0.514	2e-40
MGI|MGI:1097163	469	Pold2 "polymerase (DNA directe	0.703	0.324	0.5	1.3e-36
RGD|1304954	469	Pold2 "polymerase (DNA directe	0.703	0.324	0.5	1.3e-36
UNIPROTKB|P49004	469	POLD2 "DNA polymerase delta su	0.703	0.324	0.5	3.5e-36
UNIPROTKB|H9GW60	511	POLD2 "Uncharacterized protein	0.759	0.320	0.467	7.2e-36
UNIPROTKB|F1SSF8	469	POLD2 "Uncharacterized protein	0.703	0.324	0.5	7.2e-36
UNIPROTKB|C9JLE1	220	POLD2 "DNA polymerase delta su	0.703	0.690	0.5	1.2e-35
UNIPROTKB|F8W8R3	455	POLD2 "DNA polymerase delta su	0.703	0.334	0.5	1.2e-35
UNIPROTKB|P49005	469	POLD2 "DNA polymerase delta su	0.703	0.324	0.5	1.2e-35
FB|FBgn0027903	431	CG12018 [Drosophila melanogast	0.879	0.440	0.377	1e-29

ZFIN|ZDB-GENE-030616-157 pold2 "polymerase (DNA directed), delta 2, regulatory subunit" [Danio rerio (taxid:7955)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 88/171 (51%), Positives = 112/171 (65%)

Query:     9 YTRPTADYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSD 68
             + R    Y   S+ FR+  + +S+Q+AHIYA RL +MR+ L  R + KWG  V + KL D
Sbjct:    23 FERAEPAYSGCSERFRIGERSFSRQYAHIYATRLMQMRQILTERATHKWGTEVPIRKLCD 82

Query:    69 LNETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRI 128
             L     EECVI+GT+FKH +L+P+IL+EISEE  L+PQP    ++S SDELILEDELQRI
Sbjct:    83 LQMG--EECVIVGTIFKHMELQPSILREISEEHNLLPQPPRAKYISQSDELILEDELQRI 140

Query:   129 PLHGNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYA-TPVFKPRTTLSNN 178
              L GNID    VTG V+AIKG    +GKF V D C A  P   PR  LS++
Sbjct:   141 KLEGNIDAPKFVTGSVIAIKGAEQNDGKFTVEDFCMADVPPQTPRQPLSSD 191

GO:0006260 "DNA replication" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA

MGI|MGI:1097163 Pold2 "polymerase (DNA directed), delta 2, regulatory subunit" [Mus musculus (taxid:10090)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 77/154 (50%), Positives = 104/154 (67%)

Query:    12 PTADYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSDLNE 71
             P A Y N SQ FRL  + +++Q+AHIYA RL +MR  L++R  Q WG  V V KL +L  
Sbjct:    28 PVATYTNSSQPFRLGERSFNRQYAHIYATRLIQMRPFLVSRAQQHWGSRVEVKKLCELQP 87

Query:    72 TDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIPLH 131
                E+C ++GTLFK   L+P+IL+EISEE  LVPQP  + ++   DEL+LEDELQRI L 
Sbjct:    88 G--EQCCVVGTLFKAMSLQPSILREISEEHNLVPQPPRSKYIHPDDELVLEDELQRIKLK 145

Query:   132 GNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYA 165
             G ID+   VTG V+A+ G+   +G+F+V D C+A
Sbjct:   146 GTIDVSKLVTGTVLAVLGSAKDDGRFQVEDHCFA 179

GO:0003677 "DNA binding" evidence=IEA

GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0006261 "DNA-dependent DNA replication" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

RGD|1304954 Pold2 "polymerase (DNA directed), delta 2, accessory subunit" [Rattus norvegicus (taxid:10116)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 77/154 (50%), Positives = 104/154 (67%)

Query:    12 PTADYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSDLNE 71
             P A Y N SQ FRL  + +++Q+AHIYA RL +MR  L++R  Q WG  V V KL +L  
Sbjct:    28 PVATYTNSSQPFRLGERSFNRQYAHIYATRLIQMRPFLVSRAQQHWGSQVEVKKLCELQP 87

Query:    72 TDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIPLH 131
                E+C ++GTLFK   L+P+IL+EISEE  L+PQP  + ++   DEL+LEDELQRI L 
Sbjct:    88 G--EQCCVVGTLFKAMPLQPSILREISEEHNLIPQPPRSKYIHPDDELVLEDELQRIKLK 145

Query:   132 GNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYA 165
             G ID+   VTG V+A+ G+   +GKF+V D C+A
Sbjct:   146 GTIDVSKLVTGTVLAVFGSVKDDGKFQVEDHCFA 179

GO:0003677 "DNA binding" evidence=IEA

GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0006261 "DNA-dependent DNA replication" evidence=IMP

GO:0043625 "delta DNA polymerase complex" evidence=IC

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|P49004 POLD2 "DNA polymerase delta subunit 2" [Bos taurus (taxid:9913)]

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 77/154 (50%), Positives = 103/154 (66%)

Query:    12 PTADYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSDLNE 71
             P   Y N SQ FRL  + +S+Q+AHIYA RL +MR  L++R  Q+WG  V V KL +L  
Sbjct:    28 PVVTYTNSSQPFRLGERSFSRQYAHIYATRLIQMRPFLVSRAQQRWGSGVLVKKLCELQP 87

Query:    72 TDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIPLH 131
                E+C ++GTLFK   L+P+IL+E+SEE  L+PQP  + ++   DELILEDELQRI L 
Sbjct:    88 G--EKCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELILEDELQRIKLE 145

Query:   132 GNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYA 165
             G ID+   VTG V+A+ G+   +GKF V D C+A
Sbjct:   146 GTIDVSKLVTGTVLAVLGSAGDDGKFLVEDHCFA 179

GO:0006260 "DNA replication" evidence=TAS

GO:0005634 "nucleus" evidence=IC

GO:0003887 "DNA-directed DNA polymerase activity" evidence=TAS

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|H9GW60 POLD2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 79/169 (46%), Positives = 109/169 (64%)

Query:    12 PTADYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSDLNE 71
             P + Y N SQ FRL  + +S+Q+AHIYA RL +MR  L++R  Q WG  + + KL +L  
Sbjct:    70 PVSTYTNSSQSFRLGERSFSRQYAHIYATRLLQMRPFLVSRAQQHWGDGIQIKKLCELQP 129

Query:    72 TDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIPLH 131
                E+C ++GTLFK   L+P+IL+EISEE  L+PQP  + ++   D+L+LEDELQRI L 
Sbjct:   130 G--EKCCVVGTLFKAMPLQPSILREISEEHNLLPQPPRSKYIHPDDQLVLEDELQRIKLE 187

Query:   132 GNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYA--TPVFKPRTTLSNN 178
             G+ID    VTG V+A+ G+   +GKF V D C+A   P  KP  TL  +
Sbjct:   188 GSIDASKLVTGTVLAVLGSVRDSGKFLVEDHCFAELAPQ-KPAPTLDTD 235

GO:0005634 "nucleus" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|F1SSF8 POLD2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 77/154 (50%), Positives = 104/154 (67%)

Query:    12 PTADYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSDLNE 71
             P   Y N SQ FRL  + +++Q+AHIYA RL +MR  L++R  Q+WG  V V KL +L  
Sbjct:    28 PVVTYTNSSQPFRLGERSFNRQYAHIYATRLVQMRPFLVSRARQRWGGGVVVKKLCELQP 87

Query:    72 TDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIPLH 131
                E+C ++GTLFK  QL+P+IL+E+SEE  L+PQP  + ++   DELILEDELQRI L 
Sbjct:    88 G--EKCCVVGTLFKAMQLQPSILREVSEEHNLLPQPPRSKYIHPDDELILEDELQRIKLE 145

Query:   132 GNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYA 165
             G ID+   VTG V+A+ G+   +GKF V D C+A
Sbjct:   146 GAIDVSKLVTGTVLALLGSAGDDGKFLVEDHCFA 179

GO:0005634 "nucleus" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|C9JLE1 POLD2 "DNA polymerase delta subunit 2" [Homo sapiens (taxid:9606)]

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 77/154 (50%), Positives = 101/154 (65%)

Query:    12 PTADYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSDLNE 71
             P A Y N SQ FRL  + +S+Q+AHIYA RL +MR  L  R  Q WG  V V KL +L  
Sbjct:    28 PVATYTNSSQPFRLGERSFSRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQP 87

Query:    72 TDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIPLH 131
                E+C ++GTLFK   L+P+IL+E+SEE  L+PQP  + ++   DEL+LEDELQRI L 
Sbjct:    88 E--EKCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLK 145

Query:   132 GNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYA 165
             G ID+   VTG V+A+ G+   +GKF V D C+A
Sbjct:   146 GTIDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFA 179

GO:0006261 "DNA-dependent DNA replication" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|F8W8R3 POLD2 "DNA polymerase delta subunit 2" [Homo sapiens (taxid:9606)]

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 77/154 (50%), Positives = 101/154 (65%)

Query:    12 PTADYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSDLNE 71
             P A Y N SQ FRL  + +S+Q+AHIYA RL +MR  L  R  Q WG  V V KL +L  
Sbjct:    28 PVATYTNSSQPFRLGERSFSRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQP 87

Query:    72 TDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIPLH 131
                E+C ++GTLFK   L+P+IL+E+SEE  L+PQP  + ++   DEL+LEDELQRI L 
Sbjct:    88 E--EKCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLK 145

Query:   132 GNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYA 165
             G ID+   VTG V+A+ G+   +GKF V D C+A
Sbjct:   146 GTIDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFA 179

GO:0003677 "DNA binding" evidence=IEA

GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|P49005 POLD2 "DNA polymerase delta subunit 2" [Homo sapiens (taxid:9606)]

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 77/154 (50%), Positives = 101/154 (65%)

Query:    12 PTADYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSDLNE 71
             P A Y N SQ FRL  + +S+Q+AHIYA RL +MR  L  R  Q WG  V V KL +L  
Sbjct:    28 PVATYTNSSQPFRLGERSFSRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQP 87

Query:    72 TDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIPLH 131
                E+C ++GTLFK   L+P+IL+E+SEE  L+PQP  + ++   DEL+LEDELQRI L 
Sbjct:    88 E--EKCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLK 145

Query:   132 GNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYA 165
             G ID+   VTG V+A+ G+   +GKF V D C+A
Sbjct:   146 GTIDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFA 179

GO:0003677 "DNA binding" evidence=IEA

GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006260 "DNA replication" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0000722 "telomere maintenance via recombination" evidence=TAS

GO:0000723 "telomere maintenance" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006271 "DNA strand elongation involved in DNA replication" evidence=TAS

GO:0006281 "DNA repair" evidence=TAS

GO:0006283 "transcription-coupled nucleotide-excision repair" evidence=TAS

GO:0006284 "base-excision repair" evidence=TAS

GO:0006289 "nucleotide-excision repair" evidence=TAS

GO:0006297 "nucleotide-excision repair, DNA gap filling" evidence=TAS

GO:0032201 "telomere maintenance via semi-conservative replication" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

FB|FBgn0027903 CG12018 [Drosophila melanogaster (taxid:7227)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 74/196 (37%), Positives = 106/196 (54%)

Query:    16 YKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSDLNETDTE 75
             Y+NLS  FRL   DY KQF H+YA RL +M   L     +KWG    + KL +L      
Sbjct:     9 YENLSSIFRLKGHDYQKQFFHLYAHRLAEMTRLLTPLAQKKWGNKEPIKKLCELRGEQDV 68

Query:    76 ECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIPLHGNID 135
              C++IGT+FKHQ  KP+IL++ISEE +L PQP   ++    D+++LEDELQR+ L G ++
Sbjct:    69 HCILIGTIFKHQAHKPSILRDISEENQLAPQPPRQNYSDPEDKIVLEDELQRVRLQGKLN 128

Query:   136 IHNQVTGVVVAIKGTPVGNGKFKVSDVC-YATPVFKPRTTLSNNENKYV-NHVDAFTDDD 193
                  TGVV A  G    +G F V D+  Y +   KP   +  +    + + +D      
Sbjct:   129 GQLLATGVVCAALGGTDSDGFFNVEDILFYESGPQKPLAPIKRSRLLVLASGLDQLQAHK 188

Query:   194 FIRLWEGL-FFSMWMS 208
             F+   E L  F  W++
Sbjct:   189 FV---EALNLFQYWLA 201

GO:0043625 "delta DNA polymerase complex" evidence=ISS;NAS

GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS;NAS

GO:0006260 "DNA replication" evidence=IEA;NAS

GO:0003677 "DNA binding" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0006974 "response to DNA damage stimulus" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.7	LOW CONFIDENCE prediction!
4th Layer	2.7.7.7	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	216
pfam05997	210	pfam05997, Nop52, Nucleolar protein,Nop52	6e-09
COG1311	481	COG1311, HYS2, Archaeal DNA polymerase II, small s	6e-04

>gnl|CDD|218849 pfam05997, Nop52, Nucleolar protein,Nop52

 Score = 53.8 bits (130), Expect = 6e-09
 Identities = 15/26 (57%), Positives = 22/26 (84%)

Query: 190 TDDDFIRLWEGLFFSMWMSDKPLIQK 215
            + D ++LW+GLF+ MWMSDKPL+Q+
Sbjct: 36  DELDLLKLWKGLFYCMWMSDKPLVQQ 61

Nop52 believed to be involved in the generation of 28S rRNA. Length = 210

>gnl|CDD|224230 COG1311, HYS2, Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 35/155 (22%), Positives = 60/155 (38%), Gaps = 13/155 (8%)

Query: 25  LASKDYSKQFAHIYAVRLNKM-RECLLARVSQKWGKSVSVLKLSDLN-ETDTEECV---- 78
           L+  DY  Q+A IY  RL K  R  ++    ++W     + +  D+    D         
Sbjct: 40  LSKVDYIIQYASIYFARLLKALRPRIIKESVKRWPDKPVLERDLDVEYLPDVRGNSTCGG 99

Query: 79  IIGTLFKHQQLKPNILKEI---SEELKLVPQPQHTHFVSDSDELILEDELQRIPLHGN-- 133
           I+     + + +   L  I    EE + V   +         ++I E    R   +G+  
Sbjct: 100 IVEDFVPYFRDRYEKLSRIIREREEARYVSPIKKDLEGGSDVKIIGEVNDVRETKNGHFI 159

Query: 134 IDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYATPV 168
           I + +  TGVV  + G     G+F V DV +   +
Sbjct: 160 ISLED-TTGVVTVVLGKDREAGRF-VVDVLFDEVI 192

Length = 481

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	216
KOG2732|consensus	435		100.0
PRK04036	504	DNA polymerase II small subunit; Validated	99.91
KOG3911|consensus	378		99.31
PF05997	217	Nop52: Nucleolar protein,Nop52; InterPro: IPR01030	99.22
COG1311	481	HYS2 Archaeal DNA polymerase II, small subunit/DNA	99.12
KOG3818|consensus	525		95.81
cd04490	79	PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds	91.85
KOG1625|consensus	600		90.04
COG5214	581	POL12 DNA polymerase alpha-primase complex, polyme	86.65

>KOG2732|consensus

Probab=100.00  E-value=2.7e-56  Score=407.67  Aligned_cols=196  Identities=38%  Similarity=0.629  Sum_probs=178.0

Q ss_pred             ccceecccCCCceeeCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCcceeeeeecccCCCC-eEEEEEEEEeeCCC
Q psy8637          11 RPTADYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSDLNETDTE-ECVIIGTLFKHQQL   89 (216)
Q Consensus        11 R~~~~y~~~s~rF~l~~~~y~~QY~~iY~~RL~~Lr~~l~~~a~~kw~~~~~i~kll~l~~~~g~-~cvvIGTlyK~mkl   89 (216)
                      +....|+|.|++|+|..++|++||+|||++||++|||++.++|++|||++.+++++|++  +.++ +||||||+||+|++
T Consensus         6 ~~~~~~~n~s~~f~L~~~~y~~Qy~~iY~aRL~elRp~i~~~A~k~wg~~~~l~~~l~l--~~~~~~C~vVGTlfk~~~l   83 (435)
T KOG2732|consen    6 SLILNYENKSDRFRLSEKDYSRQYFHIYFARLKELRPRILELAQKKWGSGPPLKKQLDL--EKGKGECWVVGTLFKAMAL   83 (435)
T ss_pred             eccccccccccceeeccchhHHHHHHHHHHHHHHhHHHHHHHHHhhcCCCCchhhheee--ccCCccEEEEEehhhhccc
Confidence            34457899999999999999999999999999999999999999999999999999999  4666 99999999999999


Q ss_pred             CCchHHHHHhhhcCCCCCCCCCcCCCCCeEEEecCCCcEEEEec-cCCCCceeeeEEEEEeccCCCCcEEEEEEEe-cCC
Q psy8637          90 KPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIPLHGN-IDIHNQVTGVVVAIKGTPVGNGKFKVSDVCY-ATP  167 (216)
Q Consensus        90 KPsIL~e~~~e~~~~~~~~~~~y~s~~D~l~LEDesgRI~L~G~-i~~~~lVTGvVvaV~G~~~~~G~F~V~di~~-~~~  167 (216)
                      |||||||+++|+.++|++++++|.+++|+++||||+|||+|.|. ++...+||||||||+|++.++|.|.|+|+|| +.+
T Consensus        84 KPsIl~~v~~e~~~~p~~~~~~y~~ped~i~LEDe~grV~L~G~~i~~~~~vTGvvvavlG~~~e~G~F~VeDv~fp~~~  163 (435)
T KOG2732|consen   84 KPSILDEVSNEHKVAPDPEESNYHSPEDEIVLEDESGRVRLEGSFISHAVLVTGVVVAVLGKEAEAGRFLVEDVLFPGSS  163 (435)
T ss_pred             CcHHHHHHhhhhccCCCCcccccCCccceEEEecCCceEEEEeecccccceeeeEEEEEecccccCceEEEEEEeccCCC
Confidence            99999999999999999999999999999999999999999996 9999999999999999999999999999999 999


Q ss_pred             CC-CCcccCCCCCCcceeecCCCCHH-HHHHHhhHHHhhhhhcCC
Q psy8637         168 VF-KPRTTLSNNENKYVNHVDAFTDD-DFIRLWEGLFFSMWMSDK  210 (216)
Q Consensus       168 pq-~p~~~~~~~~~~yv~lvsgl~~~-d~~~l~kgl~~~~w~~d~  210 (216)
                      || .|++...++  +||||||||++. +-+.+-.-.++.+||.+.
T Consensus       164 pq~~P~~~~~~~--~~i~lVSGL~l~~~~~~~~~l~~l~D~l~g~  206 (435)
T KOG2732|consen  164 PQGKPRATLPSQ--RKIALVSGLDLGGGSKNLLRLELLVDWLRGQ  206 (435)
T ss_pred             ccCCCCCcCCCC--CEEEEEeccccCCCcchhHHHHHHHHHHhcc
Confidence            99 777766655  899999999962 123333447888998653

>PRK04036 DNA polymerase II small subunit; Validated

Probab=99.91  E-value=2.4e-24  Score=205.23  Aligned_cols=145  Identities=19%  Similarity=0.281  Sum_probs=114.8

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHhhcCCCcceeeeeecccC-CCCeEEEEEEEEeeCCCCCchHHHHHhhhcCCCCCCC
Q psy8637          31 SKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSDLNET-DTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQH  109 (216)
Q Consensus        31 ~~QY~~iY~~RL~~Lr~~l~~~a~~kw~~~~~i~kll~l~~~-~g~~cvvIGTlyK~mklKPsIL~e~~~e~~~~~~~~~  109 (216)
                      -+||+++|++||+.||+++..+++.+     ++.+|+++  + .+++|+|||||+ ++          +           
T Consensus       116 ~~~~~~~y~~R~~~L~~~l~~~~~~~-----~i~~l~~~--~~~~~~~~viG~v~-~~----------~-----------  166 (504)
T PRK04036        116 VEDFVAYFRDRYEKLSKIIRGRVNHR-----PIESLKKL--KRGGEEVSIIGMVS-DI----------R-----------  166 (504)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccc-----cHHHHhcC--ccCCceEEEEEEEE-Ee----------e-----------
Confidence            48999999999999999999999875     46789999  4 688999999997 22          1           


Q ss_pred             CCcCCCCC-eEEEecCCCcEEEEecc------C-CCCceeeeEEEEEeccCCCC-cEEEEEEEe-cCCCCCCcccCCCCC
Q psy8637         110 THFVSDSD-ELILEDELQRIPLHGNI------D-IHNQVTGVVVAIKGTPVGNG-KFKVSDVCY-ATPVFKPRTTLSNNE  179 (216)
Q Consensus       110 ~~y~s~~D-~l~LEDesgRI~L~G~i------~-~~~lVTGvVvaV~G~~~~~G-~F~V~di~~-~~~pq~p~~~~~~~~  179 (216)
                        .+++++ .++|||+||||+|.|..      + .+.+|||+||||+|++.++| .|.|+|+|| +.||+.+++....+ 
T Consensus       167 --~~~~g~~~~~LED~sgrv~l~~~~~~~~~~~~~~~lvtg~vv~v~G~~~~~g~~f~v~~i~~p~~p~~~~~~~~~~~-  243 (504)
T PRK04036        167 --STKNGHKIVELEDTTGTFPVLIMKDREDLAELADELLLDEVIGVEGTLSGDGGLIFADEIIRPDVPRTKEPPTKDEK-  243 (504)
T ss_pred             --cccCCceEEEEECCCCeEEEEeecchhhhhhhhhcccCceEEEEEEEEcCCCCEEEEEEEECCCCCccCCCCcCCCc-
Confidence              113344 78999999999999832      2 35799999999999999999 899999999 99988666544444 


Q ss_pred             CcceeecCCCCHHHH---HHHhhHHHhhhhhcCC
Q psy8637         180 NKYVNHVDAFTDDDF---IRLWEGLFFSMWMSDK  210 (216)
Q Consensus       180 ~~yv~lvsgl~~~d~---~~l~kgl~~~~w~~d~  210 (216)
                       .++||+||+.+..-   .+.|  .-+..|+++.
T Consensus       244 -~~i~~ISDlHlgs~~~~~~~l--~~li~~L~g~  274 (504)
T PRK04036        244 -VYAVFISDVHVGSKEFLEDAF--EKFIDWLNGE  274 (504)
T ss_pred             -cEEEEEcccCCCCcchhHHHH--HHHHHHHhCC
Confidence             89999999986542   2333  3456788743

>KOG3911|consensus

Probab=99.31  E-value=5.4e-13  Score=120.74  Aligned_cols=29  Identities=59%  Similarity=1.428  Sum_probs=28.0

Q ss_pred             CCCCHHHHHHHhhHHHhhhhhcCCCcccC
Q psy8637         187 DAFTDDDFIRLWEGLFFSMWMSDKPLIQK  215 (216)
Q Consensus       187 sgl~~~d~~~l~kgl~~~~w~~d~~~~q~  215 (216)
                      +|++.+|++||||||||||||||||++||
T Consensus        42 ~~F~~~dflklWKGLfY~MWmqDkPllQe   70 (378)
T KOG3911|consen   42 EGFDQDDFLKLWKGLFYCMWMQDKPLLQE   70 (378)
T ss_pred             cCCCHHHHHHHHHhhHHHHhhcCCchHHH
Confidence            57999999999999999999999999997

>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA []

Probab=99.22  E-value=2.8e-12  Score=110.74  Aligned_cols=26  Identities=62%  Similarity=1.366  Sum_probs=25.4

Q ss_pred             CHHHHHHHhhHHHhhhhhcCCCcccC
Q psy8637         190 TDDDFIRLWEGLFFSMWMSDKPLIQK  215 (216)
Q Consensus       190 ~~~d~~~l~kgl~~~~w~~d~~~~q~  215 (216)
                      +..|++||||||||||||||||++||
T Consensus        36 ~~~~~~kLWKGLfy~mWmsDkpl~Q~   61 (217)
T PF05997_consen   36 TELDMLKLWKGLFYCMWMSDKPLVQE   61 (217)
T ss_pred             CHHHHHHHHHHHHHHHHhcCCchhHH
Confidence            89999999999999999999999997

; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor

>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]

Probab=99.12  E-value=2e-11  Score=115.36  Aligned_cols=141  Identities=23%  Similarity=0.316  Sum_probs=111.7

Q ss_pred             CcchhhhhHHHHHHHH-HHHHHHHHHHHHhhcCCCcceeeeeecc---c-CCCCeEE-EEEEEEeeCCCCCchHHHHHhh
Q psy8637          27 SKDYSKQFAHIYAVRL-NKMRECLLARVSQKWGKSVSVLKLSDLN---E-TDTEECV-IIGTLFKHQQLKPNILKEISEE  100 (216)
Q Consensus        27 ~~~y~~QY~~iY~~RL-~~Lr~~l~~~a~~kw~~~~~i~kll~l~---~-~~g~~cv-vIGTlyK~mklKPsIL~e~~~e  100 (216)
                      .+.|..||+++|++|+ +.+|++...++.++|+......+.++++   + +....|+ +++-+.+.++-|++-|+++-++
T Consensus        42 ~~~y~~qy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~~~d~~~~s~~~g~vedf~~~f~~R~~kL~~ii~~  121 (481)
T COG1311          42 KVDYIIQYASIYFARLLKALRPRIIKESVKRWPDKPVLERDLDVEYLPDVRGNSTCGGIVEDFVPYFRDRYEKLSRIIRE  121 (481)
T ss_pred             HhccccccchHHHhhhhhhhccccchhhhhcccCccccccceeEEEccCcccccccceeHHHHHHHHHHHHHHHHHHHhc
Confidence            6899999999999999 9999999999999998754444444441   1 3455565 5777888889999999998776


Q ss_pred             hcCCCC-CCCC-CcCCCCC-eEEEecCCCcEEEEec-cCCCCceeeeEEEEEeccCCCCcEEEEEEEe-cCCC
Q psy8637         101 LKLVPQ-PQHT-HFVSDSD-ELILEDELQRIPLHGN-IDIHNQVTGVVVAIKGTPVGNGKFKVSDVCY-ATPV  168 (216)
Q Consensus       101 ~~~~~~-~~~~-~y~s~~D-~l~LEDesgRI~L~G~-i~~~~lVTGvVvaV~G~~~~~G~F~V~di~~-~~~p  168 (216)
                      ....+. .+.. .+-..+| ++++|+.++|....|. +-.-.-+||+|.+|+|...+.|+|.+ |+|+ ..-+
T Consensus       122 ~~~~~~~~~~~~~~~~g~dv~Iig~v~~~r~t~~gh~ii~~ed~tG~v~vvl~k~~e~~~~~~-dvl~d~vig  193 (481)
T COG1311         122 REEARYVSPIKKDLEGGSDVKIIGEVNDVRETKNGHFIISLEDTTGVVTVVLGKDREAGRFVV-DVLFDEVIG  193 (481)
T ss_pred             cccCCCcchhhcccccCCCcEEEEEEccceeeecccEEEEcccccceEEEEeccchhhhhhHH-hhcCCcccc
Confidence            543322 1222 5566677 9999999999999997 66677999999999999999999999 9999 6544

>KOG3818|consensus

Probab=95.81  E-value=0.074  Score=50.89  Aligned_cols=128  Identities=19%  Similarity=0.232  Sum_probs=83.6

Q ss_pred             ccceecccCCCceeeCCc------chhhhhHHHHHHHHHHHHHHHHHH-------------HHhhcCCCcceeeeeeccc
Q psy8637          11 RPTADYKNLSQCFRLASK------DYSKQFAHIYAVRLNKMRECLLAR-------------VSQKWGKSVSVLKLSDLNE   71 (216)
Q Consensus        11 R~~~~y~~~s~rF~l~~~------~y~~QY~~iY~~RL~~Lr~~l~~~-------------a~~kw~~~~~i~kll~l~~   71 (216)
                      =+...|...-.+|.++++      .-.+-.+++...|+..+..|+...             |+.+-=.-.||..|+.-  
T Consensus        96 ~prF~Yn~~~kkFvl~~k~~~~l~~~~~~ks~m~~~Ry~i~~qR~mR~e~Fq~pv~~s~~~~q~~~fklt~ienLL~t--  173 (525)
T KOG3818|consen   96 LPRFDYNSDRKKFVLPNKPKPSLLADPSDKSDMFRQRYFIVKQRTMRNELFQPPVSGSGRCAQLKKFKLTPIENLLST--  173 (525)
T ss_pred             CCccccCchheEEEecCCCCccccCChHHHHHHHHHHHHHHHHHHHhhhccCCCccCCchhhhccccceeEHHHhhcc--
Confidence            345567776778988431      234677888888998888877662             11100000244445442  


Q ss_pred             CCCCeEEEEEEEEeeCCCCCchHHHHHhhhcCCCCCCCCCcCCCCCeEEEecCCCcEEEEec---cCCCCceeeeEEEEE
Q psy8637          72 TDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIPLHGN---IDIHNQVTGVVVAIK  148 (216)
Q Consensus        72 ~~g~~cvvIGTlyK~mklKPsIL~e~~~e~~~~~~~~~~~y~s~~D~l~LEDesgRI~L~G~---i~~~~lVTGvVvaV~  148 (216)
                      +..+..+|.|-|-+                            -.++..+|||-||-|.|.-.   .-...++.||.|-|-
T Consensus       174 ~~~~~~lvLGlLTq----------------------------~k~G~~~lEDpsgsVqlDlsqa~fh~glf~egC~VL~E  225 (525)
T KOG3818|consen  174 RALQSFLVLGLLTQ----------------------------LKEGKFHLEDPSGSVQLDLSQAKFHHGLFCEGCFVLVE  225 (525)
T ss_pred             ccccceeeeehhhh----------------------------ccCCcEEEeCCCCcEEEeecccccccceeccceEEEEe
Confidence            34555666664321                            12788999999999999643   445679999999999


Q ss_pred             eccCCCCcEEEEEEEecCCCCCC
Q psy8637         149 GTPVGNGKFKVSDVCYATPVFKP  171 (216)
Q Consensus       149 G~~~~~G~F~V~di~~~~~pq~p  171 (216)
                      |.-.+ |.|+|..+-  .||..+
T Consensus       226 G~f~~-~vf~V~~lg--~PP~E~  245 (525)
T KOG3818|consen  226 GTFES-GVFHVNELG--FPPVER  245 (525)
T ss_pred             eeeec-ceEEEeecc--CCCCCc
Confidence            98655 999999874  455443

>cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit

Probab=91.85  E-value=0.45  Score=34.76  Aligned_cols=49  Identities=18%  Similarity=0.235  Sum_probs=38.4

Q ss_pred             eEEEecCCCcEEEEe--c-cC----CCCceeeeEEEEEeccCC-CCcEEEEEEEe-cC
Q psy8637         118 ELILEDELQRIPLHG--N-ID----IHNQVTGVVVAIKGTPVG-NGKFKVSDVCY-AT  166 (216)
Q Consensus       118 ~l~LEDesgRI~L~G--~-i~----~~~lVTGvVvaV~G~~~~-~G~F~V~di~~-~~  166 (216)
                      .+-|||.+|++.+.-  + ..    .+.+..|.++.|.|.... ++.+.|+++++ +.
T Consensus        20 ~~~leD~~G~~Ev~~F~~~~~~~~~~~~l~~d~~v~v~g~v~~~~~~l~~~~I~~~~~   77 (79)
T cd04490          20 IVELEDTTGRITVLLTKDKEELFEEAEDILPDEVIGVSGTVSKDGGLIFADEIFRPDV   77 (79)
T ss_pred             EEEEECCCCEEEEEEeCchhhhhhhhhhccCCCEEEEEEEEecCCCEEEEEEeEcCCC
Confidence            889999999999973  2 33    356889999999999853 23688999987 54

PolII is a family D DNA polymerase, having a 3-prime to 5-prime exonuclease activity. P. abyssi PolII is heterodimeric. The large subunit appears to be the polymerase, and the small subunit may be the exonuclease. The small subunit contains a calcineurin-like phosphatase superfamily domain C-terminal to this OB-fold domain.

>KOG1625|consensus

Probab=90.04  E-value=4  Score=40.36  Aligned_cols=72  Identities=18%  Similarity=0.304  Sum_probs=49.7

Q ss_pred             CCCeEEEEEEEEeeCCCCCchHHHHHhhhcCCCCCCCCCcCCCCCeEEEe----cCC-CcEEEEec-cCCCCceeeeEEE
Q psy8637          73 DTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILE----DEL-QRIPLHGN-IDIHNQVTGVVVA  146 (216)
Q Consensus        73 ~g~~cvvIGTlyK~mklKPsIL~e~~~e~~~~~~~~~~~y~s~~D~l~LE----Des-gRI~L~G~-i~~~~lVTGvVva  146 (216)
                      ..+..+.+|-|-.+...-                  ..++  ++-.++||    |++ .||+|.-+ ++.-.+-.|=|||
T Consensus       243 Sq~~v~avG~I~~d~~~~------------------~~kl--n~~Sv~Less~e~~~g~~Vrldls~l~e~SiFPGQIVa  302 (600)
T KOG1625|consen  243 SQSSVYAVGQIVCDSTKD------------------NGKL--NEESVLLESSREDSSGVRVRLDLSRLKEYSIFPGQIVA  302 (600)
T ss_pred             cccceEEEEEEecCCCCc------------------cccc--CccceEeeeccccCCCceEEeehhhccceeecCCcEEE
Confidence            567788999998774110                  0011  12234554    443 37888877 8778899999999


Q ss_pred             EEeccCCCCcEEEEEEEe
Q psy8637         147 IKGTPVGNGKFKVSDVCY  164 (216)
Q Consensus       147 V~G~~~~~G~F~V~di~~  164 (216)
                      |+|.-...+.|.|+.|.-
T Consensus       303 vkG~N~~G~~l~v~ki~~  320 (600)
T KOG1625|consen  303 VKGKNPTGEKLTVEKILP  320 (600)
T ss_pred             EeeecCCCCeEEeeeecc
Confidence            999866677799998875

>COG5214 POL12 DNA polymerase alpha-primase complex, polymerase-associated subunit B [DNA replication, recombination, and repair]

Probab=86.65  E-value=0.95  Score=43.37  Aligned_cols=71  Identities=24%  Similarity=0.385  Sum_probs=52.8

Q ss_pred             CCCCeEEEEEEEEeeCCCCCchHHHHHhhhcCCCCCCCCCcCC--CCCeEEEecC-----CCcEEEEec-cCCCCceeee
Q psy8637          72 TDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVS--DSDELILEDE-----LQRIPLHGN-IDIHNQVTGV  143 (216)
Q Consensus        72 ~~g~~cvvIGTlyK~mklKPsIL~e~~~e~~~~~~~~~~~y~s--~~D~l~LEDe-----sgRI~L~G~-i~~~~lVTGv  143 (216)
                      ...+..+++|.+.-+.                      .+|-.  +...++||-.     .-||+|.-+ ++.-.+..|-
T Consensus       200 ~sqs~~y~vGrIv~~s----------------------~~~g~~Ln~eSv~lesSr~gg~gvrVRL~l~~l~~yS~FpGQ  257 (581)
T COG5214         200 VSQSSFYTVGRIVNPS----------------------TNFGHKLNSESVFLESSRDGGNGVRVRLNLAHLQRYSVFPGQ  257 (581)
T ss_pred             cccCceEEEEEecCCC----------------------cccccccCcceeeeeeecccCCCeEEEeehhhcccccccccc
Confidence            4667788999875431                      12222  2356788865     238888876 8878889999


Q ss_pred             EEEEEeccCCCCcEEEEEEEe
Q psy8637         144 VVAIKGTPVGNGKFKVSDVCY  164 (216)
Q Consensus       144 VvaV~G~~~~~G~F~V~di~~  164 (216)
                      ||||+|.-.+.|.|.|+.|.-
T Consensus       258 IVavKGkN~~G~~ftv~~ilp  278 (581)
T COG5214         258 IVAVKGKNTDGGKFTVEAILP  278 (581)
T ss_pred             EEEEecccCCCCeEEeeeeec
Confidence            999999988889999999985

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	216
3e0j_A	476	X-Ray Structure Of The Complex Of Regulatory Subuni		3e-39

>pdb|3E0J|A Chain A, X-Ray Structure Of The Complex Of Regulatory Subunits Of Human Dna Polymerase Delta Length = 476

Iteration: 1
 Score =  157 bits (398), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 77/154 (50%), Positives = 101/154 (65%), Gaps = 2/154 (1%)
Query: 12  PTADYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSDLNE 71
           P A Y N SQ FRL  + +S+Q+AHIYA RL +MR  L  R  Q WG  V V KL +L  
Sbjct: 35  PVATYTNSSQPFRLGERSFSRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQP 94
Query: 72  TDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIPLH 131
              E+C ++GTLFK   L+P+IL+E+SEE  L+PQP  + ++   DEL+LEDELQRI L 
Sbjct: 95  E--EKCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLK 152
Query: 132 GNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYA 165
           G ID+   VTG V+A+ G+   +GKF V D C+A
Sbjct: 153 GTIDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFA 186

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	216
3e0j_A	476	DNA polymerase subunit delta-2; DNA polymerase del	5e-54

>3e0j_A DNA polymerase subunit delta-2; DNA polymerase delta, P66 subunit, P50 subunit, human, DNA replication, DNA-directed DNA polymerase; HET: DNA; 3.00A {Homo sapiens} Length = 476

 Score =  178 bits (453), Expect = 5e-54
 Identities = 77/173 (44%), Positives = 105/173 (60%), Gaps = 2/173 (1%)

Query: 11  RPTADYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSDLN 70
            P A Y N SQ FRL  + +S+Q+AHIYA RL +MR  L  R  Q WG  V V KL +L 
Sbjct: 34  VPVATYTNSSQPFRLGERSFSRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQ 93

Query: 71  ETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIPL 130
               E+C ++GTLFK   L+P+IL+E+SEE  L+PQP  + ++   DEL+LEDELQRI L
Sbjct: 94  PE--EKCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIKL 151

Query: 131 HGNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCYATPVFKPRTTLSNNENKYV 183
            G ID+   VTG V+A+ G+   +GKF V D C+A    +      + +   +
Sbjct: 152 KGTIDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFADLAPQKPAPPLDTDRFVL 204

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	216
3e0j_A	476	DNA polymerase subunit delta-2; DNA polymerase del	100.0
3flo_A	460	DNA polymerase alpha subunit B; protein-protein co	94.83

>3e0j_A DNA polymerase subunit delta-2; DNA polymerase delta, P66 subunit, P50 subunit, human, DNA replication, DNA-directed DNA polymerase; HET: DNA; 3.00A {Homo sapiens}

Probab=100.00  E-value=2.2e-58  Score=433.56  Aligned_cols=200  Identities=41%  Similarity=0.687  Sum_probs=151.9

Q ss_pred             CCccccc-eecccCCCceeeCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCcceeeeeecccCCCCeEEEEEEEEe
Q psy8637           7 KSYTRPT-ADYKNLSQCFRLASKDYSKQFAHIYAVRLNKMRECLLARVSQKWGKSVSVLKLSDLNETDTEECVIIGTLFK   85 (216)
Q Consensus         7 ~~~~R~~-~~y~~~s~rF~l~~~~y~~QY~~iY~~RL~~Lr~~l~~~a~~kw~~~~~i~kll~l~~~~g~~cvvIGTlyK   85 (216)
                      ..++|.+ ++|+++++||.+++|+|++||++||++||++||+++.++|++||++.++++||+|+  ++|++|||||||||
T Consensus        29 ~~~~R~~~~~y~~~~~~F~l~~~~y~~QY~~iY~~RL~~Lr~~l~~~a~~kw~~~~~i~klldl--~~ge~c~viGTvyk  106 (476)
T 3e0j_A           29 ATFARVPVATYTNSSQPFRLGERSFSRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCEL--QPEEKCCVVGTLFK  106 (476)
T ss_dssp             CCEECCCTTCEEECCGGGCC------------CHHHHHHHHHHHHHHHHHHSCSCCCBCCSSSC--CTTCCEEEEEEEEE
T ss_pred             cccccccCccccccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHhhcc--cCCCEEEEEEEEEe
Confidence            3679999 99999999999999999999999999999999999999999999988999999999  68999999999999


Q ss_pred             eCCCCCchHHHHHhhhcCCCCCCCCCcCCCCCeEEEecCCCcEEEEeccCCCCceeeeEEEEEeccCCCCcEEEEEEEe-
Q psy8637          86 HQQLKPNILKEISEELKLVPQPQHTHFVSDSDELILEDELQRIPLHGNIDIHNQVTGVVVAIKGTPVGNGKFKVSDVCY-  164 (216)
Q Consensus        86 ~mklKPsIL~e~~~e~~~~~~~~~~~y~s~~D~l~LEDesgRI~L~G~i~~~~lVTGvVvaV~G~~~~~G~F~V~di~~-  164 (216)
                      +|+||||||+||++|+++.|++++.+|++++|+++||||||||+|.|.++++.+|||+||||+|++.++|+|+|+|+|| 
T Consensus       107 ~m~lKPsIL~eis~e~~~~~~~~~~~y~~~~D~l~LEDesGRv~L~g~~~~~~lVTG~VvaV~G~~~~~G~F~V~di~~P  186 (476)
T 3e0j_A          107 AMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKGTIDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFA  186 (476)
T ss_dssp             EC----------------------CCCCCSSCEEEEECSSCEEEEEESCCTTTCCTTCEEEEEEEECTTSSEEEEEEEEC
T ss_pred             cccCCCcHHHHHhhhhccCCCCccccccCCCceEEEECCCCEEEEEEEcccccccCCcEEEEEEEEcCCCeEEEEEEEcC
Confidence            9999999999999999999999999999999999999999999999998999999999999999999999999999999 


Q ss_pred             cCCCCCCcccCCCCCCcceeecCCCCHHHH--HHHhhHHHhhhhhcCC
Q psy8637         165 ATPVFKPRTTLSNNENKYVNHVDAFTDDDF--IRLWEGLFFSMWMSDK  210 (216)
Q Consensus       165 ~~~pq~p~~~~~~~~~~yv~lvsgl~~~d~--~~l~kgl~~~~w~~d~  210 (216)
                      ++|||+|++....+  +||||+|||++..-  ...-....+..|+++.
T Consensus       187 d~ppq~~~~~~~~~--~~ialVSGL~igs~~~~~~~~~~ll~d~L~G~  232 (476)
T 3e0j_A          187 DLAPQKPAPPLDTD--RFVLLVSGLGLGGGGGESLLGTQLLVDVVTGQ  232 (476)
T ss_dssp             BCCCCCCCCCCSSC--CEEEEECCCCBTSSCHHHHHHHHHHHHHHHTC
T ss_pred             CCCCCCCCCcCCCC--CEEEEECCcccCCCcccchHHHHHHHHHHcCC
Confidence            99999998765544  99999999997542  2233557888999864

>3flo_A DNA polymerase alpha subunit B; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}

Probab=94.83  E-value=0.33  Score=45.37  Aligned_cols=102  Identities=14%  Similarity=0.231  Sum_probs=68.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHh---hcCCCcceeeeeecccCCCCeEEEEEEEEeeCCCCCchHHHHHhhhcCCCCCCCC
Q psy8637          34 FAHIYAVRLNKMRECLLARVSQ---KWGKSVSVLKLSDLNETDTEECVIIGTLFKHQQLKPNILKEISEELKLVPQPQHT  110 (216)
Q Consensus        34 Y~~iY~~RL~~Lr~~l~~~a~~---kw~~~~~i~kll~l~~~~g~~cvvIGTlyK~mklKPsIL~e~~~e~~~~~~~~~~  110 (216)
                      -+.+-..|+..+...+.+.-.-   .||+ .      .+  ......+++|-|..+... +        |         .
T Consensus        12 ~~~vLd~~I~~~~~~~~~~~~~~~~~f~~-p------~~--~sq~~v~~vGRI~~Ds~~-~--------e---------g   64 (460)
T 3flo_A           12 ASDVLDDQIESFTKIIQNHYKLSPNDFAD-P------TI--QSQSEIYAVGRIVPDSPT-Y--------D---------K   64 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCGGGBCC-T------TS--CCSSCEEEEEEEEESSSS-C--------C---------S
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCccccCC-c------cc--CccccEEEEEEEeeCCCC-C--------C---------C
Confidence            3455566777776666554321   2443 0      12  467789999999998521 0        0         0


Q ss_pred             CcCCCCCeEEEec-----CCCcEEEEec-cCCCCceeeeEEEEEeccCCCCcEEEEEEEe
Q psy8637         111 HFVSDSDELILED-----ELQRIPLHGN-IDIHNQVTGVVVAIKGTPVGNGKFKVSDVCY  164 (216)
Q Consensus       111 ~y~s~~D~l~LED-----esgRI~L~G~-i~~~~lVTGvVvaV~G~~~~~G~F~V~di~~  164 (216)
                      +  -++..++||=     ...||+|.=+ +..-.+..|-|||++|+-...+.|.|++++-
T Consensus        65 k--Ln~~Sl~LE~sr~~g~G~rV~Ldls~l~~~slFPGQIVav~G~N~~G~~f~v~ei~~  122 (460)
T 3flo_A           65 F--LNPESLSLETSRMGGVGRRVRLDLSQVNELSFFLGQIVAFKGKNANGDYFTVNSILP  122 (460)
T ss_dssp             C--CCTTSEEEECCHHHHTTCEEEEECTTCCCEEECTTCEEEEEEECSSSSCEEEEEECC
T ss_pred             C--cchhheEEEeccccCCCeEEEeecccCCceeecCCCEEEEEEEcCCCCEEEEeeecc
Confidence            1  1245788983     3689999876 7778899999999999854556799999884

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00